BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018743
         (351 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
          Length = 485

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/351 (76%), Positives = 304/351 (86%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKCKQPEQASLLFEVMLS+GL+P++DVYTALVSAYG SG LD+AF T+ DMKSVSD
Sbjct: 135 LMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSD 194

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDVYTYSILIK CT   RFDLIE+I  EMSYLGIECS VTYNTIIDGYGKA  FE ME
Sbjct: 195 CKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELME 254

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           SS + M+ESG C PDIFTLNS I AYGNSG IEKMEKWY+EF LMG++ DI+T NIL +S
Sbjct: 255 SSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRS 314

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+A MY+KM SVM+FM+KRF+ PT+VT+NIVIE FG+ G+IEKMEE+F KMKH+G+KPN
Sbjct: 315 YGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPN 374

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           SITYCSLVSAYSKAG + KVDSILRQ+ENSDV LDTPFFNC++SAYGQAGDVE+MGELFL
Sbjct: 375 SITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFL 434

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
            MKER C PDNITFATMIQAYNA GM EAAQNLE  MI  K  SG +LI C
Sbjct: 435 VMKERKCKPDNITFATMIQAYNAQGMIEAAQNLEVNMITTKNKSGTRLIGC 485



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 67/184 (36%), Gaps = 38/184 (20%)

Query: 183 RAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           R   Y+    +   ++K+ ++ P   TY  ++   GK    E+    F+ M   G++P  
Sbjct: 104 RENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTL 163

Query: 242 ITYCSLVSAYSKAGLIMK------------------------------------VDSILR 265
             Y +LVSAY  +G + K                                    ++ I  
Sbjct: 164 DVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFT 223

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER-HCVPDNITFATMIQAYNAL 324
           ++    +   T  +N II  YG+A   E M      M E   C+PD  T  + I AY   
Sbjct: 224 EMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNS 283

Query: 325 GMTE 328
           G  E
Sbjct: 284 GQIE 287


>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Vitis vinifera]
          Length = 538

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/347 (76%), Positives = 301/347 (86%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKCKQPEQASLLFEVMLS+GL+P++DVYTALVSAYG SG LD+AF T+ DMKSVSD
Sbjct: 135 LMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSD 194

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDVYTYSILIK CT   RFDLIE+I  EMSYLGIECS VTYNTIIDGYGKA  FE ME
Sbjct: 195 CKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVTYNTIIDGYGKADMFELME 254

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           SS + M+ESG C PDIFTLNS I AYGNSG IEKMEKWY+EF LMG++ DI+T NIL +S
Sbjct: 255 SSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWYDEFQLMGIRPDIKTFNILIRS 314

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+A MY+KM SVM+FM+KRF+ PT+VT+NIVIE FG+ G+IEKMEE+F KMKH+G+KPN
Sbjct: 315 YGKACMYEKMVSVMEFMKKRFYSPTIVTFNIVIEMFGRVGNIEKMEEFFLKMKHQGVKPN 374

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           SITYCSLVSAYSKAG + KVDSILRQ+ENSDV LDTPFFNC++SAYGQAGDVE+MGELFL
Sbjct: 375 SITYCSLVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFL 434

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
            MKER C PDNITFATMIQAYNA GM EAAQNLE  MI  K  SG +
Sbjct: 435 VMKERKCKPDNITFATMIQAYNAQGMIEAAQNLEVNMITTKNKSGTR 481



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 2/158 (1%)

Query: 183 RAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           R   Y+    +   ++K+ ++ P   TY  ++   GK    E+    F+ M   G++P  
Sbjct: 104 RENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTL 163

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             Y +LVSAY  +G + K    +  +++ SD   D   ++ +I      G  + +  +F 
Sbjct: 164 DVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFT 223

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            M         +T+ T+I  Y    M E  ++   +MI
Sbjct: 224 EMSYLGIECSTVTYNTIIDGYGKADMFELMESSLTEMI 261


>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Glycine max]
          Length = 481

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 258/351 (73%), Positives = 305/351 (86%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QPE+ASLLFE+MLS+GLKP+VDVYTALVSAYGQSGLLD+AFST+ DMKSV D
Sbjct: 131 LMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALVSAYGQSGLLDQAFSTVEDMKSVVD 190

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYSILI+ C KF RFDLIE +LAEMSYLGI+C+ VTYN+IIDGYGKA  FE+M+
Sbjct: 191 CEPDVYTYSILIRCCAKFRRFDLIEHVLAEMSYLGIKCNCVTYNSIIDGYGKASMFEQMD 250

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            + + M+E+G  HPD+FTLNS + AYGN+G I+KMEKWY+EF LMG+K DI T N + KS
Sbjct: 251 DALNDMIENGNSHPDVFTLNSFVGAYGNAGQIDKMEKWYDEFQLMGIKPDITTFNTMIKS 310

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMY+KM++VMDFM+KRFF PT+VTYN VIE FGKAG IEKM+++F KMKH G+KPN
Sbjct: 311 YGKAGMYEKMKTVMDFMEKRFFTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVKPN 370

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           SITYCSLVSAYSK G I KVDSI+R VENSDV+LDTPFFNCIISAYGQAG+++KMGELFL
Sbjct: 371 SITYCSLVSAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISAYGQAGNLKKMGELFL 430

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
            M+ER C PDNITFA MIQ+YN  GMTEA QNLEN MI+ K + G KLI C
Sbjct: 431 AMRERKCEPDNITFACMIQSYNTQGMTEAVQNLENMMISAKSSLGTKLIGC 481



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 44/174 (25%)

Query: 193 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           +   ++K++++ P   TY  ++   GK    E+    F+ M   G+KP    Y +LVSAY
Sbjct: 110 IFALLRKQYWYQPRCRTYAKLLMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALVSAY 169

Query: 252 SKAGLIMKVDSILRQVENSDVILDTP---------------------------------- 277
            ++GL+   D     VE+   ++D                                    
Sbjct: 170 GQSGLL---DQAFSTVEDMKSVVDCEPDVYTYSILIRCCAKFRRFDLIEHVLAEMSYLGI 226

Query: 278 -----FFNCIISAYGQAGDVEKMGELFLTMKER-HCVPDNITFATMIQAYNALG 325
                 +N II  YG+A   E+M +    M E  +  PD  T  + + AY   G
Sbjct: 227 KCNCVTYNSIIDGYGKASMFEQMDDALNDMIENGNSHPDVFTLNSFVGAYGNAG 280


>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 486

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 257/345 (74%), Positives = 303/345 (87%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QPE+A LLFEVM ++GL+P++DVYTALVSAYG+SGLL +AFST+++MKSVSD
Sbjct: 135 LMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFSTVDEMKSVSD 194

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDVYTYS+LI  CTK HRFDLI +IL+EMSYLG+ECS VT+NTII+GYGKAK F EME
Sbjct: 195 CKPDVYTYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYGKAKMFREME 254

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +S + M+E G   PD+FT NS+I AYGNSG IEKMEKWYNEF LMG+  DI+T NIL KS
Sbjct: 255 NSLTNMIEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLMGISPDIKTFNILIKS 314

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMY+K+ SV++FM+KRFF PTVVTYNI+IETFG+AG IE M+EYFK MKH GMKPN
Sbjct: 315 YGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHLGMKPN 374

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +ITYCSLVSAYSKAGL+MKV+SILRQVENSDV+LDT FFNCII+AYGQAGDV+KM ELFL
Sbjct: 375 AITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQAGDVDKMAELFL 434

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            M+ER C+PDN+TFATMIQAY   GMTEAAQ LE  M+A K NSG
Sbjct: 435 EMRERECMPDNVTFATMIQAYRGQGMTEAAQALEKMMLAAKGNSG 479



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 42/219 (19%)

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGK 218
           +++N +  KA ++ L+   K       +     + + ++K+ ++ P   TY  ++   GK
Sbjct: 85  SKYNRLWPKAVLEALDDAIKER----RWKSALKIFELLRKQHWYEPRCQTYTKLLMMLGK 140

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK------------------- 259
               E+    F+ M+  G++P    Y +LVSAY ++GL+ K                   
Sbjct: 141 CRQPEEARLLFEVMQTEGLRPTIDVYTALVSAYGESGLLAKAFSTVDEMKSVSDCKPDVY 200

Query: 260 -----------------VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
                            +  IL ++    V   T  FN II+ YG+A    +M      M
Sbjct: 201 TYSVLINICTKLHRFDLIGRILSEMSYLGVECSTVTFNTIINGYGKAKMFREMENSLTNM 260

Query: 303 KE-RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            E  + VPD  TF ++I AY   G  E  +   N+   M
Sbjct: 261 IEIGNSVPDLFTFNSVIGAYGNSGRIEKMEKWYNEFQLM 299


>gi|224104097|ref|XP_002313317.1| predicted protein [Populus trichocarpa]
 gi|222849725|gb|EEE87272.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 256/347 (73%), Positives = 301/347 (86%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QPE+ S LFEVMLSDGLKP++DVYTALVSAYG+SG LD+AFS + +MK++S+
Sbjct: 122 LMMLGKCRQPEEGSFLFEVMLSDGLKPTIDVYTALVSAYGKSGQLDKAFSIVVEMKAISE 181

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDVYTYSILI  C K HRF+LI  ILAEMSYLGIECS VTYNTIIDGYGKAK FEEME
Sbjct: 182 CKPDVYTYSILINCCIKLHRFELIRGILAEMSYLGIECSTVTYNTIIDGYGKAKMFEEME 241

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           ++ + M+ESG   PD+FT NS+I AYG+ G I+KMEKWY EF LMG++ DI+T NIL +S
Sbjct: 242 NTLTDMIESGSSVPDLFTFNSIIGAYGSKGRIDKMEKWYTEFQLMGLRQDIKTFNILIRS 301

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMY KMRSV++FM+KRFF P++VT+NI IETFGKAG IE MEEYF KMKH G+KPN
Sbjct: 302 YGKAGMYGKMRSVLEFMEKRFFSPSIVTHNIFIETFGKAGDIETMEEYFSKMKHLGIKPN 361

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           ++TYCSLVSAYSKAG IMKVDSILRQVENSDVILDTPFFNC+ISAYG+AGD+EKM ELFL
Sbjct: 362 TVTYCSLVSAYSKAGHIMKVDSILRQVENSDVILDTPFFNCVISAYGRAGDIEKMSELFL 421

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
            M+ R C PD+ITFATMIQAYNA GM EAAQ +EN MIA ++NSG +
Sbjct: 422 GMEGRKCKPDSITFATMIQAYNAQGMIEAAQGMENMMIATRKNSGMR 468



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 42/203 (20%)

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKA 219
           ++N +  KA ++ L+   K       ++    + + ++K+ ++ P   TY  ++   GK 
Sbjct: 73  KYNNLWPKAVLEALDDAIKE----NQWESALKIFELLRKQHWYEPRTKTYTKLLMMLGKC 128

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE-----NSDVIL 274
              E+    F+ M   G+KP    Y +LVSAY K+G + K  SI+ +++       DV  
Sbjct: 129 RQPEEGSFLFEVMLSDGLKPTIDVYTALVSAYGKSGQLDKAFSIVVEMKAISECKPDVYT 188

Query: 275 DTPFFNC-------------------------------IISAYGQAGDVEKMGELFLTMK 303
            +   NC                               II  YG+A   E+M      M 
Sbjct: 189 YSILINCCIKLHRFELIRGILAEMSYLGIECSTVTYNTIIDGYGKAKMFEEMENTLTDMI 248

Query: 304 ER-HCVPDNITFATMIQAYNALG 325
           E    VPD  TF ++I AY + G
Sbjct: 249 ESGSSVPDLFTFNSIIGAYGSKG 271


>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 511

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 245/345 (71%), Positives = 293/345 (84%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ML KCKQP++AS L+E ML +GLKP+VDV TALVSAYGQSGL   AFSTI DMKSV D
Sbjct: 139 LMMLSKCKQPKEASQLYETMLFEGLKPTVDVLTALVSAYGQSGLFRHAFSTIEDMKSVVD 198

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDVYTYS+LI  C KF RFDLIE++LA+MSY GIEC++VTYN+IIDGYGKA  FE+ME
Sbjct: 199 CKPDVYTYSVLISCCAKFRRFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQME 258

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +S + M+E+  C PD+FTLNS+I +YGN G I+KMEKWY+EF LM +K DI+T N++ KS
Sbjct: 259 NSLTDMIENENCQPDVFTLNSLIGSYGNGGKIDKMEKWYDEFQLMSIKPDIKTFNMMIKS 318

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMYDKM+SVMDFM++RFF PT+VTYN VIE +GKAG IEKM+++FK MKH GMKPN
Sbjct: 319 YGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPN 378

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           S+TYCSLV+AYSKAGLI K+DSILR VENSDVILDTPFFNCIISAYGQ GD++KMGELFL
Sbjct: 379 SVTYCSLVNAYSKAGLIRKIDSILRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELFL 438

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            M+ R C PD  TF  MIQAYN  G+TEAA+NLE  MI+ K++SG
Sbjct: 439 AMRARKCEPDRTTFTCMIQAYNTQGITEAAKNLETMMISAKDSSG 483


>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
 gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
          Length = 477

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 236/342 (69%), Positives = 287/342 (83%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++LGKCKQPEQASLLFE+M S+GLKPS+DVYTALVSAYGQSGLL +A ST+++MKS+SD
Sbjct: 134 LMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHKAISTVDEMKSISD 193

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDV+TYSILI  CT+  RFDL++KILA+MS LGI C+ VTYNTII+G+GKAK FE+ME
Sbjct: 194 CKPDVHTYSILIDCCTRLRRFDLLKKILADMSCLGITCNTVTYNTIINGFGKAKMFEQME 253

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S    M+ES  C PD+ T N+ I AYGNS  IEKMEKWY EF LMG++ DI T N +  S
Sbjct: 254 SLLLEMIESDSCPPDLITFNTFIRAYGNSEQIEKMEKWYKEFQLMGIEPDIWTYNSMISS 313

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMYDKM+SV++FM+KRFF PT+VT N +I++FG+AG+IE+MEEYFK MK +GMKPN
Sbjct: 314 YGKAGMYDKMKSVLNFMEKRFFSPTIVTMNTIIDSFGRAGNIEEMEEYFKNMKFQGMKPN 373

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           S+TYCSLV+AY K+G + KVDSILRQ+ENSDV+ DTP FNC+I+ YGQAG+V KMGELFL
Sbjct: 374 SVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNCLINVYGQAGNVRKMGELFL 433

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
            MKE  CVPD ITFATMI+A  A GMTE AQ LENK+IA  +
Sbjct: 434 EMKENKCVPDGITFATMIRALKAQGMTEDAQRLENKLIATND 475


>gi|75265624|sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170
 gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia ligase-like protein [Arabidopsis
           thaliana]
          Length = 447

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/341 (67%), Positives = 281/341 (82%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG CKQP+QASLLFEVMLS+GLKP++DVYT+L+S YG+S LLD+AFST+  MKSVSDCK
Sbjct: 103 VLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCK 162

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+T+++LI  C K  RFDL++ I+ EMSYLG+ CS VTYNTIIDGYGKA  FEEMES 
Sbjct: 163 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV 222

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M+E G   PD+ TLNS+I +YGN  N+ KME WY+ F LMGV+ DI T NIL  S+G
Sbjct: 223 LADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFG 282

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AGMY KM SVMDFM+KRFF  T VTYNIVIETFGKAG IEKM++ F+KMK++G+KPNSI
Sbjct: 283 KAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSI 342

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TYCSLV+AYSKAGL++K+DS+LRQ+ NSDV+LDTPFFNCII+AYGQAGD+  M EL++ M
Sbjct: 343 TYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM 402

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           +ER C PD ITFATMI+ Y A G+ +A Q LE +MI+  EN
Sbjct: 403 EERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSGEN 443



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 115/292 (39%), Gaps = 72/292 (24%)

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +D   K  +++     F+ + +     P   T   +    GN    ++    +      G
Sbjct: 65  LDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEG 124

Query: 167 VKADIQTLNILTKSYGRAGMYDK-------MRSVMDFMQKRFFFP--------------- 204
           +K  I     L   YG++ + DK       M+SV D     F F                
Sbjct: 125 LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLV 184

Query: 205 --------------TVVTYNIVIETFGKAGHIE--------------------------- 223
                         + VTYN +I+ +GKAG  E                           
Sbjct: 185 KSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIG 244

Query: 224 ---------KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
                    KME ++ + +  G++P+  T+  L+ ++ KAG+  K+ S++  +E     L
Sbjct: 245 SYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSL 304

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
            T  +N +I  +G+AG +EKM ++F  MK +   P++IT+ +++ AY+  G+
Sbjct: 305 TTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGL 356



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 2/148 (1%)

Query: 193 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           + + ++K+ ++ P   TY  + +  G     ++    F+ M   G+KP    Y SL+S Y
Sbjct: 80  IFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVY 139

Query: 252 SKAGLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            K+ L+ K  S L  +++ SD   D   F  +IS   + G  + +  + L M        
Sbjct: 140 GKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCS 199

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
            +T+ T+I  Y   GM E  +++   MI
Sbjct: 200 TVTYNTIIDGYGKAGMFEEMESVLADMI 227


>gi|334185941|ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|332645523|gb|AEE79044.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 499

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 230/345 (66%), Positives = 283/345 (82%), Gaps = 2/345 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG CKQP+QASLLFEVMLS+GLKP++DVYT+L+S YG+S LLD+AFST+  MKSVSDCK
Sbjct: 153 VLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCK 212

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+T+++LI  C K  RFDL++ I+ EMSYLG+ CS VTYNTIIDGYGKA  FEEMES 
Sbjct: 213 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV 272

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M+E G   PD+ TLNS+I +YGN  N+ KME WY+ F LMGV+ DI T NIL  S+G
Sbjct: 273 LADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFG 332

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AGMY KM SVMDFM+KRFF  T VTYNIVIETFGKAG IEKM++ F+KMK++G+KPNSI
Sbjct: 333 KAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSI 392

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TYCSLV+AYSKAGL++K+DS+LRQ+ NSDV+LDTPFFNCII+AYGQAGD+  M EL++ M
Sbjct: 393 TYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM 452

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
           +ER C PD ITFATMI+ Y A G+ +A Q LE +MI+   + GKK
Sbjct: 453 EERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMIS--SDIGKK 495



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 115/292 (39%), Gaps = 72/292 (24%)

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +D   K  +++     F+ + +     P   T   +    GN    ++    +      G
Sbjct: 115 LDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEG 174

Query: 167 VKADIQTLNILTKSYGRAGMYDK-------MRSVMDFMQKRFFFP--------------- 204
           +K  I     L   YG++ + DK       M+SV D     F F                
Sbjct: 175 LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLV 234

Query: 205 --------------TVVTYNIVIETFGKAGHIE--------------------------- 223
                         + VTYN +I+ +GKAG  E                           
Sbjct: 235 KSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIG 294

Query: 224 ---------KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
                    KME ++ + +  G++P+  T+  L+ ++ KAG+  K+ S++  +E     L
Sbjct: 295 SYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSL 354

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
            T  +N +I  +G+AG +EKM ++F  MK +   P++IT+ +++ AY+  G+
Sbjct: 355 TTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGL 406



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 2/148 (1%)

Query: 193 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           + + ++K+ ++ P   TY  + +  G     ++    F+ M   G+KP    Y SL+S Y
Sbjct: 130 IFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVY 189

Query: 252 SKAGLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            K+ L+ K  S L  +++ SD   D   F  +IS   + G  + +  + L M        
Sbjct: 190 GKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCS 249

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
            +T+ T+I  Y   GM E  +++   MI
Sbjct: 250 TVTYNTIIDGYGKAGMFEEMESVLADMI 277


>gi|242037185|ref|XP_002465987.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
 gi|241919841|gb|EER92985.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
          Length = 480

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/334 (62%), Positives = 263/334 (78%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QP  A+ LF+ MLS+ L+P+ DVYTALV AYG SGLLDEA + +  MK  +D
Sbjct: 133 LMMLGKCRQPGPAAALFKAMLSERLRPTADVYTALVGAYGYSGLLDEALAAVEQMKGAAD 192

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPD YT+S+LI  C K  RFDLI  +L EMSYLGIEC++V +N IIDGYGKA  FEEME
Sbjct: 193 CKPDGYTFSVLINCCAKSRRFDLIPAVLDEMSYLGIECNSVIHNAIIDGYGKAAMFEEME 252

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            + SAM+ESG   PDI+T+NS+I AYGN G  ++MEK Y+EF LMGV+ D +T NI+ KS
Sbjct: 253 GALSAMLESGSNVPDIYTMNSVIGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNIMIKS 312

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMYDKM S+  +M+KRFF PT VT+N VIE FG+AG+IEKME YF+ MK +G+KPN
Sbjct: 313 YGKAGMYDKMMSIFRYMKKRFFSPTAVTFNTVIECFGRAGNIEKMEYYFRLMKIQGVKPN 372

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ITYCSLV+ YSKAGL+ KV  I+RQ EN++V+LDTPFFNC+ISAY ++GD++ M E+  
Sbjct: 373 PITYCSLVNGYSKAGLLDKVPGIIRQTENTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQ 432

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
            MKE+ C PD IT+ATMIQAY A GM EAA+ LE
Sbjct: 433 LMKEKKCKPDKITYATMIQAYTAQGMDEAARLLE 466


>gi|297820044|ref|XP_002877905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323743|gb|EFH54164.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 439

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/341 (63%), Positives = 271/341 (79%), Gaps = 11/341 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG CKQP+QASLLFEVMLS+GLKP++DVYT+L++ YG+S LLD+AFST+  MKSVSDCK
Sbjct: 103 VLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLIAVYGKSELLDKAFSTLEYMKSVSDCK 162

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+T+++LI+ C K  RFDL+++I+ EMSYLG+ CS VTYNTIIDGYGKA  FEEME+ 
Sbjct: 163 PDVFTFTVLIRCCCKLGRFDLVKRIILEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMENV 222

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M+E G   PD+FTLNS+I   G+S  +   E         G   DI T NIL  S+G
Sbjct: 223 LADMIEDGDSLPDVFTLNSII---GSSEMVAHEED--------GELPDITTFNILILSFG 271

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AGMY KM SVMDFM+KRFF  T VTYNIVIETFGKAG IEKM++ F+KMK++G+KPNSI
Sbjct: 272 KAGMYKKMSSVMDFMEKRFFSLTTVTYNIVIETFGKAGKIEKMDDVFRKMKYQGVKPNSI 331

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +YCSLV+AYSKAGL+ K+DSILRQ+ NSDV+LDTPFFNCII+AYGQAGD+  M EL++ M
Sbjct: 332 SYCSLVNAYSKAGLVGKIDSILRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM 391

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           +ER C PD ITFATMI+ Y A G+ +A Q LE +MI+  EN
Sbjct: 392 EERKCKPDKITFATMIKTYKAHGIFDAVQELEKQMISTGEN 432



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 111/281 (39%), Gaps = 61/281 (21%)

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +D   K  +++     F  + +     P   T   +    GN    ++    +      G
Sbjct: 65  LDEAIKENRWQSALKIFHLLRKQHWYEPKCKTYTKLFKVLGNCKQPDQASLLFEVMLSEG 124

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ---------------------------- 198
           +K  I     L   YG++ + DK  S +++M+                            
Sbjct: 125 LKPTIDVYTSLIAVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLIRCCCKLGRFDLV 184

Query: 199 KRFFFP--------TVVTYNIVIETFGKAGHIEKMEEYFKKM------------------ 232
           KR            + VTYN +I+ +GKAG  E+ME     M                  
Sbjct: 185 KRIILEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMENVLADMIEDGDSLPDVFTLNSIIG 244

Query: 233 -------KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
                  +  G  P+  T+  L+ ++ KAG+  K+ S++  +E     L T  +N +I  
Sbjct: 245 SSEMVAHEEDGELPDITTFNILILSFGKAGMYKKMSSVMDFMEKRFFSLTTVTYNIVIET 304

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +G+AG +EKM ++F  MK +   P++I++ +++ AY+  G+
Sbjct: 305 FGKAGKIEKMDDVFRKMKYQGVKPNSISYCSLVNAYSKAGL 345



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 1/142 (0%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++ ++ P   TY  + +  G     ++    F+ M   G+KP    Y SL++ Y K+ L+
Sbjct: 86  KQHWYEPKCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLIAVYGKSELL 145

Query: 258 MKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
            K  S L  +++ SD   D   F  +I    + G  + +  + L M         +T+ T
Sbjct: 146 DKAFSTLEYMKSVSDCKPDVFTFTVLIRCCCKLGRFDLVKRIILEMSYLGVGCSTVTYNT 205

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           +I  Y   GM E  +N+   MI
Sbjct: 206 IIDGYGKAGMFEEMENVLADMI 227


>gi|125542133|gb|EAY88272.1| hypothetical protein OsI_09727 [Oryza sativa Indica Group]
          Length = 450

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/335 (62%), Positives = 265/335 (79%), Gaps = 1/335 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QP  A+ LF+VMLS+ LKP+VDVYTALV AYG SGLLDEA +T+  MK V+D
Sbjct: 96  LMMLGKCRQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLLDEALATVEQMKGVAD 155

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPD YT+S+LI  C+K  RFD I  IL EMSYLG++C+AV +N IIDGYGKA   EEME
Sbjct: 156 CKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNAVIHNAIIDGYGKAGMLEEME 215

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGN-IEKMEKWYNEFNLMGVKADIQTLNILTK 179
           ++ ++M+E G   PDI+T+NS+I AYGN GN I +ME+WY+EF LMGV+ D QT NI+ K
Sbjct: 216 NALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFNIMIK 275

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           SYG A M+DKM SV+ +M+K FF PTVVT+NI+IE+FG+AG+IEKME YF+ MK +G+KP
Sbjct: 276 SYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKP 335

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N ITYCSLV+ YSKAG + KV  I+RQ EN+DV+LDTPFFNC+I AY ++GD++ M E+ 
Sbjct: 336 NPITYCSLVNGYSKAGFLDKVPGIIRQTENTDVVLDTPFFNCVIDAYAKSGDIKIMEEML 395

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
             MKE+ C PD +T+ TMIQAYN  GM EAA  L+
Sbjct: 396 QLMKEKKCKPDKVTYTTMIQAYNVHGMDEAANLLK 430



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 63/165 (38%), Gaps = 37/165 (22%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +++++ P   TY  ++   GK          FK M    +KP    Y +LV AY  +GL+
Sbjct: 81  KQQWYKPRSQTYARLLMMLGKCRQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLL 140

Query: 258 ---------------MKVD-----------SILRQVENSDVILD----------TPFFNC 281
                           K D           S LR+ +    ILD              N 
Sbjct: 141 DEALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNAVIHNA 200

Query: 282 IISAYGQAGDVEKMGELFLTMKER-HCVPDNITFATMIQAYNALG 325
           II  YG+AG +E+M     +M E    VPD  T  ++I AY   G
Sbjct: 201 IIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHG 245


>gi|27476102|gb|AAO17033.1| Hypothetical protein [Oryza sativa Japonica Group]
 gi|108705848|gb|ABF93643.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584686|gb|EAZ25350.1| hypothetical protein OsJ_09164 [Oryza sativa Japonica Group]
          Length = 450

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/335 (61%), Positives = 265/335 (79%), Gaps = 1/335 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QP  A+ LF+VMLS+ LKP+VDVYTALV AYG SGLLD+A +T+  MK V+D
Sbjct: 96  LMMLGKCQQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLLDQALATVEQMKGVAD 155

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPD YT+S+LI  C+K  RFD I  IL EMSYLG++C+AV +N IIDGYGKA   EEME
Sbjct: 156 CKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNAVIHNAIIDGYGKAGMLEEME 215

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGN-IEKMEKWYNEFNLMGVKADIQTLNILTK 179
           ++ ++M+E G   PDI+T+NS+I AYGN GN I +ME+WY+EF LMGV+ D QT NI+ K
Sbjct: 216 NALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFNIMIK 275

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           SYG A M+DKM SV+ +M+K FF PTVVT+NI+IE+FG+AG+IEKME YF+ MK +G+KP
Sbjct: 276 SYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKP 335

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N ITYCSLV+ YSKAG + KV  I+RQ EN+DV+LDTPFFNC+I AY ++GD++ M E+ 
Sbjct: 336 NPITYCSLVNGYSKAGFLDKVPGIIRQTENTDVVLDTPFFNCVIDAYAKSGDIKIMEEML 395

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
             MKE+ C PD +T+ TMIQAYN  GM EAA  L+
Sbjct: 396 QLMKEKKCKPDKVTYTTMIQAYNVHGMDEAANLLK 430



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 63/165 (38%), Gaps = 37/165 (22%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +++++ P   TY  ++   GK          FK M    +KP    Y +LV AY  +GL+
Sbjct: 81  KQQWYKPRSQTYARLLMMLGKCQQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLL 140

Query: 258 ---------------MKVD-----------SILRQVENSDVILD----------TPFFNC 281
                           K D           S LR+ +    ILD              N 
Sbjct: 141 DQALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNAVIHNA 200

Query: 282 IISAYGQAGDVEKMGELFLTMKER-HCVPDNITFATMIQAYNALG 325
           II  YG+AG +E+M     +M E    VPD  T  ++I AY   G
Sbjct: 201 IIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHG 245


>gi|115450301|ref|NP_001048751.1| Os03g0115300 [Oryza sativa Japonica Group]
 gi|113547222|dbj|BAF10665.1| Os03g0115300 [Oryza sativa Japonica Group]
          Length = 442

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 207/335 (61%), Positives = 265/335 (79%), Gaps = 1/335 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QP  A+ LF+VMLS+ LKP+VDVYTALV AYG SGLLD+A +T+  MK V+D
Sbjct: 96  LMMLGKCQQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLLDQALATVEQMKGVAD 155

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPD YT+S+LI  C+K  RFD I  IL EMSYLG++C+AV +N IIDGYGKA   EEME
Sbjct: 156 CKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNAVIHNAIIDGYGKAGMLEEME 215

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGN-IEKMEKWYNEFNLMGVKADIQTLNILTK 179
           ++ ++M+E G   PDI+T+NS+I AYGN GN I +ME+WY+EF LMGV+ D QT NI+ K
Sbjct: 216 NALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFNIMIK 275

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           SYG A M+DKM SV+ +M+K FF PTVVT+NI+IE+FG+AG+IEKME YF+ MK +G+KP
Sbjct: 276 SYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKP 335

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N ITYCSLV+ YSKAG + KV  I+RQ EN+DV+LDTPFFNC+I AY ++GD++ M E+ 
Sbjct: 336 NPITYCSLVNGYSKAGFLDKVPGIIRQTENTDVVLDTPFFNCVIDAYAKSGDIKIMEEML 395

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
             MKE+ C PD +T+ TMIQAYN  GM EAA  L+
Sbjct: 396 QLMKEKKCKPDKVTYTTMIQAYNVHGMDEAANLLK 430



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 63/165 (38%), Gaps = 37/165 (22%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +++++ P   TY  ++   GK          FK M    +KP    Y +LV AY  +GL+
Sbjct: 81  KQQWYKPRSQTYARLLMMLGKCQQPGAATALFKVMLSERLKPTVDVYTALVGAYGYSGLL 140

Query: 258 ---------------MKVD-----------SILRQVENSDVILD----------TPFFNC 281
                           K D           S LR+ +    ILD              N 
Sbjct: 141 DQALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNAVIHNA 200

Query: 282 IISAYGQAGDVEKMGELFLTMKER-HCVPDNITFATMIQAYNALG 325
           II  YG+AG +E+M     +M E    VPD  T  ++I AY   G
Sbjct: 201 IIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHG 245


>gi|414864365|tpg|DAA42922.1| TPA: hypothetical protein ZEAMMB73_846849 [Zea mays]
          Length = 485

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 201/334 (60%), Positives = 257/334 (76%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QP  A+ LF  MLS+ L+P+ DVYTAL+ AYG SGLL+ A + +  MK  +D
Sbjct: 132 LMMLGKCRQPGPAAGLFREMLSERLRPTADVYTALIGAYGYSGLLEHALAAVEQMKGAAD 191

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPD YT+S+L+  C K  RFDLI  +L EMSYLGIEC++V +N IIDGYGKA  FEEME
Sbjct: 192 CKPDGYTFSVLVDCCAKSRRFDLIPAVLDEMSYLGIECNSVIHNAIIDGYGKAAMFEEME 251

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            + S M+ESG   PDI+T+NS++ AYGN G  ++MEK Y+EF LMGV+ D +T NI+ +S
Sbjct: 252 GALSTMLESGSNVPDIYTMNSVVGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNIMIRS 311

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AGMY KM S+  +M+KRFF PT VT+N VIE FG+AG IEKME YF+ MK +G+KPN
Sbjct: 312 YGKAGMYVKMMSIFRYMKKRFFSPTAVTFNTVIECFGRAGDIEKMEYYFRLMKIQGVKPN 371

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ITYCSLV+ YSKAGL+ KV  ++RQ EN++V+LDTPFFNC+ISAY ++GD++ M E+  
Sbjct: 372 PITYCSLVNGYSKAGLLDKVAGVIRQTENTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQ 431

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
            MKE+ C PD IT+ATMIQAY A GM EAA  LE
Sbjct: 432 LMKEKRCKPDRITYATMIQAYTAHGMDEAAMLLE 465


>gi|357120957|ref|XP_003562190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Brachypodium distachyon]
          Length = 454

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/335 (58%), Positives = 254/335 (75%), Gaps = 1/335 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++MLGKC+QP  A+ LF VMLS+  L P+VDVYTALV AYG SG+LDEA +T+  MK  +
Sbjct: 100 LMMLGKCRQPGPAAALFRVMLSEERLAPTVDVYTALVGAYGYSGMLDEALATVELMKGAA 159

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           DCKPD YT+SILI  C K  RFDLI  +L EMSYLGI C+ V +N IIDGYGKA    EM
Sbjct: 160 DCKPDEYTFSILINCCCKSRRFDLIPPVLDEMSYLGIGCNVVIHNAIIDGYGKAGMLAEM 219

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            ++   M+E G   PDI+T+NS+I AYGN G ++ MEKWY+EF LMGV+ D +T NI+ K
Sbjct: 220 GTALCNMLEDGDNVPDIYTMNSIIWAYGNRGRVDDMEKWYSEFQLMGVEPDSRTFNIMIK 279

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           SYG+A M++KM  V+ +M++RFF PT  T+NI+IE FG+AG IEKME YF+ MK +G+KP
Sbjct: 280 SYGKANMHEKMMMVLKYMKRRFFSPTAATFNIIIECFGRAGDIEKMEYYFRLMKIQGIKP 339

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N ITYCSLV+ YSKAG++ KV +I+RQ EN+DV+LDTPFFNC+I+AY ++GD++ M E+ 
Sbjct: 340 NPITYCSLVNGYSKAGILDKVPAIIRQTENTDVVLDTPFFNCVINAYAKSGDIKIMEEML 399

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
             MKE+ C P  + + TMIQAY A GM EAA+ LE
Sbjct: 400 QLMKEKKCKPGKVIYTTMIQAYIAHGMDEAAKLLE 434


>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
 gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
          Length = 388

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 167/335 (49%), Positives = 238/335 (71%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +VMLGKCKQP++A  LF+ M+ +G   + + YTAL+SAYG+SGL D+AFS + +MK+  D
Sbjct: 37  IVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKAFSIMEEMKNTPD 96

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYSILIKSC +   FD ++ +L++M  LGI  + VTYNT+ID YGKAK F EME
Sbjct: 97  CRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVTYNTVIDAYGKAKMFAEME 156

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           ++   M+    C PD++T+NS I A+G SG +E ME  Y +F   G++ +I+T NIL  S
Sbjct: 157 ATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDS 216

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AG Y KM +VM++MQ+  +  T+VTYN+VI+ FG+AG +++ME  F+ M+   +KP+
Sbjct: 217 YGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPS 276

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSLV AY +AG   K+ S+LR +ENSDV LDT FFNC++ AYG+     +M E+  
Sbjct: 277 CVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLE 336

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
            M+E+ C PD +T+ TMI+AY+  GMT  A+ L N
Sbjct: 337 LMEEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRN 371



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 134/268 (50%), Gaps = 1/268 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +P    Y  LI    K  + D   ++   M   G   +  +Y  ++  YG++  F++  S
Sbjct: 27  RPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKAFS 86

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               M  +  C PD+ T + +I +       +K++   ++   +G++ +  T N +  +Y
Sbjct: 87  IMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVTYNTVIDAY 146

Query: 182 GRAGMYDKMR-SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           G+A M+ +M  ++M+ + ++   P V T N  I  FG +G +E ME  ++K +  G++PN
Sbjct: 147 GKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPN 206

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             T+  L+ +Y KAG   K+ +++  ++          +N +I A+G+AGD+++M  LF 
Sbjct: 207 IKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFR 266

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTE 328
            M+     P  +T  ++++AY   G  E
Sbjct: 267 LMRSERIKPSCVTLCSLVRAYREAGKPE 294



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 93/253 (36%), Gaps = 73/253 (28%)

Query: 18  EVMLSD----GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT------ 67
           +V+LSD    G++P+   Y  ++ AYG++ +  E  +T+ +M S  DC+PDV+T      
Sbjct: 121 QVLLSDMESLGIRPNTVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIR 180

Query: 68  -----------------------------YSILIKSCTKFHRFDLIEKILAEMSYLGIEC 98
                                        ++IL+ S  K   +  +  ++  M       
Sbjct: 181 AFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSW 240

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAM-------------------------------- 126
           + VTYN +ID +G+A   ++ME  F  M                                
Sbjct: 241 TIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKPEKIGSVL 300

Query: 127 --VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +E+     D    N ++ AYG      +M++        G K D  T   + K+Y   
Sbjct: 301 RFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYSIK 360

Query: 185 GMYDKMRSVMDFM 197
           GM    + + + +
Sbjct: 361 GMTSHAKKLRNLL 373



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 191 RSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           R V + ++++ ++ P    Y  +I   GK    +K  + F+ M   G      +Y +L+S
Sbjct: 14  RLVFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLS 73

Query: 250 AYSKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           AY ++GL  K  SI+ +++N+ D   D   ++ +I +  Q    +K+  L   M+     
Sbjct: 74  AYGRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIR 133

Query: 309 PDNITFATMIQAYNALGM 326
           P+ +T+ T+I AY    M
Sbjct: 134 PNTVTYNTVIDAYGKAKM 151


>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Vitis vinifera]
 gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  356 bits (914), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 168/337 (49%), Positives = 238/337 (70%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +VMLGKCKQPE+A  LF  M+ +G   + + YTAL+SAY +SGL D+AFS +  MK+  D
Sbjct: 145 IVMLGKCKQPEKAHALFLAMIDEGCVVNHEAYTALLSAYSRSGLFDKAFSLLEKMKNTPD 204

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYS+LIKSC +   FD +  +L++M+  GI+ + VTYNT+ID YGKAK+F EME
Sbjct: 205 CQPDVHTYSVLIKSCLQVVAFDKVPVLLSDMANQGIKPNTVTYNTLIDAYGKAKRFAEME 264

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+   M+  G C PD++T+NS + A+G+SG IE MEK Y +F   G++ +I+T NIL  S
Sbjct: 265 STLLEMLREGKCEPDVWTMNSTLRAFGSSGQIETMEKCYEKFQSAGIEPNIKTFNILLDS 324

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+A  Y+KM +VM++MQK  F  T+VTYN+VI+ FG+AG +++ME  F+ M+   +KP+
Sbjct: 325 YGKAEKYEKMSAVMEYMQKYHFSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPS 384

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSLV AY +AG   K+  +LR +ENSDV+LD  FFNC++ AYG+ G   +M  +  
Sbjct: 385 CVTLCSLVRAYGRAGKAEKIGGVLRFIENSDVMLDIVFFNCLVDAYGRLGCFAEMKGVLE 444

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            MK++ C PD IT+ TMI+AY   GMT  A+ L+  M
Sbjct: 445 MMKKKGCKPDKITYRTMIKAYKIGGMTSCAKELQGLM 481



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 98/269 (36%), Gaps = 72/269 (26%)

Query: 2   VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V++  C Q    ++  +L   M + G+KP+   Y  L+ AYG++    E  ST+ +M   
Sbjct: 214 VLIKSCLQVVAFDKVPVLLSDMANQGIKPNTVTYNTLIDAYGKAKRFAEMESTLLEMLRE 273

Query: 59  SDCKPDVYT-----------------------------------YSILIKSCTKFHRFDL 83
             C+PDV+T                                   ++IL+ S  K  +++ 
Sbjct: 274 GKCEPDVWTMNSTLRAFGSSGQIETMEKCYEKFQSAGIEPNIKTFNILLDSYGKAEKYEK 333

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM----------------- 126
           +  ++  M       + VTYN +ID +G+A   ++ME  F  M                 
Sbjct: 334 MSAVMEYMQKYHFSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 393

Query: 127 -----------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
                            +E+     DI   N ++ AYG  G   +M+         G K 
Sbjct: 394 AYGRAGKAEKIGGVLRFIENSDVMLDIVFFNCLVDAYGRLGCFAEMKGVLEMMKKKGCKP 453

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
           D  T   + K+Y   GM    + +   M+
Sbjct: 454 DKITYRTMIKAYKIGGMTSCAKELQGLMR 482



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 187 YDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           ++    V + ++++ ++ P    Y  +I   GK    EK    F  M   G   N   Y 
Sbjct: 118 WESALKVFELLREQLWYRPNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEGCVVNHEAYT 177

Query: 246 SLVSAYSKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           +L+SAYS++GL  K  S+L +++N+ D   D   ++ +I +  Q    +K+  L   M  
Sbjct: 178 ALLSAYSRSGLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKVPVLLSDMAN 237

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           +   P+ +T+ T+I AY   G  +    +E+ ++ M
Sbjct: 238 QGIKPNTVTYNTLIDAY---GKAKRFAEMESTLLEM 270


>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 636

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 165/335 (49%), Positives = 237/335 (70%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +VMLGKCKQPE+A  LF+ M+ +G   S + YTAL+SAYG+SGLLD+AFS + +MK   D
Sbjct: 162 IVMLGKCKQPEKAHELFQAMIHEGCDVSHESYTALLSAYGRSGLLDKAFSLLEEMKRNPD 221

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYSILIKSC +   FD  + +L+ M  LGI  + +TYNT+ID YGKAK FEEME
Sbjct: 222 CQPDVHTYSILIKSCVQVFAFDKAKTLLSNMESLGISPNTITYNTLIDAYGKAKMFEEME 281

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           ++   M+    C PD++T+NS + A+G SG IE MEK Y +F   G++  I T N+L  S
Sbjct: 282 ATLVKMLSQQNCEPDVWTMNSTLRAFGISGQIETMEKCYEKFQGAGIEPSIMTFNVLLDS 341

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AG Y KM +VM++MQK  +  T++TYNIVI+ FG+AG +++ME  F+ M+   +KP+
Sbjct: 342 YGKAGDYKKMSAVMEYMQKYHYSWTIITYNIVIDAFGRAGDLKQMEYLFRLMRSERIKPS 401

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSLV AY +A    K++ +LR +ENSD+ LDT FFNC++ AYG+ G   +M  + +
Sbjct: 402 CVTLCSLVRAYGQAEKPEKIEGVLRFIENSDITLDTVFFNCLVDAYGRMGCFAEMKGVLI 461

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
            M+++   PD IT+ TMI+AY++ GMT+  + L++
Sbjct: 462 LMEQKGYRPDKITYRTMIKAYSSKGMTKHVKELQD 496


>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Cucumis sativus]
          Length = 456

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 168/346 (48%), Positives = 242/346 (69%), Gaps = 1/346 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +VMLGKCKQ E+A  LF+ M+ +G + S + YTAL+SAY +SGLLDEAFS +N+MK+  D
Sbjct: 107 IVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMKNSPD 166

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYSILIKSC +   F+  + +L++M   GI+ + +TYNT ID YGKAK F EME
Sbjct: 167 CQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEME 226

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S    M+   GC PD++T+NS + A+G SG +E MEK Y +F   G++  IQT NIL  S
Sbjct: 227 SILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDS 286

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+A  Y+KM +VM++MQK  +  T+VTYNIVI+ FG+AG++++ME  F+ M+   +KP+
Sbjct: 287 YGKAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPS 346

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSLV AY +AG   K+DS+L  VENSD++LDT F+NC++ AYG+     +M ++  
Sbjct: 347 CVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLG 406

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346
            M++R C PD  T+ TM +AY+  GM   A+ ++ ++I   E S +
Sbjct: 407 MMEQRGCKPDKTTYRTMARAYSDGGMANHAKEIQ-ELITTAEPSKR 451



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 193 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           V + ++++ ++ P    Y  +I   GK    EK  E F++M   G + +  +Y +L+SAY
Sbjct: 86  VFELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAY 145

Query: 252 SKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           S++GL+ +  SIL +++NS D   D   ++ +I +  Q     K   L   M  R   P+
Sbjct: 146 SRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPN 205

Query: 311 NITFATMIQAYNALGM 326
            IT+ T I AY    M
Sbjct: 206 TITYNTFIDAYGKAKM 221


>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Cucumis sativus]
          Length = 511

 Score =  348 bits (892), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 168/346 (48%), Positives = 242/346 (69%), Gaps = 1/346 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +VMLGKCKQ E+A  LF+ M+ +G + S + YTAL+SAY +SGLLDEAFS +N+MK+  D
Sbjct: 162 IVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYSRSGLLDEAFSILNEMKNSPD 221

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYSILIKSC +   F+  + +L++M   GI+ + +TYNT ID YGKAK F EME
Sbjct: 222 CQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEME 281

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S    M+   GC PD++T+NS + A+G SG +E MEK Y +F   G++  IQT NIL  S
Sbjct: 282 SILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDS 341

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+A  Y+KM +VM++MQK  +  T+VTYNIVI+ FG+AG++++ME  F+ M+   +KP+
Sbjct: 342 YGKAESYEKMSAVMEYMQKYHYSWTIVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPS 401

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSLV AY +AG   K+DS+L  VENSD++LDT F+NC++ AYG+     +M ++  
Sbjct: 402 CVTLCSLVRAYGQAGKREKIDSVLNLVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLG 461

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346
            M++R C PD  T+ TM +AY+  GM   A+ ++ ++I   E S +
Sbjct: 462 MMEQRGCKPDKTTYRTMARAYSDGGMANHAKEIQ-ELITTAEPSKR 506



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 193 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           V + ++++ ++ P    Y  +I   GK    EK  E F++M   G + +  +Y +L+SAY
Sbjct: 141 VFELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAY 200

Query: 252 SKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           S++GL+ +  SIL +++NS D   D   ++ +I +  Q     K   L   M  R   P+
Sbjct: 201 SRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPN 260

Query: 311 NITFATMIQAYNALGM 326
            IT+ T I AY    M
Sbjct: 261 TITYNTFIDAYGKAKM 276


>gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Glycine max]
          Length = 515

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 165/334 (49%), Positives = 232/334 (69%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +VMLGKCKQPE+A  LF+ M+ +G     + YTAL+SAY +SGLLD+AFS + +MK+   
Sbjct: 164 IVMLGKCKQPEKAHELFQAMVDEGCVLDCESYTALLSAYSRSGLLDKAFSLLEEMKNTPG 223

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV TYSIL+KSC +   FD I+ +L++M+  GI+ + VTYNT+ID YGKA+KF EME
Sbjct: 224 CQPDVQTYSILLKSCLQVFAFDKIQSLLSDMTNRGIKPNTVTYNTLIDAYGKARKFSEME 283

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S    M+    C PD++T+NS + A+GN G IE MEK Y +F   G++ ++QT NIL  S
Sbjct: 284 SILVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCYEKFQNAGIQPNVQTFNILLDS 343

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+A  Y KM +VM++MQK  +  T+VT+NIVI+ FGKAG +++ME  F+ M+   +KP+
Sbjct: 344 YGKAQDYKKMSAVMEYMQKYHYSWTIVTFNIVIDAFGKAGDLKQMEYLFRLMRSERIKPS 403

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSLV AY++AG   K+  +LR VENSDV+LDT FFNC++ AY + G + +M  +  
Sbjct: 404 CVTLCSLVRAYARAGKPEKISGVLRFVENSDVLLDTVFFNCLVDAYARLGCLAEMKGVLE 463

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
            MK+  C PD +T+ TMI+ Y   GM   A+ L 
Sbjct: 464 MMKQNGCKPDIVTYRTMIKTYTYKGMDSHAKELR 497



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 41/235 (17%)

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
           A ++E     F  + E     PD      +I   G     EK  + +      G   D +
Sbjct: 134 ALRWESALKVFELLHEQIWYKPDTGVYIKLIVMLGKCKQPEKAHELFQAMVDEGCVLDCE 193

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
           +   L  +Y R+G+ DK  S+++ M+      P V TY+I++++  +    +K++     
Sbjct: 194 SYTALLSAYSRSGLLDKAFSLLEEMKNTPGCQPDVQTYSILLKSCLQVFAFDKIQSLLSD 253

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M +RG+KPN++T                                   +N +I AYG+A  
Sbjct: 254 MTNRGIKPNTVT-----------------------------------YNTLIDAYGKARK 278

Query: 292 VEKMGELFLTM-KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
             +M  + + M  +R+C PD  T  + ++A+  +G  E  +    K     +N+G
Sbjct: 279 FSEMESILVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCYEKF----QNAG 329



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/277 (21%), Positives = 97/277 (35%), Gaps = 78/277 (28%)

Query: 2   VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           ++L  C Q    ++   L   M + G+KP+   Y  L+ AYG++    E  S + +M + 
Sbjct: 233 ILLKSCLQVFAFDKIQSLLSDMTNRGIKPNTVTYNTLIDAYGKARKFSEMESILVEMLAD 292

Query: 59  SDCKPDVYT-----------------------------------YSILIKSCTKFHRFDL 83
             C+PDV+T                                   ++IL+ S  K   +  
Sbjct: 293 RYCQPDVWTMNSTLRAFGNIGQIETMEKCYEKFQNAGIQPNVQTFNILLDSYGKAQDYKK 352

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM----------------- 126
           +  ++  M       + VT+N +ID +GKA   ++ME  F  M                 
Sbjct: 353 MSAVMEYMQKYHYSWTIVTFNIVIDAFGKAGDLKQMEYLFRLMRSERIKPSCVTLCSLVR 412

Query: 127 -----------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
                            VE+     D    N ++ AY   G + +M+         G K 
Sbjct: 413 AYARAGKPEKISGVLRFVENSDVLLDTVFFNCLVDAYARLGCLAEMKGVLEMMKQNGCKP 472

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           DI T   + K+Y   GM    + +      R   PTV
Sbjct: 473 DIVTYRTMIKTYTYKGMDSHAKEL------RELLPTV 503


>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
 gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
          Length = 492

 Score =  343 bits (879), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 159/321 (49%), Positives = 228/321 (71%), Gaps = 1/321 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + MLGKCK+PE+A  LF+ M+ +G  P+++ YTALVSAY +SG   EAF+ ++ MK    
Sbjct: 148 ITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTALVSAYSRSGRFHEAFNLLDRMKDTPG 207

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV TYSILIKSC   + F+ ++ +L +M+  GI  + VTYNT+ID YGKA++F EME
Sbjct: 208 CQPDVKTYSILIKSCLHAYDFEKVKSLLTDMARAGIRPNTVTYNTLIDAYGKARRFPEME 267

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+   M+ S  C PDI+T+NS + A+G+SG IE ME  Y +F   G+  +I+T NIL  S
Sbjct: 268 STLLKML-SQNCKPDIWTMNSTLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDS 326

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+A MY+KM +VM++MQK ++  T+VTYN+VI+ FG+AG +E+ME  F+ MK   +KPN
Sbjct: 327 YGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPN 386

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CS+V AY +AG + K+ ++LR VENSD+ LD  FFNC++ AYG+ G + +M ++  
Sbjct: 387 CVTLCSVVRAYGRAGEVKKIKTVLRIVENSDITLDIVFFNCLVDAYGRVGCLAEMWDILD 446

Query: 301 TMKERHCVPDNITFATMIQAY 321
            MKE  C PD +T ATMI+ +
Sbjct: 447 LMKEHRCKPDKVTCATMIKWF 467



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 136/280 (48%)

Query: 46  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
           D A      M+     +P +  Y  LI    K  + +   ++   M   G   +  +Y  
Sbjct: 122 DSALKVFELMRDQVWYRPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTA 181

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           ++  Y ++ +F E  +    M ++ GC PD+ T + +I +  ++ + EK++    +    
Sbjct: 182 LVSAYSRSGRFHEAFNLLDRMKDTPGCQPDVKTYSILIKSCLHAYDFEKVKSLLTDMARA 241

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G++ +  T N L  +YG+A  + +M S +  M  +   P + T N  +  FG +G IE M
Sbjct: 242 GIRPNTVTYNTLIDAYGKARRFPEMESTLLKMLSQNCKPDIWTMNSTLRAFGSSGQIETM 301

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           E  ++K +  G+ PN  TY  L+ +Y KA +  K+ +++  ++          +N +I A
Sbjct: 302 ESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDA 361

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           +G+AGD+E+M  +F  MK     P+ +T  ++++AY   G
Sbjct: 362 FGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAG 401



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 37/190 (19%)

Query: 187 YDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           +D    V + M+ + ++ P +  Y  +I   GK    EK  E F+ M   G  PN  +Y 
Sbjct: 121 WDSALKVFELMRDQVWYRPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYT 180

Query: 246 SLVSAYSKAGLIM------------------------------------KVDSILRQVEN 269
           +LVSAYS++G                                       KV S+L  +  
Sbjct: 181 ALVSAYSRSGRFHEAFNLLDRMKDTPGCQPDVKTYSILIKSCLHAYDFEKVKSLLTDMAR 240

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
           + +  +T  +N +I AYG+A    +M    L M  ++C PD  T  + ++A+ + G  E 
Sbjct: 241 AGIRPNTVTYNTLIDAYGKARRFPEMESTLLKMLSQNCKPDIWTMNSTLRAFGSSGQIET 300

Query: 330 AQNLENKMIA 339
            ++   K  A
Sbjct: 301 MESCYEKFQA 310


>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
 gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
 gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
 gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
          Length = 511

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 157/328 (47%), Positives = 228/328 (69%), Gaps = 1/328 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + MLGKCKQPE+A  LF+ M+ +G  P+++ YTALVSAY +SG  D AFS +  MK+   
Sbjct: 167 ITMLGKCKQPERAHELFQAMVDEGCAPNLESYTALVSAYSRSGRFDRAFSLLEQMKATPG 226

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV TYSILIKSC   + F+ ++ ++ +M+  GI  + VTYNT+ID YGKA +F EME
Sbjct: 227 CRPDVQTYSILIKSCLHAYDFERVKYLMEDMARAGIRPNVVTYNTLIDAYGKAGRFAEME 286

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+   M+ +  C PD++T+NS + A+G SG IE ME  Y +F   G+  +I+T NIL  S
Sbjct: 287 STLLEML-TENCKPDVWTMNSTLRAFGGSGQIETMESCYEKFQASGISPNIKTYNILLDS 345

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+A MY+KM +VM++MQK ++  T+VTYN+VI+ FG+AG +E+ME  F+ MK   +KPN
Sbjct: 346 YGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPN 405

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSLV AY +AG + K+ ++LR VENSD+ LD  FFNC++ A+G+ G + +M ++  
Sbjct: 406 CVTLCSLVRAYGRAGDVKKIKTVLRIVENSDITLDIVFFNCLVDAFGRVGCLAEMWDVLD 465

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTE 328
            MK + C PD +T  TMI+ +   G+ +
Sbjct: 466 IMKLQRCKPDKVTCTTMIKWFLIKGIDD 493



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 137/280 (48%)

Query: 46  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
           D A    + M+     +P V  Y  LI    K  + +   ++   M   G   +  +Y  
Sbjct: 141 DSALKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTA 200

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           ++  Y ++ +F+   S    M  + GC PD+ T + +I +  ++ + E+++    +    
Sbjct: 201 LVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMARA 260

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G++ ++ T N L  +YG+AG + +M S +  M      P V T N  +  FG +G IE M
Sbjct: 261 GIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGSGQIETM 320

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           E  ++K +  G+ PN  TY  L+ +Y KA +  K+ +++  ++          +N +I A
Sbjct: 321 ESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDA 380

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           +G+AGD+E+M  +F  MK     P+ +T  ++++AY   G
Sbjct: 381 FGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAG 420



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 120/265 (45%), Gaps = 37/265 (13%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT--- 67
           E+   L E M   G++P+V  Y  L+ AYG++G   E  ST+ +M +  +CKPDV+T   
Sbjct: 248 ERVKYLMEDMARAGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLT-ENCKPDVWTMNS 306

Query: 68  --------------------------------YSILIKSCTKFHRFDLIEKILAEMSYLG 95
                                           Y+IL+ S  K   ++ +  ++  M    
Sbjct: 307 TLRAFGGSGQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYY 366

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
              + VTYN +ID +G+A   E+ME  F  M +S    P+  TL S++ AYG +G+++K+
Sbjct: 367 YSWTIVTYNVVIDAFGRAGDLEQMEYIFRLM-KSERIKPNCVTLCSLVRAYGRAGDVKKI 425

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           +          +  DI   N L  ++GR G   +M  V+D M+ +   P  VT   +I+ 
Sbjct: 426 KTVLRIVENSDITLDIVFFNCLVDAFGRVGCLAEMWDVLDIMKLQRCKPDKVTCTTMIKW 485

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPN 240
           F   G  +   +Y + +K    K N
Sbjct: 486 FLIKGIDDHRVQYLRDLKDGRSKDN 510



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 37/190 (19%)

Query: 187 YDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           +D    V D M+ + ++ P V  Y  +I   GK    E+  E F+ M   G  PN  +Y 
Sbjct: 140 WDSALKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYT 199

Query: 246 SLVSAYSKAGLIMKVDSILRQ----------VENSDVILDTPF----------------- 278
           +LVSAYS++G   +  S+L Q          V+   +++ +                   
Sbjct: 200 ALVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMAR 259

Query: 279 ---------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
                    +N +I AYG+AG   +M    L M   +C PD  T  + ++A+   G  E 
Sbjct: 260 AGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGSGQIET 319

Query: 330 AQNLENKMIA 339
            ++   K  A
Sbjct: 320 MESCYEKFQA 329


>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
          Length = 492

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 158/328 (48%), Positives = 226/328 (68%), Gaps = 1/328 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + MLGKCKQPE+A  LF+ M+ +G  P++  YTALVS Y +SG   EAF  ++ MK    
Sbjct: 148 ITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTALVSTYSRSGRFREAFDLLDRMKDTPG 207

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV TYSILIKSC   + F+ ++ +LA+M+  GI  + VTYNT+ID YGKA +F EME
Sbjct: 208 CQPDVQTYSILIKSCLHAYDFEKVKSLLADMARAGIPPNTVTYNTLIDAYGKAGRFAEME 267

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+   M+ S  C PD++T+NS + A+G+SG IE ME  Y +F   G+  +I+T NIL  S
Sbjct: 268 STLLKML-SQNCKPDVWTMNSTLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDS 326

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+A MY+KM +VM++MQK ++  T+VTYN+VI+ FG+AG +E+ME  F+ MK   +KPN
Sbjct: 327 YGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPN 386

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CS+V AY +AG + K+ + LR +ENSD+ LD  FFNC++ AYG+ G + +M ++  
Sbjct: 387 CVTLCSVVRAYGRAGEVKKIKTALRIIENSDITLDIVFFNCLVDAYGRVGCLAEMWDILD 446

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTE 328
            MKE  C PD +T  TMI+ +   G+ +
Sbjct: 447 LMKEHRCKPDKVTCTTMIKWFLIKGIDD 474



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 135/280 (48%)

Query: 46  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
           D A      M+     KP +  Y  LI    K  + +   ++   M   G   +  +Y  
Sbjct: 122 DSALKVFELMRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTA 181

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           ++  Y ++ +F E       M ++ GC PD+ T + +I +  ++ + EK++    +    
Sbjct: 182 LVSTYSRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDFEKVKSLLADMARA 241

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G+  +  T N L  +YG+AG + +M S +  M  +   P V T N  +  FG +G IE M
Sbjct: 242 GIPPNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNSTLRAFGSSGQIETM 301

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           E  ++K +  G+ PN  TY  L+ +Y KA +  K+ +++  ++          +N +I A
Sbjct: 302 ESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDA 361

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           +G+AGD+E+M  +F  MK     P+ +T  ++++AY   G
Sbjct: 362 FGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAG 401



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 113/258 (43%), Gaps = 37/258 (14%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT--- 67
           E+   L   M   G+ P+   Y  L+ AYG++G   E  ST+  M S  +CKPDV+T   
Sbjct: 229 EKVKSLLADMARAGIPPNTVTYNTLIDAYGKAGRFAEMESTLLKMLS-QNCKPDVWTMNS 287

Query: 68  --------------------------------YSILIKSCTKFHRFDLIEKILAEMSYLG 95
                                           Y+IL+ S  K   ++ +  ++  M    
Sbjct: 288 TLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYY 347

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
              + VTYN +ID +G+A   E+ME  F  M +S    P+  TL S++ AYG +G ++K+
Sbjct: 348 YSWTIVTYNVVIDAFGRAGDLEQMEYIFRLM-KSERIKPNCVTLCSVVRAYGRAGEVKKI 406

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           +          +  DI   N L  +YGR G   +M  ++D M++    P  VT   +I+ 
Sbjct: 407 KTALRIIENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCTTMIKW 466

Query: 216 FGKAGHIEKMEEYFKKMK 233
           F   G  +   +Y + +K
Sbjct: 467 FLIKGIDDHRVQYLRDLK 484


>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
           chloroplastic-like [Brachypodium distachyon]
          Length = 502

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 156/328 (47%), Positives = 227/328 (69%), Gaps = 1/328 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + MLGKCKQP +A  LF+ M+ +G  P+++ YTALVSAY +SG  D AFS ++ MK+   
Sbjct: 158 ITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALVSAYSRSGSFDRAFSLLDRMKATPG 217

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV TYSILIKSC   + FD ++ +LA+M+  GI  + VTYNT++D YGKA +F EME
Sbjct: 218 CRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPNTVTYNTLVDAYGKAGRFAEME 277

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+   M+ S  C PD++T+NS + A+G+SG IE ME  Y +F   G+  +I+T NIL  S
Sbjct: 278 STLLEML-SEKCKPDVWTMNSTLRAFGSSGQIEMMESCYEKFQASGISPNIKTYNILLDS 336

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+A MY+KM +VM++MQK ++  T+VTYN+VI+ FG+AG +E+ME  F+ MK   +KPN
Sbjct: 337 YGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSDRIKPN 396

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSL+ AY +A  + K++++LR +ENSD  LD  FFNC++ AYG+ G + +M ++  
Sbjct: 397 CVTLCSLIRAYGRADQVKKIETVLRIIENSDTTLDIVFFNCLVDAYGRVGCLAEMWDVLN 456

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTE 328
            MK     PD +T  TMI+ +   G+ +
Sbjct: 457 MMKLERVSPDKVTCTTMIKWFLVKGIDD 484



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 109/253 (43%), Gaps = 37/253 (14%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT-------- 67
           L   M   G++P+   Y  LV AYG++G   E  ST+ +M S   CKPDV+T        
Sbjct: 244 LLADMACGGIRPNTVTYNTLVDAYGKAGRFAEMESTLLEMLS-EKCKPDVWTMNSTLRAF 302

Query: 68  ---------------------------YSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 100
                                      Y+IL+ S  K   ++ +  ++  M       + 
Sbjct: 303 GSSGQIEMMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTI 362

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           VTYN +ID +G+A   E+ME  F  M +S    P+  TL S+I AYG +  ++K+E    
Sbjct: 363 VTYNVVIDAFGRAGDLEQMEYIFRLM-KSDRIKPNCVTLCSLIRAYGRADQVKKIETVLR 421

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
                    DI   N L  +YGR G   +M  V++ M+     P  VT   +I+ F   G
Sbjct: 422 IIENSDTTLDIVFFNCLVDAYGRVGCLAEMWDVLNMMKLERVSPDKVTCTTMIKWFLVKG 481

Query: 221 HIEKMEEYFKKMK 233
             +   ++ + +K
Sbjct: 482 IDDHRVQHLRDLK 494



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 43/249 (17%)

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
           F+L+   +    Y+GI      Y  +I   GK K+  +    F AMV+ G C P++ +  
Sbjct: 138 FELMRDQVWYRPYVGI------YIKLITMLGKCKQPGKAHELFQAMVDEG-CAPNLESYT 190

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           +++SA                                   Y R+G +D+  S++D M+  
Sbjct: 191 ALVSA-----------------------------------YSRSGSFDRAFSLLDRMKAT 215

Query: 201 F-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P V TY+I+I++   A   +K+++    M   G++PN++TY +LV AY KAG   +
Sbjct: 216 PGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPNTVTYNTLVDAYGKAGRFAE 275

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           ++S L ++ +     D    N  + A+G +G +E M   +   +     P+  T+  ++ 
Sbjct: 276 MESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMMESCYEKFQASGISPNIKTYNILLD 335

Query: 320 AYNALGMTE 328
           +Y    M E
Sbjct: 336 SYGKAKMYE 344



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 193 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           V + M+ + ++ P V  Y  +I   GK     K  E F+ M   G  PN  +Y +LVSAY
Sbjct: 137 VFELMRDQVWYRPYVGIYIKLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALVSAY 196

Query: 252 SKAGLIMKVDSIL-RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           S++G   +  S+L R         D   ++ +I +   A D +K+ +L   M      P+
Sbjct: 197 SRSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPN 256

Query: 311 NITFATMIQAYNALG 325
            +T+ T++ AY   G
Sbjct: 257 TVTYNTLVDAYGKAG 271


>gi|224069806|ref|XP_002303044.1| predicted protein [Populus trichocarpa]
 gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 157/335 (46%), Positives = 227/335 (67%), Gaps = 13/335 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +VMLGKCKQP++A  LF+ M+ +G   + + YTAL+SAYG+SGL D+AFS + +MK+  D
Sbjct: 147 IVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGRSGLFDKAFSIMEEMKNTPD 206

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYSILIKSC +   FD ++ +L++M  LGI  + VT             F EME
Sbjct: 207 CRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVT-------------FAEME 253

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           ++   M+    C PD++T+NS I A+G SG +E ME  Y +F   G++ +I+T NIL  S
Sbjct: 254 ATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDS 313

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+AG Y KM +VM++MQ+  +  T+VTYN+VI+ FG+AG +++ME  F+ M+   +KP+
Sbjct: 314 YGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPS 373

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSLV AY +AG   K+ S+LR +ENSDV LDT FFNC++ AYG+     +M E+  
Sbjct: 374 CVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLE 433

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
            M+E+ C PD +T+ TMI+AY+  GMT  A+ L N
Sbjct: 434 LMEEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRN 468



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 35/221 (15%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E  + L E++     +P V    + + A+G SG ++   +     +S +  +P++ T++I
Sbjct: 251 EMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQS-AGIEPNIKTFNI 309

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM---- 126
           L+ S  K   +  +  ++  M       + VTYN +ID +G+A   ++ME  F  M    
Sbjct: 310 LLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSER 369

Query: 127 ------------------------------VESGGCHPDIFTLNSMISAYGNSGNIEKME 156
                                         +E+     D    N ++ AYG      +M+
Sbjct: 370 IKPSCVTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMK 429

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           +        G K D  T   + K+Y   GM    + + + +
Sbjct: 430 EVLELMEEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRNLL 470



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 2/127 (1%)

Query: 193 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           V + ++++ ++ P    Y  +I   GK    +K  + F+ M   G      +Y +L+SAY
Sbjct: 126 VFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAY 185

Query: 252 SKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            ++GL  K  SI+ +++N+ D   D   ++ +I +  Q    +K+  L   M+     P+
Sbjct: 186 GRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPN 245

Query: 311 NITFATM 317
            +TFA M
Sbjct: 246 TVTFAEM 252


>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g48730, chloroplastic; Flags: Precursor
 gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 508

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 154/333 (46%), Positives = 224/333 (67%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +VMLGKCKQPE+A  LF+ M+++G   + +VYTALVSAY +SG  D AF+ +  MKS  +
Sbjct: 157 IVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHN 216

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYSILIKS  +   FD ++ +L++M   GI  + +TYNT+ID YGKAK F EME
Sbjct: 217 CQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEME 276

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+   M+    C PD +T+NS + A+G +G IE ME  Y +F   G++ +I+T NIL  S
Sbjct: 277 STLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDS 336

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG++G Y KM +VM++MQK  +  T+VTYN+VI+ FG+AG +++ME  F+ M+   + P+
Sbjct: 337 YGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPS 396

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSLV AY +A    K+  +LR +ENSD+ LD  FFNC++ AYG+     +M  +  
Sbjct: 397 CVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLE 456

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            M+++   PD IT+ TM++AY   GMT   + L
Sbjct: 457 LMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 489



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 2/136 (1%)

Query: 193 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           V + ++++ ++ P V  Y  +I   GK    EK  E F++M + G   N   Y +LVSAY
Sbjct: 136 VFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAY 195

Query: 252 SKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           S++G      ++L ++++S +   D   ++ +I ++ Q    +K+ +L   M+ +   P+
Sbjct: 196 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPN 255

Query: 311 NITFATMIQAYNALGM 326
            IT+ T+I AY    M
Sbjct: 256 TITYNTLIDAYGKAKM 271


>gi|225432159|ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic [Vitis vinifera]
          Length = 498

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 146/340 (42%), Positives = 222/340 (65%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LGK  QP +A  LF+ M+ +G +P+ ++YTAL+++Y +S L+DEAFS +N MK++  
Sbjct: 151 LVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPR 210

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYS L+K+C    RF+L+E +  EM    I  + VT N ++ GYGKA KF+EME
Sbjct: 211 CQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEME 270

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M+ES    PD++T+N+++S +GN G IE MEKWY +F   G++ + +T NIL  +
Sbjct: 271 KVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGA 330

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM SVM++M+K  F  T  TYN VIE F   G  + ME  F +M+  GMK +
Sbjct: 331 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKAD 390

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L+  Y+ AGL  KV S ++     ++  +T F+N +ISA  +A D+ +M  +F 
Sbjct: 391 TKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLIEMERVFN 450

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            MK++HC PD+ T++ M++AY   GM +   +LE +   M
Sbjct: 451 RMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRM 490


>gi|293330977|ref|NP_001169349.1| uncharacterized protein LOC100383216 [Zea mays]
 gi|30961817|gb|AAP37977.1| PPR2 [Zea mays]
 gi|224028857|gb|ACN33504.1| unknown [Zea mays]
 gi|414883415|tpg|DAA59429.1| TPA: pentatricopeptide repeat 2 [Zea mays]
          Length = 571

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 144/340 (42%), Positives = 217/340 (63%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LG+  QP +A  LF+ ML  G +P+ ++YTAL+ AY +SGLLDEA   +NDMKS   
Sbjct: 224 IVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDEALQLLNDMKSSPL 283

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYS +IK+C    RFDL + +  +M+   I  + VT N ++ GYGKA + ++ME
Sbjct: 284 CQPDVYTYSTIIKACIDAARFDLTDAMYKDMAERSISPNTVTQNIVLSGYGKAGRLDDME 343

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M++S  C PD++T+N ++S +GN G +E ME+WY +F   GV+ + +TLNIL  +
Sbjct: 344 RVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGA 403

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM +VM+ M+K  F  T  TYN VIE F +AG    ME  F +M+  GM+P+
Sbjct: 404 YGKRRMYDKMSAVMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPD 463

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L+  +S+AG   KV  +++  E  DV ++TPF N ++ A  +A D+ +M  +F 
Sbjct: 464 TKTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPVNTPFHNAVLGACARADDLVEMERVFR 523

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            MK   C PD  T++ +++AY   GMT+    L  +  A+
Sbjct: 524 RMKHTQCEPDASTYSILVEAYRKEGMTDKIYALHQENPAL 563



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 1/142 (0%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++ F+ P   TY  +I   G++G   +  + F +M  +G +P    Y +L+ AY ++GL+
Sbjct: 209 EQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLL 268

Query: 258 MKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
            +   +L  +++S +   D   ++ II A   A   +    ++  M ER   P+ +T   
Sbjct: 269 DEALQLLNDMKSSPLCQPDVYTYSTIIKACIDAARFDLTDAMYKDMAERSISPNTVTQNI 328

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           ++  Y   G  +  + + + M+
Sbjct: 329 VLSGYGKAGRLDDMERVLSDML 350


>gi|195616496|gb|ACG30078.1| PPR2 [Zea mays]
          Length = 580

 Score =  307 bits (787), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 144/340 (42%), Positives = 216/340 (63%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LG+  QP +A  LF+ ML  G +P+ ++YTAL+ AY +SGLLDEA   +NDMKS   
Sbjct: 233 IVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDEALQLLNDMKSSPL 292

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYS +IK+C    RFDL + +  +M+   I  + VT N ++ GYGKA + ++ME
Sbjct: 293 CQPDVYTYSTIIKACVDAARFDLTDAMYKDMAERSISPNTVTQNIVLSGYGKAGRLDDME 352

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M++S  C PD++T+N ++S +GN G +E ME+WY +F   GV+ + +TLNIL  +
Sbjct: 353 RVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGA 412

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM +VM+ M+K  F  T  TYN VIE F +AG    ME  F +M+  GM+P+
Sbjct: 413 YGKRRMYDKMSAVMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPD 472

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L+  +S+AG   KV  +++  E  DV  +TPF N ++ A  +A D+ +M  +F 
Sbjct: 473 TKTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPANTPFHNAVLGACARADDLVEMERVFR 532

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            MK   C PD  T++ +++AY   GMT+    L  +  A+
Sbjct: 533 RMKHTQCEPDASTYSILVEAYRKEGMTDKIYALHQENPAL 572



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 1/142 (0%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++ F+ P   TY  +I   G++G   +  + F +M  +G +P    Y +L+ AY ++GL+
Sbjct: 218 EQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLL 277

Query: 258 MKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
            +   +L  +++S +   D   ++ II A   A   +    ++  M ER   P+ +T   
Sbjct: 278 DEALQLLNDMKSSPLCQPDVYTYSTIIKACVDAARFDLTDAMYKDMAERSISPNTVTQNI 337

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           ++  Y   G  +  + + + M+
Sbjct: 338 VLSGYGKAGRLDDMERVLSDML 359


>gi|242047208|ref|XP_002461350.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
 gi|241924727|gb|EER97871.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
          Length = 560

 Score =  307 bits (786), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 145/340 (42%), Positives = 218/340 (64%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LG+  QP +A  LF+ ML  G +P+  +YTAL+ AY +SGLLD+A   +NDMK    
Sbjct: 213 IVLLGRSGQPARAHQLFDEMLQQGCQPTPGLYTALIGAYCRSGLLDDALQLLNDMKGSPL 272

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYS +IK+C    RFDLI+ +  +M+   I  + VT N ++ GYGKA + ++ME
Sbjct: 273 CQPDVYTYSTIIKACVDATRFDLIDVMYKDMAERSIAPNTVTQNIVLSGYGKAGRLDDME 332

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M++S  C PD++T+N ++S +GN G +E MEKWY +F   G++ + +TLNIL  +
Sbjct: 333 KVLSDMLDSTACKPDVWTMNIILSLFGNKGQVELMEKWYEKFRSYGIEPETRTLNILIGA 392

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM +VM++M+K  F  T  TYN VIE F +AG  + ME  F +M+  GMKP+
Sbjct: 393 YGKKRMYDKMSAVMEYMRKLAFPWTTATYNNVIEAFAEAGDAKNMEHTFNQMRSEGMKPD 452

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ +SKAG   KV  +++  E  DV  +T F N I+ A  +A D+ +M  +F 
Sbjct: 453 TKTFCCLINGFSKAGQFHKVVGMVKLAERLDVPANTSFHNAILGACARADDLMEMERVFR 512

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            MK   C PD +T++ +++AY   GMT+    L  +  A+
Sbjct: 513 HMKHTQCDPDAVTYSILVEAYRKEGMTDKIYALHQENPAL 552



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 1/142 (0%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++ F+ P   T+  +I   G++G   +  + F +M  +G +P    Y +L+ AY ++GL+
Sbjct: 198 EQPFYHPKEGTFMKLIVLLGRSGQPARAHQLFDEMLQQGCQPTPGLYTALIGAYCRSGLL 257

Query: 258 MKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                +L  ++ S +   D   ++ II A   A   + +  ++  M ER   P+ +T   
Sbjct: 258 DDALQLLNDMKGSPLCQPDVYTYSTIIKACVDATRFDLIDVMYKDMAERSIAPNTVTQNI 317

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           ++  Y   G  +  + + + M+
Sbjct: 318 VLSGYGKAGRLDDMEKVLSDML 339


>gi|357157771|ref|XP_003577908.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 512

 Score =  307 bits (786), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 142/336 (42%), Positives = 221/336 (65%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++LG+  QP  A  LF  M   G +P+ ++YTAL++AY +SGLLD+A   + DMK+   
Sbjct: 165 LLLLGRSGQPALAHRLFADMQQQGCQPTPELYTALIAAYCRSGLLDDALRLLGDMKAAPL 224

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYS LIK+     RFDL++ +  EM+  G+  + VT N ++ GYG+A + ++ME
Sbjct: 225 CQPDVYTYSTLIKALVDASRFDLVDAMYKEMAERGVAPNTVTQNIVLSGYGRAGRMDDME 284

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              SAM++S    PD++T+N ++S +GNSG ++ MEKWY +F   G++ + +TLNIL  +
Sbjct: 285 KLLSAMLDSTASKPDVWTMNIILSLFGNSGQVDLMEKWYEKFRGYGIEPETRTLNILIGA 344

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM +VM+FM+K  F  T  TYN VIE F +AG  + ME+ F +M+  GMKP+
Sbjct: 345 YGKKRMYDKMSAVMEFMRKLAFPWTTSTYNNVIEAFAEAGDEKNMEQTFNQMRSEGMKPD 404

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ +SKAGL  KV  +++  E  DV  +T F N +++A  +AGD+ +M  +F 
Sbjct: 405 TKTFCCLINGFSKAGLFHKVVGMVKLAERLDVPANTSFHNSVLAACARAGDLVEMERVFR 464

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
            MK   C PD  T++ +++AY   GMT+   +L+ +
Sbjct: 465 HMKHVQCAPDATTYSILVEAYRKEGMTDKVYDLQQE 500


>gi|147820978|emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
          Length = 525

 Score =  307 bits (786), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 146/340 (42%), Positives = 222/340 (65%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LGK  QP +A  LF+ M+ +G +P+ ++YTAL+++Y +S L+DEAFS +N MK++  
Sbjct: 151 LVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPR 210

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYS L+K+C    RF+L+E +  EM    I  + VT N ++ GYGKA KF+EME
Sbjct: 211 CQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEME 270

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M+ES    PD++T+N+++S +GN G IE MEKWY +F   G++ + +T NIL  +
Sbjct: 271 KVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGA 330

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM SVM++M+K  F  T  TYN VIE F   G  + ME  F +M+  GMK +
Sbjct: 331 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKAD 390

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L+  Y+ AGL  KV S ++     ++  +T F+N +ISA  +A D+ +M  +F 
Sbjct: 391 TKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDLIEMERVFN 450

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            MK++HC PD+ T++ M++AY   GM +   +LE +   M
Sbjct: 451 RMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRM 490


>gi|449441652|ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Cucumis sativus]
 gi|449522692|ref|XP_004168360.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Cucumis sativus]
          Length = 496

 Score =  305 bits (780), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 141/334 (42%), Positives = 222/334 (66%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LG+  QP +A LLF+ M+ +  +P+ ++YTAL++AY ++ L+D+AFST+N MK++  
Sbjct: 149 LVLLGRSGQPHRARLLFDTMVQERCEPTPELYTALLAAYCRNNLIDDAFSTLNLMKTLPR 208

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYSILIK+C    RF+++E +  EM+   I  + VT N ++ GYGK  K+++ME
Sbjct: 209 CQPDVYTYSILIKACVDDSRFEIVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQME 268

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M+ES  C PD++T+N ++S +GN G+IE ME+WY +F   G++ + +T NIL  +
Sbjct: 269 KVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEMMERWYEKFRNFGIEPETRTFNILIGA 328

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM SVM++M+K  F  T  TYN VIE F   G  + ME  F++M+  GM+ +
Sbjct: 329 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRAD 388

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ Y+ AGL  KV   ++     ++  +T F+N +ISA  +A D+ +M  +F 
Sbjct: 389 TKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPENTSFYNAVISACAKAEDLMEMDRVFK 448

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
            MK++HC PDN T++ M++AY   GM +    LE
Sbjct: 449 RMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLE 482


>gi|226500056|ref|NP_001147821.1| pentatricopeptide repeat 2 [Zea mays]
 gi|195613946|gb|ACG28803.1| PPR2 [Zea mays]
          Length = 562

 Score =  303 bits (777), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 143/340 (42%), Positives = 216/340 (63%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LG+  QP +A  LF+ ML  G +P+ ++YTAL+ AY +S LLDEA   +NDMKS   
Sbjct: 215 IVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSCLLDEALQLLNDMKSSPL 274

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYS +IK+C    RFDL + +  +M+   I  + VT N ++ GYGKA + ++ME
Sbjct: 275 CQPDVYTYSTIIKACVDAARFDLTDTMYKDMAERSISPNTVTQNIVLSGYGKAGRLDDME 334

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M++S  C PD++T+N ++S +GN G +E ME+WY +F   GV+ + +TLNIL  +
Sbjct: 335 RVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNILIGA 394

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM +VM+ M+K  F  T  TYN VIE F +AG    ME  F +M+  GM+P+
Sbjct: 395 YGKRRMYDKMSAVMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPD 454

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L+  +S+AG   KV  +++  E  DV ++TPF N ++ A  +A D+ +M  +F 
Sbjct: 455 TKTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPVNTPFHNAVLGACARADDLVEMERVFR 514

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            MK   C PD  T++ +++AY   GMT+    L  +  A+
Sbjct: 515 RMKHTQCEPDASTYSILVEAYRKEGMTDKIYALHQENPAL 554


>gi|224112076|ref|XP_002316075.1| predicted protein [Populus trichocarpa]
 gi|222865115|gb|EEF02246.1| predicted protein [Populus trichocarpa]
          Length = 434

 Score =  303 bits (776), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 219/336 (65%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LG+C QP++A  LF+ M+ +G++P+ ++YTAL++AY ++ L+DE FS IN MKS+  
Sbjct: 94  LVLLGRCGQPQRAHQLFDEMVEEGIEPTTELYTALLAAYCRNNLIDEGFSIINQMKSLPR 153

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYS L+K+C    RF+LI+ +  EM    I  + VT N ++ GYG+   +++ME
Sbjct: 154 CQPDVYTYSTLLKACVDASRFELIDTLYQEMDERLISPNTVTQNVVLSGYGRVGMYDQME 213

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M+ES  C PD++T+N ++S +GN G I+ ME+WY +F   G++ + +T NIL  +
Sbjct: 214 RVLSEMLESAACKPDVWTMNIILSVFGNEGQIDLMERWYEKFRNFGIEPETRTFNILIGA 273

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM SVM++M+K  F  T  TYN VIE F   G  + ME  F +M+   MK +
Sbjct: 274 YGKKRMYDKMSSVMEYMRKVQFPWTTSTYNNVIEAFADVGDAKNMEYAFDQMRAESMKAD 333

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ Y+ AGL  KV S ++     ++  +T FFN +ISA  +A D+ +M  +F 
Sbjct: 334 TKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTSFFNAVISACAKADDLMEMERVFK 393

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
            MK++ C PD+ T++ M++AY   GM +    LE +
Sbjct: 394 RMKDKQCPPDSRTYSIMVEAYRKEGMNDKIYYLEQE 429


>gi|255556562|ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541630|gb|EEF43179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 491

 Score =  301 bits (771), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 144/340 (42%), Positives = 220/340 (64%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LG+  QP++A  LF+ M+ +G++P+ ++YTAL++AY ++ L DEAFS +  MK++  
Sbjct: 137 LVLLGRTGQPQRAHQLFDEMVEEGIEPTAELYTALLAAYCRNHLTDEAFSILQQMKTLPR 196

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C PDVYTYS L+K+C    RF+L+E +  EM    I  + VT N ++ GYGKA  +++ME
Sbjct: 197 CLPDVYTYSTLLKACVDASRFELVEALYQEMGERLITPNTVTQNIVLSGYGKAGMYDQME 256

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M+ES  C PD++T+N ++S +GN G I+ MEKWY +F   G++ + +T NIL  +
Sbjct: 257 RVLSGMLESTECKPDVWTMNIILSVFGNKGQIDLMEKWYEKFRSFGIEPETRTFNILIGA 316

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM SVM+FM+K  F  T  TYN VIE F  AG ++ ME  F +M+  GMK +
Sbjct: 317 YGKKRMYDKMSSVMEFMRKLQFPWTTSTYNNVIEAFAVAGDVKHMEYTFDQMRAEGMKAD 376

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ Y+ AGL  KV S ++     ++  +T F+N IISA  +A D+ +M  +F 
Sbjct: 377 TKTFCCLINGYANAGLFHKVISSVQLATKFEIPENTTFYNAIISACAKAEDLMEMERVFK 436

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            MK+  C PD+ T++ M++AY   GM +    LE +   M
Sbjct: 437 RMKDNQCQPDSTTYSIMVEAYKREGMNDKVYYLEQEKQGM 476


>gi|15230719|ref|NP_187294.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207273|sp|Q9SQU6.1|PP216_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g06430, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2750; Flags: Precursor
 gi|6437546|gb|AAF08573.1|AC011623_6 unknown protein [Arabidopsis thaliana]
 gi|20466300|gb|AAM20467.1| unknown protein [Arabidopsis thaliana]
 gi|30387593|gb|AAP31962.1| At3g06430 [Arabidopsis thaliana]
 gi|332640870|gb|AEE74391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 486

 Score =  300 bits (769), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 145/349 (41%), Positives = 223/349 (63%), Gaps = 7/349 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LGK  QP +A  LF+ ML +GL+P+V++YTAL++AY +S L+D+AFS ++ MKS   
Sbjct: 131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYS L+K+C    +FDL++ +  EM    I  + VT N ++ GYG+  +F++ME
Sbjct: 191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M+ S  C PD++T+N ++S +GN G I+ ME WY +F   G++ + +T NIL  S
Sbjct: 251 KVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGS 310

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM SVM++M+K  F  T  TYN +IE F   G  + ME  F +M+  GMK +
Sbjct: 311 YGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKAD 370

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ Y+ AGL  KV S ++     ++  +T F+N +ISA  +A D+ +M  +++
Sbjct: 371 TKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYI 430

Query: 301 TMKERHCVPDNITFATMIQAYNALGMT-------EAAQNLENKMIAMKE 342
            MKER CV D+ TF  M++AY   GM        +  Q L ++ +A KE
Sbjct: 431 RMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRTVATKE 479


>gi|356565453|ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 488

 Score =  300 bits (769), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 147/346 (42%), Positives = 220/346 (63%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LGK  QP +A  LF  M+ +GL+P+ ++YTAL++AY +S ++DEAFS +N+MK +  
Sbjct: 133 IVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALLAAYCRSNMIDEAFSVLNEMKKLPR 192

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYS LIK C    +FDL+E +  EM+   I  + VT N ++ GYGKA  F++ME
Sbjct: 193 CQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSIMPNTVTQNIVLGGYGKAGMFDQME 252

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S+M+ S  C PD++T+N++IS +GN G I+ MEKWY +F   G++ + +T NIL  +
Sbjct: 253 KVLSSMLLSTTCKPDVWTMNTIISVFGNMGQIDMMEKWYEKFRYFGIEPETRTFNILIGA 312

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM SVM++M+K  F  T  TYN VIE F  AG  + ME  F +M+  GMK +
Sbjct: 313 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKAD 372

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T C L++ Y+ AGL  KV S +R     ++  +  F+N ++SA  +A D+ +M  +F 
Sbjct: 373 TKTLCCLINGYANAGLFHKVISSVRLAGKLEIPENITFYNAVLSACAKAEDLMEMERVFK 432

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346
            MK+  C PD+ T+  MI+AY   GM +    LE +   M  +  K
Sbjct: 433 RMKDSQCQPDDTTYTIMIEAYRKEGMNDKIYYLEQEKQTMMTDDKK 478



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 1/281 (0%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A    + ++  +  +P   TY  LI    K  +     ++   M   G+E +   Y  +
Sbjct: 108 QALQVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTAL 167

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y ++   +E  S  + M +   C PD+FT +++I    ++   + +E  Y E     
Sbjct: 168 LAAYCRSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERS 227

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           +  +  T NI+   YG+AGM+D+M  V+  M       P V T N +I  FG  G I+ M
Sbjct: 228 IMPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLLSTTCKPDVWTMNTIISVFGNMGQIDMM 287

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           E++++K ++ G++P + T+  L+ AY K  +  K+ S++  +        T  +N +I A
Sbjct: 288 EKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEA 347

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +  AGD + M   F  M+      D  T   +I  Y   G+
Sbjct: 348 FADAGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGL 388


>gi|218192673|gb|EEC75100.1| hypothetical protein OsI_11265 [Oryza sativa Indica Group]
          Length = 588

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 137/328 (41%), Positives = 216/328 (65%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++LG+  QP +A  LF+ ML  G +P+ ++YTAL++AY ++GLLD+AF  + DMK+   
Sbjct: 154 LLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPV 213

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYS +IK+C    RFD+++ +  +M+   I  + VT N ++ GYG+A + ++ME
Sbjct: 214 CQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDME 273

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              SAM++S    PD++T+N ++S +GN G IE MEKWY +F   G++ + +TLNIL  +
Sbjct: 274 KVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGA 333

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM +VM++M+K  F  T  T+N VIE F  AG  + ME  F +M+  GMKP+
Sbjct: 334 YGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPD 393

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ +  AGL  KV  +++  E   V +DT F N ++ A  +A D+ +M  +F+
Sbjct: 394 TKTFCCLINGFGNAGLFHKVVGMVKLAERLGVPMDTTFHNAVLMACVKAEDLMEMERVFM 453

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTE 328
            MK+  CVPD  T++ ++ AY   GMT+
Sbjct: 454 RMKQIQCVPDATTYSILVGAYRKEGMTD 481



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 39/256 (15%)

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  EM   G + +   Y  +I  Y +    ++     + M  S  C PD++T +++I A 
Sbjct: 169 LFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKAC 228

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPT 205
            ++   + ++  Y +     +  +  T NI+   YGRAG  D M  V+  M       P 
Sbjct: 229 VDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPD 288

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V T NI++  FG  G IE ME++++K +  G++P + T                      
Sbjct: 289 VWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRT---------------------- 326

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
                         N +I AYG+    +KM  +   M++        TF  +I+A+   G
Sbjct: 327 -------------LNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAG 373

Query: 326 MTEAAQNLENKMIAMK 341
               A+N+E+    M+
Sbjct: 374 ---DAKNMEHTFNQMR 386



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 4/151 (2%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++ F+ P   T+  ++   G++G   +    F +M  +G +P    Y +L++AY + GL+
Sbjct: 139 EQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLL 198

Query: 258 MKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                +L  ++ S V   D   ++ II A   A   + +  ++  M +R   P+ +T   
Sbjct: 199 DDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNI 258

Query: 317 MIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
           ++  Y   G  +   ++E  + AM +++  K
Sbjct: 259 VLSGYGRAGRLD---DMEKVLSAMLDSTTSK 286


>gi|356564951|ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 488

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 145/346 (41%), Positives = 220/346 (63%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LGK  QP +A  LF  M+ +GL+P+ ++YTAL++AY +S ++DEAFS +N+MK +  
Sbjct: 133 IVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALLAAYCRSNMIDEAFSVLNEMKKLPL 192

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYS LIK C    +FDL++ +  EM+   I  + VT N ++ GYGKA  F++ME
Sbjct: 193 CQPDVFTYSTLIKVCVDAFKFDLVQLLYEEMAERSITPNTVTQNIVLGGYGKAGMFDQME 252

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S+M++S  C PD++T+N++IS +GN G I+  EKWY +F   G++ + +T NIL  +
Sbjct: 253 KVLSSMLQSTTCKPDVWTMNTIISVFGNMGQIDMTEKWYEKFRYFGIEPETRTFNILIGA 312

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM SVM++M+K  F  T  TYN VIE F  AG  + ME  F +M+  GMK +
Sbjct: 313 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKAD 372

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T C L++ Y+ AGL  KV S +R     ++  +  F+N ++SA  +A D+ +M  +F 
Sbjct: 373 TKTLCCLINGYANAGLFHKVISSVRLAGKLEIPENITFYNAVLSACAKAEDLMEMERVFK 432

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346
            MK+  C PD+ T+  MI+AY   GM +    LE +   M  +  K
Sbjct: 433 RMKDSQCQPDDTTYTIMIEAYRKEGMNDKIYYLEQEKQTMMTDDKK 478



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 71/148 (47%), Gaps = 2/148 (1%)

Query: 193 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           V D ++++ F+ P   T   +I   GK+G   +  + F  M   G++P    Y +L++AY
Sbjct: 112 VFDMLREQTFYQPKEGTCMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALLAAY 171

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPF-FNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            ++ +I +  S+L +++   +     F ++ +I     A   + +  L+  M ER   P+
Sbjct: 172 CRSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVQLLYEEMAERSITPN 231

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
            +T   ++  Y   GM +  + + + M+
Sbjct: 232 TVTQNIVLGGYGKAGMFDQMEKVLSSML 259


>gi|115452625|ref|NP_001049913.1| Os03g0309800 [Oryza sativa Japonica Group]
 gi|108707769|gb|ABF95564.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
 gi|108707770|gb|ABF95565.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
 gi|108707771|gb|ABF95566.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
 gi|113548384|dbj|BAF11827.1| Os03g0309800 [Oryza sativa Japonica Group]
 gi|125586018|gb|EAZ26682.1| hypothetical protein OsJ_10586 [Oryza sativa Japonica Group]
 gi|215686360|dbj|BAG87621.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215741099|dbj|BAG97594.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767065|dbj|BAG99293.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767110|dbj|BAG99338.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 501

 Score =  297 bits (761), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 135/328 (41%), Positives = 215/328 (65%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++LG+  QP +A  LF+ ML  G +P+ ++YTAL++AY ++GLLD+AF  + DMK+   
Sbjct: 154 LLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPV 213

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYS +IK+C    RFD+++ +  +M+   I  + VT N ++ GYG+A + ++ME
Sbjct: 214 CQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDME 273

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              SAM++S    PD++T+N ++S +GN G IE MEKWY +F   G++ + +TLNIL  +
Sbjct: 274 KVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGA 333

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM +VM++M+K  F  T  T+N VIE F  AG  + ME  F +M+  GMKP+
Sbjct: 334 YGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPD 393

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ +  AGL  KV  +++  E   V +DT F N ++    +A D+ +M  +F+
Sbjct: 394 TKTFCCLINGFGNAGLFHKVVGMVKLAERLGVPMDTTFHNAVLMTCVKAEDLMEMERVFM 453

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTE 328
            MK+  C+PD  T++ ++ AY   GMT+
Sbjct: 454 RMKQIQCIPDATTYSILVGAYRKEGMTD 481



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 39/256 (15%)

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  EM   G + +   Y  +I  Y +    ++     + M  S  C PD++T +++I A 
Sbjct: 169 LFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKAC 228

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPT 205
            ++   + ++  Y +     +  +  T NI+   YGRAG  D M  V+  M       P 
Sbjct: 229 VDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPD 288

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V T NI++  FG  G IE ME++++K +  G++P + T                      
Sbjct: 289 VWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRT---------------------- 326

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
                         N +I AYG+    +KM  +   M++        TF  +I+A+   G
Sbjct: 327 -------------LNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAG 373

Query: 326 MTEAAQNLENKMIAMK 341
               A+N+E+    M+
Sbjct: 374 ---DAKNMEHTFNQMR 386



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 4/151 (2%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++ F+ P   T+  ++   G++G   +    F +M  +G +P    Y +L++AY + GL+
Sbjct: 139 EQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLL 198

Query: 258 MKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                +L  ++ S V   D   ++ II A   A   + +  ++  M +R   P+ +T   
Sbjct: 199 DDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNI 258

Query: 317 MIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
           ++  Y   G  +   ++E  + AM +++  K
Sbjct: 259 VLSGYGRAGRLD---DMEKVLSAMLDSTTSK 286


>gi|357479161|ref|XP_003609866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510921|gb|AES92063.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  297 bits (760), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 140/340 (41%), Positives = 221/340 (65%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LGK  QP++A  LF  M+ +G  P+ ++YTAL++AY +S ++DEA S +++MK+   
Sbjct: 145 IVLLGKSGQPQRAHQLFTAMIEEGCDPTPELYTALLAAYCRSNMIDEALSILDEMKNHPL 204

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYS LIK+C    +F+LIE +  EM+   I  + VT N +++GYGKA  F++ME
Sbjct: 205 CQPDVFTYSTLIKACVDIFKFELIELLYEEMAQRSIMPNTVTQNIVLNGYGKAGMFDQME 264

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M++S  C PD++T+N++I  +GN G I+ MEKWY +F   G++ + +T NIL  S
Sbjct: 265 KVLSGMLQSADCKPDVWTMNTIIGVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGS 324

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM SVM++M+K  F  T  TYN VIE F +AG  + ME  F +M+  GM+ +
Sbjct: 325 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAEAGDAKNMEYTFNQMRSEGMRAD 384

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L+  ++ AGL  KV S ++     ++ L+T F+N ++SA  +A D+ +M  +F+
Sbjct: 385 TKTFCCLIKGFANAGLFHKVISSVQLAAKLEIPLNTAFYNAVLSACAKAEDLMEMDRVFM 444

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            MK+  C  D+ T++ M++AY   GM +    LE +   M
Sbjct: 445 RMKDTQCPLDDTTYSIMVEAYRKEGMNDKIYYLEQEKQTM 484



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 1/281 (0%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A  T++ ++  S  +P   TY  LI    K  +     ++   M   G + +   Y  +
Sbjct: 120 QALETLDMLREQSFYQPREGTYMKLIVLLGKSGQPQRAHQLFTAMIEEGCDPTPELYTAL 179

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y ++   +E  S    M     C PD+FT +++I A  +    E +E  Y E     
Sbjct: 180 LAAYCRSNMIDEALSILDEMKNHPLCQPDVFTYSTLIKACVDIFKFELIELLYEEMAQRS 239

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           +  +  T NI+   YG+AGM+D+M  V+  M Q     P V T N +I  FG  G I+ M
Sbjct: 240 IMPNTVTQNIVLNGYGKAGMFDQMEKVLSGMLQSADCKPDVWTMNTIIGVFGNMGQIDMM 299

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           E++++K ++ G++P + T+  L+ +Y K  +  K+ S++  +        T  +N +I A
Sbjct: 300 EKWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEA 359

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + +AGD + M   F  M+      D  TF  +I+ +   G+
Sbjct: 360 FAEAGDAKNMEYTFNQMRSEGMRADTKTFCCLIKGFANAGL 400


>gi|297833394|ref|XP_002884579.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
 gi|297330419|gb|EFH60838.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
          Length = 486

 Score =  297 bits (760), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 143/349 (40%), Positives = 222/349 (63%), Gaps = 7/349 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LGK  QP +A  LF+ ML +GL+P+V++YTAL++AY +S L+D+AFS ++ MK +  
Sbjct: 131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDTMKGLPQ 190

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYS L+K+C    +FDL++ +  EM    I  + VT N ++ GYG+  +F++ME
Sbjct: 191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M+ S  C PD++T+N ++S +GN G I+ ME WY +F   G++ + +T NIL  S
Sbjct: 251 KVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGS 310

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM SVM++M+K  F  T  TYN +IE F   G  + ME  F +M+  GMK +
Sbjct: 311 YGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKAD 370

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ Y+ AGL  KV S ++     ++  +T F+N +I+A  +A D+ +M  ++ 
Sbjct: 371 TKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVIAACAKADDLIEMERVYT 430

Query: 301 TMKERHCVPDNITFATMIQAYNALGMT-------EAAQNLENKMIAMKE 342
            MKER CV D+ TF  M++AY   GM        +  Q L ++ +A KE
Sbjct: 431 RMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRAVATKE 479


>gi|108707772|gb|ABF95567.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
          Length = 443

 Score =  297 bits (760), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 135/328 (41%), Positives = 215/328 (65%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++LG+  QP +A  LF+ ML  G +P+ ++YTAL++AY ++GLLD+AF  + DMK+   
Sbjct: 96  LLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPV 155

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYS +IK+C    RFD+++ +  +M+   I  + VT N ++ GYG+A + ++ME
Sbjct: 156 CQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDME 215

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              SAM++S    PD++T+N ++S +GN G IE MEKWY +F   G++ + +TLNIL  +
Sbjct: 216 KVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGA 275

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM +VM++M+K  F  T  T+N VIE F  AG  + ME  F +M+  GMKP+
Sbjct: 276 YGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPD 335

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ +  AGL  KV  +++  E   V +DT F N ++    +A D+ +M  +F+
Sbjct: 336 TKTFCCLINGFGNAGLFHKVVGMVKLAERLGVPMDTTFHNAVLMTCVKAEDLMEMERVFM 395

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTE 328
            MK+  C+PD  T++ ++ AY   GMT+
Sbjct: 396 RMKQIQCIPDATTYSILVGAYRKEGMTD 423



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 39/256 (15%)

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  EM   G + +   Y  +I  Y +    ++     + M  S  C PD++T +++I A 
Sbjct: 111 LFDEMLQQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKAC 170

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPT 205
            ++   + ++  Y +     +  +  T NI+   YGRAG  D M  V+  M       P 
Sbjct: 171 VDASRFDIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPD 230

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V T NI++  FG  G IE ME++++K +  G++P + T                      
Sbjct: 231 VWTMNIILSLFGNRGQIESMEKWYEKFRGYGIEPETRT---------------------- 268

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
                         N +I AYG+    +KM  +   M++        TF  +I+A+   G
Sbjct: 269 -------------LNILIGAYGKKRMYDKMSAVMEYMRKLAFPWTTATFNNVIEAFADAG 315

Query: 326 MTEAAQNLENKMIAMK 341
               A+N+E+    M+
Sbjct: 316 ---DAKNMEHTFNQMR 328



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 4/151 (2%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++ F+ P   T+  ++   G++G   +    F +M  +G +P    Y +L++AY + GL+
Sbjct: 81  EQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTALIAAYCRNGLL 140

Query: 258 MKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                +L  ++ S V   D   ++ II A   A   + +  ++  M +R   P+ +T   
Sbjct: 141 DDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKDMADRSIAPNTVTQNI 200

Query: 317 MIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
           ++  Y   G  +   ++E  + AM +++  K
Sbjct: 201 VLSGYGRAGRLD---DMEKVLSAMLDSTTSK 228


>gi|326495232|dbj|BAJ85712.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 137/328 (41%), Positives = 212/328 (64%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++LG+  QP  A  LF  M   G +P+ ++YTAL+ AY ++GLLDEA   + DMK+   
Sbjct: 180 LLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGAYCRNGLLDEALKLLQDMKANPL 239

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYSILIK+     RFDL++ +  EM+   +  + VT N ++ GY +A + ++ME
Sbjct: 240 CQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRLDDME 299

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              SAM+ES    PD++T+N ++S +GNSG +E MEKWY +F   G++ + +T NIL  +
Sbjct: 300 KLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNILIGA 359

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM +VM++M++  F  T  TYN VIE F +AG  + ME+ F +M+  GMKP+
Sbjct: 360 YGKKRMYDKMSAVMEYMRRLAFPWTTATYNNVIEAFAEAGDAKNMEDTFNQMRSEGMKPD 419

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ +S A L  KV  +++  E  DV  +T F N +++A  +A D+ +M  +F 
Sbjct: 420 TKTFCCLINGFSNAALFHKVVGMVKLAERLDVPPNTSFHNSVLAACAKAEDLMEMERVFR 479

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTE 328
            MK   C PD IT++ +++AY   GMT+
Sbjct: 480 HMKHMQCEPDAITYSILLEAYRKEGMTD 507



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 115/280 (41%), Gaps = 39/280 (13%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P   TY  L+    +  +  L + +  EM   G + +   Y  +I  Y +    +E    
Sbjct: 171 PKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGAYCRNGLLDEALKL 230

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M  +  C PD++T + +I A+ ++   + ++  Y E     V  +  T NI+   Y 
Sbjct: 231 LQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYC 290

Query: 183 RAGMYDKMRSVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           RAG  D M  ++  M +     P V T NI++  FG +G +E ME++++K +  G++P +
Sbjct: 291 RAGRLDDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEPET 350

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T                                   FN +I AYG+    +KM  +   
Sbjct: 351 RT-----------------------------------FNILIGAYGKKRMYDKMSAVMEY 375

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           M+         T+  +I+A+   G    A+N+E+    M+
Sbjct: 376 MRRLAFPWTTATYNNVIEAFAEAG---DAKNMEDTFNQMR 412



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++ F++P   TY  ++   G++G     ++ F +M+ +G +P    Y +L+ AY + GL+
Sbjct: 165 EQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGAYCRNGLL 224

Query: 258 MKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
            +   +L+ ++ N     D   ++ +I A+  A   + +  ++  M ER   P+ +T   
Sbjct: 225 DEALKLLQDMKANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNI 284

Query: 317 MIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
           ++  Y   G  +   ++E  + AM E++  K
Sbjct: 285 VLSGYCRAGRLD---DMEKLLSAMLESANSK 312


>gi|224099036|ref|XP_002311357.1| predicted protein [Populus trichocarpa]
 gi|222851177|gb|EEE88724.1| predicted protein [Populus trichocarpa]
          Length = 369

 Score =  290 bits (741), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 137/342 (40%), Positives = 220/342 (64%), Gaps = 3/342 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LG+C QP++A  +F+ M+ +G++P+ + YTAL++AY ++ L++E FS IN MK+V  
Sbjct: 22  LVLLGRCGQPQRAHQIFDEMIEEGIEPTSEFYTALLAAYCRNNLIEEGFSIINQMKTVPR 81

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDVYTYS L+K+C    RF+LI+ +  EM    I  + VT N ++ G+GK   +++ME
Sbjct: 82  CQPDVYTYSTLLKACVDASRFELIDILYQEMDERLISPNTVTQNIVLSGFGKVGMYDQME 141

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M+ES  C PD++T+N ++S +GN G+++ ME+WY +F   G++ + +T NIL  +
Sbjct: 142 RVLSGMLESKTCKPDVWTMNIILSVFGNKGHVDLMERWYEKFRNFGIEPETRTFNILIGA 201

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYD M SVM++M+K  F  T  TYN VIE F   G  + ME  F +M+   MK +
Sbjct: 202 YGKKRMYDNMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFDQMRAEDMKAD 261

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ Y+ AGL  KV S ++     ++  +T  +  +ISA  +A D+ +M  +F 
Sbjct: 262 TKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTSLYKAVISACAKADDLVEMERVFK 321

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLE---NKMIA 339
            MK++ C+PD+ T++ M++AY   GM +    LE    KMIA
Sbjct: 322 QMKDKQCLPDSRTYSIMVEAYRKEGMNDKIYYLEQEKQKMIA 363



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 1/145 (0%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++ F+ P   TY  ++   G+ G  ++  + F +M   G++P S  Y +L++AY +  LI
Sbjct: 7   EQPFYQPKEATYMKLLVLLGRCGQPQRAHQIFDEMIEEGIEPTSEFYTALLAAYCRNNLI 66

Query: 258 MKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
            +  SI+ Q++       D   ++ ++ A   A   E +  L+  M ER   P+ +T   
Sbjct: 67  EEGFSIINQMKTVPRCQPDVYTYSTLLKACVDASRFELIDILYQEMDERLISPNTVTQNI 126

Query: 317 MIQAYNALGMTEAAQNLENKMIAMK 341
           ++  +  +GM +  + + + M+  K
Sbjct: 127 VLSGFGKVGMYDQMERVLSGMLESK 151


>gi|297792071|ref|XP_002863920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309755|gb|EFH40179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 498

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 145/333 (43%), Positives = 214/333 (64%), Gaps = 13/333 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +VMLGKCKQPE+A  LF+ M+++G   + +VYTAL+SAY +SG  D AF+ +  MKS  +
Sbjct: 160 IVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALLSAYSRSGRFDAAFTLLERMKSSHN 219

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYSILIKS  +   FD +  +L++M  LGI  + +T             F EME
Sbjct: 220 CQPDVHTYSILIKSFLQVFAFDKVHDLLSDMRRLGIRPNTIT-------------FVEME 266

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+   M+    C PD +T+NS + A+G +G IE ME  Y +F   G++ +I+T NIL  S
Sbjct: 267 STLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDS 326

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG++G Y KM +VM++MQK  +  T+VTYN+VI+ FG+AG +++ME  F+ M+   + P+
Sbjct: 327 YGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIIPS 386

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSLV AY +AG   K+  +LR +ENSD+ LD  FFNC++ AYG+     +M  +  
Sbjct: 387 CVTLCSLVRAYGRAGKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLE 446

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            M+++   PD IT+ TM++AY   GMT   + L
Sbjct: 447 LMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 479



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 184 AGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           A  ++    V + ++++ ++ P V  Y  +I   GK    EK  E F++M + G   N  
Sbjct: 130 ALRWESALQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHE 189

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            Y +L+SAYS++G      ++L ++++S +   D   ++ +I ++ Q    +K+ +L   
Sbjct: 190 VYTALLSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVHDLLSD 249

Query: 302 MKERHCVPDNITFATM 317
           M+     P+ ITF  M
Sbjct: 250 MRRLGIRPNTITFVEM 265


>gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana]
          Length = 495

 Score =  286 bits (733), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 144/333 (43%), Positives = 213/333 (63%), Gaps = 13/333 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +VMLGKCKQPE+A  LF+ M+++G   + +VYTALVSAY +SG  D AF+ +  MKS  +
Sbjct: 157 IVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHN 216

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYSILIKS  +   FD ++ +L++M   GI  + +T             F EME
Sbjct: 217 CQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTIT-------------FVEME 263

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+   M+    C PD +T+NS + A+G +G IE ME  Y +F   G++ +I+T NIL  S
Sbjct: 264 STLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDS 323

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG++G Y KM +VM++MQK  +  T+VTYN+VI+ FG+AG +++ME  F+ M+   + P+
Sbjct: 324 YGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPS 383

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T CSLV AY +A    K+  +LR +ENSD+ LD  FFNC++ AYG+     +M  +  
Sbjct: 384 CVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLE 443

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            M+++   PD IT+ TM++AY   GMT   + L
Sbjct: 444 LMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 476



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 67/127 (52%), Gaps = 2/127 (1%)

Query: 193 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           V + ++++ ++ P V  Y  +I   GK    EK  E F++M + G   N   Y +LVSAY
Sbjct: 136 VFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAY 195

Query: 252 SKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           S++G      ++L ++++S +   D   ++ +I ++ Q    +K+ +L   M+ +   P+
Sbjct: 196 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPN 255

Query: 311 NITFATM 317
            ITF  M
Sbjct: 256 TITFVEM 262


>gi|297736801|emb|CBI26002.3| unnamed protein product [Vitis vinifera]
          Length = 469

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 138/340 (40%), Positives = 206/340 (60%), Gaps = 29/340 (8%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LGK  QP +A  LF+ M+ +G +P+ ++YTAL+++Y +S L+DEAFS +N MK++  
Sbjct: 151 LVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILNQMKTLPR 210

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PDV+TYS L+K+C    RF+L+E +  EM    I  + VT N ++ GYGKA KF+EME
Sbjct: 211 CQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEME 270

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M+ES    PD++T+N+++S +GN G IE MEKWY +F   G++ + +T NIL  +
Sbjct: 271 KVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGA 330

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  MYDKM SVM++M+K  F  T  TYN VIE F   G  + ME  F +M+  GMK +
Sbjct: 331 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKAD 390

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L+  Y+ AGL  K                             A D+ +M  +F 
Sbjct: 391 TKTFCCLIRGYANAGLFHK-----------------------------AEDLIEMERVFN 421

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            MK++HC PD+ T++ M++AY   GM +   +LE +   M
Sbjct: 422 RMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRM 461


>gi|168016406|ref|XP_001760740.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688100|gb|EDQ74479.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 466

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 145/343 (42%), Positives = 212/343 (61%), Gaps = 4/343 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + ML + KQP+ AS LF+ +L D L+P+++++TAL++ + +S LL +AF     M+    
Sbjct: 127 LTMLARVKQPQAASNLFDFLLQDKLRPTLEIFTALITVFTKSNLLKKAFEVFEQMRLFDG 186

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C PD Y Y+ +IK C     +D  +K+  EM   G+E + VTYNT+I GYGKA  F E+E
Sbjct: 187 CLPDKYAYTTMIKGCCDAGLYDQAKKLFNEMMREGVEPTIVTYNTLIFGYGKAGLFAEIE 246

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M E+ G  PD  T N++I  +G    I +ME+ Y      G+ AD  TLN L  +
Sbjct: 247 YLLSLM-EANGITPDTITWNTLIRVFGLHNRIPEMEQAYEGLLAQGLMADEVTLNSLIGT 305

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           YGRAG+Y KM  V DFM +R+ +P T VTYNI+IE +GKA  IE+M+  FK+MK +G+KP
Sbjct: 306 YGRAGLYGKMECVTDFM-RRYSYPMTTVTYNIIIEIYGKARKIEQMDTAFKRMKAQGLKP 364

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N IT+ S++SAY K G   K++ I+RQV + +   DT  +N  I A+ +A D E M +LF
Sbjct: 365 NCITFSSILSAYGKHGEWHKIEKIMRQVRHYNAA-DTAVYNAAIDAHRRALDFEAMEKLF 423

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
             MK     PD IT+ T+I+AY  +   + A+ L+ +  A+K+
Sbjct: 424 EEMKMEGVAPDGITYTTLIEAYGRVRKLQKARELQEEWDALKK 466



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 85/209 (40%), Gaps = 44/209 (21%)

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
           ++++WY         A++ T   L     R        ++ DF+ +    PT+  +  +I
Sbjct: 111 RIQEWYT--------AEVSTYVKLLTMLARVKQPQAASNLFDFLLQDKLRPTLEIFTALI 162

Query: 214 ETFGKAGHIEKMEEYFKKMK------------------------------------HRGM 237
             F K+  ++K  E F++M+                                      G+
Sbjct: 163 TVFTKSNLLKKAFEVFEQMRLFDGCLPDKYAYTTMIKGCCDAGLYDQAKKLFNEMMREGV 222

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +P  +TY +L+  Y KAGL  +++ +L  +E + +  DT  +N +I  +G    + +M +
Sbjct: 223 EPTIVTYNTLIFGYGKAGLFAEIEYLLSLMEANGITPDTITWNTLIRVFGLHNRIPEMEQ 282

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGM 326
            +  +  +  + D +T  ++I  Y   G+
Sbjct: 283 AYEGLLAQGLMADEVTLNSLIGTYGRAGL 311


>gi|302816774|ref|XP_002990065.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
 gi|300142185|gb|EFJ08888.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
          Length = 458

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/330 (37%), Positives = 202/330 (61%), Gaps = 2/330 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLGKCK+P++A+ LF+ ML+DG  PS + +TAL+SAY +S L+  A   +  M +   C 
Sbjct: 66  MLGKCKRPDEAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATPHCS 125

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+TYS+LIKSC    +      +LA+M+  GI+ + VTYN I+D Y K+   +++   
Sbjct: 126 PDVFTYSLLIKSCCDCGQLSRASDLLADMTARGIQPNRVTYNIILDAYAKSGSLDKLHDL 185

Query: 123 FSAMVESGG--CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              M++S    C PD ++ N+++  +GN G+I +ME+W+          D  TL+ L  +
Sbjct: 186 ALQMLQSPSPSCRPDHWSRNAIVKGFGNRGDIRRMEEWFQRLTTPSDGPDSLTLHSLMAA 245

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y +A M+DKM +V+ ++ +  +    VTYNI+I  +G+AG   +M + F  MK  G++P+
Sbjct: 246 YAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGGVRPD 305

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           S+TYC+L++ Y K G+  K+  +L Q+    V  DT  +N ++ AY +A D+  +   F 
Sbjct: 306 SVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSIDRYFA 365

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAA 330
            M+E+ C PD++T+  +IQAY + G+T+ A
Sbjct: 366 AMQEQGCKPDHLTYNILIQAYRSQGLTDKA 395



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 141/300 (47%), Gaps = 3/300 (1%)

Query: 41  QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 100
           Q G  + A      ++S    +P   TY  L++   K  R D    +   M   G   S 
Sbjct: 33  QRGQWEAALKVFELLRSQQWYQPYAGTYIRLLEMLGKCKRPDEAASLFQTMLADGCGPSR 92

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
             +  ++  Y ++           AM  +  C PD+FT + +I +  + G + +      
Sbjct: 93  EAFTALMSAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRASDLLA 152

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV-MDFMQ--KRFFFPTVVTYNIVIETFG 217
           +    G++ +  T NI+  +Y ++G  DK+  + +  +Q       P   + N +++ FG
Sbjct: 153 DMTARGIQPNRVTYNIILDAYAKSGSLDKLHDLALQMLQSPSPSCRPDHWSRNAIVKGFG 212

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
             G I +MEE+F+++      P+S+T  SL++AY+KA +  K+ +++R +      +D  
Sbjct: 213 NRGDIRRMEEWFQRLTTPSDGPDSLTLHSLMAAYAKAEMFDKMHAVVRYIHRYHYQVDAV 272

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +N +I+AYG+AG   +M + F +MK     PD++T+ T+I  Y   GM      L  +M
Sbjct: 273 TYNILINAYGRAGRKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQM 332


>gi|302810470|ref|XP_002986926.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
 gi|300145331|gb|EFJ12008.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
          Length = 458

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/330 (37%), Positives = 201/330 (60%), Gaps = 2/330 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLGKCK+P++A+ LF+ ML+DG  PS + +TAL+SAY +S L+  A   +  M +   C 
Sbjct: 66  MLGKCKRPDEAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATPHCS 125

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+TYS+LIKSC    +      +LA+M+  GI+ + VTYN I+D Y K    +++   
Sbjct: 126 PDVFTYSLLIKSCCDCGQLSRAADLLADMTARGIQPNRVTYNIILDAYAKCGSLDKLHDL 185

Query: 123 FSAMVESGG--CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              M++S    C PD ++ N+++  +GN G+I +ME+W+          D  TL+ L  +
Sbjct: 186 ALQMLQSPSPSCRPDHWSRNAIVKGFGNRGDIRRMEEWFQRLTTPSDGPDSLTLHSLMAA 245

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y +A M+DKM +V+ ++ +  +    VTYNI+I  +G+AG   +M + F  MK  G++P+
Sbjct: 246 YAKAEMFDKMHAVVRYIHRYHYQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGGVRPD 305

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           S+TYC+L++ Y K G+  K+  +L Q+    V  DT  +N ++ AY +A D+  +   F 
Sbjct: 306 SVTYCTLINFYGKFGMQRKLPRLLEQMSMHKVQPDTALYNSVLDAYRRASDISSIDRYFA 365

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAA 330
            M+E+ C PD++T+  +IQAY + G+T+ A
Sbjct: 366 AMQEQGCKPDHLTYNILIQAYRSQGLTDKA 395



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 140/300 (46%), Gaps = 3/300 (1%)

Query: 41  QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 100
           Q G  + A      ++S    +P   TY  +++   K  R D    +   M   G   S 
Sbjct: 33  QRGQWEAALKVFELLRSQQWYQPYAGTYIRMLEMLGKCKRPDEAASLFQTMLADGCGPSR 92

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
             +  ++  Y ++           AM  +  C PD+FT + +I +  + G + +      
Sbjct: 93  EAFTALMSAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRAADLLA 152

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV-MDFMQ--KRFFFPTVVTYNIVIETFG 217
           +    G++ +  T NI+  +Y + G  DK+  + +  +Q       P   + N +++ FG
Sbjct: 153 DMTARGIQPNRVTYNIILDAYAKCGSLDKLHDLALQMLQSPSPSCRPDHWSRNAIVKGFG 212

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
             G I +MEE+F+++      P+S+T  SL++AY+KA +  K+ +++R +      +D  
Sbjct: 213 NRGDIRRMEEWFQRLTTPSDGPDSLTLHSLMAAYAKAEMFDKMHAVVRYIHRYHYQVDAV 272

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +N +I+AYG+AG   +M + F +MK     PD++T+ T+I  Y   GM      L  +M
Sbjct: 273 TYNILINAYGRAGRKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFGMQRKLPRLLEQM 332


>gi|356532886|ref|XP_003535000.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
           chloroplastic-like [Glycine max]
          Length = 485

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 136/346 (39%), Positives = 209/346 (60%), Gaps = 1/346 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+LGK  QP +A  LF  +  DG   S ++YTAL++A+ Q+ L+DEA S +++M ++  
Sbjct: 135 IVLLGKSSQPLRAHELFNSIHEDGCG-STELYTALIAAFCQNNLVDEALSILDEMMNLPS 193

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PD++TYS LIK+     +F+++E +  +M+   I  +  T N I+ GYGKA +F++ME
Sbjct: 194 CQPDIFTYSTLIKALVDSLKFEMVELLFDKMAKRSIVPNTYTQNLILSGYGKAGRFDQME 253

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S+M+E   C PD++T+N++IS +G+ G I+ MEKWY++F   G++    T NIL  +
Sbjct: 254 KIVSSMMEGTTCKPDVWTMNTVISVFGDKGQIDIMEKWYDKFCSFGIQPQRSTFNILIAA 313

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG   MYDKM SVM  M++     T  TYN VIE F   G  E ME  F +M   G+K +
Sbjct: 314 YGSKRMYDKMSSVMQCMRRVKCPWTTSTYNNVIEAFAAVGDAENMERAFDQMYAEGLKAD 373

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T+C L++ Y+ AG+  KV S +   E   + ++T F+N IISA  +   + +M   F 
Sbjct: 374 TKTFCFLINGYANAGIFHKVISSVSLAEKLQIRVNTSFYNAIISACAKDDALTEMERFFK 433

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346
            MKE+ C PDN T++ MI+AY   GM +    LE +   M  +  K
Sbjct: 434 HMKEKECHPDNTTYSVMIEAYRKEGMNDKIHYLEQEKRMMMSDDKK 479


>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 385

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/337 (37%), Positives = 202/337 (59%), Gaps = 4/337 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + ML K KQ  +AS +F+ +L D L+P+  ++TAL++ + QS    +A      M+    
Sbjct: 41  LTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLTVFTQSNQFKKALEIFESMRLYEG 100

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C PD YTY+ +IK C +   +    KI  EM   G++ S VTYN +I GYGKA  F E+E
Sbjct: 101 CVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGVKPSIVTYNILIHGYGKAGLFREVE 160

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              S M E+    PD  T N++I  +G +  I +ME+ Y      G++ D+ TLN L  +
Sbjct: 161 RVLSTM-EANNVAPDTVTWNTLIRVFGLNCKIPEMEQAYEGLLRQGLQPDMVTLNSLISA 219

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           YG AG+++KM SV  +MQ R+ +P T +TYNI++E +G+AG +++MEE +K+MK   +KP
Sbjct: 220 YGTAGLFEKMESVTQYMQ-RYNYPMTRITYNIIMEAYGRAGMVDQMEETWKRMKAEFVKP 278

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           NS T+CS++SAY + G    V+ ++RQ    D   DT  +N  I A+ +A + E M ++F
Sbjct: 279 NSSTFCSMLSAYGRHGYWHNVEKVMRQARYFDAA-DTAVYNAAIDAFQRAQNFEDMEKIF 337

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             MK +   PD++T++ +I AY  +   + A++L+ +
Sbjct: 338 EEMKLKGHAPDDVTYSILIGAYERIRRVDKARDLQEE 374



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 119/260 (45%), Gaps = 37/260 (14%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           TY  ++    KAK+  E  + F  ++E     P      ++++ +  S   +K  + +  
Sbjct: 36  TYLKLLTMLAKAKQAAEASNVFDCLLEDK-LRPTTAIFTALLTVFTQSNQFKKALEIFES 94

Query: 162 FNLM-GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
             L  G   D  T   + K    AG+Y + R + D M      P++VTYNI+I  +GKAG
Sbjct: 95  MRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGVKPSIVTYNILIHGYGKAG 154

Query: 221 -----------------------------------HIEKMEEYFKKMKHRGMKPNSITYC 245
                                               I +ME+ ++ +  +G++P+ +T  
Sbjct: 155 LFREVERVLSTMEANNVAPDTVTWNTLIRVFGLNCKIPEMEQAYEGLLRQGLQPDMVTLN 214

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           SL+SAY  AGL  K++S+ + ++  +  +    +N I+ AYG+AG V++M E +  MK  
Sbjct: 215 SLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNIIMEAYGRAGMVDQMEETWKRMKAE 274

Query: 306 HCVPDNITFATMIQAYNALG 325
              P++ TF +M+ AY   G
Sbjct: 275 FVKPNSSTFCSMLSAYGRHG 294



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 3/132 (2%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y  ++ AYG++G++D+   T   MK+    KP+  T+  ++ +  +   +  +EK++ + 
Sbjct: 248 YNIIMEAYGRAGMVDQMEETWKRMKA-EFVKPNSSTFCSMLSAYGRHGYWHNVEKVMRQA 306

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
            Y     +AV YN  ID + +A+ FE+ME  F  M +  G  PD  T + +I AY     
Sbjct: 307 RYFDAADTAV-YNAAIDAFQRAQNFEDMEKIFEEM-KLKGHAPDDVTYSILIGAYERIRR 364

Query: 152 IEKMEKWYNEFN 163
           ++K      E+N
Sbjct: 365 VDKARDLQEEWN 376



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 9/169 (5%)

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
           + ++WY         AD+ T   L     +A    +  +V D + +    PT   +  ++
Sbjct: 25  RAQEWYT--------ADLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALL 76

Query: 214 ETFGKAGHIEKMEEYFKKMK-HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
             F ++   +K  E F+ M+ + G  P+  TY +++    +AGL ++   I  ++    V
Sbjct: 77  TVFTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGV 136

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
                 +N +I  YG+AG   ++  +  TM+  +  PD +T+ T+I+ +
Sbjct: 137 KPSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVF 185


>gi|242057231|ref|XP_002457761.1| hypothetical protein SORBIDRAFT_03g013016 [Sorghum bicolor]
 gi|241929736|gb|EES02881.1| hypothetical protein SORBIDRAFT_03g013016 [Sorghum bicolor]
          Length = 267

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 144/197 (73%), Gaps = 10/197 (5%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++MLGKC+QP  A+ LF+ MLS+ L+P+ DVYTALV AYG SG LDEA + +  MK  +D
Sbjct: 81  LMMLGKCRQPGPAAALFKAMLSERLRPTADVYTALVGAYGYSGFLDEALAAVEQMKGAAD 140

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPD YT+S          RFDLI  +L EMSYLGIEC++V +N IIDGYGKA  FEEME
Sbjct: 141 CKPDGYTFSS--------RRFDLIPAVLDEMSYLGIECNSVIHNAIIDGYGKAAMFEEME 192

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            + SAM+ESG   PDI+T+NS+I AYGN G  ++MEK Y+EF LMGV+ D +T NI  KS
Sbjct: 193 GALSAMLESGSNVPDIYTMNSVIGAYGNHGRTDEMEKSYSEFQLMGVEPDTKTFNI--KS 250

Query: 181 YGRAGMYDKMRSVMDFM 197
           YG+AGMYDKM S+   +
Sbjct: 251 YGKAGMYDKMMSIFSLV 267



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 100/229 (43%), Gaps = 14/229 (6%)

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           + +C      ++ E +  +  Y   E  + TY  ++   GK ++     + F AM+ S  
Sbjct: 49  VAACRWESALEIFELLRKQHWY---EPRSQTYARLLMMLGKCRQPGPAAALFKAML-SER 104

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P      +++ AYG SG +++          M   AD +  +  T S  R   +D + 
Sbjct: 105 LRPTADVYTALVGAYGYSGFLDEA---LAAVEQMKGAADCKP-DGYTFSSRR---FDLIP 157

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-PNSITYCSLVSA 250
           +V+D M         V +N +I+ +GKA   E+ME     M   G   P+  T  S++ A
Sbjct: 158 AVLDEMSYLGIECNSVIHNAIIDGYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGA 217

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           Y   G   +++    + +   V  DT  FN  I +YG+AG  +KM  +F
Sbjct: 218 YGNHGRTDEMEKSYSEFQLMGVEPDTKTFN--IKSYGKAGMYDKMMSIF 264



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 30/172 (17%)

Query: 187 YDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           ++    + + ++K+ ++ P   TY  ++   GK          FK M    ++P +  Y 
Sbjct: 54  WESALEIFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAALFKAMLSERLRPTADVYT 113

Query: 246 SLVSAYSKAGLIMKVDSILRQVENS------------------DVILD----------TP 277
           +LV AY  +G + +  + + Q++ +                    +LD          + 
Sbjct: 114 ALVGAYGYSGFLDEALAAVEQMKGAADCKPDGYTFSSRRFDLIPAVLDEMSYLGIECNSV 173

Query: 278 FFNCIISAYGQAGDVEKM-GELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
             N II  YG+A   E+M G L   ++    VPD  T  ++I AY   G T+
Sbjct: 174 IHNAIIDGYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGAYGNHGRTD 225



 Score = 39.7 bits (91), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ-VENSDVILDTPFFNCIISAYG 287
             +M + G++ NS+ + +++  Y KA +  +++  L   +E+   + D    N +I AYG
Sbjct: 160 LDEMSYLGIECNSVIHNAIIDGYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGAYG 219

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
             G  ++M + +   +     PD  TF   I++Y   GM
Sbjct: 220 NHGRTDEMEKSYSEFQLMGVEPDTKTFN--IKSYGKAGM 256


>gi|388521199|gb|AFK48661.1| unknown [Lotus japonicus]
          Length = 266

 Score =  210 bits (535), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 103/250 (41%), Positives = 156/250 (62%)

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M+   I  + VT N ++ GYGKA KF++ME   S+M+ES  C PD++T+N+ IS +GN G
Sbjct: 1   MAARSIMPNTVTQNIVLSGYGKAGKFDQMEKVLSSMLESTSCKPDVWTMNTTISVFGNMG 60

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            I+ MEKWY +F   G++ + +T NIL  +YG+  MYDKM +VM++M+K  F  T  TYN
Sbjct: 61  QIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSTVMEYMRKLQFPWTTSTYN 120

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            VIE F   G  + ME  F +M+  GMK +S T+C L++ ++ AGL  KV S ++  E  
Sbjct: 121 NVIEAFTDVGDAKTMEYAFDQMRAEGMKADSKTFCCLINGFANAGLFHKVISTVQLAEKF 180

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           ++ ++T F+N ++SA  +A D+ +M  +F  MK+  C PD+ T+  MI+AY   GM +  
Sbjct: 181 EIAVNTTFYNAVLSACTKAEDLMEMERVFKRMKDNQCPPDDTTYTIMIEAYRKEGMNDKI 240

Query: 331 QNLENKMIAM 340
             LE +   M
Sbjct: 241 YYLEQEKKTM 250



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 118/242 (48%), Gaps = 3/242 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M +  + P+      ++S YG++G  D+    ++ M   + CKPDV+T +  I       
Sbjct: 1   MAARSIMPNTVTQNIVLSGYGKAGKFDQMEKVLSSMLESTSCKPDVWTMNTTISVFGNMG 60

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFT 138
           + D++EK   +    GIE    T+N +I  YGK + +++M +    M +     P    T
Sbjct: 61  QIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSTVMEYMRKLQ--FPWTTST 118

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
            N++I A+ + G+ + ME  +++    G+KAD +T   L   +  AG++ K+ S +   +
Sbjct: 119 YNNVIEAFTDVGDAKTMEYAFDQMRAEGMKADSKTFCCLINGFANAGLFHKVISTVQLAE 178

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           K         YN V+    KA  + +ME  FK+MK     P+  TY  ++ AY K G+  
Sbjct: 179 KFEIAVNTTFYNAVLSACTKAEDLMEMERVFKRMKDNQCPPDDTTYTIMIEAYRKEGMND 238

Query: 259 KV 260
           K+
Sbjct: 239 KI 240


>gi|357457969|ref|XP_003599265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488313|gb|AES69516.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 185

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/192 (52%), Positives = 125/192 (65%), Gaps = 38/192 (19%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML +GLKP+VDV+ AL SAY              DMKSV+D K DVY YS+LI  C KF 
Sbjct: 1   MLFEGLKPTVDVFIALASAY--------------DMKSVADRKSDVYKYSVLISCCAKFR 46

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           RFDLIE++LA+MSYLGIEC+ VTYN+IIDGYGKA  FE+ME+S + M+E+  C PD+FTL
Sbjct: 47  RFDLIERVLADMSYLGIECNNVTYNSIIDGYGKADMFEKMENSLTDMIENENCQPDVFTL 106

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           NS+I +YGN                 G K D   +N         GMYDK+++V DFM++
Sbjct: 107 NSLIGSYGN-----------------GRKIDNDMINF-------TGMYDKIKTVTDFMER 142

Query: 200 RFFFPTVVTYNI 211
           RFF PT+VTY I
Sbjct: 143 RFFAPTIVTYEI 154



 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A  YD M+SV D          V  Y+++I    K    + +E     M + G++ N++T
Sbjct: 17  ASAYD-MKSVADRKSD------VYKYSVLISCCAKFRRFDLIERVLADMSYLGIECNNVT 69

Query: 244 YCSLVSAYSKAGLIMKVD-SILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           Y S++  Y KA +  K++ S+   +EN +   D    N +I +YG    ++
Sbjct: 70  YNSIIDGYGKADMFEKMENSLTDMIENENCQPDVFTLNSLIGSYGNGRKID 120


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 173/361 (47%), Gaps = 35/361 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  Q E+A LLFE + +    P V  Y+ L+++ G++G  + A   + +M++   CKP
Sbjct: 19  LAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQA-KGCKP 77

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +++TY+ L+    K  +FD   ++LAEM   G      TYN +I   GKA +  E  + F
Sbjct: 78  NLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLF 137

Query: 124 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
           + M E G                                  GC PD+ T +S+I+  G  
Sbjct: 138 AEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKD 197

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G   K  K + E    G K D  T   L  + G+AG  D    ++D M++R   P VVTY
Sbjct: 198 GETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTY 257

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N +I  FGK G + +      +MK  G KP+ +TY  L++   KA  + +   +L+++E 
Sbjct: 258 NALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEK 317

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
                DT  +N +I+  G+AG +   G LF  MK + C PD +T++T+I A       E+
Sbjct: 318 EGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVES 377

Query: 330 A 330
           A
Sbjct: 378 A 378



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 175/350 (50%), Gaps = 7/350 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M  LGK  + + A  L + M   G+KP V  Y AL++ +G+ G L EA++ +++MK  + 
Sbjct: 226 MDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKR-NG 284

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDV TYS LI    K  + D   ++L +M   G     +TYNT+I+G GKA    +  
Sbjct: 285 CKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAG 344

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M +S GC+PD+ T +++I+A G +  +E     + E   +G++ D+ T   +   
Sbjct: 345 RLFDRM-KSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITV 403

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            G+AG  D    +   M+ +   P V+TYN  + + G+ G  ++  + F+ MK  G+ P+
Sbjct: 404 LGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPD 463

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY +L+   SK   +     +L+++       D+  F+  +      G+V++  EL  
Sbjct: 464 VATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQ 523

Query: 301 TMKERHCVPDNITFATMIQAYNALG-MTEAAQNLENKMIAMKENSGKKLI 349
               +   P   ++  +I A    G ++EA   LE+    +KE  GK  I
Sbjct: 524 FANSKGLWPGASSYNALIDALAKAGRVSEAFNTLED----LKEQGGKPDI 569



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 164/309 (53%), Gaps = 3/309 (0%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P+V  Y +L++A  ++G  +EA     ++K+ +   PDV +YS LI S  +  +++   +
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKA-AKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           ++AEM   G + +  TYNT++D  GKA +F+E     + M ++ GC PD+ T N +IS  
Sbjct: 66  VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDN-GCVPDVRTYNCLISTL 124

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           G +G + +    + E    G   D  T N L    G+ G   K   +++ M++    P V
Sbjct: 125 GKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDV 184

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           +TY+ +I   GK G   K  + F++MK RG KP+SIT+ +L+ A  KAG +     +L +
Sbjct: 185 MTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDE 244

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY-NALG 325
           ++   V      +N +I+ +G+ GD+ +   L   MK   C PD +T++ +I     A  
Sbjct: 245 MKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQ 304

Query: 326 MTEAAQNLE 334
           + EA Q L+
Sbjct: 305 LDEACQVLK 313



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 157/315 (49%), Gaps = 2/315 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + ++A  L E M   G  P V  Y++L++  G+ G   +AF    +MK     KP
Sbjct: 159 LGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGR-KP 217

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  T++ L+ +  K  R D   ++L EM   G++   VTYN +I G+GK     E  +  
Sbjct: 218 DSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLL 277

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M +  GC PD+ T + +I+    +  +++  +   +    G   D  T N L    G+
Sbjct: 278 DEM-KRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGK 336

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG+ +    + D M+ +   P VVTY+ +I   GKA  +E     F++M+  G++P+  T
Sbjct: 337 AGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFT 396

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           YCS+++   KAG +   D +  ++    +  D   +N  +++ G+ G  ++  ++F  MK
Sbjct: 397 YCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMK 456

Query: 304 ERHCVPDNITFATMI 318
           E   +PD  T+  ++
Sbjct: 457 ESGLLPDVATYDALL 471



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 160/332 (48%), Gaps = 6/332 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  +  +A  LF+ M   G KP    +TAL+ A G++G +D+A   +++MK     KP
Sbjct: 194 LGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKE-RGVKP 252

Query: 64  DVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            V TY+ LI    K    DL+E   +L EM   G +   VTY+ +I G  KA + +E   
Sbjct: 253 GVVTYNALIAGFGKVG--DLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQ 310

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               M E  GC PD  T N++I+  G +G +    + ++     G   D+ T + L  + 
Sbjct: 311 VLKKM-EKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITAL 369

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+A   +    + + M+     P + TY  +I   GKAG ++  +  F +M+ +G+ P+ 
Sbjct: 370 GKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDV 429

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           ITY + +++  + G   +   I   ++ S ++ D   ++ ++    +  +V+    L   
Sbjct: 430 ITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKE 489

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           + E+ C  D++ F   ++   + G  + A  L
Sbjct: 490 LIEQGCAFDSLKFDECLEILTSWGNVDEAHEL 521



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 120/237 (50%), Gaps = 1/237 (0%)

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           VTYN++++   KA + EE +  F  + ++    PD+ + + +I++ G +G  E   +   
Sbjct: 10  VTYNSLLNALAKAGQCEEAQLLFEEL-KAAKWTPDVVSYSCLINSLGRAGKWEAALEVVA 68

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E    G K ++ T N L    G+AG +D+   ++  M+     P V TYN +I T GKAG
Sbjct: 69  EMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAG 128

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            + +    F +M+ RG  P++ TY SL+    K G   K   +L ++E      D   ++
Sbjct: 129 RLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYS 188

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +I+  G+ G+  K  +LF  MK R   PD+ITF  ++ A    G  + A  L ++M
Sbjct: 189 SLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM 245



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 129/287 (44%), Gaps = 37/287 (12%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  Q ++A  + + M  +G  P    Y  L++  G++GLL++A    + MKS   C PDV
Sbjct: 301 KASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKS-KGCNPDV 359

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TYS LI +  K  R +    +  EM  +GI+    TY +II   GKA + ++ +  FS 
Sbjct: 360 VTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSE 419

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL------TK 179
           M    G  PD+ T N+ +++ G  G  ++  K + +    G+  D+ T + L      TK
Sbjct: 420 M-RGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTK 478

Query: 180 SYGRA-----------------------------GMYDKMRSVMDFMQKRFFFPTVVTYN 210
               A                             G  D+   ++ F   +  +P   +YN
Sbjct: 479 EVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYN 538

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
            +I+   KAG + +     + +K +G KP+ ++Y SL+SA  + G I
Sbjct: 539 ALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQI 585



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 100/204 (49%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P++ T NS+++A   +G  E+ +  + E        D+ + + L  S GRAG ++    V
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           +  MQ +   P + TYN +++  GKAG  ++      +M+  G  P+  TY  L+S   K
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           AG + +  ++  ++     + DT  +N +I   G+ G  +K  EL   M+   C PD +T
Sbjct: 127 AGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMT 186

Query: 314 FATMIQAYNALGMTEAAQNLENKM 337
           ++++I      G T  A  L  +M
Sbjct: 187 YSSLITGLGKDGETVKAFKLFQEM 210



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 35/174 (20%)

Query: 199 KRFFFPTVVTYN-----------------------------------IVIETFGKAGHIE 223
           K F  P VVTYN                                    +I + G+AG  E
Sbjct: 2   KGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWE 61

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
              E   +M+ +G KPN  TY +LV    KAG   +   +L ++ ++  + D   +NC+I
Sbjct: 62  AALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLI 121

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           S  G+AG + +   LF  M+ER CVPD  T+ ++I     +G ++ A  L  +M
Sbjct: 122 STLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEM 175



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 90/214 (42%), Gaps = 37/214 (17%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +LGK  Q + A  LF  M   GL P V  Y A +++ G+ G   EA     DMK  S 
Sbjct: 401 ITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKE-SG 459

Query: 61  CKPDVYTYSILIKSCTKFHRFD--------LIEKILAEMSYLGIEC-------------- 98
             PDV TY  L+   +K    D        LIE+  A  S    EC              
Sbjct: 460 LLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAH 519

Query: 99  -------------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
                         A +YN +ID   KA +  E  ++   + E GG  PDI + +S+ISA
Sbjct: 520 ELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGG-KPDIVSYSSLISA 578

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            G +G I+   +   E +  G+K   ++ + L +
Sbjct: 579 LGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVR 612


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 173/333 (51%), Gaps = 2/333 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+ KQ  +A   F +M      P+   +  L++AY + G L+ A   +++MK  S+C P 
Sbjct: 112 GRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAERVLHEMKE-SNCSPG 170

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY+  ++   K   + L E +  EM   G+  +  T+  +I+ YGKA    + E  F 
Sbjct: 171 LVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQ 230

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           +M     C P +FT  ++I+A+   GN  + E+ + E   +G   DI T N L ++Y R 
Sbjct: 231 SM-RKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRG 289

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G     + V + M +       V+YNI+I+ FG+AG I   +  +  MK  G KP   ++
Sbjct: 290 GHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSH 349

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L+SA+ KAG +   ++ +R++E+  V  DT  FN ++ AYG +G ++KM  L+ +M+ 
Sbjct: 350 ILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQG 409

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             C PD IT  T+I  Y   G  E A+ + N +
Sbjct: 410 SVCKPDIITLNTLINVYAQGGYIERAEEIFNSL 442



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 154/299 (51%), Gaps = 2/299 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK     +A  LF+ M      PS+  YTAL++A+ + G    A     +++SV    PD
Sbjct: 217 GKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFV-PD 275

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           +YTY+ L+++ ++       +++   M   G++   V+YN +ID +G+A    + ++ + 
Sbjct: 276 IYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYD 335

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           +M +  G  P + +   ++SA+  +G +   E +      MGV+ D    N L  +YG +
Sbjct: 336 SM-KKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNS 394

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  DKM S+ + MQ     P ++T N +I  + + G+IE+ EE F  ++ +G  P+ +++
Sbjct: 395 GRMDKMESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSW 454

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
            SL+ AYSK  L  K  S+ +++  +  I D      ++S+      V+++ ++  T +
Sbjct: 455 TSLMGAYSKRKLYRKCVSVYQKMLIAGCIPDRATAKVLLSSCRGPEQVKEVTDMIETQR 513



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 124/279 (44%), Gaps = 1/279 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           KPDV  +++L+ +  +  ++   E     M       +  ++N ++  Y +  + E  E 
Sbjct: 98  KPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQLERAER 157

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               M ES  C P + T N+ +     SG+ +  E  + E    GV   + T  ++   Y
Sbjct: 158 VLHEMKESN-CSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIY 216

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+A    K   +   M+K    P++ TY  +I    + G+  + EE F +++  G  P+ 
Sbjct: 217 GKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPDI 276

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY +L+ AYS+ G       +   +  + V  D   +N +I A+G+AG +     ++ +
Sbjct: 277 YTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDS 336

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           MK+    P   +   ++ A+   G    A+N   ++ +M
Sbjct: 337 MKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESM 375



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 65/141 (46%)

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           +Q   F P V  +N++++ +G+     + E  F  MK     P   ++  L++AYS+ G 
Sbjct: 92  LQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQ 151

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + + + +L +++ S+       +N  +    ++G  +   ++F  M+ R   P   TF  
Sbjct: 152 LERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTL 211

Query: 317 MIQAYNALGMTEAAQNLENKM 337
           MI  Y     +  A++L   M
Sbjct: 212 MINIYGKAHHSAKAEHLFQSM 232


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 174/338 (51%), Gaps = 3/338 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+  +   A  +FE M   G+ PSV  YTAL+S Y + GLL EA++    MK    C 
Sbjct: 39  ILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKE-KGCS 97

Query: 63  PDVYTYSILIKSCTK-FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P+V TY+ LI +CTK  +R   +  +  EM   G++ + +TYN +++       F+    
Sbjct: 98  PNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQ 157

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               M ++  C P++ +  +MI++ G SG +++  + + E   +G   +  T N L K+Y
Sbjct: 158 ILKEM-KAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAY 216

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R G Y+K   +   M+     P + TYN VI+  G+ G   + E  F +M+ +G  P+ 
Sbjct: 217 AREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDR 276

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +++ AYSK     +   +L+ ++ +    D   +N ++ A G+AG   +  ++F  
Sbjct: 277 VTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHE 336

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +K     P+ ++F+ +I  Y  LG  E A+    +M A
Sbjct: 337 LKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEMRA 374



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 138/275 (50%), Gaps = 2/275 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M   G++P+   Y  +V+A     L D A   + +MK+V +C P+V +Y+ +I S 
Sbjct: 123 LFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAV-NCLPNVISYTTMINSL 181

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  R D   ++  EM  LG   ++ TYN+++  Y +  ++E+    F  M E  GC PD
Sbjct: 182 GRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGM-EDEGCIPD 240

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           ++T N++I   G  G   + E  + E    G   D  T N +  +Y +     + R ++ 
Sbjct: 241 LYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLK 300

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M++    P + TYNI+++  GKAG   +  + F ++K  G  PN +++ +L++ Y + G
Sbjct: 301 TMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLG 360

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
              + +    ++  +  + +   +  ++++Y   G
Sbjct: 361 YFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHG 395



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 37/219 (16%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  + ++A  LFE M   G  P+   Y +L+ AY + G  ++A      M+    C P
Sbjct: 181 LGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMED-EGCIP 239

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+YTY+ +I  C +   F   E +  EM   G     VTYNT++D Y K  +        
Sbjct: 240 DLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLL 299

Query: 124 SAMVESGGCHPDIFTLN-----------------------------------SMISAYGN 148
             M +  GC PD++T N                                   ++I+ YG 
Sbjct: 300 KTM-KRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGR 358

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            G  E+ E+ + E    G   +      L  SY   GMY
Sbjct: 359 LGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHGMY 397



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 98/194 (50%), Gaps = 1/194 (0%)

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           ++IS  G  G +    + +   +  GV   +     L   Y + G+  +  ++ + M+++
Sbjct: 35  TIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEK 94

Query: 201 FFFPTVVTYNIVIETFGK-AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
              P V+TYN +I    K A  +  +   F++MK  G++PN ITY  +V+A     L   
Sbjct: 95  GCSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDT 154

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              IL++++  + + +   +  +I++ G++G +++  ELF  MKE    P++ T+ ++++
Sbjct: 155 ASQILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLK 214

Query: 320 AYNALGMTEAAQNL 333
           AY   G  E A  L
Sbjct: 215 AYAREGRYEKAMCL 228



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I   G+ G +    E F+ M   G+ P+   Y +L+S Y+K GL+ +  ++   ++   
Sbjct: 36  IISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKG 95

Query: 272 VILDTPFFNCIISA-YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              +   +N +I+A   +A  +  +  LF  MK+    P++IT+  M+ A   L + + A
Sbjct: 96  CSPNVLTYNTLINACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTA 155

Query: 331 QNLENKMIAM 340
             +  +M A+
Sbjct: 156 SQILKEMKAV 165



 Score = 38.5 bits (88), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N +T  S++    K GL      I   +  + V      +  ++S Y + G +++   LF
Sbjct: 32  NCVTIISILGREGKLGL---AREIFEGMSKAGVAPSVHAYTALLSGYAKQGLLKEAWALF 88

Query: 300 LTMKERHCVPDNITFATMIQA 320
             MKE+ C P+ +T+ T+I A
Sbjct: 89  EAMKEKGCSPNVLTYNTLINA 109


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 163/345 (47%), Gaps = 38/345 (11%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSIL 71
           A  +F  M+  G++P++  Y  ++  Y +  +   E    +  MK      PD YTY+ L
Sbjct: 191 AVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKE-HGVAPDRYTYNTL 249

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I  C +   +    ++  EM   G E   VT+N+++D YGKA++ +E       M E  G
Sbjct: 250 ISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEM-ERVG 308

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL----------------- 174
           C P + T NS+IS+Y   G +E+      E  + G+K D+ T                  
Sbjct: 309 CPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAI 368

Query: 175 ------------------NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
                             N L K +G  G + +M +V D ++   F P +VT+N ++  F
Sbjct: 369 VEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVF 428

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           G+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL      I +++  + +  D 
Sbjct: 429 GQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDV 488

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             +N ++SA  + G  E+  +LF  M+ER C PD  ++++++ AY
Sbjct: 489 STYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAY 533



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 164/340 (48%), Gaps = 5/340 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++ ++A  + + M   G  PSV  Y +L+S+Y + GLL++A +   +M+ V   KPD
Sbjct: 289 GKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEME-VKGIKPD 347

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ LI    +  + D       EM   G + +  TYN +I  +G   KF EM + F 
Sbjct: 348 VVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFD 407

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +  S G  PDI T N++++ +G +G   ++   + E    G   +  T   L  SY R 
Sbjct: 408 EL-RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 466

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G++D    +   M +   +P V TYN V+    + G  E+ E+ F +M+ R  KP+  +Y
Sbjct: 467 GLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSY 526

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+ AY+ A  + K+ ++   + +  +         ++    +  ++ +  + FL +++
Sbjct: 527 SSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQ 586

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           + C  D      M+  Y   G     + +E  +  MKE++
Sbjct: 587 KRCSLDINVLNAMVSIY---GKNRMVRKVEKILSLMKESA 623



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 151/308 (49%), Gaps = 2/308 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ +F+ M + G +P    + +L+  YG++   DEA   I +M+ V  C P V TY+ 
Sbjct: 260 KEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVG-CPPSVVTYNS 318

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S  K    +    +  EM   GI+   VTY T+I G  +A K +     +  MV + 
Sbjct: 319 LISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRN- 377

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC P++ T N++I  +G  G   +M   ++E    G   DI T N L   +G+ G+  ++
Sbjct: 378 GCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEV 437

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V   M+K  + P   TY  +I ++ + G  +   + +K+M   G+ P+  TY +++SA
Sbjct: 438 SGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSA 497

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            ++ G   + + +  ++E  D   D   ++ ++ AY  A  ++KM  L   +      P 
Sbjct: 498 LARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPH 557

Query: 311 NITFATMI 318
           N    T++
Sbjct: 558 NWLVKTLV 565



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 166/336 (49%), Gaps = 9/336 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + K PE  ++ F+ + S G  P +  +  L++ +GQ+GL  E      +MK      P+ 
Sbjct: 396 RGKFPEMMAV-FDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI-PER 453

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY  LI S ++   FDL  +I   M   GI     TYN ++    +  ++E+ E  F+ 
Sbjct: 454 DTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAE 513

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---IQTLNILTKSYG 182
           M E   C PD ++ +S++ AY N+  ++KM+   ++     ++     ++TL ++     
Sbjct: 514 M-EERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVN 572

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
              + +  ++ ++  QKR     +   N ++  +GK   + K+E+    MK   +  ++ 
Sbjct: 573 --NLAEAEKAFLELRQKRCSL-DINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAA 629

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+  YS+ G   K ++IL ++++S V  D   +N +I AYG+ G +++   LF  M
Sbjct: 630 TYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEM 689

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           K     PD +T+   +++Y +  M E A  L   M+
Sbjct: 690 KCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMV 725



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 133/287 (46%), Gaps = 2/287 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C   + A  +++ M+  G+ P V  Y A++SA  + G  ++A     +M+   DCKPD 
Sbjct: 465 RCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEE-RDCKPDE 523

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           Y+YS L+ +     R D ++ +  ++    IE       T++    K     E E +F  
Sbjct: 524 YSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLE 583

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           + +   C  DI  LN+M+S YG +  + K+EK  +      +     T N L   Y R G
Sbjct: 584 LRQKR-CSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLG 642

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             +K  +++  ++     P   +YN VI  +G+ G +++    F +MK  G+KP+ +TY 
Sbjct: 643 DCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYN 702

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
             V +Y    +  +   ++R +       +   +N I+  Y + G +
Sbjct: 703 IFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKL 749



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG C++ E  ++L E+  S G++P    Y  ++ AYG+ G + EA    ++MK  S  KP
Sbjct: 641 LGDCEKCE--NILTEIK-SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK-CSGLKP 696

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           DV TY+I +KS      F+   +++  M   G + +  TYN+I++GY +  K  +
Sbjct: 697 DVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTD 751



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ-AGDVEKMGE 297
           P++  Y +LVSA+S+AG      ++ R++ +S V      +N ++  Y + A   +++ E
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGM-TEAAQ 331
           L  +MKE    PD  T+ T+I       +  EAAQ
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQ 264


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 167/345 (48%), Gaps = 38/345 (11%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQ-SGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           A  +F+ M+  G++P++  Y  +  AY + S    E  + ++ MK     + D YTY+ L
Sbjct: 203 AVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKE-DGIERDRYTYNTL 261

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I  C +        ++  EM   G E   VT+N+++D YGKA+K EE       M E+ G
Sbjct: 262 ISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRM-ENAG 320

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL----------------- 174
           C P + T NS+ISAY   G +E+  +   E    G+K D+ T                  
Sbjct: 321 CTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAAL 380

Query: 175 ------------------NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
                             N L K +G  G + +M +V D ++   + P VVT+N ++  F
Sbjct: 381 ATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVF 440

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           G+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL  +   I +++  + +  D 
Sbjct: 441 GQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDI 500

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             +N ++SA  + G  E+  +LF  M +R C PD +++++++ AY
Sbjct: 501 STYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAY 545



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 161/340 (47%), Gaps = 5/340 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++ E+A  + + M + G  PSV  Y +L+SAY + GLL+EA     +M+     KPD
Sbjct: 301 GKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEME-FRGMKPD 359

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ LI    +  + D      +EM   G   +  TYN +I  +G   KF EM + F 
Sbjct: 360 VVTYTTLISGLDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFD 419

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +  S G  PD+ T N+++S +G +G   ++   + E    G   +  T   L  SY R 
Sbjct: 420 DL-RSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 478

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G++D+   +   M +   +P + TYN V+    + G  E+ E+ F +M  R  KP+ ++Y
Sbjct: 479 GLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSY 538

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+ AY+ A  + K+ ++   +    +         ++    +  ++ +  + F  ++ 
Sbjct: 539 SSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRR 598

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           R C  D      M+  Y   G  +  + +E  +  M ENS
Sbjct: 599 RRCSLDINVLNAMVSIY---GKNKMVKKVEEVLSLMMENS 635



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 169/341 (49%), Gaps = 14/341 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A+ +F+ M + G +P    + +L+  YG++   +EA   +  M++ + C P V TY+ 
Sbjct: 272 REAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMEN-AGCTPSVVTYNS 330

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI +  K    +   ++  EM + G++   VTY T+I G  +  K +   +++S MV + 
Sbjct: 331 LISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRN- 389

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC P++ T N++I  +G  G   +M   +++    G   D+ T N L   +G+ G+  ++
Sbjct: 390 GCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEV 449

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V   M+K  + P   TY  +I ++ + G  ++  E +K+M   G+ P+  TY +++SA
Sbjct: 450 SGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSA 509

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG----ELFLTMKERH 306
            ++ G   + + +  ++ + D   D   ++ ++ AY  A  ++KM     +++    ERH
Sbjct: 510 LARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERH 569

Query: 307 CVPDNITFATMI---QAYNALGMTEAA-QNLENKMIAMKEN 343
               N    T++      N L  TE A Q L  +  ++  N
Sbjct: 570 ----NWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDIN 606



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 155/356 (43%), Gaps = 38/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F+ + S G  P V  +  L+S +GQ+GL  E      +MK      P+  TY  LI S 
Sbjct: 417 VFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYI-PERDTYVSLISSY 475

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           ++   FD   +I   M   GI     TYN ++    +  ++E+ E  F+ MV+   C PD
Sbjct: 476 SRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRD-CKPD 534

Query: 136 IFTLNSMISAYGNSGNIEKM-----------------------------------EKWYN 160
             + +S++ AY N+  ++KM                                   EK + 
Sbjct: 535 ELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQ 594

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E        DI  LN +   YG+  M  K+  V+  M +     +  TYN ++  + + G
Sbjct: 595 ELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLG 654

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
             EK E    ++K  GM+P+  +Y +++ AY + G + +   +  +++ S V  D   +N
Sbjct: 655 DCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYN 714

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLEN 335
             I +Y      E+  +L   +  + C P+  TF +++Q Y+  G M EA   L N
Sbjct: 715 IFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAKSFLSN 770



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 143/297 (48%), Gaps = 7/297 (2%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           V    +  + ++G L EA + +    +     PD   Y+ L+ + ++  RF     +   
Sbjct: 155 VLPTAIRVFARAGCLAEASAILEAAPA-----PDASAYTALVSAFSRAGRFRDAVAVFQR 209

Query: 91  MSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           M   G++ + VTYN +   Y K +  ++E+ +   +M E  G   D +T N++IS     
Sbjct: 210 MVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKED-GIERDRYTYNTLISCCRRR 268

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G   +  + ++E    G + D  T N L   YG+A  +++   V+  M+     P+VVTY
Sbjct: 269 GLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTY 328

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N +I  + K G +E+  E  ++M+ RGMKP+ +TY +L+S   + G I    +   ++  
Sbjct: 329 NSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVR 388

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +    +   +N +I  +G  G   +M  +F  ++    VPD +T+ T++  +   G+
Sbjct: 389 NGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGL 445



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 116/263 (44%), Gaps = 35/263 (13%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE---------------- 47
           L +  + EQA  LF  M+    KP    Y++L+ AY  +  LD+                
Sbjct: 510 LARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANAKKLDKMKTLSEDIYAERIERH 569

Query: 48  ---------AFSTINDMKSVSD---------CKPDVYTYSILIKSCTKFHRFDLIEKILA 89
                      + +N++              C  D+   + ++    K      +E++L+
Sbjct: 570 NWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLS 629

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
            M    I  SA TYN+++  Y +    E+ ES  +  ++S G  PD ++ N++I AYG  
Sbjct: 630 LMMENSINHSAATYNSLMHMYSRLGDCEKCESILTE-IKSSGMRPDRYSYNTVIYAYGRK 688

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G +++  + ++E    GVK DI T NI  KSY    M+++   ++ ++  +   P   T+
Sbjct: 689 GQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTF 748

Query: 210 NIVIETFGKAGHIEKMEEYFKKM 232
           N +++ + + G + + + +   +
Sbjct: 749 NSILQGYSRHGRMVEAKSFLSNL 771



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 9/175 (5%)

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
           + L    + + RAG   +  ++++        P    Y  ++  F +AG        F++
Sbjct: 154 RVLPTAIRVFARAGCLAEASAILEAAPA----PDASAYTALVSAFSRAGRFRDAVAVFQR 209

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMK-VDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           M   G++P  +TY  +  AYSK  +  K V +++  ++   +  D   +N +IS   + G
Sbjct: 210 MVDGGVQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRG 269

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
              +  ++F  MK     PD +TF +++  Y      E A  +  +M    EN+G
Sbjct: 270 LHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRM----ENAG 320


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 169/338 (50%), Gaps = 4/338 (1%)

Query: 2   VMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           VM G CK+   ++A  L  +M     KP+   YT ++ A+ + G+LD A S +N+MK  S
Sbjct: 184 VMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKS 243

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD++TYS LI +  K  +++ +  +  EM +L I  +  T+N++IDG  K  K E+ 
Sbjct: 244 -IPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDA 302

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E     M+E G   PD+ T N +I  YG  G +++  + ++      ++ DI + NIL  
Sbjct: 303 EEIMRYMIEKG-VDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILIN 361

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y R    D+   V   + ++   P++VT N+++    + G  +  + +F +M   G  P
Sbjct: 362 GYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIP 421

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  T+C+L+  Y K GL+ +  S   ++E      +   +  +I    + G ++K    F
Sbjct: 422 DLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATF 481

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +      PD IT+  MI  Y   G+ + A+++  KM
Sbjct: 482 EKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKM 519



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 141/313 (45%), Gaps = 5/313 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-- 68
           + A  LF  M+     PSV  ++ L+ A      +    S ++  + +   +  V+ +  
Sbjct: 54  DDAFSLFRQMVRTKPLPSVASFSKLLKAMVH---MKHYSSVVSLFREIHKLRIPVHEFIL 110

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           SI++ SC   HR DL   +LA     GI  + VT+ T+I G     K ++    F  +V 
Sbjct: 111 SIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVR 170

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
              C P+     ++++     G+ +K             K + +T  I+  ++ + GM D
Sbjct: 171 ENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLD 230

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
              S+++ M+++   P + TY+ +I+   K    E +   F +M H  + PN  T+ S++
Sbjct: 231 GATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVI 290

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               K G +   + I+R +    V  D   +N II  YG  G V++  E+F +M  +   
Sbjct: 291 DGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIE 350

Query: 309 PDNITFATMIQAY 321
           PD I++  +I  Y
Sbjct: 351 PDIISYNILINGY 363



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 130/268 (48%), Gaps = 4/268 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK+   E A  +   M+  G+ P V  Y  ++  YG  G +D A    + M + S
Sbjct: 289 VIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKS 348

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +PD+ +Y+ILI    +  + D   ++  E+S  G++ S VT N ++ G  +  + +  
Sbjct: 349 -IEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSA 407

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           ++ F  M+ +G   PD++T  +++  Y  +G +E+    +++        +IQ    +  
Sbjct: 408 QNFFDEMLSAGHI-PDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVID 466

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G  DK  +  + +      P V+TY  +I  + + G +++ ++  +KM+  G   
Sbjct: 467 GLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLA 526

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQV 267
           ++ TY  +V  + ++  + ++ + L ++
Sbjct: 527 DNRTYNVIVRGFLRSNKVSEMKAFLEEI 554



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 148/335 (44%), Gaps = 38/335 (11%)

Query: 11  EQASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           + A  LF+ ++ + + +P+  +Y  +++   + G   +AF  +  M+  S  KP+  TY+
Sbjct: 159 KDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGST-KPNTRTYT 217

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           I+I +  K    D    +L EM    I     TY+T+ID   K  ++E + + F  M+  
Sbjct: 218 IVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHL 277

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
              +P++ T NS+I      G +E  E+                                
Sbjct: 278 N-IYPNVCTFNSVIDGLCKEGKVEDAEE-------------------------------- 304

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              +M +M ++   P V+TYN++I+ +G  G +++  E F  M ++ ++P+ I+Y  L++
Sbjct: 305 ---IMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILIN 361

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            Y++   I +   + R++    +       N ++    + G  +     F  M     +P
Sbjct: 362 GYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIP 421

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           D  T  T++  Y   G+ E A +  +K+   +E++
Sbjct: 422 DLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDT 456



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/256 (19%), Positives = 105/256 (41%), Gaps = 35/256 (13%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q ++A  +F+ M++  ++P +  Y  L++ Y +   +DEA     ++ S    KP + T 
Sbjct: 333 QVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREI-SQKGLKPSIVTC 391

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF----- 123
           ++L+    +  R    +    EM   G      T+ T++ GY K    EE  S F     
Sbjct: 392 NVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLER 451

Query: 124 --------------SAMVESG---------------GCHPDIFTLNSMISAYGNSGNIEK 154
                           + ++G               G HPD+ T  +MIS Y   G +++
Sbjct: 452 RREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDE 511

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
            +    +    G  AD +T N++ + + R+    +M++ ++ +  + F     T  ++++
Sbjct: 512 AKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571

Query: 215 TFGKAGHIEKMEEYFK 230
              +   I +   + K
Sbjct: 572 IIAEDPSITRKMHWIK 587


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 162/345 (46%), Gaps = 38/345 (11%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSIL 71
           A  +F  M+  G++P++  Y  ++  Y +  +   E    +  MK      PD YTY+ L
Sbjct: 191 AVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKE-HGVAPDRYTYNTL 249

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I  C +   +    ++  EM   G E   VT+N+++D YGKA++ +E       M E  G
Sbjct: 250 ISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEM-ERVG 308

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL----------------- 174
           C P + T NS+IS+Y   G +E+      E  + G+K D+ T                  
Sbjct: 309 CPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAI 368

Query: 175 ------------------NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
                             N L K +G  G + +M +V D  +   F P +VT+N ++  F
Sbjct: 369 VEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVF 428

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           G+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL      I +++  + +  D 
Sbjct: 429 GQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDV 488

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             +N ++SA  + G  E+  +LF  M+ER C PD  ++++++ AY
Sbjct: 489 STYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAY 533



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 163/340 (47%), Gaps = 5/340 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++ ++A  + + M   G  PSV  Y +L+S+Y + GLL++A +   +M+ V   KPD
Sbjct: 289 GKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEME-VKGMKPD 347

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ LI    +  + D       EM   G + +  TYN +I  +G   KF EM + F 
Sbjct: 348 VVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFD 407

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
               S G  PDI T N++++ +G +G   ++   + E    G   +  T   L  SY R 
Sbjct: 408 EF-RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 466

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G++D    +   M +   +P V TYN V+    + G  E+ E+ F +M+ R  KP+  +Y
Sbjct: 467 GLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSY 526

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+ AY+ A  + K+ ++   + +  +         ++    +  ++ +  + FL +++
Sbjct: 527 SSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQ 586

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           + C  D      M+  Y   G     + +E  +  MKE++
Sbjct: 587 KRCSLDINVLNAMVSIY---GKNRMVRKVEKILSLMKESA 623



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 152/308 (49%), Gaps = 2/308 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ +F+ M + G +P    + +L+  YG++   DEA   I +M+ V  C P V TY+ 
Sbjct: 260 KEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVG-CPPSVVTYNS 318

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S  K    +    +  EM   G++   VTY T+I G  +A K +     +  MV + 
Sbjct: 319 LISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRN- 377

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC P++ T N++I  +G  G   +M   ++EF   G   DI T N L   +G+ G+  ++
Sbjct: 378 GCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEV 437

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V   M+K  + P   TY  +I ++ + G  +   + +K+M   G+ P+  TY +++SA
Sbjct: 438 SGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSA 497

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            ++ G   + + +  ++E  D   D   ++ ++ AY  A  ++KM  L   +      P 
Sbjct: 498 LARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPH 557

Query: 311 NITFATMI 318
           N    T++
Sbjct: 558 NWLVKTLV 565



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 165/336 (49%), Gaps = 9/336 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + K PE  ++ F+   S G  P +  +  L++ +GQ+GL  E      +MK      P+ 
Sbjct: 396 RGKFPEMMAV-FDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI-PER 453

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY  LI S ++   FDL  +I   M   GI     TYN ++    +  ++E+ E  F+ 
Sbjct: 454 DTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAE 513

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---IQTLNILTKSYG 182
           M E   C PD ++ +S++ AY N+  ++KM+   ++     ++     ++TL ++     
Sbjct: 514 M-EERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVN 572

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
              + +  ++ ++  QKR     +   N ++  +GK   + K+E+    MK   +  ++ 
Sbjct: 573 --NLAEAEKAFLELRQKRCSL-DINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAA 629

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+  YS+ G   K ++IL ++++S V  D   +N +I AYG+ G +++   LF  M
Sbjct: 630 TYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEM 689

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           K     PD +T+   +++Y +  M E A  L   M+
Sbjct: 690 KCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMV 725



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 153/321 (47%), Gaps = 2/321 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  D Y +L+S+Y + GL D A      M   + 
Sbjct: 425 LAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMME-AG 483

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PDV TY+ ++ +  +  R++  EK+ AEM     +    +Y++++  Y  AK+ ++M+
Sbjct: 484 IYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMK 543

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +  S  + S    P  + + +++       N+ + EK + E        DI  LN +   
Sbjct: 544 A-LSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSI 602

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  M  K+  ++  M++     +  TYN ++  + + G  EK E    ++K  G++P+
Sbjct: 603 YGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPD 662

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             +Y +++ AY + G + +   +  +++ S +  D   +N  + +Y      E+  EL  
Sbjct: 663 RYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVR 722

Query: 301 TMKERHCVPDNITFATMIQAY 321
            M  + C P+  T+ ++++ Y
Sbjct: 723 YMVTQGCKPNERTYNSIVEGY 743



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 133/287 (46%), Gaps = 2/287 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C   + A  +++ M+  G+ P V  Y A++SA  + G  ++A     +M+   DCKPD 
Sbjct: 465 RCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEE-RDCKPDE 523

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           Y+YS L+ +     R D ++ +  ++    IE       T++    K     E E +F  
Sbjct: 524 YSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLE 583

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           + +   C  DI  LN+M+S YG +  + K+EK  +      +     T N L   Y R G
Sbjct: 584 LRQKR-CSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLG 642

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             +K  +++  ++     P   +YN VI  +G+ G +++    F +MK  G+KP+ +TY 
Sbjct: 643 DCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYN 702

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
             V +Y    +  +   ++R +       +   +N I+  Y + G +
Sbjct: 703 IFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKL 749



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG C++ E  ++L E+  S G++P    Y  ++ AYG+ G + EA    ++MK  S  KP
Sbjct: 641 LGDCEKCE--NILTEIK-SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK-CSGLKP 696

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           DV TY+I +KS      F+   +++  M   G + +  TYN+I++GY +  K  +
Sbjct: 697 DVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTD 751



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ-AGDVEKMGE 297
           P++  Y +LVSA+S+AG      ++ R++ +S V      +N ++  Y + A   +++ E
Sbjct: 170 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 229

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGM-TEAAQ 331
           L  +MKE    PD  T+ T+I       +  EAAQ
Sbjct: 230 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQ 264


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 162/345 (46%), Gaps = 38/345 (11%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSIL 71
           A  +F  M+  G++P++  Y  ++  Y +  +   E    +  MK      PD YTY+ L
Sbjct: 173 AVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKE-HGVAPDRYTYNTL 231

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I  C +   +    ++  EM   G E   VT+N+++D YGKA++ +E       M E  G
Sbjct: 232 ISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEM-ERVG 290

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL----------------- 174
           C P + T NS+IS+Y   G +E+      E  + G+K D+ T                  
Sbjct: 291 CPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAI 350

Query: 175 ------------------NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
                             N L K +G  G + +M +V D  +   F P +VT+N ++  F
Sbjct: 351 VEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVF 410

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           G+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL      I +++  + +  D 
Sbjct: 411 GQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDV 470

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             +N ++SA  + G  E+  +LF  M+ER C PD  ++++++ AY
Sbjct: 471 STYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAY 515



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 163/340 (47%), Gaps = 5/340 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++ ++A  + + M   G  PSV  Y +L+S+Y + GLL++A +   +M+ V   KPD
Sbjct: 271 GKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEME-VKGMKPD 329

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ LI    +  + D       EM   G + +  TYN +I  +G   KF EM + F 
Sbjct: 330 VVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFD 389

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
               S G  PDI T N++++ +G +G   ++   + E    G   +  T   L  SY R 
Sbjct: 390 EF-RSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 448

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G++D    +   M +   +P V TYN V+    + G  E+ E+ F +M+ R  KP+  +Y
Sbjct: 449 GLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSY 508

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+ AY+ A  + K+ ++   + +  +         ++    +  ++ +  + FL +++
Sbjct: 509 SSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQ 568

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           + C  D      M+  Y   G     + +E  +  MKE++
Sbjct: 569 KRCSLDINVLNAMVSIY---GKNRMVRKVEKILSLMKESA 605



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 152/308 (49%), Gaps = 2/308 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ +F+ M + G +P    + +L+  YG++   DEA   I +M+ V  C P V TY+ 
Sbjct: 242 KEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVG-CPPSVVTYNS 300

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S  K    +    +  EM   G++   VTY T+I G  +A K +     +  MV + 
Sbjct: 301 LISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRN- 359

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC P++ T N++I  +G  G   +M   ++EF   G   DI T N L   +G+ G+  ++
Sbjct: 360 GCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEV 419

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V   M+K  + P   TY  +I ++ + G  +   + +K+M   G+ P+  TY +++SA
Sbjct: 420 SGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSA 479

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            ++ G   + + +  ++E  D   D   ++ ++ AY  A  ++KM  L   +      P 
Sbjct: 480 LARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPH 539

Query: 311 NITFATMI 318
           N    T++
Sbjct: 540 NWLVKTLV 547



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 165/336 (49%), Gaps = 9/336 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + K PE  ++ F+   S G  P +  +  L++ +GQ+GL  E      +MK      P+ 
Sbjct: 378 RGKFPEMMAV-FDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI-PER 435

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY  LI S ++   FDL  +I   M   GI     TYN ++    +  ++E+ E  F+ 
Sbjct: 436 DTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAE 495

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---IQTLNILTKSYG 182
           M E   C PD ++ +S++ AY N+  ++KM+   ++     ++     ++TL ++     
Sbjct: 496 M-EERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVN 554

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
              + +  ++ ++  QKR     +   N ++  +GK   + K+E+    MK   +  ++ 
Sbjct: 555 --NLAEAEKAFLELRQKRCSL-DINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAA 611

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+  YS+ G   K ++IL ++++S V  D   +N +I AYG+ G +++   LF  M
Sbjct: 612 TYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEM 671

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           K     PD +T+   +++Y +  M E A  L   M+
Sbjct: 672 KCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMV 707



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 153/321 (47%), Gaps = 2/321 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  D Y +L+S+Y + GL D A      M   + 
Sbjct: 407 LAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMME-AG 465

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PDV TY+ ++ +  +  R++  EK+ AEM     +    +Y++++  Y  AK+ ++M+
Sbjct: 466 IYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMK 525

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +  S  + S    P  + + +++       N+ + EK + E        DI  LN +   
Sbjct: 526 A-LSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSI 584

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  M  K+  ++  M++     +  TYN ++  + + G  EK E    ++K  G++P+
Sbjct: 585 YGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPD 644

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             +Y +++ AY + G + +   +  +++ S +  D   +N  + +Y      E+  EL  
Sbjct: 645 RYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVR 704

Query: 301 TMKERHCVPDNITFATMIQAY 321
            M  + C P+  T+ ++++ Y
Sbjct: 705 YMVTQGCKPNERTYNSIVEGY 725



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 133/287 (46%), Gaps = 2/287 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C   + A  +++ M+  G+ P V  Y A++SA  + G  ++A     +M+   DCKPD 
Sbjct: 447 RCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEE-RDCKPDE 505

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           Y+YS L+ +     R D ++ +  ++    IE       T++    K     E E +F  
Sbjct: 506 YSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLE 565

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           + +   C  DI  LN+M+S YG +  + K+EK  +      +     T N L   Y R G
Sbjct: 566 LRQKR-CSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLG 624

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             +K  +++  ++     P   +YN VI  +G+ G +++    F +MK  G+KP+ +TY 
Sbjct: 625 DCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYN 684

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
             V +Y    +  +   ++R +       +   +N I+  Y + G +
Sbjct: 685 IFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKL 731



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG C++ E  ++L E+  S G++P    Y  ++ AYG+ G + EA    ++MK  S  KP
Sbjct: 623 LGDCEKCE--NILTEIK-SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMK-CSGLKP 678

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           DV TY+I +KS      F+   +++  M   G + +  TYN+I++GY +  K  +
Sbjct: 679 DVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTD 733



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ-AGDVEKMGE 297
           P++  Y +LVSA+S+AG      ++ R++ +S V      +N ++  Y + A   +++ E
Sbjct: 152 PDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVE 211

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGM-TEAAQ 331
           L  +MKE    PD  T+ T+I       +  EAAQ
Sbjct: 212 LVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQ 246


>gi|168000535|ref|XP_001752971.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695670|gb|EDQ82012.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 391

 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 169/324 (52%), Gaps = 9/324 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  QP+ A+ LF+ M   G+K +   + AL+ +YG++    +A     DMK+ +DC+P 
Sbjct: 27  GRISQPQLAADLFDEMEKRGIKKTAVSFNALIHSYGRNNEAHKALQLFEDMKATNDCQPT 86

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY+ LI   ++    + ++K+  +    G      TYN +I GY +A +  +ME +F+
Sbjct: 87  LVTYNTLISMYSRMGATEEMKKLFLDCKEAGFSPDRHTYNALIWGYMRAGQLSQMEETFN 146

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + ++G C  D+ T N+ I  Y  +  + KME  ++     G+  +     IL + Y R 
Sbjct: 147 EL-QAGECKADVITYNAQIIGYARANAVNKMEAVFSSMQAAGIPINAMVGEILIEVYSRT 205

Query: 185 GMYDKMRSVMDFMQKRFFFPTV----VTYNIVIETFGKAGHIEKMEEYFKKM-KHRGMKP 239
             ++KM + +  M      P V      +++VIE++  A  +++ME    +M +++ M  
Sbjct: 206 KHFEKMENALKIMD---VTPGVQYGSRVHSMVIESYADANKLDEMEAAISRMFQNKRMFS 262

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  +  +L+ AYS+AG   ++   +  V+ +  IL +  +N +IS YG+ G +++M ++F
Sbjct: 263 SPKSLHALIMAYSRAGEYGRLAKTMEVVKGAGWILQSSIYNILISEYGKGGHLDRMEQVF 322

Query: 300 LTMKERHCVPDNITFATMIQAYNA 323
             M +  C P   TF  MI AY A
Sbjct: 323 REMMDASCPPSFETFQYMIDAYEA 346



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 117/260 (45%), Gaps = 2/260 (0%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ +I    +  +  L   +  EM   GI+ +AV++N +I  YG+  +  +    F  M 
Sbjct: 19  YAKMISFAGRISQPQLAADLFDEMEKRGIKKTAVSFNALIHSYGRNNEAHKALQLFEDMK 78

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            +  C P + T N++IS Y   G  E+M+K + +    G   D  T N L   Y RAG  
Sbjct: 79  ATNDCQPTLVTYNTLISMYSRMGATEEMKKLFLDCKEAGFSPDRHTYNALIWGYMRAGQL 138

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            +M    + +Q       V+TYN  I  + +A  + KME  F  M+  G+  N++    L
Sbjct: 139 SQMEETFNELQAGECKADVITYNAQIIGYARANAVNKMEAVFSSMQAAGIPINAMVGEIL 198

Query: 248 VSAYSKAGLIMKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KER 305
           +  YS+     K+++ L+ ++    V   +   + +I +Y  A  +++M      M + +
Sbjct: 199 IEVYSRTKHFEKMENALKIMDVTPGVQYGSRVHSMVIESYADANKLDEMEAAISRMFQNK 258

Query: 306 HCVPDNITFATMIQAYNALG 325
                  +   +I AY+  G
Sbjct: 259 RMFSSPKSLHALIMAYSRAG 278



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 16/211 (7%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG-------MYDKMRSVM 194
           MIS  G     +     ++E    G+K    + N L  SYGR         +++ M++  
Sbjct: 22  MISFAGRISQPQLAADLFDEMEKRGIKKTAVSFNALIHSYGRNNEAHKALQLFEDMKATN 81

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D        PT+VTYN +I  + + G  E+M++ F   K  G  P+  TY +L+  Y +A
Sbjct: 82  DCQ------PTLVTYNTLISMYSRMGATEEMKKLFLDCKEAGFSPDRHTYNALIWGYMRA 135

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G + +++    +++  +   D   +N  I  Y +A  V KM  +F +M+      + +  
Sbjct: 136 GQLSQMEETFNELQAGECKADVITYNAQIIGYARANAVNKMEAVFSSMQAAGIPINAMVG 195

Query: 315 ATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
             +I+ Y+    T+  + +EN +  M    G
Sbjct: 196 EILIEVYS---RTKHFEKMENALKIMDVTPG 223



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G + N   Y  ++S   +         +  ++E   +      FN +I +YG+  +  K 
Sbjct: 11  GWEANPKEYAKMISFAGRISQPQLAADLFDEMEKRGIKKTAVSFNALIHSYGRNNEAHKA 70

Query: 296 GELFLTMKERH-CVPDNITFATMIQAYNALGMTEAAQNL 333
            +LF  MK  + C P  +T+ T+I  Y+ +G TE  + L
Sbjct: 71  LQLFEDMKATNDCQPTLVTYNTLISMYSRMGATEEMKKL 109


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 179/377 (47%), Gaps = 40/377 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKP-DVYTY 68
             A  +F  M+++G++P++  Y  ++  Y +  +   +  + ++ MK+  D  P D YTY
Sbjct: 195 RDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVVALVDSMKN--DGIPLDRYTY 252

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + LI  C +   +    K+  EM   G E   VT+N+++D YGKA+  +E       M E
Sbjct: 253 NTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVLKEM-E 311

Query: 129 SGGCHPDIFTLNSMISAY-----------------------------------GNSGNIE 153
            GGC P + T NS+IS+Y                                     +G I+
Sbjct: 312 LGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKID 371

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                Y+E    G K ++ T N L K +G  G + +M +V D ++   F P VVT+N ++
Sbjct: 372 AAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLL 431

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
             FG+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL  +   I +++  + + 
Sbjct: 432 AVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIY 491

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   +N ++SA  + G  E+  +LF  M+   C PD +++++++ AY      +  + L
Sbjct: 492 PDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKAL 551

Query: 334 ENKMIAMKENSGKKLIQ 350
              + A K  S   L++
Sbjct: 552 SEDIYAEKIESHHGLVK 568



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 165/364 (45%), Gaps = 37/364 (10%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK +  ++A  + + M   G  PSV  Y +L+S+Y + GLL EA     +M+ V   +PD
Sbjct: 295 GKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEME-VKGIQPD 353

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ LI    +  + D       EM   G + +  TYN +I  +G   KF EM + F 
Sbjct: 354 VITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFD 413

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +  S G  PD+ T N++++ +G +G   ++   + E    G   +  T   L  SY R 
Sbjct: 414 DL-RSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRC 472

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G++D+   +   M +   +P + TYN V+    + G  E+ E+ F +M++   +P+ ++Y
Sbjct: 473 GLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSY 532

Query: 245 CSLVSAYSKA----------------------GLIMKVDSILRQVEN------------- 269
            SL+ AY+ A                      GL+  +  +  +V N             
Sbjct: 533 SSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGR 592

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
               LD    N ++S YG+   V+K+ E+   MK         T+ +++  Y+ LG  E 
Sbjct: 593 RRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEK 652

Query: 330 AQNL 333
            +N+
Sbjct: 653 CENI 656



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 157/326 (48%), Gaps = 12/326 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  D Y +L+S+Y + GL D++      M   + 
Sbjct: 431 LAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIE-AG 489

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM- 119
             PD+ TY+ ++ +  +  R++  EK+ AEM  L      ++Y++++  Y  AKK ++M 
Sbjct: 490 IYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMK 549

Query: 120 ---ESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
              E  ++  +ES  G    +  +NS ++      N+ + EK + E        DI  LN
Sbjct: 550 ALSEDIYAEKIESHHGLVKTLVLVNSKVN------NLSETEKAFLELGRRRCSLDINVLN 603

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +   YG+  M  K+  ++  M+      +  TYN ++  + + G  EK E    ++K  
Sbjct: 604 AMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSS 663

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G +P+  +Y +++ AY + G + +   +  ++++S +I D   +N  + +Y      E+ 
Sbjct: 664 GARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEA 723

Query: 296 GELFLTMKERHCVPDNITFATMIQAY 321
            +L   M  R C P+  T+ +++Q Y
Sbjct: 724 IDLVRYMVTRGCKPNERTYNSILQEY 749



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 168/336 (50%), Gaps = 9/336 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + K PE  ++ F+ + S G  P V  +  L++ +GQ+GL  E      +MK  S   P+ 
Sbjct: 402 RGKFPEMMAV-FDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKK-SGYVPER 459

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY  LI S ++   FD   +I   M   GI     TYN ++    +  ++E+ E  F+ 
Sbjct: 460 DTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAE 519

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---IQTLNILTKSYG 182
           M E+  C PD  + +S++ AY N+  ++KM+    +     +++    ++TL ++     
Sbjct: 520 M-ENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVN 578

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
              + +  ++ ++  ++R     +   N ++  +GK   ++K+EE    MK   +  ++ 
Sbjct: 579 --NLSETEKAFLELGRRRCSL-DINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTA 635

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+  YS+ G   K ++IL ++++S    D   +N +I AYG+ G +++   LF  M
Sbjct: 636 TYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEM 695

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           K    +PD +T+   +++Y A  M E A +L   M+
Sbjct: 696 KSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMV 731


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 170/338 (50%), Gaps = 4/338 (1%)

Query: 2   VMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           VM G CK+   ++A  L  +M     KP+  +Y+ ++ A+ + G+LD A S +N+MK  S
Sbjct: 184 VMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKS 243

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD++TYS LI +  K  +++ +  +  EM +L I  +  T+N++IDG  K  K E+ 
Sbjct: 244 -IPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDA 302

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E     M+E G   PD+ T N +I  YG  G +++  + ++      ++ +I + NIL  
Sbjct: 303 EEIMRYMIEKG-VDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILIN 361

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y R    D+   V   + ++   P++VT N+++    + G  +  + +F +M   G  P
Sbjct: 362 GYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIP 421

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  T+C+L+  Y K GL+ +  S   ++E      +   +  +I    + G ++K    F
Sbjct: 422 DLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATF 481

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +      PD IT+  MI  Y   G+ + A+++  KM
Sbjct: 482 EKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKM 519



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 5/313 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-- 68
           + A  LF  M+     PSV  ++ L+ A      +    S ++  + +   +  V+ +  
Sbjct: 54  DDAFSLFRQMVRTKPLPSVVSFSKLLKALVH---MKHYSSVVSLFREIHKLRIPVHEFIL 110

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           SI++ SC   HR DL   +LA     GI  + V +NT++ G     K ++    F  +V 
Sbjct: 111 SIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVR 170

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
              C P+     ++++     G+ +K             K +    +I+  ++ + GM D
Sbjct: 171 ENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLD 230

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
              S+++ M+++   P + TY+ +I+   K    E +   F +M H  + PN  T+ S++
Sbjct: 231 GATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVI 290

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               K G +   + I+R +    V  D   +N II  YG  G V++  E+F +M  +   
Sbjct: 291 DGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIE 350

Query: 309 PDNITFATMIQAY 321
           P+ I++  +I  Y
Sbjct: 351 PNIISYNILINGY 363



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 147/335 (43%), Gaps = 38/335 (11%)

Query: 11  EQASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           + A  LF+ ++ + + +P+  +Y  +++   + G   +AF  +  M+  S  KP+   YS
Sbjct: 159 KDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGS-TKPNTCIYS 217

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           I+I +  K    D    +L EM    I     TY+T+ID   K  ++E + + F  M+  
Sbjct: 218 IVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHL 277

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
              +P++ T NS+I      G +E  E+                                
Sbjct: 278 N-IYPNVCTFNSVIDGLCKEGKVEDAEE-------------------------------- 304

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              +M +M ++   P V+TYN++I+ +G  G +++  E F  M ++ ++PN I+Y  L++
Sbjct: 305 ---IMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILIN 361

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            Y++   I +   + R++    +       N ++    + G  +     F  M     +P
Sbjct: 362 GYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIP 421

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           D  T  T++  Y   G+ E A +  +K+   +E++
Sbjct: 422 DLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDT 456



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 130/268 (48%), Gaps = 4/268 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK+   E A  +   M+  G+ P V  Y  ++  YG  G +D A    + M + S
Sbjct: 289 VIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKS 348

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +P++ +Y+ILI    +  + D   ++  E+S  G++ S VT N ++ G  +  + +  
Sbjct: 349 -IEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSA 407

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           ++ F  M+ +G   PD++T  +++  Y  +G +E+    +++        +IQ    +  
Sbjct: 408 QNFFDEMLSAGHI-PDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVID 466

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G  DK  +  + +      P V+TY  +I  + + G +++ ++  +KM+  G   
Sbjct: 467 GLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLA 526

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQV 267
           ++ TY  +V  + ++  + ++ + L ++
Sbjct: 527 DNRTYNVIVRGFLRSNKVSEMKAFLEEI 554



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/257 (19%), Positives = 106/257 (41%), Gaps = 35/257 (13%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q ++A  +F+ M++  ++P++  Y  L++ Y +   +DEA     ++ S    KP + T 
Sbjct: 333 QVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREI-SQKGLKPSIVTC 391

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF----- 123
           ++L+    +  R    +    EM   G      T+ T++ GY K    EE  S F     
Sbjct: 392 NVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLER 451

Query: 124 --------------SAMVESG---------------GCHPDIFTLNSMISAYGNSGNIEK 154
                           + ++G               G HPD+ T  +MIS Y   G +++
Sbjct: 452 RREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDE 511

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
            +    +    G  AD +T N++ + + R+    +M++ ++ +  + F     T  ++++
Sbjct: 512 AKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571

Query: 215 TFGKAGHIEKMEEYFKK 231
              +   +  M   F +
Sbjct: 572 IIAEDPSLLNMIPEFHR 588


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 162/333 (48%), Gaps = 2/333 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++P++A  + + M S+  +PSV  Y +LVSAY + GLL++A      M      KPD
Sbjct: 296 GKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVD-KGIKPD 354

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VYTY+ L+       + +L  ++  EM  +G + +  T+N +I  YG   KFEEM   F 
Sbjct: 355 VYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFK 414

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             ++   C PDI T N++++ +G +G   ++   + E        +  T N L  +YGR 
Sbjct: 415 E-IKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRC 473

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G +D+  +    M +    P + TYN V+ T  + G  E+ E+   +MK  G KPN +TY
Sbjct: 474 GSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTY 533

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+ AY+    + +++++  ++ +  +         ++    +   + +    FL  ++
Sbjct: 534 SSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRK 593

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           R   PD  T   M+  Y    M   A  + N M
Sbjct: 594 RGISPDVTTSNAMLSIYGRKKMVPKANEILNFM 626



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 147/291 (50%), Gaps = 8/291 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LFE +   G +P    Y AL+  YG+S    EA   +  M+S S  +P V TY+ 
Sbjct: 267 EEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNS-FRPSVVTYNS 325

Query: 71  LIKSCTKFHRFDLIEKILA---EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           L+ +   + R  L+E  L    +M   GI+    TY T++ G+  A K E     F  M 
Sbjct: 326 LVSA---YVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEM- 381

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
              GC P+I T N++I  YG+ G  E+M K + E  +     DI T N L   +G+ GM 
Sbjct: 382 RKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMD 441

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            ++  V + M++  F P   T+N +I  +G+ G  ++    +K+M   G+ P+  TY ++
Sbjct: 442 SEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAV 501

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           ++  ++ GL  + + +L ++++     +   ++ ++ AY    +VE+M  L
Sbjct: 502 LATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNAL 552



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 167/349 (47%), Gaps = 36/349 (10%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVY 66
           K+   A  +F  M   G +P++  Y A+++ YG+ G+   +  + + DMK      PD+ 
Sbjct: 193 KKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMK-CHGLAPDLC 251

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEM 119
           TY+ LI  C     ++    +  E+   G    AVTYN ++D YGK+++        ++M
Sbjct: 252 TYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQM 311

Query: 120 ESS------------FSAMVESG---------------GCHPDIFTLNSMISAYGNSGNI 152
           ES+             SA V  G               G  PD++T  +++S + N+G  
Sbjct: 312 ESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKE 371

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           E   + + E   +G K +I T N L K YG  G +++M  V   ++     P +VT+N +
Sbjct: 372 ELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTL 431

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           +  FG+ G   ++   F++MK     P   T+ +L+SAY + G   +  +  +++  + V
Sbjct: 432 LAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGV 491

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             D   +N +++   + G  E+  ++   MK+  C P+ +T+++++ AY
Sbjct: 492 SPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAY 540



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 174/354 (49%), Gaps = 6/354 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +FE M      P  D +  L+SAYG+ G  D+A +    M   + 
Sbjct: 432 LAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLE-AG 490

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+ TY+ ++ +  +   ++  EK+LAEM   G + + VTY++++  Y   ++ E M 
Sbjct: 491 VSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERM- 549

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           ++ +  + SG        L +++        + + E+ + EF   G+  D+ T N +   
Sbjct: 550 NALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSI 609

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YGR  M  K   +++FM +     ++ +YN ++  + +  +  K E+ F+++  +G++P+
Sbjct: 610 YGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPD 669

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            I+Y  ++ AY +  ++ +   I+ +++    + D   +N  I+AY       +  ++  
Sbjct: 670 VISYNIVIYAYCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIR 729

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAA----QNLENKMIAMKENSGKKLIQ 350
            M ++ C P++ T+ +++  Y  L + + A    QNL +    + E+   +L++
Sbjct: 730 YMIKQGCKPNHNTYNSIVDWYCKLKLRDEACSFVQNLGDLDPQISEDEKSRLLE 783



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 153/337 (45%), Gaps = 3/337 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK  +  +A+ L   + +DG +  V  YT+L++AY  +    +A      MK V  C+
Sbjct: 153 ILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVG-CE 211

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY+ ++    K    +  I  ++ +M   G+     TYNT+I        +EE   
Sbjct: 212 PTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALD 271

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F   ++  G  PD  T N+++  YG S   ++  +   +      +  + T N L  +Y
Sbjct: 272 LFEE-IKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAY 330

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R G+ +    +   M  +   P V TY  ++  F  AG  E   E F++M+  G KPN 
Sbjct: 331 VRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNI 390

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T+ +L+  Y   G   ++  + ++++      D   +N +++ +GQ G   ++  +F  
Sbjct: 391 CTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEE 450

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           MK     P+  TF T+I AY   G  + A     +M+
Sbjct: 451 MKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRML 487



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 122/261 (46%), Gaps = 2/261 (0%)

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           ++++    K  R      +L  +   G E     Y ++I  Y   KK+ +    F  M E
Sbjct: 148 AVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKE 207

Query: 129 SGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
             GC P + T N++++ YG  G    K+     +    G+  D+ T N L        +Y
Sbjct: 208 V-GCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLY 266

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           ++   + + ++   F P  VTYN +++ +GK+   ++  E  K+M+    +P+ +TY SL
Sbjct: 267 EEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSL 326

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           VSAY + GL+     + R++ +  +  D   +  ++S +  AG  E   E+F  M++  C
Sbjct: 327 VSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGC 386

Query: 308 VPDNITFATMIQAYNALGMTE 328
            P+  TF  +I+ Y   G  E
Sbjct: 387 KPNICTFNALIKMYGDRGKFE 407



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 89/198 (44%), Gaps = 1/198 (0%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           ++S  G +G + +     +     G + D+     L  +Y     Y     V   M++  
Sbjct: 150 IVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVG 209

Query: 202 FFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
             PT++TYN ++  +GK G    K+    + MK  G+ P+  TY +L+S      L  + 
Sbjct: 210 CEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEA 269

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +  +++ +    D   +N ++  YG++   ++  E+   M+     P  +T+ +++ A
Sbjct: 270 LDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSA 329

Query: 321 YNALGMTEAAQNLENKMI 338
           Y   G+ E A  L+ KM+
Sbjct: 330 YVRGGLLEDALVLKRKMV 347



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 6/97 (6%)

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           +VS   K G + +  S+L  +E     +D   +  +I+AY          ++F  MKE  
Sbjct: 150 IVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGKMKEVG 209

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           C P  IT+  ++  Y  +GM  A      K+IA+ ++
Sbjct: 210 CEPTLITYNAILNVYGKMGMPWA------KIIALVQD 240


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 171/345 (49%), Gaps = 34/345 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A ++F+ +  +G +P++  Y  +++ YG+ G+     + + D    S   PD+YTY+ 
Sbjct: 237 REAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNT 296

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS- 122
           LI SC +   ++   ++  EM   G     VTYN ++D YGK+++        +EME+S 
Sbjct: 297 LISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASG 356

Query: 123 -----------FSAMVESG---------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                       SA    G               G  PD+FT  +++S +  +G  +   
Sbjct: 357 FAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAM 416

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           K + E  + G + +I T N L K +G  G + +M  V + ++     P +VT+N ++  F
Sbjct: 417 KVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVF 476

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           G+ G   ++   FK+MK  G  P   T+ +L+SAYS+ G   +  +I R++ ++ V  D 
Sbjct: 477 GQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDL 536

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             +N +++A  + G  E+  ++   MK+  C P+ +T+ +++ AY
Sbjct: 537 STYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAY 581



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 157/331 (47%), Gaps = 2/331 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++P +A  + + M + G  PS+  Y +L+SAY + GLLDEA    + M      KPD
Sbjct: 337 GKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVK-KGIKPD 395

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V+TY+ L+    K  + D   K+  EM   G + +  T+N +I  +G    F EM   F 
Sbjct: 396 VFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFE 455

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             ++   C PDI T N++++ +G +G   ++   + E    G   +  T N L  +Y R 
Sbjct: 456 E-IKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRC 514

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G +D+  ++   M      P + TYN V+    + G  E+ E+   +MK    KPN +TY
Sbjct: 515 GFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTY 574

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           CSL+ AY+    + ++ ++  ++ +  +         ++  Y ++  + +    FL ++E
Sbjct: 575 CSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELRE 634

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
           +   PD  T   M+  Y    M      + N
Sbjct: 635 QGFSPDITTLNAMVSIYGRRRMVSKTNEILN 665



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 175/354 (49%), Gaps = 6/354 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  D +  L+SAY + G  D+A +    M   + 
Sbjct: 473 LAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLD-AG 531

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+ TY+ ++ +  +   ++  EK+LAEM     + + +TY +++  Y   K+ E M 
Sbjct: 532 VTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERM- 590

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+ +  + SG   P    L +++  Y  S  + + E+ + E    G   DI TLN +   
Sbjct: 591 SALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSI 650

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YGR  M  K   +++F++   F P++ TYN ++  + +  H EK E+  +++  +GMKP+
Sbjct: 651 YGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPD 710

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            I++ +++ AY + G + +   I  ++++  +  D   +N  I++Y       +  ++  
Sbjct: 711 IISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVK 770

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAA----QNLENKMIAMKENSGKKLIQ 350
            M +  C P+  T+ ++I  +  L   + A     NL N   ++ ++  ++L++
Sbjct: 771 YMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNLDPSVTKDEERRLLE 824



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 160/337 (47%), Gaps = 3/337 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK  +   A+ L   + +DG+   +  YT+L++AY  +G   EA      ++    C+
Sbjct: 194 VLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEE-EGCR 252

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY++++    K    +  I  ++  M   G+     TYNT+I    +   +EE   
Sbjct: 253 PTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAE 312

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M ++ G  PD  T N+++  YG S    +  +   E    G    I T N L  +Y
Sbjct: 313 VFEEM-KAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAY 371

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R G+ D+   +   M K+   P V TY  ++  F K G  +   + F++M+  G +PN 
Sbjct: 372 ARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNI 431

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T+ +L+  +   G  +++  +  +++  + + D   +N +++ +GQ G   ++  +F  
Sbjct: 432 CTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKE 491

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           MK    VP+  TF T+I AY+  G  + A  +  +M+
Sbjct: 492 MKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRML 528



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 1/198 (0%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +IS  G  G         ++    GV  DI     L  +Y   G Y +   V   +++  
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 202 FFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
             PT++TYN+++  +GK G    K+      MK  G+ P+  TY +L+S+  +  L  + 
Sbjct: 251 CRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEA 310

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +  +++ +    D   +N ++  YG++    +  E+   M+     P  +T+ ++I A
Sbjct: 311 AEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISA 370

Query: 321 YNALGMTEAAQNLENKMI 338
           Y   G+ + A  L+++M+
Sbjct: 371 YARDGLLDEAMELKSQMV 388



 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 4/151 (2%)

Query: 193 VMDFMQKRFFFPTVVTYNIV---IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           V  F++ R  F ++++ ++V   I   GK G           +++ G+  +   Y SL++
Sbjct: 169 VFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLIT 228

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DVEKMGELFLTMKERHCV 308
           AY+  G   +   + +++E          +N I++ YG+ G    K+  L  +MK     
Sbjct: 229 AYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVA 288

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           PD  T+ T+I +     + E A  +  +M A
Sbjct: 289 PDLYTYNTLISSCRRGSLYEEAAEVFEEMKA 319


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 181/384 (47%), Gaps = 40/384 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCK 62
           L +  +   A  +F  M+++G+ P++  Y  ++  Y +  +   E  + ++ M+   D  
Sbjct: 186 LSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLALVDSMRK--DGI 243

Query: 63  P-DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P D YTY+ LI  C +   +    K+  EM   G E   VT N+++D YGKA++++E   
Sbjct: 244 PLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIG 303

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW----------------------- 158
               M E GGC P + T NS+IS+Y   G +E+  +                        
Sbjct: 304 VLKEM-EQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGL 362

Query: 159 ------------YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
                       YNE    G K ++ T N L K +G  G + +M  V D ++   F P V
Sbjct: 363 DRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDV 422

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VT+N ++  FG+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL  +   I ++
Sbjct: 423 VTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKR 482

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +  + +  D   +N ++SA  + G  E+  +LF  M+     PD +++++++ AY     
Sbjct: 483 MIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKK 542

Query: 327 TEAAQNLENKMIAMKENSGKKLIQ 350
            +  ++L   + A +  S   L++
Sbjct: 543 LDKMKSLSEDIYAERIESHNGLVK 566



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 169/364 (46%), Gaps = 37/364 (10%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++ ++A  + + M   G  PSV  Y +L+S+Y + GLL+EA     +M+ V   +PD
Sbjct: 293 GKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEME-VKGIEPD 351

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ L+    +  + D       EM   G + +  TYN +I  +G   KF EM   F 
Sbjct: 352 VITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFD 411

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             + S G  PD+ T N++++ +G +G   ++   + E    G   +  T   L  SY R 
Sbjct: 412 E-IRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRC 470

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G++D+   +   M +    P + TYN V+    + G  E+ E+ F +M++   +P+ ++Y
Sbjct: 471 GLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSY 530

Query: 245 CSLVSAYSKA----------------------GLIMKVDSILRQVEN-SDV--------- 272
            SL+ AY+ A                      GL+  +  +  +V N SD          
Sbjct: 531 SSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRR 590

Query: 273 ---ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
               LD    N +IS YG+ G V+K+ E+   MKE        T+ +++  Y+ LG  E 
Sbjct: 591 RRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEK 650

Query: 330 AQNL 333
            +N+
Sbjct: 651 CENI 654



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 175/397 (44%), Gaps = 70/397 (17%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A+ L E M   G++P V  YT LVS   ++G +D A  T N+M   + CKP++ TY+ 
Sbjct: 334 EEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLR-NGCKPNLCTYNA 392

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LIK      +F  +  +  E+   G     VT+NT++  +G+     E+   F  M +SG
Sbjct: 393 LIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSG 452

Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                                             G HPDI T N+++SA    G  E+ E
Sbjct: 453 YVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAE 512

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD--------------------- 195
           K + E   +  + D  + + L  +Y  A   DKM+S+ +                     
Sbjct: 513 KLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVN 572

Query: 196 --------------FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
                          +++R     +   N +I  +GK G ++K+EE    MK   +  ++
Sbjct: 573 SKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLST 632

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY SL+  YS+ G   K ++IL ++++S    D   +N +I AYG+ G +++   LF  
Sbjct: 633 ATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSE 692

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           MK    VPD +T+   +++Y A  M E A +L   M+
Sbjct: 693 MKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMV 729



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 157/330 (47%), Gaps = 12/330 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  D Y +L+S+Y + GL D+A      M   + 
Sbjct: 429 LAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIE-AG 487

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM- 119
             PD+ TY+ ++ +  +  R++  EK+ AEM  L      ++Y++++  Y  AKK ++M 
Sbjct: 488 IHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMK 547

Query: 120 ---ESSFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
              E  ++  +ES  G    +  +NS ++      N+   EK + E        DI  LN
Sbjct: 548 SLSEDIYAERIESHNGLVKTLVLVNSKVN------NLSDTEKAFLELRRRRCSLDINVLN 601

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +   YG+ GM  K+  ++  M++     +  TYN ++  + + G  EK E    ++K  
Sbjct: 602 AMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSS 661

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
             +P+  +Y +++ AY + G + +   +  +++ S ++ D   +N  + +Y      E+ 
Sbjct: 662 RARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEA 721

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALG 325
            +L   M    C P+  T+ T++Q Y + G
Sbjct: 722 IDLVRYMVTHGCKPNERTYNTILQEYCSHG 751



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 149/315 (47%), Gaps = 43/315 (13%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMES 121
           PD   Y+ LI + ++  RF     +   M   G+  + VTYN ++  Y K A  ++E+ +
Sbjct: 174 PDASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLA 233

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
              +M    G   D +T N++IS        ++  K ++E    G + D  TLN L   Y
Sbjct: 234 LVDSM-RKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVY 292

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+A  YD+   V+  M++    P+VVTYN +I ++ K G +E+  +  ++M+ +G++P+ 
Sbjct: 293 GKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDV 352

Query: 242 ITYCSLVSAYSKAGLIMKVDS--------------------------------------I 263
           ITY +LVS   +AG   K+D+                                      +
Sbjct: 353 ITYTTLVSGLDRAG---KIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIV 409

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             ++ ++  + D   +N +++ +GQ G   ++  +F  MK+   VP+  T+ ++I +Y+ 
Sbjct: 410 FDEIRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSR 469

Query: 324 LGMTEAAQNLENKMI 338
            G+ + A  +  +MI
Sbjct: 470 CGLFDQAMEIYKRMI 484


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 171/345 (49%), Gaps = 34/345 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A ++F+ +  +G +P++  Y  +++ YG+ G+     + + D    S   PD+YTY+ 
Sbjct: 237 REAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNT 296

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS- 122
           LI SC +   ++   ++  EM   G     VTYN ++D YGK+++        +EME+S 
Sbjct: 297 LISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASG 356

Query: 123 -----------FSAMVESG---------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                       SA    G               G  PD+FT  +++S +  +G  +   
Sbjct: 357 FAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAM 416

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           K + E  + G + +I T N L K +G  G + +M  V + ++     P +VT+N ++  F
Sbjct: 417 KVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVF 476

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           G+ G   ++   FK+MK  G  P   T+ +L+SAYS+ G   +  +I R++ ++ V  D 
Sbjct: 477 GQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDL 536

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             +N +++A  + G  E+  ++   MK+  C P+ +T+ +++ AY
Sbjct: 537 STYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAY 581



 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 157/331 (47%), Gaps = 2/331 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++P +A  + + M + G  PS+  Y +L+SAY + GLLDEA    + M      KPD
Sbjct: 337 GKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVK-KGIKPD 395

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V+TY+ L+    K  + D   K+  EM   G + +  T+N +I  +G    F EM   F 
Sbjct: 396 VFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFE 455

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             ++   C PDI T N++++ +G +G   ++   + E    G   +  T N L  +Y R 
Sbjct: 456 E-IKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRC 514

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G +D+  ++   M      P + TYN V+    + G  E+ E+   +MK    KPN +TY
Sbjct: 515 GFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTY 574

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           CSL+ AY+    + ++ ++  ++ +  +         ++  Y ++  + +    FL ++E
Sbjct: 575 CSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELRE 634

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
           +   PD  T   M+  Y    M      + N
Sbjct: 635 QGFSPDITTLNAMVSIYGRRRMVSKTNEILN 665



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 174/354 (49%), Gaps = 6/354 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  D +  L+SAY + G  D+A +    M     
Sbjct: 473 LAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAG- 531

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+ TY+ ++ +  +   ++  EK+LAEM     + + +TY +++  Y   K+ E M 
Sbjct: 532 VTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERM- 590

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+ +  + SG   P    L +++  Y  S  + + E+ + E    G   DI TLN +   
Sbjct: 591 SALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSI 650

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YGR  M  K   +++F++   F P++ TYN ++  + +  H EK E+  +++  +GMKP+
Sbjct: 651 YGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPD 710

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            I++ +++ AY + G + +   I  ++++  +  D   +N  I++Y       +  ++  
Sbjct: 711 IISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVK 770

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQ----NLENKMIAMKENSGKKLIQ 350
            M +  C P+  T+ ++I  +  L   + A     NL N   ++ ++  ++L++
Sbjct: 771 YMIKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLRNLDPSVTKDEERRLLE 824



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 160/337 (47%), Gaps = 3/337 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK  +   A+ L   + +DG+   +  YT+L++AY  +G   EA      ++    C+
Sbjct: 194 VLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEE-EGCR 252

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY++++    K    +  I  ++  M   G+     TYNT+I    +   +EE   
Sbjct: 253 PTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAE 312

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M ++ G  PD  T N+++  YG S    +  +   E    G    I T N L  +Y
Sbjct: 313 VFEEM-KAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAY 371

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R G+ D+   +   M K+   P V TY  ++  F K G  +   + F++M+  G +PN 
Sbjct: 372 ARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNI 431

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T+ +L+  +   G  +++  +  +++  + + D   +N +++ +GQ G   ++  +F  
Sbjct: 432 CTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKE 491

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           MK    VP+  TF T+I AY+  G  + A  +  +M+
Sbjct: 492 MKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRML 528



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 1/198 (0%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +IS  G  G         ++    GV  DI     L  +Y   G Y +   V   +++  
Sbjct: 191 IISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEG 250

Query: 202 FFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
             PT++TYN+++  +GK G    K+      MK  G+ P+  TY +L+S+  +  L  + 
Sbjct: 251 CRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEA 310

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +  +++ +    D   +N ++  YG++    +  E+   M+     P  +T+ ++I A
Sbjct: 311 AEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISA 370

Query: 321 YNALGMTEAAQNLENKMI 338
           Y   G+ + A  L+++M+
Sbjct: 371 YARDGLLDEAMELKSQMV 388



 Score = 45.4 bits (106), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 4/151 (2%)

Query: 193 VMDFMQKRFFFPTVVTYNIV---IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           V  F++ R  F ++++ ++V   I   GK G           +++ G+  +   Y SL++
Sbjct: 169 VFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLIT 228

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DVEKMGELFLTMKERHCV 308
           AY+  G   +   + +++E          +N I++ YG+ G    K+  L  +MK     
Sbjct: 229 AYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVA 288

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           PD  T+ T+I +     + E A  +  +M A
Sbjct: 289 PDLYTYNTLISSCRRGSLYEEAAEVFEEMKA 319


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 163/345 (47%), Gaps = 9/345 (2%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G C++   ++A  + E  +  G +P    Y   +    ++  +D+AF  +  M   
Sbjct: 12  VVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDE- 70

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C P   TY+ L+    K  R D    +L +M   G   +  TY  +IDG  KA + EE
Sbjct: 71  KKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEE 130

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA----DIQTL 174
               F  M+   GC PD F   ++I     SG  E+    Y E N     A    D+ T 
Sbjct: 131 ARRIFVDML-GNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTY 189

Query: 175 NILTKSYGRAGMYDKMRSVMD-FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
             L     +AG   + R V D    +R F P  VTY  +I+   K G +E+  E F +M+
Sbjct: 190 TSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMR 249

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           +RG +P+++TY +L+  + KA +I K   + RQ+  S  ++ T  +N I+    +AG V 
Sbjct: 250 NRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVA 309

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +    FL M+ER CV   +T++ ++  + + G   AA  L  +M+
Sbjct: 310 EAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML 354



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 153/341 (44%), Gaps = 6/341 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS---TINDMKSVSD 60
           L K  + E+A  +F  ML +G +P   VYTAL+    +SG  +EA++     N  K  + 
Sbjct: 122 LSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHAT 181

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILA-EMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             PDV TY+ LI    K  R     ++   E    G    AVTY +IIDG  K  + EE 
Sbjct: 182 AVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEG 241

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M  + G  PD  T  ++I  +  +  I K  + Y +    G      T NI+  
Sbjct: 242 CERFHEM-RNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILD 300

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              +AG   +  +    M++R    TVVTY+ +++ F   G++    E F++M  RG +P
Sbjct: 301 GLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEP 360

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG-EL 298
           N ++Y  ++    +AG + K      ++    +  D   FN  +    Q  D    G EL
Sbjct: 361 NLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVEL 420

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           F +M  +   P+  +++ ++      G  E A  +  +M++
Sbjct: 421 FESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVS 461



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 139/321 (43%), Gaps = 5/321 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + ++A  + E M+  G  P++  YT ++    ++G ++EA     DM   + C+P
Sbjct: 87  LLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLG-NGCRP 145

Query: 64  DVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           D + Y+ LIK   K  +    + L ++  A   +       VTY ++IDG  KA +  E 
Sbjct: 146 DAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEA 205

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F       G  PD  T  S+I      G +E+  + ++E    G + D  T   L  
Sbjct: 206 RQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALID 265

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + +A M  K   V   M +     + VTYNI+++   KAG + +    F  M+ RG   
Sbjct: 266 GFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVA 325

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
             +TY +L+  +   G +     + R++ +     +   +N II    +AG + K    F
Sbjct: 326 TVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYF 385

Query: 300 LTMKERHCVPDNITFATMIQA 320
             + +R   PD  TF   +  
Sbjct: 386 EKLLQRRLCPDVYTFNAFLHG 406



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 135/324 (41%), Gaps = 39/324 (12%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G  P    YT+++    + G ++E     ++M++    +PD  TY+ LI    K      
Sbjct: 217 GFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRN-RGYEPDAVTYAALIDGFMKAKMIPK 275

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             ++  +M   G   S VTYN I+DG  KA +  E  ++F AM E  GC   + T ++++
Sbjct: 276 AHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAM-EERGCVATVVTYSALM 334

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             + + GN+    + +      G + ++ + NI+ +   RAG   K     + + +R   
Sbjct: 335 DGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLC 394

Query: 204 PTVVTYN------------------------------------IVIETFGKAGHIEKMEE 227
           P V T+N                                    I+++   +AG +E   E
Sbjct: 395 PDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALE 454

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
            F++M  RG+ P+ + + +L+     AG + +   + R++E      D   +  ++    
Sbjct: 455 IFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAP-DAWSYWSLLDGLS 513

Query: 288 QAGDVEKMGELFLTMKERHCVPDN 311
           +   +E+   L   MK + C P +
Sbjct: 514 RCERMEEARLLSFHMKLQGCAPRH 537



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 77/180 (42%)

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
           M    D+    ++     R    D+  SV++   +    P  VTYN+ I+   KA  ++ 
Sbjct: 1   MPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDD 60

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
             +  KKM  +   P ++TY +LV    KAG + +  ++L Q+           +  +I 
Sbjct: 61  AFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVID 120

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
              +AG VE+   +F+ M    C PD   +  +I+     G  E A  L  +  A K ++
Sbjct: 121 GLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHA 180


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 170/342 (49%), Gaps = 11/342 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK KQ  +A   F +M      P+   +  L++AY +   L++A    ++MK  S+  P 
Sbjct: 94  GKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAEKLFHEMKE-SNYSPG 152

Query: 65  ---------VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
                    + TY+  ++   K  R    E    +M   GI  +  T+  +I+ YGKA  
Sbjct: 153 TVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYY 212

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
            ++ +  F +M     C P+++T  ++++A+   GN  + E+ + E   +G   D+ T N
Sbjct: 213 SDKADDLFRSM-RKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYN 271

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L ++Y R       + V   M +    P  V+YNI+I+ FG+AG     +  +  MK  
Sbjct: 272 ALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEA 331

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G KP   ++  L+S+Y+KAG + + + ++R++ENS V  DT  FN ++SAYG +G +++M
Sbjct: 332 GFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEM 391

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             L  +M      PD  T  T+I AY   G  E A+ + N +
Sbjct: 392 ESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSL 433



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 164/319 (51%), Gaps = 37/319 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK  +  QA   F  M   G+ P+V+ +T +++ YG++   D+A      M+  + C 
Sbjct: 171 VLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRK-ALCP 229

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++YTY+ L+ +  +       E+I AE+                               
Sbjct: 230 PNLYTYTALMNAHAREGNCVRAEEIFAEL------------------------------- 258

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
                +S G  PD++T N+++ AY    +    ++ +      GV+ D  + NIL  ++G
Sbjct: 259 -----QSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFG 313

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           RAG+    ++V D M++  F PT+ ++ +++ ++ KAG + + E   +++++ G+KP++ 
Sbjct: 314 RAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTF 373

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            + SL+SAY  +G I +++S+L  + +S    D    N +I+AY Q G +EK  E+F ++
Sbjct: 374 MFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSL 433

Query: 303 KERHCVPDNITFATMIQAY 321
           + +   PD +++ +++ AY
Sbjct: 434 ESKGLTPDVMSWTSLMGAY 452



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 155/302 (51%), Gaps = 6/302 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK    ++A  LF  M      P++  YTAL++A+ + G    A     +++SV    PD
Sbjct: 208 GKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFI-PD 266

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VYTY+ L+++ ++       +++   M   G+    V+YN +ID +G+A    + ++ + 
Sbjct: 267 VYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYD 326

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           +M E+G   P + +   ++S+Y  +G + + E+   E    GVK D    N L  +YG +
Sbjct: 327 SMKEAG-FKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNS 385

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D+M S+++ M      P + T N +I  + + G+IEK EE F  ++ +G+ P+ +++
Sbjct: 386 GRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSW 445

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+ AY++  L  K  SI +++  +  I D       +S+      V+++ +    M E
Sbjct: 446 TSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFLSSCRSPEQVKEVTD----MIE 501

Query: 305 RH 306
           RH
Sbjct: 502 RH 503



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 154/346 (44%), Gaps = 12/346 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           L + +      L+ E +L   + KP V  +  L+ AYG+S    EA  T + MK    C 
Sbjct: 57  LRRLRNWRSVILILEWILQGTMFKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDF-QCL 115

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV---------TYNTIIDGYGKA 113
           P   ++++L+ + ++  + +  EK+  EM         V         TYNT ++  GK+
Sbjct: 116 PTETSFNVLLAAYSRGVQLEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKS 175

Query: 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
            +  + E +F  M +  G  P + T   MI+ YG +   +K +  +          ++ T
Sbjct: 176 GRLSQAEDTFRDM-QKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYT 234

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
              L  ++ R G   +   +   +Q   F P V TYN ++E + +  H    +E F+ M 
Sbjct: 235 YTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMV 294

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G++P+ ++Y  L+ A+ +AGL     ++   ++ +           ++S+Y +AG V 
Sbjct: 295 EAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVT 354

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +   L   ++     PD   F +++ AY   G  +  ++L   M++
Sbjct: 355 EAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVS 400



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 98/217 (45%), Gaps = 24/217 (11%)

Query: 133 HPDIF-TLNSMISAYG-------NSGNIEKMEKWYN-----EFNLMGV--KADIQTLNIL 177
           H D++  L+++    G       N   + ++  W +     E+ L G   K D+   N+L
Sbjct: 30  HQDVWDVLDALPRGIGTWEAIMENVAELRRLRNWRSVILILEWILQGTMFKPDVGCFNML 89

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             +YG++  + +       M+     PT  ++N+++  + +   +EK E+ F +MK    
Sbjct: 90  IDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAEKLFHEMKESNY 149

Query: 238 KPNSI---------TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            P ++         TY + +    K+G + + +   R ++   ++     F  +I+ YG+
Sbjct: 150 SPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGK 209

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           A   +K  +LF +M++  C P+  T+  ++ A+   G
Sbjct: 210 AYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREG 246


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score =  154 bits (388), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 165/345 (47%), Gaps = 38/345 (11%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQ-SGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           A  +F  M+  G++P++  Y  ++  Y + S    E    ++ MK     + D YTY+ L
Sbjct: 204 AVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVVLVDSMKE-DGIELDRYTYNTL 262

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I  C +   +    ++  EM   G E   VT+N+++D YGKA++ EE       M E+ G
Sbjct: 263 ISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKM-ENAG 321

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL----------------- 174
           C P + T NS+ISAY   G +E+  +   E    G+K D+ T                  
Sbjct: 322 CTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAAL 381

Query: 175 ------------------NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
                             N L K +G  G + +M  V D ++   + P VVT+N ++  F
Sbjct: 382 ATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVF 441

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           G+ G   ++   FK+MK  G  P   TY SL+S+YS+ GL  +   I +++  + +  D 
Sbjct: 442 GQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDI 501

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             +N ++SA  + G   +  +LF  M++R C PD +++++++ AY
Sbjct: 502 STYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAY 546



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 160/340 (47%), Gaps = 5/340 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++ E+A  + + M + G  PSV  Y +L+SAY + GLL+EA     +M+     KPD
Sbjct: 302 GKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEME-FRGMKPD 360

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ LI    +  + D      +EM   G   +  TYN +I  +G   KF EM   F 
Sbjct: 361 VVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFD 420

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +  S G  PD+ T N++++ +G +G   ++   + E    G   +  T   L  SY R 
Sbjct: 421 DL-RSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 479

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G++D+   +   M +   +P + TYN V+    + G   + E+ F +M+ R  KP+ ++Y
Sbjct: 480 GLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSY 539

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+ AY+ A  + K+ ++   +    +         ++    +   + +  + F  ++ 
Sbjct: 540 SSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRR 599

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           R C  D      M+  Y   G  +  + +E  +  MKENS
Sbjct: 600 RRCSLDINVLNAMVSIY---GKNKMVKKVEEVLTLMKENS 636



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 170/337 (50%), Gaps = 6/337 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A+ +F+ M + G +P    + +L+  YG++   +EA   +  M++ + C P V TY+ 
Sbjct: 273 REAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMEN-AGCTPSVVTYNS 331

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI +  K    +   ++  EM + G++   VTY T+I G  +  K +   +++S MV +G
Sbjct: 332 LISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNG 391

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P++ T N++I  +G  G   +M   +++    G   D+ T N L   +G+ G+  ++
Sbjct: 392 -CSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEV 450

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V   M+K  + P   TY  +I ++ + G  ++  E +K+M   G+ P+  TY +++SA
Sbjct: 451 SGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSA 510

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            ++ G  ++ + +  ++E+ D   D   ++ ++ AY  A  ++KM  L   +  +   P 
Sbjct: 511 LARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPH 570

Query: 311 NITFATMI---QAYNALGMTEAA-QNLENKMIAMKEN 343
           N    T++      N+L  TE A Q L  +  ++  N
Sbjct: 571 NWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDIN 607



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 160/336 (47%), Gaps = 3/336 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  D Y +L+S+Y + GL D+A      M   + 
Sbjct: 438 LAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIE-AG 496

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+ TY+ ++ +  +  R+   EK+ AEM     +   ++Y++++  Y  AKK ++M+
Sbjct: 497 IYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMK 556

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +  S  + +    P  + + +++       ++ + EK + E        DI  LN +   
Sbjct: 557 A-LSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSI 615

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+  M  K+  V+  M++     +  TYN ++  + + G  EK E    ++K  GM+P+
Sbjct: 616 YGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPD 675

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             +Y +++ AY + G + +   +  +++ S V  D   +N  I +Y      E+  +L  
Sbjct: 676 RYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVR 735

Query: 301 TMKERHCVPDNITFATMIQAYNALG-MTEAAQNLEN 335
            +  + C P+  T+ ++++ Y   G M EA   L N
Sbjct: 736 YLVAQGCKPNERTYNSILEGYCRHGRMVEAKSFLSN 771



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 154/325 (47%), Gaps = 2/325 (0%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 74
           ++F+ + S G  P V  +  L++ +GQ+GL  E      +MK      P+  TY  LI S
Sbjct: 417 IVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYI-PERDTYVSLISS 475

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
            ++   FD   +I   M   GI     TYN ++    +  ++ + E  F+ M E   C P
Sbjct: 476 YSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEM-EDRDCKP 534

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D  + +S++ AY N+  ++KM+    +     ++     +  L     +     +     
Sbjct: 535 DELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAF 594

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             +++R     +   N ++  +GK   ++K+EE    MK   +  ++ TY SL+  YS+ 
Sbjct: 595 QELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRL 654

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G   K ++IL ++++S +  D   +N +I AYG+ G +++   LF  MK     PD +T+
Sbjct: 655 GDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTY 714

Query: 315 ATMIQAYNALGMTEAAQNLENKMIA 339
              I++Y A  M E A +L   ++A
Sbjct: 715 NIFIKSYVANLMFEEAIDLVRYLVA 739



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 113/255 (44%), Gaps = 35/255 (13%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE--AFS------------------- 50
           QA  LF  M     KP    Y++L+ AY  +  LD+  A S                   
Sbjct: 519 QAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLV 578

Query: 51  -TINDMKSVSD------------CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 97
              N + S+S+            C  D+   + ++    K      +E++L  M    I 
Sbjct: 579 LVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTLMKENSIN 638

Query: 98  CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 157
            SA TYN+++  Y +    E+ E+  +  ++S G  PD ++ N++I AYG  G +++  +
Sbjct: 639 HSAATYNSLMHMYSRLGDCEKCEAILTE-IKSSGMRPDRYSYNTVIYAYGRKGQMKEASR 697

Query: 158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
            ++E    GVK DI T NI  KSY    M+++   ++ ++  +   P   TYN ++E + 
Sbjct: 698 LFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNSILEGYC 757

Query: 218 KAGHIEKMEEYFKKM 232
           + G + + + +   +
Sbjct: 758 RHGRMVEAKSFLSNL 772


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 172/345 (49%), Gaps = 38/345 (11%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS-TINDMKSVSDCKPDVYTYSIL 71
           A L+F+ M  +G KP++  Y  +++ YG+ G+     S  ++ MKS S   PD YTY+ L
Sbjct: 236 AVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKS-SGVAPDDYTYNTL 294

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEME-SSF 123
           I  C +   ++   ++  EM   G     VT+NT++D YGK+++        +EME S F
Sbjct: 295 ISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGF 354

Query: 124 SA---------------------------MVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
           S                            MVE G   PD+FT  +++S +  +G  E   
Sbjct: 355 SPSIVTYNSLISAYARDGLLREAMELKDQMVEKG-IKPDVFTYTTLLSGFEKAGMDEPAM 413

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           + + E    G K +I T N L K +G  G + +M  V + ++     P +VT+N ++  F
Sbjct: 414 RIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVF 473

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           G+ G   ++   FK+MK  G  P   T+ +L+SAYS+ G   +  ++ +++  + V  D 
Sbjct: 474 GQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDL 533

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             +N +++A  + G  E+  ++F  MK+  C P+ +T+ +++ AY
Sbjct: 534 SSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAY 578



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 170/379 (44%), Gaps = 44/379 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++P++A  + + M   G  PS+  Y +L+SAY + GLL EA   + D       KPD
Sbjct: 334 GKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAME-LKDQMVEKGIKPD 392

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V+TY+ L+    K    +   +I  EM   G + +  T+N +I  +G   +F EM   F 
Sbjct: 393 VFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFE 452

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +E   C PDI T N++++ +G +G   ++   + E    G   +  T N L  +Y R 
Sbjct: 453 E-IEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRC 511

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G + +  +V   M +    P + +YN V+    + G  E+ E+ F +MK    KPN +TY
Sbjct: 512 GSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTY 571

Query: 245 CSLVSAYSK---------------AGLIMKVDSILRQV----ENSDVILDTPF------- 278
           CSL+ AY+                +GL   V  +L+ +       D++++T         
Sbjct: 572 CSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKK 631

Query: 279 --------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEA 329
                    N +I+ YG+   V K  E+   M E         F+  +  YN+L  M   
Sbjct: 632 KGSPDLSTLNAMIAIYGRRQMVAKANEILNFMNES-------GFSPSLATYNSLMYMHSR 684

Query: 330 AQNLENKMIAMKENSGKKL 348
           ++N E     +KE   K L
Sbjct: 685 SENFERSEEVLKEILAKGL 703



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 156/339 (46%), Gaps = 3/339 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + MLGK  +   AS +   +  DG    V  YT+L++AY  +G   +A      M+    
Sbjct: 189 ITMLGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEE-EG 247

Query: 61  CKPDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           CKP + TY++++    K    +  I  ++  M   G+     TYNT+I    +   +EE 
Sbjct: 248 CKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEA 307

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M  SG   PD  T N+++  YG S   ++  +   E    G    I T N L  
Sbjct: 308 AQVFEEMKLSG-FSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLIS 366

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +Y R G+  +   + D M ++   P V TY  ++  F KAG  E     F +M+  G KP
Sbjct: 367 AYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKP 426

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N  T+ +L+  +   G   ++  +  ++E  +   D   +N +++ +GQ G   ++  +F
Sbjct: 427 NICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVF 486

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             MK    VP+  TF T+I AY+  G  + A  +  +M+
Sbjct: 487 KEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRML 525



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 140/288 (48%), Gaps = 2/288 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A+ +FE M   G  P    +  L+  YG+S    EA   + +M+  S   P + TY+ 
Sbjct: 305 EEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEME-FSGFSPSIVTYNS 363

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI +  +        ++  +M   GI+    TY T++ G+ KA   E     F  M  + 
Sbjct: 364 LISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEM-RAA 422

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC P+I T N++I  +GN G   +M K + E  +     DI T N L   +G+ GM  ++
Sbjct: 423 GCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEV 482

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V   M++  F P   T+N +I  + + G  ++    +K+M   G+ P+  +Y ++++A
Sbjct: 483 SGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAA 542

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            ++ GL  + + +  ++++     +   +  ++ AY  + ++E+M  L
Sbjct: 543 LARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTL 590



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 151/321 (47%), Gaps = 3/321 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  D +  L+SAY + G   +A +    M   + 
Sbjct: 470 LAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLE-AG 528

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+ +Y+ ++ +  +   ++  EK+ AEM     + + +TY +++  Y  +K+ E M 
Sbjct: 529 VTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMH 588

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +  +  + SG   P    L +++        + + E  + E    G   D+ TLN +   
Sbjct: 589 T-LAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKG-SPDLSTLNAMIAI 646

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YGR  M  K   +++FM +  F P++ TYN ++    ++ + E+ EE  K++  +G+KP+
Sbjct: 647 YGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPD 706

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            I+Y +++ AY + G +     I   ++   ++ D   +N  +++Y      E    +  
Sbjct: 707 LISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVR 766

Query: 301 TMKERHCVPDNITFATMIQAY 321
            M +  C  +  T+ +++  Y
Sbjct: 767 YMIKHGCKRNQNTYNSIVDGY 787



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 4/245 (1%)

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
           + CS V    II   GK  K     S  + +    G   D++   S+I+AY ++G     
Sbjct: 180 LNCSVVA--VIITMLGKEGKVSAASSILNNL-RKDGFDLDVYAYTSLITAYASNGRYRDA 236

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
              + +    G K  + T N++   YG+ GM + K+  ++  M+     P   TYN +I 
Sbjct: 237 VLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLIS 296

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
              +    E+  + F++MK  G  P+ +T+ +L+  Y K+    +   +L+++E S    
Sbjct: 297 CCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSP 356

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
               +N +ISAY + G + +  EL   M E+   PD  T+ T++  +   GM E A  + 
Sbjct: 357 SIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIF 416

Query: 335 NKMIA 339
            +M A
Sbjct: 417 GEMRA 421



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 122/298 (40%), Gaps = 44/298 (14%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C   +QA  +++ ML  G+ P +  Y A+++A  + GL +++     +MK    CKP+ 
Sbjct: 510 RCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKD-GRCKPNE 568

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGI-ECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            TY  L+ +       + +   LAE  Y G+ E   V   T++    K     E E +F 
Sbjct: 569 LTYCSLLHAYANSKEIERMH-TLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFE 627

Query: 125 AMVESGGCHPDIFTLNSMISAYGN-----------------------------------S 149
            + + G   PD+ TLN+MI+ YG                                    S
Sbjct: 628 ELKKKGS--PDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRS 685

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
            N E+ E+   E    G+K D+ + N +  +Y R G       +  +M+     P V+TY
Sbjct: 686 ENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITY 745

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AGLIMKVDSI 263
           N  + ++      E      + M   G K N  TY S+V  Y K    A  IM V S+
Sbjct: 746 NTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGYCKHSRRADAIMFVSSL 803


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 160/300 (53%), Gaps = 2/300 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  +   A  LF  M+S   KP++  YTALV+A+ + GL ++A      M+  +  +
Sbjct: 269 LYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQE-AGLE 327

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDVY Y+ L+++ ++        +I + M ++G E    +YN ++D YGKA   ++ E+ 
Sbjct: 328 PDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAV 387

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  G  P + +   ++SAY   G++ K E+  N+    G+K D   LN +   YG
Sbjct: 388 FKDM-KRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYG 446

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G + KM  V+  M+K  +   + TYNI+I  +G+AG IE+ME+ F+ +  +G+KP+ +
Sbjct: 447 RLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVV 506

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+ S + AYSK  L +K   I  ++ +     D      +++A       E++  +  TM
Sbjct: 507 TWTSRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTM 566



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 161/354 (45%), Gaps = 35/354 (9%)

Query: 14  SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 73
           S+   ++L    KP V  Y  L+ A+GQ  L  EA ST   +   + C P   TY++LIK
Sbjct: 140 SICRWILLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLE-ARCIPTEDTYALLIK 198

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE----- 128
           +       +  E + AEM   G+  SAV YN  I+G  K    ++ E  F  M +     
Sbjct: 199 AYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKP 258

Query: 129 -----------------------------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
                                        S  C P+I T  ++++A+   G  EK E+ +
Sbjct: 259 TTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVF 318

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
            +    G++ D+   N L ++Y RAG       +   MQ     P   +YNI+++ +GKA
Sbjct: 319 EQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKA 378

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G  +  E  FK MK  G+ P   ++  L+SAYSK G + K + IL Q+  S + LDT   
Sbjct: 379 GFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVL 438

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           N +++ YG+ G   KM E+   M++   V D  T+  +I  Y   G  E  ++L
Sbjct: 439 NSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDL 492



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 159/312 (50%), Gaps = 2/312 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +F  M + GL  S  VY A ++   + G  D+A      MK  + CKP   TY++
Sbjct: 207 EKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDA-CKPTTETYTM 265

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  +  +  K+  EM     + +  TY  +++ + +    E+ E  F  M E+G
Sbjct: 266 LINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAG 325

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD++  N+++ AY  +G      + ++    MG + D  + NIL  +YG+AG  D  
Sbjct: 326 -LEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDA 384

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +V   M++    PT+ ++ +++  + K G + K EE   +M   G+K ++    S+++ 
Sbjct: 385 EAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNL 444

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y + G   K++ +LR +E    + D   +N +I+ YGQAG +E+M +LF  +  +   PD
Sbjct: 445 YGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPD 504

Query: 311 NITFATMIQAYN 322
            +T+ + I AY+
Sbjct: 505 VVTWTSRIGAYS 516



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 148/311 (47%), Gaps = 6/311 (1%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEA-FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
           DG+ P +      +  Y + G+  E+ + +++ +    D   D++T ++ ++   ++   
Sbjct: 79  DGIFPVLSPTAQQILDYVEKGVESESIWGSLDMLPPTLDAWDDIFTVAVQLRMRKQWDSI 138

Query: 82  -DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
             +   IL   S+   +   + YN +I+ +G+   ++E ES++  ++E+  C P   T  
Sbjct: 139 ISICRWILLRSSF---KPDVICYNLLIEAFGQKLLYKEAESTYLQLLEAR-CIPTEDTYA 194

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I AY  SG +EK E  + E    G+ +     N       + G  DK   +   M+K 
Sbjct: 195 LLIKAYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKD 254

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              PT  TY ++I  +GKAG      + F +M     KPN  TY +LV+A+++ GL  K 
Sbjct: 255 ACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKA 314

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           + +  Q++ + +  D   +N ++ AY +AG      E+F  M+   C PD  ++  ++ A
Sbjct: 315 EEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDA 374

Query: 321 YNALGMTEAAQ 331
           Y   G  + A+
Sbjct: 375 YGKAGFQDDAE 385



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 108/236 (45%), Gaps = 2/236 (0%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           T   I+D   K  + E +  S   +  +     DIFT+   +       +I  + +W   
Sbjct: 88  TAQQILDYVEKGVESESIWGSLDMLPPTLDAWDDIFTVAVQLRMRKQWDSIISICRWI-- 145

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
                 K D+   N+L +++G+  +Y +  S    + +    PT  TY ++I+ +  +G 
Sbjct: 146 LLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGL 205

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           +EK E  F +M++ G+  +++ Y + ++   K G   K + I ++++       T  +  
Sbjct: 206 LEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTM 265

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I+ YG+AG      +LF  M    C P+  T+  ++ A+   G+ E A+ +  +M
Sbjct: 266 LINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQM 321



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 91/225 (40%), Gaps = 37/225 (16%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           P  A+ +F +M   G +P    Y  LV AYG++G  D+A +   DMK V    P + ++ 
Sbjct: 346 PYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVG-ITPTMKSHM 404

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAV---------------------------- 101
           +L+ + +K    +  E+IL +M   G++                                
Sbjct: 405 VLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKG 464

Query: 102 -------TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
                  TYN +I+ YG+A   E ME  F  ++ S G  PD+ T  S I AY       K
Sbjct: 465 SYVADISTYNILINRYGQAGFIERMEDLFQ-LLPSKGLKPDVVTWTSRIGAYSKKKLYLK 523

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
             + + E    G   D  T  +L  +       +++ +V+  M K
Sbjct: 524 CLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTMHK 568


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 166/371 (44%), Gaps = 46/371 (12%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
           +M     +P V VY  L+ AYGQ  L  +  ST  ++   S C P   TY++L+K+  K 
Sbjct: 145 IMNKSTFRPDVIVYNLLMDAYGQRSLYKDVESTYLELLE-SHCIPTEDTYALLLKAYCKS 203

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDG----------------------------- 109
              +  E + AEM   G+  SA+ YN  IDG                             
Sbjct: 204 GLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTY 263

Query: 110 ------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
                 YGK  K    ++ F  M  +  C P+I T  ++++A    G  EK E+ + +  
Sbjct: 264 TMLINVYGKESKSHMAQNIFDEM-RTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQ 322

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
             G + D+   N L +SY RAG       +   MQ     P   +YNI+++ +G+AG  E
Sbjct: 323 EAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHE 382

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
             +  F++MK  G+ P   ++  L+SAYS AG + K + I+ Q+  S +  DT   N ++
Sbjct: 383 DAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSML 442

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE---------AAQNLE 334
           + YG+ G   KM +LF TM++  C  D  T+  +I  Y   G  E          A+NLE
Sbjct: 443 NLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLE 502

Query: 335 NKMIAMKENSG 345
             ++      G
Sbjct: 503 PDVVTWTSRIG 513



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 166/328 (50%), Gaps = 2/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +F  M   GL PS  VY A +    + G   +A    + MK    C+P   TY++
Sbjct: 207 EKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKR-DGCQPTTDTYTM 265

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  +  + + I  EM     + +  T+  +++   +    E+ E  F  M E+G
Sbjct: 266 LINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAG 325

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD++  N+++ +Y  +G      + ++    MG + D  + NI+  +YGRAG+++  
Sbjct: 326 -YEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDA 384

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           ++V + M++    PT+ ++ +++  +  AG++ K E+   +M   G+KP++    S+++ 
Sbjct: 385 QAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNL 444

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y + G   K++ +   ++      D   +N +I+ YG+AG VE+M ELF  +  ++  PD
Sbjct: 445 YGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPD 504

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
            +T+ + I AY+   + +    L  KMI
Sbjct: 505 VVTWTSRIGAYSRKKLYKRCLELFEKMI 532



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 157/298 (52%), Gaps = 2/298 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  +   A  +F+ M +   KP++  +TALV+A  + GL ++A      M+  +  +PD
Sbjct: 271 GKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQE-AGYEPD 329

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VY Y+ L++S ++        +I + M ++G E    +YN ++D YG+A   E+ ++ F 
Sbjct: 330 VYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFE 389

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +  G  P + +   ++SAY ++GN+ K E    + +  G+K D   +N +   YGR 
Sbjct: 390 EM-KRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRL 448

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G + KM  +   MQK      + TYNI+I  +G+AG +E+MEE F+ +  + ++P+ +T+
Sbjct: 449 GQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTW 508

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            S + AYS+  L  +   +  ++ ++    D      ++SA      +E++  +  TM
Sbjct: 509 TSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTM 566



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 155/326 (47%), Gaps = 2/326 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  M  DG +P+ D YT L++ YG+      A +  ++M++   CKP++ T++ L
Sbjct: 243 KAVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRT-QRCKPNICTFTAL 301

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           + +  +    +  E+I  +M   G E     YN +++ Y +A  F    +   ++++  G
Sbjct: 302 VNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAG-FPYGAAEIFSLMQHMG 360

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C PD  + N M+ AYG +G  E  +  + E   +G+   +++  +L  +Y  AG   K  
Sbjct: 361 CEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCE 420

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++  M K    P     N ++  +G+ G   KME+ F  M+    + +  TY  L++ Y
Sbjct: 421 DIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVY 480

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            +AG + +++ + + +   ++  D   +   I AY +    ++  ELF  M +  C PD 
Sbjct: 481 GRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDG 540

Query: 312 ITFATMIQAYNALGMTEAAQNLENKM 337
            T   ++ A ++    E   N+   M
Sbjct: 541 GTAKVLLSACSSEEQIEQVTNVVRTM 566



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 2/195 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    E A  +FE M   G+ P++  +  L+SAY  +G + +    I  M   S  KPD
Sbjct: 376 GRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHK-SGLKPD 434

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            +  + ++    +  +F  +E + + M          TYN +I+ YG+A   E ME  F 
Sbjct: 435 TFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQ 494

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            ++ +    PD+ T  S I AY      ++  + + +    G   D  T  +L  +    
Sbjct: 495 -LLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSACSSE 553

Query: 185 GMYDKMRSVMDFMQK 199
              +++ +V+  M K
Sbjct: 554 EQIEQVTNVVRTMHK 568


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 157/306 (51%), Gaps = 2/306 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M + G+ P    Y  L++   +  L +EA +   DMKS+    PD  TY+ L+   
Sbjct: 91  LFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFV-PDKVTYNALLDVY 149

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R     ++L EM   G   S VTYN++I  Y +    +E     + MVE GG + D
Sbjct: 150 GKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVE-GGINLD 208

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +FT  +++S +  +G  E   + + E    G K +I T N L K +G  G + +M  V +
Sbjct: 209 VFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFE 268

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            ++     P +VT+N ++  FG+ G   ++   FK+MK  G  P   TY +L+SAYS+ G
Sbjct: 269 EIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCG 328

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
              +   I +++  + +  D   +N +++A  + G  E+  ++F  MK+  C P+ +T+ 
Sbjct: 329 SFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYC 388

Query: 316 TMIQAY 321
           +++ AY
Sbjct: 389 SLLHAY 394



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 151/312 (48%), Gaps = 10/312 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A+ +F+ M S G  P    Y AL+  YG+S    EA   + +M+ V+ C P + TY+ 
Sbjct: 121 EEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREME-VNGCSPSIVTYNS 179

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI +  +        ++  +M   GI     TY T++ G+ +A K E     F+ M  + 
Sbjct: 180 LISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEM-RAA 238

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC P+I T N++I  +GN G   +M K + E        DI T N L   +G+ GM  ++
Sbjct: 239 GCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEV 298

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V   M++  F P   TYN +I  + + G  ++  + +K+M   G+ P+  TY ++++A
Sbjct: 299 SGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAA 358

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-- 308
            ++ GL  + + I  ++++     +   +  ++ AY    ++ +M    L + E  C   
Sbjct: 359 LARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRM----LALAEEICSGV 414

Query: 309 --PDNITFATMI 318
             P  +   T++
Sbjct: 415 IEPHAVLLKTLV 426



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 155/321 (48%), Gaps = 2/321 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  D Y  L+SAY + G  D+A      M   + 
Sbjct: 286 LAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLE-AG 344

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+ TY+ ++ +  +   ++  EKI AEM     + + +TY +++  Y   K+   M 
Sbjct: 345 ITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRM- 403

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            + +  + SG   P    L +++        + + E  + E    G   D+ TLN +   
Sbjct: 404 LALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSI 463

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YGR  M+ K   +++FM +  F P++ TYN ++    ++ + E+ EE  K++  +G+KP+
Sbjct: 464 YGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPD 523

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +I+Y +++ AY + G + +   I  ++  S ++ D   +N  +++Y      E   ++  
Sbjct: 524 TISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVR 583

Query: 301 TMKERHCVPDNITFATMIQAY 321
            M +  C P+  T+ +++  Y
Sbjct: 584 YMIKHGCKPNQNTYNSVVDGY 604



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 158/337 (46%), Gaps = 3/337 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLGK  +   A+ L   +  DG    V  YT+L++A   +G   EA      M+    CK
Sbjct: 7   MLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEE-EGCK 65

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY++++    K    ++ I+ +   M   G+     TYNT+I    +    EE  +
Sbjct: 66  PTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAA 125

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M +S G  PD  T N+++  YG S   ++  +   E  + G    I T N L  +Y
Sbjct: 126 VFKDM-KSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAY 184

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R G+  +   + + M +      V TY  ++  F +AG  E     F +M+  G KPN 
Sbjct: 185 ARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNI 244

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T+ +L+  +   G   ++  +  +++NS  + D   +N +++ +GQ G   ++  +F  
Sbjct: 245 CTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKE 304

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           MK    VP+  T+ T+I AY+  G  + A ++  +M+
Sbjct: 305 MKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRML 341



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 159/368 (43%), Gaps = 37/368 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  + E A  +F  M + G KP++  + AL+  +G  G   E      ++K+ S C PD+
Sbjct: 221 RAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKN-SCCVPDI 279

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            T++ L+    +      +  +  EM   G      TYNT+I  Y +   F++    +  
Sbjct: 280 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKR 339

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+E+G   PD+ T N++++A    G  E+ EK + E      K +  T   L  +Y    
Sbjct: 340 MLEAG-ITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGK 398

Query: 186 MYDKMRSVMDF-----------------------------------MQKRFFFPTVVTYN 210
              +M ++ +                                    ++++ F P + T N
Sbjct: 399 EIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLN 458

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            ++  +G+     K  E    M   G  P+  TY SL+  +S++    + + +L+++   
Sbjct: 459 AMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAK 518

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +  DT  +N +I AY + G +++   +F  M+E   VPD IT+ T + +Y A  M E A
Sbjct: 519 GIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDA 578

Query: 331 QNLENKMI 338
            ++   MI
Sbjct: 579 IDVVRYMI 586



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 116/283 (40%), Gaps = 37/283 (13%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C   +QA  +++ ML  G+ P +  Y A+++A  + GL +++     +MK    CKP+ 
Sbjct: 326 RCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKD-GRCKPNE 384

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY  L+ +         +  +  E+    IE  AV   T++    K     E E +F  
Sbjct: 385 LTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLE 444

Query: 126 MVESGGCHPDIFTLNSMISAYGN-----------------------------------SG 150
           + +  G  PD+ TLN+M+S YG                                    S 
Sbjct: 445 L-KRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSE 503

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           N E+ E+   E    G+K D  + N +  +Y R G   +   +   M++    P V+TYN
Sbjct: 504 NFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYN 563

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
             + ++      E   +  + M   G KPN  TY S+V  Y K
Sbjct: 564 TFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCK 606



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 1/206 (0%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM-YDKMRSV 193
           D++   S+I+A  ++G   +    + +    G K  + T N++   YG+ GM ++K++ +
Sbjct: 32  DVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIKGL 91

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
            + M+     P   TYN +I    +    E+    FK MK  G  P+ +TY +L+  Y K
Sbjct: 92  FEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGK 151

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           +    +   +LR++E +        +N +ISAY + G +++  EL   M E     D  T
Sbjct: 152 SRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFT 211

Query: 314 FATMIQAYNALGMTEAAQNLENKMIA 339
           + T++  +   G  E+A  +  +M A
Sbjct: 212 YTTLLSGFVRAGKDESAMRVFAEMRA 237



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 2/206 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L E + S  ++P   +   LV    +  LL EA     ++K      PD+ T + ++   
Sbjct: 406 LAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKR-KGFSPDLSTLNAMLSIY 464

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +   F    +IL  M+  G   S  TYN+++  + +++ FE  E     ++ + G  PD
Sbjct: 465 GRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEIL-AKGIKPD 523

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             + N++I AY  +G +++  + ++E    G+  D+ T N    SY    M++    V+ 
Sbjct: 524 TISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVR 583

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGH 221
           +M K    P   TYN V++ + K  H
Sbjct: 584 YMIKHGCKPNQNTYNSVVDGYCKHNH 609



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 1/131 (0%)

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           ++I   GK G +         +   G   +   Y SL++A    G   +   + +++E  
Sbjct: 3   VIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 271 DVILDTPFFNCIISAYGQAG-DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
                   +N I++ YG+ G    K+  LF  MK    +PD  T+ T+I       + E 
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEE 122

Query: 330 AQNLENKMIAM 340
           A  +   M +M
Sbjct: 123 AAAVFKDMKSM 133


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 161/335 (48%), Gaps = 2/335 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK ++P++A  + + M ++G  P+   Y +L+SAY + GLL+EA      M      K
Sbjct: 308 VFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVH-KGIK 366

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+TY+ L+    K  + D   ++  EM  +G + +  T+N +I  +G   KF EM   
Sbjct: 367 PDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKV 426

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F   ++   C PDI T N++++ +G +G   ++   + E    G  A+  T N L  +Y 
Sbjct: 427 FDD-IKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYS 485

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G +D+  +V   M +    P + TYN V+    + G  E+ E+   +M+    KPN +
Sbjct: 486 RCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNEL 545

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y SL+ AY+    I ++++   ++ +  V         ++    ++  + +    FL +
Sbjct: 546 SYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLEL 605

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   PD  T   M+  Y    M   A  + N M
Sbjct: 606 RRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFM 640



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 158/318 (49%), Gaps = 3/318 (0%)

Query: 5   GKCKQP-EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           GK   P    + L E M S G+ P +  Y  L+S   +  L +EA      MK +    P
Sbjct: 239 GKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMK-LEGFTP 297

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY+ L+    K  R     K+L EM   G   ++VTYN++I  Y K    EE     
Sbjct: 298 DKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLK 357

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + MV  G   PD+FT  +++S +  +G  +   + + E   +G K +I T N L K +G 
Sbjct: 358 TQMVHKG-IKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGN 416

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +M  V D ++     P +VT+N ++  FG+ G   ++   FK+MK  G      T
Sbjct: 417 RGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDT 476

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +L+SAYS+ G   +  ++ + +  + V+ D   +N +++A  + G  E+  ++   M+
Sbjct: 477 FNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEME 536

Query: 304 ERHCVPDNITFATMIQAY 321
           +  C P+ +++++++ AY
Sbjct: 537 DGRCKPNELSYSSLLHAY 554



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 169/339 (49%), Gaps = 6/339 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     Q S +F+ M   G     D +  L+SAY + G  D+A +    M   + 
Sbjct: 446 LAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLE-AG 504

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+ TY+ ++ +  +   ++  EK+LAEM     + + ++Y++++  Y   K+ E M 
Sbjct: 505 VVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERM- 563

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           ++F+  + SG        L +++     S  + + E+ + E    G+  DI TLN +   
Sbjct: 564 NAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSI 623

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YGR  M  K   +++FM +  F P++ TYN ++  + ++ + +K EE  +++  +GMKP+
Sbjct: 624 YGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPD 683

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            I+Y +++ AY + G + +   I  ++++S ++ D   +N  I+ Y       +  ++  
Sbjct: 684 RISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVR 743

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAA----QNLEN 335
            M ++ C PD  T+ +++  Y  L     A    +NL N
Sbjct: 744 YMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNLSN 782



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 151/357 (42%), Gaps = 35/357 (9%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  M + G KP++  + AL+  +G  G   E     +D+K + +C PD+ T++ L+   
Sbjct: 391 VFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIK-LCNCSPDIVTWNTLLAVF 449

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----- 130
            +      +  I  EM   G      T+NT+I  Y +   F++  + + +M+E+G     
Sbjct: 450 GQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDL 509

Query: 131 -----------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
                                         C P+  + +S++ AY N   IE+M  +  E
Sbjct: 510 STYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEE 569

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
                V+     L  L     ++ +  +       +++R   P + T N ++  +G+   
Sbjct: 570 IYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQM 629

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           + K  E    M      P+  TY SL+  YS++    K + ILR+V    +  D   +N 
Sbjct: 630 VAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNT 689

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +I AY + G +++   +F  MK+   VPD +T+ T I  Y A  M   A ++   MI
Sbjct: 690 VIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMI 746



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 154/316 (48%), Gaps = 17/316 (5%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS---ILIKSC 75
           ++LSD   P+ D+   ++ A G S   D A +  + +++ ++   ++++ S   ++IK  
Sbjct: 111 LLLSDHPHPASDIL-GIIKALGFSNKCDLALAVFHWVRT-NNSNTNLFSSSAIPVIIKIL 168

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R      +L  +   G+      Y  +I+ Y  + ++ +  + F+ M +  GC+P 
Sbjct: 169 GKAGRVSSAASLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKM-QQDGCNPT 227

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GVKADIQTLNILTKSYGRAGMYDK 189
           + T N +++ YG  G       W N   L+      GV  D+ T N L     R  +Y++
Sbjct: 228 LITYNVVLNVYGKMG-----MPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEE 282

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              +   M+   F P  VTYN +++ FGK+   ++  +  ++M+  G  P S+TY SL+S
Sbjct: 283 AVHLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLIS 342

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           AY+K GL+ +   +  Q+ +  +  D   +  ++S + +AG  +   ++FL M+   C P
Sbjct: 343 AYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKP 402

Query: 310 DNITFATMIQAYNALG 325
           +  TF  +I+ +   G
Sbjct: 403 NICTFNALIKMHGNRG 418



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 153/337 (45%), Gaps = 3/337 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK  +   A+ L   + +DG+   V  YT L++AY  SG   +A +  N M+    C 
Sbjct: 167 ILGKAGRVSSAASLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQ-DGCN 225

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY++++    K    +  +  ++  M   G+     TYNT+I    +   +EE   
Sbjct: 226 PTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVH 285

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M +  G  PD  T N+++  +G S   ++  K   E    G      T N L  +Y
Sbjct: 286 LFQQM-KLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAY 344

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G+ ++   +   M  +   P V TY  ++  F KAG  +   + F +M+  G KPN 
Sbjct: 345 AKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNI 404

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T+ +L+  +   G   ++  +   ++  +   D   +N +++ +GQ G   ++  +F  
Sbjct: 405 CTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKE 464

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           MK    V +  TF T+I AY+  G  + A  +   M+
Sbjct: 465 MKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSML 501



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 126/301 (41%), Gaps = 37/301 (12%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C   +QA  +++ ML  G+ P +  Y A+++A  + GL +++   + +M+    CKP+ 
Sbjct: 486 RCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMED-GRCKPNE 544

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            +YS L+ +       + +     E+    +E  AV   T++    K+    E E +F  
Sbjct: 545 LSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLE 604

Query: 126 MVESGGCHPDIFTLNSMISAYGN-----------------------------------SG 150
           +    G  PDI TLN+M+S YG                                    S 
Sbjct: 605 L-RRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSE 663

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           N +K E+   E    G+K D  + N +  +Y R G   +   +   M+     P VVTYN
Sbjct: 664 NFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYN 723

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             I T+       +  +  + M  +G KP+  TY S+V  Y K     + +S ++ + N 
Sbjct: 724 TFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNLSNL 783

Query: 271 D 271
           D
Sbjct: 784 D 784



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++    KAG +    S+L  ++N  V +D   + C+I+AY  +G       LF  M++  
Sbjct: 164 IIKILGKAGRVSSAASLLLALQNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDG 223

Query: 307 CVPDNITFATMIQAYNALGM-----TEAAQNLENKMIAMKENSGKKLIQC 351
           C P  IT+  ++  Y  +GM     T   + + ++ +A    +   LI C
Sbjct: 224 CNPTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISC 273


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 165/334 (49%), Gaps = 6/334 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKP 63
           G+C++   A  +F+ M   G KP++  Y  ++ A G+ G+ L +A     +M+     +P
Sbjct: 248 GRCRE---ALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQK-EGVEP 303

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  T++ LI  C++   ++  +++ AEM   GIE    TYNT+ID   K  + E   S  
Sbjct: 304 DRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIM 363

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S+M       P++ T ++MI  YG  G  E+    Y++    GV+ D  + N L   Y +
Sbjct: 364 SSM-RLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAK 422

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G +D   +    M++      VVTYN +I+ +GK G  +     F KMK  G+ PN +T
Sbjct: 423 LGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLT 482

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+ AYSKAG+     SI  + + + +  D   ++ +I +  + G VE    L   M 
Sbjct: 483 YSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMT 542

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +    P+ +T+ ++I AY   G  +  +  +  M
Sbjct: 543 QAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNM 576



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 162/340 (47%), Gaps = 19/340 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPS--VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           LG   + E+A   +E M+  G   S    + + ++S  G+ G ++ A    N  +  +  
Sbjct: 172 LGNRGEWERALQGYEWMVQQGHLRSEWSKLASIMISTLGRLGKVEIALDVFNRAQK-AGF 230

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA----KK-- 115
             +VY YS ++ +  +  R     K+   M   G + + +TYNTIID  GK     KK  
Sbjct: 231 GNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKAL 290

Query: 116 --FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
             FEEM+          G  PD  T NS+I+        E  ++ + E    G++ DI T
Sbjct: 291 DIFEEMQKE--------GVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFT 342

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L  +  + G  +   S+M  M+ +   P VVTY+ +I+ +GK G  E+    +  MK
Sbjct: 343 YNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMK 402

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G++P+ ++Y +L+  Y+K G      +  + +E   +  D   +N +I AYG+ G  +
Sbjct: 403 ESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYK 462

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
               LF  MK    VP+ +T++ +I AY+  GM + A ++
Sbjct: 463 DAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSI 502



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 138/305 (45%), Gaps = 44/305 (14%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  Q E A+ +   M    + P+V  Y+ ++  YG+ G  +EA    +DMK  S  +PD 
Sbjct: 352 KGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKE-SGVRPDR 410

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            +Y+ LI    K  RFD       +M  +G++   VTYN +ID YGK  K+++    F  
Sbjct: 411 VSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDK 470

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M ++ G  P++ T +++I AY  +G  +     + EF   G+K D+   + L  S  + G
Sbjct: 471 M-KAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCG 529

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME------------------- 226
           + +    ++  M +    P +VTYN +I+ +G+ G ++ +E                   
Sbjct: 530 LVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRST 589

Query: 227 -----------------------EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
                                    F +M+  G+KPN +T+ ++++A S+   + +   +
Sbjct: 590 EIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQEASVL 649

Query: 264 LRQVE 268
           L Q+ 
Sbjct: 650 LEQMR 654



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 121/272 (44%), Gaps = 2/272 (0%)

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           SI+I +  +  + ++   +       G   +   Y+ ++  YG++ +  E    F AM +
Sbjct: 203 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAM-K 261

Query: 129 SGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
             GC P++ T N++I A G  G +++K    + E    GV+ D  T N L     R  ++
Sbjct: 262 KAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLW 321

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           +  + V   MQ+R     + TYN +I+   K G +E        M+ + + PN +TY ++
Sbjct: 322 EDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTM 381

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  Y K G   +   +   ++ S V  D   +N +I  Y + G  +        M+    
Sbjct: 382 IDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGL 441

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             D +T+  +I AY   G  + A  L +KM A
Sbjct: 442 KADVVTYNALIDAYGKQGKYKDAAGLFDKMKA 473


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 156/320 (48%), Gaps = 3/320 (0%)

Query: 3   MLGKCKQP-EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           + GK   P  + + L E M SDG+ P    Y  L++   +  L  EA     +MK+    
Sbjct: 252 VFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFS 311

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
             D  TY+ L+    K HR     K+L EM   G   S VTYN++I  Y +    +E   
Sbjct: 312 H-DKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAME 370

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             + M E G   PD+FT  +++S +  +G +E     + E    G K +I T N   K Y
Sbjct: 371 LKNQMAEKG-TKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMY 429

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G  G +  M  + D +      P +VT+N ++  FG+ G   ++   FK+MK  G  P  
Sbjct: 430 GNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T+ +L+SAYS+ G   +  ++ R++ ++ V  D   +N +++A  + G  E+  ++   
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549

Query: 302 MKERHCVPDNITFATMIQAY 321
           M++  C P+ +T+ +++ AY
Sbjct: 550 MEDGRCKPNELTYCSLLHAY 569



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 163/337 (48%), Gaps = 3/337 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLGK  +   A+ LF  +  DG    V  YT+L+SA+  SG   EA +    M+    CK
Sbjct: 182 MLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE-EGCK 240

Query: 63  PDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY++++    K    ++ I  ++ +M   GI   A TYNT+I    +    +E   
Sbjct: 241 PTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQ 300

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M  +G  H D  T N+++  YG S   ++  K  NE  L G    I T N L  +Y
Sbjct: 301 VFEEMKAAGFSH-DKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAY 359

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R GM D+   + + M ++   P V TY  ++  F +AG +E     F++M++ G KPN 
Sbjct: 360 ARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNI 419

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T+ + +  Y   G  + +  I  ++    +  D   +N +++ +GQ G   ++  +F  
Sbjct: 420 CTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKE 479

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           MK    VP+  TF T+I AY+  G  E A  +  +M+
Sbjct: 480 MKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRML 516



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 2/333 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  +P++A  +   M  +G  PS+  Y +L+SAY + G+LDEA    N M      KPD
Sbjct: 325 GKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAE-KGTKPD 383

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V+TY+ L+    +  + +    I  EM   G + +  T+N  I  YG   KF +M   F 
Sbjct: 384 VFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFD 443

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +   G  PDI T N++++ +G +G   ++   + E    G   + +T N L  +Y R 
Sbjct: 444 E-INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G +++  +V   M      P + TYN V+    + G  E+ E+   +M+    KPN +TY
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTY 562

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           CSL+ AY+    I  + S+  +V +  +         ++    +   + +    F  +KE
Sbjct: 563 CSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKE 622

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           R   PD  T  +M+  Y    M   A  + + M
Sbjct: 623 RGFSPDITTLNSMVSIYGRRQMVGKANEVLDYM 655



 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 164/328 (50%), Gaps = 3/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYS 69
            +A  +F+ M  +G KP++  Y  +++ +G+ G   ++  S +  MKS     PD YTY+
Sbjct: 225 REAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKS-DGIAPDAYTYN 283

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            LI  C +        ++  EM   G     VTYN ++D YGK+ + +E     + M E 
Sbjct: 284 TLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEM-EL 342

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G  P I T NS+ISAY   G +++  +  N+    G K D+ T   L   + RAG  + 
Sbjct: 343 NGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVES 402

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             ++ + M+     P + T+N  I+ +G  G    M + F ++   G+ P+ +T+ +L++
Sbjct: 403 AMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLA 462

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            + + G+  +V  + ++++ +  + +   FN +ISAY + G  E+   ++  M +    P
Sbjct: 463 VFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
           D  T+ T++ A    GM E ++ +  +M
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEM 550



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 146/288 (50%), Gaps = 2/288 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ +FE M + G       Y AL+  YG+S    EA   +N+M+ ++   P + TY+ 
Sbjct: 296 QEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEME-LNGFSPSIVTYNS 354

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI +  +    D   ++  +M+  G +    TY T++ G+ +A K E   + F  M  + 
Sbjct: 355 LISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEM-RNA 413

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC P+I T N+ I  YGN G    M K ++E N+ G+  DI T N L   +G+ GM  ++
Sbjct: 414 GCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEV 473

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V   M++  F P   T+N +I  + + G  E+    +++M   G+ P+  TY ++++A
Sbjct: 474 SGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAA 533

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            ++ G+  + + +L ++E+     +   +  ++ AY    ++  M  L
Sbjct: 534 LARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSL 581



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 158/331 (47%), Gaps = 2/331 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  + +  L+SAY + G  ++A +    M     
Sbjct: 461 LAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG- 519

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+ TY+ ++ +  +   ++  EK+LAEM     + + +TY +++  Y   K+   M 
Sbjct: 520 VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMH 579

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S  +  V SG   P    L +++        + + E+ ++E    G   DI TLN +   
Sbjct: 580 S-LAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSI 638

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YGR  M  K   V+D+M++R F P++ TYN ++    ++    K EE  +++  +G+KP+
Sbjct: 639 YGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPD 698

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            I+Y +++ AY +   +     I  ++ +S ++ D   +N  I +Y      E+   +  
Sbjct: 699 IISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVR 758

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
            M +  C P+  T+ +++  Y  L   + A+
Sbjct: 759 YMIKHGCRPNQNTYNSIVDGYCKLNRKDEAK 789



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 140/315 (44%), Gaps = 2/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P +  +  L++ +GQ+G+  E      +MK      P+  T++ LI + ++   F+ 
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERETFNTLISAYSRCGSFEQ 507

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +   M   G+     TYNT++    +   +E+ E   + M E G C P+  T  S++
Sbjct: 508 AMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM-EDGRCKPNELTYCSLL 566

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AY N   I  M     E     ++     L  L     +  +  +       +++R F 
Sbjct: 567 HAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFS 626

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P + T N ++  +G+   + K  E    MK RG  P+  TY SL+  +S++    K + I
Sbjct: 627 PDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEI 686

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           LR++    +  D   +N +I AY +   +     +F  M++   VPD IT+ T I +Y A
Sbjct: 687 LREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAA 746

Query: 324 LGMTEAAQNLENKMI 338
             M E A  +   MI
Sbjct: 747 DSMFEEAIGVVRYMI 761



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 77/169 (45%), Gaps = 1/169 (0%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           D   + I+    G+ G      ++ + +Q+  F   V +Y  +I  F  +G   +    F
Sbjct: 172 DNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVF 231

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIM-KVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           KKM+  G KP  ITY  +++ + K G    K+ S++ ++++  +  D   +N +I+   +
Sbjct: 232 KKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKR 291

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               ++  ++F  MK      D +T+  ++  Y      + A  + N+M
Sbjct: 292 GSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEM 340



 Score = 38.5 bits (88), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 7/131 (5%)

Query: 227 EYFKKMK-HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           ++F K K ++ M  NS+    ++S   K G +    ++   ++     LD   +  +ISA
Sbjct: 159 DWFMKQKDYQSMLDNSVI-AIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISA 217

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-----MTEAAQNLENKMIAM 340
           +  +G   +   +F  M+E  C P  IT+  ++  +  +G     +T   + +++  IA 
Sbjct: 218 FANSGRYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAP 277

Query: 341 KENSGKKLIQC 351
              +   LI C
Sbjct: 278 DAYTYNTLITC 288


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 3/320 (0%)

Query: 3   MLGKCKQP-EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           + GK   P  + + L E M SDG+ P    Y  L++   +  L  EA     +MK+    
Sbjct: 252 VFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAG-F 310

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
             D  TY+ L+    K HR     K+L EM   G   S VTYN++I  Y +    +E   
Sbjct: 311 SYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME 370

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             + M E G   PD+FT  +++S +  +G +E     + E    G K +I T N   K Y
Sbjct: 371 LKNQMAEKG-TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY 429

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G  G + +M  + D +      P +VT+N ++  FG+ G   ++   FK+MK  G  P  
Sbjct: 430 GNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T+ +L+SAYS+ G   +  ++ R++ ++ V  D   +N +++A  + G  E+  ++   
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549

Query: 302 MKERHCVPDNITFATMIQAY 321
           M++  C P+ +T+ +++ AY
Sbjct: 550 MEDGRCKPNELTYCSLLHAY 569



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 157/338 (46%), Gaps = 12/338 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  +P++A  +   M+ +G  PS+  Y +L+SAY + G+LDEA    N M      KPD
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAE-KGTKPD 383

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V+TY+ L+    +  + +    I  EM   G + +  T+N  I  YG   KF EM   F 
Sbjct: 384 VFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD 443

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +   G  PDI T N++++ +G +G   ++   + E    G   + +T N L  +Y R 
Sbjct: 444 E-INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G +++  +V   M      P + TYN V+    + G  E+ E+   +M+    KPN +TY
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTY 562

Query: 245 CSLVSAYSKAGLIMKVDSILRQV-----ENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           CSL+ AY+    I  + S+  +V     E   V+L T    C      +   + +    F
Sbjct: 563 CSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVC-----SKCDLLPEAERAF 617

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +KER   PD  T  +M+  Y    M   A  + + M
Sbjct: 618 SELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYM 655



 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 166/328 (50%), Gaps = 3/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYS 69
            +A  +F+ M  DG KP++  Y  +++ +G+ G   ++  S +  MKS     PD YTY+
Sbjct: 225 REAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKS-DGIAPDAYTYN 283

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            LI  C +        ++  EM   G     VTYN ++D YGK+ + +E     + MV +
Sbjct: 284 TLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN 343

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G   P I T NS+ISAY   G +++  +  N+    G K D+ T   L   + RAG  + 
Sbjct: 344 G-FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVES 402

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             S+ + M+     P + T+N  I+ +G  G   +M + F ++   G+ P+ +T+ +L++
Sbjct: 403 AMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLA 462

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            + + G+  +V  + ++++ +  + +   FN +ISAY + G  E+   ++  M +    P
Sbjct: 463 VFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
           D  T+ T++ A    GM E ++ +  +M
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEM 550



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 163/337 (48%), Gaps = 3/337 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLGK  +   A+ +F  +  DG    V  YT+L+SA+  SG   EA +    M+    CK
Sbjct: 182 MLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE-DGCK 240

Query: 63  PDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY++++    K    ++ I  ++ +M   GI   A TYNT+I    +    +E   
Sbjct: 241 PTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQ 300

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M  +G  + D  T N+++  YG S   ++  K  NE  L G    I T N L  +Y
Sbjct: 301 VFEEMKAAGFSY-DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAY 359

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R GM D+   + + M ++   P V TY  ++  F +AG +E     F++M++ G KPN 
Sbjct: 360 ARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNI 419

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T+ + +  Y   G   ++  I  ++    +  D   +N +++ +GQ G   ++  +F  
Sbjct: 420 CTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKE 479

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           MK    VP+  TF T+I AY+  G  E A  +  +M+
Sbjct: 480 MKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRML 516



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 158/331 (47%), Gaps = 2/331 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  + +  L+SAY + G  ++A +    M     
Sbjct: 461 LAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG- 519

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+ TY+ ++ +  +   ++  EK+LAEM     + + +TY +++  Y   K+   M 
Sbjct: 520 VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMH 579

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S  +  V SG   P    L +++        + + E+ ++E    G   DI TLN +   
Sbjct: 580 S-LAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSI 638

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YGR  M  K   V+D+M++R F P++ TYN ++    ++    K EE  +++  +G+KP+
Sbjct: 639 YGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPD 698

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            I+Y +++ AY +   +     I  ++ NS ++ D   +N  I +Y      E+   +  
Sbjct: 699 IISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVR 758

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
            M +  C P+  T+ +++  Y  L   + A+
Sbjct: 759 YMIKHGCRPNQNTYNSIVDGYCKLNRKDEAK 789



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 138/315 (43%), Gaps = 2/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P +  +  L++ +GQ+G+  E      +MK      P+  T++ LI + ++   F+ 
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERETFNTLISAYSRCGSFEQ 507

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +   M   G+     TYNT++    +   +E+ E   + M E G C P+  T  S++
Sbjct: 508 AMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM-EDGRCKPNELTYCSLL 566

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AY N   I  M     E     ++     L  L     +  +  +       +++R F 
Sbjct: 567 HAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFS 626

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P + T N ++  +G+   + K       MK RG  P+  TY SL+  +S++    K + I
Sbjct: 627 PDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEI 686

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           LR++    +  D   +N +I AY +   +     +F  M+    VPD IT+ T I +Y A
Sbjct: 687 LREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAA 746

Query: 324 LGMTEAAQNLENKMI 338
             M E A  +   MI
Sbjct: 747 DSMFEEAIGVVRYMI 761



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 78/170 (45%), Gaps = 1/170 (0%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           D   + I+    G+ G      ++ + +Q+  F   V +Y  +I  F  +G   +    F
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVF 231

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIM-KVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           KKM+  G KP  ITY  +++ + K G    K+ S++ ++++  +  D   +N +I+   +
Sbjct: 232 KKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKR 291

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
               ++  ++F  MK      D +T+  ++  Y      + A  + N+M+
Sbjct: 292 GSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMV 341



 Score = 38.1 bits (87), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 6/135 (4%)

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           +   + + K+  ++ M  NS+    ++S   K G +    ++   ++     LD   +  
Sbjct: 155 LRAFDWFMKQKDYQSMLDNSVV-AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTS 213

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-----MTEAAQNLENK 336
           +ISA+  +G   +   +F  M+E  C P  IT+  ++  +  +G     +T   + +++ 
Sbjct: 214 LISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSD 273

Query: 337 MIAMKENSGKKLIQC 351
            IA    +   LI C
Sbjct: 274 GIAPDAYTYNTLITC 288


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 160/312 (51%), Gaps = 2/312 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +F  M   G  PS  VY A +    + G   +A      MK    C+P   TY++
Sbjct: 220 EKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKR-DRCQPSTATYTM 278

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  +  +  K+  EM     + +  T+  +++ + +    E+ E  F  + E+G
Sbjct: 279 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAG 338

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD++  N+++ AY  +G      + ++    MG + D  + NI+  +YGRAG+++  
Sbjct: 339 -LEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDA 397

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           ++V + M++    PT+ ++ +++  + +AG + K EE   +M   G+KP++    S+++ 
Sbjct: 398 QAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNL 457

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y + G   K++ +L  +E      D   +N +I+ YG+AG   +M ELF ++  R+ +PD
Sbjct: 458 YGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPD 517

Query: 311 NITFATMIQAYN 322
            +T+ + I AY+
Sbjct: 518 VVTWTSRIGAYS 529



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 153/342 (44%), Gaps = 37/342 (10%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
           ++      P V  Y  L+ AYGQ  L  +A ST  ++   + C P   TY++L+K+    
Sbjct: 158 ILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLE-ARCVPTEDTYALLLKAYCTS 216

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDG----------------------------- 109
              +  E + AEM   G   SAV YN  IDG                             
Sbjct: 217 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 276

Query: 110 ------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
                 YGKA K       F  M  S  C P+I T  ++++A+   G  EK E+ + +  
Sbjct: 277 TMLINLYGKASKSYMALKVFHEM-RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQ 335

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
             G++ D+   N L ++Y RAG       +   MQ     P   +YNI+++ +G+AG  E
Sbjct: 336 EAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHE 395

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
             +  F+ MK  G+ P   ++  L+SAYS+AG + K + I+ Q+  S +  DT   N ++
Sbjct: 396 DAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 455

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           + YG+ G  EKM E+   M++     D  T+  +I  Y   G
Sbjct: 456 NLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAG 497



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 157/300 (52%), Gaps = 2/300 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  +   A  +F  M S   KP++  +TALV+A+ + GL ++A      ++  +  +
Sbjct: 282 LYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE-AGLE 340

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDVY Y+ L+++ ++        +I + M ++G E    +YN ++D YG+A   E+ ++ 
Sbjct: 341 PDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAV 400

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  G  P + +   ++SAY  +G + K E+  N+ +  G+K D   LN +   YG
Sbjct: 401 FEVM-KRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYG 459

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G ++KM  V+  M+K  +   + TYNI+I  +G+AG   +MEE F+ +  R + P+ +
Sbjct: 460 RLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVV 519

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+ S + AYS+     +   +  ++ ++    D      ++SA      ++++  +  TM
Sbjct: 520 TWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTM 579



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 152/311 (48%), Gaps = 4/311 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +FE M  D  +PS   YT L++ YG++     A    ++M+S   CKP++ T++ 
Sbjct: 255 QKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRS-QKCKPNICTFTA 313

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +    +  E+I  ++   G+E     YN +++ Y +A  F    +   ++++  
Sbjct: 314 LVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG-FPYGAAEIFSLMQHM 372

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PD  + N M+ AYG +G  E  +  +     +G+   +++  +L  +Y RAG   K 
Sbjct: 373 GCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKC 432

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI-TYCSLVS 249
             +++ M K    P     N ++  +G+ G  EKMEE    M+ +G  P  I TY  L++
Sbjct: 433 EEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAME-KGPYPADISTYNILIN 491

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            Y +AG   +++ + R +   ++I D   +   I AY +     +  E+F  M +  C P
Sbjct: 492 IYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYP 551

Query: 310 DNITFATMIQA 320
           D  T   ++ A
Sbjct: 552 DGGTAKVLLSA 562



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 5/279 (1%)

Query: 57  SVSDCKPDVYTYSILIKSCTKFH---RFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGK 112
           S+    P+  T+  +I    +     ++D I  I   + Y        + YN +ID YG+
Sbjct: 121 SLDSLSPNHTTWDDIINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQ 180

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
              +++ ES++  ++E+  C P   T   ++ AY  SG +EK E  + E    G      
Sbjct: 181 KSLYKKAESTYLELLEAR-CVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAV 239

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
             N       + G   K   + + M++    P+  TY ++I  +GKA       + F +M
Sbjct: 240 VYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEM 299

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           + +  KPN  T+ +LV+A+++ GL  K + I  Q++ + +  D   +N ++ AY +AG  
Sbjct: 300 RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFP 359

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
               E+F  M+   C PD  ++  M+ AY   G+ E AQ
Sbjct: 360 YGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQ 398



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 2/195 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    E A  +FEVM   G+ P++  +  L+SAY ++G + +    +N M   S  KPD
Sbjct: 389 GRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHK-SGIKPD 447

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            +  + ++    +  +F+ +E++L  M          TYN +I+ YG+A  F  ME  F 
Sbjct: 448 TFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFR 507

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           ++  +    PD+ T  S I AY       +  + + E    G   D  T  +L  +    
Sbjct: 508 SL-PARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNG 566

Query: 185 GMYDKMRSVMDFMQK 199
               ++ +V+  M K
Sbjct: 567 DQIQEVTTVIRTMHK 581


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score =  150 bits (379), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 160/312 (51%), Gaps = 2/312 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +F  M   G  PS  VY A +    + G   +A      MK    C+P   TY++
Sbjct: 258 EKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKR-DRCQPSTATYTM 316

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  +  +  K+  EM     + +  T+  +++ + +    E+ E  F  + E+G
Sbjct: 317 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAG 376

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD++  N+++ AY  +G      + ++    MG + D  + NI+  +YGRAG+++  
Sbjct: 377 -LEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDA 435

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           ++V + M++    PT+ ++ +++  + +AG + K EE   +M   G+KP++    S+++ 
Sbjct: 436 QAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNL 495

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y + G   K++ +L  +E      D   +N +I+ YG+AG   +M ELF ++  R+ +PD
Sbjct: 496 YGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPD 555

Query: 311 NITFATMIQAYN 322
            +T+ + I AY+
Sbjct: 556 VVTWTSRIGAYS 567



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 153/342 (44%), Gaps = 37/342 (10%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
           ++      P V  Y  L+ AYGQ  L  +A ST  ++   + C P   TY++L+K+    
Sbjct: 196 ILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLE-ARCVPTEDTYALLLKAYCTS 254

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDG----------------------------- 109
              +  E + AEM   G   SAV YN  IDG                             
Sbjct: 255 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 314

Query: 110 ------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
                 YGKA K       F  M  S  C P+I T  ++++A+   G  EK E+ + +  
Sbjct: 315 TMLINLYGKASKSYMALKVFHEM-RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQ 373

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
             G++ D+   N L ++Y RAG       +   MQ     P   +YNI+++ +G+AG  E
Sbjct: 374 EAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHE 433

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
             +  F+ MK  G+ P   ++  L+SAYS+AG + K + I+ Q+  S +  DT   N ++
Sbjct: 434 DAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 493

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           + YG+ G  EKM E+   M++     D  T+  +I  Y   G
Sbjct: 494 NLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAG 535



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 157/300 (52%), Gaps = 2/300 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  +   A  +F  M S   KP++  +TALV+A+ + GL ++A      ++  +  +
Sbjct: 320 LYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE-AGLE 378

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDVY Y+ L+++ ++        +I + M ++G E    +YN ++D YG+A   E+ ++ 
Sbjct: 379 PDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAV 438

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  G  P + +   ++SAY  +G + K E+  N+ +  G+K D   LN +   YG
Sbjct: 439 FEVM-KRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYG 497

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G ++KM  V+  M+K  +   + TYNI+I  +G+AG   +MEE F+ +  R + P+ +
Sbjct: 498 RLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVV 557

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+ S + AYS+     +   +  ++ ++    D      ++SA      ++++  +  TM
Sbjct: 558 TWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTM 617



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 152/311 (48%), Gaps = 4/311 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +FE M  D  +PS   YT L++ YG++     A    ++M+S   CKP++ T++ 
Sbjct: 293 QKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRS-QKCKPNICTFTA 351

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +    +  E+I  ++   G+E     YN +++ Y +A  F    +   ++++  
Sbjct: 352 LVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG-FPYGAAEIFSLMQHM 410

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PD  + N M+ AYG +G  E  +  +     +G+   +++  +L  +Y RAG   K 
Sbjct: 411 GCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKC 470

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI-TYCSLVS 249
             +++ M K    P     N ++  +G+ G  EKMEE    M+ +G  P  I TY  L++
Sbjct: 471 EEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAME-KGPYPADISTYNILIN 529

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            Y +AG   +++ + R +   ++I D   +   I AY +     +  E+F  M +  C P
Sbjct: 530 IYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYP 589

Query: 310 DNITFATMIQA 320
           D  T   ++ A
Sbjct: 590 DGGTAKVLLSA 600



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 5/279 (1%)

Query: 57  SVSDCKPDVYTYSILIKSCTKFH---RFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGK 112
           S+    P+  T+  +I    +     ++D I  I   + Y        + YN +ID YG+
Sbjct: 159 SLDSLSPNHTTWDDIINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQ 218

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
              +++ ES++  ++E+  C P   T   ++ AY  SG +EK E  + E    G      
Sbjct: 219 KSLYKKAESTYLELLEAR-CVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAV 277

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
             N       + G   K   + + M++    P+  TY ++I  +GKA       + F +M
Sbjct: 278 VYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEM 337

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           + +  KPN  T+ +LV+A+++ GL  K + I  Q++ + +  D   +N ++ AY +AG  
Sbjct: 338 RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFP 397

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
               E+F  M+   C PD  ++  M+ AY   G+ E AQ
Sbjct: 398 YGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQ 436



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 2/195 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    E A  +FEVM   G+ P++  +  L+SAY ++G + +    +N M   S  KPD
Sbjct: 427 GRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHK-SGIKPD 485

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            +  + ++    +  +F+ +E++L  M          TYN +I+ YG+A  F  ME  F 
Sbjct: 486 TFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFR 545

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           ++  +    PD+ T  S I AY       +  + + E    G   D  T  +L  +    
Sbjct: 546 SL-PARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNG 604

Query: 185 GMYDKMRSVMDFMQK 199
               ++ +V+  M K
Sbjct: 605 DQIQEVTTVIRTMHK 619


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 160/312 (51%), Gaps = 2/312 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +F  M   G  PS  VY A +    + G   +A      MK    C+P   TY++
Sbjct: 150 EKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKR-DRCQPSTATYTM 208

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  +  +  K+  EM     + +  T+  +++ + +    E+ E  F  + E+G
Sbjct: 209 LINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAG 268

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD++  N+++ AY  +G      + ++    MG + D  + NI+  +YGRAG+++  
Sbjct: 269 -LEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDA 327

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           ++V + M++    PT+ ++ +++  + +AG + K EE   +M   G+KP++    S+++ 
Sbjct: 328 QAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNL 387

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y + G   K++ +L  +E      D   +N +I+ YG+AG   +M ELF ++  R+ +PD
Sbjct: 388 YGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPD 447

Query: 311 NITFATMIQAYN 322
            +T+ + I AY+
Sbjct: 448 VVTWTSRIGAYS 459



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 153/342 (44%), Gaps = 37/342 (10%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
           ++      P V  Y  L+ AYGQ  L  +A ST  ++   + C P   TY++L+K+    
Sbjct: 88  ILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLE-ARCVPTEDTYALLLKAYCTS 146

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDG----------------------------- 109
              +  E + AEM   G   SAV YN  IDG                             
Sbjct: 147 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 206

Query: 110 ------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
                 YGKA K       F  M  S  C P+I T  ++++A+   G  EK E+ + +  
Sbjct: 207 TMLINLYGKASKSYMALKVFHEM-RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQ 265

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
             G++ D+   N L ++Y RAG       +   MQ     P   +YNI+++ +G+AG  E
Sbjct: 266 EAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHE 325

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
             +  F+ MK  G+ P   ++  L+SAYS+AG + K + I+ Q+  S +  DT   N ++
Sbjct: 326 DAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 385

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           + YG+ G  EKM E+   M++     D  T+  +I  Y   G
Sbjct: 386 NLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAG 427



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 139/251 (55%), Gaps = 2/251 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  +   A  +F  M S   KP++  +TALV+A+ + GL ++A      ++  +  +
Sbjct: 212 LYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE-AGLE 270

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDVY Y+ L+++ ++        +I + M ++G E    +YN ++D YG+A   E+ ++ 
Sbjct: 271 PDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAV 330

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  G  P + +   ++SAY  +G + K E+  N+ +  G+K D   LN +   YG
Sbjct: 331 FEVM-KRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYG 389

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G ++KM  V+  M+K  +   + TYNI+I  +G+AG   +MEE F+ +  R + P+ +
Sbjct: 390 RLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVV 449

Query: 243 TYCSLVSAYSK 253
           T+ S + AYS+
Sbjct: 450 TWTSRIGAYSR 460



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 149/304 (49%), Gaps = 4/304 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +FE M  D  +PS   YT L++ YG++     A    ++M+S   CKP++ T++ 
Sbjct: 185 QKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRS-QKCKPNICTFTA 243

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +    +  E+I  ++   G+E     YN +++ Y +A  F    +   ++++  
Sbjct: 244 LVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAG-FPYGAAEIFSLMQHM 302

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PD  + N M+ AYG +G  E  +  +     +G+   +++  +L  +Y RAG   K 
Sbjct: 303 GCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKC 362

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI-TYCSLVS 249
             +++ M K    P     N ++  +G+ G  EKMEE    M+ +G  P  I TY  L++
Sbjct: 363 EEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAME-KGPYPADISTYNILIN 421

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            Y +AG   +++ + R +   ++I D   +   I AY +     +  E+F  M +  C P
Sbjct: 422 IYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYP 481

Query: 310 DNIT 313
           D  T
Sbjct: 482 DGGT 485



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 5/279 (1%)

Query: 57  SVSDCKPDVYTYSILIKSCTKFH---RFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGK 112
           S+    P+  T+  +I    +     ++D I  I   + Y        + YN +ID YG+
Sbjct: 51  SLDSLSPNHTTWDDIINVAVQLRLNKQWDAIVLICGWILYRSSFHPDVICYNLLIDAYGQ 110

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
              +++ ES++  ++E+  C P   T   ++ AY  SG +EK E  + E    G      
Sbjct: 111 KSLYKKAESTYLELLEAR-CVPTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAV 169

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
             N       + G   K   + + M++    P+  TY ++I  +GKA       + F +M
Sbjct: 170 VYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEM 229

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           + +  KPN  T+ +LV+A+++ GL  K + I  Q++ + +  D   +N ++ AY +AG  
Sbjct: 230 RSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFP 289

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
               E+F  M+   C PD  ++  M+ AY   G+ E AQ
Sbjct: 290 YGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQ 328


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 160/334 (47%), Gaps = 2/334 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            G+  Q + A  +F  M   G +P    Y  LV+A G++G + EA S  + M       P
Sbjct: 110 FGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLE-RGLTP 168

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY++L+ +  K  + D+   + AEM   G + S VTYN ++D    A +       F
Sbjct: 169 NIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLF 228

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M    GC PD +T +++++  G SG +E+  K + E    GV  D+   N L  +  +
Sbjct: 229 HKMT-GDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAK 287

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  D++  +M  M ++ F P   ++N +++  GKA   +   E F +M   G KP+ I+
Sbjct: 288 AGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLIS 347

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+ +Y++ G   +   +L ++  +  I +T  +N +I      G V++   +   M+
Sbjct: 348 YNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEME 407

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              C PD +T+  ++      G  + A  L  +M
Sbjct: 408 TAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQM 441



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 159/315 (50%), Gaps = 2/315 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + ++A   F+ ML  GL P++  Y  L+ A+ + G LD A     +MK     +P
Sbjct: 145 LGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKR-RGFQP 203

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V TY+IL+ +     R     K+  +M+  G    + TY+T+++G GK+ + EE    F
Sbjct: 204 SVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVF 263

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+ G    D+   NS+++    +GN++++ K   E +  G   D  + N +  + G+
Sbjct: 264 REMVDRG-VAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGK 322

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A   D  R V   M +    P +++YNI+I+++ + G   +  +  ++M   G  P + T
Sbjct: 323 ANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKT 382

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL+   +  G + +  ++L ++E +    D   +N ++   G+ G+ ++   LF  MK
Sbjct: 383 YNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMK 442

Query: 304 ERHCVPDNITFATMI 318
           ++   PD +++A  I
Sbjct: 443 DKGVEPDTLSYAVRI 457



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 162/323 (50%), Gaps = 2/323 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M+++G     +    L++AYG+     +AF   N  +S + C P V+ ++ LI   
Sbjct: 17  LLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFA-CSPTVHAFTKLIDIL 75

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                F+  E +  ++   G +     YN +I  +G++ + +     F  M +  G  PD
Sbjct: 76  VNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREM-KIKGSEPD 134

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            +T   +++A G +G +++   +++     G+  +I T N+L  ++ + G  D    +  
Sbjct: 135 EYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFA 194

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M++R F P+VVTYNI+++    AG +    + F KM   G  P+S TY +LV+   K+G
Sbjct: 195 EMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSG 254

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   + R++ +  V +D   +N +++   +AG+++++ +L   M  +   PD  +F 
Sbjct: 255 RVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFN 314

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
           T++ A       +AA+ +  +M+
Sbjct: 315 TIMDALGKANKPDAAREVFARMV 337



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 2/185 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M  LGK  +P+ A  +F  M+  G KP +  Y  L+ +Y + G   +A   + +M     
Sbjct: 317 MDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGF 376

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+  TY+ LI       + D    +L EM   G     VTYN ++D  GK  + +   
Sbjct: 377 I-PETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAA 435

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M +  G  PD  +    I        +++    + +   +G   D     IL ++
Sbjct: 436 RLFQQMKDK-GVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRA 494

Query: 181 YGRAG 185
             RAG
Sbjct: 495 AHRAG 499



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M MLGK  + ++A+ LF+ M   G++P    Y   +        LDEA     DMK+V  
Sbjct: 422 MDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVG- 480

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 97
           C  D   Y ILI++  +    +L  ++  E  ++ +E
Sbjct: 481 CPVDKAMYRILIRAAHRAGDTELEAQLKHESQFMPVE 517


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 167/338 (49%), Gaps = 5/338 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK  Q   A  +F       +  +V VY A++  Y ++G   +    ++ M+    C 
Sbjct: 224 VLGKANQEALAVEIF-ARAESSVGDTVQVYNAMMGVYARNGRFSKVKELLDLMRE-RGCV 281

Query: 63  PDVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           PD+ +++ LI +  K    +  L  ++L E+   GI    +TYNT+I    +    EE  
Sbjct: 282 PDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAV 341

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           + FS M ES  C PD++T N+MIS YG      K E+ + E    G   D  T N L  +
Sbjct: 342 AVFSDM-ESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYA 400

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + R G  +K+R + + M KR F    +TYN +I  +GK G  ++  + ++ MK  G  P+
Sbjct: 401 FSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPD 460

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           ++TY  L+ +  KA  + +  +++ ++ ++ V      ++ +I AY +AG  E+  E F 
Sbjct: 461 AVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFN 520

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            M+     PD + ++ M+  +      + A  L ++MI
Sbjct: 521 CMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMI 558



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 147/307 (47%), Gaps = 4/307 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE--AFSTINDMKSVSDCKPDVYTYSILIK 73
           L ++M   G  P +  +  L++A  +SG ++   A   +N+++  S  +PD+ TY+ LI 
Sbjct: 271 LLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRR-SGIRPDIITYNTLIS 329

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
           +C++    +    + ++M     +    TYN +I  YG+  +  + E  F  + ES G  
Sbjct: 330 ACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKEL-ESKGFF 388

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           PD  T NS++ A+   GN EK+     E    G   D  T N +   YG+ G +D+   +
Sbjct: 389 PDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQI 448

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
              M+     P  VTY ++I++ GKA  +E+      +M   G+KP   TY +L+ AY+K
Sbjct: 449 YRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAK 508

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           AG   + +     +  S +  D   ++ ++  + +  +++K   L+  M      PDN  
Sbjct: 509 AGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGL 568

Query: 314 FATMIQA 320
           +  M+ A
Sbjct: 569 YEVMMHA 575



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 147/345 (42%), Gaps = 37/345 (10%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSA-------------------------------- 38
            E+A  +F  M+ DG  P+VD    L+ A                                
Sbjct: 826  ERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLT 885

Query: 39   ---YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 95
               + Q+G L E     N MK+     P ++ Y I+++   K  R   +E +L EM   G
Sbjct: 886  LEAFAQAGNLFEVQKIYNGMKAAGYF-PTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAG 944

Query: 96   IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
             +      N+I+  Y   + F+ M   +   ++     PD  T N++I  Y      E+ 
Sbjct: 945  FQPDLQICNSILKLYLGIEDFKSMGIIYQK-IQDASLKPDEETYNTLIIMYCRDRRPEEG 1003

Query: 156  EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
                N+   +G++  + T   L  ++ +  MY++   + + ++   +      Y+++++T
Sbjct: 1004 FSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKT 1063

Query: 216  FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
            +  +G   K E     MK  G++P   T   L+ +Y K+G   + +++L+ +  + V+LD
Sbjct: 1064 YRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLD 1123

Query: 276  TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            T  ++ +I AY + GD +   E    MKE    PD+  +   I+A
Sbjct: 1124 TLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRA 1168



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 129/295 (43%), Gaps = 37/295 (12%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P  A  L   +   G++P +  Y  L+SA  +   L+EA +  +DM+S   C+PD++TY
Sbjct: 301 EPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMES-HRCQPDLWTY 359

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN------------------------ 104
           + +I    +  R    E++  E+   G    AVTYN                        
Sbjct: 360 NAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVK 419

Query: 105 -----------TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153
                      TII  YGK  + ++    +  M +S G +PD  T   +I + G +  +E
Sbjct: 420 RGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDM-KSSGRNPDAVTYTVLIDSLGKASKVE 478

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
           +     +E    GVK  + T + L  +Y +AG  ++     + M++    P  + Y++++
Sbjct: 479 EAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVML 538

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           + F +   ++K    + +M   G  P++  Y  ++ A  +  +   VD I+R +E
Sbjct: 539 DFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDME 593



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 143/329 (43%), Gaps = 2/329 (0%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            GK K  ++A  L   +     K    V+ AL+ AY  SG  + A +  N M       P 
Sbjct: 785  GKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMR-DGPSPT 843

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            V + + L+++     R + +  ++ E+  +G++ S  +    ++ + +A    E++  ++
Sbjct: 844  VDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYN 903

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             M ++ G  P +     M+        +  +E    E    G + D+Q  N + K Y   
Sbjct: 904  GM-KAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGI 962

Query: 185  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              +  M  +   +Q     P   TYN +I  + +    E+      KM+  G++P   TY
Sbjct: 963  EDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTY 1022

Query: 245  CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             SL++A++K  +  + + +  ++ ++   LD  F++ ++  Y  +GD  K   L   MKE
Sbjct: 1023 RSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKE 1082

Query: 305  RHCVPDNITFATMIQAYNALGMTEAAQNL 333
                P   T   ++ +Y   G  E A+N+
Sbjct: 1083 SGIEPTISTMHLLMVSYGKSGQPEEAENV 1111



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 34/241 (14%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           YN ++  Y +  +F +++     M E G C PD+ + N++I+A   SG +E         
Sbjct: 252 YNAMMGVYARNGRFSKVKELLDLMRERG-CVPDLVSFNTLINARMKSGAMEP-------- 302

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
           NL      +Q LN + +S  R                    P ++TYN +I    +  ++
Sbjct: 303 NLA-----LQLLNEVRRSGIR--------------------PDIITYNTLISACSRESNL 337

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           E+    F  M+    +P+  TY +++S Y +     K + + +++E+     D   +N +
Sbjct: 338 EEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSL 397

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
           + A+ + G+ EK+ ++   M +R    D +T+ T+I  Y   G  + A  +   M +   
Sbjct: 398 LYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGR 457

Query: 343 N 343
           N
Sbjct: 458 N 458



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 152/375 (40%), Gaps = 49/375 (13%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + E+A+ +   ML  G+KP++  Y+AL+ AY ++G  +EA  T N M+  S  KP
Sbjct: 471 LGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRR-SGIKP 529

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   YS+++    +F+       +  EM   G       Y  ++    +   ++ ++   
Sbjct: 530 DRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRII 589

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK-----WYN------------------ 160
             M E  G +P +  ++S++   G   +  KM K      Y                   
Sbjct: 590 RDMEELSGMNPQV--ISSVLVKGGCYDHAAKMLKVAISNGYELDHEIFLSIMSSYSSSAR 647

Query: 161 --------EFNLMGVKADIQTLN-----ILTKSYGRAGMYDKMRSVMDFMQKR--FFFPT 205
                   EF+      DIQ +      IL K+       ++ RS  +  Q R    + +
Sbjct: 648 YSEACELLEFSREHAPNDIQMITEALIIILCKAKKLDAALEEYRSKGELGQFRSCTMYES 707

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           ++   I  E F  A  I      F  M+  G++ +   Y  +VS Y +  L      +L 
Sbjct: 708 LIQECIQNELFDVASQI------FSDMRFNGVESSECLYQGMVSVYCRMDLPETAHHLLY 761

Query: 266 QVENSDVILDTPF--FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             E + +ILD     +  I+  YG+    +K   L  ++++R    D   +  +I AY  
Sbjct: 762 HAEKNGIILDNDISVYIDIVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAF 821

Query: 324 LGMTEAAQNLENKMI 338
            G  E A+ + N M+
Sbjct: 822 SGCYERARAIFNTMM 836



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 121/310 (39%), Gaps = 38/310 (12%)

Query: 68   YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
            Y  LI+ C +   FD+  +I ++M + G+E S   Y  ++  Y +     E         
Sbjct: 705  YESLIQECIQNELFDVASQIFSDMRFNGVESSECLYQGMVSVYCRMD-LPETAHHLLYHA 763

Query: 128  ESGG--CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
            E  G     DI     ++  YG     +K E           K D +  N L  +Y  +G
Sbjct: 764  EKNGIILDNDISVYIDIVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSG 823

Query: 186  MYDKMRSVMDFMQKRFFFPTVVTYN----------------------------------- 210
             Y++ R++ + M +    PTV + N                                   
Sbjct: 824  CYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSIL 883

Query: 211  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            + +E F +AG++ ++++ +  MK  G  P    Y  ++    K   +  V+++L ++E +
Sbjct: 884  LTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEA 943

Query: 271  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
                D    N I+  Y    D + MG ++  +++    PD  T+ T+I  Y      E  
Sbjct: 944  GFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEG 1003

Query: 331  QNLENKMIAM 340
             +L NKM ++
Sbjct: 1004 FSLMNKMRSL 1013



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 2/170 (1%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            ++M  + ++PE+   L   M S GL+P +D Y +L++A+ +  + ++A     +++S + 
Sbjct: 991  IIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRS-NG 1049

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             K D   Y +++K+          E +LA M   GIE +  T + ++  YGK+ + EE E
Sbjct: 1050 YKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAE 1109

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
            +    +  + G   D    +S+I AY   G+ +   +   E    G++ D
Sbjct: 1110 NVLKNL-RTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPD 1158


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 39/345 (11%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
           V+     +P +  Y  L+ AYGQ   L EA +    +   + C P   TY++L+++    
Sbjct: 162 VLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLE-ARCVPTEDTYALLLRAYCGS 220

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------ 126
            +    E +++EM   GI  +A  YN  +DG  KA+  E+    +  M            
Sbjct: 221 GQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETY 280

Query: 127 ----------------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
                                 ++S GC P+I T  ++++A+   G  EK E+ + E   
Sbjct: 281 TLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 340

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G + D+   N L ++Y RAG+      +   M+     P   +YNI+++ FG+AG  ++
Sbjct: 341 AGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQE 400

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
            E  F+++K +GM+P   ++  L+SA++++G + + + ++ Q+  S +  DT   N +++
Sbjct: 401 AEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLN 460

Query: 285 AYGQAGDVEKMGELFLTMKERH----CVPDNITFATMIQAYNALG 325
           AYG+AG ++ M  LF  M+         PD  T+  M+ AY   G
Sbjct: 461 AYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAG 505



 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 159/302 (52%), Gaps = 6/302 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  QP  +  +F  M S G KP++  YTALV+A+ + GL ++A     +M+     +PD
Sbjct: 288 GKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPD 346

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VY Y+ L+++ ++        +I + M ++G E    +YN ++D +G+A   +E E++F 
Sbjct: 347 VYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQ 406

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + + G   P + +   ++SA+  SGN+ + E+   + +  G++ D   LN +  +YGRA
Sbjct: 407 ELKQQG-MRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRA 465

Query: 185 GMYDKMRSVMDFMQKR----FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           G  D M  +   M++        P   TYN+++  +G+AG++++ME  F+ +  RG+  +
Sbjct: 466 GRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAAD 525

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T+ S + AY++     +   +  ++ ++    D      +++A      VE++  +  
Sbjct: 526 VVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVKAIVR 585

Query: 301 TM 302
           +M
Sbjct: 586 SM 587



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 164/317 (51%), Gaps = 6/317 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q  +A  +   M  +G+ P+  VY A +    ++   ++A      MK    C+ +  TY
Sbjct: 222 QLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKK-ERCRTNTETY 280

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +++I    K ++     ++  EM  +G + +  TY  +++ + +    E+ E  F  M +
Sbjct: 281 TLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 340

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           +G   PD++  N+++ AY  +G  +   + ++    MG + D  + NIL  ++GRAG++ 
Sbjct: 341 AGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQ 399

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +  +    ++++   PT+ ++ +++    ++G++ + EE   ++   G++P++    +++
Sbjct: 400 EAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAML 459

Query: 249 SAYSKAGLIMKVDSILRQVENSDVIL----DTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           +AY +AG +  ++ +   +E  D  +    DT  +N +++AYG+AG +++M   F ++  
Sbjct: 460 NAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSLAA 519

Query: 305 RHCVPDNITFATMIQAY 321
           R    D +T+ + I AY
Sbjct: 520 RGLAADVVTWTSRIGAY 536



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 156/322 (48%), Gaps = 8/322 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  E+A  +++ M  +  + + + YT +++ YG++     +     +MKSV  CKP
Sbjct: 252 LLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVG-CKP 310

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A   +     F
Sbjct: 311 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 370

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M E  GC PD  + N ++ A+G +G  ++ E  + E    G++  +++  +L  ++ R
Sbjct: 371 SLM-EHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAR 429

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-----MK 238
           +G   +   VM  + K    P     N ++  +G+AG ++ ME  F  M+ RG       
Sbjct: 430 SGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAME-RGDGAIAGA 488

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++ TY  +V+AY +AG + ++++  R +    +  D   +   I AY +  +  +   +
Sbjct: 489 PDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRV 548

Query: 299 FLTMKERHCVPDNITFATMIQA 320
           F  M +  C PD  T   ++ A
Sbjct: 549 FEEMVDAGCYPDAGTAKVLLAA 570


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 168/347 (48%), Gaps = 38/347 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYS 69
            +A ++F+ M   G KP++  Y  +++ YG+ G+  ++    ++ MKS +   PD YTY+
Sbjct: 217 REAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKS-AGIAPDSYTYN 275

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            LI  C + + ++    +L EM   G     VTYN ++D YGK+++ +E       M E 
Sbjct: 276 TLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEM-EG 334

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD------------------- 170
            GC P I T NS+ISAY   G +E   +  N+    G+K D                   
Sbjct: 335 NGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKA 394

Query: 171 ----------------IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
                           I T N L K +G  G + +M  V + ++     P +VT+N ++ 
Sbjct: 395 AVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLS 454

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            FG+ G   ++   FK+MK  G  P   T+ +L+S+YS+ G   +  ++ +++  + V  
Sbjct: 455 VFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNP 514

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           D   +N +++A  + G  ++  ++   MK+  C P+ +T+ +++ AY
Sbjct: 515 DLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAY 561



 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 157/329 (47%), Gaps = 2/329 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++ ++A  + + M  +G  PS+  Y +L+SAY + GLL++A    N M      KPD
Sbjct: 317 GKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVE-KGIKPD 375

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V+TY+ L+    K  +     +I  EM   G + +  T+N +I  +G   KF EM   F 
Sbjct: 376 VFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFE 435

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +++  C PDI T N+++S +G +G   ++   + E    G   +  T N L  SY R 
Sbjct: 436 D-IKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRC 494

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G +D+  +V   M +    P + +YN V+    + G  ++ E+   +MK    KPN +TY
Sbjct: 495 GSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTY 554

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           CSL+ AY+    I ++ ++  ++ +  +         ++    +   + +    FL +++
Sbjct: 555 CSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQ 614

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNL 333
           R   PD  T   M+  Y    M   A  +
Sbjct: 615 RGFSPDITTLNAMVSIYGRRQMVAKANEI 643



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 160/337 (47%), Gaps = 2/337 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  D +  L+S+Y + G  D+A +    M   + 
Sbjct: 453 LSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLE-AG 511

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+ +Y+ ++ +  +   +   EK+LAEM     + + +TY +++  Y   K+ E M 
Sbjct: 512 VNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERM- 570

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            + +  + SG   P    L +++        + + E+ + E    G   DI TLN +   
Sbjct: 571 CALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSI 630

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YGR  M  K   ++D M++  F P++ TYN ++  + ++ + E+ EE  +++  +G++P+
Sbjct: 631 YGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPD 690

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            I+Y +++ AY + G +     +L ++  S    D   +N  I++Y       +  ++  
Sbjct: 691 IISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVC 750

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M +  C P+  T+ +++  Y  L   + A    N +
Sbjct: 751 YMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNL 787



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 139/300 (46%), Gaps = 9/300 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP----DVYTYSILIKSCTKFHRFDLIEK 86
           +   ++S  G+ G +  A S ++++     CK     DVY Y+ +I + T   R+     
Sbjct: 167 IIAVIISILGKGGRVSAAASLLHNL-----CKDGFDVDVYAYTSMITAFTSNGRYREAVM 221

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  +M  +G + + +TYN I++ YGK              ++S G  PD +T N++IS  
Sbjct: 222 VFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCC 281

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
                 E+      E  L G   D  T N L   YG++    +   V+  M+     P++
Sbjct: 282 RRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCPPSI 341

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VTYN +I  + + G +E   E   +M  +G+KP+  TY +L+S + KAG       I  +
Sbjct: 342 VTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEE 401

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + N     +   FN +I  +G  G   +M ++F  +K   C PD +T+ T++  +   GM
Sbjct: 402 MRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGM 461


>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 399

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 159/298 (53%), Gaps = 3/298 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK KQP  A  +F+ M S G K ++  YTALV+A+ + GL ++A     +M+     +PD
Sbjct: 95  GKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPD 153

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VY Y+ L+++ ++        +I + M ++G E    +YN ++D YG+A    E E+ F 
Sbjct: 154 VYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFE 213

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           ++ +  G  P + +   +++A+  SGN+ + E+   + +  G+  D   LN +  +YGRA
Sbjct: 214 SL-KRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRA 272

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D M  ++  M++R     V TYN+ +  +G+AG++E+ME  F  ++ RG+  + +T+
Sbjct: 273 GRLDDMERLLAAMERRGT-RDVGTYNVAVNAYGRAGYLERMEAAFASLERRGLAADVVTW 331

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            S + AY++     +   I  ++ ++    D      +++A      VE++  +  +M
Sbjct: 332 TSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVLVAACSDERQVEQVTAIVRSM 389



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 158/302 (52%), Gaps = 3/302 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G+ PS  VY A +    ++   ++A      MK    C+ +  TY+++I    K  
Sbjct: 40  MREHGIPPSATVYNAYLDGLLKARCAEKAVEVYQRMKR-ERCRTNTETYTLMINVYGKSK 98

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +     K+  EM  +G + +  TY  +++ + +    E+ E  F  M ++G   PD++  
Sbjct: 99  QPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAY 157

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N+++ AY  +G  +   + ++    MG + D  + NIL  +YGRAG++ +  +V + +++
Sbjct: 158 NALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKR 217

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           +   PT+ ++ +++    ++G++ + EE   ++   G+ P++I   ++++AY +AG +  
Sbjct: 218 QGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDD 277

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           ++ +L  +E      D   +N  ++AYG+AG +E+M   F +++ R    D +T+ + + 
Sbjct: 278 MERLLAAMERRGT-RDVGTYNVAVNAYGRAGYLERMEAAFASLERRGLAADVVTWTSRMG 336

Query: 320 AY 321
           AY
Sbjct: 337 AY 338



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 156/328 (47%), Gaps = 7/328 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++  +L     P+ D Y  L+ AY  +G L  A   I++M+      P    Y+  +   
Sbjct: 1   MYAALLEARCVPTEDTYALLLRAYCTAGSLHRAEGVISEMRE-HGIPPSATVYNAYLDGL 59

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K    +   ++   M       +  TY  +I+ YGK+K+       F  M +S GC  +
Sbjct: 60  LKARCAEKAVEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEM-QSIGCKAN 118

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I T  ++++A+   G  EK E+ + E    G + D+   N L ++Y RAG       +  
Sbjct: 119 ICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFS 178

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            MQ     P   +YNI+++ +G+AG   + E  F+ +K +GM P   ++  L++A++++G
Sbjct: 179 LMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSG 238

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + + + ++ Q+  S +  DT   N +++AYG+AG ++ M  L   M ER    D  T+ 
Sbjct: 239 NVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAM-ERRGTRDVGTYN 297

Query: 316 TMIQAYNALG----MTEAAQNLENKMIA 339
             + AY   G    M  A  +LE + +A
Sbjct: 298 VAVNAYGRAGYLERMEAAFASLERRGLA 325



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 153/317 (48%), Gaps = 3/317 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  E+A  +++ M  +  + + + YT +++ YG+S     A     +M+S+  CK 
Sbjct: 59  LLKARCAEKAVEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIG-CKA 117

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A  F +  S  
Sbjct: 118 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAG-FPQAASEI 176

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            ++++  GC PD  + N ++ AYG +G   + E  +      G+   +++  +L  ++ R
Sbjct: 177 FSLMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHAR 236

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G   +   VM  + K    P  +  N ++  +G+AG ++ ME     M+ RG + +  T
Sbjct: 237 SGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRGTR-DVGT 295

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y   V+AY +AG + ++++    +E   +  D   +   + AY +  +  +  E+F  M 
Sbjct: 296 YNVAVNAYGRAGYLERMEAAFASLERRGLAADVVTWTSRMGAYARKKEYRRCLEIFEEMV 355

Query: 304 ERHCVPDNITFATMIQA 320
           +  C PD  T   ++ A
Sbjct: 356 DAGCYPDAGTAKVLVAA 372


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 158/299 (52%), Gaps = 2/299 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M +DG  P V  +T L+ A  + G +DEAF T++ MK      P+++TY+ LI    + +
Sbjct: 358 MEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKK-QGVAPNLHTYNTLICGLLRLN 416

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R D   ++   M  LG+E +A TY   ID YGK+ +  +   +F  M ++ G  P+I   
Sbjct: 417 RLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKM-KTNGIVPNIVAC 475

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N+ + +    G +E+ ++++N     G+  D  T NIL + YG+AG  D    ++  M++
Sbjct: 476 NASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEE 535

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P VV  N +I+T  KA  +++  + F++MK   + P  +TY +L++   K G + +
Sbjct: 536 NGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQE 595

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             ++ + +   D   +T  FN ++    + G+V+   ++   M E +C PD +T+ T+I
Sbjct: 596 ATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVI 654



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 164/374 (43%), Gaps = 37/374 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV LGK +  E    L + M S GL+P++  +T  +   G++G +DEA+  +  M   + 
Sbjct: 234 MVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDD-AG 292

Query: 61  CKPDVYTYSILIKSC-----------------------------TKFHRF------DLIE 85
           C PDV TY++LI +                              T   +F      D I+
Sbjct: 293 CGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIK 352

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           +  +EM   G     VT+  +ID   K  K +E   +   M +  G  P++ T N++I  
Sbjct: 353 EFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVM-KKQGVAPNLHTYNTLICG 411

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
                 +++  + +N    +G++    T  +    YG++G   K     + M+     P 
Sbjct: 412 LLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPN 471

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           +V  N  + +  + G +E+ +E+F  +K  G+ P++ITY  L+  Y KAG +     +L 
Sbjct: 472 IVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLS 531

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++E +    +    N +I    +A  V++  ++F  MKE    P  +T+ T++      G
Sbjct: 532 EMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEG 591

Query: 326 MTEAAQNLENKMIA 339
             + A  L   MIA
Sbjct: 592 RVQEATALFKGMIA 605



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 147/314 (46%), Gaps = 2/314 (0%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K +  E A  LF  M + G  P V  Y   + A G+SG + E F    +M     CKP
Sbjct: 798  LLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEM-LFRGCKP 856

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            +  T++I+I    K +  D    +  ++       +  TY  +IDG  K  + EE +  F
Sbjct: 857  NTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFF 916

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              M++ G C P+    N +++ +G  G++E   + +      G++ D+++ +I+      
Sbjct: 917  EEMLDYG-CMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCM 975

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
             G  D      + ++     P +V YN++I   G++  +E+    F +M++RG+ P+  T
Sbjct: 976  VGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYT 1035

Query: 244  YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
            Y +L+     AG++ +   +  +++   +  +   +N +I  +  +G+ ++   ++  M 
Sbjct: 1036 YNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMM 1095

Query: 304  ERHCVPDNITFATM 317
               C P+  TFA +
Sbjct: 1096 VGGCRPNTGTFAQL 1109



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 158/323 (48%), Gaps = 4/323 (1%)

Query: 25   LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
            + PS++ Y +L+    ++ L + A+     MK+ + C PDV+TY++ + +  K  +   +
Sbjct: 784  ITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKN-AGCTPDVFTYNLFLDALGKSGKIKEL 842

Query: 85   EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
              +  EM + G + + +T+N +I G  K+   ++    +  ++ SG   P  +T   +I 
Sbjct: 843  FDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLM-SGDFSPTPWTYGPLID 901

Query: 145  AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
                 G +E+ ++++ E    G   +    NIL   +G+ G  +    +   M K    P
Sbjct: 902  GLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRP 961

Query: 205  TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
             + +Y+I+++     G ++    YF+++K  G+ P+ + Y  +++   ++  + +  S+ 
Sbjct: 962  DLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLF 1021

Query: 265  RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             ++ N  +  D   +N +I   G AG VE+ G+++  ++ +   P+  T+  +I+ ++  
Sbjct: 1022 DEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMS 1081

Query: 325  GMTEAAQNLENKMI--AMKENSG 345
            G  + A  +  KM+    + N+G
Sbjct: 1082 GNPDRAYAVYKKMMVGGCRPNTG 1104



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 150/362 (41%), Gaps = 37/362 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A +  E M   G   +   Y  L+    +SG   EA      M S    KP + TYS 
Sbjct: 174 REAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVS-EGIKPSLKTYSA 232

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  K    + +  +L EM  LG+  +  T+   I   G+A K +E       M +  
Sbjct: 233 LMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRM-DDA 291

Query: 131 GCHPDIFTLNSMISAYGNS-----------------------------------GNIEKM 155
           GC PD+ T   +I A  N+                                   G+++ +
Sbjct: 292 GCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAI 351

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           +++++E    G   D+ T  IL  +  + G  D+    +D M+K+   P + TYN +I  
Sbjct: 352 KEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICG 411

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             +   +++  E F  M+  G++  + TY   +  Y K+G   K      +++ + ++ +
Sbjct: 412 LLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPN 471

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
               N  + +  + G +E+  E F  +K+    PD IT+  +++ Y   G  + A  L +
Sbjct: 472 IVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLS 531

Query: 336 KM 337
           +M
Sbjct: 532 EM 533



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 156/398 (39%), Gaps = 73/398 (18%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + ++A+ LF+ M++D   P+   +  L+    ++G +D A   +  M  + +C P
Sbjct: 587 LGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEM-NCFP 645

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TY+ +I    K +R +    +  +M  + I    VT  T++ G  K  + E+     
Sbjct: 646 DVLTYNTVIYGLIKENRVNYAFWLFHQMKKV-IYPDYVTLCTLLPGVIKDGRIEDAFRVA 704

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD------------- 170
              V   G H D      ++        I +   +        +  D             
Sbjct: 705 KEFVHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCK 764

Query: 171 ----IQTLNI---LTKSYGRAGMYDKMRSVMDFMQKR--------FFF--------PTVV 207
               +   N+   LTKS+      +   S++D + K          F+        P V 
Sbjct: 765 HGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVF 824

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI------------------------- 242
           TYN+ ++  GK+G I+++ + +++M  RG KPN+I                         
Sbjct: 825 TYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDL 884

Query: 243 ----------TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
                     TY  L+    K G + +      ++ +   + + P +N +++ +G+ GDV
Sbjct: 885 MSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDV 944

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           E   ELF  M +    PD  +++ M+     +G  + A
Sbjct: 945 ETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDA 982



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 70/136 (51%)

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P++ TY+ ++   GK   IE +    ++M+  G++PN  T+   +    +AG I +   I
Sbjct: 225 PSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGI 284

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L++++++    D   +  +I A   AG +    ELFL MK     PD +T+ T++  ++ 
Sbjct: 285 LKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSD 344

Query: 324 LGMTEAAQNLENKMIA 339
            G  +A +   ++M A
Sbjct: 345 HGDLDAIKEFWSEMEA 360



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 5/182 (2%)

Query: 162 FNLMG---VKADIQT-LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
           FNLM    +K  I T L I    Y R G+ +     ++ M+K  F     +Y  +I    
Sbjct: 145 FNLMQKQIIKRSINTYLTIFKVLYIRGGLREA-PVALEKMRKVGFVLNGYSYIGLIHLLL 203

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           K+G   +  + +++M   G+KP+  TY +L+ A  K   I  V  +L+++E+  +  +  
Sbjct: 204 KSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIY 263

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            F   I   G+AG +++   +   M +  C PD +T+  +I A    G    A+ L  KM
Sbjct: 264 TFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKM 323

Query: 338 IA 339
            A
Sbjct: 324 KA 325


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 175/357 (49%), Gaps = 34/357 (9%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 74
           L+++ ML     P    +  L+ +  ++  ++EA +   DM  + +  PDVYTY+ILI+S
Sbjct: 86  LMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKL-NVSPDVYTYTILIRS 144

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
                R D + K+   M+  G + +  TY++++  +G A + +E    F  MV+ G   P
Sbjct: 145 LGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKG-LQP 203

Query: 135 DIFTLNSMISAYGNSGNIEKM------------EKWYNEF-NLMGVKADIQ--------- 172
           D  T N +I A+G +G +E+             E  YN   + +G K DIQ         
Sbjct: 204 DAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQM 263

Query: 173 ----------TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
                     T  IL +  G AG  + +  +   M        +VT N V++   KAG +
Sbjct: 264 KAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRV 323

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           E   E F+ MK +G+  +++TY  L++   +AG +    ++L ++E +    +   +N +
Sbjct: 324 EAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTL 383

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           IS+YG+  ++     LFL MKER   P+ ++++++I+ +   G T+AA +L  +M A
Sbjct: 384 ISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKA 440



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 170/378 (44%), Gaps = 43/378 (11%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +LG  ++ +    L E M  D  K    ++  L+  YG++ ++++A  T+    +   
Sbjct: 2   LTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAF-TKEG 60

Query: 61  CKPDVYTYS-----------------------------------ILIKSCTKFHRFDLIE 85
            +P  YTYS                                   ILI S  K  + +   
Sbjct: 61  GRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEAC 120

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +  +M  L +     TY  +I   G   + + +   F +M  + GC P++FT +S++ A
Sbjct: 121 NVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMT-AQGCQPNLFTYHSVMHA 179

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           +G++G +++    + +    G++ D  T NIL  ++G+ G   ++    DF+ K   F  
Sbjct: 180 FGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTG---QLERAFDFVGKSRSFTN 236

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
            VTYN ++ + G+ G I+ + E F +MK +G+  N +TY  L+     AG +  V  +  
Sbjct: 237 EVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYL 296

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++ ++D+  D    N ++    +AG VE   ELF  MK +    D +T+  +I      G
Sbjct: 297 EMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAG 356

Query: 326 MTEAAQNLENKMIAMKEN 343
             +AA  L   ++ M+EN
Sbjct: 357 KLDAAGAL---LLEMEEN 371



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 157/319 (49%), Gaps = 5/319 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M   G   + ++A  +F+ M+  GL+P    Y  L+ A+G++G L+ AF  +   +S ++
Sbjct: 177 MHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTN 236

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
                 TY+ L+ S  +      + ++  +M   G+  + +TY  +I+  G A + E++ 
Sbjct: 237 ----EVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVW 292

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +  MV++     DI T+N+++     +G +E   + + +    G+ AD  T NIL   
Sbjct: 293 QLYLEMVDND-IKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILING 351

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            GRAG  D   +++  M++    P ++TYN +I ++GK  ++      F +MK RG+ PN
Sbjct: 352 LGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPN 411

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ++Y SL+  + KAG      S+ R+++      +   +N +I    +AG      E   
Sbjct: 412 VVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLR 471

Query: 301 TMKERHCVPDNITFATMIQ 319
            M++  C    +T + +++
Sbjct: 472 EMRDAGCQMGKVTKSLLVR 490



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 91/197 (46%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           M++  G +   + +++          K D Q  N L   YG A M +K    +    K  
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEG 60

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             PT  TY+ +I+ F K G ++     +K+M      P+  T+  L+ + +KA  + +  
Sbjct: 61  GRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEAC 120

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           ++   +   +V  D   +  +I + G  G ++ + +LF +M  + C P+  T+ +++ A+
Sbjct: 121 NVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAF 180

Query: 322 NALGMTEAAQNLENKMI 338
            + G  + A ++  +M+
Sbjct: 181 GSAGRVDEACDIFQQMV 197


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 167/346 (48%), Gaps = 36/346 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A ++F+ M  +G KP++  Y  +++ YG+ G+     + + +    +   PD YTY+ 
Sbjct: 50  REAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNT 109

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI  C +   ++    +  +M  +G     VTYNT++D YGK+++ +E       M E  
Sbjct: 110 LITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREM-EVN 168

Query: 131 GCHPDIFTLNSMISAYGNSGNIEK-ME--------------------------------- 156
           GC P I T NS+ISAY   G +E+ ME                                 
Sbjct: 169 GCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESA 228

Query: 157 -KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            + + E    G K +I T N L K +G  G + +M  V + ++     P +VT+N ++  
Sbjct: 229 MRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAV 288

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           FG+ G   ++   FK+MK  G  P   TY +L+SAYS+ G   +  ++ +++ ++ +  D
Sbjct: 289 FGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPD 348

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
              +N +++A  + G  E+  ++   M++  C P+ +T  +++ AY
Sbjct: 349 LSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAY 394



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 155/333 (46%), Gaps = 2/333 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++ ++A  +   M  +G  PS+  Y +L+SAY + GLL+EA    N M      K D
Sbjct: 150 GKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVE-RGIKLD 208

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V+TY+ ++    +  + +   ++  EM   G + +  T+N +I  +G   KF EM   F 
Sbjct: 209 VFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFE 268

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             ++   C PDI T N++++ +G +G   ++   + E   +G   +  T N L  +Y R 
Sbjct: 269 E-IKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRC 327

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G +D+  ++   M      P + TYN V+    + G  E+ E+   +M+    KPN +T+
Sbjct: 328 GSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTH 387

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           CSL+ AY+    I ++ ++  ++ +  +         ++    +   + +    FL +K 
Sbjct: 388 CSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKR 447

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +   PD  T   MI  Y    M      + N M
Sbjct: 448 KGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFM 480



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 161/330 (48%), Gaps = 2/330 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  D Y  L+SAY + G  D+A +    M   + 
Sbjct: 286 LAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLD-TG 344

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+ TY+ ++ +  +   ++  EKILAEM     + + +T+ +++  Y   K+   M 
Sbjct: 345 ITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRM- 403

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            + +  + SG   P    L +++        + + E+ + E    G   D+ TLN +   
Sbjct: 404 LALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAI 463

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YGR  M  K   +++FM++  F P++ TYN ++    ++ + E+ EE  K++  +G+KP+
Sbjct: 464 YGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPD 523

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            I+Y +++ AY + G + +   I  ++  S +I D   +N  +++Y      E+  ++  
Sbjct: 524 IISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVC 583

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAA 330
            M +  C P+  T+ ++I  Y  L   + A
Sbjct: 584 YMIKHGCKPNQNTYNSVIDGYCKLNRRDDA 613



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 160/337 (47%), Gaps = 3/337 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLGK  +   A+ L   +  DG +P V  YT+L++A   +G   EA      M+    CK
Sbjct: 7   MLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEE-EGCK 65

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY++++    K    ++ I  +   M   GI     TYNT+I    +   +EE  +
Sbjct: 66  PTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAA 125

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M +S G  PD  T N+++  YG S  I++  +   E  + G    I T N L  +Y
Sbjct: 126 VFEDM-KSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAY 184

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R G+ ++   + + M +R     V TY  ++  F + G  E     F++M+  G KPN 
Sbjct: 185 ARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNI 244

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T+ +L+  +   G   ++  +  +++    + D   +N +++ +GQ G   ++  +F  
Sbjct: 245 CTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKE 304

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           MK    VP+  T+ T+I AY+  G  + A  +  +M+
Sbjct: 305 MKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRML 341



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 97/198 (48%), Gaps = 1/198 (0%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I+  G  G +       N  +  G + D+     L  +    G Y +   V   M++  
Sbjct: 4   IINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEG 63

Query: 202 FFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
             PT++TYN+++  +GK G    K+   F+ MK+ G+ P+  TY +L++   +  L  + 
Sbjct: 64  CKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEA 123

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            ++   +++   + D   +N ++  YG++  +++  E+   M+   C P  +T+ ++I A
Sbjct: 124 AAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISA 183

Query: 321 YNALGMTEAAQNLENKMI 338
           Y   G+ E A  L+N+M+
Sbjct: 184 YARDGLLEEAMELKNQMV 201



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 1/147 (0%)

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
           ++    G+ G      S+++ + K  F P V  Y  +I      G   +    FKKM+  
Sbjct: 3   VIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 236 GMKPNSITYCSLVSAYSKAGLIM-KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           G KP  ITY  +++ Y K G+   K+  +   ++N+ ++ D   +N +I+   +    E+
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEE 122

Query: 295 MGELFLTMKERHCVPDNITFATMIQAY 321
              +F  MK    VPD +T+ T++  Y
Sbjct: 123 AAAVFEDMKSMGFVPDKVTYNTLLDVY 149



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M M  + +  E++  + + +L+ G+KP +  Y  ++ AY ++G + EA    ++M+  S 
Sbjct: 496 MYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRE-SG 554

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PDV TY+  + S      F+    ++  M   G + +  TYN++IDGY K  + ++  
Sbjct: 555 LIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAI 614

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
              S++ E          L+  IS       +E++ KW
Sbjct: 615 KFISSLHE----------LDPHISREDECRLLERLTKW 642



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 1/131 (0%)

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           ++I   GK G +         +   G +P+   Y SL++A    G   +   + +++E  
Sbjct: 3   VIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE 62

Query: 271 DVILDTPFFNCIISAYGQAG-DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
                   +N I++ YG+ G    K+  LF  MK    +PD  T+ T+I       + E 
Sbjct: 63  GCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEE 122

Query: 330 AQNLENKMIAM 340
           A  +   M +M
Sbjct: 123 AAAVFEDMKSM 133


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 167/328 (50%), Gaps = 2/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A+     M   GL P   +YT ++  + ++GL+ EA    ++M +   C PDV TY+ 
Sbjct: 316 DHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFG-CLPDVVTYNT 374

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  R    E++L EM   G+     T+ T+I GY +    E+    F  + +  
Sbjct: 375 LLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQR 434

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PDI T N++I      G++ K  + +++ +   +  +  T +IL  S+   G  D  
Sbjct: 435 -LRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNA 493

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            + +D M  +   P ++TYN +I+ + ++G++ K +++  KM+H  + P+ ITY +L+  
Sbjct: 494 FAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHG 553

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K G + +  ++L+ +EN +V  D   +N IIS +   G++++   ++  M  R   PD
Sbjct: 554 YVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPD 613

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
             T+ +MI  +   G ++ +  L ++M+
Sbjct: 614 RYTYMSMINGHVVAGNSKKSFQLHDEML 641



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 166/364 (45%), Gaps = 37/364 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F  M + G+ P V  +  L+  + ++G L+EA     +M+      PDV ++S 
Sbjct: 246 DKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRG-RRVTPDVVSFSC 304

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIE-------------CSA----------------- 100
           LI   T+    D   + L EM   G+              C A                 
Sbjct: 305 LIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFG 364

Query: 101 -----VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
                VTYNT+++G  K ++  + E   + M E G   PD+ T  ++I  Y   GNIEK 
Sbjct: 365 CLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG-VPPDLCTFTTLIHGYCRDGNIEKA 423

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            ++++  +   ++ DI T N L     R G   K   + D M  R  FP  VTY+I+I++
Sbjct: 424 LQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDS 483

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             + G ++    +  +M ++G+ PN +TY S++  Y ++G + K    L ++ +  V+ D
Sbjct: 484 HCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPD 543

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N +I  Y + G + +   L   M+  +  PD +T+  +I  ++  G  + A  +  
Sbjct: 544 LITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYK 603

Query: 336 KMIA 339
           KM A
Sbjct: 604 KMGA 607



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 143/312 (45%), Gaps = 2/312 (0%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P V  +  +V A  ++G ++ A + I+ M S    KP + TY+ ++K   +  R+D   +
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSMVS-KGIKPGLVTYNSVLKGLLRNGRWDKARE 250

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +   M   G+     ++N +I G+ +A + EE    +  M       PD+ + + +I  +
Sbjct: 251 VFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEM-RGRRVTPDVVSFSCLIGLF 309

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G ++   ++  E    G+  D     ++   + RAG+  +   V D M      P V
Sbjct: 310 TRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDV 369

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VTYN ++    K   +   EE   +MK RG+ P+  T+ +L+  Y + G I K       
Sbjct: 370 VTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDT 429

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + +  +  D   +N +I    + GD+ K  EL+  M  R   P+++T++ +I ++   G 
Sbjct: 430 ISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQ 489

Query: 327 TEAAQNLENKMI 338
            + A    ++M+
Sbjct: 490 VDNAFAFLDEMV 501



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 134/272 (49%), Gaps = 1/272 (0%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S+ + + YT +I++ S  K  +F  ++ +++EM    +    VT+N ++D   +A   E 
Sbjct: 153 SNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEA 212

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             +   +MV S G  P + T NS++     +G  +K  + +   +  GV  D+++ N+L 
Sbjct: 213 AMALIDSMV-SKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLI 271

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + RAG  ++       M+ R   P VV+++ +I  F + G ++   EY ++M+  G+ 
Sbjct: 272 GGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLM 331

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ + Y  ++  + +AGL+++   +  ++     + D   +N +++   +   +    EL
Sbjct: 332 PDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEEL 391

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              MKER   PD  TF T+I  Y   G  E A
Sbjct: 392 LNEMKERGVPPDLCTFTTLIHGYCRDGNIEKA 423



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 1/163 (0%)

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           TLNI+  SY +   + ++ +V+  M+KR  FP VVT+N++++   +AG +E        M
Sbjct: 161 TLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSM 220

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
             +G+KP  +TY S++    + G   K   + R ++   V  D   FN +I  + +AG++
Sbjct: 221 VSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGEL 280

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
           E+    +  M+ R   PD ++F+ +I  +   G M  AA+ L 
Sbjct: 281 EEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLR 323


>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 166/328 (50%), Gaps = 11/328 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--C 61
           LG+  +   A+LLF+ ML +  +     YTALV+AYG++ + +EA +  + MK  ++  C
Sbjct: 56  LGREGRVHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAVFSHMKESNEPNC 115

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMS------YLGIECSAVTYNTIIDGYGKAKK 115
           +P+  T + LI +  K   +D   ++  +M         G E + +TYN +ID   K   
Sbjct: 116 QPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITYNVLIDALCKEGL 175

Query: 116 FEEMESSFSAMVESG---GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
            +        M +        P+  T N++I+A G  G  EK E+  +     GV+ D  
Sbjct: 176 LDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELVDLMVEHGVQPDHI 235

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T   L  +YG+AG+++   +    M+       V+ Y  +I+ +G+ G  +K EE FK M
Sbjct: 236 TYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMM 295

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           +H G++PN +TY SL+ AY KAGL  +  ++   +  S    +   ++ +I AYG+AG+ 
Sbjct: 296 QHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAGNY 355

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQA 320
            +   +   M+   C P+ IT++ ++ +
Sbjct: 356 LEAARMLDMMRRAGCQPNLITYSAILSS 383



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 140/288 (48%), Gaps = 14/288 (4%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+   Y+ LI    +  R      +  EM     +    TY  +++ YGKAK FEE  + 
Sbjct: 44  PNSRLYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAV 103

Query: 123 FSAMVESG--GCHPDIFTLNSMISAYGNSGNIEK-------MEKWYNEFNLMGVKADIQT 173
           FS M ES    C P+  T N++I A    G  ++       M    N     G + ++ T
Sbjct: 104 FSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLE-HGCEPNVIT 162

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
            N+L  +  + G+ D    V+ +M+     +   P   TYN +I   GK G  EK EE  
Sbjct: 163 YNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELV 222

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
             M   G++P+ ITY +L+ AY KAGL    ++  + ++ ++V +D   +  +I AYG+ 
Sbjct: 223 DLMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAYGRE 282

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           G  +K  E+F  M+     P+ +T+ ++++AY   G+ E ++N+ N M
Sbjct: 283 GLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIM 330



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 134/251 (53%), Gaps = 4/251 (1%)

Query: 21  LSDGLKPSVDVYTALVSAYGQSGLLD---EAFSTINDMKSVSDCKPDVYTYSILIKSCTK 77
           L  G +P+V  Y  L+ A  + GLLD   +    + D  +    +P+  TY+ LI +C K
Sbjct: 152 LEHGCEPNVITYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGK 211

Query: 78  FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
              ++  E+++  M   G++   +TY  +ID YGKA  +E  E++F  M +      D+ 
Sbjct: 212 GGLYEKAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGM-KGTNVSVDVM 270

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
              +MI AYG  G  +K E+ +      G++ +  T   L ++YG+AG+ ++ R+V + M
Sbjct: 271 AYTAMIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIM 330

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++  +   V+ Y+ +I+ +GKAG+  +       M+  G +PN ITY +++S+  K+   
Sbjct: 331 RESGYEGNVLIYSSLIDAYGKAGNYLEAARMLDMMRRAGCQPNLITYSAILSSCCKSNCW 390

Query: 258 MKVDSILRQVE 268
           ++   +LR+++
Sbjct: 391 VEAQVLLRRLQ 401



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M   GK   PE++  +F +M   G + +V +Y++L+ AYG++G   EA   + DM   + 
Sbjct: 311 MEAYGKAGLPEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAGNYLEAARML-DMMRRAG 369

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 95
           C+P++ TYS ++ SC K + +   + +L  +   G
Sbjct: 370 CQPNLITYSAILSSCCKSNCWVEAQVLLRRLQVFG 404



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 9/132 (6%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++ ++ P    Y  +I   G+ G +      F++M     + +  TY +LV+AY KA + 
Sbjct: 38  KQSWYCPNSRLYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMF 97

Query: 258 ---MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK------ERHCV 308
              + V S +++    +   +T   N +I A  + G  ++  ++F  M+      E  C 
Sbjct: 98  EEALAVFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCE 157

Query: 309 PDNITFATMIQA 320
           P+ IT+  +I A
Sbjct: 158 PNVITYNVLIDA 169


>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
 gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
          Length = 384

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 157/319 (49%), Gaps = 3/319 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAY-GQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           A  LF  M+ DG + +V  YT ++  Y  Q   LD A   +  MK  S  KPD   Y+ L
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKE-SGKKPDEILYNCL 59

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +       R +  EKIL +M    +  + VTY  +I  Y  A + ++    F  M + G 
Sbjct: 60  VNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIKEYANAGRLQDCRKLFQEMKDKGE 119

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P+ +T N++I  YG  G  ++  + Y+E + +G   D+ T NI    YG+ G+ + M 
Sbjct: 120 S-PNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDME 178

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++D M  +   P  VTYN +++ + K  +  K  E  ++M   G +PN  TY  ++S+ 
Sbjct: 179 RLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSA 238

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K   + +   +   +++  V+ +   ++ ++S YG+ G   +  +L+  M E  C+P  
Sbjct: 239 RKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCI 298

Query: 312 ITFATMIQAYNALGMTEAA 330
           I ++ +I++Y   GM + A
Sbjct: 299 IAYSGLIESYGHHGMYQEA 317



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 154/323 (47%), Gaps = 2/323 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  L EVM   G KP   +Y  LV+    SG L+ A   ++DMK       ++ TY+ 
Sbjct: 35  DHALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKQ-DKVSANLVTYTN 93

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LIK      R     K+  EM   G   ++ TYN +I GYG+   F+E    +  M +  
Sbjct: 94  LIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEM-DGV 152

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC  D+ T N  I+ YG  G +E ME+  +E +  GV  D  T N L   Y +   + K 
Sbjct: 153 GCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKA 212

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M +  + P + TYNI++ +  K   + +  + F+ +K +G+ PN +TY +++S 
Sbjct: 213 HEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSL 272

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y + GL  +   +  ++  +  I     ++ +I +YG  G  ++    F  M++   VPD
Sbjct: 273 YGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPD 332

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
              +  ++ AY   G    A+ L
Sbjct: 333 TKIYTALMDAYGKAGRCREAELL 355



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 2/222 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + M GK    E    L + M + G+ P    Y  L+  Y +     +A   + +M + + 
Sbjct: 165 IAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREM-TEAG 223

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            +P+++TY+I++ S  K        ++   +   G+  + VTY+ ++  YG+   + E  
Sbjct: 224 YRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAA 283

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +  M+E+G C P I   + +I +YG+ G  ++    + +    G+  D +    L  +
Sbjct: 284 KLWDEMIEAG-CIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDA 342

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
           YG+AG   +   +   M K  F P  +TY I++  F  AG +
Sbjct: 343 YGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAGRL 384


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 158/317 (49%), Gaps = 2/317 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G+KP+V  Y  +++ Y   G  + A      MK   + KPD YTY+  I    K  R + 
Sbjct: 247 GVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKD-KNLKPDCYTYNSFISRLCKERRIEE 305

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +L ++   G+  +AVTYN +IDG       ++  +    M+  G     +FT N +I
Sbjct: 306 ASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIV-ASVFTYNLLI 364

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A      IE+ E    E    GV+ D+ T NI    Y R G   K  S+ D M ++   
Sbjct: 365 HALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIR 424

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PTV TY  +I+ FGK   + + EE FKK    GM P+ I + +L+  +   G I +   +
Sbjct: 425 PTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQL 484

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L++++N+ V+ D   FN ++  Y +   VE+  +L   MKER   PD+I++ T+I  Y+ 
Sbjct: 485 LKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSK 544

Query: 324 LGMTEAAQNLENKMIAM 340
            G  + A  + ++M+++
Sbjct: 545 RGDMKDALEVFDEMLSL 561



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 157/323 (48%), Gaps = 14/323 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ E+AS +   +L  GL P+   Y AL+      G LD+AF+  ++M +      
Sbjct: 297 LCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMN-RGIVA 355

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V+TY++LI +     R +  E ++ EM   G+E   VTYN  I+GY +    ++  S F
Sbjct: 356 SVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLF 415

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MVE     P + T  S+I  +G    + + E+ + +    G+  DI   N L   +  
Sbjct: 416 DEMVEK-NIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCV 474

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+   ++  M      P  VT+N +++ + +   +E+ ++   +MK RG+KP+ I+
Sbjct: 475 NGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHIS 534

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF------FNCIISAYGQAGDVEKMGE 297
           Y +L+S YSK G       +   +E  D +L   F      +N +I  Y + G+ +   E
Sbjct: 535 YNTLISGYSKRG------DMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEE 588

Query: 298 LFLTMKERHCVPDNITFATMIQA 320
           L   M+ +   PD+ T+  +I+A
Sbjct: 589 LLREMQSKGITPDDSTYLYVIEA 611



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 3/302 (0%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           V+  L+SAY Q    DEA   +N MK  ++  P   T + L+    K ++  +   +  E
Sbjct: 149 VFDLLLSAYCQFRKPDEALECLNLMKE-NEIIPKTETCNSLLSLLLKLNKIKMAWFVYEE 207

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M  + I+ S VT+N +I+   +  K+++ +  F   +E  G  P++ T N++I+ Y   G
Sbjct: 208 MVKMNIKSSIVTFNIMINILCREGKWKKAKD-FIGHMEVYGVKPNVVTYNTVINGYCLRG 266

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
             E   K +       +K D  T N       +    ++   V+  + +    P  VTYN
Sbjct: 267 KFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYN 326

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I+     G ++K   Y  +M +RG+  +  TY  L+ A      I + + +++++   
Sbjct: 327 ALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREK 386

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEA 329
            V  D   +N  I+ Y + G+ +K   LF  M E++  P   T+ ++I  +     M+EA
Sbjct: 387 GVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEA 446

Query: 330 AQ 331
            +
Sbjct: 447 EE 448



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 2/171 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  +  +A   F+  + +G+ P + ++ AL+  +  +G +D AF  + +M + +   
Sbjct: 436 VFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDN-AKVV 494

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  T++ L++   +  + +  +K+L EM   GI+   ++YNT+I GY K    ++    
Sbjct: 495 PDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEV 554

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
           F  M+ S G  P + T N++I  Y   G  +  E+   E    G+  D  T
Sbjct: 555 FDEML-SLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDST 604



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 89/203 (43%)

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I T N MI+     G  +K + +     + GVK ++ T N +   Y   G ++    +  
Sbjct: 217 IVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFK 276

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ +   P   TYN  I    K   IE+      K+   G+ PN++TY +L+      G
Sbjct: 277 TMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKG 336

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + K  +   ++ N  ++     +N +I A      +E+  ++   M+E+   PD +T+ 
Sbjct: 337 DLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYN 396

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
             I  Y   G  + A +L ++M+
Sbjct: 397 IQINGYCRCGNAKKALSLFDEMV 419



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 2/182 (1%)

Query: 158 W--YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           W  Y E   M +K+ I T NI+     R G + K +  +  M+     P VVTYN VI  
Sbjct: 202 WFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVING 261

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           +   G  E   + FK MK + +KP+  TY S +S   K   I +   +L ++  S ++ +
Sbjct: 262 YCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPN 321

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N +I      GD++K       M  R  V    T+  +I A       E A+++  
Sbjct: 322 AVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIK 381

Query: 336 KM 337
           +M
Sbjct: 382 EM 383


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 171/345 (49%), Gaps = 10/345 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKP 63
           G+C++   A  +F+ M   G KP++  Y  ++ A G+ G+ L +A    ++M+     +P
Sbjct: 249 GRCRE---ALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQK-EGVEP 304

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  T++ LI  C++   ++  +++ AEM   GIE    T+NT+ID   K  + E + +S 
Sbjct: 305 DRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQME-LAASI 363

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              +      P++ T ++MI  YG  G  E+    Y++    GV+ D  + N L   Y +
Sbjct: 364 MTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAK 423

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G +D        M++      VVTYN +I+ +GK G  +     F KMK  G+ PN +T
Sbjct: 424 LGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLT 483

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+ +YSKAG+   V ++  + + + +  D   ++ +I +  + G VE    L   M 
Sbjct: 484 YSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMT 543

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQ----NLENKMIAMKENS 344
           +    P+ +T+ ++I AY   G  +  +    N+ N +  + E S
Sbjct: 544 QAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERS 588



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 145/300 (48%), Gaps = 3/300 (1%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           ++S  G+ G ++ A    N  +  +    +VY YS ++ +  +  R     K+   M   
Sbjct: 206 MISTLGRLGKVEIALDVFNRAQK-AGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKA 264

Query: 95  GIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153
           G + + +TYNTIID  GK     ++    F  M +  G  PD  T NS+I+     G  E
Sbjct: 265 GCKPNLITYNTIIDACGKGGVDLKQALDIFDEM-QKEGVEPDRITFNSLIAVCSRGGLWE 323

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
             ++ + E    G++ DI T N L  +  + G  +   S+M  M+ +   P VVTY+ +I
Sbjct: 324 DSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMI 383

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
           + +GK G  E+    +  MK  G++P+ ++Y +L+  Y+K G         + +E   + 
Sbjct: 384 DGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLK 443

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   +N +I AYG+ G  +    LF  MK    VP+ +T++ +I +Y+  GM +   N+
Sbjct: 444 ADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNV 503



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 141/377 (37%), Gaps = 80/377 (21%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  Q E A+ +   M    + P+V  Y+ ++  YG+ G  +EA S  +DMK  S  +PD 
Sbjct: 353 KGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKE-SGVRPDR 411

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            +Y+ LI    K  RFD       +M  +G++   VTYN +ID YGK  K+++    F  
Sbjct: 412 VSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDK 471

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD--------------- 170
           M +  G  P++ T +++I +Y  +G  + +   + EF   G+K D               
Sbjct: 472 M-KGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCG 530

Query: 171 --------------------IQTLNILTKSYGRAGMYDKMR------------------- 191
                               I T N L  +YGR G  DK+                    
Sbjct: 531 LVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERSME 590

Query: 192 ----------------------SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
                                 SV   MQ+    P VVT++ ++    +   +++     
Sbjct: 591 VVRKPPPSQQNASDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCASLQEASVLL 650

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M+        I +  L+    +  + ++   +  ++   D      F+N +       
Sbjct: 651 EQMRFFDGWVYGIAHGLLMGLREQ--VWVEAQRLFDEISRMDYATGAAFYNALTDVLWHF 708

Query: 290 GDVEKMGELFLTMKERH 306
           G  +   E+ +  K R 
Sbjct: 709 GQRQGAQEVVVAAKRRQ 725



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 3/199 (1%)

Query: 142 MISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTL-NILTKSYGRAGMYDKMRSVMDFMQK 199
           ++   GN G  E+  + Y      + ++++   L +I+  + GR G  +    V +  QK
Sbjct: 169 LLRELGNRGEWERALQGYEWMVQQVHLRSEWSKLASIMISTLGRLGKVEIALDVFNRAQK 228

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
             F   V  Y+ ++  +G++G   +  + F+ MK  G KPN ITY +++ A  K G+ +K
Sbjct: 229 AGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLK 288

Query: 260 -VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
               I  +++   V  D   FN +I+   + G  E    +F  M+ R    D  TF T+I
Sbjct: 289 QALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLI 348

Query: 319 QAYNALGMTEAAQNLENKM 337
            A    G  E A ++   M
Sbjct: 349 DAVCKGGQMELAASIMTTM 367


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 163/345 (47%), Gaps = 39/345 (11%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
           V+     +P +  Y  L+ AYGQ   L EA +    +   + C P   TY++L+++    
Sbjct: 162 VLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLE-ARCVPTEDTYALLLRAYCGS 220

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------ 126
            +    E +++EM   GI  +A  YN  +DG  KA+  E+    +  M            
Sbjct: 221 GQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTY 280

Query: 127 ----------------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
                                 ++S GC P+I T  ++++A+   G  EK E+ + E   
Sbjct: 281 XLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 340

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G + D+   N L ++Y RAG+      +   M+     P   +YNI+++ FG+AG  ++
Sbjct: 341 AGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQE 400

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
            E  F+++K +GM+P   ++  L+SA++++G + + + ++ Q+  S +  DT   N +++
Sbjct: 401 AEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLN 460

Query: 285 AYGQAGDVEKMGELFLTMKE----RHCVPDNITFATMIQAYNALG 325
           AYG+AG ++ M  LF  M+         PD  T+  ++ AY   G
Sbjct: 461 AYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAG 505



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 159/302 (52%), Gaps = 6/302 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  QP  +  +F  M S G KP++  YTALV+A+ + GL ++A     +M+     +PD
Sbjct: 288 GKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPD 346

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VY Y+ L+++ ++        +I + M ++G E    +YN ++D +G+A   +E E++F 
Sbjct: 347 VYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQ 406

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + + G   P + +   ++SA+  SGN+ + E+   + +  G++ D   LN +  +YGRA
Sbjct: 407 ELKQQG-MRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRA 465

Query: 185 GMYDKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           G  D M  +   M++        P   TYN+++  +G+AG++++ME  F+ +  RG+  +
Sbjct: 466 GRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAAD 525

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T+ S + AY++     +   +  ++ ++    D      +++A      VE++  +  
Sbjct: 526 VVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTAIVR 585

Query: 301 TM 302
           +M
Sbjct: 586 SM 587



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 155/322 (48%), Gaps = 8/322 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  E+A  +++ M  +  + + + Y  +++ YG++     +     +MKSV  CKP
Sbjct: 252 LLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVG-CKP 310

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A   +     F
Sbjct: 311 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 370

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M E  GC PD  + N ++ A+G +G  ++ E  + E    G++  +++  +L  ++ R
Sbjct: 371 SLM-EHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAR 429

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-----MK 238
           +G   +   VM  + K    P     N ++  +G+AG ++ ME  F  M+ RG       
Sbjct: 430 SGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAME-RGDGASAGA 488

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++ TY  LV+AY +AG + ++++  R +    +  D   +   I AY +  +  +   +
Sbjct: 489 PDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRV 548

Query: 299 FLTMKERHCVPDNITFATMIQA 320
           F  M +  C PD  T   ++ A
Sbjct: 549 FEEMVDAGCYPDAGTAKVLLAA 570


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 154/322 (47%), Gaps = 1/322 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  Q E +  L   M  + + P++  Y  +++A  + GL  E    +         +PD
Sbjct: 120 GRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPD 179

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY+ L+ +C+     +    +   M+  G+   ++TYN ++D YG+A + E +     
Sbjct: 180 IITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLR 239

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E  G  PD+   N +I AYG +G      K + +    G   D+ T + L ++YG+ 
Sbjct: 240 EM-EQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKH 298

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G YD++R +   M++R   P V TYN +I+ FG+ G  ++    F  +   G++P+  TY
Sbjct: 299 GCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTY 358

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L+ +  K GL      I R +  S V   T  F  +I+AYG A    +    F +MKE
Sbjct: 359 AGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKE 418

Query: 305 RHCVPDNITFATMIQAYNALGM 326
             C PD  T+  +I A+   G+
Sbjct: 419 SGCKPDLETYNALIGAHAGGGL 440



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 162/314 (51%), Gaps = 3/314 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+  VYT ++   G+ G+LD+A     DM  ++D + +VY+++ LI +  +  + +   
Sbjct: 71  KPNEHVYTIMIGIMGREGMLDKASELFEDMP-LNDVEWNVYSFTALINAYGRNGQHEASL 129

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            +LA M    +  + +TYNT+I+   K   ++E +   F+ M   G   PDI T N+++S
Sbjct: 130 HLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEG-IQPDIITYNTLLS 188

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A  + G +E+    +   N  GV  D  T N L   YG+A  ++ +  ++  M++    P
Sbjct: 189 ACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAP 248

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            VV YNI+IE +G+AG      + FK+M+  G  P+ +T+ +L+ AY K G   +V  + 
Sbjct: 249 DVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLF 308

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             ++      D   +N +I  +GQ G  ++   LF  + +    PD  T+A ++ +    
Sbjct: 309 TDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKG 368

Query: 325 GMTEAAQNLENKMI 338
           G+ +AA+ +   M+
Sbjct: 369 GLHKAAKKIHRHML 382



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 154/321 (47%), Gaps = 2/321 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A ++F  M   G+ P    Y ALV  YGQ+   +     + +M+   +  PDV  Y+I
Sbjct: 197 EEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNA-PDVVAYNI 255

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI++  +  ++    K+  +M   G     VT++T+++ YGK   ++E+   F+ M E G
Sbjct: 256 LIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERG 315

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T N++I  +G  G  ++    + +    GV+ D+ T   L  S G+ G++   
Sbjct: 316 -TEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAA 374

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + +   M + +  PT   +  +I  +G A    +    F  MK  G KP+  TY +L+ A
Sbjct: 375 KKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLETYNALIGA 434

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           ++  GL  +  S    + +  +  D   +N +I A+G+ G  +   E    M+E  C P+
Sbjct: 435 HAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPN 494

Query: 311 NITFATMIQAYNALGMTEAAQ 331
             T+  ++  Y   G+ + A+
Sbjct: 495 RHTYEALMGVYCTAGLFDEAK 515



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 154/325 (47%), Gaps = 8/325 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILI 72
           LF  M  +G++P +  Y  L+SA    GL++EA   F T+N+   V    PD  TY+ L+
Sbjct: 167 LFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVV----PDSITYNALV 222

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               +  R + + ++L EM   G     V YN +I+ YG+A K+      F  M E+G C
Sbjct: 223 DIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAG-C 281

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PD+ T ++++ AYG  G  +++   + +    G + D+ T N L + +G+ G + +  +
Sbjct: 282 TPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESIN 341

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   +      P + TY  ++ + GK G  +  ++  + M    + P +  +  L++AY 
Sbjct: 342 LFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYG 401

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
            A L  +       ++ S    D   +N +I A+   G   + G  +LTM +     D  
Sbjct: 402 NAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADVS 461

Query: 313 TFATMIQAYNALGMTEAAQNLENKM 337
           T+ ++I+A+   G+ + A      M
Sbjct: 462 TYNSLIEAFGRGGLFDDAIEFSRDM 486



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 1/236 (0%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           ++ I   + +   +++    F  M     C P+      MI   G  G ++K  + + + 
Sbjct: 41  FSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDM 100

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-H 221
            L  V+ ++ +   L  +YGR G ++    ++  M++    P ++TYN VI    K G  
Sbjct: 101 PLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLE 160

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            E +   F +M+H G++P+ ITY +L+SA S  GL+ +   + R +  + V+ D+  +N 
Sbjct: 161 WEGLLGLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNA 220

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++  YGQA   E +GEL   M++    PD + +  +I+AY   G   AA  +  +M
Sbjct: 221 LVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQM 276



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 2/249 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK    ++  LLF  M   G +P V+ Y  L+  +GQ G   E+ +   D+      +PD
Sbjct: 296 GKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLD-GGVEPD 354

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY+ L+ SC K       +KI   M    +  +   +  +I  YG A  + E   +F+
Sbjct: 355 MSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFN 414

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           +M ESG C PD+ T N++I A+   G   +    Y      G+ AD+ T N L +++GR 
Sbjct: 415 SMKESG-CKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRG 473

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G++D        M++    P   TY  ++  +  AG  ++ +  F  ++  G  P+  +Y
Sbjct: 474 GLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSY 533

Query: 245 CSLVSAYSK 253
           C L+S  ++
Sbjct: 534 CLLLSVCAR 542


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 179/412 (43%), Gaps = 72/412 (17%)

Query: 1   MVML-GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM-KSV 58
           M+ L  + ++ +QA  LF  M     KP V+ Y AL++ +G++G    A    +DM ++ 
Sbjct: 93  MIWLHARHQRADQARGLFYEMKVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQAP 152

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-------- 110
               P   +Y+ LI +C    ++    +I   M+  G+    +TYN I+  +        
Sbjct: 153 KPIAPSRSSYNNLINACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRH 212

Query: 111 ---------------------------GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
                                       K  +FE+  + F  M +  GC PD+ T N+++
Sbjct: 213 AVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALL 272

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             Y   G I K ++ ++     G+   I T N L  +Y   GMY +   V+  + K  F 
Sbjct: 273 HVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFE 332

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN----------------------- 240
           P VV+Y+ ++  FGKAG+ EK +E F  MK R  KPN                       
Sbjct: 333 PDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERAREL 392

Query: 241 ------------SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
                        +T CSL +A ++A    KV  +  + +   + L+ P FN  I+AY +
Sbjct: 393 LHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIE 452

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           AG  ++   L   M+E++  P+ +TF  +I A  +LG    A+ L +KM+ +
Sbjct: 453 AGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLYDKMVDL 504



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 153/343 (44%), Gaps = 37/343 (10%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           + AL+S   ++G L+ +    N MK+    +     Y+ +I    +  R D    +  EM
Sbjct: 54  FPALISEITRTGALEHSLRVFNWMKNQKCYRARTDIYNCMIWLHARHQRADQARGLFYEM 113

Query: 92  SYLGIECSAVTYNTIIDGYGKAKK-------FEEM----------ESSFSAMVES----- 129
                +    TYN +++ +G+A +       F++M           SS++ ++ +     
Sbjct: 114 KVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSG 173

Query: 130 --------------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
                          G  PD+ T N ++SA+ + G       +Y+      V  D  + N
Sbjct: 174 QWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHN 233

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           I+     + G ++   ++   M+K     P VVT+N ++  +   G I K +E F  M  
Sbjct: 234 IILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIG 293

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            GM P  +T+ +L+ AY+  G+  +   ++  +  +    D   ++ +++A+G+AG  EK
Sbjct: 294 EGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEK 353

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             E+F  MK+R   P+ +TF  ++ AY + G  E A+ L + M
Sbjct: 354 AQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDM 396



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/366 (19%), Positives = 163/366 (44%), Gaps = 39/366 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           QP  A   ++ ++S  +      +  +++   + G  ++A +   +M+ ++ C+PDV T+
Sbjct: 209 QPRHAVAYYDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTF 268

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + L+       +    ++    M   G+  + VT+NT++  Y     + E       +V+
Sbjct: 269 NALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVK 328

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           +    PD+ + +S+++A+G +G  EK ++ ++       K ++ T N L  +Y  AG Y+
Sbjct: 329 AK-FEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYE 387

Query: 189 KMRSVMDFMQKRFFFPTVVT-----------------------------------YNIVI 213
           + R ++  M +    P VVT                                   +N  I
Sbjct: 388 RARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAI 447

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
             + +AG  ++ +   + M+ + ++PN +T+  L++A    G   +  ++  ++ +  + 
Sbjct: 448 TAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLYDKMVDLGIP 507

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           L     + +I+A+ + G   +   +F  M++  C  + +T+ +++ AY    M + AQ  
Sbjct: 508 LTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIAYR---MYDDAQLA 564

Query: 334 ENKMIA 339
             +M+A
Sbjct: 565 CEEMVA 570



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 148/342 (43%), Gaps = 55/342 (16%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A  L++ M+  G+  +V+  +AL++A+ + G+ +EA +  +DM+  + CK +V TY+ 
Sbjct: 492 REARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRK-AGCKANVVTYTS 550

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+     +  +D  +    EM   GI   ++ + T+     KA + E++     +    G
Sbjct: 551 LM---IAYRMYDDAQLACEEMVAAGITPDSIAFGTLFVALNKANRSEKVLQIEKSSRARG 607

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM-GVK------ADIQTLNILTKSYGR 183
               D+    ++++         +++ W     L  G+K       +   +N+L+ + GR
Sbjct: 608 ILFDDVAYTETLLAC-------SRLKDWETALFLYEGMKKRRLRLTNTMVINLLS-AVGR 659

Query: 184 AGMYDKMRSV-MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +G  D++  V ++  Q+  F PT+  YNI+I+++ +     K  E    +K   ++PN  
Sbjct: 660 SGKLDRLHKVFLELQQQIGFVPTLQMYNILIDSYSRGLKWRKCLEVLGCIKKDILEPNWK 719

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  ++S  S             Q+E  +  L                  E  GE+    
Sbjct: 720 TYEPILSCLS-------------QLELWETYL------------------EIYGEVLAQG 748

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
            E    PD       + AY +LGM E A   E ++  ++  +
Sbjct: 749 ME----PDYNILKISVTAYTSLGMEEEASLTEARLQGLRRET 786



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 3/172 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++   + K  E A  L+E M    L+ +  +   L+SA G+SG LD       +++    
Sbjct: 619 LLACSRLKDWETALFLYEGMKKRRLRLTNTMVINLLSAVGRSGKLDRLHKVFLELQQQIG 678

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P +  Y+ILI S ++  ++    ++L  +    +E +  TY  I+    + + +E   
Sbjct: 679 FVPTLQMYNILIDSYSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLELWETYL 738

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
             +  ++ + G  PD   L   ++AY + G  E  E    E  L G++ + +
Sbjct: 739 EIYGEVL-AQGMEPDYNILKISVTAYTSLGMEE--EASLTEARLQGLRRETK 787


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 156/314 (49%), Gaps = 2/314 (0%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K  + ++A  L + M +  + P +  YT+L+   G+SG L+EAF+    M      +P
Sbjct: 713  LVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGH-EP 771

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            DV  Y+ L+    K  +      I   M+        VTY+++ID  GK  + EE    F
Sbjct: 772  DVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFF 831

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
               + S GC P++   +S+I ++G  G +++  + + E        +I T N L     +
Sbjct: 832  ENSI-SKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAK 890

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            AG  +    +++ M+K    P +VTYNI+I+  GK G +++ E YFK+MK +G+ P+ IT
Sbjct: 891  AGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVIT 950

Query: 244  YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
            + SL+ +  K   +++   +   +E          +N +I   G+AG V +   +F  MK
Sbjct: 951  FTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMK 1010

Query: 304  ERHCVPDNITFATM 317
             + C+PD IT   M
Sbjct: 1011 VKGCMPDGITIGIM 1024



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 157/349 (44%), Gaps = 35/349 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------- 57
           K  Q E++  LF+ M+  G    V  Y+ +++   +S  +D+A      MK         
Sbjct: 610 KRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLG 669

Query: 58  ---------VSDCK-----------------PDVYTYSILIKSCTKFHRFDLIEKILAEM 91
                    V D K                 PD + Y+I++    K +R D   K++  M
Sbjct: 670 NYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSM 729

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
               I     TY +++DG GK+ + EE  + F+ M E G   PD+    S++   G  G 
Sbjct: 730 KNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGH-EPDVVAYTSLMDVLGKGGK 788

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +      +          D+ T + L  S G+ G  ++     +    +   P V  Y+ 
Sbjct: 789 LSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSS 848

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I++FGK G +++  E F++M+ R   PN +TY +L+S  +KAG +   + +L ++E   
Sbjct: 849 LIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVG 908

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            + D   +N +I   G+ G V++    F  MKE+  VPD ITF ++I++
Sbjct: 909 CVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIES 957



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 154/330 (46%), Gaps = 8/330 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L EVM      P+V  YT LV   G++G LDEA S + +M+    C+P V TYS 
Sbjct: 545 DEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEK-QGCEPSVVTYSS 603

Query: 71  LIKSCTKFHRFDLIEKILA---EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           L+ S   F++ D  E+ L+   EM   G      TY+ +I+   K+   ++    F  M 
Sbjct: 604 LMAS---FYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMK 660

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E G   P +    +++S+      I+   + +NE     +  D    NI+     ++   
Sbjct: 661 EEG-MEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRV 719

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D+   ++D M+ +   P + TY  +++  GK+G +E+    F KM   G +P+ + Y SL
Sbjct: 720 DEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSL 779

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +    K G +     I R +     + D   ++ +I + G+ G VE+    F     + C
Sbjct: 780 MDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGC 839

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKM 337
            P+   ++++I ++   GM + A  L  +M
Sbjct: 840 TPNVGVYSSLIDSFGKKGMVDRALELFEEM 869



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 156/322 (48%), Gaps = 12/322 (3%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+  G+ P V  +T L+ A  +SG +DEA    N MK++  C P+V TY+ L+    K  
Sbjct: 313 MIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLR-CSPNVVTYTTLVNGLAKAG 371

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R +   ++  EM        A+ YNT+IDG GKA + +     F  M + G   P++ T 
Sbjct: 372 RLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRG-LVPNLRTY 430

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N MIS  G +G   +  + +++    G   D+ T N L    G+ G  DK+ +++  M +
Sbjct: 431 NIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVE 490

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS---ITYCSLVSAYSKAGL 256
           +           +I     AGH   +E   + +++  +   S   ITY +L+SA+   G 
Sbjct: 491 K-------GGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGH 543

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + +   +L  ++  + I     +  ++   G+AG +++   L   M+++ C P  +T+++
Sbjct: 544 VDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSS 603

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           ++ ++      E + +L ++M+
Sbjct: 604 LMASFYKRDQEEESLSLFDEMV 625



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 2/243 (0%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            M +LGK  +   A ++F  M      P V  Y++L+ + G+ G ++EA+    +  S   
Sbjct: 780  MDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSIS-KG 838

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            C P+V  YS LI S  K    D   ++  EM       + VTYN ++ G  KA +    E
Sbjct: 839  CTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAE 898

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                 M E  GC PD+ T N +I   G  G +++ E ++      G+  D+ T   L +S
Sbjct: 899  KLLEEM-EKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIES 957

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             G+     +   + D M++  + P+VVTYN++I+  G+AG + +    F +MK +G  P+
Sbjct: 958  LGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPD 1017

Query: 241  SIT 243
             IT
Sbjct: 1018 GIT 1020



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 163/365 (44%), Gaps = 33/365 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + + A  LF+ M   GL P++  Y  ++S  G++G   EA+   +D+K      P
Sbjct: 402 LGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKE-QGAVP 460

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC------------------------- 98
           DV+TY+ LI    K  + D +  I+ EM   G EC                         
Sbjct: 461 DVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPS 520

Query: 99  ------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152
                   +TYNT++  +      +E       M +   C P + T  +++   G +G +
Sbjct: 521 LGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVM-KKHECIPTVVTYTTLVDGLGKAGRL 579

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           ++      E    G +  + T + L  S+ +    ++  S+ D M ++     V TY++V
Sbjct: 580 DEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLV 639

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           I    K+  +++  + F +MK  GM+P    Y +L+S+  K   I     I  +++ S +
Sbjct: 640 INCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSL 699

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
           + DT  +N +++   ++  V++  +L  +MK ++ +PD  T+ +++      G  E A N
Sbjct: 700 VPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFN 759

Query: 333 LENKM 337
           +  KM
Sbjct: 760 MFTKM 764



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 156/341 (45%), Gaps = 33/341 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A   F  M +    P+V  YT LV+   ++G L+EA     +MK  ++C PD   Y+ 
Sbjct: 339 DEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKE-NNCSPDAIAYNT 397

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K    D+   +  EM   G+  +  TYN +I   GKA +  E    F  + E G
Sbjct: 398 LIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQG 457

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKM-------------------EKWYNEFNLMGVKADI 171
              PD+FT N++I   G  G ++K+                       +E  + G    +
Sbjct: 458 AV-PDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTV 516

Query: 172 Q------------TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           +            T N L  ++   G  D+   +++ M+K    PTVVTY  +++  GKA
Sbjct: 517 EYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKA 576

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G +++     ++M+ +G +P+ +TY SL++++ K     +  S+  ++     + D   +
Sbjct: 577 GRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTY 636

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           + +I+   ++ DV++  ++F  MKE    P    + T++ +
Sbjct: 637 SLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSS 677



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 120/269 (44%), Gaps = 1/269 (0%)

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+++IK        D + +IL  M   G   S     +++  +G           F+
Sbjct: 182 VGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFN 241

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +S GC+P     N ++      G        + +     ++ D QT  I   S+ R+
Sbjct: 242 QM-KSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRS 300

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D     +  M K    P V T+ ++I+   K+G+I++  ++F  MK+    PN +TY
Sbjct: 301 GRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTY 360

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +LV+  +KAG + +   +  +++ ++   D   +N +I   G+AG+ +    LF  MK+
Sbjct: 361 TTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKD 420

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNL 333
           R  VP+  T+  MI      G    A  L
Sbjct: 421 RGLVPNLRTYNIMISVLGKAGRQPEAWQL 449



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 141/335 (42%), Gaps = 37/335 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L   ++ +    +   M  +G + S+ + T+L+  +G +  +  A    N MKS   C P
Sbjct: 192 LAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFG-CNP 250

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
               Y+ +++             +L +  +         Y++ +  +GK  +F       
Sbjct: 251 STNMYNFVLE-------------LLVKGGF---------YHSAVIVFGKLGQFR------ 282

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
                     PD  T    + ++  SG ++   +   E    G+   + T  +L  +  +
Sbjct: 283 --------IQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVK 334

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G  D+     + M+     P VVTY  ++    KAG +E+  E F +MK     P++I 
Sbjct: 335 SGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIA 394

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+    KAG       + +++++  ++ +   +N +IS  G+AG   +  +LF  +K
Sbjct: 395 YNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLK 454

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           E+  VPD  T+ T+I      G  +    +  +M+
Sbjct: 455 EQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMV 489


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 172/364 (47%), Gaps = 42/364 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+  Q E A  +FE  L++G   +V  ++AL+SAYG+SG  DEA      MKS S  K
Sbjct: 194 ILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKS-SGLK 252

Query: 63  PDVYTYSILIKSCTK----FHR--------------------------------FDLIEK 86
           P++ TY+ +I +C K    F+R                                ++    
Sbjct: 253 PNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARN 312

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH--PDIFTLNSMIS 144
           + +EM Y GIE    TYNT++D   K     +M+ +F  M E    H  P++ T +++I 
Sbjct: 313 LFSEMLYRGIEQDIFTYNTLLDAVCKGG---QMDLAFQIMSEMPRKHIMPNVVTYSTVID 369

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
            Y  +G +++    +NE     +  D  + N L   Y + G +++  +V   M+      
Sbjct: 370 GYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKK 429

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
             VTYN ++  +GK G  E+++  F++MK   + PN +TY +L+  YSK GL  +   + 
Sbjct: 430 DAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVF 489

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           R+ + + +  D   ++ +I A  + G VE        M +    P+ +T+ ++I A+   
Sbjct: 490 REFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRS 549

Query: 325 GMTE 328
           G  E
Sbjct: 550 GSAE 553



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 133/298 (44%), Gaps = 37/298 (12%)

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S +I    +  + +L + +       G   +   ++ +I  YG++   +E    F  M +
Sbjct: 189 SAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETM-K 247

Query: 129 SGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           S G  P++ T N++I A G  G +  +  + ++E    GV+ D  T N L    GR G++
Sbjct: 248 SSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLW 307

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           +  R++   M  R     + TYN +++   K G ++   +   +M  + + PN +TY ++
Sbjct: 308 EAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTV 367

Query: 248 VSAYSKAGLI---------MKVDSI--------------------------LRQVENSDV 272
           +  Y+KAG +         MK  SI                           +++E+S +
Sbjct: 368 IDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGI 427

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
             D   +N ++  YG+ G  E++  +F  MK     P+ +T++T+I  Y+  G+ + A
Sbjct: 428 KKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEA 485


>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
 gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
          Length = 384

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 156/319 (48%), Gaps = 3/319 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAY-GQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           A  LF  M+ DG + +V  YT ++  Y  Q   LD A   +  MK  S  KPD   Y+ L
Sbjct: 1   ACSLFYRMMKDGCEATVVTYTVIIHGYLRQKSKLDHALRLLEVMKE-SGKKPDEILYNCL 59

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +       R +  EKIL +M    +  + VTY  +I  Y    + ++    F  M + G 
Sbjct: 60  VNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIKEYANTGRLQDCRKLFQEMKDKGE 119

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P+ +T N++I  YG  G  ++  + Y+E + +G   D+ T NI    YG+ G+ + M 
Sbjct: 120 S-PNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDME 178

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++D M  +   P  VTYN +++ + K  +  K  E  ++M   G +PN  TY  ++S+ 
Sbjct: 179 RLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSSA 238

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K   + +   +   +++  V+ +   ++ ++S YG+ G   +  +L+  M E  C+P  
Sbjct: 239 RKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCI 298

Query: 312 ITFATMIQAYNALGMTEAA 330
           I ++ +I++Y   GM + A
Sbjct: 299 IAYSGLIESYGHHGMYQEA 317



 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 154/323 (47%), Gaps = 2/323 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  L EVM   G KP   +Y  LV+    SG L+ A   ++DMK       ++ TY+ 
Sbjct: 35  DHALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKR-DKVSANLVTYTN 93

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LIK      R     K+  EM   G   ++ TYN +I GYG+   F+E    +  M +  
Sbjct: 94  LIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEM-DGV 152

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC  D+ T N  I+ YG  G +E ME+  +E +  GV  D  T N L   Y +   + K 
Sbjct: 153 GCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKA 212

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M +  + P + TYNI++ +  K   + +  + F+ +K +G+ PN +TY +++S 
Sbjct: 213 HEILREMTEAGYRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSL 272

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y + GL  +   +  ++  +  I     ++ +I +YG  G  ++    F  M++   VPD
Sbjct: 273 YGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPD 332

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
              +  ++ AY   G    A+ L
Sbjct: 333 TKIYTALMDAYGKAGRCREAELL 355



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 2/222 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + M GK    E    L + M + G+ P    Y  L+  Y +     +A   + +M + + 
Sbjct: 165 IAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLDVYAKKSYFVKAHEILREM-TEAG 223

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            +P+++TY+I++ S  K        ++   +   G+  + VTY+ ++  YG+   + E  
Sbjct: 224 YRPNIWTYNIMLSSARKEQSVAEATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAA 283

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +  M+E+G C P I   + +I +YG+ G  ++    + +    G+  D +    L  +
Sbjct: 284 KLWDEMIEAG-CIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDA 342

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
           YG+AG   +   +   M K  F P  +TY I++  F  AG +
Sbjct: 343 YGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANAGRL 384


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  147 bits (370), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 156/315 (49%), Gaps = 2/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G  PSV  Y A++ A   + L   A   ++ M       P+VYTY+IL+++     R + 
Sbjct: 113 GYAPSVPAYNAVLLALSDASL-PSARRFLSSMLR-HGVAPNVYTYNILVRALCARGRLEE 170

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              ++ +M   G   +AVTYNT++  + +A + +  E   S M E G   P++ T NSM+
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           +    +G +E   K ++E    G+  D+ + N L   Y + G   +  +V   M +R   
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVT+  +I    KAG++E+      +M+ RG++ N +T+ +L+  + K G +      
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           + ++    +      +N +I+ Y + G ++   EL   M+ +   PD +T++T+I  Y  
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 410

Query: 324 LGMTEAAQNLENKMI 338
           +G  ++A  L  KM+
Sbjct: 411 VGNLDSAFQLNQKML 425



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 159/328 (48%), Gaps = 1/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +   M   G  P+   Y  LV+A+ ++G LD A   ++ M+   + KP++ T++ 
Sbjct: 169 EEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNS 228

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K  R +   K+  EM   G+    V+YNT++ GY K     E  + FS M + G
Sbjct: 229 MVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRG 288

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T  S+I A   +GN+E+      +    G++ +  T   L   + + G  D  
Sbjct: 289 -LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 347

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              ++ M+K    P+VV YN +I  + K G ++   E  ++M+ + +KP+ +TY +++S 
Sbjct: 348 LLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISG 407

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K G +     + +++    V+ D   ++ +I    +   +    ELF  M +    PD
Sbjct: 408 YCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 467

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
             T+ T+I  +   G  E A +L ++MI
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMI 495



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 146/316 (46%), Gaps = 4/316 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E A  +F+ M+ +GL P V  Y  L+S Y + G L E+ +  ++M       
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ-RGLV 290

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV T++ LI +  K    +    ++A+M   G+  + VT+  +IDG+ K    ++   +
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M +  G  P +   N++I+ Y   G ++   +   E     VK D+ T + +   Y 
Sbjct: 351 VEEMRKC-GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D    +   M K+   P  +TY+ +I    +   +    E F+ M   G++P+  
Sbjct: 410 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 469

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+  + K G + K  S+  ++    V+ D   ++ +I+   ++   ++   L   +
Sbjct: 470 TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL 529

Query: 303 KERHCVPDNITFATMI 318
                VPDNI +  ++
Sbjct: 530 YHEDPVPDNIKYDALM 545



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 148/337 (43%), Gaps = 17/337 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           EQA  L   M   GL+ +   +TAL+  + + G LD+A   + +M+     +P V  Y+ 
Sbjct: 310 EQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG-IQPSVVCYNA 368

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  R DL  +++ EM    ++   VTY+TII GY K    +        M++ G
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T +S+I        +    + +     +GV+ D  T   L   + + G  +K 
Sbjct: 429 -VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKA 487

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            S+ D M ++   P VVTY+++I    K+   ++      K+ H    P++I Y +L+  
Sbjct: 488 LSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLC 547

Query: 251 YSKA---------------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            SKA               GL+ + D + + + + +  LD   ++ +I  + + G+V K 
Sbjct: 548 CSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKA 607

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
                 M      P++ +  ++++     GM   A N
Sbjct: 608 LSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADN 644



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 148/359 (41%), Gaps = 54/359 (15%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   + A L  E M   G++PSV  Y AL++ Y + G +D A   I +M++    K
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA-KRVK 395

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TYS +I    K    D   ++  +M   G+   A+TY+++I G  + K+  +    
Sbjct: 396 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL 455

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT---- 178
           F  M++ G   PD FT  ++I  +   GN+EK    ++E    GV  D+ T ++L     
Sbjct: 456 FENMLQLG-VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLS 514

Query: 179 ----------------------------------------------KSYGRAGMYDKMRS 192
                                                         K +   G+  +   
Sbjct: 515 KSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADK 574

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V   M  R +      Y+I+I    + G++ K   + K+M   G  PNS +  SLV    
Sbjct: 575 VYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLF 634

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           + G++++ D+ ++ +     + D      +I    + G+V+ + ++   M     +P +
Sbjct: 635 EEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPSS 693


>gi|302823876|ref|XP_002993586.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
 gi|300138598|gb|EFJ05361.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
          Length = 451

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 134/261 (51%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           PS+  Y  L  A  Q+GL D+A +   ++    D KPD YT++ ++ +  K   +  +E 
Sbjct: 169 PSLATYNMLTRACAQAGLTDKAEALFLELLRREDLKPDAYTFNGIMDAYAKKGLYRDMEY 228

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
            L EMS  G+    VT+N +ID YG+A  F +ME ++ ++V   GC P   T NSM+++Y
Sbjct: 229 KLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASY 288

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           G S  + KME+     ++ G+  D+ T N L  SYGRAG  D MR   D M +    P V
Sbjct: 289 GQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRSPVKPQV 348

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            T ++++  + + G +++ E  F       +KP   +Y  L  AY +   + K+  ++ +
Sbjct: 349 STLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKAYGEERQLDKMTVLMSK 408

Query: 267 VENSDVILDTPFFNCIISAYG 287
           +E S V     F    + +Y 
Sbjct: 409 MEQSGVESGQEFLLQALESYA 429



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 151/309 (48%), Gaps = 13/309 (4%)

Query: 4   LGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQ----SGLLDEAFSTINDMK-S 57
           +GK  Q   AS +F ++ LS    P   V  A++ A+ +    +  LD A      MK S
Sbjct: 108 MGKQGQLRLASWIFSQLQLSSRTTP---VLNAIIMAHLRCKNVARALDSALDHFGHMKTS 164

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKF 116
           V  C P + TY++L ++C +    D  E +  E+     ++  A T+N I+D Y K   +
Sbjct: 165 VHSC-PSLATYNMLTRACAQAGLTDKAEALFLELLRREDLKPDAYTFNGIMDAYAKKGLY 223

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLN 175
            +ME     M E G   PD+ T N +I AYG +G+  KME+ Y    NL G K    T N
Sbjct: 224 RDMEYKLKEMSEHG-VRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFN 282

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +  SYG++    KM  V+  M      P + T+N ++ ++G+AG ++ M + F KM   
Sbjct: 283 SMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRS 342

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            +KP   T   L+ AY++ GL+ + +++       D+      +  +  AYG+   ++KM
Sbjct: 343 PVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKAYGEERQLDKM 402

Query: 296 GELFLTMKE 304
             L   M++
Sbjct: 403 TVLMSKMEQ 411



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 110/224 (49%), Gaps = 1/224 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S  TYN +     +A   ++ E+ F  ++      PD +T N ++ AY   G    ME  
Sbjct: 170 SLATYNMLTRACAQAGLTDKAEALFLELLRREDLKPDAYTFNGIMDAYAKKGLYRDMEYK 229

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKM-RSVMDFMQKRFFFPTVVTYNIVIETFG 217
             E +  GV+ D+ T N+L  +YGRAG + KM R+    +      P+  T+N ++ ++G
Sbjct: 230 LKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASYG 289

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           ++  + KME+   +M   G+ P+  T+ +L+S+Y +AG +  +     ++  S V     
Sbjct: 290 QSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRSPVKPQVS 349

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             + ++ AY + G V++   LF+   +    P   ++  + +AY
Sbjct: 350 TLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKAY 393



 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F+ M+   +KP V     L+ AY + GL+DEA +   +   + D KP V +Y IL K+  
Sbjct: 336 FDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKL-DIKPAVSSYLILFKAYG 394

Query: 77  KFHRFDLIEKILAEMSYLGIE 97
           +  + D +  ++++M   G+E
Sbjct: 395 EERQLDKMTVLMSKMEQSGVE 415


>gi|302822123|ref|XP_002992721.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
 gi|300139462|gb|EFJ06202.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
          Length = 449

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 134/261 (51%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           PS+  Y  L  A  Q+GL D+A +   ++    D KPD YT++ ++ +  K   +  +E 
Sbjct: 167 PSLATYNMLTRACAQAGLTDKAEALFLELLRRDDLKPDAYTFNGIMDAYAKKGLYRDMEY 226

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
            L EMS  G+    VT+N +ID YG+A  F +ME ++ ++V   GC P   T NSM+++Y
Sbjct: 227 KLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSMLASY 286

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           G S  + KME+     ++ G+  D+ T N L  SYGRAG  D MR   D M +    P V
Sbjct: 287 GQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRSPVKPQV 346

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            T ++++  + + G +++ E  F       +KP   +Y  L  AY +   + K+  ++ +
Sbjct: 347 STLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKAYGEERQLDKMTVLMSK 406

Query: 267 VENSDVILDTPFFNCIISAYG 287
           +E S V     F    + +Y 
Sbjct: 407 MEQSGVESGQEFLLQALESYA 427



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 152/309 (49%), Gaps = 13/309 (4%)

Query: 4   LGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQ----SGLLDEAFSTINDMK-S 57
           +GK  Q   AS +F ++ LS    P   V+ A++ A+ +    +  LD A      MK S
Sbjct: 106 MGKQGQLRLASWIFSQLQLSSRTTP---VFNAIIMAHLRCKNVARALDSALDHFGHMKTS 162

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKF 116
           V  C P + TY++L ++C +    D  E +  E+     ++  A T+N I+D Y K   +
Sbjct: 163 VHSC-PSLATYNMLTRACAQAGLTDKAEALFLELLRRDDLKPDAYTFNGIMDAYAKKGLY 221

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLN 175
            +ME     M E G   PD+ T N +I AYG +G+  KME+ Y    NL G K    T N
Sbjct: 222 RDMEYKLKEMSEHG-VRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFN 280

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +  SYG++    KM  V+  M      P + T+N ++ ++G+AG ++ M + F KM   
Sbjct: 281 SMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELDTMRKCFDKMVRS 340

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            +KP   T   L+ AY++ GL+ + +++       D+      +  +  AYG+   ++KM
Sbjct: 341 PVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKLDIKPAVSSYLILFKAYGEERQLDKM 400

Query: 296 GELFLTMKE 304
             L   M++
Sbjct: 401 TVLMSKMEQ 409



 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F+ M+   +KP V     L+ AY + GL+DEA +   +   + D KP V +Y IL K+  
Sbjct: 334 FDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAEALFINASKL-DIKPAVSSYLILFKAYG 392

Query: 77  KFHRFDLIEKILAEMSYLGIE 97
           +  + D +  ++++M   G+E
Sbjct: 393 EERQLDKMTVLMSKMEQSGVE 413


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 159/328 (48%), Gaps = 1/328 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + ++ ++A   FE M   G +PS+  Y  ++  YG+ G   E    + +       +P
Sbjct: 127 LSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQP 186

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D YTY+  I +C      +   ++  +M         VTYN ++D YGKA  + E  +  
Sbjct: 187 DEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVL 246

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ES GC P+I T N ++SA+G +G      +  +     G++ D+ T   L  +Y R
Sbjct: 247 KEM-ESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSR 305

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  ++   + + M+     P   T+N +I   GK  +  +M   F+ M+  G++P+ +T
Sbjct: 306 AGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVT 365

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + SL+ A+ K G+  +V  + R ++ +    D   FN +I AYG+ G  ++   ++  M 
Sbjct: 366 WNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGML 425

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQ 331
           +  C PD  TF T++ A    G  E A+
Sbjct: 426 QAGCTPDLATFNTLLAALAREGRWEHAE 453



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 159/328 (48%), Gaps = 2/328 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK     +A+ + + M S G  P++  Y  L+SA+G++GL + A    + M S    +PD
Sbjct: 234 GKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVS-KGIEPD 292

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V+TY+ L+ + ++  + +   +I  +M       ++ T+N +I  +GK K F EM   F 
Sbjct: 293 VFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFE 352

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M ++ G  PDI T NS++ A+G +G   ++ K +      G + D  T NIL ++YGR 
Sbjct: 353 DM-QACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRC 411

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D+  S+ D M +    P + T+N ++    + G  E  E    ++     KPN I Y
Sbjct: 412 GSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAY 471

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            S++ AY+  G + K+  ++  +    V          +  Y +   V++  + FL M+ 
Sbjct: 472 ASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRH 531

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQN 332
              + D  TF  MI  Y   GM + A +
Sbjct: 532 HGYLSDTSTFNAMISMYGKKGMMDKATD 559



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 167/333 (50%), Gaps = 5/333 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A+ LF  M S    P    Y AL+  YG++G  +EA + + +M+S + C P++ TY+ 
Sbjct: 205 EEATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMES-AGCLPNIVTYNE 263

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +    +   ++   M   GIE    TY +++  Y +A K E+    ++ M  + 
Sbjct: 264 LLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQM-RTS 322

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P+ FT N++I  +G + N  +M   + +    GV+ DI T N L  ++G+ GMY ++
Sbjct: 323 NCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEV 382

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V   M+K  F P   T+NI+IE +G+ G  ++    +  M   G  P+  T+ +L++A
Sbjct: 383 LKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAA 442

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            ++ G     + IL ++  S    +   +  ++ AY   G++EK+ E+  T+   +    
Sbjct: 443 LAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFT 502

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
            I   T +  Y+   + + A   E+  +AM+ +
Sbjct: 503 KILLKTFVLVYSKCSLVDEA---EDAFLAMRHH 532



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 167/346 (48%), Gaps = 17/346 (4%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +LG+  Q    S LF+ +  +G    V  YT+L+SA  ++    EA      MK    
Sbjct: 89  LRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGP 148

Query: 61  CKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            +P + TY+++I    K  R ++ I ++  EM   GI+    TYNT I         EE 
Sbjct: 149 -QPSLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEA 207

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE-FNLM------GVKADIQ 172
              F+ M +S  C PD  T N+++  YG +G       WYNE  N++      G   +I 
Sbjct: 208 TELFTQM-KSSNCTPDRVTYNALLDVYGKAG-------WYNEAANVLKEMESAGCLPNIV 259

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T N L  ++GRAG+ +    + D M  +   P V TY  ++  + +AG +E+  E + +M
Sbjct: 260 TYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQM 319

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           +     PNS T+ +L+  + K     ++  I   ++   V  D   +N ++ A+G+ G  
Sbjct: 320 RTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMY 379

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            ++ ++F  MK+    PD  TF  +I+AY   G ++ A ++ + M+
Sbjct: 380 SEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGML 425



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 164/392 (41%), Gaps = 70/392 (17%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            G+      A+ + + M+S G++P V  YT+L+SAY ++G +++A    N M++ S+C P
Sbjct: 268 FGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRT-SNCTP 326

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           + +T++ LI    K   F  +  I  +M   G+E   VT+N+++  +GK   + E+   F
Sbjct: 327 NSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVF 386

Query: 124 SAMVESG----------------------------------GCHPDIFTLN--------- 140
             M ++G                                  GC PD+ T N         
Sbjct: 387 RGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALARE 446

Query: 141 --------------------------SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
                                     SM+ AY N G +EK+++  +  + + V      L
Sbjct: 447 GRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILL 506

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
                 Y +  + D+       M+   +     T+N +I  +GK G ++K  + F  ++ 
Sbjct: 507 KTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRS 566

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G++P+ +TY  L+  Y + G+  K ++ LR+   +    D   +N +I +Y + G +  
Sbjct: 567 TGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSS 626

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGM 326
              +F  M      PD+ T+ T +  Y   GM
Sbjct: 627 ATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGM 658



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 150/329 (45%), Gaps = 37/329 (11%)

Query: 34  ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT-------------------------- 67
           +++   G+ G  ++A    N M+   + +PD  T                          
Sbjct: 51  SIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLRE 110

Query: 68  ---------YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG-KAKKFE 117
                    Y+ LI + ++  +F        +M   G + S VTYN IID YG K + +E
Sbjct: 111 EGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWE 170

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
            +   F  M ++ G  PD +T N+ I+A  +    E+  + + +        D  T N L
Sbjct: 171 NILELFEEM-KAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNAL 229

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              YG+AG Y++  +V+  M+     P +VTYN ++  FG+AG      E    M  +G+
Sbjct: 230 LDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGI 289

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +P+  TY SL+SAYS+AG + +   I  Q+  S+   ++  FN +I  +G+  +  +M  
Sbjct: 290 EPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMV 349

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGM 326
           +F  M+     PD +T+ +++ A+   GM
Sbjct: 350 IFEDMQACGVEPDIVTWNSLLGAFGKNGM 378



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 143/323 (44%), Gaps = 37/323 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  M   G +P    +  L+ AYG+ G  D+A S  + M   + C PD+ T++ L+ + 
Sbjct: 385 VFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQ-AGCTPDLATFNTLLAAL 443

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEM------------- 119
            +  R++  E IL E++    + + + Y +++  Y   G+ +K +EM             
Sbjct: 444 AREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTK 503

Query: 120 -------------------ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
                              E +F AM   G    D  T N+MIS YG  G ++K    + 
Sbjct: 504 ILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLS-DTSTFNAMISMYGKKGMMDKATDTFA 562

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
                G++ D+ T N L   YGR GMY K  + +         P +V+YN VI ++ K G
Sbjct: 563 LLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHG 622

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            +      F +M   G++P+S TY + V  Y   G+  +  S+++ +  +    D   + 
Sbjct: 623 QLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYR 682

Query: 281 CIISAYGQAGDVEKMGELFLTMK 303
            ++ AY + G  E++  +   +K
Sbjct: 683 TLVDAYCKIGKFEEVERILKFIK 705



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 117/236 (49%), Gaps = 1/236 (0%)

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
           +I+ G G+  ++ +    F+ M +S    PD  T+  M+   G    +  + + +     
Sbjct: 51  SIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFKSLRE 110

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-IE 223
            G   D+     L  +  R   + +     + M++    P++VTYN++I+ +GK G   E
Sbjct: 111 EGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWE 170

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
            + E F++MK +G++P+  TY + ++A +   L  +   +  Q+++S+   D   +N ++
Sbjct: 171 NILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALL 230

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             YG+AG   +   +   M+   C+P+ +T+  ++ A+   G+  AA  +++ M++
Sbjct: 231 DVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVS 286



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 90/198 (45%), Gaps = 2/198 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++  KC   ++A   F  M   G       + A++S YG+ G++D+A  T   ++S + 
Sbjct: 510 VLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRS-TG 568

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            +PDV TY+ L+    +   +   E  L E    G     V+YNT+I  Y K  +     
Sbjct: 569 LEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSSAT 628

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  MV S G  PD FT N+ +  Y N G   +        +  G K D  T   L  +
Sbjct: 629 RIFHEMV-SNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVDA 687

Query: 181 YGRAGMYDKMRSVMDFMQ 198
           Y + G ++++  ++ F++
Sbjct: 688 YCKIGKFEEVERILKFIK 705


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 170/372 (45%), Gaps = 39/372 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM------- 55
           +LG+ +  E  SLL E M ++G  P +  +  ++    + G ++ AF  +++M       
Sbjct: 146 LLGQGRSKEAFSLL-EQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGL 204

Query: 56  -------KSVSD----------------------CKPDVYTYSILIKSCTKFHRFDLIEK 86
                   SV D                      C+P+V TYS LI   +K  + D   +
Sbjct: 205 SPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQ 264

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +LA+M  LG   + VTY+T++DG  K  + E+       M ++G C PD  T N++I  +
Sbjct: 265 LLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAG-CLPDAVTYNTLIDGF 323

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
                + +      E    G    + T   L     R+G +D+   ++D+M  R   P  
Sbjct: 324 FKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNA 383

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           +TY+ +++   KAG + +   YF+KM +   + P+ I Y +L+    KAG I +    L 
Sbjct: 384 ITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLE 443

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++  +  I D   F+ +I+    AG ++   ELF  M ER CVPD +T+AT++       
Sbjct: 444 RMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRAS 503

Query: 326 MTEAAQNLENKM 337
             + A +L  +M
Sbjct: 504 RVDEAFDLFQQM 515



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 155/346 (44%), Gaps = 10/346 (2%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK+     A  +F+  L  G +P+V  Y+ L+    +   +DEA   +  M  + 
Sbjct: 214 VLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG 273

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C+ +  TYS ++    K  R +    +L +M   G    AVTYNT+IDG+ K ++  E 
Sbjct: 274 -CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREA 332

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 M+E+G  HP + T  ++      SG  ++  +  +     G   +  T + +  
Sbjct: 333 VGLLREMLEAG-FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVD 391

Query: 180 SYGRAGMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
              +AG   +     + M +     P V+ Y+ +I+   KAG I++  E+ ++M   G  
Sbjct: 392 GLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRI 451

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ +T+  L++    AG I     + R +     + D   +  ++    +A  V++  +L
Sbjct: 452 PDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDL 511

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           F  M+     PD  T  TMI      G+ E  ++ + K I  +ENS
Sbjct: 512 FQQMRSDGLSPDRSTRRTMIH-----GLLEVNRDEDAKRIQDEENS 552



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 158/343 (46%), Gaps = 13/343 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK ++ ++A  LFE   + G  P+V  Y  ++    + G ++ A +  +DM      +P
Sbjct: 40  LGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRP 99

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID---GYGKAKKFEEME 120
            V TYS LI    + H  D   K+L EM+  G   +AVTYNT+++   G G++K+     
Sbjct: 100 TVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKE----- 154

Query: 121 SSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNI 176
            +FS +  + + GC P++ T   +I      G IE   +  +E  ++  G+  D+ T N 
Sbjct: 155 -AFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNS 213

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +     +        +V     +R   P VVTY+ +I+   K   +++  +   KM   G
Sbjct: 214 VLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELG 273

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
            + N++TY ++V    K G +     +LRQ+ ++  + D   +N +I  + +   + +  
Sbjct: 274 CRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAV 333

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            L   M E    P  +T+ T+       G  + A  + + M A
Sbjct: 334 GLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAA 376



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 149/321 (46%), Gaps = 5/321 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ ++A  LF+ M+   + P V  Y AL+   G+   + EA+    + ++   C P
Sbjct: 5   LCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARA-KGCHP 63

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMS-YLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            V TY+ +I    K  R +    +  +M+ + G   + VTY+T+IDG  +  + ++    
Sbjct: 64  TVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKL 123

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M    GC P+  T N++++A    G  ++      +    G   ++ T  ++ K   
Sbjct: 124 LEEMA-GRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLC 182

Query: 183 RAGMYDKMRSVMD--FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + G  +    V+D  FM +    P V+T+N V++   K   I      FK+   RG +PN
Sbjct: 183 KEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPN 242

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY +L+   SK   + +   +L ++       +T  ++ ++    + G +E    +  
Sbjct: 243 VVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLR 302

Query: 301 TMKERHCVPDNITFATMIQAY 321
            M++  C+PD +T+ T+I  +
Sbjct: 303 QMRDAGCLPDAVTYNTLIDGF 323



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 116/276 (42%), Gaps = 10/276 (3%)

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    K  + D    +  +M    I    VTY  +IDG GK ++ +E    F     + 
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEE-ARAK 59

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-MGVKADIQTLNILTKSYGRAGMYDK 189
           GCHP + T N+MI      G IE     Y++  +  G +  + T + L     R    DK
Sbjct: 60  GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDK 119

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              +++ M  R   P  VTYN ++      G  ++     ++M   G  P  IT+  ++ 
Sbjct: 120 GCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIK 179

Query: 250 AYSKAGLIMKVDSILRQVEN-----SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
              K G   ++++  R V+      S +  D   FN ++    +   +     +F    E
Sbjct: 180 GLCKEG---EIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALE 236

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           R C P+ +T++T+I   + +   + A  L  KM+ +
Sbjct: 237 RGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVEL 272


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 165/341 (48%), Gaps = 2/341 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV  GK +  E    L E M S GLKP++  YT  +   G++G +DEA   +  M+    
Sbjct: 236 MVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMED-DG 294

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C PDV TY++LI +     + D   ++  +M     +   VTY T++D +        ++
Sbjct: 295 CGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVK 354

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +S M E+ G  PD+ T   +++A   +GNI++     +     GV  ++ T N L   
Sbjct: 355 EFWSEM-EADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISG 413

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             R    D    + + M+     PT  TY + I+ +GK+G  +K  E F+KMK RG+ PN
Sbjct: 414 LLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPN 473

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +   + + + ++ G + +   I  +++++ +  D+  +N ++  Y +AG V++  EL  
Sbjct: 474 IVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLS 533

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            M E  C PD I   ++I      G  + A  +  ++  MK
Sbjct: 534 DMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMK 574



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 155/317 (48%), Gaps = 8/317 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ K+       +  M +DG  P V  +T LV+A  ++G +DEAF  ++ M+      P
Sbjct: 350 LGRVKE------FWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRK-QGVLP 402

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +++TY+ LI    + +R D    +   M  LG+  +A TY   ID YGK+ + ++   +F
Sbjct: 403 NLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETF 462

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M +  G  P+I   N+ + +    G + + +  +N     G+  D  T N++ K Y +
Sbjct: 463 EKM-KIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSK 521

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  D+   ++  M +    P ++  N +I T  KAG +++  + F ++K   + P  +T
Sbjct: 522 AGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVT 581

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L++   K G + +   +   +  +    +T  FN I+    +  +V+   ++   M 
Sbjct: 582 YNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMT 641

Query: 304 ERHCVPDNITFATMIQA 320
             +C+PD +TF T+I  
Sbjct: 642 TMNCMPDVLTFNTIIHG 658



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 147/307 (47%), Gaps = 2/307 (0%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E A  LF  M + G  P V  Y  L+ A+G+SG ++E F     M   S CKP+  T++I
Sbjct: 807  EMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQM-ICSSCKPNTITHNI 865

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            +I +  K +  D    +  ++       +  TY  ++DG  K+ + EE +  F  MV+  
Sbjct: 866  IIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDY- 924

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            GC P+    N +I+ +G +G++    + +      G++ D+++   L      AG  D  
Sbjct: 925  GCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDA 984

Query: 191  RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
                + +++   +   + YN++I+  G++  IE+    + +M+ RG+ P+  TY SL+  
Sbjct: 985  LHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILN 1044

Query: 251  YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               AG++ +   +  +++   +  +   +N +I  Y  +G+ +    ++  M    C P+
Sbjct: 1045 LGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPN 1104

Query: 311  NITFATM 317
              TFA +
Sbjct: 1105 TGTFAQL 1111



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 2/251 (0%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            GK  +  +   L+E M+    KP+   +  +++   +S  LD+A     D+ S  D  P 
Sbjct: 836  GKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVS-GDFSPT 894

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              TY  L+    K  R +  +++  EM   G   +   YN +I+G+GK          F 
Sbjct: 895  PCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFK 954

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             MV   G  PD+ +  S++     +G ++    ++ +    G+  D    N++    GR+
Sbjct: 955  RMVRE-GIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRS 1013

Query: 185  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
               ++  ++ D MQ R   P + TYN +I   G AG +E+  + +++++  G++PN  TY
Sbjct: 1014 HRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTY 1073

Query: 245  CSLVSAYSKAG 255
             +L+  YS +G
Sbjct: 1074 NALIRGYSMSG 1084



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 132/278 (47%), Gaps = 5/278 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILA--EMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           K D+ TY I+ K    F R  L +   A  +M   G   +A +YN +I    ++    E 
Sbjct: 156 KRDLNTYLIIFKGL--FIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGLCREA 213

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              +  MV  G   P + T ++++ A G   + E ++    E   +G+K +I T  I  +
Sbjct: 214 LEMYRRMVLEG-LKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIR 272

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
             GRAG  D+   +M  M+     P VVTY ++I+    AG ++   E F KMK    KP
Sbjct: 273 VLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKP 332

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +TY +++  +S  G + +V     ++E      D   F  +++A  +AG++++   L 
Sbjct: 333 DRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLL 392

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             M+++  +P+  T+ T+I     +   + A +L N M
Sbjct: 393 DVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNM 430



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 155/316 (49%), Gaps = 2/316 (0%)

Query: 24   GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
            G+KP+++ Y  L+  +      + A++   +MK+ + C PDV+TY++L+ +  K  + + 
Sbjct: 785  GVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKN-AGCAPDVFTYNLLLDAHGKSGKINE 843

Query: 84   IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            + ++  +M     + + +T+N II    K+   ++    F  +V SG   P   T   ++
Sbjct: 844  LFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLV-SGDFSPTPCTYGPLL 902

Query: 144  SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 SG +E+ ++ + E    G + +    NIL   +G+ G  +    +   M +    
Sbjct: 903  DGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIR 962

Query: 204  PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
            P + +Y  ++    +AG ++    YF+K+K  G+  +SI Y  ++    ++  I +  ++
Sbjct: 963  PDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTL 1022

Query: 264  LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              ++++  +  D   +N +I   G AG VE+ G+L+  ++     P+  T+  +I+ Y+ 
Sbjct: 1023 YDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSM 1082

Query: 324  LGMTEAAQNLENKMIA 339
             G +++A  +  +M+ 
Sbjct: 1083 SGNSDSAYAVYKRMMV 1098



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 128/287 (44%), Gaps = 38/287 (13%)

Query: 94   LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153
            LG++ +  +YN +I+G+      E   + F+ M ++ GC PD+FT N ++ A+G SG I 
Sbjct: 784  LGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEM-KNAGCAPDVFTYNLLLDAHGKSGKIN 842

Query: 154  KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT----- 208
            ++ + Y +      K +  T NI+  +  ++   DK   +   +    F PT  T     
Sbjct: 843  ELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLL 902

Query: 209  ------------------------------YNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                                          YNI+I  FGK G +    E FK+M   G++
Sbjct: 903  DGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIR 962

Query: 239  PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            P+  +Y SLV    +AG +        +++ + + LD+  +N +I   G++  +E+   L
Sbjct: 963  PDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTL 1022

Query: 299  FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL--ENKMIAMKEN 343
            +  M+ R   PD  T+ ++I      GM E A  L  E + I ++ N
Sbjct: 1023 YDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPN 1069



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 155/372 (41%), Gaps = 40/372 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + ++A  +F  +    L P+V  Y  L++  G+ G +  A      M   + C P
Sbjct: 554 LYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTG-NGCPP 612

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  T++ ++    K    DL  K+L +M+ +      +T+NTII G    K+  +    F
Sbjct: 613 NTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLF 672

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTL-----NIL 177
             M +     PD  TL +++     +G +E   K   +F + +GV  D +        IL
Sbjct: 673 HQMKKM--LTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGIL 730

Query: 178 TKS-------YGR---AGMYDKMRSVM---------------------DFMQKRFFFPTV 206
           T++       +G     G   K  SV+                      F ++    PT+
Sbjct: 731 TQAGTEKTILFGDRLVCGRVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTL 790

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            +YN +IE F    + E     F +MK+ G  P+  TY  L+ A+ K+G I ++  +  Q
Sbjct: 791 ESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQ 850

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +  S    +T   N II+   ++  ++K  +LF  +      P   T+  ++      G 
Sbjct: 851 MICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGR 910

Query: 327 TEAAQNLENKMI 338
            E A+ L  +M+
Sbjct: 911 LEEAKELFEEMV 922



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 96/225 (42%)

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           II    K K+    +S F    +  G  P + + N +I  +    N E     + E    
Sbjct: 760 IIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNA 819

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G   D+ T N+L  ++G++G  +++  + + M      P  +T+NI+I    K+  ++K 
Sbjct: 820 GCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKA 879

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
            + F  +      P   TY  L+    K+G + +   +  ++ +     +   +N +I+ 
Sbjct: 880 LDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILING 939

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +G+ GDV    ELF  M      PD  ++ +++      G  + A
Sbjct: 940 FGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDA 984



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 83/181 (45%), Gaps = 3/181 (1%)

Query: 162 FNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
           FNLM    +K D+ T  I+ K     G   +       M++  F     +YN +I    +
Sbjct: 147 FNLMQNQIIKRDLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQ 206

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
           +G   +  E +++M   G+KP+  T+ +L+ A  K      V S+L ++E+  +  +   
Sbjct: 207 SGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYT 266

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +   I   G+AG +++   +   M++  C PD +T+  +I A    G  + A  L  KM 
Sbjct: 267 YTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMK 326

Query: 339 A 339
           A
Sbjct: 327 A 327


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 156/315 (49%), Gaps = 2/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G  PSV  Y A++ A   + L   A   ++ M       P+VYTY+IL+++     R + 
Sbjct: 113 GYAPSVPAYNAVLLALSDASL-PSARRFLSSMLR-HGVAPNVYTYNILVRALCARGRLEE 170

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              ++ +M   G   +AVTYNT++  + +A + +  E   S M E G   P++ T NSM+
Sbjct: 171 AVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMV 230

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           +    +G +E   K ++E    G+  D+ + N L   Y + G   +  +V   M +R   
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLV 290

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVT+  +I    KAG++E+      +M+ RG++ N +T+ +L+  + K G +      
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           + ++    +      +N +I+ Y + G ++   EL   M+ +   PD +T++T+I  Y  
Sbjct: 351 VEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCK 410

Query: 324 LGMTEAAQNLENKMI 338
           +G  ++A  L  KM+
Sbjct: 411 VGNLDSAFQLNQKML 425



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 159/328 (48%), Gaps = 1/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +   M   G  P+   Y  LV+A+ ++G LD A   ++ M+   + KP++ T++ 
Sbjct: 169 EEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNS 228

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K  R +   K+  EM   G+    V+YNT++ GY K     E  + FS M + G
Sbjct: 229 MVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRG 288

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T  S+I A   +GN+E+      +    G++ +  T   L   + + G  D  
Sbjct: 289 LV-PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 347

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              ++ M+K    P+VV YN +I  + K G ++   E  ++M+ + +KP+ +TY +++S 
Sbjct: 348 LLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISG 407

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K G +     + +++    V+ D   ++ +I    +   +    ELF  M +    PD
Sbjct: 408 YCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 467

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
             T+ T+I  +   G  E A +L ++MI
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMI 495



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 146/316 (46%), Gaps = 4/316 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E A  +F+ M+ +GL P V  Y  L+S Y + G L E+ +  ++M       
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ-RGLV 290

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV T++ LI +  K    +    ++A+M   G+  + VT+  +IDG+ K    ++   +
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M +  G  P +   N++I+ Y   G ++   +   E     VK D+ T + +   Y 
Sbjct: 351 VEEMRKC-GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D    +   M K+   P  +TY+ +I    +   +    E F+ M   G++P+  
Sbjct: 410 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 469

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+  + K G + K  S+  ++    V+ D   ++ +I+   ++   ++   L   +
Sbjct: 470 TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL 529

Query: 303 KERHCVPDNITFATMI 318
                VPDNI +  ++
Sbjct: 530 YHEDPVPDNIKYDALM 545



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 148/337 (43%), Gaps = 17/337 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           EQA  L   M   GL+ +   +TAL+  + + G LD+A   + +M+     +P V  Y+ 
Sbjct: 310 EQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG-IQPSVVCYNA 368

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  R DL  +++ EM    ++   VTY+TII GY K    +        M++ G
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T +S+I        +    + +     +GV+ D  T   L   + + G  +K 
Sbjct: 429 -VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKA 487

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            S+ D M ++   P VVTY+++I    K+   ++      K+ H    P++I Y +L+  
Sbjct: 488 LSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLC 547

Query: 251 YSKA---------------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            SKA               GL+ + D + + + + +  LD   ++ +I  + + G+V K 
Sbjct: 548 CSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKA 607

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
                 M      P++ +  ++++     GM   A N
Sbjct: 608 LSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADN 644



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 132/315 (41%), Gaps = 54/315 (17%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   + A L  E M   G++PSV  Y AL++ Y + G +D A   I +M++    K
Sbjct: 337 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA-KRVK 395

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TYS +I    K    D   ++  +M   G+   A+TY+++I G  + K+  +    
Sbjct: 396 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL 455

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT---- 178
           F  M++ G   PD FT  ++I  +   GN+EK    ++E    GV  D+ T ++L     
Sbjct: 456 FENMLQLG-VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLS 514

Query: 179 ----------------------------------------------KSYGRAGMYDKMRS 192
                                                         K +   G+  +   
Sbjct: 515 KSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADK 574

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V   M  R +      Y+I+I    + G++ K   + K+M   G  PNS +  SLV    
Sbjct: 575 VYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLF 634

Query: 253 KAGLIMKVDSILRQV 267
           + G++++ D+ ++ +
Sbjct: 635 EEGMVVEADNAIQDL 649


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 163/353 (46%), Gaps = 37/353 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  + + A L+F+  +  G   +V VY++L+ AYG+SG L +A      MK V  CKP
Sbjct: 131 LGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMKVV--CKP 188

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++  Y+ +I +C+K   +    +I  EM   G+    +T+NT+I   G+A ++EE +  F
Sbjct: 189 NLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIF 248

Query: 124 SAMVESG-----------------------------------GCHPDIFTLNSMISAYGN 148
           + M E G                                   G  P + T ++MI  Y  
Sbjct: 249 AEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAK 308

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G   +    + E     V+ D    N +   + R G +D+  S+   M++  F   +VT
Sbjct: 309 LGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVT 368

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +++++GK G   +     ++MK RG  PN +TY +L+ AY K G      ++ + V+
Sbjct: 369 YNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVK 428

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            + +  D   ++ ++    + G  ++   L   M +    P+ IT+ +++ AY
Sbjct: 429 KAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAY 481



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 148/343 (43%), Gaps = 15/343 (4%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  + E+   +F  M   G+      Y  L++ Y + G +    + +  M   S  +P 
Sbjct: 236 GRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPS 295

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TYS +I    K         +  EM    +E   + YNT++D + +   F+E  S   
Sbjct: 296 VITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRR 355

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           AM E  G   DI T N+++ +YG  G   +      E    G   +I T + L  +Y + 
Sbjct: 356 AM-EEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKH 414

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G +    ++   ++K    P VV Y+ +++   K G  ++     ++M   G++PN ITY
Sbjct: 415 GFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITY 474

Query: 245 CSLVSAYSKAGLIMKVD------SILRQVENSDVILDTPFFN----CIISAYGQAGDVEK 294
            SL+ AY +  L+++ +       +L +V     +L  P  +     ++    +   V  
Sbjct: 475 NSLLDAYGRQCLMVRKNFPKLRFFLLPRV----TMLLKPSVDYDQQSLVDPKQKQALVLA 530

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              +F  M +    P+ +TF++++ A +     E A +L   M
Sbjct: 531 AARVFREMAKNGVKPNVVTFSSILNACSHCASVEDASSLLEAM 573


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 163/353 (46%), Gaps = 37/353 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  + + A L+F+  +  G   +V VY++L+ AYG+SG L +A      MK V  CKP
Sbjct: 130 LGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMKVV--CKP 187

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++  Y+ +I +C+K   +    +I  EM   G+    +T+NT+I   G+A ++EE +  F
Sbjct: 188 NLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIF 247

Query: 124 SAMVESG-----------------------------------GCHPDIFTLNSMISAYGN 148
           + M E G                                   G  P + T ++MI  Y  
Sbjct: 248 AEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAK 307

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G   +    + E     V+ D    N +   + R G +D+  S+   M++  F   +VT
Sbjct: 308 LGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVT 367

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +++++GK G   +     ++MK RG  PN +TY +L+ AY K G      ++ + V+
Sbjct: 368 YNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVK 427

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            + +  D   ++ ++    + G  ++   L   M +    P+ IT+ +++ AY
Sbjct: 428 KAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAY 480



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 144/346 (41%), Gaps = 21/346 (6%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  + E+   +F  M   G+      Y  L++ Y + G +    + +  M   S  +P 
Sbjct: 235 GRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPS 294

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TYS +I    K         +  EM    +E   + YNT++D + +   F+E  S   
Sbjct: 295 VITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRR 354

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           AM E  G   DI T N+++ +YG  G   +      E    G   +I T + L  +Y + 
Sbjct: 355 AM-EEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKH 413

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G +    ++   ++K    P VV Y+ +++   K G  ++     ++M   G++PN ITY
Sbjct: 414 GFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITY 473

Query: 245 CSLVSAYSKAGLIM-------------KVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
            SL+ AY +  L++             +V  +L+     D          ++    +   
Sbjct: 474 NSLLDAYGRQCLMVRKTFPKLRFFLLPRVTMLLKPSMQDDQ-------QSLVDPKQKQAL 526

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           V     +F  M +    P+ +TF++++ A +     E A NL   M
Sbjct: 527 VLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDASNLLEAM 572


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/371 (27%), Positives = 173/371 (46%), Gaps = 38/371 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+    E+   +F+ M S G+ PSV  +TAL++AYG++G    +   ++ MK      
Sbjct: 155 VLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKK-ERVS 213

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNT---------------- 105
           P + TY+ +I SC +    ++ +  + A+M + GI+   VTYNT                
Sbjct: 214 PSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEM 273

Query: 106 -------------------IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
                              +++ +GK  + E++      M ESGG  PDI + N ++ A+
Sbjct: 274 VFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEM-ESGGSFPDITSYNVLLEAH 332

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             SG+I++    + +    G   +  T +IL   YGR G YD +R +   M+     P  
Sbjct: 333 AQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNA 392

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TYNI+I  FG+ G+ +++   F  M    ++PN  TY  L+ A  K GL      IL  
Sbjct: 393 ATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLH 452

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +    V+  +  +  +I AYGQA   E+    F TM E    P   T+ ++IQ +   G+
Sbjct: 453 MNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGL 512

Query: 327 TEAAQNLENKM 337
            + ++ +  KM
Sbjct: 513 YKESEAILLKM 523



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 156/338 (46%), Gaps = 2/338 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK  + E+ S L + M S G  P +  Y  L+ A+ QSG + EA      M+  + C P
Sbjct: 297 FGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQG-AGCVP 355

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TYSIL+    +  R+D +  +  EM     E +A TYN +I+ +G+   F+E+ + F
Sbjct: 356 NAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLF 415

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MVE     P++ T   +I A G  G  E  +K     N  GV    +    + ++YG+
Sbjct: 416 HDMVEEN-VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQ 474

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A +Y++     + M +    PTV TYN +I+ F K G  ++ E    KM   G+  N  T
Sbjct: 475 AALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDT 534

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           +  ++ A+ + G   +      ++E +    D      ++S Y  AG VE+  E F  +K
Sbjct: 535 FNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIK 594

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
               +P  + +  M+  Y      + A  L ++M   +
Sbjct: 595 ALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNR 632



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 160/354 (45%), Gaps = 43/354 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILI 72
           LF  M  +G++  +  Y  L+SA  + GL DEA   F T+N+        PD+ TYS L+
Sbjct: 239 LFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNE----GGILPDITTYSYLV 294

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
           ++  K +R + + ++L EM   G      +YN +++ + ++   +E    F  M +  GC
Sbjct: 295 ETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQM-QGAGC 353

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG---------- 182
            P+  T + +++ YG  G  + +   + E  +   + +  T NIL   +G          
Sbjct: 354 VPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVT 413

Query: 183 -------------------------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
                                    + G+++  + ++  M ++   P+   Y  VIE +G
Sbjct: 414 LFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYG 473

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           +A   E+    F  M   G KP   TY SL+  ++K GL  + ++IL ++  S V  +  
Sbjct: 474 QAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRD 533

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
            FN +I A+ Q G  E+  + ++ M++  C PD  T   ++  Y   G+ E ++
Sbjct: 534 TFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESE 587



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 159/309 (51%), Gaps = 3/309 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+  +YT ++   G+ GLL++     ++M S     P V++++ LI +  +  ++    
Sbjct: 143 KPNEHIYTIMIGVLGREGLLEKCQEIFDEMPS-HGVAPSVFSFTALINAYGRNGQYKSSL 201

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           ++L  M    +  S +TYNT+I+   +    +EE+   F+ M    G   DI T N+++S
Sbjct: 202 ELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHE-GIQADIVTYNTLLS 260

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A    G  ++ E  +   N  G+  DI T + L +++G+    +K+  ++  M+    FP
Sbjct: 261 ACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFP 320

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            + +YN+++E   ++G I++    F++M+  G  PN+ TY  L++ Y + G    V  + 
Sbjct: 321 DITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLF 380

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            +++ S+   +   +N +I+ +G+ G  +++  LF  M E +  P+  T+  +I A    
Sbjct: 381 LEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKG 440

Query: 325 GMTEAAQNL 333
           G+ E A+ +
Sbjct: 441 GLHEDAKKI 449



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 154/314 (49%), Gaps = 2/314 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           K S++ +  +   + Q G    +      M+    CKP+ + Y+I+I    +    +  +
Sbjct: 107 KLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQ 166

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           +I  EM   G+  S  ++  +I+ YG+  +++        M +     P I T N++I++
Sbjct: 167 EIFDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKER-VSPSILTYNTVINS 225

Query: 146 YGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               G + E++   + +    G++ADI T N L  +  R G+ D+   V   M +    P
Sbjct: 226 CARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILP 285

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            + TY+ ++ETFGK   +EK+ E  K+M+  G  P+  +Y  L+ A++++G I +   + 
Sbjct: 286 DITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVF 345

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           RQ++ +  + +   ++ +++ YG+ G  + + +LFL MK  +  P+  T+  +I  +   
Sbjct: 346 RQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEG 405

Query: 325 GMTEAAQNLENKMI 338
           G  +    L + M+
Sbjct: 406 GYFKEVVTLFHDMV 419


>gi|356534408|ref|XP_003535747.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35130-like [Glycine max]
          Length = 357

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 151/278 (54%), Gaps = 8/278 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  +   A +LF  M +   KP++  YTALV+A+ + GL ++A      M+  +  +
Sbjct: 50  LYGKAGKSFMALILFHEMTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQE-AGLE 108

Query: 63  PDVYTYSILIKS---CTKFHRFDL---IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           PDVY Y+ L+++    + F R        +I + M ++G E    +YN ++D YGKA   
Sbjct: 109 PDVYAYNALMETYKFSSPFSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQ 168

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           ++ E+ F  M +  G  P + +   + SAY   GN+ K E+  N+    G+K +   L  
Sbjct: 169 DDAEAVFKDM-KRVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVLKS 227

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +   YGR G + KM  V+  M+K  +   + TYNI+I  +G+AG IE+ME++F+ +  +G
Sbjct: 228 MLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGXIERMEDFFQLLPSKG 287

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
           +KP+ +T+ S + AYS   L +K   I  +  ++ V+L
Sbjct: 288 LKPDVVTWTSRMGAYSXKKLYLKCLEIFEETIDAKVLL 325



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 148/302 (49%), Gaps = 8/302 (2%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           PS  VY A ++   + G  D+A      MK    CK    TY++LI    K  +  +   
Sbjct: 4   PSAVVYNAYINGLMKGGNSDKAEEIFKRMKK-DACKSTTETYTMLINLYGKAGKSFMALI 62

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  EM+    + +  TY  +++ + +    E+ E  F  M E+G   PD++  N+++  Y
Sbjct: 63  LFHEMTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAG-LEPDVYAYNALMETY 121

Query: 147 GNSGNIEKMEKWYNE---FNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
             S    +    Y     F+LM   G + D  + NIL  +YG+AG  D   +V   M++ 
Sbjct: 122 KFSSPFSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRV 181

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              PT+ ++ ++   + K G++ K EE   +M   G+K N+    S+++ Y + G   K+
Sbjct: 182 GITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVLKSMLNLYGRLGQFGKM 241

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           + +LR +E    + D   +N +I+ YGQAG +E+M + F  +  +   PD +T+ + + A
Sbjct: 242 EEVLRVMEKGSYVADISTYNILINRYGQAGXIERMEDFFQLLPSKGLKPDVVTWTSRMGA 301

Query: 321 YN 322
           Y+
Sbjct: 302 YS 303



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 130/282 (46%), Gaps = 17/282 (6%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P    Y+  I    K    D  E+I   M     + +  TY  +I+ YGKA K      S
Sbjct: 4   PSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKSTTETYTMLINLYGKAGK------S 57

Query: 123 FSAMV-----ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           F A++      +  C P+I T  ++++A+   G  EK E+ + +    G++ D+   N L
Sbjct: 58  FMALILFHEMTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNAL 117

Query: 178 TKSY------GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
            ++Y       RAG       +   MQ     P   +YNI+++ +GKAG  +  E  FK 
Sbjct: 118 METYKFSSPFSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKD 177

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           MK  G+ P   ++  L SAYSK G + K + IL Q+  S + L+T     +++ YG+ G 
Sbjct: 178 MKRVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVLKSMLNLYGRLGQ 237

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             KM E+   M++   V D  T+  +I  Y   G  E  ++ 
Sbjct: 238 FGKMEEVLRVMEKGSYVADISTYNILINRYGQAGXIERMEDF 279



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 6/211 (2%)

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
           +P     N+ I+     GN +K E+ +        K+  +T  +L   YG+AG       
Sbjct: 3   NPSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKSTTETYTMLINLYGKAGKSFMALI 62

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV---- 248
           +   M      P + TY  ++  F + G  EK EE F++M+  G++P+   Y +L+    
Sbjct: 63  LFHEMTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNALMETYK 122

Query: 249 --SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
             S +S+AG       I   +++     D   +N ++ AYG+AG  +    +F  MK   
Sbjct: 123 FSSPFSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVG 182

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             P   +   +  AY+ +G     + + N+M
Sbjct: 183 ITPTMKSHMVLQSAYSKMGNVNKCEEILNQM 213


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 160/360 (44%), Gaps = 34/360 (9%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  L   ML DG+ P+V  Y  LV A    G  +EA   + D    + C P+V TY+ L+
Sbjct: 138 ARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLV 197

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-- 130
            +  +    D  E+++  M   G+  S VT+NT+++G  KA + E+    F  M   G  
Sbjct: 198 AAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLT 257

Query: 131 ----------------GC-H---------------PDIFTLNSMISAYGNSGNIEKMEKW 158
                           GC H               PD+ T  S+I A   +GN+E+    
Sbjct: 258 PDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVAL 317

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             +    G++ +  T   L   + R G  D     M  M++    P+VV YN++I  + K
Sbjct: 318 VGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCK 377

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
            G +++  E   +M+ +GMKP+ +TY +++S Y K G       + R++    V+ D   
Sbjct: 378 LGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAIT 437

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++ +I    +   +    ELF  M +    PD  T+ T+I  +   G  + A +L ++MI
Sbjct: 438 YSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMI 497



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 157/316 (49%), Gaps = 4/316 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFD 82
           G  PS+  Y A++ A   + L   A   +  M       P+VYTY+IL+++ C +  R +
Sbjct: 115 GYAPSLLAYNAVLLALSDASL-PSARRLLASMLR-DGVAPNVYTYNILVRALCARGQREE 172

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
            +  +  +M   G   + VTYNT++  + +A + +  E     M E GG  P + T N++
Sbjct: 173 ALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMRE-GGVRPSLVTFNTV 231

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           ++    +G +E   K ++E    G+  D  + N L   Y +AG   +  +V   M ++  
Sbjct: 232 VNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGV 291

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P VVT+  +I    +AG++E+      +M+ RG++ N  T+ +L+  + + G +     
Sbjct: 292 VPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALL 351

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
            ++++    +      +N +I+ Y + G +++  EL   M+ +   PD +T++T++  Y 
Sbjct: 352 AMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYC 411

Query: 323 ALGMTEAAQNLENKMI 338
            +G T++A  L  KM+
Sbjct: 412 KIGDTDSAFELNRKML 427



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 148/322 (45%), Gaps = 8/322 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK  + E A  +F+ M  +GL P    Y  LVS Y ++G L EA +   +M    
Sbjct: 231 VVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQ-K 289

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PDV T++ LI +  +    +    ++ +M   G+  +  T+  +IDG+ +   F  +
Sbjct: 290 GVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCR-NGF--L 346

Query: 120 ESSFSAMVESGGC--HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           + +  AM E   C   P +   N +I+ Y   G +++  +  +E    G+K D+ T + +
Sbjct: 347 DDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTI 406

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              Y + G  D    +   M K+   P  +TY+ +I    +   +    E F+KM   G+
Sbjct: 407 LSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGL 466

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +P+  TY +L+  + K G + K  S+  ++    V+ D   ++ +I    ++   ++   
Sbjct: 467 QPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQR 526

Query: 298 LFLTMKERHCVPDNITFATMIQ 319
           L   +     VPDNI +  ++ 
Sbjct: 527 LLFKLYYEDPVPDNIKYEALMH 548



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 124/258 (48%), Gaps = 6/258 (2%)

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            ++LA M   G+  +  TYN ++       + EE        +   GC P++ T N++++
Sbjct: 139 RRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVA 198

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A+  +G ++  E+        GV+  + T N +     +AG  +  R + D M +    P
Sbjct: 199 AFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTP 258

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
             V+YN ++  + KAG + +    F +M  +G+ P+ +T+ SL+ A  +AG + +  +++
Sbjct: 259 DGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALV 318

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-RHCV--PDNITFATMIQAY 321
            Q+    + ++   F  +I  + + G ++   +  L MKE R C   P  + +  +I  Y
Sbjct: 319 GQMRERGLRMNEFTFTALIDGFCRNGFLD---DALLAMKEMRECRIQPSVVCYNVLINGY 375

Query: 322 NALGMTEAAQNLENKMIA 339
             LG  + A+ L ++M A
Sbjct: 376 CKLGRMDEARELIHEMEA 393



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 132/289 (45%), Gaps = 19/289 (6%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + ++A  L   M + G+KP V  Y+ ++S Y + G  D AF  +N         
Sbjct: 374 GYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFE-LNRKMLKKGVV 432

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TYS LI+   +  R     ++  +M  LG++    TY T+IDG+ K    ++  S 
Sbjct: 433 PDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSL 492

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK-----WYNEFNLMGVK--------- 168
              M++ G   PD+ T + +I     S   ++ ++     +Y +     +K         
Sbjct: 493 HDEMIKKG-VLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCR 551

Query: 169 -ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
            A+ +++  L K +   G+ ++   V   M  R +      Y+++I    + G+I K   
Sbjct: 552 TAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALS 611

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           + K++   G  PNS +  SLV    + G+ ++ D++++++ N   + D 
Sbjct: 612 FHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELLNCCSLADA 660


>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
           [Acanthamoeba castellanii str. Neff]
          Length = 559

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 163/334 (48%), Gaps = 8/334 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++ + +   M   G++P +  YT L+ A+G++G L   +    DM+     +P+
Sbjct: 109 GRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWEDMRE-QGLRPN 167

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEM---SYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           V  Y+ +I +  K      +E+  AEM   S  G+E +  TYN ++  YG+ +  ++ME+
Sbjct: 168 VVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYGQQQMMDKMEA 227

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               M    G   D FT +++++A+  +G ++K  + ++     G +  +     +    
Sbjct: 228 LVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGGQPSLHAWTAILHML 287

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G AG  D+M   +D M++    P+   YN +I  FGKA +I  M + FK M+  G+  + 
Sbjct: 288 GTAGRSDEMLRTLDKMKRLGVKPSTAVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADV 347

Query: 242 ITYCSLVSAYSKAGLIMKVDS--ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
            TY +L+  ++K G  ++ +   +L + E     + T     ++ AY +A   EK+  L 
Sbjct: 348 KTYNTLIDTWAKTGKAVEAEKFYVLMKREGLQPTMYT--IASLMDAYTRADQFEKVLRLI 405

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             MK+    PDN+ F  +I  Y  +G  E A+ +
Sbjct: 406 SRMKKEGRAPDNVVFNLLIDTYGRMGKPEEAEKV 439



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 160/325 (49%), Gaps = 5/325 (1%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS--DCKPDVYTYSILIKS 74
           +E M   GL+P+V VYT++++  G+ G +     T  +M+  S    +P+  TY+ ++ S
Sbjct: 156 WEDMREQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHS 215

Query: 75  CTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
             +    D +E ++  M +  G+     T++ ++  + +A + ++   +F ++  +GG  
Sbjct: 216 YGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGG-Q 274

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P +    +++   G +G  ++M +  ++   +GVK      N +  ++G+A     M   
Sbjct: 275 PSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNTIINAFGKARNIHSMMDT 334

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
              M++      V TYN +I+T+ K G   + E+++  MK  G++P   T  SL+ AY++
Sbjct: 335 FKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKREGLQPTMYTIASLMDAYTR 394

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL-TMKERHCVPDNI 312
           A    KV  ++ +++      D   FN +I  YG+ G  E+  ++    MKE     +  
Sbjct: 395 ADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGKPEEAEKVLCGAMKEYGIALETN 454

Query: 313 TFATMIQAYNALGMTEAAQNLENKM 337
            F ++I+A+   G  + A+   ++M
Sbjct: 455 NFTSVIEAWARNGNLDKAEEWLHRM 479



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 159/339 (46%), Gaps = 41/339 (12%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-- 80
           DG++P+   Y A+V +YGQ  ++D+  + +  M++      D +T+S ++ + ++  R  
Sbjct: 200 DGVEPNRTTYNAMVHSYGQQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVD 259

Query: 81  -----FDLIE----------------------------KILAEMSYLGIECSAVTYNTII 107
                FD I                             + L +M  LG++ S   YNTII
Sbjct: 260 KALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNTII 319

Query: 108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 167
           + +GKA+    M  +F AM    G   D+ T N++I  +  +G   + EK+Y      G+
Sbjct: 320 NAFGKARNIHSMMDTFKAM-RRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKREGL 378

Query: 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           +  + T+  L  +Y RA  ++K+  ++  M+K    P  V +N++I+T+G+ G  E+ E+
Sbjct: 379 QPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGKPEEAEK 438

Query: 228 YF-KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL--DTPFFNCIIS 284
                MK  G+   +  + S++ A+++ G + K +  L ++ N+D     D      ++S
Sbjct: 439 VLCGAMKEYGIALETNNFTSVIEAWARNGNLDKAEEWLHRM-NTDYATKPDIKTLTTLLS 497

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
               A DV K G   + M E+H +  +      I+ ++A
Sbjct: 498 FCIPAADV-KRGRRVIHMIEQHKLQKDKQARETIRQFHA 535



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 90/162 (55%), Gaps = 4/162 (2%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           ++  YG +G+ +++ +   +   +GV+  + T  IL  ++G+AG   +M    + M+++ 
Sbjct: 104 LLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWEDMREQG 163

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR---GMKPNSITYCSLVSAYSKAGLIM 258
             P VV Y  VI T GK G +  ME  F +M+     G++PN  TY ++V +Y +  ++ 
Sbjct: 164 LRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYGQQQMMD 223

Query: 259 KVDSIL-RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           K+++++ R   +  + LD    + +++A+ +AG V+K  E F
Sbjct: 224 KMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAF 265



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 88/164 (53%), Gaps = 4/164 (2%)

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           +   ++L + YGRAG   ++  V   M++    P + TY I+I+ +GKAG + +M + ++
Sbjct: 98  LAVFDVLLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWE 157

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD---VILDTPFFNCIISAYG 287
            M+ +G++PN + Y S+++   K G +  ++    +++ S    V  +   +N ++ +YG
Sbjct: 158 DMREQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYG 217

Query: 288 QAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAA 330
           Q   ++KM  L   M+    +  DN T + ++ A++  G  + A
Sbjct: 218 QQQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKA 261



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 2/162 (1%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F+ M  DG+   V  Y  L+  + ++G   EA      MK     +P +YT + L+ + T
Sbjct: 335 FKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKR-EGLQPTMYTIASLMDAYT 393

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           +  +F+ + ++++ M   G     V +N +ID YG+  K EE E      ++  G   + 
Sbjct: 394 RADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGKPEEAEKVLCGAMKEYGIALET 453

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNL-MGVKADIQTLNIL 177
               S+I A+  +GN++K E+W +  N     K DI+TL  L
Sbjct: 454 NNFTSVIEAWARNGNLDKAEEWLHRMNTDYATKPDIKTLTTL 495


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 166/382 (43%), Gaps = 48/382 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  L+  M   G+ P +  Y  ++  +  SG   EA   + +M       P
Sbjct: 259 LWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLE-RKINP 317

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TYS LI +  K  +F   E++  EM   GI  + +TYN++IDG+ K  + +  E  F
Sbjct: 318 NVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMF 377

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  + GC PD+FT N++I  Y  +  I+   +  +E    G+ AD  T N L   +  
Sbjct: 378 YVMA-TKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCL 436

Query: 184 AG------------------------------------------MYDKM-RSVMDFMQKR 200
            G                                          M+  M +S MD    R
Sbjct: 437 VGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASR 496

Query: 201 FFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
            F    P V TYNI+I      G   + EE +K+M HRG+ PN+ITY S+++   K   +
Sbjct: 497 PFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRL 556

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            +   +   + +     D   FN ++S Y +AG V+   ELF  M  R  V D IT+ T+
Sbjct: 557 DEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITL 616

Query: 318 IQAYNALGMTEAAQNLENKMIA 339
           I  +  +G    A ++  +MI+
Sbjct: 617 IHGFRKVGNINGALDIFQEMIS 638



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 154/348 (44%), Gaps = 18/348 (5%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ ML  G+ P+   Y +++  + +   LD A      M +   C PDV+T++ L
Sbjct: 337 EAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVM-ATKGCSPDVFTFNTL 395

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D   ++L EM+  G+     TYNT+I G+               M+ SG 
Sbjct: 396 IDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGV 455

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWY-------------NEFNLMGVKADIQTLNILT 178
           C PDI T N+++    ++G ++   + +               FN  GV+ D+QT NIL 
Sbjct: 456 C-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFN--GVEPDVQTYNILI 512

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                 G + +   +   M  R   P  +TY+ +I    K   +++  + F  M  +   
Sbjct: 513 SGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFS 572

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ +T+ +LVS Y KAG +     +  ++    ++ D   +  +I  + + G++    ++
Sbjct: 573 PDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDI 632

Query: 299 FLTMKERHCVPDNITFATMIQA-YNALGMTEAAQNLENKMIAMKENSG 345
           F  M      PD IT  +M+   ++   +  A   LE+  ++M  + G
Sbjct: 633 FQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQMSMDLSFG 680



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 5/316 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G +P V  ++ L+        + EA    + M     C+P+V T++ L+    +  R   
Sbjct: 142 GFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM-----CRPNVVTFTTLMNGLCREGRVVE 196

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +L  M   G++ + +TY TI+DG  K        +    M E     P++   +++I
Sbjct: 197 AVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAII 256

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 G        Y E    G+  D+ T N +   +  +G + + + ++  M +R   
Sbjct: 257 DGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKIN 316

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVTY+ +I  + K     + EE + +M  RG+ PN+ITY S++  + K   +   + +
Sbjct: 317 PNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHM 376

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              +       D   FN +I  Y  A  ++   EL   M E   V D  T+ T+I  +  
Sbjct: 377 FYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCL 436

Query: 324 LGMTEAAQNLENKMIA 339
           +G   AA +L  +MI+
Sbjct: 437 VGDLNAALDLSQQMIS 452



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 154/332 (46%), Gaps = 18/332 (5%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKF----HR 80
           +P+V  +T L++   + G + EA + ++ M  V D  +P+  TY  ++    K       
Sbjct: 175 RPNVVTFTTLMNGLCREGRVVEAVALLDRM--VEDGLQPNQITYGTIVDGMCKIGDTVSA 232

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            +L+ K + EMS+  I+ + V Y+ IIDG  K  +  +  + ++ M E G   PD+FT N
Sbjct: 233 LNLLRK-MEEMSH--IKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKG-IFPDLFTYN 288

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            MI  + +SG   + ++   E     +  ++ T + L  +Y +   + +   + D M  R
Sbjct: 289 CMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPR 348

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P  +TYN +I+ F K   ++  E  F  M  +G  P+  T+ +L+  Y  A  I   
Sbjct: 349 GIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDG 408

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +L ++  + ++ DT  +N +I  +   GD+    +L   M      PD +T  T++  
Sbjct: 409 TELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG 468

Query: 321 Y-------NALGMTEAAQNLENKMIAMKENSG 345
                   +AL M +A Q  +  + A +  +G
Sbjct: 469 LCDNGKLKDALEMFKAMQKSKMDLDASRPFNG 500



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 140/350 (40%), Gaps = 42/350 (12%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  E A  LF  M+     PSV  +  L+    +    D   S    M+       DVY+
Sbjct: 56  KGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMER-KQIPCDVYS 114

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           ++ILIK      +         +++ LG +   VT++T++ G     +  E    F  M 
Sbjct: 115 FNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM- 173

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD----------------- 170
               C P++ T  ++++     G + +     +     G++ +                 
Sbjct: 174 ----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDT 229

Query: 171 IQTLNILTK-------------------SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +  LN+L K                      + G +    ++   MQ++  FP + TYN 
Sbjct: 230 VSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNC 289

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ F  +G   + +   ++M  R + PN +TY +L++AY K     + + +  ++    
Sbjct: 290 MIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRG 349

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +I +T  +N +I  + +   ++    +F  M  + C PD  TF T+I  Y
Sbjct: 350 IIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGY 399



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 39/143 (27%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   ++A+ +F+ M S    P V  +  LVS Y ++G +D+               
Sbjct: 549 GLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGL------------- 595

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
                                  ++  EM   GI   A+TY T+I G+ K          
Sbjct: 596 -----------------------ELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDI 632

Query: 123 FSAMVESGGCHPDIFTLNSMISA 145
           F  M+ S G +PD  T+ SM++ 
Sbjct: 633 FQEMISS-GVYPDTITIRSMLTV 654


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 165/334 (49%), Gaps = 6/334 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  + ++M+  G  P    Y+ ++S + ++G L EA   +  M     C+PDV   S 
Sbjct: 387 ERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIR-RGCRPDVACLST 445

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           LI +  K    D  +++L  MS +G++C+   V Y+ +I    KAK+  E ES    MV+
Sbjct: 446 LIDALCKAAAIDSAQELL-RMS-IGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVK 503

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           +  C+PD+ T NS++     S  I      ++     GV  D+ T +I+  S+ +    D
Sbjct: 504 NR-CYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLD 562

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
               +++ M++    P VVTY+ +I    KAG ++K  + F++M   G  PN +TY +L+
Sbjct: 563 SAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLI 622

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               K   + +   +L  +       D+  + C+I+    A  +E+   +   MK++ C+
Sbjct: 623 DGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCL 682

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
           PD +T+ T+++A       E  + L  +M A +E
Sbjct: 683 PDRMTYGTLLRALQKTNNLELVEQLLKEMEATEE 716



 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 158/316 (50%), Gaps = 1/316 (0%)

Query: 3    MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            M  K  + E+A  L   M+  G  P+V  Y  +++   ++  + E    +  M S ++C 
Sbjct: 1097 MFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLS-NNCV 1155

Query: 63   PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            PD+ T++ +I +  K +R D+  ++   +   G   + VTYN+++ G  K+++F++ E  
Sbjct: 1156 PDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL 1215

Query: 123  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
               M    GC PDI T N++I     S  +++  K + +    G+  D  T +I+  S  
Sbjct: 1216 LREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLC 1275

Query: 183  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            +    D+  +V++ M K  F P  +TY  +I+ F K G+++K  E  + +  +G  P+ +
Sbjct: 1276 KWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVV 1335

Query: 243  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            T+   +   SK G + +   +L  +  + ++ DT  +N ++  +  A   E   +LF  M
Sbjct: 1336 TFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVM 1395

Query: 303  KERHCVPDNITFATMI 318
            ++  C PDN T+ T++
Sbjct: 1396 RQCGCEPDNATYTTLV 1411



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 152/305 (49%), Gaps = 1/305 (0%)

Query: 16   LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
            L + M   G+  +V ++  ++     +  LD A     +M+    C PDV+TYS ++ S 
Sbjct: 899  LLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSL 958

Query: 76   TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
             K  + D   +++ +M   G   + VTY++++ G  KA K +E  +    M  SG C P+
Sbjct: 959  VKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG-CSPN 1017

Query: 136  IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            I T N++I  +   G I++      E    G + ++ T  +L  ++ + G  +    +++
Sbjct: 1018 IVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVE 1077

Query: 196  FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
             M ++ + P + TYN +++ F K   +E+  +    M  +G  PN ++Y ++++   KA 
Sbjct: 1078 VMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKAT 1137

Query: 256  LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
             + +   +L Q+ +++ + D   FN II A  +   V+   ELF  ++E  C P+ +T+ 
Sbjct: 1138 KVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYN 1197

Query: 316  TMIQA 320
            +++  
Sbjct: 1198 SLVHG 1202



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 158/336 (47%), Gaps = 3/336 (0%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K  + + A  L E M+S G  P+V  Y++L+    ++G LDEA + +  M + S C P
Sbjct: 958  LVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRM-TRSGCSP 1016

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            ++ TY+ +I    K  R D    +L EM   G + + VTY  ++D + K  K E+     
Sbjct: 1017 NIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLV 1076

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              MVE G   P++FT NS++  +     +E+  +  +     G   ++ + N +     +
Sbjct: 1077 EVMVEKGYV-PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCK 1135

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            A    +   +++ M      P +VT+N +I+   K   ++   E F  ++  G  PN +T
Sbjct: 1136 ATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVT 1195

Query: 244  YCSLVSAYSKAGLIMKVDSILRQV-ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y SLV    K+    + + +LR++        D   +N +I    ++  V++  +LFL M
Sbjct: 1196 YNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQM 1255

Query: 303  KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                  PD++T++ +I +       + A N+   M+
Sbjct: 1256 LSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELML 1291



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 139/305 (45%), Gaps = 3/305 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M   GLK    V+ +++     +G   +A     +M     C PD  TY+ +I   
Sbjct: 183 LFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT--CPPDSVTYNTMINGL 240

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           +K  R D   ++L EM   G   +  +YNT++ G+ KA + E        MV + GC PD
Sbjct: 241 SKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMV-TRGCPPD 299

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + +  ++I+       +++  +  ++    G + ++ T   L   + R G  D    ++ 
Sbjct: 300 VVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVR 359

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M +R + P  +TYN ++  F +   +E+  +  + M   G  P++I Y +++S + KAG
Sbjct: 360 KMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAG 419

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   +L Q+       D    + +I A  +A  ++   EL        C PD + ++
Sbjct: 420 KLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYS 479

Query: 316 TMIQA 320
            +I A
Sbjct: 480 ILIHA 484



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 129/258 (50%)

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            C P+++T++ILI    +        ++L EM   G+  + + +N +I G   A+K +   
Sbjct: 873  CSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSAL 932

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              F  M ESG C PD+FT ++++ +   SG ++   +   +    G   ++ T + L   
Sbjct: 933  ELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHG 992

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
              +AG  D+  +++  M +    P +VTYN +I+   K G I++     ++M   G +PN
Sbjct: 993  LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPN 1052

Query: 241  SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             +TY  L+ A+ K G       ++  +     + +   +N ++  + +  +VE+  +L  
Sbjct: 1053 VVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLS 1112

Query: 301  TMKERHCVPDNITFATMI 318
            +M ++ CVP+ +++ T+I
Sbjct: 1113 SMIQKGCVPNVVSYNTVI 1130



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 160/337 (47%), Gaps = 5/337 (1%)

Query: 5    GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            G CK  + ++A  L E M+  G +P+V  YT L+ A+ + G  ++A   +  M       
Sbjct: 1027 GHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVE-KGYV 1085

Query: 63   PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            P+++TY+ L+    K    +   ++L+ M   G   + V+YNT+I G  KA K  E    
Sbjct: 1086 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLL 1145

Query: 123  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
               M+ S  C PDI T N++I A   +  ++   + +N     G   ++ T N L     
Sbjct: 1146 LEQML-SNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLC 1204

Query: 183  RAGMYDKMRSVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            ++  +D+   ++  M +K+   P ++TYN VI+   K+  +++  + F +M   G+ P+ 
Sbjct: 1205 KSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDD 1264

Query: 242  ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            +TY  ++S+  K   + + +++L  +  +        +  +I  + + G+++K  E+   
Sbjct: 1265 VTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQL 1324

Query: 302  MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +  +   PD +TF+  I   +  G    A  L   M+
Sbjct: 1325 LLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETML 1361



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/318 (20%), Positives = 140/318 (44%), Gaps = 2/318 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + + A  L E M+ +G  P+V  Y  ++  + ++  ++ A   +  M +   C P
Sbjct: 240 LSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVT-RGCPP 298

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV +Y+ +I    K  + D   +++ +M   G + + +TY T++DG+ +    +      
Sbjct: 299 DVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELV 358

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E G   P+  T N+++  +    ++E+  +        G   D    + +   + +
Sbjct: 359 RKMTERGY-RPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCK 417

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG   +   +++ M +R   P V   + +I+   KA  I+  +E  +        P+ + 
Sbjct: 418 AGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVA 477

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+ A  KA  + + +S L  +  +    D   +N ++    ++  +     LF  M+
Sbjct: 478 YSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMR 537

Query: 304 ERHCVPDNITFATMIQAY 321
               +PD +T++ +I ++
Sbjct: 538 AAGVMPDVVTYSIVIHSF 555



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 151/338 (44%), Gaps = 27/338 (7%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            ++A+ + E+ML +G  P    Y  L+  + ++G LD+A   +  + S     PDV T+SI
Sbjct: 1281 DEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGS-YPDVVTFSI 1339

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
             I   +K  R     ++L  M   G+    VTYNT++ G+  A   E+    F  M + G
Sbjct: 1340 FIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCG 1399

Query: 131  GCHPDIFTLNSMIS------------AYGNSGNIEKMEKWYNEFNL-----MGVKADIQT 173
             C PD  T  +++             A  +   ++   K  +E +      + V+AD++ 
Sbjct: 1400 -CEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRL 1458

Query: 174  LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
               +   +G+ G     R V + M +R     VV ++ ++  +      E+    ++ M 
Sbjct: 1459 GCAIVDMFGKCGSPQDARKVFEGMDQR----NVVLWSAMLGVYVFHKQEEQAFGLWRVMG 1514

Query: 234  HRGMKPNSITYCSLVSAYSKAGLI-MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
              G++P+++T+ SL++    AGL+   VD  +    +  +      F+C+I   G+ G V
Sbjct: 1515 LEGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLV 1574

Query: 293  EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
             +  +L L M    C P   T+  ++ AY   G  E A
Sbjct: 1575 NEAEDLMLGMP---CKPSAATWNCLLSAYKICGDFERA 1609



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 96/230 (41%), Gaps = 37/230 (16%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++   A LLF+ M + G+ P V  Y+ ++ ++ +   LD AF  +  MK  + C P
Sbjct: 520 LCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKE-AKCVP 578

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TYS LI    K    D    +  EM   G   + VTYNT+IDG  K  K E+     
Sbjct: 579 DVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEML 638

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M +   C PD  T   +I+   N+  +E  E W                         
Sbjct: 639 EIMRKQ-SCTPDSITYTCLINGLCNASRLE--EAW------------------------- 670

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
                    V+  M+ +   P  +TY  ++    K  ++E +E+  K+M+
Sbjct: 671 --------RVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEME 712



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 1/208 (0%)

Query: 132  CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
            C P++FT   +I     +G+I    +   E    GV  ++   N++ K    A   D   
Sbjct: 873  CSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSAL 932

Query: 192  SVMDFMQKRFFFPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M++    P  V TY+ ++++  K+G ++      + M  +G  PN +TY SL+  
Sbjct: 933  ELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHG 992

Query: 251  YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
              KAG + +  ++L+++  S    +   +N II  + + G +++   L   M +  C P+
Sbjct: 993  LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPN 1052

Query: 311  NITFATMIQAYNALGMTEAAQNLENKMI 338
             +T+  ++ A+   G  E A  L   M+
Sbjct: 1053 VVTYTVLLDAFCKCGKAEDAIGLVEVMV 1080



 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 3    MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            M GKC  P+ A  +FE M     + +V +++A++  Y      ++AF     M  +   +
Sbjct: 1465 MFGKCGSPQDARKVFEGM----DQRNVVLWSAMLGVYVFHKQEEQAFGLWRVM-GLEGVE 1519

Query: 63   PDVYTYSILIKSCTKFHRFD-LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PD  T+  L+  C      D  +++ ++     G+E     ++ +ID  G+     E E 
Sbjct: 1520 PDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAED 1579

Query: 122  SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
                M     C P   T N ++SAY   G+ E+
Sbjct: 1580 LMLGM----PCKPSAATWNCLLSAYKICGDFER 1608


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 175/371 (47%), Gaps = 44/371 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L KC++      +F+ M S+G+  +V VYTA+++AYG++G    +   +N MK      
Sbjct: 151 LLDKCRE------VFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQ-ERVS 203

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNT---------------- 105
           P + TY+ +I +C +    ++ +  + AEM + GI+   +TYNT                
Sbjct: 204 PSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEM 263

Query: 106 -------------------IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
                              ++  +GK  + E++      M ESGG  PDI + N ++ AY
Sbjct: 264 VFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREM-ESGGNLPDITSYNVLLEAY 322

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G+I++    + +    G  A+  T ++L   YG+ G YD +R +   M+     P  
Sbjct: 323 AELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDA 382

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TYNI+I+ FG+ G+ +++   F  M    ++PN  TY  L+ A  K GL      IL  
Sbjct: 383 GTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLH 442

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +    ++  +  +  +I A+GQA   E+   +F TM E    P   T+ + I A+   G+
Sbjct: 443 MNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGL 502

Query: 327 TEAAQNLENKM 337
            + A+ + ++M
Sbjct: 503 YKEAEAILSRM 513



 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 169/332 (50%), Gaps = 5/332 (1%)

Query: 3   MLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +LG C      ++A ++F  M   G+ P ++ Y+ LV  +G+   L++    + +M+S  
Sbjct: 248 LLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGG 307

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +  PD+ +Y++L+++  +         +  +M   G   +A TY+ +++ YGK  +++++
Sbjct: 308 NL-PDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDV 366

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M  S    PD  T N +I  +G  G  +++   +++     V+ +++T   L  
Sbjct: 367 RDIFLEMKVSN-TDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIF 425

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           + G+ G+Y+  + ++  M ++   P+   Y  VIE FG+A   E+    F  M   G  P
Sbjct: 426 ACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNP 485

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
              TY S + A+++ GL  + ++IL ++  S +  D   FN +I A+ Q G  E+  + +
Sbjct: 486 TVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSY 545

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           + M++ +C P+ +T   ++  Y + G+ + ++
Sbjct: 546 VEMEKANCEPNELTLEVVLSVYCSAGLVDESE 577



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 157/309 (50%), Gaps = 3/309 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+  +YT +++  G+ GLLD+     ++M S    +  VY Y+ +I +  +  +F    
Sbjct: 133 KPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVAR-TVYVYTAVINAYGRNGQFHASL 191

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           ++L  M    +  S +TYNT+I+   +    +E +   F+ M    G  PD+ T N+++ 
Sbjct: 192 ELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHE-GIQPDVITYNTLLG 250

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A  + G  ++ E  +   N  G+  DI T + L +++G+    +K+  ++  M+     P
Sbjct: 251 ACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLP 310

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            + +YN+++E + + G I++  + F++M+  G   N+ TY  L++ Y K G    V  I 
Sbjct: 311 DITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIF 370

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            +++ S+   D   +N +I  +G+ G  +++  LF  M E +  P+  T+  +I A    
Sbjct: 371 LEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKG 430

Query: 325 GMTEAAQNL 333
           G+ E A+ +
Sbjct: 431 GLYEDAKKI 439



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 149/314 (47%), Gaps = 2/314 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           K S++ +  +   + Q G    +      M+    CKP+ + Y+I+I    +    D   
Sbjct: 97  KLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCR 156

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           ++  EM   G+  +   Y  +I+ YG+  +F       + M +     P I T N++I+A
Sbjct: 157 EVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQER-VSPSILTYNTVINA 215

Query: 146 YGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               G + E +   + E    G++ D+ T N L  +    G+ D+   V   M +    P
Sbjct: 216 CARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVP 275

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            + TY+ +++TFGK   +EK+ E  ++M+  G  P+  +Y  L+ AY++ G I +   + 
Sbjct: 276 DINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVF 335

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           RQ++ +  + +   ++ +++ YG+ G  + + ++FL MK  +  PD  T+  +IQ +   
Sbjct: 336 RQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEG 395

Query: 325 GMTEAAQNLENKMI 338
           G  +    L + M+
Sbjct: 396 GYFKEVVTLFHDMV 409



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 127/251 (50%), Gaps = 2/251 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  + +    +F  M      P    Y  L+  +G+ G   E  +  +DM    + +
Sbjct: 356 LYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVE-ENVE 414

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++ TY  LI +C K   ++  +KIL  M+  GI  S+  Y  +I+ +G+A  +EE    
Sbjct: 415 PNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVV 474

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ M E G  +P + T NS I A+   G  ++ E   +  N  G+K D+ + N + K++ 
Sbjct: 475 FNTMNEVG-SNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFR 533

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G Y++       M+K    P  +T  +V+  +  AG +++ EE F+++K  G+ P+ +
Sbjct: 534 QGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVM 593

Query: 243 TYCSLVSAYSK 253
            YC +++ Y+K
Sbjct: 594 CYCLMLALYAK 604



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 131/305 (42%), Gaps = 37/305 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK  + E+ S L   M S G  P +  Y  L+ AY + G + EA      M++ + C  
Sbjct: 287 FGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQA-AGCVA 345

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TYS+L+    K  R+D +  I  EM     +  A TYN +I  +G+   F+E+ + F
Sbjct: 346 NAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLF 405

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MVE     P++ T   +I A G  G  E  +K     N  G+    +    + +++G+
Sbjct: 406 HDMVEEN-VEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQ 464

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK----- 238
           A +Y++   V + M +    PTV TYN  I  F + G  ++ E    +M   G+K     
Sbjct: 465 AALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHS 524

Query: 239 ------------------------------PNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
                                         PN +T   ++S Y  AGL+ + +   ++++
Sbjct: 525 FNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIK 584

Query: 269 NSDVI 273
            S ++
Sbjct: 585 ASGIL 589



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 91/193 (47%), Gaps = 2/193 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK    E A  +   M   G+ PS   YT ++ A+GQ+ L +EA    N M  V    P 
Sbjct: 428 GKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVG-SNPT 486

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+  I +  +   +   E IL+ M+  G++    ++N +I  + +  ++EE   S+ 
Sbjct: 487 VETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYV 546

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E   C P+  TL  ++S Y ++G +++ E+ + E    G+   +    ++   Y + 
Sbjct: 547 EM-EKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKN 605

Query: 185 GMYDKMRSVMDFM 197
              +   +++D M
Sbjct: 606 DRLNDAYNLIDEM 618


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 158/321 (49%), Gaps = 3/321 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK +Q  +A  ++  +L     P+ D Y  L+ AY  +G L  A   I++M+      P+
Sbjct: 186 GKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMRE-HGIPPN 244

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+  +    K    +   ++   M       +  T+  +I+ YGKAK+       F+
Sbjct: 245 ATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFN 304

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +S GC P+I T  ++++A+   G  EK E+ + E    G + D+   N L ++Y RA
Sbjct: 305 EM-KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRA 363

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G+      +   MQ     P   +YNI+++ +G+AG  E  E  F+++K RGM P   ++
Sbjct: 364 GLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSH 423

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L++A++++G   + + ++ Q+  S +  DT   N +++AY +AG ++ M  LF  M E
Sbjct: 424 MLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAM-E 482

Query: 305 RHCVPDNITFATMIQAYNALG 325
           R    D  T+   + AY   G
Sbjct: 483 RRGDADVGTYNVAVNAYGRAG 503



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 157/301 (52%), Gaps = 3/301 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK KQP  +  +F  M S G KP++  YTALV+A+ + GL ++A     +M+     +PD
Sbjct: 291 GKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPD 349

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VY Y+ L+++ ++        +I + M ++G E    +YN ++D YG+A   E+ E+ F 
Sbjct: 350 VYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFE 409

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + + G   P + +   +++A+  SGN  + E+   + +  G+  D   LN +  +Y RA
Sbjct: 410 ELKQRG-MSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARA 468

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D M  +   M++R     V TYN+ +  +G+AG++ +ME  F  +  RG+  + +T+
Sbjct: 469 GRLDDMERLFAAMERRGD-ADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTW 527

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            + + AY++     +   ++ ++ ++    D      +++A      VE++  +  +M +
Sbjct: 528 TARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRSMHK 587

Query: 305 R 305
           +
Sbjct: 588 K 588



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 146/315 (46%), Gaps = 2/315 (0%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
           ++     +P +  Y  L+ +YG+   L++A S    +   + C P   TY++L+++    
Sbjct: 165 ILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLE-AQCVPTEDTYALLLRAYCNA 223

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
                 E +++EM   GI  +A  YN  +DG  KA+  E+    +  M +   C  +  T
Sbjct: 224 GSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRM-KRERCRANTET 282

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
              MI+ YG +       K +NE   +G K +I T   L  ++ R G+ +K   V + MQ
Sbjct: 283 FTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 342

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +    P V  YN ++E + +AG  +   E F  M+H G +P+  +Y  LV AY +AGL  
Sbjct: 343 QAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHE 402

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             +++  +++   +         +++A+ ++G+  +  E+   + +    PD      M+
Sbjct: 403 DAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAML 462

Query: 319 QAYNALGMTEAAQNL 333
            AY   G  +  + L
Sbjct: 463 NAYARAGRLDDMERL 477



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 149/317 (47%), Gaps = 3/317 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  E+A  +++ M  +  + + + +T +++ YG++     +    N+MKS+  CKP
Sbjct: 255 LLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG-CKP 313

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A   +     F
Sbjct: 314 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 373

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M +  GC PD  + N ++ AYG +G  E  E  + E    G+   +++  +L  ++ R
Sbjct: 374 SLM-QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHAR 432

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G   +   VM  + K    P     N ++  + +AG ++ ME  F  M+ RG   +  T
Sbjct: 433 SGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRG-DADVGT 491

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y   V+AY +AG + ++++    V    +  D   +   + AY +  +  +   +   M 
Sbjct: 492 YNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMV 551

Query: 304 ERHCVPDNITFATMIQA 320
           +  C PD  T   ++ A
Sbjct: 552 DAGCYPDAGTARVLLAA 568



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 81/170 (47%)

Query: 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           + DI   N+L +SYG+    +K  S+   + +    PT  TY +++  +  AG + + E 
Sbjct: 172 RPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEG 231

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
              +M+  G+ PN+  Y + +    KA    K   + ++++      +T  F  +I+ YG
Sbjct: 232 VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYG 291

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +A       ++F  MK   C P+  T+  ++ A+   G+ E A+ +  +M
Sbjct: 292 KAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEM 341



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%)

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
           F P ++ YN++IE++GK   + K E  +  +      P   TY  L+ AY  AG + + +
Sbjct: 171 FRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAE 230

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            ++ ++    +  +   +N  +    +A   EK  E++  MK   C  +  TF  MI  Y
Sbjct: 231 GVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVY 290

Query: 322 NALGMTEAAQNLENKM 337
                  ++  + N+M
Sbjct: 291 GKAKQPMSSMKVFNEM 306


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 171/370 (46%), Gaps = 34/370 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA--------------- 48
           L K    + A  +FE M SDG+ P+  +   LVS++ + G L  A               
Sbjct: 113 LCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQSYEVEGCCM 172

Query: 49  -----FSTINDMKSVSD-------------CKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
                 +T+  +  V D             C  D  T++ILI+      + +   ++L  
Sbjct: 173 VVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCN-DTKTFNILIRGLCGVGKAEKAVELLGG 231

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           MS  G     VTYNT+I G+ K+ + ++    F  +  S GC PD+ T  SMIS Y  +G
Sbjct: 232 MSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAG 291

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            +++     ++   +G+     T N+L   Y +AG       +   M     FP VVT+ 
Sbjct: 292 KMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFT 351

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I+ + + G + +    +++M  RGM PN+ TY  L++A  K   ++K   +L Q+ + 
Sbjct: 352 SLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASK 411

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           D+I     +N +I  + +AG V +   +   M+++ C PD ITF  +I  +   G    A
Sbjct: 412 DIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEA 471

Query: 331 QNLENKMIAM 340
            ++ +KM+A+
Sbjct: 472 VSIFHKMVAI 481



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 33/147 (22%)

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI---------- 257
           TYN++  +  KAG  +   + F+ MK  G+ PNS     LVS++++ G +          
Sbjct: 105 TYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQS 164

Query: 258 -------MKVDSILRQVENSDVIL----------------DTPFFNCIISAYGQAGDVEK 294
                  M V+S+L  +   D +                 DT  FN +I      G  EK
Sbjct: 165 YEVEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEK 224

Query: 295 MGELFLTMKERHCVPDNITFATMIQAY 321
             EL   M    C+PD +T+ T+I+ +
Sbjct: 225 AVELLGGMSGFGCLPDIVTYNTLIKGF 251


>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
 gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 164/326 (50%), Gaps = 6/326 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A  L + M  +G+ P +  +  ++SAY       +A S    MK  ++ +PD  T +I
Sbjct: 222 REALKLCKKMTENGVGPDLVTHNIILSAYKTGAQYAKALSYFELMKG-TNIRPDTTTLNI 280

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I   TK  +++    I   M     EC    VT+ +II  Y    + E   + FS MV 
Sbjct: 281 IIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMV- 339

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           + G  P+I + N+++ AY + G  ++    +N     G++ D+ +   L  SYGR+    
Sbjct: 340 AEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPK 399

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K R V + M++    P +V+YN +I+ +G  G + +  E  ++M+  G+ PN+++ C+L+
Sbjct: 400 KAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLL 459

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           +A  +    + +D +L+  E   + L+T  +N  I +Y   G+ EK   ++ +M++   +
Sbjct: 460 AACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVI 519

Query: 309 PDNITFATMIQAYNALGMTEAAQNLE 334
           PD +TF  +I       MT+  + LE
Sbjct: 520 PDAVTFTVLISG--CCKMTKYCEALE 543



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 146/311 (46%), Gaps = 4/311 (1%)

Query: 29  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88
            D+Y  ++  + +    D+A     +M+    CKPD  T + LI +  +  ++     I+
Sbjct: 135 TDIYNMMIRLHARHNWTDQARGLFFEMQKWR-CKPDAETCNALINAHGRSGQWRWAMNIM 193

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            +M    I  S  TYN +I+  G +  + E       M E+G   PD+ T N ++SAY  
Sbjct: 194 EDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENG-VGPDLVTHNIILSAYKT 252

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTV 206
                K   ++       ++ D  TLNI+     + G Y+K   +   M+++     P V
Sbjct: 253 GAQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDV 312

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VT+  +I  +   G IE     F  M   G+KPN ++Y +L+ AY+  G+  +  S+   
Sbjct: 313 VTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNA 372

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           ++NS +  D   +  ++++YG++   +K  E+F  MK     P+ +++  MI AY + G+
Sbjct: 373 IKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGL 432

Query: 327 TEAAQNLENKM 337
              A  +  +M
Sbjct: 433 LAEAVEVLREM 443



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 151/343 (44%), Gaps = 29/343 (8%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E    +F  M+++GLKP++  Y  L+ AY   G+  EA S  N +K+ S  +PDV +Y
Sbjct: 327 QIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKN-SGLRPDVVSY 385

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + L+ S  +  +     ++   M    ++ + V+YN +ID YG      E       M E
Sbjct: 386 TSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREM-E 444

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             G +P+  ++ ++++A G       ++          +K +    N    SY   G ++
Sbjct: 445 QDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFE 504

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGK---------------------------AGH 221
           K  S+   M+K    P  VT+ ++I    K                           +G 
Sbjct: 505 KATSMYRSMRKSKVIPDAVTFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYSSGK 564

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           I + E  F KMK  G  P+ +TY  ++ AY+ A    K  ++L+++E  ++  DT   + 
Sbjct: 565 ITEAESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSA 624

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           ++ A+ + GD  K+  L   M+E+     +  F  M+ A + L
Sbjct: 625 LMRAFNKGGDPSKVLILAEFMREKEIPLSDAIFFEMVSACSLL 667



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 141/299 (47%), Gaps = 10/299 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+ +QP++A  +FE+M  D LKP++  Y A++ AYG +GLL EA   + +M+      P+
Sbjct: 393 GRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQ-DGIYPN 451

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +   L+ +C +  R   I+ +L       I+ + + YN+ I  Y    +FE+  S + 
Sbjct: 452 AVSICTLLAACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYR 511

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           +M +S    PD  T   +IS         KM K+      +    D++    +TK    +
Sbjct: 512 SMRKSK-VIPDAVTFTVLISGCC------KMTKYCEALEFLSEMMDLKIP--MTKEAYSS 562

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +  S+ + M+     P VVTY +++  +  A H +K     ++M+   ++P++I  
Sbjct: 563 GKITEAESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIAC 622

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
            +L+ A++K G   KV  +   +   ++ L    F  ++SA     D     EL   M+
Sbjct: 623 SALMRAFNKGGDPSKVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIKLME 681



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+  N MI  +      ++    + E      K D +T N L  ++GR+G +    ++M
Sbjct: 136 DIY--NMMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAHGRSGQWRWAMNIM 193

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + M ++   P+  TYN +I   G +G+  +  +  KKM   G+ P+ +T+  ++SAY   
Sbjct: 194 EDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPDLVTHNIILSAYKTG 253

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 312
               K  S    ++ +++  DT   N II    + G  EK   +F +M+E+   C PD +
Sbjct: 254 AQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVV 313

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           TF ++I  Y+  G  E  + + + M+A
Sbjct: 314 TFTSIIHLYSVNGQIENCRAVFSTMVA 340



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 127/321 (39%), Gaps = 45/321 (14%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C +     ++ +      +K +   Y + + +Y   G  ++A S    M+  S   PD
Sbjct: 463 GRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRK-SKVIPD 521

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             T+++LI  C K  ++    + L+EM  L I  +   Y++         K  E ES F+
Sbjct: 522 AVTFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYSS--------GKITEAESMFN 573

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +  GC PD+ T   M+ AY  + + +K      E     ++ D    + L +++ + 
Sbjct: 574 KM-KMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSALMRAFNKG 632

Query: 185 GMYDKMRSVMDFMQKR-------FFFPTVVT------YNIVIETF--------------- 216
           G   K+  + +FM+++        FF  V        +   IE                 
Sbjct: 633 GDPSKVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIKLMESSFSVVSIGLL 692

Query: 217 -------GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
                  GK+G IE M + F K+   G + N  TY  L+      G   K   +L  +E 
Sbjct: 693 NQLLHLLGKSGKIESMMKLFYKIIGSGAEINCNTYSILLKNLLAVGNWRKYIEVLEWMEE 752

Query: 270 SDVILDTPFFNCIISAYGQAG 290
           + V      +  IIS   ++G
Sbjct: 753 ARVQPSNGMYFDIISFAQKSG 773


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 158/316 (50%), Gaps = 1/316 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M  K  + E+A  L   M+  G  P+V  Y  +++   ++  + E    +  M S ++C 
Sbjct: 369 MFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLS-NNCV 427

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+ T++ +I +  K +R D+  ++   +   G   + VTYN+++ G  K+++F++ E  
Sbjct: 428 PDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL 487

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M    GC PDI T N++I     S  +++  K + +    G+  D  T +I+  S  
Sbjct: 488 LREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLC 547

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    D+  +V++ M K  F P  +TY  +I+ F K G+++K  E  + +  +G  P+ +
Sbjct: 548 KWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVV 607

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+   +   SK G + +   +L  +  + ++ DT  +N ++  +  A   E   +LF  M
Sbjct: 608 TFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVM 667

Query: 303 KERHCVPDNITFATMI 318
           ++  C PDN T+ T++
Sbjct: 668 RQCGCEPDNATYTTLV 683



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 156/319 (48%), Gaps = 3/319 (0%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK  + E A  L E M+  G  P V  YT +++   +   +DEA   ++ M    
Sbjct: 85  VLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQ-R 143

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C+P+V TY  L+    +    D   +++ +M+  G   +A+TYN I+ G    +K +  
Sbjct: 144 GCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSA 203

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M ESG C PD+FT ++++ +   SG ++   +        G   ++ T + L  
Sbjct: 204 LQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLH 263

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              +AG  D+  +++  M +    P +VTYN +I+   K G I++     ++M   G +P
Sbjct: 264 GLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQP 323

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N +TY  L+ A+ K G       ++  +     + +   +N ++  + +  +VE+  +L 
Sbjct: 324 NVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLL 383

Query: 300 LTMKERHCVPDNITFATMI 318
            +M ++ CVP+ +++ T+I
Sbjct: 384 SSMIQKGCVPNVVSYNTVI 402



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 148/305 (48%), Gaps = 1/305 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L   M   G +P+   Y  ++        LD A     +M+    C PDV+TYS ++ S 
Sbjct: 171 LVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSL 230

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  + D   +++  M   G   + VTY++++ G  KA K +E  +    M  SG C P+
Sbjct: 231 VKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG-CSPN 289

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I T N++I  +   G I++      E    G + ++ T  +L  ++ + G  +    +++
Sbjct: 290 IVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVE 349

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M ++ + P + TYN +++ F K   +E+  +    M  +G  PN ++Y ++++   KA 
Sbjct: 350 VMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKAT 409

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   +L Q+ +++ + D   FN II A  +   V+   ELF  ++E  C P+ +T+ 
Sbjct: 410 KVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYN 469

Query: 316 TMIQA 320
           +++  
Sbjct: 470 SLVHG 474



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 158/336 (47%), Gaps = 3/336 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + + A  L E M+S G  P+V  Y++L+    ++G LDEA + +  M + S C P
Sbjct: 230 LVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRM-TRSGCSP 288

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY+ +I    K  R D    +L EM   G + + VTY  ++D + K  K E+     
Sbjct: 289 NIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLV 348

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MVE G   P++FT NS++  +     +E+  +  +     G   ++ + N +     +
Sbjct: 349 EVMVEKGYV-PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCK 407

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A    +   +++ M      P +VT+N +I+   K   ++   E F  ++  G  PN +T
Sbjct: 408 ATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVT 467

Query: 244 YCSLVSAYSKAGLIMKVDSILRQV-ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           Y SLV    K+    + + +LR++        D   +N +I    ++  V++  +LFL M
Sbjct: 468 YNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQM 527

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                 PD++T++ +I +       + A N+   M+
Sbjct: 528 LSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELML 563



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 160/337 (47%), Gaps = 5/337 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + ++A  L E M+  G +P+V  YT L+ A+ + G  ++A   +  M       
Sbjct: 299 GHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVE-KGYV 357

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+++TY+ L+    K    +   ++L+ M   G   + V+YNT+I G  KA K  E    
Sbjct: 358 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLL 417

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+ S  C PDI T N++I A   +  ++   + +N     G   ++ T N L     
Sbjct: 418 LEQML-SNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLC 476

Query: 183 RAGMYDKMRSVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           ++  +D+   ++  M +K+   P ++TYN VI+   K+  +++  + F +M   G+ P+ 
Sbjct: 477 KSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDD 536

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  ++S+  K   + + +++L  +  +        +  +I  + + G+++K  E+   
Sbjct: 537 VTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQL 596

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  +   PD +TF+  I   +  G    A  L   M+
Sbjct: 597 LLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETML 633



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 147/351 (41%), Gaps = 39/351 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GLK    V+ +++     +G   +A     +M     C PD  TY+ +I   +K  R D 
Sbjct: 5   GLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT--CPPDSVTYNTMINGLSKSDRLDD 62

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             ++L EM   G   +  +YNT++ G+ KA + E        MV  G C PD+ +  ++I
Sbjct: 63  AIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRG-CPPDVVSYTTVI 121

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           +       +++  +  ++    G + ++ T   L   + R G  D    ++  M +R + 
Sbjct: 122 NGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYR 181

Query: 204 PTVVTYN------------------------------------IVIETFGKAGHIEKMEE 227
           P  +TYN                                     ++++  K+G ++    
Sbjct: 182 PNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACR 241

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
             + M  +G  PN +TY SL+    KAG + +  ++L+++  S    +   +N II  + 
Sbjct: 242 LVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHC 301

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + G +++   L   M +  C P+ +T+  ++ A+   G  E A  L   M+
Sbjct: 302 KLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV 352



 Score = 38.1 bits (87), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 8/136 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  + +++LS G  P V  ++  +    + G L +A   +  M   +   PD  TY+ 
Sbjct: 588 DKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLR-AGLVPDTVTYNT 646

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS-AMVES 129
           L+K      R +    +   M   G E    TY T++      K ++++ +  S +MV++
Sbjct: 647 LLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDT 706

Query: 130 GGCHPDIFTLNSMISA 145
           G      F LN  +S+
Sbjct: 707 G------FKLNHELSS 716


>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
          Length = 500

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 156/349 (44%), Gaps = 35/349 (10%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
           ++L    K  V  Y  L+ A+GQ  L  EA ST   +   + C P+  TY++LIK+    
Sbjct: 152 ILLRSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQLLE-ARCIPNEDTYALLIKAYCLS 210

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-------- 130
              +  E +  EM   G+  SAV YN+ I+G  K     + E  F  M   G        
Sbjct: 211 GLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETY 270

Query: 131 --------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
                                      C P+I T  ++++A+   G  EK E+ + +   
Sbjct: 271 TMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQE 330

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G++ D+ + N L ++Y RAG       +   MQ     P   +YNI+++ +G+AG +  
Sbjct: 331 AGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLND 390

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
            E  F+ MK  G+ P   ++  L+SA+SK G + K + IL Q+  S + LDT   N +++
Sbjct: 391 AEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLN 450

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            YG+ G   KM E+   M+   C  D  T+  +I  Y   G  +  + L
Sbjct: 451 LYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKMEGL 499



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 146/296 (49%), Gaps = 37/296 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K   P +A  +F  M  DG KPS + YT L++ YG+ G    A    N+M S   CKP
Sbjct: 242 LMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLS-HKCKP 300

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY+ L+ +   F R  L EK  AE                       + FE+M+ + 
Sbjct: 301 NICTYTALVNA---FAREGLCEK--AE-----------------------EVFEQMQEA- 331

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
                  G  PD+++ N+++ AY  +G      + ++    MG + D  + NIL  +YGR
Sbjct: 332 -------GLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGR 384

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  +   +V + M++    PT+ ++ +++  F K G++ K E+   +M   G+K ++  
Sbjct: 385 AGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFV 444

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
             S+++ Y + G   K++ +L  +EN     D   +N +I+ YGQAG ++KM  LF
Sbjct: 445 LNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKMEGLF 500



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 2/227 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  +   A  +F  MLS   KP++  YTALV+A+ + GL ++A      M+  +  +
Sbjct: 276 LYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQE-AGLE 334

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDVY+Y+ L+++ ++        +I + M ++G E    +YN ++D YG+A    + E+ 
Sbjct: 335 PDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAV 394

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  G  P + +   ++SA+  +GN+ K E   N+    G+K D   LN +   YG
Sbjct: 395 FEDM-KRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYG 453

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           R G + KM  V+  M+       + TYNI+I  +G+AG I+KME  F
Sbjct: 454 RLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKMEGLF 500



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 151/328 (46%), Gaps = 6/328 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA-FSTINDMKSVSDCKPD 64
           KC         F     DG+ P +      +  Y Q G+  E+ + +++ +++  +   D
Sbjct: 69  KCGSLRGRGWKFGSGFVDGIFPVLSPTAKKIMDYLQKGVDTESIWGSLDMLQASLEIWDD 128

Query: 65  VYTYSILIKSCTKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           + T S+ ++   ++     +   IL   S+   +   + YN +ID +G+   ++E ES++
Sbjct: 129 ILTVSVQLRMRKQWDSIISICRWILLRSSF---KQDVICYNLLIDAFGQKFLYKEAESTY 185

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             ++E+  C P+  T   +I AY  SG +EK E  + E    G+ +     N       +
Sbjct: 186 LQLLEAR-CIPNEDTYALLIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMK 244

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  +K   +   M++    P+  TY ++I  +GK G      + F +M     KPN  T
Sbjct: 245 GGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICT 304

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +LV+A+++ GL  K + +  Q++ + +  D   +N ++ AY +AG      E+F  M+
Sbjct: 305 YTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQ 364

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQ 331
              C PD  ++  ++ AY   G    A+
Sbjct: 365 HMGCEPDRASYNILVDAYGRAGFLNDAE 392


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 155/323 (47%), Gaps = 1/323 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA+ + E M + G +P +  Y  L +   Q+G +DEAF   ++M+ +S   PDV TY+ 
Sbjct: 297 KQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNT 356

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +C K+ R      +L EM   G++ S VT+N ++ G  +  + EE       M E G
Sbjct: 357 LVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEG 416

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T N++I AY  + N+ K     +E    G+K D  TLN L  +  +   Y++ 
Sbjct: 417 -LAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEA 475

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++    +R F P  V+Y  V+  + K    E     + +M  R + P+  TY +L+  
Sbjct: 476 EELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKG 535

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G + +    L ++    ++ D   +N II AY + GD+EK  +    M E +  PD
Sbjct: 536 LCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPD 595

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
            +T  T++      G  E A  L
Sbjct: 596 VVTCNTLMNGLCLHGKLEKAIKL 618



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 163/332 (49%), Gaps = 4/332 (1%)

Query: 12  QASL-LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           QASL +F  +++  L P+   +  LV  +   G L +A ST++ M+      PDV TY+ 
Sbjct: 192 QASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFG-LSPDVVTYNT 250

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+K+  +         +LA M   GI  +  TYNT++  Y +    ++  +   AM  + 
Sbjct: 251 LLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMT-AF 309

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTKSYGRAGMYDK 189
           G  PD++T N + +    +G +++  K  +E  +L  V  D+ T N L  +  +      
Sbjct: 310 GFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSD 369

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             ++++ M+ +    ++VT+NIV++   + G +E+     K M   G+ P+ ITY +L+ 
Sbjct: 370 ALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLID 429

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           AY KA  + K   ++ ++  S + +DT   N ++    +    E+  EL  +  +R  VP
Sbjct: 430 AYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVP 489

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           D +++ T++ AY      E A  L ++M   K
Sbjct: 490 DEVSYGTVMAAYFKENKPEPALYLWDEMSKRK 521



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 4/242 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K+ E+A  L       G  P    Y  +++AY +    + A    ++M S     P
Sbjct: 466 LCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEM-SKRKLTP 524

Query: 64  DVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            +YTY+ LIK  CT     + I+K L E+   G+     TYN II  Y K    E+    
Sbjct: 525 SIYTYNTLIKGLCTIGKLTEAIDK-LNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQF 583

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M+E+    PD+ T N++++     G +EK  K +  +   G K D+ T N L ++  
Sbjct: 584 HNKMLENY-FKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALC 642

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D        M+ R   P   TYN+V+    +AG  E+ +    K+   G      
Sbjct: 643 KDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERF 702

Query: 243 TY 244
           +Y
Sbjct: 703 SY 704


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 162/316 (51%), Gaps = 5/316 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFD 82
           G  PSV  Y A++ A   + L   A    + M S     P+VYTY+IL+++ C + HR +
Sbjct: 118 GYAPSVLAYNAVLLALSDASL-PSARRFFDSMLS-DGVAPNVYTYNILVRALCGRGHRKE 175

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
            +  +L +M   G + +AVTYNT++  + +A + +  E     M E GG  P++ T NS+
Sbjct: 176 ALS-VLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMRE-GGLKPNLVTFNSV 233

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           ++    +G +E   K ++E    G+  D  + N L   Y + G   +  SV   M ++  
Sbjct: 234 VNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGI 293

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P VVT+  +I    KAG++E+     ++M+ RG++ N IT+ +L+  + K G +     
Sbjct: 294 MPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALL 353

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
            +R++    +      +N +I+ Y   G +++  EL   M+ +   PD +T++T++ AY 
Sbjct: 354 AVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYC 413

Query: 323 ALGMTEAAQNLENKMI 338
             G T +A  L  +M+
Sbjct: 414 KNGDTHSAFQLNQQML 429



 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 164/360 (45%), Gaps = 35/360 (9%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A   F+ MLSDG+ P+V  Y  LV A    G   EA S + DM+  + C P+  TY+ L+
Sbjct: 141 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRG-AGCDPNAVTYNTLV 199

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-- 130
            +  +    D  E+++  M   G++ + VT+N++++G  KA + E+    F  MV+ G  
Sbjct: 200 AAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLA 259

Query: 131 ----------------GCH----------------PDIFTLNSMISAYGNSGNIEKMEKW 158
                           GC                 PD+ T  S+I     +GN+E+    
Sbjct: 260 PDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGL 319

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             E    G++ +  T   L   + + G  D     +  M++    P+VV YN +I  +  
Sbjct: 320 VREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCM 379

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
            G +++  E  ++M+ +G+KP+ +TY +++SAY K G       + +Q+  + V+ D   
Sbjct: 380 VGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAIT 439

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++ +I    +   +     LF  M      PD +T+ ++I  +   G  E A +L ++M+
Sbjct: 440 YSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMV 499



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 149/322 (46%), Gaps = 8/322 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK  + E A  +F+ M+ +GL P    Y  LV  Y + G   EA S   +M +  
Sbjct: 233 VVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEM-TRK 291

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PDV T++ LI    K    +    ++ EM   G++ + +T+  +IDG+ K K F  +
Sbjct: 292 GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCK-KGF--L 348

Query: 120 ESSFSAMVESGGC--HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           + +  A+ E   C   P +   N++I+ Y   G +++  +   E    GVK D+ T + +
Sbjct: 349 DDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTI 408

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             +Y + G       +   M +    P  +TY+ +I    +   +      FK M   G+
Sbjct: 409 LSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGL 468

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +P+ +TY SL+  + K G + +  S+  ++  + V+ D   ++ +I+   ++   ++   
Sbjct: 469 QPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQR 528

Query: 298 LFLTMKERHCVPDNITFATMIQ 319
           L   +     VP NI +  +++
Sbjct: 529 LLFKLYHEEPVPANIKYDALMR 550



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 147/343 (42%), Gaps = 17/343 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  L   M   GL+ +   +TAL+  + + G LD+A   + +M+     +P V  Y+ 
Sbjct: 314 ERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCR-IQPSVVCYNA 372

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       R D   +++ EM   G++   VTY+TI+  Y K             M+E+G
Sbjct: 373 LINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENG 432

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T +S+I        +      +     +G++ D  T   L   + + G  ++ 
Sbjct: 433 -VLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERA 491

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY-----C 245
            S+ D M K    P VVTY+++I    K+   ++ +    K+ H    P +I Y     C
Sbjct: 492 LSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRC 551

Query: 246 ----------SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
                     +L+  +   GL+ + D + + + + +  LD   ++ +I  + + G+V K 
Sbjct: 552 CRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKA 611

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                 M +    P++ +  ++I+     GM   A  +  +++
Sbjct: 612 LSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLL 654



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 141/314 (44%), Gaps = 17/314 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   M + G+KP V  Y+ ++SAY ++G    AF  +N     +   PD  TYS 
Sbjct: 384 DEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQ-LNQQMLENGVLPDAITYSS 442

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI+   +  R      +   M  LG++   VTY ++IDG+ K    E   S    MV++G
Sbjct: 443 LIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAG 502

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKW---------------YNEFNLMGVKADIQTLN 175
              PD+ T + +I+    S   ++ ++                Y+        A+++++ 
Sbjct: 503 -VLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVL 561

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L K +   G+ ++   V   +  R +      Y+++I    + G++ K   + K+M   
Sbjct: 562 ALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQC 621

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G  PNS +  SL+    + G++++ D +++Q+ N   + D      +I    + G+V+ +
Sbjct: 622 GFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAV 681

Query: 296 GELFLTMKERHCVP 309
            ++   M     +P
Sbjct: 682 LDVLHGMARDGLLP 695


>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 658

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 161/310 (51%), Gaps = 2/310 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           EQ   L +     GLK S   Y  L+ AY ++G LD+A +  ++MK V +   + + YS 
Sbjct: 271 EQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMK-VENVPANAFIYSR 329

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +     ++D   ++L +M    I+ +   +N +ID YGK  +  +   +F+ M +  
Sbjct: 330 LMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQM-DKE 388

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD+ T NS+I A+  +G I +      +         + T NI+  + G    + +M
Sbjct: 389 GFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEM 448

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++D M+ +   P VVTY  +++++G +    +  EY K+MK +G++P++  YC+L ++
Sbjct: 449 ALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANS 508

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y+K GL  +   + + +E   V L+    N +I+A+G AG   +   +F  + E    PD
Sbjct: 509 YAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYILEVGMSPD 568

Query: 311 NITFATMIQA 320
            +T+ T+++A
Sbjct: 569 VVTYTTLMKA 578



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 148/299 (49%), Gaps = 2/299 (0%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82
           +GL+    +Y  +++AY ++G  D+AF  +  M++  D  PDV +YS LI++     R D
Sbjct: 178 EGLEMDTKLYNDVINAYCRAGDPDKAFQYMGLMQAC-DLVPDVRSYSSLIETLVVVRRLD 236

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
             E   AEM     + +  T N ++  Y +    E++E       E  G     F+   +
Sbjct: 237 DAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQD-AEDAGLKLSTFSYGLL 295

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           I AY  +G +++ +  ++   +  V A+    + L  +Y  A  +D    ++  M     
Sbjct: 296 IDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNI 355

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P    +NI+I+T+GK G + +    F +M   G KP+ +T+ SL+ A+ +AGLI +   
Sbjct: 356 KPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALD 415

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +L+Q++  + +     +N I++A G     ++M  L   M+ +   P+ +T+ T++ +Y
Sbjct: 416 LLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSY 474



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 132/246 (53%), Gaps = 2/246 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  +  QA   F  M  +G KP V  + +L+ A+ ++GL+ EA   +  M+   +C P 
Sbjct: 370 GKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQE-RECVPS 428

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           ++TY+I++ +    +R+  +  +L EM + G++ + VTY T++D YG +K++ E  S + 
Sbjct: 429 LHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYRE-ASEYL 487

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             ++S G  P      ++ ++Y   G  E+  + +      GV+ ++  LN+L  ++G A
Sbjct: 488 KQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVA 547

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G Y +  SV D++ +    P VVTY  +++   KA  ++++ + +++M   G  P+ +  
Sbjct: 548 GKYVEAFSVFDYILEVGMSPDVVTYTTLMKALIKAEQLDQVPDVYEQMVRAGCTPDDMAK 607

Query: 245 CSLVSA 250
             L SA
Sbjct: 608 DMLRSA 613



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 118/267 (44%), Gaps = 2/267 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV     +Q +    L + M +  +KP+  ++  L+  YG+ G L +A  T   M     
Sbjct: 331 MVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDK-EG 389

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KPDV T++ LI++  +         +L +M       S  TYN I++  G   +++EM 
Sbjct: 390 FKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMA 449

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M    G  P++ T  +++ +YG S    +  ++  +    G++        L  S
Sbjct: 450 LLLDEM-RFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANS 508

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y + G+ ++   V   M+K      +   N++I  FG AG   +    F  +   GM P+
Sbjct: 509 YAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYILEVGMSPD 568

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQV 267
            +TY +L+ A  KA  + +V  +  Q+
Sbjct: 569 VVTYTTLMKALIKAEQLDQVPDVYEQM 595


>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
 gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 164/359 (45%), Gaps = 39/359 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + KQ E A  LFE M    L P    Y+ L++ +G+ G+ D A S +  M+       D+
Sbjct: 167 RAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALSWLQKMEQ-DRVSGDL 225

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME----- 120
             YS LI+   K   +     I + +   GI    V YN++I+ +GKAK F E       
Sbjct: 226 VLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGKAKLFREARLLLPE 285

Query: 121 --------------SSFSAMVESGG---------------CHPDIFTLNSMISAYGNSGN 151
                         +  S  VE+G                C  D+ T N MI  YG    
Sbjct: 286 MRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDM 345

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            ++ ++ +     MG++  I + N L + YG A ++ +   +   MQ++     VVTYN 
Sbjct: 346 AKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT 405

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ +GK+   EK     ++M++RG++PN+ITY +++S + KAG + +   + +++ +S 
Sbjct: 406 MIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSG 465

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           + +D   +  +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 466 IEIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRETAITILAGAGRIEEA 520



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 153/360 (42%), Gaps = 45/360 (12%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A LL   M + G+ P    Y+ L+S Y ++G   EA S  ++M  V  C 
Sbjct: 269 VFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVR-CP 327

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +++I    +       +++   M  +GIE   V+YNT++  YG+A+ F E    
Sbjct: 328 LDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHL 387

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +      ++ T N+MI  YG S   EK      E    G++ +  T + +   + 
Sbjct: 388 FRLM-QRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWD 446

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           +AG  D  R+ M F + R     +  V Y  +I  + +AG +     + K++ H   +P+
Sbjct: 447 KAGKLD--RAAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVA----HAKRLLHELKRPD 500

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII----------------- 283
           +I   + ++  + AG I +   + RQ  ++  + D   F C+I                 
Sbjct: 501 NIPRETAITILAGAGRIEEATWVFRQAFDAGEVKDITVFGCMIDLFSRNRKHTNVIEVFD 560

Query: 284 ------------------SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
                             +A G+  + EK   ++  M+E  CV  +     M+  Y A G
Sbjct: 561 KMRGAGYFPDSNVIALVLNACGKLREFEKADAIYKEMEEEGCVFSDEVHFQMLSLYGARG 620



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 141/320 (44%), Gaps = 37/320 (11%)

Query: 52  INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 111
           IN+  S S   P V+ Y+++I++  +  +++L   +  EM    +     TY+T+I  +G
Sbjct: 145 INEEASYS---PSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYSTLITHFG 201

Query: 112 KAKKF-------EEMESS--------FSAMVE-------------------SGGCHPDIF 137
           K   F       ++ME          +S ++E                     G  PD+ 
Sbjct: 202 KEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGISPDLV 261

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
             NSMI+ +G +    +      E    GV  D  + + L   Y   G Y +  SV   M
Sbjct: 262 AYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEALSVFSEM 321

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
            +      + T N++I+ +G+    ++ +  F  M+  G++P  ++Y +L+  Y +A L 
Sbjct: 322 NEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELF 381

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            +   + R ++  D+  +   +N +I  YG++ + EK   L   M+ R   P+ IT++T+
Sbjct: 382 GEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYSTI 441

Query: 318 IQAYNALGMTEAAQNLENKM 337
           I  ++  G  + A  L  K+
Sbjct: 442 ISIWDKAGKLDRAAMLFQKL 461



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 137/331 (41%), Gaps = 31/331 (9%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P +  Y  L+  YG++ L  EA      M+   D + +
Sbjct: 341 GQLDMAKEADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQR-KDIEQN 399

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ +IK   K    +    ++ EM   GIE +A+TY+TII  + KA K       F+
Sbjct: 400 VVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQ 459

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        +  M+   E  G              PD     + I+    +G IE+
Sbjct: 460 KLRSSGIEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAITILAGAGRIEE 519

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +   + R   +  +  V D M+   +FP      +V+ 
Sbjct: 520 ATWVFRQAFDAGEVKDITVFGCMIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLN 579

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
             GK    EK +  +K+M+  G   +   +  ++S Y   G    VDS+  ++++   I 
Sbjct: 580 ACGKLREFEKADAIYKEMEEEGCVFSDEVHFQMLSLYGARGDFQMVDSLFERLDSDPNIN 639

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
                  + S Y +A  +    ++   M+ER
Sbjct: 640 KKELHLVVASIYERANRLNDASQIMNRMRER 670



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 76/159 (47%), Gaps = 1/159 (0%)

Query: 182 GRAGMYDKMRSVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            R   + +  +++D++ ++  + P+V  YN+VI    +A   E     F++M+ R + P+
Sbjct: 130 SREPDWQRSLALLDWINEEASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPD 189

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY +L++ + K G+     S L+++E   V  D   ++ +I    +  D  K   +F 
Sbjct: 190 RYTYSTLITHFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFS 249

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +K     PD + + +MI  +    +   A+ L  +M A
Sbjct: 250 RLKRSGISPDLVAYNSMINVFGKAKLFREARLLLPEMRA 288


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 160/326 (49%), Gaps = 2/326 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E  +++ E MLS G  P +  Y  L+    + G L  A   +N+M+ +  C+P+V TY+I
Sbjct: 389 EAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQ-IKGCEPNVITYTI 447

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  R +    +L EMS  G+  +AV YN +I    K +K ++  + F  M  S 
Sbjct: 448 LIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM-SSK 506

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PDIFT NS+I         E+    Y +  L GV A+  T N L  ++ R G   + 
Sbjct: 507 GCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEA 566

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M  R      +TYN +I+   +AG+IEK    F+ M  +G+ PN+I+   L++ 
Sbjct: 567 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 626

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G I      LR + +  +  D   +N +I+   + G  ++   LF  ++     PD
Sbjct: 627 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 686

Query: 311 NITFATMIQAYNALGMTEAAQNLENK 336
            IT+ T+I  +   GM + A  L ++
Sbjct: 687 AITYNTLISWHCKEGMFDDAHLLLSR 712



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 4/289 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   E+A  + + M   GL  +   Y  L+SA  +   + +A +   DM S   CKPD
Sbjct: 453 CKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSS-KGCKPD 511

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           ++T++ LI    K ++F+    +  +M   G+  + +TYNT+I  + +    +E     +
Sbjct: 512 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 571

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+  G C  D  T N +I A   +GNIEK    + +    G+  +  + NIL     R 
Sbjct: 572 DMLFRG-CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRT 630

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G        +  M  R   P +VTYN +I    K G  ++    F K++  G+ P++ITY
Sbjct: 631 GNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITY 690

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +L+S + K G+      +L +  +S  I +   +  ++S + + GD E
Sbjct: 691 NTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 151/360 (41%), Gaps = 32/360 (8%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  L + M   G  P+  VY  L+ A  + G ++E    + +M  +  C PDV T++ 
Sbjct: 252 DSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMG-CIPDVNTFND 310

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY--------------------------- 103
            I    K  R     K++  M   G   ++ TY                           
Sbjct: 311 AIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPN 370

Query: 104 ----NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
               NT+I+GY    + +E ++     + S GC PDIFT N++I      G +    +  
Sbjct: 371 VVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELM 430

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           NE  + G + ++ T  IL   + + G  ++ R+V+D M  +      V YN +I    K 
Sbjct: 431 NEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKD 490

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
             ++     F  M  +G KP+  T+ SL+    K     +   + + +    VI +T  +
Sbjct: 491 EKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITY 550

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I A+ + G +++  +L   M  R C  D+IT+  +I+A    G  E    L   M++
Sbjct: 551 NTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS 610



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 153/402 (38%), Gaps = 68/402 (16%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK- 62
           LG   + +    L   M  +G+     ++  ++  YG++GL  +A   + DM+ V  C+ 
Sbjct: 139 LGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEP 198

Query: 63  ----------------------------------PDVYTYSILIKSCTKFHRFDLIEKIL 88
                                             P VYT+ +++K+    +  D    +L
Sbjct: 199 TFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALL 258

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            +M+  G   +A+ Y T+I    K  +  E+      M+   GC PD+ T N  I     
Sbjct: 259 KDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLM-GCIPDVNTFNDAIHGLCK 317

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD------------- 195
              I +  K  +   L G   +  T  +L     R G  D+ R +++             
Sbjct: 318 MLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTL 377

Query: 196 ---------------FMQKRFFF----PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
                           M +        P + TYN +I    K G++    E   +M+ +G
Sbjct: 378 INGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG 437

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
            +PN ITY  L+  + K G + +  ++L ++    + L+   +NC+ISA  +   V+   
Sbjct: 438 CEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDAL 497

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +F  M  + C PD  TF ++I     +   E A  L   M+
Sbjct: 498 NMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 539



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 101/240 (42%), Gaps = 8/240 (3%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYN 160
            Y  +ID  G A +F+  ++    M + G      +F L  ++  YG +G   +  +   
Sbjct: 131 VYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFIL--IMKHYGRAGLPGQATRLL- 187

Query: 161 EFNLMGV---KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
             ++ GV   +   ++ N++            + +V   M  +   PTV T+ +V++   
Sbjct: 188 -LDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALC 246

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
               ++      K M   G  PN+I Y +L+ A SK G + +V  +L ++     I D  
Sbjct: 247 LVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVN 306

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            FN  I    +   + +  +L   M  R   P++ T+  ++     +G  + A+ L NK+
Sbjct: 307 TFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV 366



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 10/225 (4%)

Query: 119 MESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           ME    A  + G CH  D++ +  +I   G +G  +  +    +    G+        ++
Sbjct: 113 MELFQWAGTQKGYCHMFDVYYM--LIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILI 170

Query: 178 TKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
            K YGRAG+  +  R ++D        PT  +YN+V++        + +   F +M  +G
Sbjct: 171 MKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKG 230

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDS---ILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           + P   T+  ++ A     L+ +VDS   +L+ +     + +   +  +I A  + G V 
Sbjct: 231 ISPTVYTFGVVMKALC---LVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVN 287

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++ +L   M    C+PD  TF   I     +     A  L ++M+
Sbjct: 288 EVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRML 332


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  143 bits (361), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 174/345 (50%), Gaps = 4/345 (1%)

Query: 1   MVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  +   A  + + +++ GL P+  +Y  L++ Y Q+G L+ AFST   MKS 
Sbjct: 160 ILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS- 218

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              KPD  TY+ LI    K  R    + +L EM   G+  +  T+NT+ID YG+  + E+
Sbjct: 219 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 278

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                S M E+G   P++ +  S+++A+  +G I +     ++     V  + Q  N + 
Sbjct: 279 CFIVLSEMQENG-LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAII 337

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y   G  D+   +++ M+     P++VTYN++I+       I + EE    + +  + 
Sbjct: 338 DAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLI 397

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++++Y +L+SA    G I K   + +++    +      ++ +IS  G AG + +M  L
Sbjct: 398 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYL 457

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           +  M + + VP N     M++AY+  G    A++L  +M+  + N
Sbjct: 458 YQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 502



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 145/305 (47%), Gaps = 2/305 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M+  GLKP+   Y  L+S   ++G + E  + +++M S     PD +TYSIL    
Sbjct: 72  LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS-QKMVPDGFTYSILFDGL 130

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           ++      +  +  +    G+     T + +++G  K  K    E    ++V +G   P 
Sbjct: 131 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG-LVPT 189

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
               N++I+ Y  +G +E     + +     +K D  T N L     +A      + ++ 
Sbjct: 190 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLM 249

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            MQ     PTV T+N +I+ +G+ G +EK      +M+  G+KPN ++Y S+V+A+ K G
Sbjct: 250 EMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNG 309

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I +  +IL  + + DV+ +   +N II AY + G  ++   L   MK     P  +T+ 
Sbjct: 310 KIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 369

Query: 316 TMIQA 320
            +I+ 
Sbjct: 370 LLIKG 374



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 115/245 (46%), Gaps = 4/245 (1%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           +A +YN +I G  +A +  +    F  M E     P+  T N+MI  +   G++E   + 
Sbjct: 14  NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERA-VLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
            ++    G+K +  T N+L     RAG   +  +++D M  +   P   TY+I+ +   +
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
            G  + M   F K    G+     T   L++   K G +   + +L+ + N+ ++     
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 192

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +N +I+ Y Q G++E     F  MK RH  PD+IT+  +I   N L   E   N ++ ++
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALI---NGLCKAERITNAQDLLM 249

Query: 339 AMKEN 343
            M++N
Sbjct: 250 EMQDN 254



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 125/293 (42%), Gaps = 34/293 (11%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+ ++Y+++I    +  R     ++  EM+   +  + +TYNT+IDG+ K    E     
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 123 FSAMV--------------ESGGCH--------------------PDIFTLNSMISAYGN 148
              MV               SG C                     PD FT + +      
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +G+ + M   + ++   GV     T +IL     + G       V+  +      PT V 
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 192

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +I  + + G +E     F +MK R +KP+ ITY +L++   KA  I     +L +++
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           ++ V      FN +I AYG+ G +EK   +   M+E    P+ +++ +++ A+
Sbjct: 253 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 305


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 183/372 (49%), Gaps = 44/372 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L KC +      +F+ M S G+  SV  YTAL++AYG++G  + +   ++ MK+     
Sbjct: 156 LLDKCLE------VFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKN-DKIS 208

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTII-------------- 107
           P + TY+ +I +C +    ++ +  + AEM + GI+   VTYNT++              
Sbjct: 209 PSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEM 268

Query: 108 ------DG---------------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
                 DG               +GK ++ E++    S M  SGG  PDI + N ++ AY
Sbjct: 269 VFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMA-SGGSLPDITSYNVLLEAY 327

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             SG+I++    +++    G   +  T ++L   +G++G YD +R +   M+     P  
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TYNI+IE FG+ G+ +++   F  M    ++P+  TY  ++ A  K GL      IL+ 
Sbjct: 388 ATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQY 447

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +  +D++  +  +  +I A+GQA   E+    F TM E    P   T+ +++ ++   G+
Sbjct: 448 MTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGL 507

Query: 327 TEAAQNLENKMI 338
            + ++ + ++++
Sbjct: 508 VKESEAILSRLV 519



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 160/345 (46%), Gaps = 43/345 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILI 72
           LF  M  +G++P +  Y  L+SA    GL DEA   F T+ND   V    PD+ TYS L+
Sbjct: 234 LFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIV----PDLTTYSHLV 289

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
           ++  K  R + +  +L+EM+  G      +YN +++ Y K+   +E    F  M ++ GC
Sbjct: 290 ETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM-QAAGC 348

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG---------- 182
            P+  T + +++ +G SG  + + + + E        D  T NIL + +G          
Sbjct: 349 TPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVT 408

Query: 183 -------------------------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
                                    + G+++  R ++ +M      P+   Y  VIE FG
Sbjct: 409 LFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFG 468

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           +A   E+    F  M   G  P+  TY SL+ ++++ GL+ + ++IL ++ +S +  +  
Sbjct: 469 QAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRD 528

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
            FN  I AY Q G  E+  + ++ M++  C PD  T   ++  Y+
Sbjct: 529 TFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 162/315 (51%), Gaps = 3/315 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+  +YT ++S  G+ GLLD+     ++M S    +  V++Y+ LI +  +  R++   
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSR-SVFSYTALINAYGRNGRYETSL 196

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           ++L  M    I  S +TYNT+I+   +    +E +   F+ M    G  PDI T N+++S
Sbjct: 197 ELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHE-GIQPDIVTYNTLLS 255

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A    G  ++ E  +   N  G+  D+ T + L +++G+    +K+  ++  M      P
Sbjct: 256 ACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLP 315

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            + +YN+++E + K+G I++    F +M+  G  PN+ TY  L++ + ++G    V  + 
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++++S+   D   +N +I  +G+ G  +++  LF  M E +  PD  T+  +I A    
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKG 435

Query: 325 GMTEAAQNLENKMIA 339
           G+ E A+ +   M A
Sbjct: 436 GLHEDARKILQYMTA 450



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 154/340 (45%), Gaps = 5/340 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK ++ E+ S L   M S G  P +  Y  L+ AY +SG + EA    + M++   C P
Sbjct: 292 FGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAG-CTP 350

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TYS+L+    +  R+D + ++  EM     +  A TYN +I+ +G+   F+E+ + F
Sbjct: 351 NANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLF 410

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MVE     PD+ T   +I A G  G  E   K         +    +    + +++G+
Sbjct: 411 HDMVEEN-IEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQ 469

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A +Y++     + M +    P++ TY+ ++ +F + G +++ E    ++   G+  N  T
Sbjct: 470 AALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDT 529

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + + + AY + G   +       +E S    D      ++S Y  A  V++  E F  MK
Sbjct: 530 FNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMK 589

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
               +P  + +  M+  Y   G TE   ++   +  M  N
Sbjct: 590 ASDILPSIMCYCMMLAVY---GKTERWDDVNELLEEMLSN 626



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 136/279 (48%), Gaps = 2/279 (0%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKP+ + Y+I+I    +    D   ++  EM   G+  S  +Y  +I+ YG+  ++E   
Sbjct: 137 CKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSL 196

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                M ++    P I T N++I+A    G + E +   + E    G++ DI T N L  
Sbjct: 197 ELLDRM-KNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLS 255

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +    G+ D+   V   M      P + TY+ ++ETFGK   +EK+ +   +M   G  P
Sbjct: 256 ACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLP 315

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  +Y  L+ AY+K+G I +   +  Q++ +    +   ++ +++ +GQ+G  + + +LF
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           L MK  +  PD  T+  +I+ +   G  +    L + M+
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMV 414



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 1/218 (0%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M     C P+      MIS  G  G ++K  + ++E    GV   + +   L  +YG
Sbjct: 128 FKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYG 187

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNS 241
           R G Y+    ++D M+     P+++TYN VI    + G   E +   F +M+H G++P+ 
Sbjct: 188 RNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDI 247

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L+SA +  GL  + + + R + +  ++ D   ++ ++  +G+   +EK+ +L   
Sbjct: 248 VTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSE 307

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M     +PD  ++  +++AY   G  + A  + ++M A
Sbjct: 308 MASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQA 345



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 127/270 (47%), Gaps = 2/270 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + G+  + +    LF  M S    P    Y  L+  +G+ G   E  +  +DM    + +
Sbjct: 361 LFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE-ENIE 419

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+ TY  +I +C K    +   KIL  M+   I  S+  Y  +I+ +G+A  +EE   +
Sbjct: 420 PDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVA 479

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ M E G  +P I T +S++ ++   G +++ E   +     G+  +  T N   ++Y 
Sbjct: 480 FNTMHEVG-SNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYK 538

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G +++       M+K    P   T   V+  +  A  +++  E F++MK   + P+ +
Sbjct: 539 QGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIM 598

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
            YC +++ Y K      V+ +L ++ ++ V
Sbjct: 599 CYCMMLAVYGKTERWDDVNELLEEMLSNRV 628



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 107/227 (47%), Gaps = 8/227 (3%)

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           + G  KAK  + +  + S  VE G    D+ +L + +S+    G+I +        ++  
Sbjct: 47  VAGKIKAKTKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARC------LDIFK 100

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKM 225
            K  +    ++ K +   G + +   +  +MQ++ +  P    Y I+I   G+ G ++K 
Sbjct: 101 NKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKC 160

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
            E F +M  +G+  +  +Y +L++AY + G       +L +++N  +      +N +I+A
Sbjct: 161 LEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINA 220

Query: 286 YGQAG-DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
             + G D E +  LF  M+     PD +T+ T++ A    G+ + A+
Sbjct: 221 CARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAE 267


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 141/276 (51%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+VYTY+IL+++     R +    ++ +M   G   +AVTYNT++  + +A + +  E  
Sbjct: 8   PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 67

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            S M E G   P++ T NSM++    +G +E   K ++E    G+  D+ + N L   Y 
Sbjct: 68  VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC 127

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   +  +V   M +R   P VVT+  +I    KAG++E+      +M+ RG++ N +
Sbjct: 128 KVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEV 187

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+ +L+  + K G +      + ++    +      +N +I+ Y + G ++   EL   M
Sbjct: 188 TFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREM 247

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + +   PD +T++T+I  Y  +G  ++A  L  KM+
Sbjct: 248 EAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKML 283



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 159/328 (48%), Gaps = 1/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +   M   G  P+   Y  LV+A+ ++G LD A   ++ M+   + KP++ T++ 
Sbjct: 27  EEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNS 86

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K  R +   K+  EM   G+    V+YNT++ GY K     E  + FS M + G
Sbjct: 87  MVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRG 146

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T  S+I A   +GN+E+      +    G++ +  T   L   + + G  D  
Sbjct: 147 -LVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 205

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              ++ M+K    P+VV YN +I  + K G ++   E  ++M+ + +KP+ +TY +++S 
Sbjct: 206 LLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISG 265

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K G +     + +++    V+ D   ++ +I    +   +    ELF  M +    PD
Sbjct: 266 YCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 325

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
             T+ T+I  +   G  E A +L ++MI
Sbjct: 326 EFTYTTLIDGHCKEGNVEKALSLHDEMI 353



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 158/302 (52%), Gaps = 3/302 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+  G+ P+V  Y  LV A    G L+EA   + DM+  + C P+  TY+ L+ +  +  
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRG-AGCAPNAVTYNTLVAAFCRAG 59

Query: 80  RFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
             D  E++++ M   G  + + VT+N++++G  KA + E     F  MV   G  PD+ +
Sbjct: 60  ELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVRE-GLAPDVVS 118

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
            N+++S Y   G + +    ++E    G+  D+ T   L  +  +AG  ++  +++  M+
Sbjct: 119 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 178

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +R      VT+  +I+ F K G ++      ++M+  G++P+ + Y +L++ Y K G + 
Sbjct: 179 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 238

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
               ++R++E   V  D   ++ IIS Y + G+++   +L   M ++  +PD IT++++I
Sbjct: 239 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 298

Query: 319 QA 320
           + 
Sbjct: 299 RG 300



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 146/316 (46%), Gaps = 4/316 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E A  +F+ M+ +GL P V  Y  L+S Y + G L E+ +  ++M       
Sbjct: 90  GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ-RGLV 148

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV T++ LI +  K    +    ++A+M   G+  + VT+  +IDG+ K    ++   +
Sbjct: 149 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 208

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M + G   P +   N++I+ Y   G ++   +   E     VK D+ T + +   Y 
Sbjct: 209 VEEMRKCG-IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 267

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D    +   M K+   P  +TY+ +I    +   +    E F+ M   G++P+  
Sbjct: 268 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 327

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+  + K G + K  S+  ++    V+ D   ++ +I+   ++   ++   L   +
Sbjct: 328 TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL 387

Query: 303 KERHCVPDNITFATMI 318
                VPDNI +  ++
Sbjct: 388 YHEDPVPDNIKYDALM 403



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 148/337 (43%), Gaps = 17/337 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           EQA  L   M   GL+ +   +TAL+  + + G LD+A   + +M+     +P V  Y+ 
Sbjct: 168 EQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG-IQPSVVCYNA 226

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  R DL  +++ EM    ++   VTY+TII GY K    +        M++ G
Sbjct: 227 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 286

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T +S+I        +    + +     +GV+ D  T   L   + + G  +K 
Sbjct: 287 -VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKA 345

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            S+ D M ++   P VVTY+++I    K+   ++      K+ H    P++I Y +L+  
Sbjct: 346 LSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLC 405

Query: 251 YSKA---------------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            SKA               GL+ + D + + + + +  LD   ++ +I  + + G+V K 
Sbjct: 406 CSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKA 465

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
                 M      P++ +  ++++     GM   A N
Sbjct: 466 LSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADN 502



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 147/357 (41%), Gaps = 54/357 (15%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   + A L  E M   G++PSV  Y AL++ Y + G +D A   I +M++    K
Sbjct: 195 GFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEA-KRVK 253

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TYS +I    K    D   ++  +M   G+   A+TY+++I G  + K+  +    
Sbjct: 254 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL 313

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT---- 178
           F  M++ G   PD FT  ++I  +   GN+EK    ++E    GV  D+ T ++L     
Sbjct: 314 FENMLQLG-VQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLS 372

Query: 179 ----------------------------------------------KSYGRAGMYDKMRS 192
                                                         K +   G+  +   
Sbjct: 373 KSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADK 432

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V   M  R +      Y+I+I    + G++ K   + K+M   G  PNS +  SLV    
Sbjct: 433 VYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLF 492

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           + G++++ D+ ++ +     + D      +I    + G+V+ + ++   M     +P
Sbjct: 493 EEGMVVEADNAIQDLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLP 549



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 1/108 (0%)

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M   G+ PN  TY  LV A    G + +   ++  +  +    +   +N +++A+ +AG+
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 292 VEKMGELFLTMKER-HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++    +   M+E  +  P+ +TF +M+      G  E A+ + ++M+
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMV 108


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 160/326 (49%), Gaps = 2/326 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E  +++ E MLS G  P +  Y  L+    + G L  A   +N+M+ +  C+P+V TY+I
Sbjct: 371 EAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQ-IKGCEPNVITYTI 429

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  R +    +L EMS  G+  +AV YN +I    K +K ++  + F  M  S 
Sbjct: 430 LIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM-SSK 488

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PDIFT NS+I         E+    Y +  L GV A+  T N L  ++ R G   + 
Sbjct: 489 GCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEA 548

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M  R      +TYN +I+   +AG+IEK    F+ M  +G+ PN+I+   L++ 
Sbjct: 549 LKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILING 608

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G I      LR + +  +  D   +N +I+   + G  ++   LF  ++     PD
Sbjct: 609 LCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPD 668

Query: 311 NITFATMIQAYNALGMTEAAQNLENK 336
            IT+ T+I  +   GM + A  L ++
Sbjct: 669 AITYNTLISWHCKEGMFDDAHLLLSR 694



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 4/289 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   E+A  + + M   GL  +   Y  L+SA  +   + +A +   DM S   CKPD
Sbjct: 435 CKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSS-KGCKPD 493

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           ++T++ LI    K ++F+    +  +M   G+  + +TYNT+I  + +    +E     +
Sbjct: 494 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 553

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+  G C  D  T N +I A   +GNIEK    + +    G+  +  + NIL     R 
Sbjct: 554 DMLFRG-CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRT 612

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G        +  M  R   P +VTYN +I    K G  ++    F K++  G+ P++ITY
Sbjct: 613 GNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITY 672

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +L+S + K G+      +L +  +S  I +   +  ++S + + GD E
Sbjct: 673 NTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 151/360 (41%), Gaps = 32/360 (8%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  L + M   G  P+  VY  L+ A  + G ++E    + +M  +  C PDV T++ 
Sbjct: 234 DSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMG-CIPDVNTFND 292

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY--------------------------- 103
            I    K  R     K++  M   G   ++ TY                           
Sbjct: 293 AIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPN 352

Query: 104 ----NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
               NT+I+GY    + +E ++     + S GC PDIFT N++I      G +    +  
Sbjct: 353 VVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELM 412

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           NE  + G + ++ T  IL   + + G  ++ R+V+D M  +      V YN +I    K 
Sbjct: 413 NEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKD 472

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
             ++     F  M  +G KP+  T+ SL+    K     +   + + +    VI +T  +
Sbjct: 473 EKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITY 532

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I A+ + G +++  +L   M  R C  D+IT+  +I+A    G  E    L   M++
Sbjct: 533 NTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMS 592



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 153/402 (38%), Gaps = 68/402 (16%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK- 62
           LG   + +    L   M  +G+     ++  ++  YG++GL  +A   + DM+ V  C+ 
Sbjct: 121 LGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEP 180

Query: 63  ----------------------------------PDVYTYSILIKSCTKFHRFDLIEKIL 88
                                             P VYT+ +++K+    +  D    +L
Sbjct: 181 TFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACALL 240

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            +M+  G   +A+ Y T+I    K  +  E+      M+   GC PD+ T N  I     
Sbjct: 241 KDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLM-GCIPDVNTFNDAIHGLCK 299

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD------------- 195
              I +  K  +   L G   +  T  +L     R G  D+ R +++             
Sbjct: 300 MLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTL 359

Query: 196 ---------------FMQKRFFF----PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
                           M +        P + TYN +I    K G++    E   +M+ +G
Sbjct: 360 INGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG 419

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
            +PN ITY  L+  + K G + +  ++L ++    + L+   +NC+ISA  +   V+   
Sbjct: 420 CEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDAL 479

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +F  M  + C PD  TF ++I     +   E A  L   M+
Sbjct: 480 NMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDML 521



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 102/240 (42%), Gaps = 8/240 (3%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD-IFTLNSMISAYGNSGNIEKMEKWYN 160
            Y  +ID  G A +F+ +++    M + G    + +F L  ++  YG +G   +  +   
Sbjct: 113 VYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFIL--IMKHYGRAGLPGQATRLL- 169

Query: 161 EFNLMGV---KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
             ++ GV   +   ++ N++            + +V   M  +   PTV T+ +V++   
Sbjct: 170 -LDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALC 228

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
               ++      K M   G  PN+I Y +L+ A  K G + +V  +L ++     I D  
Sbjct: 229 LVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVN 288

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            FN  I    +   + +  +L   M  R   P++ T+  ++     +G  + A+ L NK+
Sbjct: 289 TFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV 348



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 10/225 (4%)

Query: 119 MESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           ME    A  + G CH  D++ +  +I   G +G  + ++    +    G+        ++
Sbjct: 95  MELFQWAGTQKGYCHMFDVYYM--LIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILI 152

Query: 178 TKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
            K YGRAG+  +  R ++D        PT  +YN+V++        + +   F +M  +G
Sbjct: 153 MKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKG 212

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDS---ILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           + P   T+  ++ A     L+ +VDS   +L+ +     + +   +  +I A  + G V 
Sbjct: 213 ISPTVYTFGVVMKALC---LVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVN 269

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++ +L   M    C+PD  TF   I     +     A  L ++M+
Sbjct: 270 EVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRML 314


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 174/345 (50%), Gaps = 4/345 (1%)

Query: 1   MVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  +   A  + + +++ GL P+  +Y  L++ Y Q+G L+ AFST   MKS 
Sbjct: 208 ILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS- 266

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              KPD  TY+ LI    K  R    + +L EM   G+  +  T+NT+ID YG+  + E+
Sbjct: 267 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 326

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                S M E+G   P++ +  S+++A+  +G I +     ++     V  + Q  N + 
Sbjct: 327 CFIVLSEMQENG-LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAII 385

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y   G  D+   +++ M+     P++VTYN++I+       I + EE    + +  + 
Sbjct: 386 DAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLI 445

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++++Y +L+SA    G I K   + +++    +      ++ +IS  G AG + +M  L
Sbjct: 446 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYL 505

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           +  M + + VP N     M++AY+  G    A++L  +M+  + N
Sbjct: 506 YQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 550



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 145/305 (47%), Gaps = 2/305 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M+  GLKP+   Y  L+S   ++G + E  + +++M S     PD +TYSIL    
Sbjct: 120 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS-QKMVPDGFTYSILFDGL 178

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           ++      +  +  +    G+     T + +++G  K  K    E    ++V +G   P 
Sbjct: 179 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG-LVPT 237

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
               N++I+ Y  +G +E     + +     +K D  T N L     +A      + ++ 
Sbjct: 238 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLM 297

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            MQ     PTV T+N +I+ +G+ G +EK      +M+  G+KPN ++Y S+V+A+ K G
Sbjct: 298 EMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNG 357

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I +  +IL  + + DV+ +   +N II AY + G  ++   L   MK     P  +T+ 
Sbjct: 358 KIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 417

Query: 316 TMIQA 320
            +I+ 
Sbjct: 418 LLIKG 422



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 149/355 (41%), Gaps = 37/355 (10%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ LG+     +A   F ++ S G +P    +   V A   +G L EA   +  M     
Sbjct: 2   LLSLGRHADVRRA---FGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGA 58

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+ ++Y+++I    +  R     ++  EM+   +  + +TYNT+IDG+ K    E   
Sbjct: 59  PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 118

Query: 121 SSFSAMV--------------ESGGCH--------------------PDIFTLNSMISAY 146
                MV               SG C                     PD FT + +    
Sbjct: 119 RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 178

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +G+ + M   + ++   GV     T +IL     + G       V+  +      PT 
Sbjct: 179 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 238

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V YN +I  + + G +E     F +MK R +KP+ ITY +L++   KA  I     +L +
Sbjct: 239 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 298

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           ++++ V      FN +I AYG+ G +EK   +   M+E    P+ +++ +++ A+
Sbjct: 299 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 353



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 129/284 (45%), Gaps = 5/284 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNTIIDGYGKAKKFEEME 120
           +PD + ++  +++C           +L  M   G    +A +YN +I G  +A +  +  
Sbjct: 24  RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 83

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M E     P+  T N+MI  +   G++E   +  ++    G+K +  T N+L   
Sbjct: 84  EVFDEMTERA-VLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSG 142

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             RAG   +  +++D M  +   P   TY+I+ +   + G  + M   F K    G+   
Sbjct: 143 LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIG 202

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             T   L++   K G +   + +L+ + N+ ++     +N +I+ Y Q G++E     F 
Sbjct: 203 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFG 262

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
            MK RH  PD+IT+  +I   N L   E   N ++ ++ M++N 
Sbjct: 263 QMKSRHIKPDHITYNALI---NGLCKAERITNAQDLLMEMQDNG 303


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 157/323 (48%), Gaps = 6/323 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ LG   +  +A  LFE +  +GL+P    Y AL+  Y ++G L +A   +++M+  + 
Sbjct: 283 ILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEK-AG 341

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KPD  TYS+LI       R++    +L EM    ++ ++  ++ I+  Y   +   E +
Sbjct: 342 VKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANY---RDKGEWQ 398

Query: 121 SSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            SF  +  ++S G  PD    N MI  +G    ++     +      G+  DI T N L 
Sbjct: 399 KSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLI 458

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + ++G +D    +   MQ+R + P + TYNI+I + G+    E++  +  KM+ +G++
Sbjct: 459 DCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQ 518

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PNSITY +LV  Y K+G        L  ++++     +  +N +I+AY Q G  E     
Sbjct: 519 PNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNA 578

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
           F  M      P  +   ++I A+
Sbjct: 579 FRLMTTEGLTPSLLALNSLINAF 601



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 162/336 (48%), Gaps = 9/336 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ ++  +A LL +  +   L      Y AL+ A  ++G +++A + ++ M+     +P
Sbjct: 149 LGRSEKLYEAFLLSQRQVLTPL-----TYNALIGACARNGDVEKALNLMSKMRR-DGYQP 202

Query: 64  DVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           D   YS +I+  T+ ++ D  +++K+ AE+    IE      N II G+ KA        
Sbjct: 203 DFVNYSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAGD-PTRAM 261

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F AM +S G +P   TL ++I A GNSG   + E  + E    G++   +  N L K Y
Sbjct: 262 RFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGY 321

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R G       V+  M+K    P   TY+++I+ +  AG  E      K+M+   ++PNS
Sbjct: 322 VRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNS 381

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             +  +++ Y   G   K   +L+ +++S V  D  F+N +I  +G+   ++     F  
Sbjct: 382 YVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFER 441

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M      PD +T+ T+I  +   G  + A+ L ++M
Sbjct: 442 MLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEM 477



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 150/332 (45%), Gaps = 2/332 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V   K   P +A     +  S+GL P      A++ A G SG   EA +   +++  + 
Sbjct: 248 IVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRE-NG 306

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            +P    Y+ L+K   +       E +++EM   G++    TY+ +ID Y  A ++E   
Sbjct: 307 LEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESAR 366

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M E+    P+ +  + +++ Y + G  +K  +   +    GV+ D    N++  +
Sbjct: 367 IVLKEM-EASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDT 425

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           +G+    D   +  + M      P +VT+N +I+   K+G  +  EE F +M+ RG  P 
Sbjct: 426 FGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPC 485

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY  ++++  +     +V + L ++++  +  ++  +  ++  YG++G      E   
Sbjct: 486 ITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLE 545

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
            +K     P +  +  +I AY   G++E A N
Sbjct: 546 VLKSTGFKPTSTMYNALINAYAQRGLSELAVN 577



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 155/321 (48%), Gaps = 10/321 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A ++ + M +  ++P+  V++ +++ Y   G   ++F  + DMKS S  +PD + Y++
Sbjct: 363 ESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKS-SGVQPDRHFYNV 421

Query: 71  LIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +I +  K+    H     E++L+E    GI    VT+NT+ID + K+ + +  E  FS M
Sbjct: 422 MIDTFGKYNCLDHAMATFERMLSE----GIPPDIVTWNTLIDCHCKSGRHDMAEELFSEM 477

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            +  G  P I T N MI++ G     E++  + ++    G++ +  T   L   YG++G 
Sbjct: 478 -QQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGR 536

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           +      ++ ++   F PT   YN +I  + + G  E     F+ M   G+ P+ +   S
Sbjct: 537 FSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNS 596

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++A+ +     +  ++L+ ++ +++  D   +  ++ A  +    +K+  ++  M    
Sbjct: 597 LINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVASG 656

Query: 307 CVPDNITFATMIQAYNALGMT 327
           C PD    A +  A   +  T
Sbjct: 657 CTPDRKARAMLRSALRYMKQT 677


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 173/339 (51%), Gaps = 5/339 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++ G C    +A  +++ M+S+G+KPS+  Y+AL+ A G+ G   +  + + +MKS+  
Sbjct: 210 LLLPGFC---NEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIG- 265

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            +P++YTY+I I++  +  R D    I  EM   G     +TY  +ID    A K ++ +
Sbjct: 266 LRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAK 325

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +  M  S    PD  T  +++  +G  G++E +++++NE  + G   D+ T  IL ++
Sbjct: 326 ELYVKMRASSH-SPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEA 384

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             ++G  D+   ++D M  +  FP + TYN +I    KA  +++  E  + M+  G+KP 
Sbjct: 385 LCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPT 444

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + +Y   +  Y K+G   K       ++   ++      N  +    + G + +  ++F 
Sbjct: 445 AFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFN 504

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            + +    PD++T+  +++ Y+  G  + A  L ++MI+
Sbjct: 505 DLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMIS 543



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 150/315 (47%), Gaps = 2/315 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK    E     +  M  DG  P V  YT L+ A  +SG +D AF  + D+ +     P
Sbjct: 350 FGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDML-DVMTTKGIFP 408

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +++TY+ +I    K  R D   ++L  M  LG++ +A +Y   ID YGK+    +   +F
Sbjct: 409 NLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTF 468

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M +  G  P I   N+ +     +G I + E  +N+ +  G+  D  T N+L K Y +
Sbjct: 469 ETM-KKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSK 527

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  DK   ++  M  +   P V+  N +I T  KAG ++   + F ++K+  + P  +T
Sbjct: 528 AGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVT 587

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L++   K G I+K   +   +  S    +T  FN ++    +   V+   ++F  M 
Sbjct: 588 YNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMT 647

Query: 304 ERHCVPDNITFATMI 318
             +C PD +T+ T+I
Sbjct: 648 MMNCNPDVLTYNTII 662



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 166/343 (48%), Gaps = 6/343 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV LG+     +   L E M S GL+P++  YT  + A G++  +D+A+    +M     
Sbjct: 242 MVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDD-EG 300

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C PDV TY++LI +     + D  +++  +M         VTY T++D +GK    E ++
Sbjct: 301 CGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVK 360

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             ++ M E  G  PD+ T   +I A   SG++++     +     G+  ++ T N +   
Sbjct: 361 RFWNEM-EVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICG 419

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             +A   D+   +++ M+     PT  +Y + I+ +GK+G   K  + F+ MK RG+ P 
Sbjct: 420 LLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMP- 478

Query: 241 SITYCSLVSAYSKA--GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           SI  C+  S Y+ A  G I + + I   +    +  D+  +N ++  Y +AG ++K  +L
Sbjct: 479 SIAACN-ASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQL 537

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
              M  + C PD +   ++I      G  +AA  +  ++  +K
Sbjct: 538 LSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLK 580



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 164/374 (43%), Gaps = 35/374 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA--------------- 48
           LG+ ++ + A  +F+ M  +G  P V  YT L+ A   +G LD+A               
Sbjct: 280 LGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPD 339

Query: 49  ----------FSTINDMKSVSDC---------KPDVYTYSILIKSCTKFHRFDLIEKILA 89
                     F  + D+++V             PDV TY+ILI++  K    D    +L 
Sbjct: 340 RVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLD 399

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
            M+  GI  +  TYNT+I G  KA++ +E       M ES G  P  F+    I  YG S
Sbjct: 400 VMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENM-ESLGVKPTAFSYVLFIDYYGKS 458

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G+  K    +      G+   I   N    +    G   +   + + + K    P  VTY
Sbjct: 459 GDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTY 518

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N++++ + KAG I+K  +   +M  +G +P+ +   SL++   KAG +     +  +++N
Sbjct: 519 NMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKN 578

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
             +      +N +++  G+ G + K  ELF +M E  C P+ ITF +++   +     + 
Sbjct: 579 LKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDL 638

Query: 330 AQNLENKMIAMKEN 343
           A  +  +M  M  N
Sbjct: 639 ALKMFCRMTMMNCN 652



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 156/321 (48%), Gaps = 8/321 (2%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E+A  LFE M S G  P+   Y  L+ A+G+S  +++ +   ++M+S   C+P+  T++I
Sbjct: 813  EKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRS-RGCEPNAITHNI 871

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            +I +  K +  +    +  E+       +  TY  +IDG  KA + E+    F  M++ G
Sbjct: 872  IISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYG 931

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
             C P+    N +I+ +G SG I+   + + +    G++ D+++  IL +     G  D+ 
Sbjct: 932  -CGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEA 990

Query: 191  RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
                + ++     P  V+YN +I   GK+  +++    F +MK+RG+ P+  TY +L+  
Sbjct: 991  VQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILH 1050

Query: 251  YSKAGLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGELFLTMKERHC 307
               AG   KVD  ++  E   ++   P    +N +I  +  +G+ ++   +F  M    C
Sbjct: 1051 LGIAG---KVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGC 1107

Query: 308  VPDNITFATMIQAYNALGMTE 328
             P+  TFA +   Y   G+  
Sbjct: 1108 SPNTETFAQLPNKYPRAGLVH 1128



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 37/254 (14%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K  + EQA  +FE ML  G  P+  +Y  L++ +G+SG +D A      M      +P
Sbjct: 911  LLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVK-EGIRP 969

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            D+ +Y+IL++      R D   +   E+   G++   V+YN II+G GK+++ +E  S F
Sbjct: 970  DLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLF 1029

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            S M ++ G  PD++T N++I   G +G ++   K Y E  L+G++               
Sbjct: 1030 SEM-KNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLE--------------- 1073

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
                                P+V TYN +I     +G+ ++    FKKM   G  PN+ T
Sbjct: 1074 --------------------PSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTET 1113

Query: 244  YCSLVSAYSKAGLI 257
            +  L + Y +AGL+
Sbjct: 1114 FAQLPNKYPRAGLV 1127



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 152/317 (47%), Gaps = 2/317 (0%)

Query: 24   GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
            G+ P+++ Y  L+     S   ++A     DMKS +   P+ +TY++L+ +  K  R + 
Sbjct: 791  GIHPTLESYNCLMDGLLGSNFTEKALELFEDMKS-AGTHPNNFTYNLLLDAHGKSKRINK 849

Query: 84   IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            +  + +EM   G E +A+T+N II    K+    +    +  ++ SG   P   T   +I
Sbjct: 850  LYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELM-SGDFSPTPCTYGPLI 908

Query: 144  SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 +G  E+  K + E    G   +    NIL   +G++G  D    +   M K    
Sbjct: 909  DGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIR 968

Query: 204  PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
            P + +Y I++E     G I++  +YF+++K  G+ P++++Y  +++   K+  + +  S+
Sbjct: 969  PDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSL 1028

Query: 264  LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              +++N  +  D   +N +I   G AG V+   +++  ++     P   T+  +I+ ++ 
Sbjct: 1029 FSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSL 1088

Query: 324  LGMTEAAQNLENKMIAM 340
             G  + A ++  KM+ +
Sbjct: 1089 SGNKDQAFSVFKKMMVV 1105



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 146/299 (48%), Gaps = 3/299 (1%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            GK K+  +   L+  M S G +P+   +  ++SA  +S  L++A     ++ S  D  P 
Sbjct: 842  GKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMS-GDFSPT 900

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              TY  LI    K  R +   KI  EM   G   ++V YN +I+G+GK+ + +     F 
Sbjct: 901  PCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFK 960

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             MV+ G   PD+ +   ++     +G I++  +++ E  L G+  D  + N +    G++
Sbjct: 961  KMVKEG-IRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKS 1019

Query: 185  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
               D+  S+   M+ R   P + TYN +I   G AG ++   + +++++  G++P+  TY
Sbjct: 1020 RRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTY 1079

Query: 245  CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK-MGELFLTM 302
             +L+  +S +G   +  S+ +++       +T  F  + + Y +AG V    G +F+ +
Sbjct: 1080 NALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLVHNPFGAVFIGL 1138



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 14/260 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK------S 57
           L K ++ ++A  L E M S G+KP+   Y   +  YG+SG   +A  T   MK      S
Sbjct: 420 LLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPS 479

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           ++ C   +YT +       +  R    E I  ++   G+   +VTYN ++  Y KA + +
Sbjct: 480 IAACNASLYTLA-------ETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQID 532

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +     S M+ S GC PD+  +NS+I+    +G ++   K +     + +   + T NIL
Sbjct: 533 KATQLLSEMI-SKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNIL 591

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
               G+ G   K   +   M +    P  +T+N +++   K   ++   + F +M     
Sbjct: 592 LTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNC 651

Query: 238 KPNSITYCSLVSAYSKAGLI 257
            P+ +TY +++    + G I
Sbjct: 652 NPDVLTYNTIIYGLIREGRI 671



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 118/272 (43%), Gaps = 36/272 (13%)

Query: 94   LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153
            LGI  +  +YN ++DG   +   E+    F  M +S G HP+ FT N ++ A+G S  I 
Sbjct: 790  LGIHPTLESYNCLMDGLLGSNFTEKALELFEDM-KSAGTHPNNFTYNLLLDAHGKSKRIN 848

Query: 154  KMEKWYNEFNLMGVKADIQTLNILTK----------------------------SYG--- 182
            K+   Y+E    G + +  T NI+                              +YG   
Sbjct: 849  KLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLI 908

Query: 183  ----RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                +AG  ++   + + M      P  V YNI+I  FGK+G I+   E FKKM   G++
Sbjct: 909  DGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIR 968

Query: 239  PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            P+  +Y  LV      G I +      +++ + +  DT  +N II+  G++  +++   L
Sbjct: 969  PDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSL 1028

Query: 299  FLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            F  MK R   PD  T+  +I      G  + A
Sbjct: 1029 FSEMKNRGISPDLYTYNALILHLGIAGKVDVA 1060



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 146/356 (41%), Gaps = 42/356 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +  +  +A  +F  +   GL P    Y  L+  Y ++G +D+A   +++M S   C+P
Sbjct: 490 LAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMIS-KGCEP 548

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV   + LI +  K  R D   K+   +  L +  + VTYN ++ G GK  K  +    F
Sbjct: 549 DVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELF 608

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            +M ESG C P+  T NS++     +  ++   K +    +M    D+ T N +     R
Sbjct: 609 GSMTESG-CPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIR 667

Query: 184 AGMYDKMRSVMDFMQ-KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNS 241
            G  D   +   F Q K+F  P  VT   +I    + G +E   +   +  H+  ++ NS
Sbjct: 668 EGRID--YAFWFFHQMKKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNS 725

Query: 242 -----ITYCSLVSAYSKAGL--------------------IMKVDSILRQVENSDVILDT 276
                +  C L  A  +  +                    ++KV    ++  ++  + D 
Sbjct: 726 QFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDK 785

Query: 277 -----------PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
                        +NC++     +   EK  ELF  MK     P+N T+  ++ A+
Sbjct: 786 FTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAH 841



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 34/186 (18%)

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI-------EKMEEY------------ 228
           + M  V D MQK+  +  + TY  + +     G I        KM E             
Sbjct: 148 EDMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGL 207

Query: 229 ---------------FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
                          +K+M   GMKP+  TY +L+ A  + G   K+ ++L ++++  + 
Sbjct: 208 IHLLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLR 267

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            +   +   I A G+A  ++    +F  M +  C PD IT+  +I A  A G  + A+ L
Sbjct: 268 PNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKEL 327

Query: 334 ENKMIA 339
             KM A
Sbjct: 328 YVKMRA 333


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 177/341 (51%), Gaps = 4/341 (1%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK    ++A+ + E+M  + L P V  Y  L++     G ++EAF   ++M+++
Sbjct: 283 ILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENL 342

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PDV +Y+ LI  C ++ +     K+L EMS  G++ +AVT+N ++  Y K  K ++
Sbjct: 343 K-LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDD 401

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             ++ + M ESG   PD  T N++I+ Y  +GN+ +  +  +E     +K D  TLN + 
Sbjct: 402 ASNTITKMEESG-FSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTIL 460

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           ++  R    ++   ++   +KR +F   V+Y  +I  + K G++++  + + +MK + + 
Sbjct: 461 RTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEII 520

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+++TY  ++    + G   +  S L ++  S ++ D   +N I+  Y + GDVEK  + 
Sbjct: 521 PSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQF 580

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              M E    PD  T   +++     GM E A  L N  ++
Sbjct: 581 HNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVS 621



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 143/335 (42%), Gaps = 46/335 (13%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF---HRFDL 83
           PS  +    + AY QSG    AF     MK +   +P++ T + L+ S  ++   H    
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLR-LRPNLLTCNTLLNSLVRYPSSHSVSF 191

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             +   +   LGI  +  T+N +I GY    KF++     + M +   C PD  T N+++
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYN-CSPDNVTYNTIL 250

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A    G +        +    G+  +  T NIL   Y + G   +  +V++ M +    
Sbjct: 251 DALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLL 310

Query: 204 PTVVTYNIVIETFGKAGHIE--------------------------------KMEEYFK- 230
           P V TYN++I      G IE                                K+ E FK 
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 231 --KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
             +M  +G+KPN++T+  +V  Y K G +    + + ++E S    D   +N +I+ Y +
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 289 AGDVEKMGELFLTMKE---RHCVPDNITFATMIQA 320
           AG+   MGE F TM E   ++   D++T  T+++ 
Sbjct: 431 AGN---MGEAFRTMDEMGRKNMKMDSVTLNTILRT 462



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 135/308 (43%), Gaps = 4/308 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   + AS     M   G  P    Y  L++ Y ++G + EAF T+++M    + K D
Sbjct: 394 CKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGR-KNMKMD 452

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             T + ++++  +  + +   K+L+     G     V+Y T+I GY K    +     + 
Sbjct: 453 SVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWD 512

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E     P   T N +I      G  E+     NE    G+  D  T N +   Y R 
Sbjct: 513 EMKEKE-IIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCRE 571

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  +K     + M +  F P V T NI++      G +EK  + F     +G   +++TY
Sbjct: 572 GDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTY 631

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+++  K G +    ++L ++E  ++  D   +N II+A   +G + +  E    M E
Sbjct: 632 NTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLE 691

Query: 305 RHCVPDNI 312
           +  +P  +
Sbjct: 692 KGXLPXQV 699



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 93/215 (43%), Gaps = 11/215 (5%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P    L++ I AY  SG      + + +   + ++ ++ T N L  S  R   Y    SV
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVR---YPSSHSV 189

Query: 194 MDFMQKRF-------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
             F ++ F         P V T+NIVI  +      +   E+   M      P+++TY +
Sbjct: 190 -SFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNT 248

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++ A  K G +     +L  +++  ++ +   +N ++  Y + G +++   +   M + +
Sbjct: 249 ILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNN 308

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            +PD  T+  +I      G  E A  L ++M  +K
Sbjct: 309 LLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLK 343



 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R   P+    +  I  + ++G      + FKKMK   ++PN +T  +L+++  +      
Sbjct: 129 RLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHS 188

Query: 260 VDSILRQVENSDVIL----DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
           V S  R+  N  + L    +   FN +I  Y      +   E    M + +C PDN+T+ 
Sbjct: 189 V-SFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYN 247

Query: 316 TMIQAYNALGMTEAAQNL 333
           T++ A    G    A++L
Sbjct: 248 TILDALCKKGRLGDARDL 265


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 144/300 (48%), Gaps = 4/300 (1%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
            YT ++S  G    L  A   + +M+S    C  +V+TYS L+  C K +  DL   +  
Sbjct: 197 TYTTMISQCGTQQQLRRALELVAEMRSRGIQC--NVHTYSALMNVCIKGNELDLALDVYR 254

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M   G   + VTYNT+ID YGK   +EE      A+ E  G  P+I T N++I A   S
Sbjct: 255 QMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDAL-ERQGIDPEIRTYNTVIIACNMS 313

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G  ++  + Y      G +    T   L  +YG+ G  D+   +   M +R     V+TY
Sbjct: 314 GQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITY 373

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           + +I    KAG  E   E F++M   G +PN +TY SL++A ++     K   +  Q+++
Sbjct: 374 SSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQH 433

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
                D   F  +I+AY +AG   +    F  MK  +C PD++ + T++ A    G+  A
Sbjct: 434 RGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTGLVWA 493



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 143/299 (47%), Gaps = 8/299 (2%)

Query: 33  TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY------TYSILIKSCTKFHRFDLIEK 86
            AL+    +SG +  A    + ++ + D   D+Y      TY+ +I  C    +     +
Sbjct: 158 AALLKELNKSGHVRRAQELFDWLRGLDDSH-DLYPLCNTMTYTTMISQCGTQQQLRRALE 216

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           ++AEM   GI+C+  TY+ +++   K  + +     +  M+  G C P++ T N++I  Y
Sbjct: 217 LVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEG-CTPNLVTYNTLIDVY 275

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           G +G  E+  +  +     G+  +I+T N +  +   +G   +   + + M      PT 
Sbjct: 276 GKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTA 335

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TY  +I  +GK G +++  + F+ M  RG + N ITY SL+SA  KAG       + R+
Sbjct: 336 TTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALELFRE 395

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           +       +   +N +I+A  Q    EK  E+F  M+ R C PD +TF  +I AY+  G
Sbjct: 396 MHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAG 454



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 122/242 (50%), Gaps = 2/242 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++  ML++G  P++  Y  L+  YG++G  +EA   ++ ++      P++ TY+ +I +C
Sbjct: 252 VYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALER-QGIDPEIRTYNTVIIAC 310

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               +     +I   M   G + +A TY  +I  YGK  + +     F  MV   GC  +
Sbjct: 311 NMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRR-GCERN 369

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T +S+ISA   +G  E   + + E +  G + ++ T N L  +  +   ++K + + +
Sbjct: 370 VITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFE 429

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            MQ R   P  VT+  +I  + +AGH  +    F++MK    +P+S+ Y ++V A  K G
Sbjct: 430 QMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTG 489

Query: 256 LI 257
           L+
Sbjct: 490 LV 491



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 2/178 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q ++A  ++E ML+ G +P+   YTAL+SAYG++G LD A     DM     C+ +V TY
Sbjct: 315 QAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVR-RGCERNVITY 373

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S LI +C K  R++L  ++  EM   G   + VTYN++I    +  ++E+ +  F  M +
Sbjct: 374 SSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQM-Q 432

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
             GC PD  T   +I+AY  +G+  +    + +      + D    N +  +  + G+
Sbjct: 433 HRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTGL 490



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 90/210 (42%), Gaps = 6/210 (2%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL-NILTKSY--GRAGMYDKMR 191
           D   L +++     SG++ + ++ ++    +    D+  L N +T +    + G   ++R
Sbjct: 153 DSGALAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLR 212

Query: 192 SVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
             ++    M+ R     V TY+ ++    K   ++   + +++M   G  PN +TY +L+
Sbjct: 213 RALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLI 272

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             Y K G   +   +L  +E   +  +   +N +I A   +G  ++   ++  M      
Sbjct: 273 DVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQ 332

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMI 338
           P   T+  +I AY   G  + A  +   M+
Sbjct: 333 PTATTYTALISAYGKNGQLDRALQIFQDMV 362



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 6/176 (3%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQ----KRFFFP--TVVTYNIVIETFGKAGHIE 223
           D   L  L K   ++G   + + + D+++        +P    +TY  +I   G    + 
Sbjct: 153 DSGALAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLR 212

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
           +  E   +M+ RG++ N  TY +L++   K   +     + RQ+       +   +N +I
Sbjct: 213 RALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLI 272

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             YG+ G  E+   +   ++ +   P+  T+ T+I A N  G  + A  +  +M+A
Sbjct: 273 DVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLA 328


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 168/339 (49%), Gaps = 3/339 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+    E+ S +FE M + G+  SV  YTAL+++YG++G  + +   +  MK      
Sbjct: 152 LLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKK-ERVS 210

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY+ +I SC +    ++ +  + AEM + GI+   VTYNT++         +E E 
Sbjct: 211 PSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEM 270

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M E GG  PDI T   ++  +G    ++K+ +   E    G   +I + N+L ++Y
Sbjct: 271 VFRTMNE-GGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAY 329

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R G  +    V   MQ+    P   TY+I++  +GK G  +++ E F +MK    +P++
Sbjct: 330 ARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDA 389

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY +L+  + + G   +V ++   +   +V  +   +  +I A G+ G  +   ++ L 
Sbjct: 390 ATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLH 449

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           M E+  +P +  +  +I+AY    M E A    N M  M
Sbjct: 450 MSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEM 488



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 158/320 (49%), Gaps = 2/320 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A ++F  M   G+ P +  YT LV  +G+   LD+    + +M S  +  P++ +Y++
Sbjct: 266 DEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNV-PEISSYNV 324

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++  +    +    +   M   G   +A TY+ ++  YGK  +++E+   F  M  S 
Sbjct: 325 LLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSN 384

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T N++I  +G  G  +++   +++     V+ +++T   L  + G+ G++D  
Sbjct: 385 -TEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDA 443

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + ++  M ++   P+   Y  VIE +G+A   E+       M   G KP   TY +L+  
Sbjct: 444 KKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYM 503

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           +++ GL  + ++IL ++ +  V  +   FN +I  + Q G  E+  + ++ M++   VPD
Sbjct: 504 FARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPD 563

Query: 311 NITFATMIQAYNALGMTEAA 330
             T   ++  Y   G+ + +
Sbjct: 564 ERTLEAVLSVYCIAGLVDES 583



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 153/309 (49%), Gaps = 3/309 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+  +YT ++S  G+ GLL++      +M         V++Y+ LI S  +  ++++  
Sbjct: 140 KPNEHIYTIMISLLGREGLLEKCSDIFEEM-GAHGVSRSVFSYTALINSYGRNGKYEVSL 198

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           ++L  M    +  S +TYNT+I+   +    +E +   F+ M    G  PDI T N+++ 
Sbjct: 199 ELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHE-GIQPDIVTYNTLLC 257

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A  N G  ++ E  +   N  GV  DI T   L  ++G+    DK+  ++  M      P
Sbjct: 258 ACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVP 317

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            + +YN+++E + + G+IE     F+ M+  G  PN+ TY  L+  Y K G   +V  + 
Sbjct: 318 EISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELF 377

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            +++ S+   D   +N +I  +G+ G  +++  LF  M E +  P+  T+  +I A    
Sbjct: 378 LEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKG 437

Query: 325 GMTEAAQNL 333
           G+ + A+ +
Sbjct: 438 GLHDDAKKI 446



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 162/346 (46%), Gaps = 2/346 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK  + ++ S L + M S G  P +  Y  L+ AY + G +++A      M+  + C P
Sbjct: 294 FGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQE-AGCVP 352

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TYSIL+    K  R+D + ++  EM     E  A TYNT+ID +G+   F+E+ + F
Sbjct: 353 NAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLF 412

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E     P++ T   +I A G  G  +  +K     +  G+    +    + ++YG+
Sbjct: 413 HDMAEEN-VEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQ 471

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A MY++    ++ M +    PT+ TYN +I  F + G  ++ E    KM   G+     +
Sbjct: 472 AAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVARERDS 531

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           +  ++  + + G   +      ++E S ++ D      ++S Y  AG V++  E F  +K
Sbjct: 532 FNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIK 591

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
               +P+ + +  M+  Y        A  L ++M+  + ++  ++I
Sbjct: 592 ASGILPNVMCYCMMLAVYAKSDRWNEAYELLDEMLTNRASNIHQVI 637



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 143/304 (47%), Gaps = 8/304 (2%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           K S++ +  +   + Q G    +      M+    CKP+ + Y+I+I   +   R  L+E
Sbjct: 104 KLSLNDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMI---SLLGREGLLE 160

Query: 86  K---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
           K   I  EM   G+  S  +Y  +I+ YG+  K+E        M +     P I T N++
Sbjct: 161 KCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKE-RVSPSILTYNTV 219

Query: 143 ISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           I++    G + E +   + E    G++ DI T N L  +    G+ D+   V   M +  
Sbjct: 220 INSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGG 279

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P + TY  +++TFGK   ++K+ E  K+M   G  P   +Y  L+ AY++ G I    
Sbjct: 280 VVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDAT 339

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            + R ++ +  + +   ++ ++  YG+ G  +++ ELFL MK  +  PD  T+ T+I  +
Sbjct: 340 GVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVF 399

Query: 322 NALG 325
              G
Sbjct: 400 GEGG 403



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 1/209 (0%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M     C P+      MIS  G  G +EK    + E    GV   + +   L  SYG
Sbjct: 130 FKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYG 189

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNS 241
           R G Y+    +++ M+K    P+++TYN VI +  + G   E +   F +M+H G++P+ 
Sbjct: 190 RNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDI 249

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L+ A S  GL  + + + R +    V+ D   +  ++  +G+   ++K+ EL   
Sbjct: 250 VTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKE 309

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAA 330
           M     VP+  ++  +++AY  +G  E A
Sbjct: 310 MASTGNVPEISSYNVLLEAYARIGNIEDA 338



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
           +AK  E +  + S +VE G    D+ TL + +S+    G+I +        ++   K  +
Sbjct: 54  RAKPKELVLGNPSVVVEKGKYSYDVETLINKLSSLPPRGSIARC------LDVFKNKLSL 107

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFK 230
               ++ K + + G + +   +   MQ++ +  P    Y I+I   G+ G +EK  + F+
Sbjct: 108 NDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFE 167

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           +M   G+  +  +Y +L+++Y + G       +L +++   V      +N +I++  + G
Sbjct: 168 EMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGG 227

Query: 291 -DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
            D E +  LF  M+     PD +T+ T++ A +  G+ + A+
Sbjct: 228 LDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAE 269


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 154/298 (51%), Gaps = 2/298 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  Q   A  LF  M S   KP++  YTALV+A+ + GL ++A      ++     +PD
Sbjct: 264 GKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGH-EPD 322

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VY Y+ L+++ ++        +I + M ++G E    +YN ++D YG+    E+ ++ F 
Sbjct: 323 VYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFE 382

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +  G  P + +   ++SAY  +G++ K E   NE +  G++ D   LN +   YGR 
Sbjct: 383 EM-KRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRL 441

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G + KM  V+  M+   +   + TYNI+I  +G+AG  EKME  F+ +  + +KP+ +T+
Sbjct: 442 GQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTW 501

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            S + AYS+  L  K   I  ++ ++    D      ++S+      +E++  +  TM
Sbjct: 502 TSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTVIRTM 559



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 159/312 (50%), Gaps = 2/312 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +F  M   GL PS  VY A +    ++G    A      MK    C+P   TY++
Sbjct: 200 EKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKR-DCCQPSTETYTL 258

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  +  +  K+  EM     + +  TY  +++ + +    E+ E  F  + E G
Sbjct: 259 LINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDG 318

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD++  N+++ AY  +G      + ++    MG + D  + NI+  +YGR G+++  
Sbjct: 319 H-EPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDA 377

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           ++V + M++    PT+ ++ +++  + KAG + K E+   ++   G++P++    S+++ 
Sbjct: 378 QAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNL 437

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y + G   K++ +L  +E+     D   +N +I+ YG+AG  EKM  LF ++  ++  PD
Sbjct: 438 YGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPD 497

Query: 311 NITFATMIQAYN 322
            +T+ + + AY+
Sbjct: 498 VVTWTSRLGAYS 509



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 146/313 (46%), Gaps = 2/313 (0%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P+ D Y  L+ AY  SGLL++A +   +M+      P    Y+  I    K        +
Sbjct: 181 PTEDTYALLLKAYCTSGLLEKAEAIFAEMRKYG-LPPSAIVYNAYIDGLMKAGNPQRAVE 239

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           I   M     + S  TY  +I+ +GKA +       F+ M  S  C P+I T  ++++A+
Sbjct: 240 IFQRMKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEM-RSQKCKPNICTYTALVNAF 298

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G  EK E+ + +    G + D+   N L ++Y RAG       +   MQ     P  
Sbjct: 299 AREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDR 358

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            +YNI+++ +G+ G  E  +  F++MK  G+ P   ++  L+SAYSKAG + K + I+ +
Sbjct: 359 ASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNE 418

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +  S +  DT   N +++ YG+ G   KM E+   M+      D  T+  +I  Y   G 
Sbjct: 419 LHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGF 478

Query: 327 TEAAQNLENKMIA 339
            E  + L   + A
Sbjct: 479 FEKMEGLFQSLAA 491



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 131/268 (48%), Gaps = 9/268 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL---LDEAFSTINDMKSVSDCKPDVYT 67
           E+A  +FE +  DG +P V  Y AL+ AY ++G      E FS +  M     C+PD  +
Sbjct: 305 EKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHM----GCEPDRAS 360

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+I++ +  +    +  + +  EM  LGI  +  ++  ++  Y KA    + E   + + 
Sbjct: 361 YNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELH 420

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           ESG   PD F LNSM++ YG  G   KME+            DI T NIL   YGRAG +
Sbjct: 421 ESG-LEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAGFF 479

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           +KM  +   +  +   P VVT+   +  + +     K  E F++M   G  P+  T   L
Sbjct: 480 EKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVL 539

Query: 248 VSAYSKAGLIMKVDSILRQV-ENSDVIL 274
           +S+ S    I +V +++R + +N + +L
Sbjct: 540 LSSCSSEDQIEQVTTVIRTMHKNMETVL 567



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 123/259 (47%), Gaps = 2/259 (0%)

Query: 80  RFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
           ++DLI  I   + Y    +   + +N +ID YG+   ++  E+++  ++E+  C P   T
Sbjct: 127 KWDLILLICQWILYRSSFQSDVMIFNLVIDAYGRKSLYKMAETTYFELIEAR-CIPTEDT 185

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
              ++ AY  SG +EK E  + E    G+       N       +AG   +   +   M+
Sbjct: 186 YALLLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMK 245

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +    P+  TY ++I   GKA       + F +M+ +  KPN  TY +LV+A+++ GL  
Sbjct: 246 RDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCE 305

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           K + I  Q++      D   +N ++ AY +AG      E+F  M+   C PD  ++  M+
Sbjct: 306 KAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMV 365

Query: 319 QAYNALGMTEAAQNLENKM 337
            AY   G+ E AQ +  +M
Sbjct: 366 DAYGRGGLHEDAQAVFEEM 384



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 4/142 (2%)

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEE--YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           F   V+ +N+VI+ +G+   + KM E  YF+ ++ R + P   TY  L+ AY  +GL+ K
Sbjct: 144 FQSDVMIFNLVIDAYGRKS-LYKMAETTYFELIEARCI-PTEDTYALLLKAYCTSGLLEK 201

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
            ++I  ++    +      +N  I    +AG+ ++  E+F  MK   C P   T+  +I 
Sbjct: 202 AEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLIN 261

Query: 320 AYNALGMTEAAQNLENKMIAMK 341
            +     +  A  L N+M + K
Sbjct: 262 LHGKASQSYMALKLFNEMRSQK 283


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 155/329 (47%), Gaps = 5/329 (1%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           ++ E A  L E M+ +G KP +  Y AL+    +   + EA      +      +P+V T
Sbjct: 237 RRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLR-QGYEPEVPT 295

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ILI    K  R +   ++ + +   G+E  A+TY   IDG  KA + E+       M 
Sbjct: 296 YNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMD 355

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E G C PD+ + N++I+       +++ E   +     G   +  + N L     RAG +
Sbjct: 356 EKG-CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKW 414

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA---GHIEKMEEYFKKMKHRGMKPNSITY 244
            K  +    M KR   PTVVTYNI+++   KA   G I++    F  M  +G  P+ +TY
Sbjct: 415 KKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTY 474

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+    KAG +     +L  +E    I +   +N +IS       V++  ELF+ M E
Sbjct: 475 SALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVE 534

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNL 333
           + CVPD IT+ T+I A     M + A  L
Sbjct: 535 KGCVPDTITYGTIISALCKQEMVDKALAL 563



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 147/325 (45%), Gaps = 5/325 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  +L  G +P V  Y  L+    +   ++EAF   + +      +PD  TY++ 
Sbjct: 276 EALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVK-HGLEPDAITYTVF 334

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K  R +    +L +M   G     V++N +I+G  K K+ +E E   S M E+ G
Sbjct: 335 IDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGM-EAKG 393

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  + N++I     +G  +K    + E    GVK  + T NIL     +A    +++
Sbjct: 394 CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIK 453

Query: 192 ---SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
              ++ D M ++   P VVTY+ +I+  GKAG ++        M+ +G  PN  TY SL+
Sbjct: 454 EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLI 513

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           S       + +   +   +     + DT  +  IISA  +   V+K   LF    E   V
Sbjct: 514 SGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVV 573

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
           P +  + ++I    A+   + A  L
Sbjct: 574 PTSGMYFSLIDGLCAVARVDEALKL 598



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 139/307 (45%), Gaps = 6/307 (1%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  L+E M+  G  P V  Y  L+  + + G LDEA   I D        PDV TY+ LI
Sbjct: 104 AQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALK-IFDGAVKRGFVPDVVTYNALI 162

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K  + D  ++IL  M    +    VTYN++++G  K  + +E       ++   G 
Sbjct: 163 NGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEAR----MLIVDKGF 218

Query: 133 HPDIFTLNSMISAYGNS-GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
            P++ T +++IS        +E   +   +  L G K DI + N L     R     +  
Sbjct: 219 SPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEAL 278

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +   + ++ + P V TYNI+I+   K   + +  E F  +   G++P++ITY   +   
Sbjct: 279 KLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGL 338

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            KAG +     +L+ ++    + D    N +I+   +   V++   L   M+ + C P+ 
Sbjct: 339 CKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNA 398

Query: 312 ITFATMI 318
           I+F T+I
Sbjct: 399 ISFNTLI 405



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 157/338 (46%), Gaps = 9/338 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + ++A  + + M+S+ L P V  Y +LV+   ++G +DEA   I D K  S   P+V
Sbjct: 167 KADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVD-KGFS---PNV 222

Query: 66  YTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            TYS LI   C +  R +   ++L +M   G +   V+YN +I G  + +   E    F 
Sbjct: 223 ITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFG 282

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           +++  G   P++ T N +I        + +  + ++     G++ D  T  +      +A
Sbjct: 283 SVLRQG-YEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKA 341

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  +    ++  M ++   P VV++N VI    K   +++ E     M+ +G  PN+I++
Sbjct: 342 GRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISF 401

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA---GDVEKMGELFLT 301
            +L+    +AG   K  +  +++    V      +N ++    +A   G +++   LF  
Sbjct: 402 NTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDA 461

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M E+  VPD +T++ +I      G  + A+ L   M A
Sbjct: 462 MIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEA 499



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 147/330 (44%), Gaps = 13/330 (3%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + ++A  +F+  +  G  P V  Y AL++ + ++  LDEA   +  M S S   
Sbjct: 129 GFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSES-LV 187

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA-KKFEEMES 121
           PDV TY+ L+    K  R D    ++ +    G   + +TY+T+I G  +  ++ E    
Sbjct: 188 PDVVTYNSLVNGLCKNGRVDEARMLIVDK---GFSPNVITYSTLISGLCRELRRLESARQ 244

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               MV +G C PDI + N++I        + +  K +      G + ++ T NIL    
Sbjct: 245 LLEKMVLNG-CKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGL 303

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            +    ++   +   + K    P  +TY + I+   KAG +E      K M  +G  P+ 
Sbjct: 304 LKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDV 363

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +++ ++++   K   + + + +L  +E      +   FN +I    +AG  +K    F  
Sbjct: 364 VSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKE 423

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           M +R   P  +T+  ++      G+ +A Q
Sbjct: 424 MLKRGVKPTVVTYNILVD-----GLCKARQ 448



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 122/269 (45%), Gaps = 7/269 (2%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YT  IL++S  K  + +   + + ++   G+ C   T+N  I G  +A +  + ++ 
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGL-CDISTFNIYISGLCRASRIGDAQTV 72

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M    G  P+  T N+++S   N G +   +  Y      G   D+ T N L   + 
Sbjct: 73  FDGM-RKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC 131

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D+   + D   KR F P VVTYN +I  F KA  +++ +   ++M    + P+ +
Sbjct: 132 KVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVV 191

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY-GQAGDVEKMGELFLT 301
           TY SLV+   K G   +VD     + +     +   ++ +IS    +   +E   +L   
Sbjct: 192 TYNSLVNGLCKNG---RVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEK 248

Query: 302 MKERHCVPDNITFATMIQAY-NALGMTEA 329
           M    C PD +++  +I       G++EA
Sbjct: 249 MVLNGCKPDIVSYNALIHGLAREQGVSEA 277



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 93/200 (46%), Gaps = 1/200 (0%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           PD +T+  ++ +   SG IEK  ++  +  + G+  DI T NI      RA      ++V
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGL-CDISTFNIYISGLCRASRIGDAQTV 72

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
            D M+K  F+P  +TYN ++      G +   +  +++M   G  P+ +TY +L+  + K
Sbjct: 73  FDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCK 132

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
            G + +   I         + D   +N +I+ + +A  +++   +   M     VPD +T
Sbjct: 133 VGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVT 192

Query: 314 FATMIQAYNALGMTEAAQNL 333
           + +++      G  + A+ L
Sbjct: 193 YNSLVNGLCKNGRVDEARML 212



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 117/291 (40%), Gaps = 43/291 (14%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  ++  GL+P    YT  +    ++G +++A   + DM     C PDV +++ +I   
Sbjct: 315 LFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDE-KGCVPDVVSHNAVINGL 373

Query: 76  TKFHRFDLIEKILA-----------------------------------EMSYLGIECSA 100
            K  R D  E +L+                                   EM   G++ + 
Sbjct: 374 CKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTV 433

Query: 101 VTYNTIIDGYGKAK---KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 157
           VTYN ++DG  KA+   + +E  + F AM+E G   PD+ T +++I   G +G ++   +
Sbjct: 434 VTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV-PDVVTYSALIDGLGKAGKLDDARR 492

Query: 158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
                   G   ++ T N L          D+   +   M ++   P  +TY  +I    
Sbjct: 493 LLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALC 552

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           K   ++K    F      G+ P S  Y SL+        + +VD  L+ ++
Sbjct: 553 KQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCA---VARVDEALKLLQ 600



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 3/171 (1%)

Query: 170 DIQTLNILTKSYGRAGMYDKM-RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
           D  T+ IL +S  ++G  +K  R V   + K      + T+NI I    +A  I   +  
Sbjct: 15  DAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC--DISTFNIYISGLCRASRIGDAQTV 72

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F  M+  G  PN ITY +L+S     G +    ++  ++  +    D   +N ++  + +
Sbjct: 73  FDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCK 132

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            G +++  ++F    +R  VPD +T+  +I  +      + AQ +  +M++
Sbjct: 133 VGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS 183



 Score = 37.7 bits (86), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 1/115 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + + A  L   M + G  P+V  Y +L+S       +DEA      M     C P
Sbjct: 481 LGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVE-KGCVP 539

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           D  TY  +I +  K    D    +       G+  ++  Y ++IDG     + +E
Sbjct: 540 DTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDE 594


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 174/345 (50%), Gaps = 4/345 (1%)

Query: 1   MVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  +   A  + + +++ GL P+  +Y  L++ Y Q+G L+ AFST   MKS 
Sbjct: 345 ILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS- 403

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              KPD  TY+ LI    K  R    + +L EM   G+  +  T+NT+ID YG+  + E+
Sbjct: 404 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 463

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                S M E+G   P++ +  S+++A+  +G I +     ++     V  + Q  N + 
Sbjct: 464 CFIVLSEMQENG-LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAII 522

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y   G  D+   +++ M+     P++VTYN++I+       I + EE    + +  + 
Sbjct: 523 DAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLI 582

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++++Y +L+SA    G I K   + +++    +      ++ +IS  G AG + +M  L
Sbjct: 583 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYL 642

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           +  M + + VP N     M++AY+  G    A++L  +M+  + N
Sbjct: 643 YQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 687



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 145/305 (47%), Gaps = 2/305 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M+  GLKP+   Y  L+S   ++G + E  + +++M S     PD +TYSIL    
Sbjct: 257 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS-QKMVPDGFTYSILFDGL 315

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           ++      +  +  +    G+     T + +++G  K  K    E    ++V +G   P 
Sbjct: 316 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG-LVPT 374

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
               N++I+ Y  +G +E     + +     +K D  T N L     +A      + ++ 
Sbjct: 375 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLM 434

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            MQ     PTV T+N +I+ +G+ G +EK      +M+  G+KPN ++Y S+V+A+ K G
Sbjct: 435 EMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNG 494

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I +  +IL  + + DV+ +   +N II AY + G  ++   L   MK     P  +T+ 
Sbjct: 495 KIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 554

Query: 316 TMIQA 320
            +I+ 
Sbjct: 555 LLIKG 559



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 142/339 (41%), Gaps = 34/339 (10%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F ++ S G +P    +   V A   +G L EA   +  M       P+ ++Y+++I    
Sbjct: 152 FGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMW 211

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV--------- 127
           +  R     ++  EM+   +  + +TYNT+IDG+ K    E        MV         
Sbjct: 212 RAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAI 271

Query: 128 -----ESGGCH--------------------PDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
                 SG C                     PD FT + +      +G+ + M   + ++
Sbjct: 272 TYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKY 331

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              GV     T +IL     + G       V+  +      PT V YN +I  + + G +
Sbjct: 332 LKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGEL 391

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           E     F +MK R +KP+ ITY +L++   KA  I     +L +++++ V      FN +
Sbjct: 392 EGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTL 451

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           I AYG+ G +EK   +   M+E    P+ +++ +++ A+
Sbjct: 452 IDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 490



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 129/283 (45%), Gaps = 5/283 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNTIIDGYGKAKKFEEME 120
           +PD + ++  +++C           +L  M   G    +A +YN +I G  +A +  +  
Sbjct: 161 RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 220

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M E     P+  T N+MI  +   G++E   +  ++    G+K +  T N+L   
Sbjct: 221 EVFDEMTERA-VLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSG 279

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             RAG   +  +++D M  +   P   TY+I+ +   + G  + M   F K    G+   
Sbjct: 280 LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIG 339

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             T   L++   K G +   + +L+ + N+ ++     +N +I+ Y Q G++E     F 
Sbjct: 340 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFG 399

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
            MK RH  PD+IT+  +I   N L   E   N ++ ++ M++N
Sbjct: 400 QMKSRHIKPDHITYNALI---NGLCKAERITNAQDLLMEMQDN 439


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 154/335 (45%), Gaps = 3/335 (0%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    E A   F+ ML  G KP V  Y  L+S + ++G  D A  ++    +++ C 
Sbjct: 205 GLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCT 264

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D++TY+ ++    K  + +    ++ +++  G   +  TYN +++G  K  + EE    
Sbjct: 265 IDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDL 324

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              +V++G C PD+ T  S+I   G      +  K + E  L G+  D      L +   
Sbjct: 325 LRKIVDNG-CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELL 383

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   +  SV   M      P VVT + +I+   KAG I      FK M+ RG+ PN +
Sbjct: 384 QTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEV 443

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y +L+    KA  +     +L Q++ +    DT  +N +I    ++GDVE     F  M
Sbjct: 444 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 503

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            E  C PD  T+  +I  +   G T+AA  + + M
Sbjct: 504 LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 538



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 149/329 (45%), Gaps = 3/329 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QAS +++ M S G  P V   + ++    ++G +  A      M++     P+   YS L
Sbjct: 109 QASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEA-RGLAPNEVVYSAL 167

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K  + D   ++LA+M         +TYN +IDG  K+   E   + F  M+E+G 
Sbjct: 168 IHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAG- 226

Query: 132 CHPDIFTLNSMISAYGNSGNIEKM-EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           C PD++T N +IS +  +GN +        E  + G   DI T   +     +    ++ 
Sbjct: 227 CKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEA 286

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            ++M+ +      PT+ TYN ++    K G +E+  +  +K+   G  P+ +TY SL+  
Sbjct: 287 VALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG 346

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K     +   + +++    + LDT  +  +I    Q G + +   ++ TM    CVPD
Sbjct: 347 LGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPD 406

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
            +T +TMI   +  G   AA  +   M A
Sbjct: 407 VVTLSTMIDGLSKAGRIGAAVRIFKSMEA 435



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 150/331 (45%), Gaps = 7/331 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--CKPDVYTY 68
           E+A  L E + ++G  P++  Y AL++   + G L+EA   I+ ++ + D  C PDV TY
Sbjct: 3   EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA---IDLLRKIVDNGCTPDVVTY 59

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + LI    K  R     K+  EM+  G+    V Y  +I    +  K  +  S +  M  
Sbjct: 60  TSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMT- 118

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           S GC PD+ TL++MI     +G I    + +      G+  +    + L     +A   D
Sbjct: 119 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 178

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
               ++  M+K F  P  +TYN++I+   K+G +E    +F +M   G KP+  TY  L+
Sbjct: 179 CALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 238

Query: 249 SAYSKAGLIMKVD-SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           S + KAG       S+ ++   +   +D   +  I+    +   +E+   L   +    C
Sbjct: 239 SGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGC 298

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            P   T+  ++     +G  E A +L  K++
Sbjct: 299 TPTIATYNALLNGLCKMGRLEEAIDLLRKIV 329



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 140/304 (46%), Gaps = 6/304 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--C 61
           L K K+ E+A  L E + ++G  P++  Y AL++   + G L+EA   I+ ++ + D  C
Sbjct: 277 LAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA---IDLLRKIVDNGC 333

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PDV TY+ LI    K  R     K+  EM+  G+    V Y  +I    +  K  +  S
Sbjct: 334 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASS 393

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +  M  S GC PD+ TL++MI     +G I    + +      G+  +    + L    
Sbjct: 394 VYKTMT-SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 452

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            +A   D    ++  M+K F  P  +TYNI+I+   K+G +E    +F +M   G KP+ 
Sbjct: 453 CKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDV 512

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY  L+S + KAG       +   + +S    +   +  +IS   +   + K    F  
Sbjct: 513 YTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQH 572

Query: 302 MKER 305
           MKER
Sbjct: 573 MKER 576



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 106/233 (45%), Gaps = 2/233 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK K+  +A  LF+ M   GL      YTAL+    Q+G + +A S    M S   C P
Sbjct: 347 LGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTS-HGCVP 405

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T S +I   +K  R     +I   M   G+  + V Y+ +I G  KA+K +      
Sbjct: 406 DVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEML 465

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M +   C PD  T N +I     SG++E    +++E    G K D+ T NIL   + +
Sbjct: 466 AQM-KKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCK 524

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           AG  D    V D M        VVTY  +I    K   + K   YF+ MK RG
Sbjct: 525 AGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%)

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT+ TYN ++    K G +E+  +  +K+   G  P+ +TY SL+    K     +   +
Sbjct: 19  PTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKL 78

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
            +++    + LDT  +  +I    Q G + +   ++ TM    CVPD +T +TMI   + 
Sbjct: 79  FKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 138

Query: 324 LGMTEAAQNLENKMIA 339
            G   AA  +   M A
Sbjct: 139 AGRIGAAVRIFKSMEA 154



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 6/171 (3%)

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVT 208
           IE+      +    G    I T N L     + G   ++   +D ++K       P VVT
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMG---RLEEAIDLLRKIVDNGCTPDVVT 58

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y  +I+  GK     +  + FK+M  RG+  +++ Y +L+    + G I +  S+ + + 
Sbjct: 59  YTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMT 118

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           +   + D    + +I    +AG +     +F +M+ R   P+ + ++ +I 
Sbjct: 119 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIH 169


>gi|168039319|ref|XP_001772145.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676476|gb|EDQ62958.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 313

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 142/260 (54%), Gaps = 1/260 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  QP+ A+ LF+ M   G+K +   Y AL+ +YG++    +A      MK   DC+P 
Sbjct: 27  GRINQPQLAADLFDEMEKRGIKKTAVSYNALIHSYGRNNEPQKALQLFEYMKVTVDCQPT 86

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY+ LI   ++    + ++KI  + +         TYN +I GY +A +  EME +F+
Sbjct: 87  LVTYNTLISMYSRMGATEEMKKIFLDCTEAEFVPDRHTYNALIWGYMRAGQLNEMEVTFN 146

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + ++   + D+ T N++I  Y  +  ++KME   +    +G+  +   L+ L  +Y RA
Sbjct: 147 EL-QAKKFNADVITYNALIIGYARANAVDKMEVVLSSMQAVGIPINTMALHALIMAYSRA 205

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G YD++   M+ ++   +     TYNI+I  +GK G+++KME+ F++M +  +KP+  T+
Sbjct: 206 GTYDRLAKTMEVVKDAGWMLQPATYNILISEYGKVGYLDKMEQAFREMMNASVKPSFETF 265

Query: 245 CSLVSAYSKAGLIMKVDSIL 264
             +++AY  A    +VD IL
Sbjct: 266 QYMINAYEAADNETQVDRIL 285



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 129/256 (50%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ +I    + ++  L   +  EM   GI+ +AV+YN +I  YG+  + ++    F  M 
Sbjct: 19  YAKMISFAGRINQPQLAADLFDEMEKRGIKKTAVSYNALIHSYGRNNEPQKALQLFEYMK 78

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            +  C P + T N++IS Y   G  E+M+K + +        D  T N L   Y RAG  
Sbjct: 79  VTVDCQPTLVTYNTLISMYSRMGATEEMKKIFLDCTEAEFVPDRHTYNALIWGYMRAGQL 138

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           ++M    + +Q + F   V+TYN +I  + +A  ++KME     M+  G+  N++   +L
Sbjct: 139 NEMEVTFNELQAKKFNADVITYNALIIGYARANAVDKMEVVLSSMQAVGIPINTMALHAL 198

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           + AYS+AG   ++   +  V+++  +L    +N +IS YG+ G ++KM + F  M     
Sbjct: 199 IMAYSRAGTYDRLAKTMEVVKDAGWMLQPATYNILISEYGKVGYLDKMEQAFREMMNASV 258

Query: 308 VPDNITFATMIQAYNA 323
            P   TF  MI AY A
Sbjct: 259 KPSFETFQYMINAYEA 274



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 7/140 (5%)

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y  +I   G+    +   + F +M+ RG+K  +++Y +L+ +Y +     K    L+  E
Sbjct: 19  YAKMISFAGRINQPQLAADLFDEMEKRGIKKTAVSYNALIHSYGRNNEPQKA---LQLFE 75

Query: 269 NSDVILD-TPF---FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
              V +D  P    +N +IS Y + G  E+M ++FL   E   VPD  T+  +I  Y   
Sbjct: 76  YMKVTVDCQPTLVTYNTLISMYSRMGATEEMKKIFLDCTEAEFVPDRHTYNALIWGYMRA 135

Query: 325 GMTEAAQNLENKMIAMKENS 344
           G     +   N++ A K N+
Sbjct: 136 GQLNEMEVTFNELQAKKFNA 155


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 169/334 (50%), Gaps = 23/334 (6%)

Query: 24  GLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSD-----CKPDVYTYSILIKSCTK 77
           GLKP++  Y A++ A G+ G+  + A    ++M   S+      + D++TY+ L+ +  K
Sbjct: 165 GLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCK 224

Query: 78  FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
             + DL  +I++EM    I  + VTY+T+IDGY KA + +E  + F+ M +      D  
Sbjct: 225 GGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEM-KFASIGLDRV 283

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           + N+++S Y   G  E+      E    G+K D  T N L   YG+ G Y++++ V + M
Sbjct: 284 SYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEM 343

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +    FP ++TY+ +I+ + K G  ++  E F++ K  G+K + + Y +L+ A  K GL+
Sbjct: 344 KAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLV 403

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
               S L ++    +  +   +N II A+G++G VE   E  +  KE     DN     +
Sbjct: 404 ESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKE-----DN----QI 454

Query: 318 IQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
           I+ +  L         E    A KEN G++ I C
Sbjct: 455 IKIFGQLAA-------EKTCHAKKENRGRQEILC 481



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 116/219 (52%), Gaps = 5/219 (2%)

Query: 12  QASLLFEVMLSDGLK---PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q  L F++M     K   P+V  Y+ ++  Y ++G LDEA +  N+MK  S    D  +Y
Sbjct: 227 QMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFAS-IGLDRVSY 285

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + L+    K  RF+    +  EM   GI+  AVTYN ++ GYGK  K+EE++  F  M +
Sbjct: 286 NTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEM-K 344

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           +    P++ T +++I  Y   G  ++  + + EF   G+KAD+   + L  +  + G+ +
Sbjct: 345 AERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVE 404

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
              S +D M K    P VVTYN +I+ FG++G +E   E
Sbjct: 405 SAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATE 443



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 125/307 (40%), Gaps = 20/307 (6%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  + + M S G+K     Y AL+  YG+ G  +E      +MK+     P++ TYS 
Sbjct: 299 EEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKA-ERIFPNLLTYST 357

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI   +K   +    ++  E    G++   V Y+ +ID   K    E   S    M +  
Sbjct: 358 LIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKE- 416

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK- 189
           G  P++ T NS+I A+G SG +E   +     + +G K D Q + I  +       + K 
Sbjct: 417 GIRPNVVTYNSIIDAFGRSGIVEDATE-----SEVGDKEDNQIIKIFGQLAAEKTCHAKK 471

Query: 190 ----------MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                     + +V   M +    P VVT++ ++    +    E      ++++    + 
Sbjct: 472 ENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQV 531

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
             + +  L+  Y    + ++  S+  +V+  D    + F+N +       G       + 
Sbjct: 532 YGVAH-GLLMGYGD-NVWVQAQSLFDEVKQMDSSTASAFYNALTDMLWHFGQRRGAQLVV 589

Query: 300 LTMKERH 306
           L  K RH
Sbjct: 590 LEGKRRH 596


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 159/328 (48%), Gaps = 4/328 (1%)

Query: 5   GKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+  P+QA  L + M   GL P+V VY+ L+  + + G  DEAF  + +M S +  +
Sbjct: 322 GLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEM-SAAGVQ 380

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+  TY  LI+   K  R     +IL +M+ +G     +TYN +I+G+ +    EE    
Sbjct: 381 PNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLL 440

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M   GG  P+++T + +I+     G  E+      +    G+K +      L   Y 
Sbjct: 441 LNEM-RKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYC 499

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G +      +  M +    P +  YN +I      G +++  EY+ +M  +G +PN  
Sbjct: 500 REGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDF 559

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+  YS AG + K + +L Q+ NS +  +   +  I+  Y ++ ++EK+     +M
Sbjct: 560 TYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSM 619

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
            E+  +PDN  +  +I   ++ G  +AA
Sbjct: 620 LEKGLMPDNRLYGIVIHNLSSSGHMQAA 647



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 158/340 (46%), Gaps = 6/340 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K +  E A  + E M   G   +V  Y  L+    ++G ++EAF    +M+      PD 
Sbjct: 255 KVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYG-LVPDG 313

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           +TY  +I    K  R D  + +L EMS  G+  + V Y+T+IDG+ +    +E       
Sbjct: 314 FTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKE 373

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M  + G  P+  T +++I      G + +  +   +   +G  AD  T N++ + + R  
Sbjct: 374 M-SAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQH 432

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             ++   +++ M+K    P V TY+I+I    + G  E+     ++M   G+KPN+  Y 
Sbjct: 433 NKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYA 492

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+S Y + G        L+++   ++  D   +N +I      G +++  E +  M E+
Sbjct: 493 PLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEK 552

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
              P++ T+  +I  Y+  G  E A+ L ++M+    NSG
Sbjct: 553 GFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQML----NSG 588



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 153/341 (44%), Gaps = 4/341 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G C+  + E+AS L E M++DGLKP+  VY  L+S Y + G    A  T+  M + 
Sbjct: 458 IIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKM-TR 516

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            +  PD+Y Y+ LI   +   + D   +   EM   G + +  TY  +I GY  A   E+
Sbjct: 517 ENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEK 576

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E     M+ SG  +P+ F    ++  Y  S N+EK+          G+  D +   I+ 
Sbjct: 577 AEQLLHQMLNSG-LNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVI 635

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +   +G      SV+  ++K    P  + Y  +I  F KA  +EK      +M  +G++
Sbjct: 636 HNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIE 695

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P    Y +L+  + K+  I    +I   +    +  +   +  +I  Y +AGD+    +L
Sbjct: 696 PGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDL 755

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +  M      PD   ++ +    +  G  + A  +  +MIA
Sbjct: 756 YNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIA 796



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 159/341 (46%), Gaps = 6/341 (1%)

Query: 1   MVMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G  +Q   E+A LL   M   G+ P+V  Y+ +++   Q G  + A   +  M  +
Sbjct: 423 LVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQM--I 480

Query: 59  SD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           +D  KP+ + Y+ LI    +   F L  + L +M+   +      YN++I G     K +
Sbjct: 481 ADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMD 540

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E    +  M+E G   P+ FT   +I  Y  +GN+EK E+  ++    G+  +      +
Sbjct: 541 EAIEYYDEMLEKG-FQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQI 599

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            + Y ++   +K+ S +  M ++   P    Y IVI     +GH++        ++  G+
Sbjct: 600 LEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGL 659

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P+S+ Y SL+S + KA  + K   +L ++    +      +N +I  + ++ D+     
Sbjct: 660 VPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARN 719

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +F ++  +   P+ +T+ T+I  Y   G    A +L N+M+
Sbjct: 720 IFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEML 760



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 151/323 (46%), Gaps = 6/323 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G +P V     LV  Y ++G + +    +  MK +    P +   + L+K   +    DL
Sbjct: 170 GRRPVV--LDVLVDTYKKTGRVRDGAEVVLLMKDLG-LAPSLRCCNGLLKDLLRADALDL 226

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + K+   M   GI     TY+T+I+ Y K +  E  +     M E+G C  ++ T N++I
Sbjct: 227 LWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETG-CSLNVVTYNTLI 285

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                +G IE+   +  E    G+  D  T   +     + G  D+ + ++D M      
Sbjct: 286 GGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLM 345

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VV Y+ +I+ F + G+ ++  +  K+M   G++PN ITY +L+    K G + +   I
Sbjct: 346 PNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRI 405

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L+Q+     + DT  +N +I  + +  + E+   L   M++    P+  T++ +I     
Sbjct: 406 LKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQ 465

Query: 324 LGMTEAAQNLENKMIA--MKENS 344
           +G +E A  L  +MIA  +K N+
Sbjct: 466 IGESERASGLLEQMIADGLKPNA 488



 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 37/182 (20%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +   A  +F  ++  GL P+   YT L+  Y ++G + +A    N+M +     
Sbjct: 707 GFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLT-EGVA 765

Query: 63  PDVYTYSILIKSC----------------------------TKFHRFDLIEKILAEMSYL 94
           PD + YS+L   C                            T  H F    K+   + +L
Sbjct: 766 PDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKRGKLQETVKFL 825

Query: 95  ------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
                  I  S +T   I+ G G+A K  E  + F  + +    H D   L+S+ +   N
Sbjct: 826 HVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNASHRDTDHLSSLFTDMIN 885

Query: 149 SG 150
            G
Sbjct: 886 QG 887


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 155/318 (48%), Gaps = 2/318 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + E MLS G  P +  Y  L+    + G L  A   +N+M+ +  C+P+V TY+ILI   
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQ-IKGCEPNVITYTILIDRF 59

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R +    +L EMS  G+  +AV YN +I    K +K ++  + F  M  S GC PD
Sbjct: 60  CKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM-SSKGCKPD 118

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           IFT NS+I         E+    Y +  L GV A+  T N L  ++ R G   +   +++
Sbjct: 119 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 178

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M  R      +TYN +I+   +AG+IEK    F+ M  +G+ PN+I+   L++   + G
Sbjct: 179 DMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTG 238

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I      LR + +  +  D   +N +I+   + G  ++   LF  ++     PD IT+ 
Sbjct: 239 NIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYN 298

Query: 316 TMIQAYNALGMTEAAQNL 333
           T+I  +   GM + A  L
Sbjct: 299 TLISWHCKEGMFDDAHLL 316



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 4/289 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   E+A  + + M   GL  +   Y  L+SA  +   + +A +   DM S   CKPD
Sbjct: 60  CKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSS-KGCKPD 118

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           ++T++ LI    K ++F+    +  +M   G+  + +TYNT+I  + +    +E     +
Sbjct: 119 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 178

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+  G C  D  T N +I A   +GNIEK    + +    G+  +  + NIL     R 
Sbjct: 179 DMLFRG-CPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRT 237

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G        +  M  R   P +VTYN +I    K G  ++    F K++  G+ P++ITY
Sbjct: 238 GNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITY 297

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +L+S + K G+      +L +  +S  I +   +  ++S + + GD E
Sbjct: 298 NTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 346



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 97/211 (45%)

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           S GC PDIFT N++I      G +    +  NE  + G + ++ T  IL   + + G  +
Sbjct: 7   SVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLE 66

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           + R+V+D M  +      V YN +I    K   ++     F  M  +G KP+  T+ SL+
Sbjct: 67  EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI 126

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               K     +   + + +    VI +T  +N +I A+ + G +++  +L   M  R C 
Sbjct: 127 FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCP 186

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            D+IT+  +I+A    G  E    L   M++
Sbjct: 187 LDDITYNGLIKALCRAGNIEKGLALFEDMMS 217


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 174/371 (46%), Gaps = 44/371 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L KC++      +F+ M S+G+  +V  YTA+++AYG++G    +   +N MK      
Sbjct: 149 LLDKCRE------VFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQ-ERVS 201

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDG------------ 109
           P + TY+ +I +C +    ++ +  + AEM + GI+   +TYNT++              
Sbjct: 202 PSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEM 261

Query: 110 -----------------------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
                                  +GK  + E++      M E GG  PDI + N ++ AY
Sbjct: 262 VFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREM-ECGGNLPDITSYNVLLEAY 320

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G+I++    + +    G  A+  T ++L   YG+ G YD +R +   M+     P  
Sbjct: 321 AELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDA 380

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TYNI+I+ FG+ G+ +++   F  M    ++PN  TY  L+ A  K GL      IL  
Sbjct: 381 GTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLH 440

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +    V+  +  +  +I A+GQA   E+   +F TM E    P   T+ ++I A+   G+
Sbjct: 441 MNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGL 500

Query: 327 TEAAQNLENKM 337
            + A+ + ++M
Sbjct: 501 YKEAEAILSRM 511



 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 168/333 (50%), Gaps = 5/333 (1%)

Query: 2   VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
            +LG C      ++A ++F  M   G+ P ++ Y+ LV  +G+   L++    + +M+  
Sbjct: 245 TLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECG 304

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            +  PD+ +Y++L+++  +         +  +M   G   +A TY+ +++ YGK  ++++
Sbjct: 305 GNL-PDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDD 363

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           +   F  M  S    PD  T N +I  +G  G  +++   +++     V+ ++QT   L 
Sbjct: 364 VRDLFLEMKVSN-TDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLI 422

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            + G+ G+Y+  + ++  M ++   P+   Y  VIE FG+A   E+    F  M   G  
Sbjct: 423 FACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSN 482

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P   TY SL+ A+++ GL  + ++IL ++  S +  D   FN +I A+ Q G  E+  + 
Sbjct: 483 PTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKS 542

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           ++ M++ +C P+ +T   ++  Y + G+ +  +
Sbjct: 543 YVEMEKANCEPNELTLEAVLSIYCSAGLVDEGE 575



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 157/309 (50%), Gaps = 3/309 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+  ++T +++  G+ GLLD+     ++M S    +  VY+Y+ +I +  +  +F    
Sbjct: 131 KPNEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVR-TVYSYTAIINAYGRNGQFHASL 189

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           ++L  M    +  S +TYNT+I+   +    +E +   F+ M    G  PD+ T N+++ 
Sbjct: 190 ELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHE-GIQPDVITYNTLLG 248

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A  + G  ++ E  +   N  G+  DI T + L +++G+    +K+  ++  M+     P
Sbjct: 249 ACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLP 308

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            + +YN+++E + + G I++    F++M+  G   N+ TY  L++ Y K G    V  + 
Sbjct: 309 DITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLF 368

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            +++ S+   D   +N +I  +G+ G  +++  LF  M E +  P+  T+  +I A    
Sbjct: 369 LEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKG 428

Query: 325 GMTEAAQNL 333
           G+ E A+ +
Sbjct: 429 GLYEDAKKI 437



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 153/338 (45%), Gaps = 2/338 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK  + E+ S L   M   G  P +  Y  L+ AY + G + EA      M++ + C  
Sbjct: 285 FGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQA-AGCVA 343

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TYS+L+    K  R+D +  +  EM     +  A TYN +I  +G+   F+E+ + F
Sbjct: 344 NAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLF 403

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E     P++ T   +I A G  G  E  +K     N  GV    +    + +++G+
Sbjct: 404 HDMAEEN-VEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQ 462

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A +Y++   + + M +    PTV TYN +I  F + G  ++ E    +M   G+K +  +
Sbjct: 463 AALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHS 522

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           +  ++ A+ + G   +      ++E ++   +      ++S Y  AG V++  E F  +K
Sbjct: 523 FNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIK 582

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
               +P  + +  M+  Y        A NL + MI M+
Sbjct: 583 ASGILPSVMCYCMMLALYAKNDRLNDAYNLIDAMITMR 620



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 109/218 (50%), Gaps = 1/218 (0%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M     C P+      MI+  G  G ++K  + ++E    GV   + +   +  +YG
Sbjct: 121 FKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYG 180

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNS 241
           R G +     +++ M++    P+++TYN VI    + G   E +   F +M+H G++P+ 
Sbjct: 181 RNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDV 240

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           ITY +L+ A +  GL  + + + R +  S ++ D   ++ ++  +G+   +EK+ EL   
Sbjct: 241 ITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLRE 300

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M+    +PD  ++  +++AY  LG  + A  +  +M A
Sbjct: 301 MECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQA 338


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 160/328 (48%), Gaps = 2/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A      M   GL P   +YT ++  + ++G + EA    ++M     C PDV TY+ 
Sbjct: 314 DHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFG-CLPDVVTYNT 372

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K HR    EK+L EM   G+     T+ T+I GY +   FE     F  ++   
Sbjct: 373 LLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQR 432

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T NS+I      G++ K  + +++ +   +  +  T +IL  S+   G  +  
Sbjct: 433 -LRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDA 491

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              +D M K+   P + TYN +I+ + ++G+++K +++ +KM+   + P+ IT+ +L+  
Sbjct: 492 FGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHG 551

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K   +    ++   +E   V  D   +N II+ + + G+++  G +F  M +    PD
Sbjct: 552 YIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPD 611

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
             T+ ++I  +   G ++ A  L ++MI
Sbjct: 612 RYTYMSLINGHVTAGNSKQAFQLHDEMI 639



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK    ++A  +F  M    + P V  +  L+  + + G + EA     +M+   
Sbjct: 233 VLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQH-R 291

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PDV ++S LI   ++    D     L EM  LG+    V Y  +I G+ +A    E 
Sbjct: 292 YVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEA 351

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 MV   GC PD+ T N++++       +   EK  NE    GV  D+ T   L  
Sbjct: 352 LRVRDEMV-GFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIH 410

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y R G ++    + D + ++   P VVTYN +I+   + G + K  E +  M  R + P
Sbjct: 411 GYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILP 470

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N ITY  L+ ++ + G +      L ++     + +   +N II  Y ++G+V+K  +  
Sbjct: 471 NHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFL 530

Query: 300 LTMKERHCVPDNITFATMIQAY 321
             M++ +  PD ITF T+I  Y
Sbjct: 531 QKMRQDNVFPDLITFNTLIHGY 552



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 157/339 (46%), Gaps = 2/339 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +L +   P  A   + ++LS   + +      +V +Y ++   D A + I++M+    
Sbjct: 129 LAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRC- 187

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PDV T+++LI +  +    D    ++  M+  G++   VTYN+++ G  K ++F++ +
Sbjct: 188 VFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAK 247

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M +     PD+ + N +I  +   G +++  K+Y E     V  D+ + + L   
Sbjct: 248 EVFRTM-DQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGL 306

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + R G  D   + +  M+     P  V Y +VI  F +AG + +      +M   G  P+
Sbjct: 307 FSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPD 366

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY +L++   K   ++  + +L ++E   V  D   F  +I  Y + G+ E   +LF 
Sbjct: 367 VVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFD 426

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           T+  +   PD +T+ ++I      G    A  L + M A
Sbjct: 427 TLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHA 465



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 153/339 (45%), Gaps = 8/339 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG---LLDEAFSTINDMKSVSDCK 62
           + ++P +A   F ++L   +        AL++   ++G   L  EA+  +      SD +
Sbjct: 99  QSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRLVLS----SDSE 154

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            + YT +I++ S  K   FD  + +++EM    +    VT+N +ID   +A   +   + 
Sbjct: 155 VNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             +M   G   P I T NS++         +K ++ +   +   V  D+++ NIL   + 
Sbjct: 215 VDSMANRG-LKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFC 273

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G   +       MQ R+  P VV+++ +I  F + G ++    Y ++MK  G+ P+ +
Sbjct: 274 RVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGV 333

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y  ++  + +AG + +   +  ++     + D   +N +++   +   +    +L   M
Sbjct: 334 IYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEM 393

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +ER   PD  TF T+I  Y   G  E A  L + ++  +
Sbjct: 394 EERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQR 432



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 113/228 (49%), Gaps = 1/228 (0%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           ++ +I  Y +++K  E   +F  +++     P   + N++++    +G     ++ Y   
Sbjct: 90  FDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASAS-NALLAVLSRAGWPHLAQEAYRLV 148

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
                + +  TLNI+  SY +   +D   +V+  M+KR  FP VVT+N++I+   +AG +
Sbjct: 149 LSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDV 208

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           +        M +RG+KP  +TY S++    K     K   + R ++   V  D   FN +
Sbjct: 209 DAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNIL 268

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           I  + + G+V++  + +  M+ R+  PD ++F+ +I  ++  G  + A
Sbjct: 269 IGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHA 316


>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 589

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 173/338 (51%), Gaps = 30/338 (8%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L+  +L     P+ D YT L+ AY  +GL+++A + + +M++     P V  Y+ 
Sbjct: 185 KEAESLYVQLLESRCVPTEDTYTLLIKAYCMAGLIEKAEAVLIEMQN-HHVSPSVTVYNA 243

Query: 71  LIKSCTKFHRFDLIEK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
            I+   K  R    E+   +   M     + +  TYN +I+ YGKA K   M       +
Sbjct: 244 YIEGLMK--RKGNTEQAIDVFQRMKRDRCKPTTETYNLMINLYGKASK-SYMSWKLFCEM 300

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE--------------------FNLM-- 165
            S  C P+I T  ++++A+   G  EK E+ + +                    F+LM  
Sbjct: 301 RSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEIFSLMQH 360

Query: 166 -GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G + D  + NI+  +YGRAG++    +V + M++    PT+ ++ +++  + +A  + K
Sbjct: 361 MGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDVTK 420

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
            E   K+M   G++P++    S+++ Y + G   K++ IL ++EN     D   +N +I+
Sbjct: 421 CEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILIN 480

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
            YG+AG +E++ ELF+ +KER+  PD +T+ + I AY+
Sbjct: 481 IYGKAGFLERIEELFVELKERNFKPDVVTWTSRIGAYS 518



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 154/318 (48%), Gaps = 31/318 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           EQA  +F+ M  D  KP+ + Y  +++ YG++     ++    +M+S   CKP++ TY+ 
Sbjct: 256 EQAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLFCEMRS-HQCKPNICTYTA 314

Query: 71  LIKSCTKFHRFDLIEK--------------------------ILAEMSYLGIECSAVTYN 104
           L+ +   F R  L EK                          I + M ++G E    +YN
Sbjct: 315 LVNA---FAREGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEIFSLMQHMGCEPDRASYN 371

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            ++D YG+A    + E+ F  M +  G  P + +   ++SAY  + ++ K E    E + 
Sbjct: 372 IMVDAYGRAGLHSDAEAVFEEM-KRLGIAPTMKSHMLLLSAYSRARDVTKCEAIVKEMSE 430

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            GV+ D   LN +   YGR G + KM  ++  M+       + TYNI+I  +GKAG +E+
Sbjct: 431 NGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLER 490

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
           +EE F ++K R  KP+ +T+ S + AYS+  L +K   I  ++ +S    D      ++S
Sbjct: 491 IEELFVELKERNFKPDVVTWTSRIGAYSRKKLYVKCLEIFEEMIDSGCAPDGGTAKVLLS 550

Query: 285 AYGQAGDVEKMGELFLTM 302
           A      VE++  +  TM
Sbjct: 551 ACSSEDQVEQVTSVLRTM 568



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 134/289 (46%), Gaps = 31/289 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA-------------- 48
           + GK  +   +  LF  M S   KP++  YTALV+A+ + GL ++A              
Sbjct: 283 LYGKASKSYMSWKLFCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHID 342

Query: 49  ------------FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 96
                       FS +  M     C+PD  +Y+I++ +  +       E +  EM  LGI
Sbjct: 343 SRAGYPYGAAEIFSLMQHM----GCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGI 398

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
             +  ++  ++  Y +A+   + E+    M E+ G  PD F LNSM++ YG  G   KME
Sbjct: 399 APTMKSHMLLLSAYSRARDVTKCEAIVKEMSEN-GVEPDTFVLNSMLNLYGRLGQFTKME 457

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           K   E       ADI T NIL   YG+AG  +++  +   +++R F P VVT+   I  +
Sbjct: 458 KILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKERNFKPDVVTWTSRIGAY 517

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
            +     K  E F++M   G  P+  T   L+SA S    + +V S+LR
Sbjct: 518 SRKKLYVKCLEIFEEMIDSGCAPDGGTAKVLLSACSSEDQVEQVTSVLR 566



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 133/294 (45%), Gaps = 18/294 (6%)

Query: 46  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI-EKILAEMSYLGIECSAVTYN 104
           D+    +  + S      D+   S+ ++   K+    L+ E IL   S+   +   + +N
Sbjct: 116 DKVADVLGALPSTHASWDDLINVSVQLRLNKKWDSIILVCEWILRRSSF---QPDVICFN 172

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +ID YG+  +F+E ES +  ++ES  C P   T   +I AY  +G IEK E    E   
Sbjct: 173 LLIDAYGQKFRFKEAESLYVQLLES-RCVPTEDTYTLLIKAYCMAGLIEKAEAVLIEMQN 231

Query: 165 MGVKADIQTLNILTKSY-GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
             V   +   N   +    R G  ++   V   M++    PT  TYN++I  +GKA    
Sbjct: 232 HHVSPSVTVYNAYIEGLMKRKGNTEQAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSY 291

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
              + F +M+    KPN  TY +LV+A+++ GL  K + I  Q++  D  +D+       
Sbjct: 292 MSWKLFCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE-DGHIDS------- 343

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               +AG      E+F  M+   C PD  ++  M+ AY   G+   A+ +  +M
Sbjct: 344 ----RAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEM 393



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 2/195 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+      A  +FE M   G+ P++  +  L+SAY ++  + +  + + +M S +  +PD
Sbjct: 378 GRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDVTKCEAIVKEM-SENGVEPD 436

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            +  + ++    +  +F  +EKILAEM          TYN +I+ YGKA   E +E  F 
Sbjct: 437 TFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFV 496

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + E     PD+ T  S I AY       K  + + E    G   D  T  +L  +    
Sbjct: 497 ELKERN-FKPDVVTWTSRIGAYSRKKLYVKCLEIFEEMIDSGCAPDGGTAKVLLSACSSE 555

Query: 185 GMYDKMRSVMDFMQK 199
              +++ SV+  M K
Sbjct: 556 DQVEQVTSVLRTMHK 570


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 157/321 (48%), Gaps = 3/321 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK +Q  +A  ++  +L     P+ D Y  L+ AY  +G L  A   I++M+      P+
Sbjct: 329 GKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMRE-HGIPPN 387

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+  +    K    +   ++   M       +  T+  +I+ YGKAK+       F+
Sbjct: 388 ATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFN 447

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +S GC P+I T  ++++A+   G  EK E+ + E    G + D+   N L ++Y RA
Sbjct: 448 EM-KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRA 506

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G+      +   MQ     P   +YNI+++ +G+AG  E  E  F+++K RGM P   ++
Sbjct: 507 GLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSH 566

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L++A++++G   + + ++ Q+  S +  DT   N +++AY +AG ++ M  L   M E
Sbjct: 567 MLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAM-E 625

Query: 305 RHCVPDNITFATMIQAYNALG 325
           R    D  T+   + AY   G
Sbjct: 626 RRGDADVGTYNVAVNAYGRAG 646



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 158/301 (52%), Gaps = 3/301 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK KQP  +  +F  M S G KP++  YTALV+A+ + GL ++A     +M+     +PD
Sbjct: 434 GKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPD 492

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VY Y+ L+++ ++        +I + M ++G E    +YN ++D YG+A   E+ E+ F 
Sbjct: 493 VYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFE 552

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + + G   P + +   +++A+  SGN  + E+   + +  G+  D   LN +  +Y RA
Sbjct: 553 ELKQRG-MSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARA 611

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D M  ++  M++R     V TYN+ +  +G+AG++ +ME  F  +  RG+  + +T+
Sbjct: 612 GRLDDMERLLAAMERRGD-ADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTW 670

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            + + AY++     +   ++ ++ ++    D      +++A      VE++  +  +M +
Sbjct: 671 TARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRSMHK 730

Query: 305 R 305
           +
Sbjct: 731 K 731



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 151/325 (46%), Gaps = 5/325 (1%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
           ++     +P +  Y  L+ +YG+   L++A S    +   + C P   TY++L+++    
Sbjct: 308 ILYRSSFRPDIICYNLLIESYGKKRQLNKAESIYMALLE-AQCVPTEDTYALLLRAYCNA 366

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
                 E +++EM   GI  +A  YN  +DG  KA+  E+    +  M +   C  +  T
Sbjct: 367 GSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRM-KRERCRANTET 425

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
              MI+ YG +       K +NE   +G K +I T   L  ++ R G+ +K   V + MQ
Sbjct: 426 FTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 485

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +    P V  YN ++E + +AG  +   E F  M+H G +P+  +Y  LV AY +AGL  
Sbjct: 486 QAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHE 545

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             +++  +++   +         +++A+ ++G+  +  E+   + +    PD      M+
Sbjct: 546 DAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAML 605

Query: 319 QAYNALGMTEAAQNLENKMIAMKEN 343
            AY   G  +   ++E  + AM+  
Sbjct: 606 NAYARAGRLD---DMERLLAAMERR 627



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 148/317 (46%), Gaps = 3/317 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  E+A  +++ M  +  + + + +T +++ YG++     +    N+MKS+  CKP
Sbjct: 398 LLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG-CKP 456

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A   +     F
Sbjct: 457 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 516

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M +  GC PD  + N ++ AYG +G  E  E  + E    G+   +++  +L  ++ R
Sbjct: 517 SLM-QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHAR 575

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G   +   VM  + K    P     N ++  + +AG ++ ME     M+ RG   +  T
Sbjct: 576 SGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRG-DADVGT 634

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y   V+AY +AG + ++++    V    +  D   +   + AY +  +  +   +   M 
Sbjct: 635 YNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMV 694

Query: 304 ERHCVPDNITFATMIQA 320
           +  C PD  T   ++ A
Sbjct: 695 DAGCYPDAGTARVLLAA 711


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 172/371 (46%), Gaps = 38/371 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+    E+++ +FE M + G+  SV  YTAL+++YG+ G  + +   +  MK      
Sbjct: 151 LLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKK-EKVT 209

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY+ +I SC +    ++ +  + AEM + GI+   +TYNT+++        +E E 
Sbjct: 210 PSILTYNTVINSCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEM 269

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M E GG  PDI T  +++  +G    +EK+ +   E    G   DI + N+L ++Y
Sbjct: 270 VFRTMNE-GGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAY 328

Query: 182 -----------------------------------GRAGMYDKMRSVMDFMQKRFFFPTV 206
                                              G  G YD +R +   M+     P V
Sbjct: 329 ASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDV 388

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TYN++IE FG+ G+ +++   F  M    ++PN  TY  L+ A  K GL      IL  
Sbjct: 389 GTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLH 448

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           ++   ++  T  +  +I AYGQA   E+   +F TM E    P   T+ ++I  +   G+
Sbjct: 449 MDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGL 508

Query: 327 TEAAQNLENKM 337
            + ++ +  KM
Sbjct: 509 YKESEAIMWKM 519



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 159/354 (44%), Gaps = 43/354 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILI 72
           LF  M  +G++P +  Y  L++A    GL DEA   F T+N+   V    PD+ TY  L+
Sbjct: 235 LFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMV----PDITTYRNLV 290

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
           ++  K ++ + + ++L EM   G      +YN +++ Y            F  M E+  C
Sbjct: 291 ETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEAR-C 349

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG---------- 182
            P+  T + +++ YG  G  + + + + E  +   + D+ T N+L + +G          
Sbjct: 350 VPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVT 409

Query: 183 -------------------------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
                                    + G+++  + ++  M ++   P+   Y  VIE +G
Sbjct: 410 LFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYG 469

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           +A   E+    F  M   G KP   TY SL++ +++ GL  + ++I+ ++  S V  D  
Sbjct: 470 QAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRD 529

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
            FN +I  Y Q G  E+  + ++ +++    PD  TF  ++  Y   G+ + ++
Sbjct: 530 SFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESE 583



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 156/309 (50%), Gaps = 3/309 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+  +YT ++S  G+ GLL+++     +M +       V++Y+ LI S  +  ++++  
Sbjct: 139 KPNEHIYTIIISLLGREGLLEKSTEIFEEMPT-HGVPRSVFSYTALINSYGRHGQYEVSL 197

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           ++L  M    +  S +TYNT+I+   +    +E + S F+ M    G  PDI T N++++
Sbjct: 198 ELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHE-GIQPDIITYNTLLN 256

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A  N G  ++ E  +   N  G+  DI T   L +++G+    +K+  ++  M+     P
Sbjct: 257 ACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLP 316

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            + +YN+++E +   G I      F++M+     PN++TY  L++ Y   G    V  + 
Sbjct: 317 DISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELF 376

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            +++ S+   D   +N +I  +G+ G  +++  LF  M E +  P+  T+  +I A    
Sbjct: 377 LEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKG 436

Query: 325 GMTEAAQNL 333
           G+ E A+ +
Sbjct: 437 GLHEDAKKI 445



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 149/317 (47%), Gaps = 8/317 (2%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           K S++ +  +   + Q G    +      M+    CKP+ + Y+I+I   +   R  L+E
Sbjct: 103 KLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIII---SLLGREGLLE 159

Query: 86  K---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
           K   I  EM   G+  S  +Y  +I+ YG+  ++E        M +     P I T N++
Sbjct: 160 KSTEIFEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEK-VTPSILTYNTV 218

Query: 143 ISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           I++    G N E +   + E    G++ DI T N L  +    G+ D+   V   M +  
Sbjct: 219 INSCARGGLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGG 278

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P + TY  ++ETFGK   +EK+ E  K+M+  G  P+  +Y  L+ AY+  G I    
Sbjct: 279 MVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAM 338

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            + RQ++ +  + +   ++ +++ YG  G  + + ELFL MK  +  PD  T+  +I+ +
Sbjct: 339 GVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVF 398

Query: 322 NALGMTEAAQNLENKMI 338
              G  +    L + M+
Sbjct: 399 GEGGYFKEVVTLFHDMV 415



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 151/338 (44%), Gaps = 2/338 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK  + E+ S L + M S G  P +  Y  L+ AY   G +  A      M+  + C P
Sbjct: 293 FGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQE-ARCVP 351

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TYS+L+       R+D + ++  EM     E    TYN +I+ +G+   F+E+ + F
Sbjct: 352 NAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLF 411

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MVE     P++ T   +I A G  G  E  +K     +  G+    +    + ++YG+
Sbjct: 412 HDMVEEN-VEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQ 470

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A  Y++   + + M +    PTV TYN +I  F + G  ++ E    KM   G+  +  +
Sbjct: 471 AASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDS 530

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           +  ++  Y + G   +      ++E +    D   F  ++S Y  AG V++  E F  ++
Sbjct: 531 FNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQFREIR 590

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
               +P  + +  MI  Y      + A  + ++M+  K
Sbjct: 591 ASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVTNK 628



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 109/223 (48%), Gaps = 10/223 (4%)

Query: 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNEFNLMGVKAD 170
           +AK  E +  + S +VE G    D+ TL + +S+    G+I + +E + N+ +L      
Sbjct: 53  RAKTKELVLGNPSVVVEKGKYSYDVETLINKLSSLPPRGSIARCLEIFKNKLSL------ 106

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYF 229
                ++ K + + G + +   +  +MQ++ +  P    Y I+I   G+ G +EK  E F
Sbjct: 107 -NDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIF 165

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M   G+  +  +Y +L+++Y + G       +L +++   V      +N +I++  + 
Sbjct: 166 EEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARG 225

Query: 290 G-DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           G + E +  LF  M+     PD IT+ T++ A    G+ + A+
Sbjct: 226 GLNWEGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAE 268


>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           micromera]
          Length = 434

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 159/349 (45%), Gaps = 39/349 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK-----------------SV 58
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                 S 
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 61

Query: 59  SDCK-----------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
             C                  PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 62  KXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 122 SYSTLLTMYXENKKFLEALSVFSEMREIK-CXLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLE 240

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 165/355 (46%), Gaps = 37/355 (10%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL------------------------- 35
           M+ LGK  +  +A  L E M   GL+P++  Y  L                         
Sbjct: 289 MLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGM 348

Query: 36  ----------VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
                     + AY ++GL+D   +   +M+   D +P+ Y Y+ +I       ++    
Sbjct: 349 SINKITYCLLIDAYARAGLMDRLEALYQEMRDC-DIRPNTYMYARMITIYRDTGQWQKGV 407

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           K+L EM   G+   A  YN II+ +G+ ++ E+   +F  M + GG  PD+ + NS+I A
Sbjct: 408 KLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKM-QDGGIEPDVVSWNSLIDA 466

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
              +G   +  K Y +    G     QT NI+    G    ++ +  +++ M+ +  FP 
Sbjct: 467 CCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPN 526

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           VVTY  +++ + +A   +   E  + MK  GM P+   Y +L +AY++ G+  +   +L+
Sbjct: 527 VVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQ 586

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            +E  ++ ++    N +I+A+  AG  ++   +F  +KE     D IT+ T+++A
Sbjct: 587 TMEKENIEINLAMLNLLINAFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKA 641



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 154/312 (49%), Gaps = 11/312 (3%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE-----K 86
           Y ALV AY Q+    +A  T++ MK++    PDV +Y+ +I++C    R  +++     +
Sbjct: 179 YNALVGAYAQNRDYGKALETLSKMKTLG-FPPDVVSYTHVIQAC----RHGVVDIYTGFR 233

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  EM   G++     YN +I   G+A K  E    F   +++ G   D  +  S++ + 
Sbjct: 234 LFQEMQAEGVQVDGKVYNDLIFACGQAHKPNE-GMFFLEKLQASGLVADRDSYISLMLSL 292

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           G  G   + E    E    G++ +++  N L   Y R G   ++ +V   ++        
Sbjct: 293 GKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINK 352

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           +TY ++I+ + +AG ++++E  +++M+   ++PN+  Y  +++ Y   G   K   +LR+
Sbjct: 353 ITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLRE 412

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           ++ + V  D   +N II+ +G+   +E+    F  M++    PD +++ ++I A    G 
Sbjct: 413 MQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQ 472

Query: 327 TEAAQNLENKMI 338
              A+ L  KM+
Sbjct: 473 PLEARKLYYKMV 484



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 151/339 (44%), Gaps = 4/339 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  +P +     E + + GL    D Y +L+ + G+ G   EA + + +MK     +P+
Sbjct: 258 GQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYG-LRPN 316

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           +  Y+ L+   ++  +   I+ +   +   G+  + +TY  +ID Y +A   + +E+ + 
Sbjct: 317 LKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQ 376

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +     P+ +    MI+ Y ++G  +K  K   E    GV  D    N++  ++GR 
Sbjct: 377 EMRDC-DIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRT 435

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              ++ R     MQ     P VV++N +I+   KAG   +  + + KM + G  P + T+
Sbjct: 436 RQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTF 495

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             ++    +      V+ ++ ++ +  +  +   +  ++  Y QA   +   E   TMKE
Sbjct: 496 NIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKE 555

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
               P    ++ +  AY  LGM E  Q L       KEN
Sbjct: 556 DGMGPSPTAYSALANAYAQLGMCE--QTLHVLQTMEKEN 592



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 145/306 (47%), Gaps = 2/306 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M ++G++    VY  L+ A GQ+   +E    +  +++ S    D  +Y  L+ S 
Sbjct: 234 LFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQA-SGLVADRDSYISLMLSL 292

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R    E +L EM + G+  +   YNT++ GY +  + +++++    ++   G   +
Sbjct: 293 GKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDT-VKTLLRDTGMSIN 351

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T   +I AY  +G ++++E  Y E     ++ +      +   Y   G + K   ++ 
Sbjct: 352 KITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLR 411

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            MQ+    P    YN++I TFG+   +E+    F KM+  G++P+ +++ SL+ A  KAG
Sbjct: 412 EMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAG 471

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
             ++   +  ++ N         FN +I   G+      + E+   M+ +   P+ +T+ 
Sbjct: 472 QPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYT 531

Query: 316 TMIQAY 321
           T++  Y
Sbjct: 532 TLVDVY 537



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 122/253 (48%), Gaps = 12/253 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA----FSTINDMKSVS 59
            G+ +Q EQA + F  M   G++P V  + +L+ A  ++G   EA    +  +ND     
Sbjct: 432 FGRTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVND----- 486

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C P   T++I+I    +  R++ + +++ EM   G+  + VTY T++D Y +A+ F++ 
Sbjct: 487 GCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDA 546

Query: 120 ESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                 M E G G  P  ++  ++ +AY   G  E+            ++ ++  LN+L 
Sbjct: 547 VECLQTMKEDGMGPSPTAYS--ALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLI 604

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            ++  AG   +  +V +++++       +TY  +++   +A  ++++   F +M   G +
Sbjct: 605 NAFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMIKAGCR 664

Query: 239 PNSITYCSLVSAY 251
           P+      L SA+
Sbjct: 665 PDGKAKDMLRSAF 677


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 182/372 (48%), Gaps = 44/372 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L KC +      +F+ M S G+  SV  YTAL++AYG++G  + +   ++ MK+     
Sbjct: 156 LLDKCLE------VFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKN-EKIS 208

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTII-------------- 107
           P + TY+ +I +C +    ++ +  + AEM + GI+   VTYNT++              
Sbjct: 209 PSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEM 268

Query: 108 ------DG---------------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
                 DG               +GK ++ E++      M  SGG  PDI + N ++ AY
Sbjct: 269 VFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMA-SGGSLPDITSYNVLLEAY 327

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             SG+I++    +++    G   +  T ++L   +G++G YD +R +   M+     P  
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TYNI+IE FG+ G+ +++   F  M    ++P+  TY  ++ A  K GL      IL+ 
Sbjct: 388 ATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQY 447

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +  +D++  +  +  +I A+GQA   E+    F TM E    P   TF +++ ++   G+
Sbjct: 448 MTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGL 507

Query: 327 TEAAQNLENKMI 338
            + ++ + ++++
Sbjct: 508 VKESEAILSRLV 519



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 43/345 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILI 72
           LF  M  +G++P +  Y  L+SA    GL DEA   F T+ND   V    PD+ TYS L+
Sbjct: 234 LFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIV----PDLTTYSHLV 289

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
           ++  K  R + +  +L EM+  G      +YN +++ Y K+   +E    F  M ++ GC
Sbjct: 290 ETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM-QAAGC 348

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG---------- 182
            P+  T + +++ +G SG  + + + + E        D  T NIL + +G          
Sbjct: 349 TPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVT 408

Query: 183 -------------------------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
                                    + G+++  R ++ +M      P+   Y  VIE FG
Sbjct: 409 LFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFG 468

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           +A   E+    F  M   G  P+  T+ SL+ ++++ GL+ + ++IL ++ +S +  +  
Sbjct: 469 QAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRD 528

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
            FN  I AY Q G  E+  + ++ M++  C PD  T   ++  Y+
Sbjct: 529 TFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 162/315 (51%), Gaps = 3/315 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+  +YT ++S  G+ GLLD+     ++M S    +  V++Y+ LI +  +  R++   
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSR-SVFSYTALINAYGRNGRYETSL 196

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           ++L  M    I  S +TYNT+I+   +    +E +   F+ M    G  PDI T N+++S
Sbjct: 197 ELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHE-GIQPDIVTYNTLLS 255

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A    G  ++ E  +   N  G+  D+ T + L +++G+    +K+  ++  M      P
Sbjct: 256 ACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLP 315

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            + +YN+++E + K+G I++    F +M+  G  PN+ TY  L++ + ++G    V  + 
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++++S+   D   +N +I  +G+ G  +++  LF  M E +  PD  T+  +I A    
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKG 435

Query: 325 GMTEAAQNLENKMIA 339
           G+ E A+ +   M A
Sbjct: 436 GLHEDARKILQYMTA 450



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 136/279 (48%), Gaps = 2/279 (0%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKP+ + Y+I+I    +    D   ++  EM   G+  S  +Y  +I+ YG+  ++E   
Sbjct: 137 CKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSL 196

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                M ++    P I T N++I+A    G + E +   + E    G++ DI T N L  
Sbjct: 197 ELLDRM-KNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLS 255

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +    G+ D+   V   M      P + TY+ ++ETFGK   +EK+ +   +M   G  P
Sbjct: 256 ACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLP 315

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  +Y  L+ AY+K+G I +   +  Q++ +    +   ++ +++ +GQ+G  + + +LF
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           L MK  +  PD  T+  +I+ +   G  +    L + M+
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMV 414



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 153/340 (45%), Gaps = 5/340 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK ++ E+   L   M S G  P +  Y  L+ AY +SG + EA    + M++   C P
Sbjct: 292 FGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAG-CTP 350

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TYS+L+    +  R+D + ++  EM     +  A TYN +I+ +G+   F+E+ + F
Sbjct: 351 NANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLF 410

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MVE     PD+ T   +I A G  G  E   K         +    +    + +++G+
Sbjct: 411 HDMVEEN-IEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQ 469

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A +Y++     + M +    P++ T++ ++ +F + G +++ E    ++   G+  N  T
Sbjct: 470 AALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDT 529

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + + + AY + G   +       +E S    D      ++S Y  A  V++  E F  MK
Sbjct: 530 FNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMK 589

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
               +P  + +  M+  Y   G TE   ++   +  M  N
Sbjct: 590 ASDILPSIMCYCMMLAVY---GKTERWDDVNELLEEMLSN 626



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 1/218 (0%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M     C P+      MIS  G  G ++K  + ++E    GV   + +   L  +YG
Sbjct: 128 FKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYG 187

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNS 241
           R G Y+    ++D M+     P+++TYN VI    + G   E +   F +M+H G++P+ 
Sbjct: 188 RNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDI 247

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L+SA +  GL  + + + R + +  ++ D   ++ ++  +G+   +EK+ +L   
Sbjct: 248 VTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGE 307

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M     +PD  ++  +++AY   G  + A  + ++M A
Sbjct: 308 MASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQA 345



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 127/270 (47%), Gaps = 2/270 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + G+  + +    LF  M S    P    Y  L+  +G+ G   E  +  +DM    + +
Sbjct: 361 LFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE-ENIE 419

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+ TY  +I +C K    +   KIL  M+   I  S+  Y  +I+ +G+A  +EE   +
Sbjct: 420 PDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVA 479

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ M E G  +P I T +S++ ++   G +++ E   +     G+  +  T N   ++Y 
Sbjct: 480 FNTMHEVG-SNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYK 538

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G +++       M+K    P   T   V+  +  A  +++  E F++MK   + P+ +
Sbjct: 539 QGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIM 598

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
            YC +++ Y K      V+ +L ++ ++ V
Sbjct: 599 CYCMMLAVYGKTERWDDVNELLEEMLSNRV 628



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 8/222 (3%)

Query: 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
           KAK  + +  + S  VE G    D+ +L + +S+    G+I +        ++   K  +
Sbjct: 52  KAKTKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARC------LDIFKNKLSL 105

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFK 230
               ++ K +   G + +   +  +MQ++ +  P    Y I+I   G+ G ++K  E F 
Sbjct: 106 NDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFD 165

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           +M  +G+  +  +Y +L++AY + G       +L +++N  +      +N +I+A  + G
Sbjct: 166 EMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGG 225

Query: 291 -DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
            D E +  LF  M+     PD +T+ T++ A    G+ + A+
Sbjct: 226 LDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAE 267


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 172/347 (49%), Gaps = 4/347 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +++  C++ +  +A  +F  ML  G+ P +  ++++V  + ++G L  A +    MK V 
Sbjct: 335 MLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVG 394

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD   Y+ILI    +        K+  EM   G     VTYNT+++G  + K  ++ 
Sbjct: 395 -LVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDA 453

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +  F  MVE G   PD +TL ++I  Y   GN+ K    +    L  +K D+ T N L  
Sbjct: 454 DELFKEMVERG-VFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMD 512

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + + G  +K + +   M  R  FP+ ++++I+I  F   G + +    + +MK +G+KP
Sbjct: 513 GFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKP 572

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
             +T  +++  Y +AG + K +  L  + +  V  D   +N +I+++ +  + ++   L 
Sbjct: 573 TLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLI 632

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346
             M+ER  +P+ +T+  ++  ++  G  + A+ + +KMI    N  K
Sbjct: 633 NNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDK 679



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 167/370 (45%), Gaps = 39/370 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + ++  + S  F+++   G   S++   AL+ A  + G +D A+    D     +   +V
Sbjct: 166 QARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIV-NV 224

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YT +I++ +  K  + D +   L+EM   G+    VTYNT+++ Y +     E       
Sbjct: 225 YTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDC 284

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN-ILTKSYGRA 184
           M    G  P +FT N++I+     G+ E+ ++  +E   +G+  +  T N +L +S  + 
Sbjct: 285 MA-GKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKE 343

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
            +++  R V + M +R   P +++++ ++  F + G + +   YF+KMK  G+ P+++ Y
Sbjct: 344 DVWEAER-VFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIY 402

Query: 245 CSLVSAYSK----------------AGLIMKV-------------------DSILRQVEN 269
             L++ Y +                 G +M V                   D + +++  
Sbjct: 403 TILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVE 462

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
             V  D      +I  Y + G++ K   LF TM  R   PD +T+ T++  +  +G  E 
Sbjct: 463 RGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEK 522

Query: 330 AQNLENKMIA 339
           A+ L   MI+
Sbjct: 523 AKELWYDMIS 532



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 149/350 (42%), Gaps = 21/350 (6%)

Query: 8   KQPEQASLLFEVMLSDGLK-------------------PSVDVYTALVSAYGQSGLLDEA 48
           K PE  SLL  ++   G+                     +V V+  L+  Y Q+  L E 
Sbjct: 114 KLPEAQSLLLRIIRKSGVSHVEVIDSLISTSSSNLNSNQNVVVFDLLIRTYVQARKLREG 173

Query: 49  FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 108
                 ++    C   +   + L+ +  K    DL  K+  +    G   +  T N +++
Sbjct: 174 SEAFQLLRKRGFCV-SINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVN 232

Query: 109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
              K  K + +    S M E  G + D+ T N++++AY   G + +     +     G+K
Sbjct: 233 ALCKDGKLDNVGVYLSEM-EEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLK 291

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
             + T N L     + G Y++ + V+D M      P   T+N ++    +   + + E  
Sbjct: 292 PGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERV 351

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F +M  RG+ P+ I++ S+V  +S+ G + +  +   +++   ++ DT  +  +I+ Y +
Sbjct: 352 FNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCR 411

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             DV    ++   M ER CV D +T+ T++       M + A  L  +M+
Sbjct: 412 NDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMV 461



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 1/126 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+     M+S+G+ P    Y  L++++ +    D AF  IN+M+      P++ TY+ +
Sbjct: 592 KANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEE-RGLLPNLVTYNAI 650

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +   ++  R    E +L +M   GI     TY ++I+GY      +E       M++ G 
Sbjct: 651 LGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGF 710

Query: 132 CHPDIF 137
              D F
Sbjct: 711 VPDDKF 716



 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 73/170 (42%)

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           +   ++L ++Y +A    +       ++KR F  ++   N ++    K G ++   + ++
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
                G   N  T   +V+A  K G +  V   L ++E   V  D   +N +++AY + G
Sbjct: 214 DFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRG 273

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            V +   L   M  +   P   T+  +I      G  E A+ + ++M+ +
Sbjct: 274 LVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGV 323


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 177/341 (51%), Gaps = 4/341 (1%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK    ++A+ + E+M  + L P V  Y  L++     G ++EAF   ++M+++
Sbjct: 283 ILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENL 342

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PDV +Y+ LI  C ++ +     K+L EMS  G++ +AVT+N ++  Y K  K ++
Sbjct: 343 K-LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDD 401

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             ++ + M ESG   PD  T N++I+ Y  +GN+ +  +  +E     +K D  TLN + 
Sbjct: 402 ASNTITKMEESG-FSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTIL 460

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           ++  R    ++   ++   +KR +F   V+Y  +I  + K G++++  + + +MK + + 
Sbjct: 461 RTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEII 520

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+++TY  ++    + G   +  S L ++  S ++ D   +N I+  Y + GDVEK  + 
Sbjct: 521 PSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQF 580

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              M E    PD  T   +++     G+ E A  L N  ++
Sbjct: 581 HNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVS 621



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 142/335 (42%), Gaps = 46/335 (13%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF---HRFDL 83
           PS  +    + AY QSG    AF     MK +   +P++ T + L+ S  ++   H    
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLR-LRPNLLTCNTLLNSLVRYPSSHSVSF 191

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             +   +   LGI  +  T+N +I GY    KF++     + M +   C PD  T N+++
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYN-CSPDNVTYNTIL 250

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 G +        +    G+  +  T NIL   Y + G   +  +V++ M +    
Sbjct: 251 DTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLL 310

Query: 204 PTVVTYNIVIETFGKAGHIE--------------------------------KMEEYFK- 230
           P V TYN++I      G IE                                K+ E FK 
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 231 --KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
             +M  +G+KPN++T+  +V  Y K G +    + + ++E S    D   +N +I+ Y +
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 289 AGDVEKMGELFLTMKE---RHCVPDNITFATMIQA 320
           AG+   MGE F TM E   ++   D++T  T+++ 
Sbjct: 431 AGN---MGEAFRTMDEMGRKNMKMDSVTLNTILRT 462



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 136/308 (44%), Gaps = 4/308 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   + AS     M   G  P    Y  L++ Y ++G + EAF T+++M    + K D
Sbjct: 394 CKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGR-KNMKMD 452

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             T + ++++  +  + +   K+L+     G     V+Y T+I GY K    +     + 
Sbjct: 453 SVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWD 512

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E     P   T N +I      G  E+     NE    G+  D  T N +   Y R 
Sbjct: 513 EMKEKE-IIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCRE 571

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  +K     + M +  F P V T NI++      G +EK  + F     +G   +++TY
Sbjct: 572 GDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTY 631

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+++  K G +    ++L ++E  ++  D   +N II+A   +G + +  E    M E
Sbjct: 632 NTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLE 691

Query: 305 RHCVPDNI 312
           +  +PD +
Sbjct: 692 KGNLPDQV 699



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R   P+    +  I  + ++G      + FKKMK   ++PN +T  +L+++  +      
Sbjct: 129 RLTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHS 188

Query: 260 VDSILRQVENSDVIL----DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
           V S  R+  N  + L    +   FN +I  Y      +   E    M + +C PDN+T+ 
Sbjct: 189 V-SFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYN 247

Query: 316 TMIQAYNALGMTEAAQNL 333
           T++      G    A++L
Sbjct: 248 TILDTLCKKGRLGDARDL 265


>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 163/316 (51%), Gaps = 6/316 (1%)

Query: 11  EQASLLFEVMLSDGLKP---SVDVYTALVSAY-GQSGLLDEAFSTINDMKSVSDCKPDVY 66
           E+A ++   M +  + P    V VY A +     + G  +EA      MK    CKP   
Sbjct: 229 ERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKR-DRCKPTTE 287

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY+++I    K  +  +  K+  EM     + +  TY  +++ + +    E+ E  F  +
Sbjct: 288 TYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQL 347

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E G   PD++  N+++ +Y  +G      + ++    MG + D  + NI+  +YGRAG+
Sbjct: 348 QEDG-LEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 406

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           +    +V + M++    PT+ ++ +++  + KA  + K E   K+M   G++P++    S
Sbjct: 407 HSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNS 466

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           +++ Y + G   K++ IL ++EN     D   +N +I+ YG+AG +E++ ELF+ +KE++
Sbjct: 467 MLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKN 526

Query: 307 CVPDNITFATMIQAYN 322
             PD +T+ + I AY+
Sbjct: 527 FRPDVVTWTSRIGAYS 542



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 155/300 (51%), Gaps = 2/300 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  +   +  L+  M S   KP++  YTALV+A+ + GL ++A      ++     +
Sbjct: 295 LYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE-DGLE 353

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDVY Y+ L++S ++        +I + M ++G E    +YN ++D YG+A    + E+ 
Sbjct: 354 PDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 413

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  G  P + +   ++SAY  + ++ K E    E +  GV+ D   LN +   YG
Sbjct: 414 FEEM-KRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYG 472

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G + KM  ++  M+       + TYNI+I  +GKAG +E++EE F ++K +  +P+ +
Sbjct: 473 RLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVV 532

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+ S + AYS+  L +K   +  ++ +S    D      ++SA      VE++  +  TM
Sbjct: 533 TWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTM 592



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 162/333 (48%), Gaps = 6/333 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS--VSDCK 62
           G+  Q ++A  L+  +L     P+ D Y  L+ AY  +GL++ A   + +M++  VS   
Sbjct: 188 GQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKT 247

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKI--LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             V  Y+  I+   K  + +  E I     M     + +  TYN +I+ YGKA K   M 
Sbjct: 248 IGVTVYNAYIEGLMK-RKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASK-SYMS 305

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                 + S  C P+I T  ++++A+   G  EK E+ + +    G++ D+   N L +S
Sbjct: 306 WKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMES 365

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y RAG       +   MQ     P   +YNI+++ +G+AG     E  F++MK  G+ P 
Sbjct: 366 YSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPT 425

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             ++  L+SAYSKA  + K ++I++++  + V  DT   N +++ YG+ G   KM ++  
Sbjct: 426 MKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILA 485

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            M+   C  D  T+  +I  Y   G  E  + L
Sbjct: 486 EMENGPCTADISTYNILINIYGKAGFLERIEEL 518



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 141/306 (46%), Gaps = 27/306 (8%)

Query: 46  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI-EKILAEMSYLGIECSAVTYN 104
           D+    +  + S      D+   S+ ++   K+    L+ E IL + S+   +   + +N
Sbjct: 125 DKVADVLGALPSTHASWDDLINVSVQLRLNKKWDSIILVCEWILRKSSF---QPDVICFN 181

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +ID YG+  +++E ES +  ++ES    P   T   +I AY  +G IE+ E        
Sbjct: 182 LLIDAYGQKFQYKEAESLYVQLLESRYV-PTEDTYALLIKAYCMAGLIERAEV------- 233

Query: 165 MGVKADIQTLNILTKSYG-------------RAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
             V  ++Q  ++  K+ G             R G  ++   V   M++    PT  TYN+
Sbjct: 234 --VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNL 291

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I  +GKA       + + +M+    KPN  TY +LV+A+++ GL  K + I  Q++   
Sbjct: 292 MINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDG 351

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           +  D   +N ++ +Y +AG      E+F  M+   C PD  ++  M+ AY   G+   A+
Sbjct: 352 LEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAE 411

Query: 332 NLENKM 337
            +  +M
Sbjct: 412 AVFEEM 417


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 165/345 (47%), Gaps = 37/345 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +  ++L +++ S G+ P V  Y +L+  Y + GL+  A   ++DM++   CKP+VY+Y+I
Sbjct: 371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRN-KGCKPNVYSYTI 429

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  + D    +L EMS  G++ + V +N +I  + K  +  E    F  M   G
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489

Query: 131 GCHPDIFTLNSMIS-----------------------------------AYGNSGNIEKM 155
            C PD++T NS+IS                                   A+   G I++ 
Sbjct: 490 -CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            K  NE    G   D  T N L K   RAG  DK RS+ + M +    P+ ++ NI+I  
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             ++G +E+  E+ K+M  RG  P+ +T+ SL++   +AG I    ++ R+++   +  D
Sbjct: 609 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 668

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           T  FN ++S   + G V     L     E   VP++ T++ ++Q+
Sbjct: 669 TVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQS 713



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 157/335 (46%), Gaps = 5/335 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L KC +  +A  L E M   G  P  + +  ++    +   ++EA   +N M  +    P
Sbjct: 262 LSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML-IRGFAP 320

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY  L+    K  R D  + +   +    I    V +NT+I G+    + ++ ++  
Sbjct: 321 DDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEI----VIFNTLIHGFVTHGRLDDAKAVL 376

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S MV S G  PD+ T NS+I  Y   G +    +  ++    G K ++ +  IL   + +
Sbjct: 377 SDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCK 436

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+  +V++ M      P  V +N +I  F K   I +  E F++M  +G KP+  T
Sbjct: 437 LGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYT 496

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + SL+S   +   I     +LR + +  V+ +T  +N +I+A+ + G++++  +L   M 
Sbjct: 497 FNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMV 556

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +    D IT+ ++I+     G  + A++L  KM+
Sbjct: 557 FQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKML 591



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 152/336 (45%), Gaps = 9/336 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G C +   A+ +F  MLS  + P++  +  ++ A+     +D A S + DM     C P+
Sbjct: 195 GNCHK--VAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTK-HGCVPN 251

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y  LI S +K +R +   ++L EM  +G    A T+N +I G  K  +  E     +
Sbjct: 252 SVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVN 311

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+  G   PD  T   +++     G ++  +  +        K +I   N L   +   
Sbjct: 312 RMLIRGFA-PDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFVTH 366

Query: 185 GMYDKMRSVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           G  D  ++V+ D +      P V TYN +I  + K G +    E    M+++G KPN  +
Sbjct: 367 GRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYS 426

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  LV  + K G I +  ++L ++    +  +T  FNC+ISA+ +   + +  E+F  M 
Sbjct: 427 YTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMP 486

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            + C PD  TF ++I     +   + A  L   MI+
Sbjct: 487 RKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 522



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/328 (18%), Positives = 144/328 (43%), Gaps = 8/328 (2%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+     ++ +++  Y ++G   +    + +M++V  C+P   +Y+++++     +
Sbjct: 137 MKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGN 196

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
              +   +  +M    I  +  T+  ++  +    + +   S    M + G C P+    
Sbjct: 197 CHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHG-CVPNSVIY 255

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            ++I +      + +  +   E  LMG   D +T N +     +    ++   +++ M  
Sbjct: 256 QTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLI 315

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R F P  +TY  ++    K G ++  ++ F    +R  KP  + + +L+  +   G +  
Sbjct: 316 RGFAPDDITYGYLMNGLCKIGRVDAAKDLF----YRIPKPEIVIFNTLIHGFVTHGRLDD 371

Query: 260 VDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             ++L  +  S  ++ D   +N +I  Y + G V    E+   M+ + C P+  ++  ++
Sbjct: 372 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILV 431

Query: 319 QAYNALGMTEAAQNLENKMIA--MKENS 344
             +  LG  + A N+ N+M A  +K N+
Sbjct: 432 DGFCKLGKIDEAYNVLNEMSADGLKPNT 459



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 35/267 (13%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y +LI        F  I+++L +M   GI      + +I+  Y KA    +       M
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 172

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
                C P   + N ++     SGN  K            V A++               
Sbjct: 173 RNVYSCEPTFKSYNVVLEIL-VSGNCHK------------VAANV--------------F 205

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           YD        M  R   PT+ T+ +V++ F     I+      + M   G  PNS+ Y +
Sbjct: 206 YD--------MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQT 257

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+ + SK   + +   +L ++     + D   FN +I    +   + +  ++   M  R 
Sbjct: 258 LIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRG 317

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNL 333
             PD+IT+  ++     +G  +AA++L
Sbjct: 318 FAPDDITYGYLMNGLCKIGRVDAAKDL 344



 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 1/198 (0%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I   G +G  + +++   +    G+         + + Y +AG   +   +M  M+  +
Sbjct: 117 LIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVY 176

Query: 202 FF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              PT  +YN+V+E        +     F  M  R + P   T+  ++ A+     I   
Sbjct: 177 SCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSA 236

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            S+LR +     + ++  +  +I +  +   V +  +L   M    CVPD  TF  +I  
Sbjct: 237 LSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG 296

Query: 321 YNALGMTEAAQNLENKMI 338
                    A  + N+M+
Sbjct: 297 LCKFDRINEAAKMVNRML 314


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 161/328 (49%), Gaps = 9/328 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+ +Q  +A  ++  +L     P+ D Y  L+ AY  SG L  A   I++M+  +   P 
Sbjct: 176 GQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQK-NGLPPT 234

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+  +    K    +   ++   M       +  TY  +I+ YGKAK+       F+
Sbjct: 235 ATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFN 294

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M ++ GC P+I T  ++++A+   G  EK E+ + E    G + D+   N L ++Y RA
Sbjct: 295 EM-KTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRA 353

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G+      +   M+     P   +YNI+++ +G+AG  ++ E  F+++K +GM+P   ++
Sbjct: 354 GLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSH 413

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L+SA++K+G + + + ++ Q+  S +  DT   N +++AYG+AG ++ M  L   M+ 
Sbjct: 414 MLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMER 473

Query: 305 -------RHCVPDNITFATMIQAYNALG 325
                      PD  T+  ++  Y   G
Sbjct: 474 GGDDDAGGGAAPDTSTYNVLVNVYGRAG 501



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 161/305 (52%), Gaps = 9/305 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK KQP  +  +F  M + G KP++  YTALV+A+ + GL ++A     +M+     +PD
Sbjct: 281 GKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPD 339

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VY Y+ L+++ ++        +I + M ++G E    +YN ++D YG+A   +E E++F 
Sbjct: 340 VYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQ 399

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + + G   P + +   ++SA+  SGN+ + E+   + +  G++ D   LN +  +YGRA
Sbjct: 400 ELKQQG-MRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRA 458

Query: 185 GMYDKMRSVMDFMQKRFFF-------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
           G  D M  ++  M++           P   TYN+++  +G+AG++++ME  F+ +  RG+
Sbjct: 459 GRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVNVYGRAGYLDRMEAAFRALAARGL 518

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
             + +T+ S + AY++     +   I  ++ ++    D      +++A      VE++  
Sbjct: 519 AADVVTWTSRIGAYARKKEYGRCLEIFEEMVDAGCYPDAGTAKVLLAACSDERQVEQVTA 578

Query: 298 LFLTM 302
           +  +M
Sbjct: 579 IVRSM 583



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 150/319 (47%), Gaps = 2/319 (0%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
           ++     +P +  Y  L+ AYGQ   L++A S    +   + C P   TY++L+++    
Sbjct: 155 ILYRSSFRPDIICYNLLIDAYGQKRQLNKAESIYMALLE-AHCVPTEDTYALLLRAYCNS 213

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
            +    E +++EM   G+  +A  YN  +DG  KA+  E+    +  M +   C  +  T
Sbjct: 214 GQLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKER-CRTNTET 272

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
              MI+ YG +       K +NE   +G K +I T   L  ++ R G+ +K   V + MQ
Sbjct: 273 YTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 332

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +    P V  YN ++E + +AG  +   E F  M+H G +P+  +Y  LV AY +AGL  
Sbjct: 333 QAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQ 392

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           + ++  ++++   +         ++SA+ ++G+V +  E+   + +    PD      M+
Sbjct: 393 EAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAML 452

Query: 319 QAYNALGMTEAAQNLENKM 337
            AY   G  +  + L   M
Sbjct: 453 NAYGRAGRLDDMERLLGAM 471



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 160/320 (50%), Gaps = 9/320 (2%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q  +A  +   M  +GL P+  VY A +    ++   ++A      MK    C+ +  TY
Sbjct: 215 QLHRAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKK-ERCRTNTETY 273

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +++I    K  +     K+  EM  +G + +  TY  +++ + +    E+ E  F  M +
Sbjct: 274 TLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 333

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           +G   PD++  N+++ AY  +G  +   + ++    MG + D  + NIL  +YGRAG++ 
Sbjct: 334 AGH-EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQ 392

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +  +    ++++   PT+ ++ +++    K+G++ + EE   ++   G++P++    +++
Sbjct: 393 EAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAML 452

Query: 249 SAYSKAGLIMKVDSILRQVENSDVIL-------DTPFFNCIISAYGQAGDVEKMGELFLT 301
           +AY +AG +  ++ +L  +E             DT  +N +++ YG+AG +++M   F  
Sbjct: 453 NAYGRAGRLDDMERLLGAMERGGDDDAGGGAAPDTSTYNVLVNVYGRAGYLDRMEAAFRA 512

Query: 302 MKERHCVPDNITFATMIQAY 321
           +  R    D +T+ + I AY
Sbjct: 513 LAARGLAADVVTWTSRIGAY 532



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 155/324 (47%), Gaps = 9/324 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  E+A  +++ M  +  + + + YT +++ YG++     +    N+MK++  CKP
Sbjct: 245 LLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIG-CKP 303

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A   +     F
Sbjct: 304 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 363

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M E  GC PD  + N ++ AYG +G  ++ E  + E    G++  +++  +L  ++ +
Sbjct: 364 SLM-EHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHAK 422

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK----- 238
           +G   +   VM  + K    P     N ++  +G+AG ++ ME     M+  G       
Sbjct: 423 SGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGGDDDAGGG 482

Query: 239 --PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             P++ TY  LV+ Y +AG + ++++  R +    +  D   +   I AY +  +  +  
Sbjct: 483 AAPDTSTYNVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGAYARKKEYGRCL 542

Query: 297 ELFLTMKERHCVPDNITFATMIQA 320
           E+F  M +  C PD  T   ++ A
Sbjct: 543 EIFEEMVDAGCYPDAGTAKVLLAA 566


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 174/345 (50%), Gaps = 4/345 (1%)

Query: 1   MVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  +   A  + + +++ GL P+  +Y  L++ Y Q+G L+ AFST   MKS 
Sbjct: 341 ILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS- 399

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              KPD  TY+ LI    K  R    + +L EM   G+  +  T+NT+ID YG+  + E+
Sbjct: 400 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 459

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                S M E+G   P++ +  S+++A+  +G I +     ++     V  + Q  N + 
Sbjct: 460 CFIVLSEMQENG-LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAII 518

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y   G  D+   +++ M+     P++VTYN++I+       I + EE    + +  + 
Sbjct: 519 DAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLI 578

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++++Y +L+SA    G I K   + +++    +      ++ +IS  G AG + +M  L
Sbjct: 579 PDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYL 638

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           +  M + + VP N     M++AY+  G    A++L  +M+  + N
Sbjct: 639 YQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQKRNN 683



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 145/305 (47%), Gaps = 2/305 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M+  GLKP+   Y  L+S   ++G + E  + +++M S     PD +TYSIL    
Sbjct: 253 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMAS-QKMVPDGFTYSILFDGL 311

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           ++      +  +  +    G+     T + +++G  K  K    E    ++V +G   P 
Sbjct: 312 SRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAG-LVPT 370

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
               N++I+ Y  +G +E     + +     +K D  T N L     +A      + ++ 
Sbjct: 371 RVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLM 430

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            MQ     PTV T+N +I+ +G+ G +EK      +M+  G+KPN ++Y S+V+A+ K G
Sbjct: 431 EMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNG 490

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I +  +IL  + + DV+ +   +N II AY + G  ++   L   MK     P  +T+ 
Sbjct: 491 KIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYN 550

Query: 316 TMIQA 320
            +I+ 
Sbjct: 551 LLIKG 555



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 143/343 (41%), Gaps = 42/343 (12%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F ++ S G +P    +   V A   +G L EA   +  M       P+ ++Y+++I    
Sbjct: 148 FGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMW 207

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH--- 133
           +  R     ++  EM+   +  + +TYNT+IDG+ K    E   S    MV    CH   
Sbjct: 208 RAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMV----CHGLK 263

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS- 192
           P+  T N ++S    +G + +     +E     +  D  T +IL     R G    M S 
Sbjct: 264 PNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSL 323

Query: 193 ----------------------------------VMDFMQKRFFFPTVVTYNIVIETFGK 218
                                             V+  +      PT V YN +I  + +
Sbjct: 324 FGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQ 383

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
            G +E     F +MK R +KP+ ITY +L++   KA  I     +L +++++ V      
Sbjct: 384 TGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVET 443

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           FN +I AYG+ G +EK   +   M+E    P+ +++ +++ A+
Sbjct: 444 FNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 486



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 128/283 (45%), Gaps = 5/283 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNTIIDGYGKAKKFEEME 120
           +PD + ++  +++C           +L  M   G    +A +YN +I G  +A +  +  
Sbjct: 157 RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 216

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M E     P+  T N+MI  +   G++E      ++    G+K +  T N+L   
Sbjct: 217 EVFDEMTERA-VLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSG 275

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             RAG   +  +++D M  +   P   TY+I+ +   + G  + M   F K    G+   
Sbjct: 276 LCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIG 335

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             T   L++   K G +   + +L+ + N+ ++     +N +I+ Y Q G++E     F 
Sbjct: 336 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFG 395

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
            MK RH  PD+IT+  +I   N L   E   N ++ ++ M++N
Sbjct: 396 QMKSRHIKPDHITYNALI---NGLCKAERITNAQDLLMEMQDN 435


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 151/319 (47%), Gaps = 2/319 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M + G+KP++  Y  +V  Y  SG ++ A + +  MK     +PD +TY  LI    K  
Sbjct: 247 METSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKR-QKIEPDSFTYGSLISGMCKQG 305

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R +   KI  EM   G+  SAV YNT+IDG+      + M S++   +   G  P + T 
Sbjct: 306 RLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD-MASAYKDEMLKKGISPTMSTY 364

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           NS+I A       ++ E    E    G+  D  T NIL   Y R     K   + D M  
Sbjct: 365 NSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLA 424

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               PT  TY  ++    K   +++ ++ FKK+   G+ P++I + +L+  +     +  
Sbjct: 425 SGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKG 484

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +L+ ++   V  D   FN I+  + + G VE+  ELF  MK R   PD+I+F T+I 
Sbjct: 485 AFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLIS 544

Query: 320 AYNALGMTEAAQNLENKMI 338
            Y+  G  + A  + N+M+
Sbjct: 545 GYSRRGDIKDAFRVRNEML 563



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 24/340 (7%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 60
           G CKQ   E+AS +FE M+  GL+PS  +Y  L+  +   G LD A +  ++M  K +S 
Sbjct: 300 GMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGIS- 358

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P + TY+ LI +     R D  E ++ E+   GI   A+TYN +I+GY +    ++  
Sbjct: 359 --PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAF 416

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M+ SG   P   T  S++        +++ +  + +    GV  D    N L   
Sbjct: 417 LLHDEMLASG-IKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDG 475

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           +           ++  M +    P  VT+N +++   + G +E+  E F +MK RG+KP+
Sbjct: 476 HCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPD 535

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF------FNCIISAY--GQAGDV 292
            I++ +L+S YS+ G I     +  +      +LDT F      +N ++      Q GD+
Sbjct: 536 HISFNTLISGYSRRGDIKDAFRVRNE------MLDTGFNPTVLTYNALVQGLCKNQEGDL 589

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
            +  EL   M  +   PD+ T+ T+I+    + + +  +N
Sbjct: 590 AE--ELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENKN 627



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 157/364 (43%), Gaps = 37/364 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + ++A   F  M   G+ P+++   +L+S + +    + A+    +M  +   K  VYT+
Sbjct: 166 RADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLR-IKSSVYTF 224

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I+I    K  +    +  +  M   G++ + VTYNTI+ GY  + + E  ++  + M +
Sbjct: 225 NIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM-K 283

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                PD FT  S+IS     G +E+  K + E    G++      N L   +   G  D
Sbjct: 284 RQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD 343

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
              +  D M K+   PT+ TYN +I         ++ E   K+++ +G+ P++ITY  L+
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILI 403

Query: 249 SAY-----------------------------------SKAGLIMKVDSILRQVENSDVI 273
           + Y                                   SK   + + D + +++ +  V+
Sbjct: 404 NGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVL 463

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   FN +I  +    +V+   EL   M      PD +TF T++Q +   G  E A+ L
Sbjct: 464 PDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAREL 523

Query: 334 ENKM 337
            ++M
Sbjct: 524 FDEM 527



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 140/316 (44%), Gaps = 3/316 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G K S+ V+  L+ +       DEAF     MK      P + T + L+    K +R + 
Sbjct: 147 GFKSSI-VFDYLIKSCCDMNRADEAFECFYTMKE-KGVLPTIETCNSLLSLFLKLNRTEA 204

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              + AEM  L I+ S  T+N +I+   K  K ++ +  F   +E+ G  P+I T N+++
Sbjct: 205 AWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKD-FVGHMETSGVKPNIVTYNTIV 263

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             Y +SG +E  +          ++ D  T   L     + G  ++   + + M ++   
Sbjct: 264 HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLR 323

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P+ V YN +I+ F   G+++    Y  +M  +G+ P   TY SL+ A        + + +
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECM 383

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           +++++   +  D   +N +I+ Y +  + +K   L   M      P   T+ +++   + 
Sbjct: 384 IKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSK 443

Query: 324 LGMTEAAQNLENKMIA 339
               + A +L  K+ +
Sbjct: 444 KNRMKEADDLFKKITS 459



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 105/239 (43%), Gaps = 2/239 (0%)

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           ++ E + A    LG + S++ ++ +I       + +E    F  M E G   P I T NS
Sbjct: 134 EIFEFLAASRDRLGFK-SSIVFDYLIKSCCDMNRADEAFECFYTMKEKG-VLPTIETCNS 191

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           ++S +      E     Y E   + +K+ + T NI+     + G   K +  +  M+   
Sbjct: 192 LLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSG 251

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P +VTYN ++  +  +G +E  +     MK + ++P+S TY SL+S   K G + +  
Sbjct: 252 VKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEAS 311

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            I  ++    +      +N +I  +   G+++        M ++   P   T+ ++I A
Sbjct: 312 KIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHA 370



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C++   E+A  LF+ M   G+KP    +  L+S Y + G + +AF   N+M   +
Sbjct: 507 IMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLD-T 565

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112
              P V TY+ L++   K    DL E++L EM   G+     TY T+I+G  K
Sbjct: 566 GFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 91/191 (47%), Gaps = 2/191 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L K  + ++A  LF+ + S+G+ P   ++ AL+  +  +  +  AF  + DM  +    
Sbjct: 440 VLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMK-VP 498

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  T++ +++   +  + +   ++  EM   GI+   +++NT+I GY +    ++    
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRV 558

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M+++ G +P + T N+++     +   +  E+   E    G+  D  T   L +   
Sbjct: 559 RNEMLDT-GFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIA 617

Query: 183 RAGMYDKMRSV 193
           +  + D+ ++ 
Sbjct: 618 KVNIPDENKNT 628


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 160/316 (50%), Gaps = 2/316 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G+ P +  Y  L+SAY   GL++EAF  ++ M S     P VYTY+ +I    K  +++ 
Sbjct: 255 GVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPS-KGFSPGVYTYNTVINGLCKHGKYER 313

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            +++ AEM   G+   + TY +++    K     E E+ FS M  S    PD+   +SM+
Sbjct: 314 AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDM-RSRDVVPDLVCFSSMM 372

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           S +  SGN++K   ++N     G+  D     IL + Y R GM  +  ++ + M ++   
Sbjct: 373 SLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCA 432

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
             VVTYN ++    K   + + ++ F +M  RG+ P+S T   L+  + K G +     +
Sbjct: 433 MDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMEL 492

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
            ++++   + LD   +N ++  +G+ GD++   E++  M  +  +P  I+F+ ++ A  +
Sbjct: 493 FKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCS 552

Query: 324 LGMTEAAQNLENKMIA 339
            G    A  + ++MI+
Sbjct: 553 KGHLSEAFRVWDEMIS 568



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 137/280 (48%), Gaps = 1/280 (0%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S+C  +   + +LI++  +  +     +    +   G   S    N +I    +   + E
Sbjct: 149 SNCGSNDSVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIG-WVE 207

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           +       +   G   +++TLN M++A    G +EK+  + +E    GV  DI T N L 
Sbjct: 208 LAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLI 267

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y   G+ ++   +M  M  + F P V TYN VI    K G  E+ +E F +M   G+ 
Sbjct: 268 SAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLS 327

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+S TY SL+    K G  ++ ++I   + + DV+ D   F+ ++S + ++G+++K    
Sbjct: 328 PDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMY 387

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F ++KE   +PDN+ +  +IQ Y   GM   A NL N+M+
Sbjct: 388 FNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEML 427



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 156/332 (46%), Gaps = 2/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + ++  +A   F ++ S G   S+D   AL+ +  + G ++ A+    ++ S S    +V
Sbjct: 167 QARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEI-SRSGVGVNV 225

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YT +I++ +  K  + + +   L+E+   G+    VTYNT+I  Y      EE      A
Sbjct: 226 YTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHA 285

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M  S G  P ++T N++I+     G  E+ ++ + E    G+  D  T   L     + G
Sbjct: 286 M-PSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKG 344

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              +  ++   M+ R   P +V ++ ++  F ++G+++K   YF  +K  G+ P+++ Y 
Sbjct: 345 DAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 404

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+  Y + G+I +  ++  ++      +D   +N I+    +   + +  +LF  M ER
Sbjct: 405 ILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 464

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              PD+ T   +I  +  LG  + A  L  KM
Sbjct: 465 GLFPDSYTLTILIDGHCKLGNLQNAMELFKKM 496



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 161/349 (46%), Gaps = 6/349 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +++  CK+ +  +   +F  M S  + P +  +++++S + +SG LD+A    N +K  +
Sbjct: 336 LLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE-A 394

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD   Y+ILI+   +         +  EM   G     VTYNTI+ G  K K   E 
Sbjct: 395 GLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEA 454

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +  F+ M E G   PD +TL  +I  +   GN++   + + +     +K D+ T N L  
Sbjct: 455 DKLFNEMTERG-LFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLD 513

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +G+ G  D  + +   M  +   PT ++++I++      GH+ +    + +M  + +KP
Sbjct: 514 GFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKP 573

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
             +   S++  Y ++G     +  L ++ +   + D   +N +I  + +  ++ K   L 
Sbjct: 574 TVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLV 633

Query: 300 LTMKERH--CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346
             M+E+    VPD  T+ +++  +      + A+ +  KMI    N  +
Sbjct: 634 KKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDR 682



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 146/323 (45%), Gaps = 6/323 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK    E+A  +F  ML  GL P    Y +L+    + G   E  +  +DM+S  
Sbjct: 301 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRS-R 359

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           D  PD+  +S ++   T+    D        +   G+    V Y  +I GY +     E 
Sbjct: 360 DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEA 419

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            +  + M++ G C  D+ T N+++        + + +K +NE    G+  D  TL IL  
Sbjct: 420 MNLRNEMLQQG-CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILID 478

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + + G       +   M+++     VVTYN +++ FGK G I+  +E +  M  + + P
Sbjct: 479 GHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILP 538

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
             I++  LV+A    G + +   +  ++ +  +       N +I  Y ++G+    GE+F
Sbjct: 539 TPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASD-GEIF 597

Query: 300 L-TMKERHCVPDNITFATMIQAY 321
           L  M     VPD I++ T+I  +
Sbjct: 598 LEKMISEGFVPDCISYNTLIYGF 620



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 147/348 (42%), Gaps = 39/348 (11%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +  +    ++A + F  +   GL P   +YT L+  Y + G++ EA +  N+M     
Sbjct: 372 MSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQ-QG 430

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG------------------------- 95
           C  DV TY+ ++    K       +K+  EM+  G                         
Sbjct: 431 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAM 490

Query: 96  ----------IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
                     I+   VTYNT++DG+GK    +  +  ++ MV S    P   + + +++A
Sbjct: 491 ELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMV-SKEILPTPISFSILVNA 549

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
             + G++ +  + ++E     +K  +   N + K Y R+G        ++ M    F P 
Sbjct: 550 LCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPD 609

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKM--KHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
            ++YN +I  F K  ++ K     KKM  K  G+ P+  TY S++  + +   + + +++
Sbjct: 610 CISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAV 669

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           LR++    V  D   +  +I+ +    ++ +       M +R   PD+
Sbjct: 670 LRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDD 717



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 105/237 (44%), Gaps = 18/237 (7%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN------- 151
           ++++ + +I    ++ +  + +S    M+   G    +  +NS++S Y N G+       
Sbjct: 102 TSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVS-RVEIVNSLVSTYSNCGSNDSVFDL 160

Query: 152 -------IEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
                    K+ + Y  F L+   G    I   N L  S  R G  +    +   + +  
Sbjct: 161 LIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSG 220

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
               V T NI++    K G +EK+  +  +++ +G+ P+ +TY +L+SAYS  GL+ +  
Sbjct: 221 VGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAF 280

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
            ++  + +         +N +I+   + G  E+  E+F  M      PD+ T+ +++
Sbjct: 281 ELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 337



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 3/136 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-VSDC 61
           G C+        +  E M+S+G  P    Y  L+  + +   + +AF  +  M+      
Sbjct: 584 GYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGL 643

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PDV+TY+ ++    + ++    E +L +M   G+     TY ++I+G+       E   
Sbjct: 644 VPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFR 703

Query: 122 SFSAMVESGGCHPDIF 137
               M++ G    D F
Sbjct: 704 FHDEMLQRGFSPDDKF 719


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 162/351 (46%), Gaps = 35/351 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK------- 56
           LG C +  +A  +FE M  +GLKP    Y AL+  Y ++GLL +A   +++M+       
Sbjct: 315 LGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPN 374

Query: 57  ---------------------------SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
                                        S+ +P+ Y +S ++ S      +    ++L 
Sbjct: 375 EQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLR 434

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           EM   G+    V YN +ID +GK    +   ++F  M+ S G  PD  T N++I  +  +
Sbjct: 435 EMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRML-SEGIEPDTVTWNTLIDCHCRA 493

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G  ++ E+ + E    G      T NI+  S+G    +D +++++  M+ +   P  VTY
Sbjct: 494 GKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTY 553

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
             +I+ +GK+G      E    MK  G+KP+S  Y +L++AY++ GL  +  S  R +  
Sbjct: 554 TTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRV 613

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +       N +I+A+G+     +   +   MKE    PD +T+ T+++A
Sbjct: 614 DGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKA 664



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 159/331 (48%), Gaps = 7/331 (2%)

Query: 12  QASLLFEV-MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYS 69
           Q+  L+E  +LS     +   Y AL+SA  ++  L++A + I  M+   D  P D   YS
Sbjct: 180 QSEKLYEAFLLSQRQNLTPLTYNALISACARNNDLEKALNLITRMRQ--DGYPSDFVNYS 237

Query: 70  ILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           ++I+S  + +R D  +++K+  E+    +E      N II G+ KA    +    F  +V
Sbjct: 238 LIIRSLMRKNRVDSAILQKLYREIECDKLELDVQLSNDIIVGFAKAGDLSKA-LEFLGVV 296

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           +  G      TL ++I A GN G   + E  + E    G+K   +  N L + Y +AG+ 
Sbjct: 297 QGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLL 356

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                V+  M++    P   TY+ +I+ +G AG  E      K+M+   ++PN+  +  +
Sbjct: 357 KDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRI 416

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +S+Y   G   K   +LR++ENS V  D  F+N +I  +G+   ++     F  M     
Sbjct: 417 LSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGI 476

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            PD +T+ T+I  +   G  + A+ L  +M+
Sbjct: 477 EPDTVTWNTLIDCHCRAGKHDRAEELFEEMM 507


>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
 gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 163/316 (51%), Gaps = 6/316 (1%)

Query: 11  EQASLLFEVMLSDGLKP---SVDVYTALVSAY-GQSGLLDEAFSTINDMKSVSDCKPDVY 66
           E+A ++   M +  + P    V VY A +     + G  +EA      MK    CKP   
Sbjct: 207 ERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKR-DRCKPTTE 265

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY+++I    K  +  +  K+  EM     + +  TY  +++ + +    E+ E  F  +
Sbjct: 266 TYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQL 325

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E G   PD++  N+++ +Y  +G      + ++    MG + D  + NI+  +YGRAG+
Sbjct: 326 QEDG-LEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 384

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           +    +V + M++    PT+ ++ +++  + KA  + K E   K+M   G++P++    S
Sbjct: 385 HSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNS 444

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           +++ Y + G   K++ IL ++EN     D   +N +I+ YG+AG +E++ ELF+ +KE++
Sbjct: 445 MLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKN 504

Query: 307 CVPDNITFATMIQAYN 322
             PD +T+ + I AY+
Sbjct: 505 FRPDVVTWTSRIGAYS 520



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 155/300 (51%), Gaps = 2/300 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  +   +  L+  M S   KP++  YTALV+A+ + GL ++A      ++     +
Sbjct: 273 LYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE-DGLE 331

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDVY Y+ L++S ++        +I + M ++G E    +YN ++D YG+A    + E+ 
Sbjct: 332 PDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 391

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  G  P + +   ++SAY  + ++ K E    E +  GV+ D   LN +   YG
Sbjct: 392 FEEM-KRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYG 450

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G + KM  ++  M+       + TYNI+I  +GKAG +E++EE F ++K +  +P+ +
Sbjct: 451 RLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVV 510

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+ S + AYS+  L +K   +  ++ +S    D      ++SA      VE++  +  TM
Sbjct: 511 TWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTM 570



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 141/306 (46%), Gaps = 27/306 (8%)

Query: 46  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI-EKILAEMSYLGIECSAVTYN 104
           D+    +  + S      D+   S+ ++   K+    L+ E IL + S+   +   + +N
Sbjct: 103 DKVADVLGALPSTHASWDDLINVSVQLRLNKKWDSIILVCEWILRKSSF---QPDVICFN 159

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +ID YG+  +++E ES +  ++ES    P   T   +I AY  +G IE+ E        
Sbjct: 160 LLIDAYGQKFQYKEAESLYVQLLESRYV-PTEDTYALLIKAYCMAGLIERAEV------- 211

Query: 165 MGVKADIQTLNILTKSYG-------------RAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
             V  ++Q  ++  K+ G             R G  ++   V   M++    PT  TYN+
Sbjct: 212 --VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNL 269

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I  +GKA       + + +M+    KPN  TY +LV+A+++ GL  K + I  Q++   
Sbjct: 270 MINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDG 329

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           +  D   +N ++ +Y +AG      E+F  M+   C PD  ++  M+ AY   G+   A+
Sbjct: 330 LEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAE 389

Query: 332 NLENKM 337
            +  +M
Sbjct: 390 AVFEEM 395


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 161/363 (44%), Gaps = 35/363 (9%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  Q ++A  +   M + GL P    Y   + A G+SG   EA   +  M+S     PD
Sbjct: 261 GKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMES-QGVTPD 319

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM----- 119
           V +Y   IK+C    +++    +L EM+  G+  + + +N+ I   GK  ++E+      
Sbjct: 320 VISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLR 379

Query: 120 --------------ESSFSAMVESGGCH---------------PDIFTLNSMISAYGNSG 150
                          S+ +A  +SG                  PD  + NS I A G  G
Sbjct: 380 EVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGG 439

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
             E   +   +    G+  ++ + NI  ++ G  G + +   ++  M  +   P V+TYN
Sbjct: 440 QWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYN 499

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             I+T GK G  EK  +   KMK   M P+SITY S ++A SK G   +  ++LR++   
Sbjct: 500 SAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQ 559

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +  D   +   I AYG+ G  E+  EL   M  +   P+ IT+ ++I+A    G  E A
Sbjct: 560 GLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKA 619

Query: 331 QNL 333
            +L
Sbjct: 620 LDL 622



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 162/339 (47%), Gaps = 2/339 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V  GK  Q E+A  L   + + GL P    + + ++A  +SG   EA   + +M +   
Sbjct: 362 IVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPA-KR 420

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KPD  +Y+  I++C K  ++++  ++  +M   G+  + ++ N  I   G+  +++E  
Sbjct: 421 LKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGL 480

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M  + G  P++ T NS I   G  G  EK      +   + +  D  T N    +
Sbjct: 481 ELLRQM-PAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAA 539

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             + G + +  +++  M  +   P V++Y   I+ +GK G  E+  E  ++M  +G+ PN
Sbjct: 540 CSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPN 599

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ITY S++ A  + G   K   +L++++ + V  D   +N  ISA G+ G  E+  +L  
Sbjct: 600 VITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLR 659

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            M      PD I++ + I+A NA G  E A  L N M A
Sbjct: 660 EMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGA 698



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 160/335 (47%), Gaps = 2/335 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G   Q E +  L + M   G+ P+   + + + A G+ G  ++A   + ++ ++    PD
Sbjct: 331 GGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALG-LTPD 389

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +++  I +CTK  R+    ++L EM    ++  A++YN+ I+  GK  ++E M     
Sbjct: 390 ATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWE-MALELR 448

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             + + G  P++ + N  I A G  G  ++  +   +    G+  ++ T N   K+ G+ 
Sbjct: 449 RQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKG 508

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G ++K   ++  M++    P  +TYN  I    K G  ++     ++M  +G+ P+ I+Y
Sbjct: 509 GQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISY 568

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            + + AY K G   +   +LRQ+    +  +   +N +I A G+ G+ EK  +L   +KE
Sbjct: 569 TAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKE 628

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
               PD +++   I A    G  E A +L  +M A
Sbjct: 629 TAVAPDLMSYNLAISACGKRGRWEEALDLLREMPA 663



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 161/336 (47%), Gaps = 3/336 (0%)

Query: 5   GKCKQPEQA-SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           G+  Q E+A  LL E+   +G+ P+V  Y + + A G     + A S + +M    +  P
Sbjct: 155 GRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEACGSGDQWEIAVSLLREMAD-REVVP 213

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  +Y+  IK+C +  +++ +  +L EM  +G+   A+TYN++I G GK  +++E  S  
Sbjct: 214 DEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVL 273

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M  + G  P+  + N  I A G SG  ++  +   +    GV  D+ + +   K+ G 
Sbjct: 274 TEM-SAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGG 332

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G ++    ++D M  R   P  + +N  I   GK G  EK  E  +++   G+ P++ +
Sbjct: 333 GGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATS 392

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + S ++A +K+G   +   +L+++    +  D   +N  I A G+ G  E   EL   M 
Sbjct: 393 FNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMP 452

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +   P+ I+    I+A    G  +    L  +M A
Sbjct: 453 TKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPA 488



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 145/306 (47%), Gaps = 1/306 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           YT  ++  G+ G  ++A   + ++       P+V+ Y+  I++C    ++++   +L EM
Sbjct: 147 YTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEACGSGDQWEIAVSLLREM 206

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
           +   +    ++YN+ I   G+  ++E +      M  S G  PD  T NS+I+  G  G 
Sbjct: 207 ADREVVPDEISYNSAIKACGRGGQWERVIGLLREM-PSVGLTPDAITYNSVITGCGKEGQ 265

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            ++      E +  G+  +  + N+  ++ GR+G + +   V+  M+ +   P V++Y+ 
Sbjct: 266 WKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDA 325

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
            I+  G  G  E   +   +M  RG+ PN+I + S + A  K G   K   +LR+V    
Sbjct: 326 AIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALG 385

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           +  D   FN  I+A  ++G  ++  EL   M  +   PD I++ + I+A    G  E A 
Sbjct: 386 LTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMAL 445

Query: 332 NLENKM 337
            L  +M
Sbjct: 446 ELRRQM 451



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 148/316 (46%), Gaps = 2/316 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  Q E A  L   M + GL P+V      + A G+ G   E    +  M +     P+
Sbjct: 436 GKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPA-QGLTPN 494

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+  IK+C K  +++    +LA+M  L +   ++TYN+ I    K  +++E  +   
Sbjct: 495 VITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLR 554

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M   G   PD+ +  + I AYG +G  E+  +   +    G+  ++ T N + K+ GR 
Sbjct: 555 EMPGQG-LTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRG 613

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G ++K   ++  +++    P +++YN+ I   GK G  E+  +  ++M   G+ P+ I+Y
Sbjct: 614 GEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISY 673

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            S + A +  G   K   +L  +    V      ++  I A G+ G  E+   L   M +
Sbjct: 674 TSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQ 733

Query: 305 RHCVPDNITFATMIQA 320
           R     NI+ + +++A
Sbjct: 734 RGLSHRNISNSLIVEA 749



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 143/322 (44%), Gaps = 2/322 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M +  LKP    Y + + A G+ G  + A      M +     P+V + +I I++C
Sbjct: 412 LLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPT-KGLTPNVISSNIAIRAC 470

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  R+    ++L +M   G+  + +TYN+ I   GK  ++E+     + M E     PD
Sbjct: 471 GERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELA-MTPD 529

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T NS I+A    G  ++      E    G+  D+ +      +YG+ G +++   ++ 
Sbjct: 530 SITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLR 589

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M  +   P V+TYN VI+  G+ G  EK  +  K++K   + P+ ++Y   +SA  K G
Sbjct: 590 QMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRG 649

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
              +   +LR++    +  D   +   I A    G+ EK   L   M      P   +++
Sbjct: 650 RWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYS 709

Query: 316 TMIQAYNALGMTEAAQNLENKM 337
             I+A    G  E A  L  +M
Sbjct: 710 LAIEACGKGGRREEAVCLVREM 731



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 135/302 (44%), Gaps = 6/302 (1%)

Query: 42  SGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL-GIECS 99
           +G   EA   +++MK     C    ++Y+  I +C +  +++   ++L E+    G+  +
Sbjct: 123 TGKWREALGILDEMKEGGVVC---AHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPN 179

Query: 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
              YN+ I+  G   ++E   S    M +     PD  + NS I A G  G  E++    
Sbjct: 180 VFCYNSAIEACGSGDQWEIAVSLLREMADRE-VVPDEISYNSAIKACGRGGQWERVIGLL 238

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
            E   +G+  D  T N +    G+ G + +  SV+  M  +   P  ++YN+ I   G++
Sbjct: 239 REMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRS 298

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G  ++  E  ++M+ +G+ P+ I+Y + + A    G       +L ++    V  +T  F
Sbjct: 299 GRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHF 358

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N  I A G+ G  EK  EL   +      PD  +F + I A    G  + A  L  +M A
Sbjct: 359 NSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPA 418

Query: 340 MK 341
            +
Sbjct: 419 KR 420



 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  + E+A  L   M ++GL P V  YT+ + A    G  ++A   +N M       P 
Sbjct: 646 GKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLM-GAHGVSPT 704

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
             +YS+ I++C K  R +    ++ EM+  G+    ++ + I++  G   K
Sbjct: 705 ATSYSLAIEACGKGGRREEAVCLVREMAQRGLSHRNISNSLIVEALGDDAK 755


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 169/353 (47%), Gaps = 39/353 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG C + E+A  +FE M  +GL+P    Y AL+  Y ++GLL +A   +++M+  S   P
Sbjct: 316 LGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMER-SGVLP 374

Query: 64  DVYTYSILIKSCTKFHRFD-------------------LIEKILA--------------- 89
           +  TYS+LI +     R++                   +  +ILA               
Sbjct: 375 NEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVL 434

Query: 90  -EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            EM   G+    + YN +ID +GK    +   ++F  M+ S G  PD  T N+++  +  
Sbjct: 435 REMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRML-SEGIEPDTITWNTLVDCHCK 493

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +G  ++ E+ + E    G      T NI+  S+G    +D +++++  M+ +   P  VT
Sbjct: 494 AGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVT 553

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y  +I+ +GK+G  +   E    MK  G+KP+S  Y +L++AY++ GL  +  S    + 
Sbjct: 554 YTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMR 613

Query: 269 NSDVILDTPFFNCIISAYGQ-AGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           +  +       N +I+A+G+   DVE    +   MKE    PD +T+ T+++A
Sbjct: 614 DDGLKPSLLALNSLINAFGKDRRDVEAFV-VLQYMKENDLKPDVVTYTTLMKA 665



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 162/331 (48%), Gaps = 7/331 (2%)

Query: 12  QASLLFEV-MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYS 69
           Q+  L+E  +LS     +   Y AL+SA  ++  +++A + I  M+   D  P D+  YS
Sbjct: 181 QSEKLYEAFLLSQKQNLTPLTYNALISACARNNDIEKALNLICRMRE--DGYPSDLVNYS 238

Query: 70  ILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           ++I+S  K +R +  +++KI  E+    +E     +N II G+ KA   ++    F  +V
Sbjct: 239 LIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKA-LEFLGVV 297

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           +  G      TL ++I   GN G  E+ E  + E    G++   +  N L + Y +AG+ 
Sbjct: 298 QGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLL 357

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                V+  M++    P   TY+++I+ +G A   E      K+M+   ++PN+  +  +
Sbjct: 358 RDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRI 417

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +++Y   G   K   +LR++E+S V  D  F+N +I  +G+   ++     F  M     
Sbjct: 418 LASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGI 477

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            PD IT+ T++  +   G  + A+ L  +M+
Sbjct: 478 EPDTITWNTLVDCHCKAGKHDRAEELFEEMM 508



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 139/308 (45%), Gaps = 2/308 (0%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82
           D L+  V ++  ++  + ++G LD+A   +  ++  S       T   +I       R +
Sbjct: 265 DKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQG-SGLSVKTATLVTVIWGLGNCGRTE 323

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
             E I  EM   G++     YN ++ GY KA    + E   S M E  G  P+  T + +
Sbjct: 324 EAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEM-ERSGVLPNEQTYSLL 382

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           I AYGN+   E       E     V+ +    + +  SY   G + K   V+  M+    
Sbjct: 383 IDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGV 442

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P  + YN++I+TFGK   ++     F +M   G++P++IT+ +LV  + KAG   + + 
Sbjct: 443 RPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEE 502

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           +  ++     +     FN +I+++G     + +  L   M+ +  +P+ +T+ T+I  Y 
Sbjct: 503 LFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYG 562

Query: 323 ALGMTEAA 330
             G  + A
Sbjct: 563 KSGRFDDA 570


>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 503

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 158/309 (51%), Gaps = 5/309 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L++ M+  G+ PSV V+   + A+  +G L EA     +M+ + +   +V  Y+ILI + 
Sbjct: 161 LYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKL-NVPFNVVIYNILIDAY 219

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK---KFEEMESSFSAMVESGGC 132
            +  + +  E ++ EM   GI+ +  TYN +I GY +AK   +F   E     M E+ G 
Sbjct: 220 GRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEM-EASGL 278

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
           +PD+ T   ++ AYG+ G  E+ E+ +N     GV+ +  +   L  +Y      +K   
Sbjct: 279 YPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAAR 338

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
             + ++K+   PTV TY  +++ + +AG +E ++  +K MK  G     +TY +++ A+ 
Sbjct: 339 AFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQ 398

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           K G   +   ++ + +N     D   +N ++++Y + G   K  ++ L MK    +PD+ 
Sbjct: 399 KQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLPDSF 458

Query: 313 TFATMIQAY 321
           T+ T+I  +
Sbjct: 459 TYCTLIYGF 467



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 156/335 (46%), Gaps = 10/335 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD-EAFSTINDMKSVSDCK 62
           LG+   P+QA + F ++  D    SV VY  L++        D E +  +    +  +  
Sbjct: 80  LGRMAMPDQALVFFGMLPKDKQFHSVHVYNTLITCLTNCNRYDLELYHNL----AFYEVF 135

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           PD  T+S+L+ S  K       +  +  +M   GI  S   + T I  +  A + +E   
Sbjct: 136 PDSVTFSVLMNSAVKGGGSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALL 195

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             + M E      ++   N +I AYG  G +E+ E    E    G++ ++ T N L   Y
Sbjct: 196 ITTEM-EKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGY 254

Query: 182 GRAG---MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             A     +     +++ M+    +P VVT+ +++  +G  G  E+ E+ F +MK RG++
Sbjct: 255 LEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQ 314

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PNS +Y +L++AY++     K       +    V      +  ++ AY +AGD+E +  +
Sbjct: 315 PNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAV 374

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           + +MK   CV   +T+ T++ A+   G  + A++L
Sbjct: 375 WKSMKVEGCVATRVTYMTILDAFQKQGRYKEARDL 409



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 144/313 (46%), Gaps = 14/313 (4%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           +T L +  G+  + D+A      +         V+ Y+ LI   T  +R+DL  ++   +
Sbjct: 73  FTILFTFLGRMAMPDQALVFFGMLPKDKQFH-SVHVYNTLITCLTNCNRYDL--ELYHNL 129

Query: 92  SYLGIECSAVTY----NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
           ++  +   +VT+    N+ + G G  K   E+ + +  MV+ G   P +    + I A+ 
Sbjct: 130 AFYEVFPDSVTFSVLMNSAVKGGGSLK---EVWALYQDMVQRG-ISPSVSVFGTFIKAFC 185

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
           ++G +++      E   + V  ++   NIL  +YGR G  ++   +M  M++R   P V 
Sbjct: 186 DAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVG 245

Query: 208 TYNIVIETFGKAGHIEKM---EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           TYN +I  + +A    +    E   ++M+  G+ P+ +T+  L+ AY   GL  + + + 
Sbjct: 246 TYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVF 305

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            +++   V  ++  +  +I+AY +    EK    F  ++++   P   T+  ++ AY   
Sbjct: 306 NRMKARGVQPNSYSYTALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRA 365

Query: 325 GMTEAAQNLENKM 337
           G  E  Q +   M
Sbjct: 366 GDLEMVQAVWKSM 378



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 92/207 (44%), Gaps = 33/207 (15%)

Query: 134 PDIFTLNSMI-SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
           PD  T + ++ SA    G+++++   Y +    G+   +       K++  AG   +   
Sbjct: 136 PDSVTFSVLMNSAVKGGGSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALL 195

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   M+K      VV YNI+I+ +G+ G +E+ E    +M+ RG++PN  TY +L++ Y 
Sbjct: 196 ITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYL 255

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           +A          RQ                + A G   ++E  G            PD +
Sbjct: 256 EA-------KPKRQ---------------FVVAEGLIEEMEASG----------LYPDVV 283

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           TF  ++ AY   G+TE A+ + N+M A
Sbjct: 284 TFTMLLGAYGHEGLTEQAEQVFNRMKA 310


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 166/354 (46%), Gaps = 38/354 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  + E A  +FE  LS+G   +V  ++AL+SAYG+SG  DEA      MK VS  KP
Sbjct: 197 LGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMK-VSGLKP 255

Query: 64  DVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           ++ TY+ +I +C K    F  + +I  EM   G++   +TYN+++    +   +E   + 
Sbjct: 256 NLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNL 315

Query: 123 FSAMVESGGCHPDIFTLNSMISA-----------------------------------YG 147
           F+ M++ G    D+FT N+++ A                                   Y 
Sbjct: 316 FNEMIDRG-IDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYA 374

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            +G +E     YNE   +G+  D  + N L   Y + G ++    V   M        VV
Sbjct: 375 KAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVV 434

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TYN +++ +GK G   ++   FK+MK   + PN +TY +L+  YSK  L  +   + R+ 
Sbjct: 435 TYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREF 494

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           + + +  D   ++ +I+A  + G V+    L   M +    P+ +T+ ++I A+
Sbjct: 495 KQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAF 548



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 1/113 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  +  + + +F+ M  D + P++  Y+ L+  Y +  L +EA     + K  +  K D
Sbjct: 444 GKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQ-AGLKAD 502

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           V  YS LI +  K    D    +L EM+  GI  + VTYN+IID +G++   E
Sbjct: 503 VVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAE 555


>gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 155/325 (47%), Gaps = 5/325 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G +P   VY AL++A+     ++  L++    ++ MK +
Sbjct: 142 VMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGI 201

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P+V TY+IL+++  +  + D +  +  ++    +     T+N ++D YGK    +E
Sbjct: 202 ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKE 261

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           ME+  + M  S  C PDI T N +I +YG     EKME+ +        K  + T N + 
Sbjct: 262 MEAVLTRM-RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMI 320

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A M DK   V   M    + P+ +TY  +I  +G  G + +  E F+++      
Sbjct: 321 INYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRV 380

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
             + T  +++  Y + GL ++ D +        V  D   +  +  AY +A   E++  L
Sbjct: 381 LKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQIL 440

Query: 299 FLTMKERHCVPDNITFATMIQAYNA 323
              M++   VP+   F   ++ + +
Sbjct: 441 MKKMEKDGIVPNKRFFLEALEVFGS 465



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 151/318 (47%), Gaps = 11/318 (3%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P   VY+ L+S  G+ G    A    ++MK+ S C+PD   Y+ LI +    H  D  + 
Sbjct: 131 PDNGVYSKLISVMGKKGQTRMAMWLFSEMKN-SGCRPDASVYNALITA--HLHTRDKAKA 187

Query: 87  ILAEMSYL----GIE-C--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +     YL    GIE C  + VTYN ++  + ++ K +++ + F  + +     PD++T 
Sbjct: 188 LEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDL-DMSPVSPDVYTF 246

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N ++ AYG +G I++ME           K DI T N+L  SYG+   ++KM      + +
Sbjct: 247 NGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMR 306

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               PT+ T+N +I  +GKA  I+K E  FKKM      P+ ITY  ++  Y   G + +
Sbjct: 307 SKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSR 366

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              I  +V  SD +L     N ++  Y + G   +  +LF         PD  T+  + +
Sbjct: 367 AREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYK 426

Query: 320 AYNALGMTEAAQNLENKM 337
           AY    M E  Q L  KM
Sbjct: 427 AYTKADMKEQVQILMKKM 444



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 41/187 (21%)

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           +L +  G++  + +   V  +MQK R++ P    Y+ +I   GK G        F +MK+
Sbjct: 102 LLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKN 161

Query: 235 RGMK----------------------------------------PNSITYCSLVSAYSKA 254
            G +                                        PN +TY  L+ A++++
Sbjct: 162 SGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQS 221

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G + +V+++ + ++ S V  D   FN ++ AYG+ G +++M  +   M+   C PD ITF
Sbjct: 222 GKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITF 281

Query: 315 ATMIQAY 321
             +I +Y
Sbjct: 282 NVLIDSY 288


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 153/323 (47%), Gaps = 1/323 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA+ + E M + G +P +  Y  L +   Q+G +DEAF   ++M+ +    PDV TY+ 
Sbjct: 296 KQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNT 355

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +C K  R      +L EM   G++ S VT+N I+ G  +  + EE       M E G
Sbjct: 356 LVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEG 415

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T N++I A   +GN+ K     +E    G+K D  TLN L  +  +   Y++ 
Sbjct: 416 -LTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEA 474

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++    +R F P  V+Y  V+  + K    E     + +M  R + P+  TY +L+  
Sbjct: 475 EELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKG 534

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            S  G + +    L ++    ++ D   +N II AY + GD+EK  +    M E    PD
Sbjct: 535 LSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPD 594

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
            +T  T++      G  E A  L
Sbjct: 595 VVTCNTLMNGLCLYGRLEKAMKL 617



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 12  QASL-LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           QASL  F  +++  L P+   +  LV  +   G L +A ST++ M+      PD  TY+ 
Sbjct: 191 QASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFG-LSPDAVTYNT 249

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +         +LA M   GI  +  TYNT++  Y +    ++      AM  + 
Sbjct: 250 LLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMT-AF 308

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDK 189
           G  PD++T N + +    +G +++  K  +E   +G V  D+ T N L  +  +      
Sbjct: 309 GFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSD 368

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             ++++ M+++    ++VT+NI+++   + G +E+     + M   G+ P+ ITY +L+ 
Sbjct: 369 ALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLID 428

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           A  KAG + K   ++ ++  S + +DT   N ++    +    E+  EL     +R  VP
Sbjct: 429 ASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVP 488

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           D +++ T++ AY      E A  L ++MI  K
Sbjct: 489 DEVSYGTVMAAYFKEYKPEPALCLWDEMIKRK 520



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 144/332 (43%), Gaps = 2/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC++   A  L E M   G+K S+  +  +V    + G L+EA   + +M +     PDV
Sbjct: 362 KCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRL-EMMTEEGLTPDV 420

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ LI +  K         ++ EM   G++    T NT++    K K++EE E    A
Sbjct: 421 ITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRA 480

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
             + G   PD  +  ++++AY      E     ++E     +   I T N L K     G
Sbjct: 481 PPQRGFV-PDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMG 539

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              +    ++ + +    P   TYNI+I  + K G +EK  ++  KM     KP+ +T  
Sbjct: 540 KLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCN 599

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L++     G + K   +          +D   +N +I A  +  DV+     F  M+ R
Sbjct: 600 TLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVR 659

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              PD  T+  ++ A +  G +  AQ + +K+
Sbjct: 660 GLQPDVFTYNVLLSALSEAGRSVEAQKMLHKL 691



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 141/318 (44%), Gaps = 3/318 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P    Y  L++A+ + G+L EA + +  MK      P   TY+ L+ +  +      
Sbjct: 239 GLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKK-EGIVPTRATYNTLVSAYARLGWIKQ 297

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              ++  M+  G E    TYN +  G  +A K +E       M + G   PD+ T N+++
Sbjct: 298 ATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLV 357

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A               E    GVK+ + T NI+ K   R G  ++    ++ M +    
Sbjct: 358 DACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLT 417

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P V+TYN +I+   KAG++ K      +M   G+K ++ T  +L+    K     + + +
Sbjct: 418 PDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEEL 477

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           LR       + D   +  +++AY +    E    L+  M +R   P   T+ T+I+  + 
Sbjct: 478 LRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLST 537

Query: 324 LG-MTEAAQNLENKMIAM 340
           +G +TEA   L N+++ M
Sbjct: 538 MGKLTEAIDKL-NELMEM 554



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 145/322 (45%), Gaps = 39/322 (12%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G C+  Q E+A    E+M  +GL P V  Y  L+ A  ++G + +AF  +++M   
Sbjct: 390 IIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVR- 448

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILA----------EMSY--------------- 93
           S  K D +T + L+ +  K  R++  E++L           E+SY               
Sbjct: 449 SGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEP 508

Query: 94  ----------LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
                       +  S  TYNT+I G     K  E     + ++E G   PD  T N +I
Sbjct: 509 ALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLV-PDDTTYNIII 567

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AY   G++EK  +++N+      K D+ T N L       G  +K   + +   ++   
Sbjct: 568 HAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKK 627

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
             V+TYN +I+   K   ++    +F  M+ RG++P+  TY  L+SA S+AG  ++   +
Sbjct: 628 VDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKM 687

Query: 264 LRQVENSDVILDTPFFNCIISA 285
           L ++  S  +    F+  I S+
Sbjct: 688 LHKLNESGKLYGRFFYPSIKSS 709



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 120/281 (42%), Gaps = 38/281 (13%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +PE A  L++ M+   L PS+  Y  L+      G L EA   +N++  +    PD  TY
Sbjct: 505 KPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMG-LVPDDTTY 563

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I+I +  K    +   +   +M     +   VT NT+++G     + E+    F + VE
Sbjct: 564 NIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVE 623

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G    D+ T N++I A     +++   +++ +  + G++ D+ T N+L  +   AG   
Sbjct: 624 KGK-KVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSV 682

Query: 189 KMRSVMDFMQK------RFFFPTVVT------------------------------YNIV 212
           + + ++  + +      RFF+P++ +                              YN  
Sbjct: 683 EAQKMLHKLNESGKLYGRFFYPSIKSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKY 742

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           I+     G +++ +    +M  +GM  ++ TY +L+    K
Sbjct: 743 IKELCIGGQLKEAKAVLDEMMQKGMSVDNSTYITLMEGLIK 783


>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 164/359 (45%), Gaps = 39/359 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + KQ + A  LF+ M    L P    Y+ L++++G+ G+ D A S +  M+       D+
Sbjct: 35  RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQ-DRVSGDL 93

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             YS LI+   +   +     I + +   GI    V YN++I+ YGKAK F E       
Sbjct: 94  VLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKE 153

Query: 126 MVESG----------------------------------GCHPDIFTLNSMISAYGNSGN 151
           M E+G                                   C  D+ T N MI  YG    
Sbjct: 154 MNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDM 213

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++ ++ +     M ++ ++ + N + + YG A ++ +   +   MQ++     VVTYN 
Sbjct: 214 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT 273

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ +GK    EK     ++M+ RG++PN+ITY +++S + KAG + +  ++ +++ +S 
Sbjct: 274 MIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSG 333

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           V +D   +  +I AY + G +     L   +K    +PDNI   T I      G TE A
Sbjct: 334 VEIDQVLYQTMIVAYERVGLMGHAKRLLHELK----LPDNIPRETAITILAKAGRTEEA 388



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 158/356 (44%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P +  Y ++++ YG++ L  EA   I +M   +   P+  +YS L+   
Sbjct: 115 IFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNE-AGVLPNTVSYSTLLSVY 173

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            + H+F     + AEM  +       T N +ID YG+    +E +  F ++       P+
Sbjct: 174 VENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSL-RKMDIEPN 232

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG +   E   +  + F LM    ++ ++ T N + K YG+   ++K  +
Sbjct: 233 VVSYNTILRVYGEA---ELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATN 289

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GKAG +++    F+K++  G++ + + Y +++ AY 
Sbjct: 290 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYE 349

Query: 253 KAGLIMKVDSIL-------------------------------RQVENSDVILDTPFFNC 281
           + GL+     +L                               RQ   S  + D   F C
Sbjct: 350 RVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGC 409

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I+ Y +      + E+F  M+     PD+   A ++ AY      E A  +  +M
Sbjct: 410 MINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREM 465



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 143/311 (45%), Gaps = 2/311 (0%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           PSV  Y  ++    ++   D A    ++M+  +   PD YTYS LI S  K   FD    
Sbjct: 21  PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRA-LAPDRYTYSTLITSFGKEGMFDSALS 79

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
            L +M    +    V Y+ +I+   +   + +  S FS +  SG   PD+   NSMI+ Y
Sbjct: 80  WLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSG-ITPDLVAYNSMINVY 138

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           G +    +      E N  GV  +  + + L   Y     + +  SV   M++      +
Sbjct: 139 GKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDL 198

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            T NI+I+ +G+   +++ +  F  ++   ++PN ++Y +++  Y +A L  +   + R 
Sbjct: 199 TTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRL 258

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           ++  D+  +   +N +I  YG+  + EK   L   M+ R   P+ IT++T+I  +   G 
Sbjct: 259 MQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGK 318

Query: 327 TEAAQNLENKM 337
            + A  L  K+
Sbjct: 319 LDRAATLFQKL 329



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 144/334 (43%), Gaps = 37/334 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  +    ++P+V  Y  ++  YG++ L  EA      M+   D + +
Sbjct: 209 GQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQR-KDIEQN 267

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ +IK   K    +    ++ EM   GIE +A+TY+TII  +GKA K +   + F 
Sbjct: 268 VVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQ 327

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-------------------- 164
            +  S G   D     +MI AY   G +   ++  +E  L                    
Sbjct: 328 KL-RSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTE 386

Query: 165 -----------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                       G   DI     +   Y R   Y  +  V + M+   +FP      +V+
Sbjct: 387 EATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVL 446

Query: 214 ETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
             +GK    EK +  +++M+  G + P+ + +  ++S YS       V+S+ +++E SD 
Sbjct: 447 NAYGKQREFEKADTVYREMQEEGCVFPDEVHF-QMLSLYSSKKDFEMVESLFQRLE-SDP 504

Query: 273 ILDTPFFNCIISA-YGQAGDVEKMGELFLTMKER 305
            +++   + +++A Y +A  +     +   M+ER
Sbjct: 505 NVNSKELHLVVAALYERADKLNDASRVMNRMRER 538



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 187 YDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           + +  +++D++ +   + P+V  YN+V+    +A   +     F +M+ R + P+  TY 
Sbjct: 3   WQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYS 62

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L++++ K G+     S L+++E   V  D   ++ +I    +  D  K   +F  +K  
Sbjct: 63  TLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRS 122

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              PD + + +MI  Y    +   A+ L  +M
Sbjct: 123 GITPDLVAYNSMINVYGKAKLFREARLLIKEM 154


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 166/354 (46%), Gaps = 38/354 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  + E A  +FE  LS+G   +V  ++AL+SAYG+SG  DEA      MK VS  KP
Sbjct: 197 LGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMK-VSGLKP 255

Query: 64  DVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           ++ TY+ +I +C K    F  + +I  EM   G++   +TYN+++    +   +E   + 
Sbjct: 256 NLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNL 315

Query: 123 FSAMVESGGCHPDIFTLNSMISA-----------------------------------YG 147
           F+ M++ G    D+FT N+++ A                                   Y 
Sbjct: 316 FNEMIDRG-IDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYA 374

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            +G +E     YNE   +G+  D  + N L   Y + G ++    V   M        VV
Sbjct: 375 KAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVV 434

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TYN +++ +GK G   ++   FK+MK   + PN +TY +L+  YSK  L  +   + R+ 
Sbjct: 435 TYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREF 494

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           + + +  D   ++ +I+A  + G V+    L   M +    P+ +T+ ++I A+
Sbjct: 495 KQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAF 548


>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
 gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
          Length = 397

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 148/299 (49%), Gaps = 3/299 (1%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P+ D Y  L+ AY  +G L  A   I++M+      P+   Y+  +    K    +   +
Sbjct: 10  PTEDTYALLLRAYCNAGSLHRAEGVISEMRE-HGIPPNATVYNAYLDGLLKARCTEKAVE 68

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +   M       +  T+  +I+ YGKAK+       F+ M +S GC P+I T  ++++A+
Sbjct: 69  VYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEM-KSIGCKPNICTYTALVNAF 127

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G  EK E+ + E    G + D+   N L ++Y RAG+      +   MQ     P  
Sbjct: 128 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDR 187

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            +YNI+++ +G+AG  E  E  F+++K RGM P   ++  L++A++++G   + + ++ Q
Sbjct: 188 ASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQ 247

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           +  S +  DT   N +++AY +AG ++ M  LF  M ER    D  T+   + AY   G
Sbjct: 248 LHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAM-ERRGDADVGTYNVAVNAYGRAG 305



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 157/301 (52%), Gaps = 3/301 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK KQP  +  +F  M S G KP++  YTALV+A+ + GL ++A     +M+     +PD
Sbjct: 93  GKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPD 151

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VY Y+ L+++ ++        +I + M ++G E    +YN ++D YG+A   E+ E+ F 
Sbjct: 152 VYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFE 211

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + +  G  P + +   +++A+  SGN  + E+   + +  G+  D   LN +  +Y RA
Sbjct: 212 ELKQR-GMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARA 270

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D M  +   M++R     V TYN+ +  +G+AG++ +ME  F  +  RG+  + +T+
Sbjct: 271 GRLDDMERLFAAMERR-GDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTW 329

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            + + AY++     +   ++ ++ ++    D      +++A      VE++  +  +M +
Sbjct: 330 TARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRSMHK 389

Query: 305 R 305
           +
Sbjct: 390 K 390



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 149/317 (47%), Gaps = 3/317 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  E+A  +++ M  +  + + + +T +++ YG++     +    N+MKS+  CKP
Sbjct: 57  LLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIG-CKP 115

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY+ L+ +  +    +  E++  EM   G E     YN +++ Y +A   +     F
Sbjct: 116 NICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF 175

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M +  GC PD  + N ++ AYG +G  E  E  + E    G+   +++  +L  ++ R
Sbjct: 176 SLM-QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHAR 234

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G   +   VM  + K    P     N ++  + +AG ++ ME  F  M+ RG   +  T
Sbjct: 235 SGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRG-DADVGT 293

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y   V+AY +AG + ++++    V    +  D   +   + AY +  +  +   +   M 
Sbjct: 294 YNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVGMVEEMV 353

Query: 304 ERHCVPDNITFATMIQA 320
           +  C PD  T   ++ A
Sbjct: 354 DAGCYPDAGTARVLLAA 370



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 152/302 (50%), Gaps = 3/302 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G+ P+  VY A +    ++   ++A      MK    C+ +  T++++I    K  
Sbjct: 38  MREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKR-ERCRANTETFTLMINVYGKAK 96

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +     K+  EM  +G + +  TY  +++ + +    E+ E  F  M ++G   PD++  
Sbjct: 97  QPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGH-EPDVYAY 155

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N+++ AY  +G  +   + ++    MG + D  + NIL  +YGRAG+++   +V + +++
Sbjct: 156 NALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQ 215

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R   PT+ ++ +++    ++G+  + EE   ++   G+ P++    ++++AY++AG +  
Sbjct: 216 RGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDD 275

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           ++ +   +E      D   +N  ++AYG+AG V +M   F  +  R    D +T+   + 
Sbjct: 276 MERLFAAMERRGDA-DVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMG 334

Query: 320 AY 321
           AY
Sbjct: 335 AY 336



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 128/275 (46%), Gaps = 1/275 (0%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           + C P   TY++L+++          E +++EM   GI  +A  YN  +DG  KA+  E+
Sbjct: 6   AQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEK 65

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               +  M +   C  +  T   MI+ YG +       K +NE   +G K +I T   L 
Sbjct: 66  AVEVYQRM-KRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALV 124

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            ++ R G+ +K   V + MQ+    P V  YN ++E + +AG  +   E F  M+H G +
Sbjct: 125 NAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCE 184

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+  +Y  LV AY +AGL    +++  +++   +         +++A+ ++G+  +  E+
Sbjct: 185 PDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEV 244

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
              + +    PD      M+ AY   G  +  + L
Sbjct: 245 MAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERL 279



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 64/134 (47%)

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT  TY +++  +  AG + + E    +M+  G+ PN+  Y + +    KA    K   +
Sbjct: 10  PTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEV 69

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
            ++++      +T  F  +I+ YG+A       ++F  MK   C P+  T+  ++ A+  
Sbjct: 70  YQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAR 129

Query: 324 LGMTEAAQNLENKM 337
            G+ E A+ +  +M
Sbjct: 130 EGLCEKAEEVFEEM 143


>gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g39620, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2453; Flags: Precursor
 gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana]
 gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana]
 gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana]
 gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 563

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 155/325 (47%), Gaps = 5/325 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G +P   VY AL++A+     ++  L++    ++ MK +
Sbjct: 142 VMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGI 201

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P+V TY+IL+++  +  + D +  +  ++    +     T+N ++D YGK    +E
Sbjct: 202 ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKE 261

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           ME+  + M  S  C PDI T N +I +YG     EKME+ +        K  + T N + 
Sbjct: 262 MEAVLTRM-RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMI 320

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A M DK   V   M    + P+ +TY  +I  +G  G + +  E F+++      
Sbjct: 321 INYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRV 380

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
             + T  +++  Y + GL ++ D +        V  D   +  +  AY +A   E++  L
Sbjct: 381 LKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQIL 440

Query: 299 FLTMKERHCVPDNITFATMIQAYNA 323
              M++   VP+   F   ++ + +
Sbjct: 441 MKKMEKDGIVPNKRFFLEALEVFGS 465



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 151/318 (47%), Gaps = 11/318 (3%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P   VY+ L+S  G+ G    A    ++MK+ S C+PD   Y+ LI +    H  D  + 
Sbjct: 131 PDNGVYSKLISVMGKKGQTRMAMWLFSEMKN-SGCRPDASVYNALITA--HLHTRDKAKA 187

Query: 87  ILAEMSYL----GIE-C--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +     YL    GIE C  + VTYN ++  + ++ K +++ + F  + +     PD++T 
Sbjct: 188 LEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDL-DMSPVSPDVYTF 246

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N ++ AYG +G I++ME           K DI T N+L  SYG+   ++KM      + +
Sbjct: 247 NGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMR 306

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               PT+ T+N +I  +GKA  I+K E  FKKM      P+ ITY  ++  Y   G + +
Sbjct: 307 SKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSR 366

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              I  +V  SD +L     N ++  Y + G   +  +LF         PD  T+  + +
Sbjct: 367 AREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYK 426

Query: 320 AYNALGMTEAAQNLENKM 337
           AY    M E  Q L  KM
Sbjct: 427 AYTKADMKEQVQILMKKM 444



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 41/187 (21%)

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           +L +  G++  + +   V  +MQK R++ P    Y+ +I   GK G        F +MK+
Sbjct: 102 LLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKN 161

Query: 235 RGMK----------------------------------------PNSITYCSLVSAYSKA 254
            G +                                        PN +TY  L+ A++++
Sbjct: 162 SGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQS 221

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G + +V+++ + ++ S V  D   FN ++ AYG+ G +++M  +   M+   C PD ITF
Sbjct: 222 GKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITF 281

Query: 315 ATMIQAY 321
             +I +Y
Sbjct: 282 NVLIDSY 288


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 165/329 (50%), Gaps = 3/329 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+    E+ S +F+ M S G+  SV  YTAL++AYG++G  + +   +  MK      
Sbjct: 157 LLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKR-ERVS 215

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P++ TY+ +I +C +    ++ +  + AEM + G++   VTYNT++         +E E 
Sbjct: 216 PNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEM 275

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M+E GG  P+I T + ++  +G  G +EK+     E    G   DI + N+L +++
Sbjct: 276 VFKTMIE-GGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAH 334

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G   +   V   MQ     P   TY+I++  +GK G  + + E F +MK    +P++
Sbjct: 335 AKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDA 394

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY  L+  + + G   +V ++   + + ++  +   +  ++ A G+ G  E   ++   
Sbjct: 395 TTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFH 454

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAA 330
           M  +  VP +  ++ +I+AY    + + A
Sbjct: 455 MNGKGIVPSSKAYSGLIEAYGQAALYDEA 483



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 166/346 (47%), Gaps = 2/346 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK  + E+ ++L + M S+G  P +  Y  L+ A+ + G + EA      M++ + C P
Sbjct: 299 FGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQA-AGCVP 357

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TYSIL+    K  R+D + ++  +M     E  A TYN +I  +G+   F+E+ + F
Sbjct: 358 NASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLF 417

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             +V+     P++ T   ++ A G  G  E  +K     N  G+    +  + L ++YG+
Sbjct: 418 HDLVDEN-IDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQ 476

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A +YD+     + M +     T+ TYN +I TF + G  ++ E    +M+  G+  N+ +
Sbjct: 477 AALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKS 536

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           +  ++  Y ++G   +      ++E     LD      ++  Y  AG V++  E F+ +K
Sbjct: 537 FSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIK 596

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
               +P  + +  M+  Y   G  + A  L ++MI  + +S  ++I
Sbjct: 597 ASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVI 642



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 161/321 (50%), Gaps = 2/321 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A ++F+ M+  G+ P +  Y+ +V  +G+ G L++    + +M+S     PD+ +Y++
Sbjct: 271 DEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMES-EGYLPDISSYNV 329

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI++  K         +  +M   G   +A TY+ +++ YGK  +++++   F  M ES 
Sbjct: 330 LIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESS 389

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T N +I  +G  G  +++   +++     +  +++T   L  + G+ G+++  
Sbjct: 390 -AEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDA 448

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + ++  M  +   P+   Y+ +IE +G+A   ++    F  M   G K    TY SL+  
Sbjct: 449 KKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHT 508

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           +++ GL  + ++IL ++    +  +   F+ II  Y Q+G  E+  + F+ M++  C  D
Sbjct: 509 FARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELD 568

Query: 311 NITFATMIQAYNALGMTEAAQ 331
             T   ++  Y   G+ + ++
Sbjct: 569 EQTLEGVLGVYCFAGLVDESK 589



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 159/309 (51%), Gaps = 3/309 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+  +YT ++S  G+ GLL++     ++M S    +  V++Y+ LI +  +  +++   
Sbjct: 145 KPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIR-SVFSYTALINAYGRNGQYETSL 203

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           ++L  M    +  + +TYNT+I+   +    +E +   F+ M   G   PD+ T N+++S
Sbjct: 204 ELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEG-VQPDLVTYNTLLS 262

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A    G  ++ E  +      G+  +I T + + +++G+ G  +K+  ++  M+   + P
Sbjct: 263 ACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLP 322

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            + +YN++IE   K G I++  + FK+M+  G  PN+ TY  L++ Y K G    V  + 
Sbjct: 323 DISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELF 382

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            Q++ S    D   +N +I  +G+ G  +++  LF  + + +  P+  T+  ++ A    
Sbjct: 383 LQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKG 442

Query: 325 GMTEAAQNL 333
           G+ E A+ +
Sbjct: 443 GLHEDAKKI 451



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 145/299 (48%), Gaps = 2/299 (0%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           S++ ++ +   +   G    +      M+    CKP+ + Y+I+I    +    +   +I
Sbjct: 111 SLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEI 170

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             EM+  G+  S  +Y  +I+ YG+  ++E        M +     P+I T N++I+A  
Sbjct: 171 FDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERM-KRERVSPNILTYNTVINACA 229

Query: 148 NSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
               + E +   + E    GV+ D+ T N L  +    G+ D+   V   M +    P +
Sbjct: 230 RGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEI 289

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TY+ ++ETFGK G +EK+    K+M+  G  P+  +Y  L+ A++K G I +   + +Q
Sbjct: 290 TTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQ 349

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++ +  + +   ++ +++ YG+ G  + + ELFL MKE    PD  T+  +I+ +   G
Sbjct: 350 MQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGG 408



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 109/218 (50%), Gaps = 1/218 (0%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M     C P+      +IS  G  G +EK  + ++E    GV   + +   L  +YG
Sbjct: 135 FKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYG 194

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNS 241
           R G Y+    +++ M++    P ++TYN VI    +     E +   F +M+H G++P+ 
Sbjct: 195 RNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDL 254

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L+SA +  GL  + + + + +    ++ +   ++ I+  +G+ G +EK+  L   
Sbjct: 255 VTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKE 314

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M+    +PD  ++  +I+A+  LG  + A ++  +M A
Sbjct: 315 MESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQA 352


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 158/318 (49%), Gaps = 8/318 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   ASL+ E M+  G  P+V  Y  L++ + + G +DEA    N M   S C P
Sbjct: 112 LCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS-CSP 170

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV+TY+ILI    K  R     K+L EM   G E + +TYNT++D   K+ K+ +   + 
Sbjct: 171 DVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYID-AFNL 229

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKS 180
           + M+    C P  FT N MI  +   G   +++  Y  F LM   G   DI T NI+   
Sbjct: 230 AQMMLRRDCKPSHFTFNLMIDMFCKVG---QLDLAYELFQLMTDRGCLPDIYTYNIMISG 286

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             RA   D  R +++ M +    P VVTYN ++    KA  +++  E ++ +++ G   +
Sbjct: 287 ACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLD 346

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T  +L+    K+  +   + +LR++E +    D   +  +I  + +A  ++K    F 
Sbjct: 347 VVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFS 406

Query: 301 TMKERHCVPDNITFATMI 318
            M ++ CVP  IT++ +I
Sbjct: 407 EMLDKGCVPTVITYSIVI 424



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 153/332 (46%), Gaps = 3/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K +  +QA  L + M   G+ P   VY  ++     +G +D A     DM+    C P V
Sbjct: 45  KARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR--HCAPSV 102

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+IL+ +  K  R      IL +M   G   + VTYNT+I+G+ K    +E    F+ 
Sbjct: 103 ITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQ 162

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+E+  C PD+FT N +I  Y      +   K   E    G + +  T N L  S  ++G
Sbjct: 163 MLENS-CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSG 221

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            Y    ++   M +R   P+  T+N++I+ F K G ++   E F+ M  RG  P+  TY 
Sbjct: 222 KYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYN 281

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            ++S   +A  I     +L ++  +    D   +N I+S   +A  V++  E++  ++  
Sbjct: 282 IMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNG 341

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               D +T +T+I         + A+ L  +M
Sbjct: 342 GYFLDVVTCSTLIDGLCKSRRLDDAEKLLREM 373



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 2/222 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L ++ML    KPS   +  ++  + + G LD A+     M     C PD+YTY+I+I   
Sbjct: 229 LAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTD-RGCLPDIYTYNIMISGA 287

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            + +R D   ++L  M+  G     VTYN+I+ G  KA + +E    +  +  +GG   D
Sbjct: 288 CRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL-RNGGYFLD 346

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T +++I     S  ++  EK   E    G   D+    IL   + +A   DK  +   
Sbjct: 347 VVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFS 406

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            M  +   PTV+TY+IVI+   K+  +       K M  RG+
Sbjct: 407 EMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 119/275 (43%), Gaps = 3/275 (1%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C PD  TYS LI    K   F    ++L EM   GI      YNTII G     + +   
Sbjct: 29  CSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSAL 88

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +  M     C P + T   ++ A   S  I        +    G   ++ T N L   
Sbjct: 89  VHYRDMQRH--CAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLING 146

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + + G  D+   + + M +    P V TYNI+I+ + K    +   +  ++M   G +PN
Sbjct: 147 FCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPN 206

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ITY +L+ +  K+G  +   ++ + +   D       FN +I  + + G ++   ELF 
Sbjct: 207 FITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQ 266

Query: 301 TMKERHCVPDNITFATMIQ-AYNALGMTEAAQNLE 334
            M +R C+PD  T+  MI  A  A  + +A Q LE
Sbjct: 267 LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLE 301



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 101/235 (42%), Gaps = 2/235 (0%)

Query: 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
           N ++  + + KK +E    F   +  G C PD  T +++I+ +  + + ++  +  +E  
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHL-CGLCSPDSITYSTLINGFCKARDFQQAYRLLDEME 60

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
             G+       N + K     G  D        MQ R   P+V+TY I+++   K+  I 
Sbjct: 61  KRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RHCAPSVITYTILVDALCKSARIS 119

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
                 + M   G  PN +TY +L++ + K G + +   +  Q+  +    D   +N +I
Sbjct: 120 DASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILI 179

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             Y +    +   +L   M +  C P+ IT+ T++ +    G    A NL   M+
Sbjct: 180 DGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMML 234


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 162/316 (51%), Gaps = 4/316 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G C    +A  + + M  +G+ P +  +  ++SAY       +A S    MK  ++ +PD
Sbjct: 111 GSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKG-TNIRPD 169

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESS 122
             T +I+I    K  ++    +I + M     EC    VT+ +II  Y    + E+ ++ 
Sbjct: 170 TTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAV 229

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS M+ + G  P+I + N++ISAY + G  ++    ++E    G   D+ +   L  ++G
Sbjct: 230 FSTML-AEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFG 288

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R+    + R V D M++    P +V+YN +++ +G  G++ +  +  ++M+  G+ PN +
Sbjct: 289 RSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVV 348

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           + C+L++A  + G  + +DS+L   E   + L+T   N  I +Y   G+ EK   L+ +M
Sbjct: 349 SICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSM 408

Query: 303 KERHCVPDNITFATMI 318
           + +   PD++TF  +I
Sbjct: 409 ENKTTKPDSVTFTILI 424



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 155/314 (49%), Gaps = 2/314 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E    +F  ML++G+KP++  Y AL+SAY   G+  EAFS  ++MK    C PDV +Y
Sbjct: 222 QIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFC-PDVVSY 280

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + LI +  +  +     ++   M     + + V+YN ++D YG      +       M E
Sbjct: 281 TSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREM-E 339

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             G HP++ ++ ++++A G  G    ++   +   L G+  +    N    SY   G Y+
Sbjct: 340 QDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYE 399

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K  ++   M+ +   P  VT+ I+I    +    E+   +FK+M    +  +S  Y S++
Sbjct: 400 KAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMI 459

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
            AYSK G ++K +S+   ++ S    D   +  +I+AY  +   EK+  L+  M+  +  
Sbjct: 460 CAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQ 519

Query: 309 PDNITFATMIQAYN 322
            D+I  + +++A+N
Sbjct: 520 LDSIACSALMKAFN 533



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 143/334 (42%), Gaps = 38/334 (11%)

Query: 41  QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 100
           Q G ++      + MK+  +       Y+++I+   + +R D    +  EM     +   
Sbjct: 6   QIGSIEHCVQVFDWMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWRCKPDV 65

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
            TYN +I+ +G+A ++    +    M+ +    P   T N++I+A G+ GN  +  +   
Sbjct: 66  ETYNALINAHGRAGQWRWATNIMEDMLRAA-IPPSRSTFNNLINACGSCGNWREALRVCK 124

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI------E 214
           +    GV  D+ T NI+  +Y     Y K  S  + M+     P   T NIVI      +
Sbjct: 125 KMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVK 184

Query: 215 TFGKA-------------------------------GHIEKMEEYFKKMKHRGMKPNSIT 243
            +G+A                               G IE  +  F  M   G+KPN ++
Sbjct: 185 QYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVS 244

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+SAY+  G+  +  S+  +++ S    D   +  +IS +G++    +  E+F  MK
Sbjct: 245 YNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMK 304

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              C P+ +++  ++ AY + G    A ++  +M
Sbjct: 305 RNKCKPNLVSYNALMDAYGSNGYLPQAVDILREM 338



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+  N MI  +     I++    + E      K D++T N L  ++GRAG +    ++M
Sbjct: 31  DIY--NMMIRLHARHNRIDQARGLFFEMQKWRCKPDVETYNALINAHGRAGQWRWATNIM 88

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + M +    P+  T+N +I   G  G+  +     KKM   G+ P+ +T+  ++SAY   
Sbjct: 89  EDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSG 148

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 312
               K  S    ++ +++  DT   N +I    +     +  E+F +M+E+   C PD +
Sbjct: 149 AQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVV 208

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           TF ++I  Y+  G  E  + + + M+A
Sbjct: 209 TFTSIIHLYSVRGQIEDCKAVFSTMLA 235



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 152/337 (45%), Gaps = 2/337 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            G+ +QP +A  +F++M  +  KP++  Y AL+ AYG +G L +A   + +M+      P
Sbjct: 287 FGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQ-DGIHP 345

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V +   L+ +C +F +   I+ +L+     GI  + +  N+ I  Y    ++E+  + +
Sbjct: 346 NVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLY 405

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            +M E+    PD  T   +IS        E+   ++ E   + +    +  + +  +Y +
Sbjct: 406 RSM-ENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSK 464

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   K  S+ + ++     P +VTY  +I  +  +   EK+   +++M+   ++ +SI 
Sbjct: 465 QGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIA 524

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
             +L+ A++K      V  +   ++   +  +   F  ++SA     D  K  +L   M+
Sbjct: 525 CSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWRKATDLINLME 584

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
               +    T   ++Q     G TE    L  + +A+
Sbjct: 585 PSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVAL 621



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 151/384 (39%), Gaps = 75/384 (19%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSA---YGQSGLLDEAFST--------------- 51
           P+   +L E M  DG+ P+V     L++A   +GQ   +D   S                
Sbjct: 329 PQAVDILRE-MEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNS 387

Query: 52  --------------INDMKSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 95
                         IN  +S+ +   KPD  T++ILI  C +  +++       EM  L 
Sbjct: 388 AIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLR 447

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
           I  S+  Y+++I  Y K  +  + ES F+++ +  GC PD+ T  +MI+AY  S   EK+
Sbjct: 448 IPLSSEIYSSMICAYSKQGQLVKAESLFNSL-KGSGCCPDLVTYTAMINAYSASEMWEKV 506

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGM----------------------------- 186
              Y E     ++ D    + L K++ +                                
Sbjct: 507 CALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSA 566

Query: 187 ------YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                 + K   +++ M+  F   ++ T N +++  GK+G  E M + F +    G   N
Sbjct: 567 CSILRDWRKATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVN 626

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY  L+     AG   K   +L+ + ++ +      +N I+      GD E       
Sbjct: 627 INTYSILLKNLLSAGKWRKYIEVLQWMNDAGIQPSHAMYNNILFFAQHCGDAEYAA---- 682

Query: 301 TMKERHCVPDNITFATMIQAYNAL 324
            +KER  +   I+  +++ A N L
Sbjct: 683 VIKERVGMRLCISLISVVLARNNL 706


>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39980, chloroplastic; Flags: Precursor
 gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 678

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 164/359 (45%), Gaps = 39/359 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + KQ + A  LF+ M    L P    Y+ L++++G+ G+ D A S +  M+       D+
Sbjct: 167 RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQ-DRVSGDL 225

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             YS LI+   +   +     I + +   GI    V YN++I+ YGKAK F E       
Sbjct: 226 VLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKE 285

Query: 126 MVESG----------------------------------GCHPDIFTLNSMISAYGNSGN 151
           M E+G                                   C  D+ T N MI  YG    
Sbjct: 286 MNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDM 345

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++ ++ +     M ++ ++ + N + + YG A ++ +   +   MQ++     VVTYN 
Sbjct: 346 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT 405

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ +GK    EK     ++M+ RG++PN+ITY +++S + KAG + +  ++ +++ +S 
Sbjct: 406 MIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSG 465

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           V +D   +  +I AY + G +     L   +K    +PDNI   T I      G TE A
Sbjct: 466 VEIDQVLYQTMIVAYERVGLMGHAKRLLHELK----LPDNIPRETAITILAKAGRTEEA 520



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 158/356 (44%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P +  Y ++++ YG++ L  EA   I +M   +   P+  +YS L+   
Sbjct: 247 IFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNE-AGVLPNTVSYSTLLSVY 305

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            + H+F     + AEM  +       T N +ID YG+    +E +  F ++       P+
Sbjct: 306 VENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSL-RKMDIEPN 364

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG +   E   +  + F LM    ++ ++ T N + K YG+   ++K  +
Sbjct: 365 VVSYNTILRVYGEA---ELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATN 421

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GKAG +++    F+K++  G++ + + Y +++ AY 
Sbjct: 422 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYE 481

Query: 253 KAGLIMKVDSIL-------------------------------RQVENSDVILDTPFFNC 281
           + GL+     +L                               RQ   S  + D   F C
Sbjct: 482 RVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGC 541

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I+ Y +      + E+F  M+     PD+   A ++ AY      E A  +  +M
Sbjct: 542 MINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREM 597



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 143/311 (45%), Gaps = 2/311 (0%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           PSV  Y  ++    ++   D A    ++M+  +   PD YTYS LI S  K   FD    
Sbjct: 153 PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRA-LAPDRYTYSTLITSFGKEGMFDSALS 211

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
            L +M    +    V Y+ +I+   +   + +  S FS +  SG   PD+   NSMI+ Y
Sbjct: 212 WLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSG-ITPDLVAYNSMINVY 270

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           G +    +      E N  GV  +  + + L   Y     + +  SV   M++      +
Sbjct: 271 GKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDL 330

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            T NI+I+ +G+   +++ +  F  ++   ++PN ++Y +++  Y +A L  +   + R 
Sbjct: 331 TTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRL 390

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           ++  D+  +   +N +I  YG+  + EK   L   M+ R   P+ IT++T+I  +   G 
Sbjct: 391 MQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGK 450

Query: 327 TEAAQNLENKM 337
            + A  L  K+
Sbjct: 451 LDRAATLFQKL 461



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 144/334 (43%), Gaps = 37/334 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  +    ++P+V  Y  ++  YG++ L  EA      M+   D + +
Sbjct: 341 GQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQR-KDIEQN 399

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ +IK   K    +    ++ EM   GIE +A+TY+TII  +GKA K +   + F 
Sbjct: 400 VVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQ 459

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-------------------- 164
            +  S G   D     +MI AY   G +   ++  +E  L                    
Sbjct: 460 KL-RSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTE 518

Query: 165 -----------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                       G   DI     +   Y R   Y  +  V + M+   +FP      +V+
Sbjct: 519 EATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVL 578

Query: 214 ETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
             +GK    EK +  +++M+  G + P+ + +  ++S YS       V+S+ +++E SD 
Sbjct: 579 NAYGKQREFEKADTVYREMQEEGCVFPDEVHF-QMLSLYSSKKDFEMVESLFQRLE-SDP 636

Query: 273 ILDTPFFNCIISA-YGQAGDVEKMGELFLTMKER 305
            +++   + +++A Y +A  +     +   M+ER
Sbjct: 637 NVNSKELHLVVAALYERADKLNDASRVMNRMRER 670



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 83/178 (46%), Gaps = 2/178 (1%)

Query: 162 FNLMGVKADIQ-TLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKA 219
           F+L+    D Q ++  +     R   + +  +++D++ +   + P+V  YN+V+    +A
Sbjct: 109 FSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRA 168

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
              +     F +M+ R + P+  TY +L++++ K G+     S L+++E   V  D   +
Sbjct: 169 KQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLY 228

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + +I    +  D  K   +F  +K     PD + + +MI  Y    +   A+ L  +M
Sbjct: 229 SNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEM 286


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 165/329 (50%), Gaps = 3/329 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+    E+ S +F+ M S G+  SV  YTAL++AYG++G  + +   +  MK      
Sbjct: 157 LLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKR-ERVS 215

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P++ TY+ +I +C +    ++ +  + AEM + G++   VTYNT++         +E E 
Sbjct: 216 PNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEM 275

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M+E GG  P+I T + ++  +G  G +EK+     E    G   DI + N+L +++
Sbjct: 276 VFKTMIE-GGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAH 334

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G   +   V   MQ     P   TY+I++  +GK G  + + E F +MK    +P++
Sbjct: 335 AKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDA 394

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY  L+  + + G   +V ++   + + ++  +   +  ++ A G+ G  E   ++   
Sbjct: 395 TTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFH 454

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAA 330
           M  +  VP +  ++ +I+AY    + + A
Sbjct: 455 MNGKGIVPSSKAYSGLIEAYGQAALYDEA 483



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 166/346 (47%), Gaps = 2/346 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK  + E+ ++L + M S+G  P +  Y  L+ A+ + G + EA      M++ + C P
Sbjct: 299 FGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQA-AGCVP 357

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TYSIL+    K  R+D + ++  +M     E  A TYN +I  +G+   F+E+ + F
Sbjct: 358 NASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLF 417

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             +V+     P++ T   ++ A G  G  E  +K     N  G+    +  + L ++YG+
Sbjct: 418 HDLVDEN-IDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQ 476

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A +YD+     + M +     T+ TYN +I TF + G  ++ E    +M+  G+  N+ +
Sbjct: 477 AALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKS 536

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           +  ++  Y ++G   +      ++E     LD      ++  Y  AG V++  E F+ +K
Sbjct: 537 FSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIK 596

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
               +P  + +  M+  Y   G  + A  L ++MI  + +S  ++I
Sbjct: 597 ASGILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVI 642



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 161/321 (50%), Gaps = 2/321 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A ++F+ M+  G+ P +  Y+ +V  +G+ G L++    + +M+S     PD+ +Y++
Sbjct: 271 DEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMES-EGYLPDISSYNV 329

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI++  K         +  +M   G   +A TY+ +++ YGK  +++++   F  M ES 
Sbjct: 330 LIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESS 389

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T N +I  +G  G  +++   +++     +  +++T   L  + G+ G+++  
Sbjct: 390 -AEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDA 448

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + ++  M  +   P+   Y+ +IE +G+A   ++    F  M   G K    TY SL+  
Sbjct: 449 KKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHT 508

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           +++ GL  + ++IL ++    +  +   F+ II  Y Q+G  E+  + F+ M++  C  D
Sbjct: 509 FARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELD 568

Query: 311 NITFATMIQAYNALGMTEAAQ 331
             T   ++  Y   G+ + ++
Sbjct: 569 EQTLEGVLGVYCFAGLVDESK 589



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 159/309 (51%), Gaps = 3/309 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+  +YT ++S  G+ GLL++     ++M S    +  V++Y+ LI +  +  +++   
Sbjct: 145 KPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIR-SVFSYTALINAYGRNGQYETSL 203

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           ++L  M    +  + +TYNT+I+   +    +E +   F+ M   G   PD+ T N+++S
Sbjct: 204 ELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEG-VQPDLVTYNTLLS 262

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A    G  ++ E  +      G+  +I T + + +++G+ G  +K+  ++  M+   + P
Sbjct: 263 ACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLP 322

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            + +YN++IE   K G I++  + FK+M+  G  PN+ TY  L++ Y K G    V  + 
Sbjct: 323 DISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELF 382

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            Q++ S    D   +N +I  +G+ G  +++  LF  + + +  P+  T+  ++ A    
Sbjct: 383 LQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKG 442

Query: 325 GMTEAAQNL 333
           G+ E A+ +
Sbjct: 443 GLHEDAKKI 451



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 145/299 (48%), Gaps = 2/299 (0%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           S++ ++ +   +   G    +      M+    CKP+ + Y+I+I    +    +   +I
Sbjct: 111 SLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEI 170

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             EM+  G+  S  +Y  +I+ YG+  ++E        M +     P+I T N++I+A  
Sbjct: 171 FDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERM-KRERVSPNILTYNTVINACA 229

Query: 148 NSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
               + E +   + E    GV+ D+ T N L  +    G+ D+   V   M +    P +
Sbjct: 230 RGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEI 289

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TY+ ++ETFGK G +EK+    K+M+  G  P+  +Y  L+ A++K G I +   + +Q
Sbjct: 290 TTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQ 349

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++ +  + +   ++ +++ YG+ G  + + ELFL MKE    PD  T+  +I+ +   G
Sbjct: 350 MQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGG 408



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 109/218 (50%), Gaps = 1/218 (0%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M     C P+      +IS  G  G +EK  + ++E    GV   + +   L  +YG
Sbjct: 135 FKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYG 194

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNS 241
           R G Y+    +++ M++    P ++TYN VI    +     E +   F +M+H G++P+ 
Sbjct: 195 RNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDL 254

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L+SA +  GL  + + + + +    ++ +   ++ I+  +G+ G +EK+  L   
Sbjct: 255 VTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKE 314

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M+    +PD  ++  +I+A+  LG  + A ++  +M A
Sbjct: 315 MESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQA 352


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 155/309 (50%), Gaps = 4/309 (1%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--LIEKIL 88
            Y AL+ A  ++  L++A + ++ M+     + D   YS++I+S T+ ++ D  L++K+ 
Sbjct: 211 TYNALIGACARNNDLEKALNLMSRMRQ-DGFQSDFINYSLIIQSLTRTNKIDIPLLQKLY 269

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            E+    IE   +  N II G+ KA         F +MV++ G +P   T  ++ISA GN
Sbjct: 270 EEIESDKIELDGLLLNDIILGFAKAGD-PNRALYFLSMVQASGLNPKTSTFVAVISALGN 328

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G  E+ E  + E    G+K  I+  N L K Y R G   +  S++  M+K    P   T
Sbjct: 329 HGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHT 388

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y ++++ +   G  E      K+M+ R ++PN+  +  ++++Y   G   K   +LR+++
Sbjct: 389 YGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMK 448

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
           NS+V  D  F+N +I  +G+   ++   E +  M      PD +T+ T+I  +   G  +
Sbjct: 449 NSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHD 508

Query: 329 AAQNLENKM 337
            A  L  +M
Sbjct: 509 RAAELFEEM 517



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 154/320 (48%), Gaps = 6/320 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG   + E+A  +FE M   GLKP +  + AL+  Y + G L EA S I++M+  S   P
Sbjct: 326 LGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEK-SGLSP 384

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +TY +L+ +     R++    +L +M    ++ +   ++ I+  Y   +   E + +F
Sbjct: 385 DEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASY---RDRGEWQKTF 441

Query: 124 SAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             + E  +    PD    N MI  +G    ++   + Y+     G++ D+ T N L   +
Sbjct: 442 EVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCH 501

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G +D+   + + MQ+R + P   TYNI+I + G+    ++++    KM+ +G+ PN 
Sbjct: 502 RKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNV 561

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +LV  Y  +G        L  ++++ +      +N +I+A+ Q G  E+    +  
Sbjct: 562 VTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRV 621

Query: 302 MKERHCVPDNITFATMIQAY 321
           M      P  +   ++I A+
Sbjct: 622 MISDGLRPSLLALNSLINAF 641



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 152/340 (44%), Gaps = 4/340 (1%)

Query: 2   VMLG--KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++LG  K   P +A     ++ + GL P    + A++SA G  G  +EA +   +MK   
Sbjct: 287 IILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKE-G 345

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KP +  ++ L+K   +       E I++EM   G+     TY  ++D Y    ++E  
Sbjct: 346 GLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESA 405

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 M E+    P+ F  + ++++Y + G  +K  +   E     VK D    N++  
Sbjct: 406 RHLLKQM-EARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMID 464

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           ++G+    D      D M      P VVT+N +I+   K G+ ++  E F++M+ RG  P
Sbjct: 465 TFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLP 524

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
              TY  ++++  +     +V  +L ++++  ++ +   +  ++  YG +G      +  
Sbjct: 525 CPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCL 584

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             MK     P    +  +I A+   G++E A N    MI+
Sbjct: 585 EAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMIS 624


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 169/340 (49%), Gaps = 7/340 (2%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  Q +QA   FE M  + + P+   Y  +V+   ++ L  +A+  + +M+  
Sbjct: 12  IIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDG 70

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFE 117
               PD+ TYS +I    K    D   +IL EM +  GI    VTY +++DG  +  K +
Sbjct: 71  KSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMD 130

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE-FNLMGVKADIQTLNI 176
                   M +  G  PD FT +++I+ + N+  +++  K Y E       K D+ T   
Sbjct: 131 RACEMVREM-KLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTA 189

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   + ++G  +K   ++  M+ R   P VVTY+ ++    KAG +++  + F++M  +G
Sbjct: 190 LIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKG 249

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             PN +TY +L+     A  +     ++ ++  +    DT  +N ++  Y + G +E+  
Sbjct: 250 CVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAK 309

Query: 297 ELFLTMKERHCVPDNITFATMIQAY-NALGMTEAAQNLEN 335
           +LF  M  + C+PD IT+  +++ + NA  + EA   LEN
Sbjct: 310 QLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLEN 349



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 161/345 (46%), Gaps = 8/345 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVM--LSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           +V+ G CK     S  +EV+  + DG  + P +  Y+ +++ + + G +D A   + +M 
Sbjct: 46  VVVNGLCKA-RLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMV 104

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           +     PDV TY+ ++    +  + D   +++ EM   G+E    T++ +I G+  A+K 
Sbjct: 105 TRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKV 164

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +E    +  ++ S    PD+ T  ++I  +  SGN+EK  K            ++ T + 
Sbjct: 165 DEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSS 224

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L     +AG  D+   +   M  +   P VVTY  +I     A  ++       +M    
Sbjct: 225 LLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC 284

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             P++++Y +L+  Y + G I +   + +++     + D   + C++  +  A  +E+  
Sbjct: 285 CPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEAR 344

Query: 297 ELFLTMKERHCV-PDNITFATMIQAYN-ALGMTEAAQNLENKMIA 339
            L   MK    + PD +T++ ++  Y+ A    EAA+ ++ +MIA
Sbjct: 345 FLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQ-EMIA 388



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 164/381 (43%), Gaps = 48/381 (12%)

Query: 2   VMLGKCKQPE---QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V+ G CKQ E      +L E++  DG+ P V  YT++V    + G +D A   + +MK +
Sbjct: 83  VINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMK-L 141

Query: 59  SDCKPDVYTYSILIKSCTKFHRFD----LIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
              +PD +T+S LI       + D    L ++IL   S+   +   VTY  +IDG+ K+ 
Sbjct: 142 KGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSW---KPDVVTYTALIDGFCKSG 198

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
             E+       M E   C P++ T +S++     +G++++    +      G   ++ T 
Sbjct: 199 NLEKAMKMLGVM-EGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTY 257

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
             L      A   D  R +MD M      P  V+YN +++ + + G IE+ ++ FK+M  
Sbjct: 258 TTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMAT 317

Query: 235 R------------------------------------GMKPNSITYCSLVSAYSKAGLIM 258
           +                                    G+ P+ +TY  +V+ YS+A   +
Sbjct: 318 KSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFV 377

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +    ++++   +V  +   ++ +I    +AG V+   E+   M  +   P   TF ++I
Sbjct: 378 EAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVI 437

Query: 319 QAYNALGMTEAAQNLENKMIA 339
            A   LG  + A  L   M A
Sbjct: 438 GALCRLGDMDEAWKLLVAMAA 458



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 148/342 (43%), Gaps = 10/342 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  QA  LF  M S G  P+V  YT L+     +  +D A   +++M +   C 
Sbjct: 228 GLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC-CP 286

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  +Y+ L+    +  R +  +++  EM+        +TY  ++ G+  A + EE    
Sbjct: 287 PDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFL 346

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M  + G  PD+ T + +++ Y  +    +  ++  E     V  +  T + L     
Sbjct: 347 LENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLC 406

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG  D    V+  M  +   P+V T+N VI    + G +++  +    M   G++P  +
Sbjct: 407 KAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMV 466

Query: 243 TYCSLVSAYSKAG---LIMKVDSILRQVENSDV----ILDTPFFNCIISAYGQAGDVEKM 295
           TY +L+  +S+ G   +  ++  ++R+          ++    F+ +I    +A +++K 
Sbjct: 467 TYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKA 526

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   ++ R C P       ++      G TE A  L N +
Sbjct: 527 MAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSI 568



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 123/250 (49%), Gaps = 13/250 (5%)

Query: 96  IEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153
           +EC  + VT+  IIDG+ KA + ++  + F  M E     P+  T N +++    +    
Sbjct: 1   MECQPTVVTWTIIIDGFCKANQLKQALACFEKMREFVA--PNERTYNVVVNGLCKARLTS 58

Query: 154 KMEKWYNEF-NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNI 211
           K  +   E  +   V  D+ T + +   + + G  D+   ++  M  R    P VVTY  
Sbjct: 59  KAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTS 118

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ----V 267
           V++   + G +++  E  ++MK +G++P+  T+ +L++ +  A    KVD  L+     +
Sbjct: 119 VVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNA---RKVDEALKLYKEIL 175

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
            +S    D   +  +I  + ++G++EK  ++   M+ R CVP+ +T+++++      G  
Sbjct: 176 TSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDL 235

Query: 328 EAAQNLENKM 337
           + A +L  +M
Sbjct: 236 DQALDLFRRM 245


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 152/330 (46%), Gaps = 2/330 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +C++ ++A  L + M+     P   VY  L++   + G +D A + +  M   S C P
Sbjct: 102 LCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERS-CVP 160

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TY+ LI  C + +  D   K++ +M   G+    V YN +++G  K  + EE+    
Sbjct: 161 DVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLL 220

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MVE+G   PD F+ N++++    SG  E+  K   +        D+ T N L   + +
Sbjct: 221 EEMVEAGR-EPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCK 279

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               D+   +++ M  R   PTV+TY  +I  F +A  +       + M   G+ P+ +T
Sbjct: 280 VSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVT 339

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+    KAG + +   +L  +   D   D   ++ +++   + G V+    L   M 
Sbjct: 340 YNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMML 399

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ER C P+ +TF TMI  +   G  +    +
Sbjct: 400 ERGCQPNLVTFNTMIDGFCKAGKVDEGHKV 429



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 145/318 (45%), Gaps = 14/318 (4%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + E M   G+ P +  Y  L+    ++G L+EA   +  M    DC PDV TYSIL+   
Sbjct: 324 VMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVE-KDCAPDVVTYSILVNGL 382

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  + D    +L  M   G + + VT+NT+IDG+ KA K +E       M E   C PD
Sbjct: 383 CKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVS-CTPD 441

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T +++I  Y       K  +  + F ++G+  D  + + + +     G  ++ + VMD
Sbjct: 442 VVTYSTLIDGYC------KANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMD 495

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK---MKHRGMKPNSITYCSLVSAYS 252
            M K+   PT   Y ++I   G    +E+ +E  K    M  RG +PN  TY  L++   
Sbjct: 496 LMTKQGCPPTSSHYALII---GGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLC 552

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           K   +    ++L  +     + D   +  +I  + +   ++   + F TM++  C PD +
Sbjct: 553 KTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKL 612

Query: 313 TFATMIQAYNALGMTEAA 330
            +  +I  +   G  E A
Sbjct: 613 AYNILISGFCQSGNVEKA 630



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 147/353 (41%), Gaps = 37/353 (10%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML+    P V  +  ++ AY Q G LD A S     +    C P  +TY ILI    +  
Sbjct: 50  MLARRFSPDVITHNTILKAYCQIGDLDRALS---HFRGKMWCSPTAFTYCILIHGLCQCQ 106

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES---------- 129
           R D   ++L EM        A  YN +I G  K  K +   +    M+E           
Sbjct: 107 RIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYT 166

Query: 130 ----GGCH--------------------PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
               G C                     PD    N++++       +E++ K   E    
Sbjct: 167 SLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEA 226

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G + D  + N +      +G Y++   +++ M ++   P VVTYN +++ F K   +++ 
Sbjct: 227 GREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEA 286

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           E   + M  R   P  ITY +L+  +S+A  +     ++  +  + +  D   +NC++  
Sbjct: 287 ERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDG 346

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +AG +E+  EL   M E+ C PD +T++ ++     LG  + A+ L   M+
Sbjct: 347 LCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMML 399



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 152/327 (46%), Gaps = 8/327 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L E M   GL P    Y AL++   +   L+E    + +M      +PD ++Y+ 
Sbjct: 179 DEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGR-EPDTFSYNT 237

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    +  +++   KIL +M         VTYN+++DG+ K  K +E E     MV   
Sbjct: 238 VVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMV-GR 296

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P + T  ++I  +  +  +    +   +    G+  D+ T N L     +AG  ++ 
Sbjct: 297 RCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEA 356

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M ++   P VVTY+I++    K G ++      + M  RG +PN +T+ +++  
Sbjct: 357 HELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDG 416

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + KAG + +   +L  ++      D   ++ +I  Y +A    +M + F  +      PD
Sbjct: 417 FCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKAN---RMQDAFAILGIS---PD 470

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
             ++++M++   + G  E AQ + + M
Sbjct: 471 KASYSSMLEGLCSTGKVEEAQEVMDLM 497



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 142/321 (44%), Gaps = 51/321 (15%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + + A LL E+ML  G +P++  +  ++  + ++G +DE    +  MK VS C 
Sbjct: 381 GLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVS-CT 439

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TYS LI    K +R           + LGI     +Y+++++G     K EE +  
Sbjct: 440 PDVVTYSTLIDGYCKANRMQ------DAFAILGISPDKASYSSMLEGLCSTGKVEEAQEV 493

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTK 179
              M +  GC P   T +      G   ++E+ ++      +M   G + ++ T +IL  
Sbjct: 494 MDLMTKQ-GCPP---TSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILIN 549

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              +    +   +V+D M ++   P V TY  +I+ F K   ++   + FK M+  G +P
Sbjct: 550 GLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEP 609

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + + Y                                   N +IS + Q+G+VEK  E+ 
Sbjct: 610 DKLAY-----------------------------------NILISGFCQSGNVEKAIEVM 634

Query: 300 LTMKERHCVPDNITFATMIQA 320
             M E+ C PD  T+ +++++
Sbjct: 635 QLMLEKGCNPDAATYFSLMRS 655



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 124/280 (44%), Gaps = 3/280 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           KP   TY  LI   ++     ++ +I  EM         +T+NTI+  Y +    +   S
Sbjct: 21  KPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALS 80

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F   +    C P  FT   +I        I++  +  +E        D    N L    
Sbjct: 81  HFRGKM---WCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGL 137

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G  D  R+V+  M +R   P V+TY  +I    +   +++  +  +KMK  G+ P++
Sbjct: 138 CKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDT 197

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           + Y +L++   K   + +V  +L ++  +    DT  +N +++   ++G  E+ G++   
Sbjct: 198 VAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEK 257

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           M E+ C PD +T+ +++  +  +   + A+ L   M+  +
Sbjct: 258 MIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRR 297



 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K+ E A  + +VML  G  P V  YT+L+  + +   +D A+     M+  S C+P
Sbjct: 551 LCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRD-SGCEP 609

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYL---GIECSAVTYNTII 107
           D   Y+ILI   + F +   +EK +  M  +   G    A TY +++
Sbjct: 610 DKLAYNILI---SGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLM 653



 Score = 38.1 bits (87), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 10/115 (8%)

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKV-DSILRQVENSDVILDTPFFNCII 283
           +F++      KP++ TY +L++ +S+AG   +++++ + +L +  + DVI      N I+
Sbjct: 11  FFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVIT----HNTIL 66

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            AY Q GD+++    F    +  C P   T+  +I         + A  L ++MI
Sbjct: 67  KAYCQIGDLDRALSHF--RGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMI 119


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 164/345 (47%), Gaps = 37/345 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +  ++L +++ S G+ P V  Y +L+  Y + GL+  A   + DM++   CKP+VY+Y+I
Sbjct: 365 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRN-KGCKPNVYSYTI 423

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  + D    +L EMS  G++ + V +N +I  + K  +  E    F  M   G
Sbjct: 424 LVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 483

Query: 131 GCHPDIFTLNSMIS-----------------------------------AYGNSGNIEKM 155
            C PD++T NS+IS                                   A+   G I++ 
Sbjct: 484 -CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 542

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            K  NE    G   D  T N L K   RAG  DK RS+ + M +    P+ ++ NI+I  
Sbjct: 543 RKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILING 602

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             ++G +E+  E+ K+M  RG  P+ +T+ SL++   +AG I    ++ R+++   +  D
Sbjct: 603 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 662

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           T  +N ++S   + G V     L     E   VP++ T++ ++Q+
Sbjct: 663 TVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQS 707



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 159/335 (47%), Gaps = 5/335 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L KC +  +A  L E M   G  P  + +  ++    +   ++EA   +N M  +    P
Sbjct: 256 LSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML-IRGFTP 314

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY  L+    K  R D  + +   +     + ++V +NT+I G+    + ++ ++  
Sbjct: 315 DDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPTSVIFNTLIHGFVTHGRLDDAKAVL 370

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S MV S G  PD+ T NS+I  Y   G +    +   +    G K ++ +  IL   + +
Sbjct: 371 SDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCK 430

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+  ++++ M      P  V +N +I  F K   I +  E F++M  +G KP+  T
Sbjct: 431 LGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYT 490

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + SL+S   +   I     +LR + +  V+ +T  +N +I+A+ + G++++  +L   M 
Sbjct: 491 FNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMV 550

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +  + D IT+ ++I+     G  + A++L  KM+
Sbjct: 551 FQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKML 585



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 150/336 (44%), Gaps = 9/336 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G C +   A+ +F  MLS  + P++  +  ++ A      +D A S + DM     C P+
Sbjct: 189 GNCHK--VAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTK-HGCVPN 245

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y  LI S +K +R +   ++L EM  +G    A T+N +I G  K  +  E     +
Sbjct: 246 SVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVN 305

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+   G  PD  T   +++     G ++  +  +        K      N L   +   
Sbjct: 306 RMLIR-GFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPTSVIFNTLIHGFVTH 360

Query: 185 GMYDKMRSVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           G  D  ++V+ D +      P V TYN +I  + K G +    E  + M+++G KPN  +
Sbjct: 361 GRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYS 420

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  LV  + K G I +  ++L ++    +  +T  FNC+ISA+ +   + +  E+F  M 
Sbjct: 421 YTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMP 480

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            + C PD  TF ++I     +   + A  L   MI+
Sbjct: 481 RKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 516



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/328 (18%), Positives = 144/328 (43%), Gaps = 8/328 (2%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+     ++ +++  Y ++G   +    + +M++V  C+P   +Y+++++     +
Sbjct: 131 MKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGN 190

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
              +   +  +M    I  +  T+  ++       + +   S    M + G C P+    
Sbjct: 191 CHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHG-CVPNSVIY 249

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            ++I +      + +  +   E  LMG   D +T N +     +    ++   +++ M  
Sbjct: 250 QTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLI 309

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R F P  +TY  ++    K G ++  ++ F    +R  KP S+ + +L+  +   G +  
Sbjct: 310 RGFTPDDITYGYLMNGLCKIGRVDAAKDLF----YRIPKPTSVIFNTLIHGFVTHGRLDD 365

Query: 260 VDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             ++L  +  S  ++ D   +N +I  Y + G V    E+   M+ + C P+  ++  ++
Sbjct: 366 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILV 425

Query: 319 QAYNALGMTEAAQNLENKMIA--MKENS 344
             +  LG  + A NL N+M A  +K N+
Sbjct: 426 DGFCKLGKIDEAYNLLNEMSADGLKPNT 453



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 101/267 (37%), Gaps = 35/267 (13%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y +LI        F  I+++L +M   GI      + +I+  Y KA    +       M
Sbjct: 107 VYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 166

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
                C P   + N ++     SGN  K            V A++               
Sbjct: 167 RNVYSCEPTFKSYNVVLEIL-VSGNCHK------------VAANV--------------F 199

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           YD        M  R   PT+ T+ +V++       ++      + M   G  PNS+ Y +
Sbjct: 200 YD--------MLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQT 251

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+ + SK   + +   +L ++     + D   FN +I    +   + +  ++   M  R 
Sbjct: 252 LIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRG 311

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNL 333
             PD+IT+  ++     +G  +AA++L
Sbjct: 312 FTPDDITYGYLMNGLCKIGRVDAAKDL 338



 Score = 44.3 bits (103), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 38/198 (19%), Positives = 78/198 (39%), Gaps = 1/198 (0%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I   G++G  + +++   +    G+         + + Y +AG   +   +M  M+  +
Sbjct: 111 LIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVY 170

Query: 202 FF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              PT  +YN+V+E        +     F  M  R + P   T+  ++ A      +   
Sbjct: 171 SCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSA 230

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            S+LR +     + ++  +  +I +  +   V +  +L   M    CVPD  TF  +I  
Sbjct: 231 LSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG 290

Query: 321 YNALGMTEAAQNLENKMI 338
                    A  + N+M+
Sbjct: 291 LCKFDRINEAAKMVNRML 308


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 167/361 (46%), Gaps = 34/361 (9%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-------LLDEAF-------------STI 52
           A  +FE M SDG+ P+  +   LVS++ + G       LL ++F             +T+
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTL 181

Query: 53  NDMKSVSD-------------CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 99
             +  V D             C  D  T++ILI+      + +   ++L  MS  G E  
Sbjct: 182 VKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPD 240

Query: 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
            VTYNT+I G+ K+ +  +    F  +     C PD+ T  SMIS Y  +G + +     
Sbjct: 241 IVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLL 300

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           ++   +G+     T N+L   Y +AG       +   M     FP VVT+  +I+ + + 
Sbjct: 301 DDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRV 360

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G + +    +++M  RGM PN+ TY  L++A      ++K   +L Q+ + D+I     +
Sbjct: 361 GQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMY 420

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I  + +AG V +   +   M+++ C PD ITF  +I  +   G    A ++ +KM+A
Sbjct: 421 NPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVA 480

Query: 340 M 340
           +
Sbjct: 481 I 481



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 139/336 (41%), Gaps = 38/336 (11%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + E+A  L  VM   G +P +  Y  L+  + +S  L++A     D+KS S C PDV TY
Sbjct: 221 KAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTY 280

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I    K  +      +L +M  LGI  + VT+N ++DGY KA +    E     M+ 
Sbjct: 281 TSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMI- 339

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           S GC PD+ T  S+I                                     Y R G   
Sbjct: 340 SFGCFPDVVTFTSLIDG-----------------------------------YCRVGQVS 364

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   + + M  R  FP   TY+I+I        + K  E   ++  + + P    Y  ++
Sbjct: 365 QGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVI 424

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             + KAG + + + I+ ++E      D   F  +I  +   G + +   +F  M    C 
Sbjct: 425 DGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCS 484

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           PD IT ++++      GM + A +L    IA K  S
Sbjct: 485 PDKITVSSLLSCLLKAGMAKEAYHLNQ--IARKGQS 518



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 33/147 (22%)

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI---------- 257
           TYN++  +  KAG  +   + F+ MK  G+ PN+     LVS++++ G +          
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 258 -------MKVDSILRQVENSDVIL----------------DTPFFNCIISAYGQAGDVEK 294
                  M V+S+L  +   D +                 DT  FN +I      G  EK
Sbjct: 165 FEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEK 224

Query: 295 MGELFLTMKERHCVPDNITFATMIQAY 321
             EL   M    C PD +T+ T+IQ +
Sbjct: 225 ALELLGVMSGFGCEPDIVTYNTLIQGF 251


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 167/361 (46%), Gaps = 34/361 (9%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-------LLDEAF-------------STI 52
           A  +FE M SDG+ P+  +   LVS++ + G       LL ++F             +T+
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTL 181

Query: 53  NDMKSVSD-------------CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 99
             +  V D             C  D  T++ILI+      + +   ++L  MS  G E  
Sbjct: 182 VKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPD 240

Query: 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
            VTYNT+I G+ K+ +  +    F  +     C PD+ T  SMIS Y  +G + +     
Sbjct: 241 IVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLL 300

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           ++   +G+     T N+L   Y +AG       +   M     FP VVT+  +I+ + + 
Sbjct: 301 DDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRV 360

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G + +    +++M  RGM PN+ TY  L++A      ++K   +L Q+ + D+I     +
Sbjct: 361 GQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMY 420

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I  + +AG V +   +   M+++ C PD ITF  +I  +   G    A ++ +KM+A
Sbjct: 421 NPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVA 480

Query: 340 M 340
           +
Sbjct: 481 I 481



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 139/336 (41%), Gaps = 38/336 (11%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + E+A  L  VM   G +P +  Y  L+  + +S  L++A     D+KS S C PDV TY
Sbjct: 221 KAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTY 280

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I    K  +      +L +M  LGI  + VT+N ++DGY KA +    E     M+ 
Sbjct: 281 TSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMI- 339

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           S GC PD+ T  S+I                                     Y R G   
Sbjct: 340 SFGCFPDVVTFTSLIDG-----------------------------------YCRVGQVS 364

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   + + M  R  FP   TY+I+I        + K  E   ++  + + P    Y  ++
Sbjct: 365 QGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVI 424

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             + KAG + + + I+ ++E      D   F  +I  +   G + +   +F  M    C 
Sbjct: 425 DGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCS 484

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           PD IT ++++      GM + A +L    IA K  S
Sbjct: 485 PDKITVSSLLSCLLKAGMAKEAYHLNQ--IARKGQS 518



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 33/147 (22%)

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI---------- 257
           TYN++  +  KAG  +   + F+ MK  G+ PN+     LVS++++ G +          
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164

Query: 258 -------MKVDSILRQVENSDVIL----------------DTPFFNCIISAYGQAGDVEK 294
                  M V+S+L  +   D +                 DT  FN +I      G  EK
Sbjct: 165 FEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEK 224

Query: 295 MGELFLTMKERHCVPDNITFATMIQAY 321
             EL   M    C PD +T+ T+IQ +
Sbjct: 225 ALELLGVMSGFGCEPDIVTYNTLIQGF 251


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 170/339 (50%), Gaps = 4/339 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G C    +A  + + M  +G+ P +  +  ++SAY       +A S    MK  ++ +PD
Sbjct: 16  GSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKG-TNIRPD 74

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESS 122
             T +I+I    K  ++    +I + M     EC    VT+ +II  Y    + E+ ++ 
Sbjct: 75  TTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAV 134

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS M+ + G  P+I + N++ISAY + G  ++    ++E    G   D+ +   L  ++G
Sbjct: 135 FSTML-AEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFG 193

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R+    + R V D M++    P +V+YN +++ +G  G++ +  +  ++M+  G+ PN +
Sbjct: 194 RSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVV 253

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           + C+L++A  + G  + +DS+L   E   + L+T   N  I +Y   G+ EK   L+ +M
Sbjct: 254 SICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSM 313

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           + +   PD++TF  +I     +   E A     +M+ ++
Sbjct: 314 ENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLR 352



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 155/314 (49%), Gaps = 2/314 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E    +F  ML++G+KP++  Y AL+SAY   G+  EAFS  ++MK    C PDV +Y
Sbjct: 127 QIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFC-PDVVSY 185

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + LI +  +  +     ++   M     + + V+YN ++D YG      +       M E
Sbjct: 186 TSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREM-E 244

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             G HP++ ++ ++++A G  G    ++   +   L G+  +    N    SY   G Y+
Sbjct: 245 QDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYE 304

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K  ++   M+ +   P  VT+ I+I    +    E+   +FK+M    +  +S  Y S++
Sbjct: 305 KAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMI 364

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
            AYSK G ++K +S+   ++ S    D   +  +I+AY  +   EK+  L+  M+  +  
Sbjct: 365 CAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQ 424

Query: 309 PDNITFATMIQAYN 322
            D+I  + +++A+N
Sbjct: 425 LDSIACSALMKAFN 438



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 152/337 (45%), Gaps = 2/337 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            G+ +QP +A  +F++M  +  KP++  Y AL+ AYG +G L +A   + +M+      P
Sbjct: 192 FGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQ-DGIHP 250

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V +   L+ +C +F +   I+ +L+     GI  + +  N+ I  Y    ++E+  + +
Sbjct: 251 NVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLY 310

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            +M E+    PD  T   +IS        E+   ++ E   + +    +  + +  +Y +
Sbjct: 311 RSM-ENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSK 369

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   K  S+ + ++     P +VTY  +I  +  +   EK+   +++M+   ++ +SI 
Sbjct: 370 QGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIA 429

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
             +L+ A++K      V  +   ++   +  +   F  ++SA     D  K  +L   M+
Sbjct: 430 CSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWRKATDLINLME 489

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
               +    T   ++Q     G TE    L  + +A+
Sbjct: 490 PSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVAL 526



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 37/241 (15%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P   T N++I+A G+ GN  +  +   +    GV  D+ T NI+  +Y     Y K  S 
Sbjct: 3   PSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSY 62

Query: 194 MDFMQKRFFFPTVVTYNIVI------ETFGKA---------------------------- 219
            + M+     P   T NIVI      + +G+A                            
Sbjct: 63  FELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLY 122

Query: 220 ---GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
              G IE  +  F  M   G+KPN ++Y +L+SAY+  G+  +  S+  +++ S    D 
Sbjct: 123 SVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDV 182

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             +  +IS +G++    +  E+F  MK   C P+ +++  ++ AY + G    A ++  +
Sbjct: 183 VSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILRE 242

Query: 337 M 337
           M
Sbjct: 243 M 243



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 143/366 (39%), Gaps = 75/366 (20%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSA---YGQSGLLDEAFST--------------- 51
           P+   +L E M  DG+ P+V     L++A   +GQ   +D   S                
Sbjct: 234 PQAVDILRE-MEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNS 292

Query: 52  --------------INDMKSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 95
                         IN  +S+ +   KPD  T++ILI  C +  +++       EM  L 
Sbjct: 293 AIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLR 352

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
           I  S+  Y+++I  Y K  +  + ES F+++ +  GC PD+ T  +MI+AY  S   EK+
Sbjct: 353 IPLSSEIYSSMICAYSKQGQLVKAESLFNSL-KGSGCCPDLVTYTAMINAYSASEMWEKV 411

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGM----------------------------- 186
              Y E     ++ D    + L K++ +                                
Sbjct: 412 CALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSA 471

Query: 187 ------YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                 + K   +++ M+  F   ++ T N +++  GK+G  E M + F +    G   N
Sbjct: 472 CSILRDWRKATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVN 531

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY  L+     AG   K   +L+ + ++ +      +N I+      GD E       
Sbjct: 532 INTYSILLKNLLSAGKWRKYIEVLQWMNDAGIQPSHAMYNNILFFAQHCGDAEYAA---- 587

Query: 301 TMKERH 306
            +KER+
Sbjct: 588 VIKERN 593


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 165/350 (47%), Gaps = 36/350 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---------------FS 50
           K  + ++A  + + M+S+ L P V  Y +LV+   ++G +DEA               +S
Sbjct: 92  KADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYS 151

Query: 51  TI-----NDMKSVSDC------------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 93
           T+      +++ VS+             +P+V TY+ILI    K  R +   ++ + +  
Sbjct: 152 TLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVK 211

Query: 94  LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153
            G+E  A+TY   IDG  KA + E+       M E G C PD+ + N++I+       ++
Sbjct: 212 HGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG-CVPDVVSHNAVINGLCKEKRVD 270

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
           + E   +     G   +  + N L     RAG + K  +    M KR   PTVVTYNI++
Sbjct: 271 EAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILV 330

Query: 214 ETFGKA---GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           +   KA   G I++    F  M  +G  P+ +TY +L+    KAG +     +L  +E  
Sbjct: 331 DGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAK 390

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             I +   +N +IS       V++  ELF+ M E+ CVPD IT+ T+I A
Sbjct: 391 GCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 139/305 (45%), Gaps = 16/305 (5%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G  P+   Y AL+S     G + +A +    M   +   PDV TY+ L+    K  
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIK-AGYSPDVVTYNTLLHGFCKVG 59

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             D   KI       G     VTYN +I+G+ KA K +E +     MV S    PD+ T 
Sbjct: 60  ELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMV-SENLVPDVVTY 118

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ- 198
           NS+++    +G ++       E  ++ V       N++T S   +G+  ++R V + ++ 
Sbjct: 119 NSLVNGLCKNGRVD-------EARMLIVDKGFSP-NVITYSTLISGLCRELRGVSEALKL 170

Query: 199 -----KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
                K+ + P V TYNI+I+   K   + +  E F  +   G++P++ITY   +    K
Sbjct: 171 FGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCK 230

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           AG +     +L+ ++    + D    N +I+   +   V++   L   M+ + C P+ I+
Sbjct: 231 AGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAIS 290

Query: 314 FATMI 318
           F T+I
Sbjct: 291 FNTLI 295



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 152/363 (41%), Gaps = 36/363 (9%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            A  L+E M+  G  P V  Y  L+  + + G LDEA   I D        PDV TY+ L
Sbjct: 28  DAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALK-IFDGAVKRGFVPDVVTYNAL 86

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-----MESSFSAM 126
           I    K  + D  ++IL  M    +    VTYN++++G  K  + +E     ++  FS  
Sbjct: 87  INGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPN 146

Query: 127 V------ESGGCH---------------------PDIFTLNSMISAYGNSGNIEKMEKWY 159
           V       SG C                      P++ T N +I        + +  + +
Sbjct: 147 VITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELF 206

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           +     G++ D  T  +      +AG  +    ++  M ++   P VV++N VI    K 
Sbjct: 207 SGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKE 266

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
             +++ E     M+ +G  PN+I++ +L+    +AG   K  +  +++    V      +
Sbjct: 267 KRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTY 326

Query: 280 NCIISAYGQA---GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
           N ++    +A   G +++   LF  M E+  VPD +T++ +I      G  + A+ L   
Sbjct: 327 NILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGA 386

Query: 337 MIA 339
           M A
Sbjct: 387 MEA 389



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 42/251 (16%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E A L+ + M   G  P V  + A+++   +   +DEA   ++ M++   C 
Sbjct: 227 GLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEA-KGCS 285

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK---KFEEM 119
           P+  +++ LI    +  ++        EM   G++ + VTYN ++DG  KA+   + +E 
Sbjct: 286 PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEA 345

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            + F AM+E G   PD+ T +++I   G +G +                           
Sbjct: 346 ITLFDAMIEKGRV-PDVVTYSALIDGLGKAGKL--------------------------- 377

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                   D  R ++  M+ +   P V TYN +I        +++  E F  M  +G  P
Sbjct: 378 --------DDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVP 429

Query: 240 NSITYCSLVSA 250
           ++ITY +++SA
Sbjct: 430 DTITYGTIISA 440



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/108 (21%), Positives = 53/108 (49%)

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M+  G  PN ITY +L+S     G +    ++  ++  +    D   +N ++  + + G+
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +++  ++F    +R  VPD +T+  +I  +      + AQ +  +M++
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS 108


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 150/319 (47%), Gaps = 2/319 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M + G+KP++  Y  +V  Y  SG ++ A + +  MK     +PD +TY  LI    K  
Sbjct: 247 METSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKR-QKIEPDSFTYGSLISGMCKQG 305

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R +   KI  EM   G+  SAV YNT+IDG+      + M S++   +   G  P + T 
Sbjct: 306 RLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD-MASAYKDEMLKKGISPTMSTY 364

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           NS+I A       ++ E    E    G+  D  T NIL   Y R     K   + D M  
Sbjct: 365 NSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLA 424

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               PT  TY  ++    K   +++ ++ FKK+   G+ P+ I + +L+  +     +  
Sbjct: 425 SGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKG 484

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +L+ ++   V  D   FN I+  + + G VE+  ELF  MK R   PD+I+F T+I 
Sbjct: 485 AFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLIS 544

Query: 320 AYNALGMTEAAQNLENKMI 338
            Y+  G  + A  + N+M+
Sbjct: 545 GYSRRGDIKDAFRVRNEML 563



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 160/340 (47%), Gaps = 24/340 (7%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 60
           G CKQ   E+AS +FE M+  GL+PS  +Y  L+  +   G LD A +  ++M  K +S 
Sbjct: 300 GMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGIS- 358

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P + TY+ LI +     R D  E ++ E+   GI   A+TYN +I+GY +    ++  
Sbjct: 359 --PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAF 416

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M+ SG   P   T  S++        +++ +  + +    GV  D+   N L   
Sbjct: 417 LLHDEMLASG-IKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDG 475

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           +           ++  M +    P  VT+N +++   + G +E+  E F +MK RG+KP+
Sbjct: 476 HCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPD 535

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF------FNCIISAY--GQAGDV 292
            I++ +L+S YS+ G I     +  +      +LDT F      +N ++      Q GD+
Sbjct: 536 HISFNTLISGYSRRGDIKDAFRVRNE------MLDTGFNPTVLTYNALVQGLCKNQEGDL 589

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
            +  EL   M  +   PD+ T+ T+I+    + + +  +N
Sbjct: 590 AE--ELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENKN 627



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 157/364 (43%), Gaps = 37/364 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + ++A   F  M   G+ P+++   +L+S + +    + A+    +M  +   K  VYT+
Sbjct: 166 RADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLR-IKSSVYTF 224

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I+I    K  +    +  +  M   G++ + VTYNTI+ GY  + + E  ++  + M +
Sbjct: 225 NIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM-K 283

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                PD FT  S+IS     G +E+  K + E    G++      N L   +   G  D
Sbjct: 284 RQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLD 343

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
              +  D M K+   PT+ TYN +I         ++ E   K+++ +G+ P++ITY  L+
Sbjct: 344 MASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILI 403

Query: 249 SAY-----------------------------------SKAGLIMKVDSILRQVENSDVI 273
           + Y                                   SK   + + D + +++ +  V+
Sbjct: 404 NGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVL 463

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   FN +I  +    +V+   EL   M      PD +TF T++Q +   G  E A+ L
Sbjct: 464 PDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAREL 523

Query: 334 ENKM 337
            ++M
Sbjct: 524 FDEM 527



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 140/316 (44%), Gaps = 3/316 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G K S+ V+  L+ +       DEAF     MK      P + T + L+    K +R + 
Sbjct: 147 GFKSSI-VFDYLIKSCCDMNRADEAFECFYTMKE-KGVLPTIETCNSLLSLFLKLNRTEA 204

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              + AEM  L I+ S  T+N +I+   K  K ++ +  F   +E+ G  P+I T N+++
Sbjct: 205 AWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKD-FVGHMETSGVKPNIVTYNTIV 263

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             Y +SG +E  +          ++ D  T   L     + G  ++   + + M ++   
Sbjct: 264 HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLR 323

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P+ V YN +I+ F   G+++    Y  +M  +G+ P   TY SL+ A        + + +
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECM 383

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           +++++   +  D   +N +I+ Y +  + +K   L   M      P   T+ +++   + 
Sbjct: 384 IKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSK 443

Query: 324 LGMTEAAQNLENKMIA 339
               + A +L  K+ +
Sbjct: 444 KNRMKEADDLFKKITS 459



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 105/239 (43%), Gaps = 2/239 (0%)

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           ++ E + A    LG + S++ ++ +I       + +E    F  M E G   P I T NS
Sbjct: 134 EIFEFLAASRDRLGFK-SSIVFDYLIKSCCDMNRADEAFECFYTMKEKG-VLPTIETCNS 191

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           ++S +      E     Y E   + +K+ + T NI+     + G   K +  +  M+   
Sbjct: 192 LLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSG 251

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P +VTYN ++  +  +G +E  +     MK + ++P+S TY SL+S   K G + +  
Sbjct: 252 VKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEAS 311

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            I  ++    +      +N +I  +   G+++        M ++   P   T+ ++I A
Sbjct: 312 KIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHA 370



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C++   E+A  LF+ M   G+KP    +  L+S Y + G + +AF   N+M   +
Sbjct: 507 IMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLD-T 565

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112
              P V TY+ L++   K    DL E++L EM   G+     TY T+I+G  K
Sbjct: 566 GFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAK 618



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 92/191 (48%), Gaps = 2/191 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L K  + ++A  LF+ + S+G+ P V ++ AL+  +  +  +  AF  + DM  +    
Sbjct: 440 VLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMK-VP 498

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  T++ +++   +  + +   ++  EM   GI+   +++NT+I GY +    ++    
Sbjct: 499 PDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRV 558

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M+++ G +P + T N+++     +   +  E+   E    G+  D  T   L +   
Sbjct: 559 RNEMLDT-GFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIA 617

Query: 183 RAGMYDKMRSV 193
           +  + D+ ++ 
Sbjct: 618 KVNIPDENKNT 628


>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 170/359 (47%), Gaps = 39/359 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------- 57
           + K+ + A  LF+ M    L P    Y+ L++++G++G+ DE+   +  M+         
Sbjct: 146 RAKKWDLAHGLFDEMRQRALSPDRYTYSTLITSFGKAGMFDESLFWLQQMEQDRVSGDLV 205

Query: 58  --------------------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
                                      S   PD+  Y+ +I    K   F     ++ EM
Sbjct: 206 LYSNLIELSRKLCDYSKAISIFMRLKRSGITPDLVAYNSMINVFGKARLFREARMLVHEM 265

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
             +G+    V+Y+T++  Y + +KF E  S F+ M E+  C  D+ T N MI  YG    
Sbjct: 266 REVGVLPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAN-CSLDLMTCNIMIDVYGQLDM 324

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++ ++ +     MG++ ++ + N L K YG A ++ +   +   MQ++     VVTYN 
Sbjct: 325 VKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNT 384

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ +GK+   EK     ++M+ RG++PN+ITY +++S + KAG + +   + +++ +S 
Sbjct: 385 MIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSG 444

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           V +D   +  +I AY +AG V     L   +K   C PD I   T I+     G  E A
Sbjct: 445 VEIDQVLYQTMIVAYERAGLVAHAKRLLHDLK---C-PDIIPRDTAIKILARAGRIEEA 499



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 165/356 (46%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P +  Y ++++ +G++ L  EA   +++M+ V    PD  +YS L+   
Sbjct: 226 IFMRLKRSGITPDLVAYNSMINVFGKARLFREARMLVHEMREVG-VLPDTVSYSTLLSVY 284

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM+        +T N +ID YG+    +E +  F +M    G  P+
Sbjct: 285 VENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSM-RKMGIEPN 343

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG +   E   +  + F LM    ++ ++ T N + K YG++  ++K  +
Sbjct: 344 VVSYNTLLKVYGEA---ELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATN 400

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQKR   P  +TY+ +I  +GKAG +++    F+K++  G++ + + Y +++ AY 
Sbjct: 401 LVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 460

Query: 253 KAGLIMKVDSILRQVENSDVIL-------------------------------DTPFFNC 281
           +AGL+     +L  ++  D+I                                D   F C
Sbjct: 461 RAGLVAHAKRLLHDLKCPDIIPRDTAIKILARAGRIEEATWVFRQAFDAGEVKDISVFRC 520

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   E A  +  +M
Sbjct: 521 MIELFSRNKRPANVVEVFEKMRGAGYFPDSDVIALVLNAYGKLREFEKADAVYREM 576



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 152/337 (45%), Gaps = 34/337 (10%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           +VS   Q      + + ++ +  V+   P V+ Y++++++  +  ++DL   +  EM   
Sbjct: 104 MVSLISQEADWQRSLALLDWINEVARYSPSVFAYNVVLRNVLRAKKWDLAHGLFDEMRQR 163

Query: 95  GIECSAVTYNTIIDGYGKAKKFEE-------MESS--------FSAMVE----------- 128
            +     TY+T+I  +GKA  F+E       ME          +S ++E           
Sbjct: 164 ALSPDRYTYSTLITSFGKAGMFDESLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKA 223

Query: 129 --------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                     G  PD+   NSMI+ +G +    +     +E   +GV  D  + + L   
Sbjct: 224 ISIFMRLKRSGITPDLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTLLSV 283

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y     + +  SV   M +      ++T NI+I+ +G+   +++ +  F  M+  G++PN
Sbjct: 284 YVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQLDMVKEADRLFWSMRKMGIEPN 343

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ++Y +L+  Y +A L  +   + R ++  ++  +   +N +I  YG++ + EK   L  
Sbjct: 344 VVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQ 403

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M++R   P+ IT++T+I  +   G  + A  L  K+
Sbjct: 404 EMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKL 440



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 140/320 (43%), Gaps = 22/320 (6%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG++ L  EA      M+   + + +
Sbjct: 320 GQLDMVKEADRLFWSMRKMGIEPNVVSYNTLLKVYGEAELFGEAIHLFRLMQR-KEIEQN 378

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ +IK   K    +    ++ EM   GIE +A+TY+TII  +GKA K +     F 
Sbjct: 379 VVTYNTMIKIYGKSLEHEKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQ 438

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +  S G   D     +MI AY  +G +   ++  ++        DI   +   K   RA
Sbjct: 439 KL-RSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHDLKC----PDIIPRDTAIKILARA 493

Query: 185 GMYDK----MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           G  ++     R   D  + +     +  +  +IE F +      + E F+KM+  G  P+
Sbjct: 494 GRIEEATWVFRQAFDAGEVK----DISVFRCMIELFSRNKRPANVVEVFEKMRGAGYFPD 549

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF- 299
           S     +++AY K     K D++ R+++  + +        ++S YG   D   +  LF 
Sbjct: 550 SDVIALVLNAYGKLREFEKADAVYREMQEEECVFPDEVHFQMLSLYGARKDFIMVESLFE 609

Query: 300 -------LTMKERHCVPDNI 312
                  +  KE H V  +I
Sbjct: 610 KLDSDPNINKKELHLVVASI 629


>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like, partial [Cucumis sativus]
          Length = 312

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 154/290 (53%), Gaps = 2/290 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +F+ M +   KP++  +TALV+A  + GL ++A      M+  +  +PDVY Y+ L+
Sbjct: 15  AQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQE-AGYEPDVYAYNALM 73

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
           +S ++        +I + M ++G E    +YN ++D YG+A   E+ ++ F  M +  G 
Sbjct: 74  ESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEM-KRIGI 132

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            P + +   ++SAY ++GN+ K E    + +  G+K D   +N +   YGR G + KM  
Sbjct: 133 TPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMED 192

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   MQK      + TYNI+I  +G+AG +E+MEE F+ +  + ++P+ +T+ S + AYS
Sbjct: 193 LFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYS 252

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +  L  +   +  ++ ++    D      ++SA      +E++  +  TM
Sbjct: 253 RKKLYKRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTM 302



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 134/256 (52%), Gaps = 1/256 (0%)

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
           + + I  EM     + +  T+  +++   +    E+ E  F  M E+G   PD++  N++
Sbjct: 14  MAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAG-YEPDVYAYNAL 72

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           + +Y  +G      + ++    MG + D  + NI+  +YGRAG+++  ++V + M++   
Sbjct: 73  MESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGI 132

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            PT+ ++ +++  +  AG++ K E+   +M   G+KP++    S+++ Y + G   K++ 
Sbjct: 133 TPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMED 192

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           +   ++      D   +N +I+ YG+AG VE+M ELF  +  ++  PD +T+ + I AY+
Sbjct: 193 LFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYS 252

Query: 323 ALGMTEAAQNLENKMI 338
              + +    L  KMI
Sbjct: 253 RKKLYKRCLELFEKMI 268



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 125/258 (48%), Gaps = 8/258 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL---LDEAFSTINDMKSVSDCKPDVYT 67
           E+A  +FE M   G +P V  Y AL+ +Y ++G      E FS +  M     C+PD  +
Sbjct: 48  EKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHM----GCEPDRAS 103

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+I++ +  +    +  + +  EM  +GI  +  ++  ++  Y  A    + E     M 
Sbjct: 104 YNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMH 163

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           +S G  PD F +NSM++ YG  G   KME  ++       +ADI T NIL   YGRAG  
Sbjct: 164 KS-GLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFV 222

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           ++M  +   +  +   P VVT+   I  + +    ++  E F+KM   G  P+  T   L
Sbjct: 223 ERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDGGTAKVL 282

Query: 248 VSAYSKAGLIMKVDSILR 265
           +SA S    I +V +++R
Sbjct: 283 LSACSSEEQIEQVTNVVR 300



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 131/286 (45%), Gaps = 1/286 (0%)

Query: 52  INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 111
           I D      CKP++ T++ L+ +  +    +  E+I  +M   G E     YN +++ Y 
Sbjct: 18  IFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYS 77

Query: 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
           +A  F    +   ++++  GC PD  + N M+ AYG +G  E  +  + E   +G+   +
Sbjct: 78  RAG-FPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTM 136

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
           ++  +L  +Y  AG   K   ++  M K    P     N ++  +G+ G   KME+ F  
Sbjct: 137 KSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFST 196

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M+    + +  TY  L++ Y +AG + +++ + + +   ++  D   +   I AY +   
Sbjct: 197 MQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKL 256

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            ++  ELF  M +  C PD  T   ++ A ++    E   N+   M
Sbjct: 257 YKRCLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTM 302



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 3/229 (1%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           P  A+ +F +M   G +P    Y  +V AYG++GL ++A +   +MK +    P + ++ 
Sbjct: 82  PYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIG-ITPTMKSHM 140

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           +L+ + +        E I+ +M   G++      N++++ YG+  +F +ME  FS M + 
Sbjct: 141 LLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTM-QK 199

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G C  DI T N +I+ YG +G +E+ME+ +       ++ D+ T      +Y R  +Y +
Sbjct: 200 GPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKR 259

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
              + + M     +P   T  +++        IE++    + M H+ +K
Sbjct: 260 CLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTM-HKDLK 307


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 3/304 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
             + M+  GL+P   +Y  ++   G++ ++DEA      MKS+  C  D YTY+ILI+S 
Sbjct: 71  FLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMG-CPADDYTYAILIRSL 129

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  R +    +  EM   G   SA  Y  +ID Y KA + E        M++     PD
Sbjct: 130 GRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKN-LAPD 188

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            +TLNS+I+A   +G  E   + +      GV  +  + N +    G+AG        MD
Sbjct: 189 DYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMD 248

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ R   P  +T+N +I   G+A +  +  +  ++M+  G+ P+  TY  ++ A++KAG
Sbjct: 249 EMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAG 308

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + K   +   +E +    +   +N +I A  +AG  +   +++  MK++  +PD IT A
Sbjct: 309 NMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAIT-A 367

Query: 316 TMIQ 319
           T++Q
Sbjct: 368 TVLQ 371



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 2/240 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+CK+ E+A+LLF+ M   G  PS   YT ++  Y ++G ++ A   +  M    +  P
Sbjct: 129 LGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLD-KNLAP 187

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D YT + LI + ++  R +L  +I   M   G+  + V++N ++D  GKA K   +   F
Sbjct: 188 DDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVG-LAYQF 246

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              +E+ G  P+  T N++I+  G +    +  K   E    G+  D+ T   + +++ +
Sbjct: 247 MDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAK 306

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG   K   +   M+K      VVTYN++I+   KAG  +   + +  MK +G+ P++IT
Sbjct: 307 AGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAIT 366



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 123/268 (45%), Gaps = 9/268 (3%)

Query: 68  YSILIKSC--TKFHRFDLIEKILAEMSYL---GIECSAVTYNTIIDGYGKAKKFEEMESS 122
           Y +L+ +     + R   I K++ E   L   G + +A TY  +I    KA         
Sbjct: 12  YHVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDF 71

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+++G   PD    N ++   G +  I++  K +     MG  AD  T  IL +S G
Sbjct: 72  LDKMIKTG-LEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLG 130

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R    ++   + D M++R   P+   Y  VI+ + KAG IE      KKM  + + P+  
Sbjct: 131 RCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDY 190

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T  SL++A S+ G       I  +++ S V ++T  FN ++   G+AG V    +    M
Sbjct: 191 TLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEM 250

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
           + R   P++ITF T+I   N LG  + A
Sbjct: 251 EARGIKPNSITFNTLI---NCLGRAKYA 275



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 96/213 (45%)

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           A ++   C   +   N++I+AYG S  I K+   + E +  G K +  T   + +S  +A
Sbjct: 3   AAIQDTPCRYHVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKA 62

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G        +D M K    P  + YN+V++  GKA  I++  + F  MK  G   +  TY
Sbjct: 63  GNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTY 122

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L+ +  +     +   +  ++E        P +  +I  Y +AG +E    +   M +
Sbjct: 123 AILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLD 182

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++  PD+ T  ++I A +  G TE A  +  +M
Sbjct: 183 KNLAPDDYTLNSLITAVSRTGRTELACEIFERM 215



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 3/243 (1%)

Query: 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
           N +I  YG++ +  ++   F  + +  G  P+ +T   +I +   +GN+     + ++  
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQEL-DKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMI 76

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
             G++ D    N++    G+A M D+   +   M+         TY I+I + G+    E
Sbjct: 77  KTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDE 136

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
           +    F +M+ RG  P++  Y +++  Y KAG I     +L+++ + ++  D    N +I
Sbjct: 137 EATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLI 196

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA--MK 341
           +A  + G  E   E+F  MK+     + ++F  M+      G    A    ++M A  +K
Sbjct: 197 TAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIK 256

Query: 342 ENS 344
            NS
Sbjct: 257 PNS 259


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 162/340 (47%), Gaps = 2/340 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV  GK +  +    L E M S GL+P++  YT  +   G+ G +DEA+  +  M     
Sbjct: 236 MVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDD-DG 294

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C PDV TY++LI +     + D    +  +M     +   VTY T++D +      +++E
Sbjct: 295 CGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVE 354

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             ++ M E+ G  PD+ T   +++A   +G I +     +     GV  ++ T N L   
Sbjct: 355 KIWTEM-EADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISG 413

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             RA   D    +   M+     PT  TY ++I+  GK+GH  K  E F+KMK RG+ PN
Sbjct: 414 LLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPN 473

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +   + + + ++ G + +  ++  ++++S +  D+  +N ++  Y + G V++  +L  
Sbjct: 474 IVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLS 533

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            M +  C PD I   ++I      G  E A  +  +M  M
Sbjct: 534 EMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM 573



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 156/315 (49%), Gaps = 2/315 (0%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C   ++   ++  M +DG  P V  +T LV+A  ++G ++EAF  ++ M+      P+++
Sbjct: 347 CGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRK-QGVLPNLH 405

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY+ LI    + +R D    + + M  LG+E +A TY  +ID +GK+    +   +F  M
Sbjct: 406 TYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKM 465

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            ++ G  P+I   N+ + +    G + + +  +NE    G+  D  T N++ K Y + G 
Sbjct: 466 -KARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQ 524

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D+   ++  M K    P V+  N +I+T  KAG +E+  + F +M+   + P  +TY  
Sbjct: 525 VDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNI 584

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++   K G I K   +   +       +T  FN ++    +  +V+   ++F  M   +
Sbjct: 585 LLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMN 644

Query: 307 CVPDNITFATMIQAY 321
           C PD +TF T+I  +
Sbjct: 645 CRPDVLTFNTIIHGF 659



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 149/307 (48%), Gaps = 2/307 (0%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E A  LFE M S G  P    Y +L+ A+G+SG ++E F   ++M +   CKP+  TY++
Sbjct: 807  EVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLT-RGCKPNTITYNM 865

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            +I +  K +R D    +   +       +  T+  +IDG  K+ + ++    F  MV   
Sbjct: 866  VISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHY- 924

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            GC P+    N +++ YG  G+++   +++      G++ D+++  IL      AG  D  
Sbjct: 925  GCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDA 984

Query: 191  RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
                + +++    P +V YN++I   G++   E+    F +M++RG+ P+  TY SL+  
Sbjct: 985  LHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILN 1044

Query: 251  YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
                G+I +   I  +++   +  +   +N +I  Y  +G+ E    ++  M    C P+
Sbjct: 1045 LGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPN 1104

Query: 311  NITFATM 317
              TFA +
Sbjct: 1105 TGTFAQL 1111



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 152/316 (48%), Gaps = 2/316 (0%)

Query: 24   GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
            G+KP++ VY  L+  + +   ++ A++   +MKS + C PD +TY+ LI +  K  + + 
Sbjct: 785  GVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKS-AGCAPDTFTYNSLIDAHGKSGKINE 843

Query: 84   IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            +  +  EM   G + + +TYN +I    K+ + ++    +  +V SG   P   T   +I
Sbjct: 844  LFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLV-SGDFSPTPCTFGPLI 902

Query: 144  SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 SG ++   + ++     G + +    NIL   YG+ G  D        M K    
Sbjct: 903  DGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIR 962

Query: 204  PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
            P + +Y I+++    AG ++    YF+K+K  G+ P+ + Y  +++   ++    +  S+
Sbjct: 963  PDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSL 1022

Query: 264  LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              +++N  ++ D   +N +I   G  G +E+ G+++  ++     P+  T+  +I+ Y  
Sbjct: 1023 FHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTL 1082

Query: 324  LGMTEAAQNLENKMIA 339
             G +E A  +  KM+ 
Sbjct: 1083 SGNSELAYGIYKKMMV 1098



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 142/321 (44%), Gaps = 40/321 (12%)

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY-LGIECSAVTYNTIIDGYGKAKKFEEM 119
            CK D     I IK   K  +  +   +  + +  LG++ +   YN +IDG+ +    E  
Sbjct: 751  CKDDSVLIPI-IKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVA 809

Query: 120  ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI--- 176
             + F  M +S GC PD FT NS+I A+G SG I ++   Y+E    G K +  T N+   
Sbjct: 810  WNLFEEM-KSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVIS 868

Query: 177  -LTKS------------------------YG-------RAGMYDKMRSVMDFMQKRFFFP 204
             L KS                        +G       ++G  D    + D M      P
Sbjct: 869  NLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRP 928

Query: 205  TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
                YNI++  +GK GH++   E+FK+M   G++P+  +Y  LV     AG +       
Sbjct: 929  NSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYF 988

Query: 265  RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             +++ + +  D   +N +I+  G++   E+   LF  M+ R  VPD  T+ ++I     +
Sbjct: 989  EKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIV 1048

Query: 325  GMTEAAQNL--ENKMIAMKEN 343
            GM E A  +  E + I +K N
Sbjct: 1049 GMIEEAGKIYEELQFIGLKPN 1069



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 120/251 (47%), Gaps = 2/251 (0%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            GK  +  +   L++ ML+ G KP+   Y  ++S   +S  LD+A     ++ S  D  P 
Sbjct: 836  GKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVS-GDFSPT 894

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              T+  LI    K  R D   ++   M + G   ++  YN +++GYGK    +     F 
Sbjct: 895  PCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFK 954

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             MV+  G  PD+ +   ++     +G ++    ++ +    G+  D+   N++    GR+
Sbjct: 955  RMVKE-GIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRS 1013

Query: 185  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
               ++  S+   MQ R   P + TYN +I   G  G IE+  + +++++  G+KPN  TY
Sbjct: 1014 QRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTY 1073

Query: 245  CSLVSAYSKAG 255
             +L+  Y+ +G
Sbjct: 1074 NALIRGYTLSG 1084



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 127/274 (46%), Gaps = 1/274 (0%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           E  + + D+      + +V TY I+ KS             L +M   G   +A +YN +
Sbjct: 141 EDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGL 200

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           I    ++   +E    +  MV S G  P + T ++++ A G   NI+ +     E   MG
Sbjct: 201 IHFLLQSGFCKEALEVYRRMV-SEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMG 259

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ +I T  I  +  GR G  D+   +M  M      P VVTY ++I+    A  ++   
Sbjct: 260 LRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAM 319

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
             F KMK    KP+ +TY +L+  +S  G + KV+ I  ++E      D   F  +++A 
Sbjct: 320 CLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNAL 379

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            +AG + +  +L  TM+++  +P+  T+ T+I  
Sbjct: 380 CKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISG 413



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 118/265 (44%), Gaps = 2/265 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +  + + A  LF  M S G++P+   Y  L+  +G+SG   +A  T   MK+     P
Sbjct: 414 LLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKA-RGIAP 472

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++   +  + S  +  R    + +  E+   G+   +VTYN ++  Y K  + +E     
Sbjct: 473 NIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLL 532

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M +   C PD+  +NS+I     +G +E+  + +     M +   + T NIL    G+
Sbjct: 533 SEMSKVQ-CEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGK 591

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   K   + + M      P  +T+N +++   K   ++   + F KM     +P+ +T
Sbjct: 592 EGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLT 651

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVE 268
           + +++  + K   I     +  Q++
Sbjct: 652 FNTIIHGFIKQNQIKNAIWLFHQMK 676



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 38/371 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  Q ++A  LFE M   G  P+   +  L+    ++  +D A      M ++ +C+P
Sbjct: 589 LGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTM-NCRP 647

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE----- 118
           DV T++ +I    K ++      +  +M  L +    VT  T++ G  K+ + E+     
Sbjct: 648 DVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSGQIEDAFRIT 706

Query: 119 ----------MESSF------SAMVESGGCHPDIFTLNSMISAYGNSGNI---------- 152
                     ++ SF        + E+G     +F    +  A     ++          
Sbjct: 707 EDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCK 766

Query: 153 -EKMEKWYNEF----NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            +K     N F      +GVK  ++  N+L   +      +   ++ + M+     P   
Sbjct: 767 HKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTF 826

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TYN +I+  GK+G I ++ + + +M  RG KPN+ITY  ++S   K+  + K   +   +
Sbjct: 827 TYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNL 886

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
            + D       F  +I    ++G ++   E+F  M    C P++  +  ++  Y  LG  
Sbjct: 887 VSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHV 946

Query: 328 EAAQNLENKMI 338
           + A     +M+
Sbjct: 947 DTACEFFKRMV 957



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 145/350 (41%), Gaps = 40/350 (11%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  Q ++A  L   M     +P V V  +L+    ++G ++EA+     M+ + +  P V
Sbjct: 521 KVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM-NLAPTV 579

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+IL+    K  +     ++   M+  G   + +T+NT++D   K  + +     F  
Sbjct: 580 VTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYK 639

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M  +  C PD+ T N++I  +     I+     +++   + ++ D  TL  L     ++G
Sbjct: 640 MT-TMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSG 697

Query: 186 -MYDKMRSVMDFMQK------RFFFPTVVTYNI--------------------------- 211
            + D  R   DF  +      R F+  V+   +                           
Sbjct: 698 QIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVL 757

Query: 212 --VIETFGKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
             +I+   K          F K  K  G+KP    Y  L+  + +   +    ++  +++
Sbjct: 758 IPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMK 817

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           ++    DT  +N +I A+G++G + ++ +L+  M  R C P+ IT+  +I
Sbjct: 818 SAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVI 867



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 84/183 (45%)

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T N M+        +E M   ++      ++ ++ T  I+ KS    G   +  S ++ M
Sbjct: 126 TCNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKM 185

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++  F     +YN +I    ++G  ++  E +++M   G+KP+  T+ +L+ A  K   I
Sbjct: 186 REAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNI 245

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
             V  +L ++E+  +  +   +   I   G+ G +++   +   M +  C PD +T+  +
Sbjct: 246 KTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVL 305

Query: 318 IQA 320
           I A
Sbjct: 306 IDA 308



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 36/224 (16%)

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
             +  S+   M E+G    + ++ N +I     SG  ++  + Y      G+K  ++T +
Sbjct: 175 LRQAPSALEKMREAGFVL-NAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFS 233

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L  + G+      +  +++ M+     P + TY I I   G+ G I++     K+M   
Sbjct: 234 ALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDD 293

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G  P+ +TY  L+ A   A    K+D  +                C              
Sbjct: 294 GCGPDVVTYTVLIDALCTA---RKLDDAM----------------C-------------- 320

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             LF  MK     PD +T+ T++  ++  G  +  + +  +M A
Sbjct: 321 --LFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEA 362


>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
 gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
          Length = 521

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 159/370 (42%), Gaps = 40/370 (10%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           P    +   V+     +P +  Y  L+ AYG+S  +++A  T N M+    C P+  T+ 
Sbjct: 85  PRVTQMCEWVLQGTAFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEAL-CVPNEETFG 143

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           +LI        F+  E++  +M   G     +  NT +     AK++   E+ F  + E 
Sbjct: 144 VLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDL-EK 202

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY-- 187
             C P+I T N MI  YG +G   K E  Y          +I T   L  ++ R G+Y  
Sbjct: 203 YECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYRE 262

Query: 188 -----DKMRS----------------------------VMDFMQKRFFFPTVVTYNIVIE 214
                DK++                             +   MQ+   FP  V++NI+I 
Sbjct: 263 AERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILIN 322

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +G+AG  E  E+ FK M+  G  PN  +   L+SAY++AG + + + ++  +E      
Sbjct: 323 AYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKP 382

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTM---KERHCVPDNITFATMIQAYNALGMTEAAQ 331
           DT  +N +I+AYG +G  E M  L   M     +   PD  T+ T+IQ Y   G    A+
Sbjct: 383 DTLIYNALINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAE 442

Query: 332 NLENKMIAMK 341
            L   +  +K
Sbjct: 443 ELFQGLARLK 452



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 160/308 (51%), Gaps = 5/308 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+ GK  +P +A +L+  M      P++  +TAL++A+ + GL  EA    + ++   D
Sbjct: 216 IVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEF-D 274

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KPD Y Y+ L+++ ++        +I   M   G     V++N +I+ YG+A  +E+ E
Sbjct: 275 YKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAE 334

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F +M +S G  P++ +   ++SAY  +G +E+ E+  +     G K D    N L  +
Sbjct: 335 KIFKSM-QSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINA 393

Query: 181 YGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
           YG +G ++ M +++  M K   +   P + TYN +I+ + +AG I K EE F+ +    +
Sbjct: 394 YGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLARLKL 453

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P++ T+ +L+  Y+K  L  K  SIL+++  S    D      + SA      VE++ +
Sbjct: 454 VPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQVEQVTQ 513

Query: 298 LFLTMKER 305
           L  +++ R
Sbjct: 514 LMESLQGR 521



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 143/321 (44%), Gaps = 5/321 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L   K+  +A  LF  +     +P++D Y  ++  YG++G   +A      M+    C 
Sbjct: 183 VLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAM-CP 241

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++ T++ L+ +  +   +   E+   ++     +     YN +++ Y +          
Sbjct: 242 PNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEI 301

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  GC PD  + N +I+AYG +G  E  EK +      G   ++++  +L  +Y 
Sbjct: 302 FQTM-QRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYA 360

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRGMKP 239
           RAG  ++   ++  M++    P  + YN +I  +G +G  E ME    KM     +  KP
Sbjct: 361 RAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHEDMEALLAKMVKSSSKQTKP 420

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  TY +L+  Y++AG I K + + + +    ++ D   +  ++  Y +     K   + 
Sbjct: 421 DIGTYNTLIQVYAQAGFIPKAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSIL 480

Query: 300 LTMKERHCVPDNITFATMIQA 320
             M E  C  D +T   +  A
Sbjct: 481 KKMLESGCRADAVTARVLFSA 501


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 165/339 (48%), Gaps = 5/339 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK K+ ++   L E +   G+KP+V  Y  ++  Y   G ++ A   I D+      KPD
Sbjct: 205 GKLKKAKEFIGLMEAL---GIKPNVVTYNTIIHGYCSRGRVEGA-RMIFDLMKCRGVKPD 260

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            YTY   I    K  + +    +L +M  +G+  +AVTYNT+IDGY      E       
Sbjct: 261 SYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRD 320

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            MV  G   P + T N +I A      +++ +    E +  G+  D  T NIL   Y R 
Sbjct: 321 KMVREG-LMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRC 379

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   K  ++ D M  +   PT VTY  +I    K G +++ ++ F+K+  +G+ P+ I +
Sbjct: 380 GNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMF 439

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+  +   G + +  ++L++++   V+ D   FN ++    + G VE   EL   MK 
Sbjct: 440 NALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKS 499

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           R   PD+I++ T+I  Y+  G  + A  + ++M+++  N
Sbjct: 500 RGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFN 538



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 156/332 (46%), Gaps = 2/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + E+A +L+  M    +K SV  +  +++   + G L +A   I  M+++   KP+V
Sbjct: 168 KSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALG-IKPNV 226

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ +I       R +    I   M   G++  + TY + I G  K  K EE       
Sbjct: 227 VTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEK 286

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M E G   P   T N++I  Y N GN+E    + ++    G+   + T N+L  +     
Sbjct: 287 MKEIG-LRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDC 345

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D+   ++  M ++   P  VTYNI+I  + + G+++K      +M  +G++P  +TY 
Sbjct: 346 KMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYT 405

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           SL+   SK G + + D +  ++    +  D   FN +I  +   G++++   +   M + 
Sbjct: 406 SLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQM 465

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             VPD +TF T++Q     G  EAA+ L  +M
Sbjct: 466 KVVPDEVTFNTLMQGRCREGKVEAARELIEEM 497



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 153/318 (48%), Gaps = 9/318 (2%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G+K  V +Y  L+ A  +    D+AF   + MK      P V+  + ++    K +R + 
Sbjct: 117 GIKTYV-LYDLLIRACCELKRGDDAFECFDMMKG-KGVIPHVHACNDMLSLFLKSNRTEK 174

Query: 84  IEKILAEMSYLGIECSAVTYNTIID---GYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
              + AEM  + I+ S VT+N +I+     GK KK +E    F  ++E+ G  P++ T N
Sbjct: 175 AWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKE----FIGLMEALGIKPNVVTYN 230

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           ++I  Y + G +E     ++     GVK D  T         + G  ++   +++ M++ 
Sbjct: 231 TIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEI 290

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              PT VTYN +I+ +   G++E   +Y  KM   G+ P   TY  L+ A      + + 
Sbjct: 291 GLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEA 350

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           D I++++    ++ D+  +N +I+ Y + G+V+K   L   M  +   P  +T+ ++I  
Sbjct: 351 DGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYV 410

Query: 321 YNALGMTEAAQNLENKMI 338
            +  G  + A +L  K++
Sbjct: 411 LSKRGRMKQADDLFEKIV 428



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 137/325 (42%), Gaps = 40/325 (12%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E+AS + E M   GL+P+   Y  L+  Y   G L+ AF   + M       
Sbjct: 270 GMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVR-EGLM 328

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V TY++LI +     + D  + I+ EMS  G+   +VTYN +I+GY +    ++  + 
Sbjct: 329 PTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTL 388

Query: 123 FSAMVESG----------------------------------GCHPDIFTLNSMISAYGN 148
              M+  G                                  G  PD+   N++I  +  
Sbjct: 389 HDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCA 448

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +GN+++      E + M V  D  T N L +   R G  +  R +++ M+ R   P  ++
Sbjct: 449 NGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHIS 508

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +I  + K G ++       +M   G  P  +TY +L+    K       + +L+++ 
Sbjct: 509 YNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMI 568

Query: 269 NSDVILDTPFFNCIISAYGQAGDVE 293
           +  +   TP  N  +S     G+VE
Sbjct: 569 SKGI---TPNDNTYLSLIEGIGNVE 590



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 120/281 (42%), Gaps = 37/281 (13%)

Query: 94  LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153
           LGI+ + V Y+ +I    + K+ ++    F  M++  G  P +   N M+S +  S   E
Sbjct: 116 LGIK-TYVLYDLLIRACCELKRGDDAFECFD-MMKGKGVIPHVHACNDMLSLFLKSNRTE 173

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
           K    Y E   M +K+ + T NI+     + G   K +  +  M+     P VVTYN +I
Sbjct: 174 KAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTII 233

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
             +   G +E     F  MK RG+KP+S TY S +S   K G + +   +L +++   + 
Sbjct: 234 HGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLR 293

Query: 274 LDTPFFNCIISAYGQAGDVE--------------------------------KMGE---L 298
                +N +I  Y   G++E                                KM E   +
Sbjct: 294 PTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGI 353

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              M E+  VPD++T+  +I  Y   G  + A  L ++MI+
Sbjct: 354 IKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMIS 394



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L K  + +QA  LFE ++  G+ P + ++ AL+  +  +G +D AF+ + +M  +    
Sbjct: 410 VLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMK-VV 468

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  T++ L++   +  + +   +++ EM   GI+   ++YNT+I GY K     +M+ +
Sbjct: 469 PDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRG---DMKDA 525

Query: 123 FSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           F    E  S G +P + T N++I     +   +  E+   E    G+  +  T   L + 
Sbjct: 526 FRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEG 585

Query: 181 YG 182
            G
Sbjct: 586 IG 587


>gi|410110137|gb|AFV61148.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rubella]
          Length = 440

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 157/349 (44%), Gaps = 39/349 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 57
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 58  ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG     ++ +K +  
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLSMAKEADKLFWG 180

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              MG++  + + N L + YG A ++ +   +   MQ++    TVVTYN +I  +GK   
Sbjct: 181 MRKMGIEPSVVSFNTLLRVYGDAELFGEAIHLFRLMQRKNIEQTVVTYNSMIMIYGKTLE 240

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345


>gi|410110127|gb|AFV61143.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           origanoides]
          Length = 408

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 39/349 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 57
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 58  ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 122 SYSTLLXMYVENKKFLEALSVFSEMREIK-CLLDLXTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 240

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 13  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 72

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 73  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLXMYV 131

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 132 ENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 191

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 192 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 251

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 252 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 286



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 149/340 (43%), Gaps = 39/340 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 72  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLXMY 130

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 131 VENKKFLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 189

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 190 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 246

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 247 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 306

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 307 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFER 366

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +I    +      + E+F  M+     PD+   A ++ AY
Sbjct: 367 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAY 406



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 123/320 (38%), Gaps = 74/320 (23%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L+  Y ++    EA S  ++M+ +  C 
Sbjct: 94  VFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLXMYVENKKFLEALSVFSEMREIK-CL 152

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 153 LDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 212

Query: 123 FSAM----------------------------------VESGGCHPDIFTLNSMISAYGN 148
           F  M                                  ++S G  P+  T +++IS +G 
Sbjct: 213 FRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGK 272

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G +++    + +    GV+ D      +  +Y RAG+    + ++  +++    P  + 
Sbjct: 273 VGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIP 328

Query: 209 YNIVIETFGKAGHIEK-----------------------------------MEEYFKKMK 233
            +  I     AG IE+                                   + E F KM+
Sbjct: 329 RDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMR 388

Query: 234 HRGMKPNSITYCSLVSAYSK 253
             G  P+S     +++AY K
Sbjct: 389 GLGYFPDSNVIAVVLNAYGK 408


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 155/315 (49%), Gaps = 2/315 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   ASL+ E M+  G  P+V  Y  L++ + + G +DEA    N M   S C P
Sbjct: 246 LCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS-CSP 304

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV+TY+ILI    K  R     K+L EM   G E + +TYNT++D   K+ K+ +   + 
Sbjct: 305 DVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYID-AFNL 363

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M+    C P  FT N MI  +   G ++   + +      G   DI T NI+     R
Sbjct: 364 AQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACR 423

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A   D  R +++ M +    P VVTYN ++    KA  +++  E ++ +++ G   + +T
Sbjct: 424 ANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVT 483

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
             +L+    K+  +   + +LR++E +    D   +  +I  + +A  ++K    F  M 
Sbjct: 484 CSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEML 543

Query: 304 ERHCVPDNITFATMI 318
           ++ CVP  IT++ +I
Sbjct: 544 DKGCVPTVITYSIVI 558



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 3/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K +  +QA  L + M   G+ P   VY  ++     +G +D A     DM+   +C P V
Sbjct: 179 KARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR--NCAPSV 236

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+IL+ +  K  R      IL +M   G   + VTYNT+I+G+ K    +E    F+ 
Sbjct: 237 ITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQ 296

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+E+  C PD+FT N +I  Y      +   K   E    G + +  T N L  S  ++G
Sbjct: 297 MLENS-CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSG 355

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            Y    ++   M +R   P+  T+N++I+ F K G ++   E F+ M  RG  P+  TY 
Sbjct: 356 KYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYN 415

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            ++S   +A  I     +L ++  +    D   +N I+S   +A  V++  E++  ++  
Sbjct: 416 IMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNG 475

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               D +T +T+I         + A+ L  +M
Sbjct: 476 GYFLDVVTCSTLIDGLCKSRRLDDAEKLLREM 507



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 140/306 (45%), Gaps = 2/306 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L ++ML    KPS   +  ++  + + G LD A+     M     C PD+YTY+I+I   
Sbjct: 363 LAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTD-RGCLPDIYTYNIMISGA 421

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            + +R D   ++L  M+  G     VTYN+I+ G  KA + +E    +  +  +GG   D
Sbjct: 422 CRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL-RNGGYFLD 480

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T +++I     S  ++  EK   E    G   D+    IL   + +A   DK  +   
Sbjct: 481 VVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFS 540

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M  +   PTV+TY+IVI+   K+  +       K M  RG+ P++I Y S++    K+ 
Sbjct: 541 EMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSD 600

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
              +   + + ++ +        +N ++    +   +++   L   M+   C+PD +T+ 
Sbjct: 601 SYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYN 660

Query: 316 TMIQAY 321
           ++   +
Sbjct: 661 SVFDGF 666



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 147/316 (46%), Gaps = 4/316 (1%)

Query: 5   GKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ  P+  + L + M+  G +P+   Y  L+ +  +SG   +AF+ +  M    DCK
Sbjct: 315 GYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFN-LAQMMLRRDCK 373

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +T++++I    K  + DL  ++   M+  G      TYN +I G  +A + ++    
Sbjct: 374 PSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQL 433

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E+G C PD+ T NS++S    +  +++  + Y      G   D+ T + L     
Sbjct: 434 LERMTEAG-CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLC 492

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++   D    ++  M++    P VV Y I+I  F KA  ++K   +F +M  +G  P  I
Sbjct: 493 KSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVI 552

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  ++    K+  +     +L+ +    V  D   +  +I    ++   ++  EL+  M
Sbjct: 553 TYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLM 612

Query: 303 KERHCVPDNITFATMI 318
           K+  C P  +T+  ++
Sbjct: 613 KQTGCAPTVVTYNVLV 628



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 139/316 (43%), Gaps = 2/316 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M  K  Q + A  LF++M   G  P +  Y  ++S   ++  +D+A   +  M     C 
Sbjct: 385 MFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG-CP 443

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TY+ ++    K  + D   ++   +   G     VT +T+IDG  K+++ ++ E  
Sbjct: 444 PDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKL 503

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E  G  PD+     +I  +  +  ++K   +++E    G    + T +I+     
Sbjct: 504 LREM-ERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLC 562

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++        ++  M +R   P  + Y  VI+   K+   ++  E +K MK  G  P  +
Sbjct: 563 KSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVV 622

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  LV    K   + +   +L  +E+   + DT  +N +   + ++ + +K   LF  M
Sbjct: 623 TYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAM 682

Query: 303 KERHCVPDNITFATMI 318
           K R C P    ++ ++
Sbjct: 683 KSRGCSPTPFMYSLLL 698



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 132/314 (42%), Gaps = 3/314 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G K S      L+SA+ +     EA+    + +    C PD  TYS LI    K   F  
Sbjct: 127 GYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHR-CGLCSPDSITYSTLINGFCKARDFQQ 185

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             ++L EM   GI      YNTII G     + +     +  M  +  C P + T   ++
Sbjct: 186 AYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRN--CAPSVITYTILV 243

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A   S  I        +    G   ++ T N L   + + G  D+   + + M +    
Sbjct: 244 DALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCS 303

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P V TYNI+I+ + K    +   +  ++M   G +PN ITY +L+ +  K+G  +   ++
Sbjct: 304 PDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNL 363

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
            + +   D       FN +I  + + G ++   ELF  M +R C+PD  T+  MI     
Sbjct: 364 AQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACR 423

Query: 324 LGMTEAAQNLENKM 337
               + A+ L  +M
Sbjct: 424 ANRIDDARQLLERM 437



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 2/244 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G + S  T N ++  + + KK +E    F      G C PD  T +++I+ +  + + ++
Sbjct: 127 GYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNH-RCGLCSPDSITYSTLINGFCKARDFQQ 185

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             +  +E    G+       N + K     G  D        MQ R   P+V+TY I+++
Sbjct: 186 AYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-RNCAPSVITYTILVD 244

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
              K+  I       + M   G  PN +TY +L++ + K G + +   +  Q+  +    
Sbjct: 245 ALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSP 304

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           D   +N +I  Y +    +   +L   M +  C P+ IT+ T++ +    G    A NL 
Sbjct: 305 DVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLA 364

Query: 335 NKMI 338
             M+
Sbjct: 365 QMML 368



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 40/160 (25%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK    ++A  L+++M   G  P+V  Y  LV    +   LDEA   +  M+S  
Sbjct: 592 VIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMES-D 650

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C PD                                     TYN++ DG+ K+ + ++ 
Sbjct: 651 GCLPDTV-----------------------------------TYNSVFDGFWKSAEHDKA 675

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKW 158
              F AM +S GC P  F  + +++       +++ ME W
Sbjct: 676 FRLFQAM-KSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIW 714


>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           turbinata]
          Length = 441

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 39/349 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 57
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 62

Query: 58  ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 63  KLCDYSKAISIFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 122

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 241

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 242 HEKANNLIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 301

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 346



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 14  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISI 73

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 74  FSRLKXSG-FXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYV 132

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 133 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 192

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 193 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 252

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 253 QSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKL 287



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 73  IFSRLKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 131

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 132 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 190

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 191 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 247

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 248 LIQEMQSRGVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 307

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 308 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 367

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 368 MIHLLSKYKKYSNVIEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 423



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 147/350 (42%), Gaps = 40/350 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S  ++M+ +  C 
Sbjct: 95  VFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIK-CL 153

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 154 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 213

Query: 123 FSAM----------------------------------VESGGCHPDIFTLNSMISAYGN 148
           F  M                                  ++S G  P+  T +++IS +G 
Sbjct: 214 FRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGVEPNSITYSTIISIWGK 273

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G +++    + +    GV+ D      +  +Y RAG+    + ++  +++    P  + 
Sbjct: 274 VGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIP 329

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
            +  I     AG IE+    F++    G   +   +  ++   SK      V  +  ++ 
Sbjct: 330 RDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVIEVFDKMR 389

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATM 317
                 D+     +++AYG+  + +K  ++++ M+E  CV  D + F  +
Sbjct: 390 GLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVGCVFSDQVHFQML 439


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 145/302 (48%), Gaps = 6/302 (1%)

Query: 34  ALVSAYGQSGLLDEAFSTINDMKSVSDCKP-----DVYTYSILIKSCTKFHRFDLIEKIL 88
           AL+    + G L  A    + ++++          D+YTY+ +I  C    +     +++
Sbjct: 240 ALLKELAKQGYLKRAVEIFDWLRNLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALELV 299

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           AEM   GI+C+  TY+ +++   KA + +  +  +  M+E  GC P++ T N +I  Y  
Sbjct: 300 AEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEE-GCSPNLVTYNILIDVYVK 358

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
               E+  K  +      ++A+++T N +  +  ++G  ++   V + M      P+  T
Sbjct: 359 RCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATT 418

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y  +I  +GK G +EK  E F+ M  RG + N ITY SL+SA  KAG       +  ++ 
Sbjct: 419 YTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMH 478

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
             +   +   FN +I+A    G  EK  ELF  M+ + C PD+IT+  +I AY   G   
Sbjct: 479 KENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWR 538

Query: 329 AA 330
            A
Sbjct: 539 RA 540



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 4/289 (1%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           YT ++S  G    L  A   + +M+S   DC  +V+TYS L+  C K +  DL + +  +
Sbjct: 279 YTTMISQCGSHQQLRRALELVAEMRSRGIDC--NVHTYSALMNVCIKANELDLAQDVYKQ 336

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M   G   + VTYN +ID Y K  ++EE       + E      ++ T N++ISA   SG
Sbjct: 337 MLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTL-EKQAIQAEVRTYNTVISACNKSG 395

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
             E+  K Y +    GVK    T   L  +YG+ G  +K   +   M +R     V+TY+
Sbjct: 396 QPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYS 455

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I    KAG  E   E F KM     KPN +T+ SL++A S  G   K   +  Q++  
Sbjct: 456 SLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQ 515

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
               D+  +  +I+AY + G   +  + F  M+ + C PD   F ++++
Sbjct: 516 GCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLME 564



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 141/291 (48%), Gaps = 5/291 (1%)

Query: 3   MLGKCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           M+ +C   +Q     E+   M S G+  +V  Y+AL++   ++  LD A      M    
Sbjct: 282 MISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLE-E 340

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C P++ TY+ILI    K  +++   K+L  +    I+    TYNT+I    K+ + E+ 
Sbjct: 341 GCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQA 400

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              +  M+ + G  P   T  ++ISAYG  G +EK  + + +    G + ++ T + L  
Sbjct: 401 LKVYEKML-AAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLIS 459

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +  +AG ++    +   M K    P VVT+N +I      GH EK  E F++M+ +G KP
Sbjct: 460 ACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKP 519

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           +SITYC L++AY + G   +      Q++      D   FN ++    Q+G
Sbjct: 520 DSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSG 570



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 124/243 (51%), Gaps = 2/243 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +++ ML +G  P++  Y  L+  Y +    +EA   ++ ++  +  + +V TY+ +I +C
Sbjct: 333 VYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQA-IQAEVRTYNTVISAC 391

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  + +   K+  +M   G++ SA TY  +I  YGK  + E+    F  M+  G C  +
Sbjct: 392 NKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRG-CERN 450

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T +S+ISA   +G  E   + +++ +    K ++ T N L  +    G ++K   + +
Sbjct: 451 VITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFE 510

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            MQ +   P  +TY  +I  + + G   +  + F++M+ +G  P++  + SL+    ++G
Sbjct: 511 QMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSG 570

Query: 256 LIM 258
           +++
Sbjct: 571 VLL 573



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 3/164 (1%)

Query: 178 TKSYGRAGMYDKMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           T    + G + ++R  ++    M+ R     V TY+ ++    KA  ++  ++ +K+M  
Sbjct: 280 TTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLE 339

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G  PN +TY  L+  Y K     +   +L  +E   +  +   +N +ISA  ++G  E+
Sbjct: 340 EGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQ 399

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +++  M      P   T+  +I AY   G  E A  +   MI
Sbjct: 400 ALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMI 443



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 75/178 (42%), Gaps = 10/178 (5%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--------VVTYNIVIETFGKAGH 221
           D   +  L K   + G   +   + D++  R   P+        + TY  +I   G    
Sbjct: 234 DSSAMAALLKELAKQGYLKRAVEIFDWL--RNLEPSHELSSLCDLYTYTTMISQCGSHQQ 291

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           + +  E   +M+ RG+  N  TY +L++   KA  +     + +Q+       +   +N 
Sbjct: 292 LRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNI 351

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +I  Y +    E+  ++  T++++    +  T+ T+I A N  G  E A  +  KM+A
Sbjct: 352 LIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLA 409


>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 478

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 154/333 (46%), Gaps = 5/333 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G +P   VY AL++A+     ++  L +A      MK +
Sbjct: 141 VMGKKGQTRMAMWLFSEMRNSGCRPDSSVYNALITAHLHSKDKAKALIKALGYFEKMKGM 200

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P+V TY+IL+++  +    + +  +  ++    +     TYN ++D YGK     E
Sbjct: 201 QRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNGVMDAYGKNGMIRE 260

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           MES  S M +S  C PDI T N +I +YG   + +KME+ +        +  + T N + 
Sbjct: 261 MESVLSRM-KSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKERPTLPTFNSMI 319

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A   +   SV+  M K  + P  +TY  +I  +G    + K  E F  M   G +
Sbjct: 320 TNYGKARQKENAESVLQKMTKMKYTPNFITYESLIMMYGFCDSVSKAREIFDDMIESGKE 379

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
               T  +++  Y   GL M+ D +     N  ++ D+  +  +  AY +A   + + +L
Sbjct: 380 VKVSTLNAMLDVYCLNGLPMEADLLFDNARNVGLLPDSTTYKLLYKAYTKANMKKLVQKL 439

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
              M     +P+   F   + A+ +L  +   Q
Sbjct: 440 LKHMDRDGIIPNKRFFLDALGAFKSLPASSGNQ 472



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 142/314 (45%), Gaps = 11/314 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           VY+ L+S  G+ G    A    ++M++ S C+PD   Y+ LI +    H  D  + ++  
Sbjct: 134 VYSKLISVMGKKGQTRMAMWLFSEMRN-SGCRPDSSVYNALITA--HLHSKDKAKALIKA 190

Query: 91  MSYL-------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + Y          + + VTYN ++  + +A+   ++ + F  + +S    PDI+T N ++
Sbjct: 191 LGYFEKMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSI-VSPDIYTYNGVM 249

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AYG +G I +ME   +       K DI T N+L  SYG+   +DKM  V   +      
Sbjct: 250 DAYGKNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKER 309

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT+ T+N +I  +GKA   E  E   +KM      PN ITY SL+  Y     + K   I
Sbjct: 310 PTLPTFNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYESLIMMYGFCDSVSKAREI 369

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              +  S   +     N ++  Y   G   +   LF   +    +PD+ T+  + +AY  
Sbjct: 370 FDDMIESGKEVKVSTLNAMLDVYCLNGLPMEADLLFDNARNVGLLPDSTTYKLLYKAYTK 429

Query: 324 LGMTEAAQNLENKM 337
             M +  Q L   M
Sbjct: 430 ANMKKLVQKLLKHM 443



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 22/257 (8%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS-----------GN 151
           Y+ +I   GK  +       FS M  SG C PD    N++I+A+ +S           G 
Sbjct: 135 YSKLISVMGKKGQTRMAMWLFSEMRNSG-CRPDSSVYNALITAHLHSKDKAKALIKALGY 193

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            EKM+       +   + ++ T NIL +++ +A   +++ ++   + +    P + TYN 
Sbjct: 194 FEKMK------GMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNG 247

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           V++ +GK G I +ME    +MK    KP+ IT+  L+ +Y K     K++ + + + +S 
Sbjct: 248 VMDAYGKNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSK 307

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
                P FN +I+ YG+A   E    +   M +    P+ IT+ ++I  Y        A+
Sbjct: 308 ERPTLPTFNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYESLIMMYGFCDSVSKAR 367

Query: 332 NLENKMIAMKENSGKKL 348
            + + MI     SGK++
Sbjct: 368 EIFDDMI----ESGKEV 380



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 41/187 (21%)

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           +L +  GR   + +   V  +MQK R++      Y+ +I   GK G        F +M++
Sbjct: 101 LLFEELGRRDKWLQCLEVFRWMQKQRWYIADSGVYSKLISVMGKKGQTRMAMWLFSEMRN 160

Query: 235 RGMKPNS----------------------------------------ITYCSLVSAYSKA 254
            G +P+S                                        +TY  L+ A+++A
Sbjct: 161 SGCRPDSSVYNALITAHLHSKDKAKALIKALGYFEKMKGMQRCQPNVVTYNILLRAFAQA 220

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
             + +V+++ + ++ S V  D   +N ++ AYG+ G + +M  +   MK   C PD ITF
Sbjct: 221 RNVNQVNALFKDLDQSIVSPDIYTYNGVMDAYGKNGMIREMESVLSRMKSNQCKPDIITF 280

Query: 315 ATMIQAY 321
             +I +Y
Sbjct: 281 NLLIDSY 287



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++M G C    +A  +F+ M+  G +  V    A++  Y  +GL  EA    ++ ++V  
Sbjct: 354 IMMYGFCDSVSKAREIFDDMIESGKEVKVSTLNAMLDVYCLNGLPMEADLLFDNARNVG- 412

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 96
             PD  TY +L K+ TK +   L++K+L  M   GI
Sbjct: 413 LLPDSTTYKLLYKAYTKANMKKLVQKLLKHMDRDGI 448


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 160/316 (50%), Gaps = 5/316 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFD 82
           G  PSV  Y A++ A   + L   A    + M S     P+VYTY+IL+++ C + HR +
Sbjct: 151 GYVPSVLAYNAVLLALSDASL-TSARRFFDSMLS-DGVAPNVYTYNILVRALCGRGHRKE 208

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
            +  IL +M   G   + VTYNT++  + +A + +  E     M+  GG  P++ T NSM
Sbjct: 209 ALS-ILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAER-LVGMMREGGLKPNLVTFNSM 266

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           ++    +G +E   K ++E    G+  D  + N L   Y +AG   +  SV   M ++  
Sbjct: 267 VNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 326

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P VVT+  +I    KAG++E+     ++M+ RG++ N +T+ +L+  + K G +     
Sbjct: 327 MPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALL 386

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
            +R ++   +      +N +I+ Y   G +++  EL   M+ +   PD +T++T+I AY 
Sbjct: 387 AVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 446

Query: 323 ALGMTEAAQNLENKMI 338
               T +A  L  +M+
Sbjct: 447 KNCDTHSAFELNQQML 462



 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 155/307 (50%), Gaps = 2/307 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A   F+ MLSDG+ P+V  Y  LV A    G   EA S + DM+  + C P+V TY+ L+
Sbjct: 174 ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRG-AGCGPNVVTYNTLV 232

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
            +  +    D  E+++  M   G++ + VT+N++++G  KA K E+    F  MV  G  
Sbjct: 233 AAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREG-L 291

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PD  + N+++  Y  +G   +    + E    G+  D+ T   L     +AG  ++  +
Sbjct: 292 APDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVT 351

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  M++R      VT+  +I+ F K G ++      + MK   +KP+ + Y +L++ Y 
Sbjct: 352 LVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYC 411

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
             G + +   +L ++E   +  D   ++ IISAY +  D     EL   M E+  +PD I
Sbjct: 412 MVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAI 471

Query: 313 TFATMIQ 319
           T++++I+
Sbjct: 472 TYSSLIR 478



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 140/319 (43%), Gaps = 8/319 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E A  +F+ M+ +GL P    Y  LV  Y ++G   EA S   +M       
Sbjct: 269 GMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQ-KGIM 327

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV T++ LI    K    +    ++ +M   G++ + VT+  +IDG+ K    ++   +
Sbjct: 328 PDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLA 387

Query: 123 FSAMVESGGCH--PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              M +   C   P +   N++I+ Y   G +++  +  +E    G+K D+ T + +  +
Sbjct: 388 VRGMKQ---CRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISA 444

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y +         +   M ++   P  +TY+ +I        +      FK M   G++P+
Sbjct: 445 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPD 504

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY SL+  + K G +    S+  ++  + V+ D   ++ +I+   ++    +  +L  
Sbjct: 505 EFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLF 564

Query: 301 TMKERHCVPDNITFATMIQ 319
            +     +P N  +  ++ 
Sbjct: 565 KLYHEDPIPANTKYDALMH 583



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 144/343 (41%), Gaps = 17/343 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  L   M   GL+ +   +TAL+  + + G LD+A   +  MK     KP V  Y+ 
Sbjct: 347 ERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCR-IKPSVVCYNA 405

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       R D   ++L EM   G++   VTY+TII  Y K             M+E G
Sbjct: 406 LINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG 465

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T +S+I        +      +     +G++ D  T   L   + + G  +  
Sbjct: 466 -VLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESA 524

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            S+ D M K    P VVTY+++I    K+    + ++   K+ H    P +  Y +L+  
Sbjct: 525 LSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHC 584

Query: 251 YSKA---------------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
             KA               GL+ + D + + + + +  LD   ++ +I  + +AG+V K 
Sbjct: 585 CRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKA 644

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                 M +    P++ +  ++I+     GM   A  +  +++
Sbjct: 645 LSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLL 687



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%), Gaps = 17/314 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   M + GLKP V  Y+ ++SAY ++     AF  +N         PD  TYS 
Sbjct: 417 DEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE-LNQQMLEKGVLPDAITYSS 475

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI+      R      +   M  LG++    TY ++IDG+ K    E   S    MV++G
Sbjct: 476 LIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAG 535

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKME----KWYNEFNLMG-----------VKADIQTLN 175
              PD+ T + +I+    S    + +    K Y+E  +              KA+++++ 
Sbjct: 536 -VLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVL 594

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L K +   G+ ++   V   M  R +      Y+++I    +AG++ K   + K+M   
Sbjct: 595 ALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQG 654

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G  PNS +  SL+    + G++++ D +++Q+ N   + D      +I      G+V+ +
Sbjct: 655 GFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAV 714

Query: 296 GELFLTMKERHCVP 309
            ++   M +   +P
Sbjct: 715 LDVLHGMAKDGLLP 728


>gi|410110135|gb|AFV61147.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rotundifolia]
          Length = 440

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 39/349 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 57
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 62

Query: 58  ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 122

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 241

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 242 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 301

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 346



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 14  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISI 73

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 74  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYV 132

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 133 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 192

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 193 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 252

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 253 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 287



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 147/350 (42%), Gaps = 40/350 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S  ++M+ +  C 
Sbjct: 95  VFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIK-CL 153

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 154 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 213

Query: 123 FSAM----------------------------------VESGGCHPDIFTLNSMISAYGN 148
           F  M                                  ++S G  P+  T +++IS +G 
Sbjct: 214 FRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGK 273

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G +++    + +    GV+ D      +  +Y RAG+    + ++  +++    P  + 
Sbjct: 274 VGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIP 329

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
            +  I     AG IE+    F++    G   N   +  ++   SK      V  +  ++ 
Sbjct: 330 RDTAIHILAGAGRIEEATYVFRQAIDAGEVKNIAVFERMIHLLSKYKKYANVVEVFDKMR 389

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATM 317
                 D+     +++AYG+  + +K  ++++ M+E  CV  D + F  +
Sbjct: 390 GLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEMQEVGCVFSDEVHFQML 439


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 176/374 (47%), Gaps = 44/374 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G CK+   A  +++ M+S+GLKPS+  Y+AL+ A G+          + +M+++   +P+
Sbjct: 206 GFCKE---ALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLG-LRPN 261

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           +YTY+I I+   +  R D    IL  M   G     VTY  +ID    A K ++ +  ++
Sbjct: 262 IYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYT 321

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M  S    PD+ T  +++S +GN G++E ++++++E    G   D+ T  IL ++  ++
Sbjct: 322 KMRASSH-KPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKS 380

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYN---------------------------------- 210
           G  D+   ++D M+ R   P + TYN                                  
Sbjct: 381 GKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSY 440

Query: 211 -IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA--GLIMKVDSILRQV 267
            + I+ +GK G  EK  + F+KMK RG+ P SI  C+  S YS A  G I +   I   +
Sbjct: 441 VLFIDYYGKLGDPEKALDTFEKMKKRGIMP-SIAACN-ASLYSLAEMGRIREAKDIFNDI 498

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
            N  +  D+  +N ++  Y +AG ++K  +L   M    C PD I   ++I      G  
Sbjct: 499 HNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRV 558

Query: 328 EAAQNLENKMIAMK 341
           + A  +  ++  +K
Sbjct: 559 DEAWQMFGRLKDLK 572



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 149/308 (48%), Gaps = 2/308 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E     +  M +DG  P V  YT LV A  +SG +D+AF  ++ M+ V    P+++TY+ 
Sbjct: 349 ETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMR-VRGIVPNLHTYNT 407

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       R D   ++   M  LG+  +A +Y   ID YGK    E+   +F  M +  
Sbjct: 408 LISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKM-KKR 466

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P I   N+ + +    G I + +  +N+ +  G+  D  T N++ K Y +AG  DK 
Sbjct: 467 GIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKA 526

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M      P ++  N +I+T  KAG +++  + F ++K   + P  +TY  L++ 
Sbjct: 527 TKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITG 586

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K G ++K   +   ++ S    +T  FN ++    +   V+   ++F  M   +C PD
Sbjct: 587 LGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPD 646

Query: 311 NITFATMI 318
            +T+ T+I
Sbjct: 647 VLTYNTII 654



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 151/315 (47%), Gaps = 3/315 (0%)

Query: 3    MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            +LG C   E A  LF  M + G  P++  Y  L+ A+G+S  +DE F   N+M     CK
Sbjct: 798  LLG-CNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEM-LCRGCK 855

Query: 63   PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            P++ T++I+I +  K +  +    +  E+       +  TY  +I G  KA + EE    
Sbjct: 856  PNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKI 915

Query: 123  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            F  M +   C P+    N +I+ +G +GN+      +      G++ D+++  IL +   
Sbjct: 916  FEEMPDYQ-CKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLF 974

Query: 183  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
              G  D      + ++     P  V+YN++I   GK+  +E+    F +MK+RG+ P   
Sbjct: 975  MTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELY 1034

Query: 243  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            TY +L+  +  AG++ +   +  +++   +  +   +N +I  + ++G+ ++   +F  M
Sbjct: 1035 TYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKM 1094

Query: 303  KERHCVPDNITFATM 317
                C P+  TFA +
Sbjct: 1095 MIVGCSPNAGTFAQL 1109



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 163/344 (47%), Gaps = 7/344 (2%)

Query: 7    CKQPE--QASLLFEVML-SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            CKQ +   A  LF+    S G  P+ + Y  L+       + + A     +MK+ + C P
Sbjct: 763  CKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKN-AGCCP 821

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            +++TY++L+ +  K  R D + ++  EM   G + + +T+N II    K+    +    +
Sbjct: 822  NIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLY 881

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              ++ SG   P   T   +I     +G  E+  K + E      K +    NIL   +G+
Sbjct: 882  YEII-SGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGK 940

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            AG  +    +   M K    P + +Y I++E     G ++    YF+++K  G+ P++++
Sbjct: 941  AGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVS 1000

Query: 244  YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
            Y  +++   K+  + +  S+  +++N  +  +   +N +I  +G AG V++ G++F  ++
Sbjct: 1001 YNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQ 1060

Query: 304  ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM--IAMKENSG 345
                 P+  T+  +I+ ++  G  + A ++  KM  +    N+G
Sbjct: 1061 FMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAG 1104



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 114/254 (44%), Gaps = 14/254 (5%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK------SVSDC 61
           ++ ++A  LF  M S G+ P+   Y   +  YG+ G  ++A  T   MK      S++ C
Sbjct: 416 RRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAAC 475

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
              +Y       S  +  R    + I  ++   G+   +VTYN ++  Y KA + ++   
Sbjct: 476 NASLY-------SLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATK 528

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             + M+ S GC PDI  +NS+I     +G +++  + +     + +   + T NIL    
Sbjct: 529 LLTEML-SEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGL 587

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+ G   K   +   M++    P  VT+N +++   K   ++   + F +M      P+ 
Sbjct: 588 GKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDV 647

Query: 242 ITYCSLVSAYSKAG 255
           +TY +++    K G
Sbjct: 648 LTYNTIIYGLIKEG 661



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 110/256 (42%), Gaps = 9/256 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK   PE+A   FE M   G+ PS+    A + +  + G + EA    ND+ +     PD
Sbjct: 448 GKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCG-LSPD 506

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY++++K  +K  + D   K+L EM   G E   +  N++ID   KA + +E    F 
Sbjct: 507 SVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFG 566

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + +     P + T N +I+  G  G + K    +      G   +  T N L     + 
Sbjct: 567 RLKDLK-LAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKN 625

Query: 185 GMYD---KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
              D   KM   M  M      P V+TYN +I    K G       ++ +MK + + P+ 
Sbjct: 626 DAVDLALKMFCRMTIMNCS---PDVLTYNTIIYGLIKEGRAGYAFWFYHQMK-KFLSPDH 681

Query: 242 ITYCSLVSAYSKAGLI 257
           +T  +L+    K G +
Sbjct: 682 VTLYTLLPGVVKDGRV 697



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 105/250 (42%), Gaps = 36/250 (14%)

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
           L +M   G   +A +YN +I    +    +E    +  M+ S G  P + T ++++ A G
Sbjct: 180 LGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMI-SEGLKPSMKTYSALMVALG 238

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
              +   +     E   +G++ +I T  I  +  GRAG  D    ++  M+     P VV
Sbjct: 239 RRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVV 298

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY ++I+    AG ++K +E + KM+    KP+ +TY +L                    
Sbjct: 299 TYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITL-------------------- 338

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
                          +S +G  GD+E +   +  M+     PD +T+  +++A    G  
Sbjct: 339 ---------------MSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKV 383

Query: 328 EAAQNLENKM 337
           + A ++ + M
Sbjct: 384 DQAFDMLDVM 393



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 88/202 (43%)

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T N M+      G +E M   ++      +  +  T   + K+    G   +    +  M
Sbjct: 124 TCNYMLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKM 183

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++  F     +YN +I    + G  ++  + +K+M   G+KP+  TY +L+ A  +    
Sbjct: 184 RQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDT 243

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
             +  +L ++E   +  +   +   I   G+AG ++    +  TM++  C PD +T+  +
Sbjct: 244 GTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVL 303

Query: 318 IQAYNALGMTEAAQNLENKMIA 339
           I A  A G  + A+ L  KM A
Sbjct: 304 IDALCAAGKLDKAKELYTKMRA 325


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 153/339 (45%), Gaps = 4/339 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           VM G CK  + E+A LLF  M   G  P+   +  ++    Q   +D+A    ++M++  
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEA-K 179

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           D  PD ++Y ILI    K  + +   K+   M   GI  SAVTYN +I G   A   +E 
Sbjct: 180 DIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F +M  S GC P  FT N +I A+   G +++  +        G   D+ T + L  
Sbjct: 240 LELFKSM-RSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                   D  R +++ M KR   PTVVT N +I    KAG I++  E    M   G  P
Sbjct: 299 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 358

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +TY +LV  + +AG   +   +L  +    +  +   +  ++S   +A  + +   +F
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 418

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             MK   C P+  T+  +I  + + G  +    L  +M+
Sbjct: 419 AQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV 457



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 157/340 (46%), Gaps = 10/340 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  LF+ +L  G+ PS   YT+L+     +   D+A     DM     C P
Sbjct: 20  LAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR-RGCPP 78

Query: 64  DVYTYSILIKSCTKFHRF----DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              TY+++I +  K        DLI+K++ +    G     VTYNT++DG  K+ + EE 
Sbjct: 79  SPVTYNVMIDASCKRGMLEEACDLIKKMIED----GHVPDVVTYNTVMDGLCKSSRVEEA 134

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F+ M E  GC P+  + N++I        I++  + ++E     +  D  +  IL  
Sbjct: 135 LLLFNEM-ERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILID 193

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              +AG  ++   +   M      P+ VTYN+VI     A  +++  E FK M+ +G +P
Sbjct: 194 GLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRP 253

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  T+  L+ A+ K G + +   +L+++ +   + D   ++ +IS       V+    L 
Sbjct: 254 SRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLL 313

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             M +R C P  +T  T+I      G  + A+ + + M++
Sbjct: 314 EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 120/260 (46%), Gaps = 2/260 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  LF+ M S G +PS   +  L+ A+ + G LDEAF  +  M       PDV TYS 
Sbjct: 237 DEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHV-PDVVTYST 295

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       R D    +L +M     + + VT NT+I G  KA + +E      AMV SG
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T N+++  +  +G  E+  +  ++    G+  ++ T   L     +A    + 
Sbjct: 356 Q-SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V   M+     P + TY  +I  F  AG ++   + F +M   G+ P+ + Y +L + 
Sbjct: 415 CGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAE 474

Query: 251 YSKAGLIMKVDSILRQVENS 270
             K+G   +   ILR+   S
Sbjct: 475 LCKSGRSARALEILREGRES 494



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 125/275 (45%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD ++Y ILI    K  + +    +  ++ + G+  S V Y ++I G   A  F++    
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ M    GC P   T N MI A    G +E+      +    G   D+ T N +     
Sbjct: 68  FADMNRR-GCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLC 126

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++   ++   + + M++    P   ++N +I    +   I++  + F +M+ + + P+S 
Sbjct: 127 KSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSW 186

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y  L+   +KAG + +   + +++ +S +      +N +I     A  +++  ELF +M
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + + C P   TF  +I A+   G  + A  L  +M
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRM 281



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 118/261 (45%), Gaps = 8/261 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  L E M+    KP+V     L+    ++G + EA   ++ M S S   PDV TY+ 
Sbjct: 307 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS-SGQSPDVVTYNT 365

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    +  + +   ++L++M   G+  + VTY  ++ G  KA +  E    F+ M +S 
Sbjct: 366 LVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQM-KSS 424

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK- 189
           GC P++FT  ++I  + ++G ++   K + E    G+  D      L     ++G   + 
Sbjct: 425 GCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARA 484

Query: 190 ---MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
              +R   + ++   +   V  Y   ++   +AG +E    + + M   G  P      S
Sbjct: 485 LEILREGRESLRSEAWGDEV--YRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCAS 542

Query: 247 LVSAYSKAGLIMKVDSILRQV 267
           LV+   K+G   +  ++L ++
Sbjct: 543 LVAGLCKSGQGGEARAVLEEI 563



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 85/205 (41%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           PD ++   +I     +G +      + +    GV         L      A  +D  R +
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
              M +R   P+ VTYN++I+   K G +E+  +  KKM   G  P+ +TY +++    K
Sbjct: 68  FADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCK 127

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           +  + +   +  ++E      +    N II    Q   +++  ++F  M+ +   PD+ +
Sbjct: 128 SSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWS 187

Query: 314 FATMIQAYNALGMTEAAQNLENKMI 338
           +  +I      G    A  L  +M+
Sbjct: 188 YGILIDGLAKAGKLNEAYKLFQRML 212



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 3/159 (1%)

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           NE N   V  D  +  IL     +AG  +  R++   +      P+ V Y  +I     A
Sbjct: 2   NERN---VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMA 58

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
              +   E F  M  RG  P+ +TY  ++ A  K G++ +   +++++     + D   +
Sbjct: 59  NSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTY 118

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           N ++    ++  VE+   LF  M+   C P+  +  T+I
Sbjct: 119 NTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTII 157



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 56/142 (39%), Gaps = 35/142 (24%)

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M +R   P   +Y I+I+   KAG +      F+K+ H G+ P+++ Y SL+      GL
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIH-----GL 55

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
            M                              A   +   ELF  M  R C P  +T+  
Sbjct: 56  CM------------------------------ANSFDDARELFADMNRRGCPPSPVTYNV 85

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           MI A    GM E A +L  KMI
Sbjct: 86  MIDASCKRGMLEEACDLIKKMI 107


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 156/323 (48%), Gaps = 6/323 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ LG   +  +A  LFE +  +G +P    Y AL+  Y ++G L +A   +++M+  + 
Sbjct: 299 ILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEK-AG 357

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KPD  TYS+LI +     R++    +L EM    +E ++  Y+ I+  Y   +   E +
Sbjct: 358 VKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASY---RDKGEWQ 414

Query: 121 SSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            SF  +  ++S G  PD    N MI  +G    ++     +      G++ D  T N L 
Sbjct: 415 KSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLI 474

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + ++G ++    +   MQ+R + P + TYNI+I + G+    E++  +  KM+ +G+ 
Sbjct: 475 NCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLL 534

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PNSITY +LV  Y K+G        L  ++++     +  +N +I+AY Q G  E     
Sbjct: 535 PNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNA 594

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
           F  M      P  +   ++I A+
Sbjct: 595 FRLMTTEGLTPSLLALNSLINAF 617



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 159/336 (47%), Gaps = 9/336 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ ++  +A LL +  +   L      Y AL+ A  ++G +++A + ++ M+     +P
Sbjct: 165 LGRSEKLYEAFLLSQRQVLTPL-----TYNALIGACARNGDVEKALNLMSKMRR-DGYQP 218

Query: 64  DVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           D   YS +I+  T+ ++ D  +++K+  E+    IE      N II G+ KA        
Sbjct: 219 DFVNYSSIIQYLTRSNKIDSPILQKLYTEIETDKIEIDGHLMNDIILGFSKAGD-PTRAM 277

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F AM +S G +P   TL ++I A GNSG   + E  + E    G +   +  N L K Y
Sbjct: 278 RFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRAYNALLKGY 337

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G       V+  M+K    P   TY+++I+ +  AG  E      K+M+   ++PNS
Sbjct: 338 VKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNS 397

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             Y  ++++Y   G   K   +L+ ++++ V  D  F+N +I  +G+   ++     F  
Sbjct: 398 YVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFER 457

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M      PD +T+ T+I  +   G    A+ L  +M
Sbjct: 458 MLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEM 493



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 150/333 (45%), Gaps = 4/333 (1%)

Query: 2   VMLG--KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++LG  K   P +A     +  S+GL P      A++ A G SG   EA +   +++  +
Sbjct: 263 IILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRE-N 321

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +P    Y+ L+K   K       E +++EM   G++    TY+ +ID Y  A ++E  
Sbjct: 322 GSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESA 381

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 M E+    P+ +  + ++++Y + G  +K  +   +    GV+ D    N++  
Sbjct: 382 RIVLKEM-EASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMID 440

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           ++G+    D   +  + M      P  VT+N +I    K+G     EE F +M+ RG  P
Sbjct: 441 TFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSP 500

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
              TY  ++++  +     +V   L ++++  ++ ++  +  ++  YG++G      E  
Sbjct: 501 CITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECL 560

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
             +K     P +  +  +I AY   G++E A N
Sbjct: 561 EVLKSTGFKPTSTMYNALINAYAQRGLSELAVN 593



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 153/321 (47%), Gaps = 10/321 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A ++ + M +  ++P+  VY+ ++++Y   G   ++F  + DMKS +  +PD + Y++
Sbjct: 379 ESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKS-NGVQPDRHFYNV 437

Query: 71  LIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +I +  K+    H     E++L+E    GI    VT+NT+I+ + K+ +    E  F  M
Sbjct: 438 MIDTFGKYNCLDHAMATFERMLSE----GIRPDTVTWNTLINCHCKSGRHNMAEELFGEM 493

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            +  G  P I T N MI++ G     E++  + ++    G+  +  T   L   YG++G 
Sbjct: 494 -QQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGR 552

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           +      ++ ++   F PT   YN +I  + + G  E     F+ M   G+ P+ +   S
Sbjct: 553 FSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNS 612

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++A+ +     +  ++L+ ++ +++  D   +  ++ A  +    +K+  ++  M    
Sbjct: 613 LINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVTSG 672

Query: 307 CVPDNITFATMIQAYNALGMT 327
           C PD    A +  A   +  T
Sbjct: 673 CTPDRKARAMLRSALRYMKQT 693


>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           filifolia]
          Length = 439

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 39/349 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 57
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 2   LFDEMRRRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSR 61

Query: 58  ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTT 121

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 240

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 13  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISI 72

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 73  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYV 131

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 132 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 191

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 192 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 251

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 252 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 286



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 72  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 130

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 131 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 189

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 190 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 246

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 247 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 306

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 307 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 366

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 367 MIHLLSKYKKXSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 422


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 169/376 (44%), Gaps = 40/376 (10%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           +++ G C     ++A  LF++M  +G    P+V  Y  ++  + + G   +A S  ++M 
Sbjct: 233 IILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEM- 291

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           +    KPDV TY+++I +  K    D  E +L +M+  G +   VTYN +I GY    + 
Sbjct: 292 TRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRL 351

Query: 117 EEMESSFSAMVESG----------------------------------GCHPDIFTLNSM 142
           +E    F  M   G                                  G  PDI +  ++
Sbjct: 352 KEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTL 411

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           +  Y + G    M   +N     G+ AD +  NIL  +Y + GM D    +   MQ++  
Sbjct: 412 LHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGV 471

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P VVTY+ VI  F + G +    E F +M  RG++PN+  Y S++  +   G ++K   
Sbjct: 472 SPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKE 531

Query: 263 ILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           ++ ++ N  +   D  FFN +I++  + G V    ++F  + +    PD ITF ++I  Y
Sbjct: 532 LVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGY 591

Query: 322 NALGMTEAAQNLENKM 337
             +G  + A  + + M
Sbjct: 592 CLVGKMDKAFKILDAM 607



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 155/336 (46%), Gaps = 3/336 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + ++P+   +LF  +L  GLK      + L+     +   +EA + +    S   C P+V
Sbjct: 169 RARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNV 228

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSF 123
           ++YSI++K             +   M+  G  CS   V YNT+I G+ K  +  +  S F
Sbjct: 229 FSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLF 288

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M   G   PD+ T N +I A   +  ++K E    +    G + D  T N +   Y  
Sbjct: 289 HEMTRQG-VKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYAT 347

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   +   +   M+ R   P +V  N  + +  K G  ++  E F  M  +G KP+ ++
Sbjct: 348 LGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVS 407

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           YC+L+  Y+  G    +  +   ++++ +  D   FN +I AY + G V+    +F  M+
Sbjct: 408 YCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQ 467

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           ++   PD +T++T+I A++ +G    A    N+M+A
Sbjct: 468 QQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVA 503



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 154/358 (43%), Gaps = 38/358 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M S+G+     V+  L+ AY + G++D+A     +M+      PDV TYS +I + 
Sbjct: 427 LFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQ-QGVSPDVVTYSTVISAF 485

Query: 76  TKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
           ++  R  D +EK   +M   GI+ +   Y++II G+       + +   S M+  G   P
Sbjct: 486 SRMGRLTDAMEK-FNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRP 544

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI   NS+I++    G +      ++    +G + D+ T   L   Y   G  DK   ++
Sbjct: 545 DIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKIL 604

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M+       +VTY+ +++ + K G I      F++M+ +G+KPN++TY  +++   +A
Sbjct: 605 DAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRA 664

Query: 255 GLIMKVDS-----------------------------------ILRQVENSDVILDTPFF 279
           G  +                                       + +++   +V       
Sbjct: 665 GRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITIL 724

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           N +I+A  +    E+  ELF T+     +P+  T+  MI      G  E A N+ + M
Sbjct: 725 NTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSM 782



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 144/342 (42%), Gaps = 22/342 (6%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM-KSVSDCKPDVY 66
           +  E  ++L   M   G  P+V  Y+ ++     + +   A      M K    C P+V 
Sbjct: 207 RTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVV 266

Query: 67  TYSILI----------KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            Y+ +I          K+C+ FH          EM+  G++   VTYN IID   KA+  
Sbjct: 267 AYNTVIHGFFKEGETGKACSLFH----------EMTRQGVKPDVVTYNLIIDALCKARAM 316

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           ++ E     M  +G   PD  T N MI  Y   G +++  K + +    G+  +I   N 
Sbjct: 317 DKAELVLRQMTTNGA-QPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNS 375

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
              S  + G   +   + D M  +   P +V+Y  ++  +   G    M   F  MK  G
Sbjct: 376 FLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNG 435

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           +  +   +  L+ AY+K G++     I  +++   V  D   ++ +ISA+ + G +    
Sbjct: 436 IAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAM 495

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           E F  M  R   P+   + ++IQ +   G    A+ L ++MI
Sbjct: 496 EKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMI 537



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 149/371 (40%), Gaps = 38/371 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A L+   M ++G +P    Y  ++  Y   G L EA      MKS     P
Sbjct: 310 LCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKS-RGLIP 368

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++   +  + S  K  R     +I   M+  G +   V+Y T++ GY     F +M   F
Sbjct: 369 NIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLF 428

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           ++M +S G   D    N +I AY   G ++     + E    GV  D+ T + +  ++ R
Sbjct: 429 NSM-KSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSR 487

Query: 184 AG-MYDKMRS-----------------------------------VMDFMQKRFFFPTVV 207
            G + D M                                     V + + K    P +V
Sbjct: 488 MGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIV 547

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            +N VI +  K G +    + F  +   G +P+ IT+ SL+  Y   G + K   IL  +
Sbjct: 548 FFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAM 607

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           E   V  D   ++ ++  Y + G +     LF  M+ +   P+ +T+  M+      G T
Sbjct: 608 EVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRT 667

Query: 328 EAAQNLENKMI 338
            AA+   ++MI
Sbjct: 668 VAARKKFHEMI 678



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 121/282 (42%), Gaps = 16/282 (5%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F+++   G +P V  +T+L+  Y   G +D+AF  ++ M+ V   + D+ TYS L+   
Sbjct: 568 IFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVG-VETDIVTYSTLLDGY 626

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R +    +  EM   G++ + VTY  ++ G  +A +       F  M+ESG     
Sbjct: 627 FKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG----- 681

Query: 136 IFTLNSMISAYG-------NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                  +S YG        +   ++    + +   M VK  I  LN +  +  +    +
Sbjct: 682 ---TTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKE 738

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           + + +   +      P   TY ++I    K G +E     F  M+  G+ P S     ++
Sbjct: 739 EAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRII 798

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
               + G I K  + L +V+   ++L+    + ++S + + G
Sbjct: 799 RMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKG 840


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 153/339 (45%), Gaps = 4/339 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           VM G CK  + E+A LLF  M   G  P+   +  ++    Q   +D+A    ++M++  
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEA-R 179

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           D  PD ++Y ILI    K  + +   K+   M   GI  SAVTYN +I G   A   +E 
Sbjct: 180 DIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F +M  S GC P  FT N +I A+   G +++  +        G   D+ T + L  
Sbjct: 240 LELFKSM-RSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLIS 298

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                   D  R +++ M KR   PTVVT N +I    KAG I++  E    M   G  P
Sbjct: 299 GLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 358

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +TY +LV  + +AG   +   +L  +    +  +   +  ++S   +A  + +   +F
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVF 418

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             MK   C P+  T+  +I  + + G  +    L  +M+
Sbjct: 419 AQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV 457



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 157/340 (46%), Gaps = 10/340 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  LF+ +L  G+ PS   YT+L+     +   D+A     DM     C P
Sbjct: 20  LAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR-RGCPP 78

Query: 64  DVYTYSILIKSCTKFHRF----DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              TY+++I +  K        DLI+K++ +    G     VTYNT++DG  K+ + EE 
Sbjct: 79  SPVTYNVIIDASCKRGMLEEACDLIKKMIED----GHVPDVVTYNTVMDGLCKSGRVEEA 134

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F+ M E  GC P+  + N++I        I++  + ++E     +  D  +  IL  
Sbjct: 135 LLLFNEM-ERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILID 193

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              +AG  ++   +   M      P+ VTYN+VI     A  +++  E FK M+ +G +P
Sbjct: 194 GLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRP 253

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  T+  L+ A+ K G + +   +L+++ +   + D   ++ +IS       V+    L 
Sbjct: 254 SRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLL 313

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             M +R C P  +T  T+I      G  + A+ + + M++
Sbjct: 314 EDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS 353



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 120/260 (46%), Gaps = 2/260 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  LF+ M S G +PS   +  L+ A+ + G +DEAF  +  M       PDV TYS 
Sbjct: 237 DEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHV-PDVVTYST 295

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       R D    +L +M     + + VT NT+I G  KA + +E      AMV SG
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T N+++  +  +G  E+  +  ++    G+  ++ T   L     +A    + 
Sbjct: 356 Q-SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 414

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V   M+     P + TY  +I  F  AG ++   + F +M   G+ P+ + Y +L + 
Sbjct: 415 CGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAE 474

Query: 251 YSKAGLIMKVDSILRQVENS 270
             K+G   +   ILR+   S
Sbjct: 475 LCKSGRSARALEILREGRES 494



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 133/311 (42%), Gaps = 36/311 (11%)

Query: 63  PDVYTYSILIKSCTKFHRF----DLIEKIL------------------------------ 88
           PD ++Y ILI    K  +     DL +K+L                              
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAREL 67

Query: 89  -AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
            A+M+  G   S VTYN IID   K    EE       M+E G   PD+ T N+++    
Sbjct: 68  FADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHV-PDVVTYNTVMDGLC 126

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            SG +E+    +NE   +G   + ++ N +     +    D+   V   M+ R   P   
Sbjct: 127 KSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSW 186

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           +Y I+I+   KAG + +  + F++M   G+ P+++TY  ++     A  + +   + + +
Sbjct: 187 SYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSM 246

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
            +         FN +I A+ + G +++   L   M +   VPD +T++T+I    ++   
Sbjct: 247 RSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARV 306

Query: 328 EAAQNLENKMI 338
           + A++L   M+
Sbjct: 307 DDARHLLEDMV 317



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 8/261 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  L E M+    KP+V     L+    ++G + EA   ++ M S S   PDV TY+ 
Sbjct: 307 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS-SGQSPDVVTYNT 365

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    +  + +   ++L++M   G+  + VTY  ++ G  KA +  E    F+ M +S 
Sbjct: 366 LVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQM-KSS 424

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK- 189
           GC P++FT  ++I  + ++G ++   K + E    G+  D      L     ++G   + 
Sbjct: 425 GCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARA 484

Query: 190 ---MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
              +R   + ++   +   V  Y   ++    AG +E    + + M   G  P      S
Sbjct: 485 LEILREGRESLRSEAWGDEV--YRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCAS 542

Query: 247 LVSAYSKAGLIMKVDSILRQV 267
           LV+   K+G   +  ++L ++
Sbjct: 543 LVAGLCKSGQGGEARAVLEEI 563



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 3/159 (1%)

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           NE N   V  D  +  IL     +AG  +  R +   +      P+ V Y  +I     A
Sbjct: 2   NERN---VSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMA 58

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
              +   E F  M  RG  P+ +TY  ++ A  K G++ +   +++++     + D   +
Sbjct: 59  NSFDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTY 118

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           N ++    ++G VE+   LF  M+   C P+  +  T+I
Sbjct: 119 NTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTII 157



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 63/141 (44%)

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M +R   P   +Y I+I+   KAG +    + F+K+ H G+ P+++ Y SL+     A  
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                 +   +           +N II A  + G +E+  +L   M E   VPD +T+ T
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 317 MIQAYNALGMTEAAQNLENKM 337
           ++      G  E A  L N+M
Sbjct: 121 VMDGLCKSGRVEEALLLFNEM 141


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 159/344 (46%), Gaps = 10/344 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--C 61
           L K K+ + A  L E + ++G  P++  Y AL++   + G L+EA   I+ ++ + D  C
Sbjct: 175 LAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA---IDLLRKIVDNGC 231

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PDV TY+ LI    K  R     K+  EM+  G+    V Y  +I G  +A K  +  S
Sbjct: 232 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASS 291

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +  M  S GC PD+ TL++MI     +G I    + +      G+  +    + L    
Sbjct: 292 VYKTMT-SQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 350

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            +A   D    ++  M+K F  P  +TYNI+I+   K+G +E    +F +M   G KP+ 
Sbjct: 351 CKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDV 410

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY  LVS + KAG       +   + +S    +   +  +IS   +   + K    F  
Sbjct: 411 YTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQH 470

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           MKER C PD+  +++++      G  E    L ++M    E SG
Sbjct: 471 MKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM----ERSG 510



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 123/269 (45%), Gaps = 2/269 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK K+  +A  LF+ M   GL      YTAL+    Q+G + +A S    M S   C P
Sbjct: 245 LGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTS-QGCVP 303

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T S +I    K  R     +I   M   G+  + V Y+ +I G  KA+K +      
Sbjct: 304 DVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEML 363

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M +   C PD  T N +I     SG++E    +++E    G K D+ T NIL   + +
Sbjct: 364 AQM-KKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCK 422

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  D    V D M      P VVTY  +I    K   + K   YF+ MK RG  P+S  
Sbjct: 423 AGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFV 482

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           Y SLV    K+G +     +  ++E S V
Sbjct: 483 YSSLVDGLCKSGKLEGGCMLFDEMERSGV 511



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 158/344 (45%), Gaps = 13/344 (3%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           +++ G C  ++PE+A  +   M  D G+ PS+  +  ++    +SG +  A     +  +
Sbjct: 99  VLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHF-ETTT 157

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFD----LIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113
            + C  D++TY+ ++    K  +      L+EKI A     G   +  TYN +++G  K 
Sbjct: 158 TNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITAN----GCTPTIATYNALLNGLCKM 213

Query: 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
            + EE       +V++G C PD+ T  S+I   G      +  K + E  L G+  D   
Sbjct: 214 GRLEEAIDLLRKIVDNG-CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVC 272

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
              L +   +AG   +  SV   M  +   P VVT + +I+   KAG I      FK M+
Sbjct: 273 YTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSME 332

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            RG+ PN + Y +L+    KA  +     +L Q++ +    DT  +N +I    ++GDVE
Sbjct: 333 ARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVE 392

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                F  M E  C PD  T+  ++  +   G T+AA  + + M
Sbjct: 393 AARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDM 436



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 120/273 (43%), Gaps = 10/273 (3%)

Query: 76  TKFHR--FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
           TK HR   +L++  LA      +E    T+N +I GY  A++ EE  +    M E  G  
Sbjct: 72  TKRHREAGNLLKNELATTFLPDVE----TWNVLITGYCLAREPEEAFAVIREMEEDYGVA 127

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P + T N ++     SG +      +      G   DI T   +     +        ++
Sbjct: 128 PSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVAL 187

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           M+ +      PT+ TYN ++    K G +E+  +  +K+   G  P+ +TY SL+    K
Sbjct: 188 MEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGK 247

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
                +   + +++    ++LDT  +  +I    QAG + +   ++ TM  + CVPD +T
Sbjct: 248 EKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVT 307

Query: 314 FATMIQAYNALGMTEAA----QNLENKMIAMKE 342
            +TMI      G   AA    +++E + +A  E
Sbjct: 308 LSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNE 340



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 73/184 (39%), Gaps = 39/184 (21%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    E A   F+ ML  G KP V  Y  LVS + ++G  D A    +DM S S C 
Sbjct: 384 GLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSS-SHCS 442

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK------- 115
           P+V TY  LI    K  +          M   G    +  Y++++DG  K+ K       
Sbjct: 443 PNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCML 502

Query: 116 FEEMESS---------------------------FSAMVESGGCHPDIFTLNSMISAYGN 148
           F+EME S                           F+A+ + G  HP  +  NS+IS    
Sbjct: 503 FDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHP--YAYNSIISTLIK 560

Query: 149 SGNI 152
           S  +
Sbjct: 561 SAKV 564


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 163/357 (45%), Gaps = 35/357 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A   F  + S G  P    Y AL+  +G++G+  EA S + +M+  ++C PD  TY+ 
Sbjct: 297 DEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMED-NNCPPDAVTYNE 355

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +   ++    ++  M+  GI+ +AVTY T+I+ YG+A + ++  S +  M ESG
Sbjct: 356 LVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESG 415

Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                                             GC P+  T N+M+S  GN G  + ++
Sbjct: 416 CAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVK 475

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           + + E    G + D  T N L  + GR G       + D M +  F P+V TYN ++   
Sbjct: 476 RVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNAL 535

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            + G     E   K MK++G KP+  +Y  ++++Y+K G +  ++ I + + +  +    
Sbjct: 536 ARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSW 595

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                +I A  +   +  M   F  +++    PD + F +M+  ++   M + A  +
Sbjct: 596 MLLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEI 652



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 173/364 (47%), Gaps = 37/364 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+ + L + M  +G+KP+   YT +++AYG++  +D+A S  + MK  S C P+V TY+ 
Sbjct: 367 EEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKE-SGCAPNVCTYNA 425

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K  + + + KIL +M   G   + +T+NT++   G     + ++  F  M +S 
Sbjct: 426 ILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEM-KSC 484

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD  T N++I+A G  G+    EK Y+E    G    + T N L  +  R G +   
Sbjct: 485 GFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTA 544

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGH------IEK-------------------- 224
            SV+  M+ + F P+  +Y++++ ++ K G+      IEK                    
Sbjct: 545 ESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILA 604

Query: 225 ---------MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                    ME  F+ ++  G KP+ + + S++S +S+  +  +   I+  ++   +  D
Sbjct: 605 NFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPD 664

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N ++  Y + G+  K  E+   ++      D I++ T+I+ +   G+   A    +
Sbjct: 665 LVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLS 724

Query: 336 KMIA 339
           +MI+
Sbjct: 725 EMIS 728



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 154/333 (46%), Gaps = 3/333 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPD 64
           +C + E+A  +FE M   GL P++  Y  ++  YG+ G   ++    +++M+S      D
Sbjct: 221 RCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRS-KGLGFD 279

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            +T S +I +C +    D  ++    +   G     VTYN ++  +GKA  + E  S   
Sbjct: 280 EFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMK 339

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E   C PD  T N +++AY  +G  E+     +     G+K +  T   +  +YGRA
Sbjct: 340 EM-EDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRA 398

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              DK  S+ D M++    P V TYN ++   GK    E+M +    MK  G  PN IT+
Sbjct: 399 AQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITW 458

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +++S     G+   V  + +++++     D   FN +I+A G+ G      +++  M E
Sbjct: 459 NTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLE 518

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               P   T+  ++ A    G    A+++   M
Sbjct: 519 AGFTPSVATYNALLNALARRGDWRTAESVIKDM 551



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 165/340 (48%), Gaps = 14/340 (4%)

Query: 5   GKCKQPEQASLLFE-VMLSDGL------KPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           G C   E+A LLFE ++L+ G         +V++   ++    Q  +  + F  I     
Sbjct: 149 GDC---ERAILLFEWLVLNLGTGNVNLDNQAVELMARILGRESQHSIASKLFDVI----P 201

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           + D   DV  Y+ ++ S ++  +++    I  +M+  G+  + VTYN ++D YGK  +  
Sbjct: 202 LDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSW 261

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
                    + S G   D FT +++ISA G  G +++ ++++      G      T N L
Sbjct: 262 NKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNAL 321

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            + +G+AG+Y +  S+M  M+     P  VTYN ++  + +AG  E+       M   G+
Sbjct: 322 LQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGI 381

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           KPN++TY ++++AY +A  + K  S+  Q++ S    +   +N I+   G+    E+M +
Sbjct: 382 KPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMK 441

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +   MK   C P+ IT+ TM+      GM +  + +  +M
Sbjct: 442 ILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEM 481



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 153/337 (45%), Gaps = 3/337 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+  Q   AS LF+V+  D     V  YT ++ +Y + G  + A +    M   S   
Sbjct: 183 ILGRESQHSIASKLFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNE-SGLS 241

Query: 63  PDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY++++    K  R ++ I  +L EM   G+     T +T+I   G+    +E + 
Sbjct: 242 PTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKE 301

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  + +S G  P   T N+++  +G +G   +      E        D  T N L  +Y
Sbjct: 302 FFVGL-KSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAY 360

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            RAG Y++  +++D M +    P  VTY  +I  +G+A  ++K    + +MK  G  PN 
Sbjct: 361 VRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNV 420

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY +++    K     ++  IL  ++      +   +N ++S  G  G  + +  +F  
Sbjct: 421 CTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQE 480

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           MK     PD  TF T+I A    G    A+ + ++M+
Sbjct: 481 MKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEML 517



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 131/285 (45%), Gaps = 2/285 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C     A  +++ ML  G  PSV  Y AL++A  + G    A S I DMK+    KP 
Sbjct: 501 GRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKN-KGFKPS 559

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +YS+++ S  K      I +I  ++    I  S +   T+I    K +    ME +F 
Sbjct: 560 ETSYSLILNSYAKGGYVKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQ 619

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           A+ +  G  PD+   NSM+S +      ++  +  +     G++ D+ T N L   Y R 
Sbjct: 620 AL-QKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARG 678

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   K   ++  +Q       +++YN VI+ F + G + +      +M  RG++P  +TY
Sbjct: 679 GECWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTY 738

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
            + V  Y+  G+  ++D +L  +   D   +   +  ++  Y +A
Sbjct: 739 NTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKA 783


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 158/320 (49%), Gaps = 2/320 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G  P++  Y  ++    ++ LLDEA      M       PD+YTY ILI       
Sbjct: 241 MGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVD-KGLVPDLYTYDILINGFCMEK 299

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R    + +L EM  +G++   +TYN +IDG+ +    E+       MV + G   ++   
Sbjct: 300 RSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMV-ACGIEANLIIW 358

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N++++    +G +EK  +   E    GV+ D QT ++L + + R     +   ++D M+K
Sbjct: 359 NTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 418

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R   PTV+TY+++I    + G+++      ++M   G+KPN++ Y +L++A++K G + +
Sbjct: 419 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEE 478

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              IL ++    ++ D   +N +I  + +A  +E+     + M ER   P+  T+   I 
Sbjct: 479 SRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFID 538

Query: 320 AYNALGMTEAAQNLENKMIA 339
            Y+  G  E A    N+M++
Sbjct: 539 GYSKAGEMEIADRYFNEMLS 558



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 162/341 (47%), Gaps = 5/341 (1%)

Query: 1   MVMLGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G C+    A    L + M    L P+V  Y+ +++   + G L    + + +M  +
Sbjct: 395 LLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREM-VM 453

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +  KP+   Y+ L+ +  K  R +    IL  M   GI      YN++I G+ KAK+ EE
Sbjct: 454 NGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEE 513

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             +    M+E     P+  T  + I  Y  +G +E  ++++NE    GV  ++     L 
Sbjct: 514 ARTYLMEMLERR-LRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALI 572

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           + + + G   +  SV  F+  R     V TY+++I    + G + +    F +++ +G+ 
Sbjct: 573 EGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLL 632

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN+ TY SL+S   K G + K   +L ++    +  D   +N +I    +AG++E+   L
Sbjct: 633 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNL 692

Query: 299 FLTMKERHCVPDNITFATMIQAY-NALGMTEAAQNLENKMI 338
           F  ++ R   P+ +T+A M+  Y  +   T A Q LE  ++
Sbjct: 693 FDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLL 733



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 160/336 (47%), Gaps = 5/336 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+    +A  +F  +LS  +   V  Y+ L+    ++G + EAF   ++++      
Sbjct: 574 GHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQE-KGLL 632

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+ +TY+ LI    K    D   ++L EM   GI    VTYN +IDG  KA + E  ++ 
Sbjct: 633 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNL 692

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F   +E  G  P+  T  +M+  Y  S N     +   E  L GV  D    N++     
Sbjct: 693 FDD-IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCC 751

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +   ++K   +   M ++ F  TV ++N +IE + K+G +++     ++M  +   PN +
Sbjct: 752 KEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHV 810

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+    KAG++ +   +  +++  +V+     +  ++  Y   G++ ++  LF  M
Sbjct: 811 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 870

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +   PD +T+  MI AY   G    A  L+++++
Sbjct: 871 VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEIL 906



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 164/370 (44%), Gaps = 38/370 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +C   +  + +   M+ +GLKP+  VYT L++A+ + G ++E+   +  M+      P
Sbjct: 435 LCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMRE-QGILP 493

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV+ Y+ LI    K  R +     L EM    +  +A TY   IDGY KA + E  +  F
Sbjct: 494 DVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYF 553

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M+ S G  P++    ++I  +   GN+ +    +       V  D+QT ++L     R
Sbjct: 554 NEML-SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 612

Query: 184 -----------------------------------AGMYDKMRSVMDFMQKRFFFPTVVT 208
                                               G  DK   +++ M  +   P +VT
Sbjct: 613 NGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVT 672

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YNI+I+   KAG IE+ +  F  ++ RG+ PN +TY ++V  Y K+        +L ++ 
Sbjct: 673 YNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEML 732

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              V  D   +N I++   +    EK  +LF  M E+      ++F T+I+ Y   G  +
Sbjct: 733 LRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG-FASTVSFNTLIEGYCKSGKLQ 791

Query: 329 AAQNLENKMI 338
            A +L  +MI
Sbjct: 792 EANHLLEEMI 801



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 160/334 (47%), Gaps = 3/334 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + E A   F  MLS G+ P+V +YTAL+  + + G + EAFS    + S    + DV
Sbjct: 542 KAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ-DV 600

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TYS+LI   ++  +      I +E+   G+  +A TYN++I G  K    ++       
Sbjct: 601 QTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEE 660

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M   G  +PDI T N +I     +G IE+ +  +++    G+  +  T   +   Y ++ 
Sbjct: 661 MCIKG-INPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSK 719

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
                  +++ M  R   P    YN+++    K    EK  + F++M  +G   +++++ 
Sbjct: 720 NPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFN 778

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L+  Y K+G + + + +L ++     I +   +  +I    +AG + +   L+L M+ER
Sbjct: 779 TLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQER 838

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           + +P   T+ +++  Y+ +G       L  +M+A
Sbjct: 839 NVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVA 872



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 157/325 (48%), Gaps = 7/325 (2%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+  +A L+   M+  GLKP    Y AL+  + + G +++AF   ++M +    + ++  
Sbjct: 299 KRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACG-IEANLII 357

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           ++ L+    K  + +   +I+ EM   G+E  + TY+ +I+G+ +    + M  +F  + 
Sbjct: 358 WNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRG---QNMARAFELLD 414

Query: 128 E--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           E       P + T + +I+     GN++       E  + G+K +      L  ++ + G
Sbjct: 415 EMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEG 474

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             ++ R +++ M+++   P V  YN +I  F KA  +E+   Y  +M  R ++PN+ TY 
Sbjct: 475 RVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYG 534

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           + +  YSKAG +   D    ++ +  V+ +   +  +I  + + G+V +   +F  +  R
Sbjct: 535 AFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSR 594

Query: 306 HCVPDNITFATMIQAYNALG-MTEA 329
             + D  T++ +I   +  G M EA
Sbjct: 595 RVLQDVQTYSVLIHGLSRNGKMHEA 619



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 153/335 (45%), Gaps = 5/335 (1%)

Query: 5    GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            G CK  + E+A  LF+ +   GL P+   Y A+V  Y +S     AF  + +M  +    
Sbjct: 679  GLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM-LLRGVP 737

Query: 63   PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            PD + Y++++  C K  +F+    +  EM   G   S V++NT+I+GY K+ K +E    
Sbjct: 738  PDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEANHL 796

Query: 123  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
               M+E     P+  T  S+I     +G + + ++ + E     V    +T   L   Y 
Sbjct: 797  LEEMIEKQFI-PNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYH 855

Query: 183  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
              G   ++ ++ + M  +   P  +TY ++I+ + + G++ +  +   ++  +GM  +  
Sbjct: 856  NIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVA 915

Query: 243  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
             Y +L+ A  K     +V  +L ++  S   L  P  + I   +  AG++++  E+  +M
Sbjct: 916  AYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSM 975

Query: 303  KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   V +  +   ++        +E + NL  +M
Sbjct: 976  VKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQM 1010



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 1/223 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S ++ N+++    K  K E     F  M  +    PD++T  +MISA+   GN++  ++ 
Sbjct: 179 SLLSCNSLLGDLLKGNKVELFWKVFDGMC-AHKVLPDVYTYTNMISAHCKVGNVKDAKRV 237

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             E    G   ++ T N++     RA + D+   +   M  +   P + TY+I+I  F  
Sbjct: 238 LLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCM 297

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
                + +    +M   G+KP  ITY +L+  + + G I +   I  ++    +  +   
Sbjct: 298 EKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLII 357

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +N +++   +AG +EK  E+   M E+   PD+ T++ +I+ +
Sbjct: 358 WNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGH 400



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 143/320 (44%), Gaps = 4/320 (1%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P+  ++  L+ +Y + G L EA +     K+  + +P + + + L+    K ++ +L  K
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNF-EFRPSLLSCNSLLGDLLKGNKVELFWK 201

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +   M    +     TY  +I  + K    ++ +     M E  GC P++ T N +I   
Sbjct: 202 VFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEK-GCSPNLVTYNVIIGGL 260

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +  +++  +        G+  D+ T +IL   +       + + ++  M      P  
Sbjct: 261 CRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEP 320

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           +TYN +I+ F + G IE+      +M   G++ N I + +L++   KAG + K   I+++
Sbjct: 321 ITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQE 380

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +    V  D+  ++ +I  + +  ++ +  EL   MK+R   P  +T++ +I      G 
Sbjct: 381 MMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGN 440

Query: 327 TEAAQNLENKMI--AMKENS 344
            +    +  +M+   +K N+
Sbjct: 441 LQGTNAILREMVMNGLKPNA 460


>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
 gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
          Length = 546

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 167/323 (51%), Gaps = 12/323 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A+ LF  + + G+ P   +Y ++++ YG++    EA   + +MK  +   
Sbjct: 104 LAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKE-AGLM 162

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  +Y+ILI +  +  ++   +++  EM   GI+    T N +ID YGK +   + E  
Sbjct: 163 PDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEEL 222

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM----GVKADIQTLNILT 178
           F +M ++ G   ++ T N+MI  Y  +   E + + +N F  M    GV+ ++ T N + 
Sbjct: 223 FWSMSKTLGIQQNVVTYNTMIKVYKEA---ELLSEAFNVFYYMQNKGGVEPNVITYNTIL 279

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             +G    ++K   ++  MQ+R   P  VTY+ +I  +GK G  ++    FK ++ +G +
Sbjct: 280 FLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFE 339

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            + I Y S++  Y +AGL+     +L +++  D++   P  +  IS   +A  +E+  +L
Sbjct: 340 MDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIV---P-RDTAISILAKAEKLEEAAKL 395

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
           +    E   + +++T+ +MIQ +
Sbjct: 396 YWRSHEAGEIKESVTYKSMIQLF 418



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 165/330 (50%), Gaps = 4/330 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + +Q E A  L   M+   L P    ++ L+S YG++  L++A   + +M++    KPD+
Sbjct: 37  RARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEA-GGIKPDL 95

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             +S LI+   K   +     + +++   GI    V YN++I+ YGKAK ++E +   + 
Sbjct: 96  VIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAE 155

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M E+ G  PD  +   +I+AY  S    + ++ + E    G++ D+ T N++   YG+  
Sbjct: 156 MKEA-GLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLE 214

Query: 186 MYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNSIT 243
           M      +   M K       VVTYN +I+ + +A  + +    F  M+++ G++PN IT
Sbjct: 215 MVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVIT 274

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +++  +       K   ++R+++   +  +   ++ +IS YG+ G  ++   LF T++
Sbjct: 275 YNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLR 334

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           E+    D I + +MI  Y   G+   A+ L
Sbjct: 335 EKGFEMDEILYQSMIVVYERAGLVAHAKRL 364



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 116/240 (48%), Gaps = 2/240 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G   S   YN ++    +A+++E  E     MVE     PD FT +++IS YG +  +E 
Sbjct: 20  GYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKD-LVPDKFTFSTLISGYGRANRLED 78

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
              W  E    G+K D+   + L +  G+   Y K  S+   ++     P  V YN +I 
Sbjct: 79  AMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMIN 138

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +GKA   ++ +    +MK  G+ P++++Y  L++AY+++   ++   +  +++   + L
Sbjct: 139 LYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQL 198

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-ITFATMIQAYNALGMTEAAQNL 333
           D    N +I  YG+   V    ELF +M +   +  N +T+ TMI+ Y    +   A N+
Sbjct: 199 DVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNV 258



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 150/351 (42%), Gaps = 33/351 (9%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K  ++A  L   M   GL P    YT L++AY +S    EA     +MK+    +
Sbjct: 139 LYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKT-KGIQ 197

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMS-YLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            DV T +++I    K       E++   MS  LGI+ + VTYNT+I  Y +A+   E  +
Sbjct: 198 LDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFN 257

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M   GG  P++ T N+++  +G +   EK  +   +    G++ +  T + L   Y
Sbjct: 258 VFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIY 317

Query: 182 GRAGMYDKMRSVMDFMQKRFF-------------------------------FPTVVTYN 210
           G+ G YD+   +   ++++ F                                P +V  +
Sbjct: 318 GKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRD 377

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             I    KA  +E+  + + +    G    S+TY S++  + +         +   +  S
Sbjct: 378 TAISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFVRNKRSKNAIDVFENMRES 437

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             + D+     +++AYGQ   +E   +L+L M+ER C  +      M++ Y
Sbjct: 438 GFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLY 488



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 137/305 (44%), Gaps = 38/305 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P ++ Y++++K+  +  +++L E ++ EM    +     T++T+I GYG+A + E+    
Sbjct: 23  PSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGW 82

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E+GG  PD+   +++I   G   +  K    +++    G+  D    N +   YG
Sbjct: 83  LQEM-EAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYG 141

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTY--------------------------------- 209
           +A  Y + + ++  M++    P  V+Y                                 
Sbjct: 142 KAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVT 201

Query: 210 --NIVIETFGKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
             N++I+ +GK   +   EE F  M K  G++ N +TY +++  Y +A L+ +  ++   
Sbjct: 202 TCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYY 261

Query: 267 VEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++N   V  +   +N I+  +G     EK   L   M++R   P+ +T++T+I  Y   G
Sbjct: 262 MQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTG 321

Query: 326 MTEAA 330
             + A
Sbjct: 322 KYDRA 326



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 1/152 (0%)

Query: 187 YDKMRSVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           + +  ++ D+M +K  + P++  YN+V++   +A   E  E    +M  + + P+  T+ 
Sbjct: 5   WQRSLALHDWMIEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFS 64

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L+S Y +A  +      L+++E   +  D   F+ +I   G+  D  K   LF  +K  
Sbjct: 65  TLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKAS 124

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              PD + + +MI  Y      + AQ L  +M
Sbjct: 125 GIAPDKVIYNSMINLYGKAKFYKEAQGLLAEM 156



 Score = 37.7 bits (86), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 73/160 (45%), Gaps = 5/160 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           +L K ++ E+A+ L+      G +K SV  Y +++  + ++     A     +M+  S  
Sbjct: 382 ILAKAEKLEEAAKLYWRSHEAGEIKESV-TYKSMIQLFVRNKRSKNAIDVFENMRE-SGF 439

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PD  T  +L+ +  +  + +  EK+  +M   G       +  ++  YG A+K  E E 
Sbjct: 440 LPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAED 499

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
            F+A+   G    +++   +MI  Y  +  + +  + ++E
Sbjct: 500 MFAALKLEGLDGDELYL--TMIRIYERASKLNEASRLFSE 537


>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
 gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
          Length = 546

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 167/323 (51%), Gaps = 12/323 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A+ LF  + + G+ P   +Y ++++ YG++    EA   + +MK  +   
Sbjct: 104 LAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKE-AGLM 162

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  +Y+ILI +  +  ++   +++  EM   GI+    T N +ID YGK +   + E  
Sbjct: 163 PDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLEMVRDAEEL 222

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM----GVKADIQTLNILT 178
           F +M ++ G   ++ T N+MI  Y  +   E + + +N F  M    GV+ ++ T N + 
Sbjct: 223 FWSMSKTLGIQQNVVTYNTMIKVYKEA---ELLSEAFNVFYYMQNKGGVEPNVITYNTIL 279

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             +G    ++K   ++  MQ+R   P  VTY+ +I  +GK G  ++    FK ++ +G +
Sbjct: 280 FLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLREKGFE 339

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            + I Y S++  Y +AGL+     +L +++  D++   P  +  IS   +A  +E+  +L
Sbjct: 340 MDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIV---P-RDTAISILAKAEKLEEAAKL 395

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
           +    E   + +++T+ +MIQ +
Sbjct: 396 YWRSHEAGEIKESVTYKSMIQLF 418



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 165/330 (50%), Gaps = 4/330 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + +Q E A  L   M+   L P    ++ L+S YG++  L++A   + +M++    KPD+
Sbjct: 37  RARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEA-GGIKPDL 95

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             +S LI+   K   +     + +++   GI    V YN++I+ YGKAK ++E +   + 
Sbjct: 96  VIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAE 155

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M E+ G  PD  +   +I+AY  S    + ++ + E    G++ D+ T N++   YG+  
Sbjct: 156 MKEA-GLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGKLE 214

Query: 186 MYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNSIT 243
           M      +   M K       VVTYN +I+ + +A  + +    F  M+++ G++PN IT
Sbjct: 215 MVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPNVIT 274

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +++  +       K   ++R+++   +  +   ++ +IS YG+ G  ++   LF T++
Sbjct: 275 YNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFKTLR 334

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           E+    D I + +MI  Y   G+   A+ L
Sbjct: 335 EKGFEMDEILYQSMIVVYERAGLVAHAKRL 364



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 116/240 (48%), Gaps = 2/240 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G   S   YN ++    +A+++E  E     MVE     PD FT +++IS YG +  +E 
Sbjct: 20  GYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKD-LVPDKFTFSTLISGYGRANRLED 78

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
              W  E    G+K D+   + L +  G+   Y K  S+   ++     P  V YN +I 
Sbjct: 79  AMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMIN 138

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +GKA   ++ +    +MK  G+ P++++Y  L++AY+++   ++   +  +++   + L
Sbjct: 139 LYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQL 198

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-ITFATMIQAYNALGMTEAAQNL 333
           D    N +I  YG+   V    ELF +M +   +  N +T+ TMI+ Y    +   A N+
Sbjct: 199 DVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNV 258



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 150/351 (42%), Gaps = 33/351 (9%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K  ++A  L   M   GL P    YT L++AY +S    EA     +MK+    +
Sbjct: 139 LYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKT-KGIQ 197

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMS-YLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            DV T +++I    K       E++   MS  LGI+ + VTYNT+I  Y +A+   E  +
Sbjct: 198 LDVTTCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFN 257

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M   GG  P++ T N+++  +G +   EK  +   +    G++ +  T + L   Y
Sbjct: 258 VFYYMQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIY 317

Query: 182 GRAGMYDKMRSVMDFMQKRFF-------------------------------FPTVVTYN 210
           G+ G YD+   +   ++++ F                                P +V  +
Sbjct: 318 GKTGKYDRAAFLFKTLREKGFEMDEILYQSMIVVYERAGLVAHAKRLLEELKQPDIVPRD 377

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             I    KA  +E+  + + +    G    S+TY S++  + +         +   +  S
Sbjct: 378 TAISILAKAEKLEEAAKLYWRSHEAGEIKESVTYKSMIQLFMRNKRSKNAIDVFENMRES 437

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             + D+     +++AYGQ   +E   +L+L M+ER C  +      M++ Y
Sbjct: 438 GFLPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLY 488



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 137/305 (44%), Gaps = 38/305 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P ++ Y++++K+  +  +++L E ++ EM    +     T++T+I GYG+A + E+    
Sbjct: 23  PSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGW 82

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E+GG  PD+   +++I   G   +  K    +++    G+  D    N +   YG
Sbjct: 83  LQEM-EAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMINLYG 141

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTY--------------------------------- 209
           +A  Y + + ++  M++    P  V+Y                                 
Sbjct: 142 KAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTKGIQLDVT 201

Query: 210 --NIVIETFGKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
             N++I+ +GK   +   EE F  M K  G++ N +TY +++  Y +A L+ +  ++   
Sbjct: 202 TCNMMIDVYGKLEMVRDAEELFWSMSKTLGIQQNVVTYNTMIKVYKEAELLSEAFNVFYY 261

Query: 267 VEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++N   V  +   +N I+  +G     EK   L   M++R   P+ +T++T+I  Y   G
Sbjct: 262 MQNKGGVEPNVITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTG 321

Query: 326 MTEAA 330
             + A
Sbjct: 322 KYDRA 326



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 1/152 (0%)

Query: 187 YDKMRSVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           + +  ++ D+M +K  + P++  YN+V++   +A   E  E    +M  + + P+  T+ 
Sbjct: 5   WQRSLALHDWMIEKGGYAPSIFAYNVVLKNVLRARQWELAEGLVLEMVEKDLVPDKFTFS 64

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L+S Y +A  +      L+++E   +  D   F+ +I   G+  D  K   LF  +K  
Sbjct: 65  TLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIELAGKVKDYSKATSLFSKLKAS 124

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              PD + + +MI  Y      + AQ L  +M
Sbjct: 125 GIAPDKVIYNSMINLYGKAKFYKEAQGLLAEM 156



 Score = 37.7 bits (86), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 73/160 (45%), Gaps = 5/160 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           +L K ++ E+A+ L+      G +K SV  Y +++  + ++     A     +M+  S  
Sbjct: 382 ILAKAEKLEEAAKLYWRSHEAGEIKESV-TYKSMIQLFMRNKRSKNAIDVFENMRE-SGF 439

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PD  T  +L+ +  +  + +  EK+  +M   G       +  ++  YG A+K  E E 
Sbjct: 440 LPDSETTVVLLAAYGQLRQLEDAEKLYLDMRERGCTLEKEVHFQMLKLYGDARKIREAED 499

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
            F+A+   G    +++   +MI  Y  +  + +  + ++E
Sbjct: 500 MFAALKLEGLDGDELYL--TMIRIYERASKLNEASRLFSE 537


>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
 gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
          Length = 521

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 159/370 (42%), Gaps = 40/370 (10%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           P    +   V+     +P +  Y  L+ AYG+S  +++A  T N M+    C P+  T+ 
Sbjct: 85  PRVTQMCEWVLQGTTFRPDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEAL-CVPNEETFG 143

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           +LI        F+  E++  +M   G     +  NT +     AK++   E+ F  + E 
Sbjct: 144 VLINGYRLAGSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDL-EK 202

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY-- 187
             C P+I T N MI  YG +G   K E  Y          +I T   L  ++ R G+Y  
Sbjct: 203 YECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYRE 262

Query: 188 -----DKMRS----------------------------VMDFMQKRFFFPTVVTYNIVIE 214
                DK++                             +   MQ+   FP  V++NI+I 
Sbjct: 263 AERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILIN 322

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +G+AG  E  E+ FK M+  G  PN  +   L+SAY++AG + + + ++  +E      
Sbjct: 323 AYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKP 382

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTM---KERHCVPDNITFATMIQAYNALGMTEAAQ 331
           DT  +N +I+AYG +G  E M  L   M     +   PD  T+ T+IQ Y   G    A+
Sbjct: 383 DTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAE 442

Query: 332 NLENKMIAMK 341
            L   +  +K
Sbjct: 443 ELFQGLARLK 452



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 160/308 (51%), Gaps = 5/308 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V+ GK  +P +A +L+  M      P++  +TAL++A+ + GL  EA    + ++   D
Sbjct: 216 IVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYREAERYFDKLQEF-D 274

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KPD Y Y+ L+++ ++        +I   M   G     V++N +I+ YG+A  +E+ E
Sbjct: 275 YKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAE 334

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F +M +S G  P++ +   ++SAY  +G +E+ E+  +     G K D    N L  +
Sbjct: 335 KIFKSM-QSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINA 393

Query: 181 YGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
           YG +G ++ M +++  M K   +   P + TYN +I+ + +AG I + EE F+ +    +
Sbjct: 394 YGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKL 453

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P++ T+ +L+  Y+K  L  K  SIL+++  S    D      + SA      VE++ +
Sbjct: 454 VPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLFSACRSPEQVEQVTQ 513

Query: 298 LFLTMKER 305
           L  +++ R
Sbjct: 514 LMESLQGR 521



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 143/321 (44%), Gaps = 5/321 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L   K+  +A  LF  +     +P++D Y  ++  YG++G   +A      M+    C 
Sbjct: 183 VLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAM-CP 241

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++ T++ L+ +  +   +   E+   ++     +     YN +++ Y +          
Sbjct: 242 PNICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEI 301

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  GC PD  + N +I+AYG +G  E  EK +      G   ++++  +L  +Y 
Sbjct: 302 FQTM-QRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYA 360

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRGMKP 239
           RAG  ++   ++  M++    P  + YN +I  +G +G  E ME    KM     +  KP
Sbjct: 361 RAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKP 420

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  TY +L+  Y++AG I + + + + +    ++ D   +  ++  Y +     K   + 
Sbjct: 421 DIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSIL 480

Query: 300 LTMKERHCVPDNITFATMIQA 320
             M E  C  D +T   +  A
Sbjct: 481 KKMLESGCRADAVTARVLFSA 501


>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 680

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 164/359 (45%), Gaps = 39/359 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + KQ   A  LF+ M    L P    Y+ L++++G+ G+ D A S +  M+       D+
Sbjct: 169 RAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQ-DRVSGDL 227

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             YS LI+   +   +     I + +   GI    V YN++I+ YGKAK F+E       
Sbjct: 228 VLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKE 287

Query: 126 MVESG----------------------------------GCHPDIFTLNSMISAYGNSGN 151
           M E+G                                   C  D+ T N MI  YG    
Sbjct: 288 MNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDM 347

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++ ++ +     M ++ ++ + N + + YG A ++ +   +   MQ++     VVTYN 
Sbjct: 348 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT 407

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ +GK    EK     ++M+ RG++PN+ITY +++S + KAG + +  ++ +++ +S 
Sbjct: 408 MIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSG 467

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           V +D   +  +I AY + G +     L   +K    +PDNI   T I      G TE A
Sbjct: 468 VEIDQVLYQTMIVAYERVGLMGHAKRLLHELK----LPDNIPRETAITILAKAGSTEEA 522



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 158/356 (44%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P +  Y ++++ YG++ L  EA   I +M   +   P+  +YS L+   
Sbjct: 249 IFSRLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNE-AGVSPNTVSYSTLLSVY 307

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            + H+F     + AEM  +       T N +ID YG+    +E +  F ++       P+
Sbjct: 308 VENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSL-RKMDIEPN 366

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG +   E   +  + F LM    ++ ++ T N + K YG+   ++K  +
Sbjct: 367 VVSYNTILRVYGEA---ELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATN 423

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GKAG +++    F+K++  G++ + + Y +++ AY 
Sbjct: 424 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYE 483

Query: 253 KAGLIMKVDSIL-------------------------------RQVENSDVILDTPFFNC 281
           + GL+     +L                               RQ   S  + D   F C
Sbjct: 484 RVGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTEEATWVFRQAFESGEVKDISVFGC 543

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I+ Y +      + E+F  M+     PD+   A ++ AY      E A  +  +M
Sbjct: 544 MINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEKADTVYREM 599



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/344 (20%), Positives = 144/344 (41%), Gaps = 69/344 (20%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF------ 116
           P V+ Y++++++  +  +F +   +  EM    +     TY+T+I  +GK   F      
Sbjct: 155 PSVFAYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSW 214

Query: 117 -EEMESS--------FSAMVE-------------------SGGCHPDIFTLNSMISAYGN 148
            ++ME          +S ++E                     G  PD+   NSMI+ YG 
Sbjct: 215 LQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGK 274

Query: 149 SGNIEKMEKWYNEFNLMGVKA-----------------------------------DIQT 173
           +   ++      E N  GV                                     D+ T
Sbjct: 275 AKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTT 334

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            NI+   YG+  M  +   +   ++K    P VV+YN ++  +G+A    +    F+ M+
Sbjct: 335 CNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQ 394

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            + ++ N +TY +++  Y K     K  ++++++++  +  +   ++ IIS +G+AG ++
Sbjct: 395 RKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLD 454

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +   LF  ++      D + + TMI AY  +G+   A+ L +++
Sbjct: 455 RAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHEL 498



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 143/334 (42%), Gaps = 37/334 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  +    ++P+V  Y  ++  YG++ L  EA      M+   D + +
Sbjct: 343 GQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQR-KDIEQN 401

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ +IK   K    +    ++ EM   GIE +A+TY+TII  +GKA K +   + F 
Sbjct: 402 VVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQ 461

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-------------------- 164
            +  S G   D     +MI AY   G +   ++  +E  L                    
Sbjct: 462 KL-RSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGSTE 520

Query: 165 -----------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                       G   DI     +   Y R   Y  +  V + M+   +FP      +V+
Sbjct: 521 EATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVL 580

Query: 214 ETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
             +GK    EK +  +++M+  G + P+ + +  ++S YS       V+S+  ++E SD 
Sbjct: 581 NAYGKQREFEKADTVYREMQEEGCVFPDEVHF-QMLSLYSSKKDFEMVESLFERLE-SDP 638

Query: 273 ILDTPFFNCIISA-YGQAGDVEKMGELFLTMKER 305
            +++   + +++A Y +A  +     +   M+ER
Sbjct: 639 NVNSKELHLVVAALYERADKLNDASRVMNRMRER 672



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 83/178 (46%), Gaps = 2/178 (1%)

Query: 162 FNLMGVKADIQ-TLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKA 219
           F+L+    D Q ++  +     R   + +  +++D++ +   + P+V  YN+V+    +A
Sbjct: 111 FSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRA 170

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
                    F +M+ R + P+  TY +L++++ K G+     S L+++E   V  D   +
Sbjct: 171 KQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLY 230

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + +I    +  D  K   +F  +K     PD + + +MI  Y    + + A+ L  +M
Sbjct: 231 SNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEM 288


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 166/350 (47%), Gaps = 15/350 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYS 69
           E+A  LF  +  +G+ P+  +Y  ++  YG+ G    +  + + +M++ +  +PD +T S
Sbjct: 204 ERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEEMRA-AGVEPDGFTAS 262

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            +I +C +    D       ++   G     VTYN ++  +GKA  + E       M ES
Sbjct: 263 TVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEES 322

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G C PD  T N +  +Y  +G  E+  K  +     G+  +  T N +  +YG AG  D+
Sbjct: 323 G-CKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDE 381

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             ++ D+M+K  F P V TYN+++   GK      M E   +M   G  PN +T+ ++++
Sbjct: 382 ALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLA 441

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
              K G+   V  +L ++++  V L    FN +ISAYG+ G      +++  M      P
Sbjct: 442 VCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTP 501

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK--------LIQC 351
              T+  ++   +  G   AAQ++ NKM    +N G K        L+QC
Sbjct: 502 CLTTYNALLSVLSRQGDWTAAQSIINKM----KNEGFKPNDMSYSLLLQC 547



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 158/380 (41%), Gaps = 70/380 (18%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A   FE + S G  P V  Y AL+  +G++G   EA   + +M+  S CKPD  TY+ 
Sbjct: 275 DEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEE-SGCKPDAVTYNE 333

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM----------- 119
           L  S  +   ++   K L  M   GI  +A TYNTI+  YG A K +E            
Sbjct: 334 LAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNG 393

Query: 120 -----------------ESSFSAMVE------SGGCHPDIFTLNSMISAYGNSGNIEKME 156
                            +S F+ M+E        GC P+  T N+M++  G  G    + 
Sbjct: 394 FIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVT 453

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           +        GV+    T N L  +YGR G       + D M    F P + TYN ++   
Sbjct: 454 RVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVL 513

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN-----SD 271
            + G     +    KMK+ G KPN ++Y  L+  ++K G    +++I ++V       S 
Sbjct: 514 SRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSW 573

Query: 272 VIL------------------------------DTPFFNCIISAYGQAGDVEKMGELFLT 301
           VIL                              D   FN ++S Y + G   K GE+F +
Sbjct: 574 VILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDS 633

Query: 302 MKERHCVPDNITFATMIQAY 321
           +K+    PD IT+ +M+  Y
Sbjct: 634 IKQGGLSPDLITYNSMMDMY 653



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 143/295 (48%), Gaps = 4/295 (1%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKP--DVYTYSILIKSCTKFHRFDLIEKILAEMS 92
           +V    + G  D     +++M  +    P  DV  Y+ ++ + +   R++   ++ AE+ 
Sbjct: 155 VVRTLAREGQHDAVCDLLDEMLPLPPGSPGLDVRAYTTVLHALSHEGRYERALELFAELK 214

Query: 93  YLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
             G+  + V YN ++D YG+  + + ++ +    M  + G  PD FT +++I+A G  G 
Sbjct: 215 REGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEEM-RAAGVEPDGFTASTVIAACGRDGL 273

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++   ++ +    G    + T N L + +G+AG Y +   V+  M++    P  VTYN 
Sbjct: 274 VDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNE 333

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +  ++ +AG  E+  +    M  +G+ PN+ TY ++++AY  AG + +  ++   ++ + 
Sbjct: 334 LAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNG 393

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
            I     +N I+   G+      M E+   M    C P+ +T+ TM+      GM
Sbjct: 394 FIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGM 448



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 157/334 (47%), Gaps = 2/334 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + E M S G++   D +  L+SAYG+ G    AF   ++M + +   P + TY+ L+   
Sbjct: 455 VLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEM-TAAGFTPCLTTYNALLSVL 513

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           ++   +   + I+ +M   G + + ++Y+ ++  + K      +E+     V  G   P 
Sbjct: 514 SRQGDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEA-IEKEVYEGTVFPS 572

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
              L +++ +      +E +E+ + E    G K D+   N +   Y + GMY K   + D
Sbjct: 573 WVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFD 632

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            +++    P ++TYN +++ + K+    + E+  K++K   +KP+ ++Y ++++ + K G
Sbjct: 633 SIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQG 692

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
           LI +   IL ++    V      ++ ++  Y       +  E+   M +R+  P  +T+ 
Sbjct: 693 LIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSPMELTYR 752

Query: 316 TMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
            ++ +Y      + A+    ++     NS +KL+
Sbjct: 753 RVVDSYCKAKRFDEARGFLYEIAETDRNSDQKLL 786


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 156/331 (47%), Gaps = 38/331 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  + E A  +F+  L++G   +V  ++A++SAYG+SG  +EA               
Sbjct: 87  LGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAI-------------- 132

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESS 122
                                 KI   M   G++ + VTYN +ID  GK   +F+ +   
Sbjct: 133 ----------------------KIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEI 170

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M+ +G   PD  T NS+++     G  E       E    G+  DI T N L  +  
Sbjct: 171 FDEMLRNG-MQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVC 229

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D    +M  M  +   P VVTY+ +I+ + KAG ++     F +MK  G+  + +
Sbjct: 230 KGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRV 289

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+S Y+K G   +   + R++ENS +  D   +N ++  YG+    + + ++F  M
Sbjct: 290 SYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEM 349

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           K RH  P+ +T++T+I  Y+  G+   A ++
Sbjct: 350 KARHVSPNLLTYSTLIDVYSKGGLYREAMDV 380



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 147/280 (52%), Gaps = 2/280 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F+ ML +G++P    + +L++   + GL + A S   +M +      D++TY+ L+ + 
Sbjct: 170 IFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVN-RGIDQDIFTYNTLLDAV 228

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  + D+  +I++EM    I  + VTY+T+IDGY KA + ++  + F+ M +  G   D
Sbjct: 229 CKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEM-KFLGISLD 287

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             + N+++S Y   G  E+      E    G++ D+ T N L   YG+   YD +R V +
Sbjct: 288 RVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFE 347

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ R   P ++TY+ +I+ + K G   +  + F++ K  G+K + + Y +L+ A  K G
Sbjct: 348 EMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNG 407

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           L+    S+L ++    +  +   +N II A+G+    E +
Sbjct: 408 LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESV 447



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 1/199 (0%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           ++MIS  G  G +E  +  +      G    +   + +  +YGR+G  ++   +   M+ 
Sbjct: 81  SAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKD 140

Query: 200 RFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
               P +VTYN VI+  GK G   +++ E F +M   GM+P+ IT+ SL++  SK GL  
Sbjct: 141 YGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWE 200

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
              S+  ++ N  +  D   +N ++ A  + G ++   E+   M  ++ +P+ +T++TMI
Sbjct: 201 AARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMI 260

Query: 319 QAYNALGMTEAAQNLENKM 337
             Y   G  + A+NL N+M
Sbjct: 261 DGYAKAGRLDDARNLFNEM 279



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 117/243 (48%), Gaps = 6/243 (2%)

Query: 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
           + +I   G+  K E  ++ F A +  G  +  ++  +++ISAYG SG   +  K +    
Sbjct: 81  SAMISTLGRLGKVEMAKTVFKAALTEGYGNT-VYAFSAIISAYGRSGYCNEAIKIFYSMK 139

Query: 164 LMGVKADIQTLNILTKSYGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
             G+K ++ T N +  + G+ G+ + ++  + D M +    P  +T+N ++    K G  
Sbjct: 140 DYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLW 199

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           E       +M +RG+  +  TY +L+ A  K G +     I+ ++   +++ +   ++ +
Sbjct: 200 EAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTM 259

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
           I  Y +AG ++    LF  MK      D +++ T++  Y  LG  E A ++  +M    E
Sbjct: 260 IDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREM----E 315

Query: 343 NSG 345
           NSG
Sbjct: 316 NSG 318


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 162/335 (48%), Gaps = 8/335 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + E A +L+  M    +  +V  +  +V+   + G L +A   I  M+ +   KP+V
Sbjct: 204 KLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLG-FKPNV 262

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            +Y+ +I   +     +   +IL  M   GIE  + TY ++I G  K  + EE    F  
Sbjct: 263 VSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDK 322

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY---G 182
           MVE G   P+  T N++I  Y N G++E+   + +E    G+   + T N+L  +    G
Sbjct: 323 MVEIG-LVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEG 381

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G  D M   +  M+K+   P  +TYNI+I  + + G+ +K  +   +M  +G++P  +
Sbjct: 382 RMGEADDM---IKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHV 438

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+   S+   + + D +  ++ +  V  D   FN ++  +   G+VE+   L   M
Sbjct: 439 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEM 498

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   PD +TF T++Q     G  E A+ L ++M
Sbjct: 499 DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 533



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 157/332 (47%), Gaps = 6/332 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G KP+V  Y  ++  Y   G ++ A   ++ M+ V   +PD YTY  LI    K  R + 
Sbjct: 257 GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMR-VKGIEPDSYTYGSLISGMCKEGRLEE 315

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +  +M  +G+  +AVTYNT+IDGY      E   S    MV+ G   P + T N ++
Sbjct: 316 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG-IMPSVSTYNLLV 374

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A    G + + +    E    G+  D  T NIL   Y R G   K   + + M  +   
Sbjct: 375 HALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIE 434

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT VTY  +I    +   +++ ++ F+K+  +G+ P+ I + ++V  +   G + +   +
Sbjct: 435 PTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFML 494

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L++++   V  D   FN ++    + G VE+   L   MK R   PD+I++ T+I  Y  
Sbjct: 495 LKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGR 554

Query: 324 LGMTEAAQNLENKMIAMKENSG----KKLIQC 351
            G  + A  + ++M+++  N        LI+C
Sbjct: 555 RGDIKDAFRVRDEMLSIGFNPTLLTYNALIKC 586



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 162/359 (45%), Gaps = 26/359 (7%)

Query: 1   MVMLGKCKQPEQA-SLLFEVM---------LSDGLKPSVD--------VYTALVSAYGQS 42
           +V+L +   P+ A  LL +VM         L D L  S D        V+  LV    + 
Sbjct: 111 VVLLARLPSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVCCEL 170

Query: 43  GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 102
              DEAF     MK      P + T + ++    K +R ++   + AEM  L I  +  T
Sbjct: 171 RRADEAFKCFYMMKE-KGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYT 229

Query: 103 YNTIID---GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
           +N +++     GK KK  E    F   +E  G  P++ + N++I  Y + GNIE   +  
Sbjct: 230 FNIMVNVLCKEGKLKKARE----FIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRIL 285

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           +   + G++ D  T   L     + G  ++   + D M +    P  VTYN +I+ +   
Sbjct: 286 DAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNK 345

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G +E+   Y  +M  +G+ P+  TY  LV A    G + + D +++++    +I D   +
Sbjct: 346 GDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITY 405

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           N +I+ Y + G+ +K  +L   M  +   P ++T+ ++I   +     + A +L  K++
Sbjct: 406 NILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 464



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 132/318 (41%), Gaps = 74/318 (23%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E+AS LF+ M+  GL P+   Y  L+  Y   G L+ AFS  ++M       
Sbjct: 306 GMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK-KGIM 364

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKK---- 115
           P V TY++L+ +     R    + ++ EM   GI   A+TYN +I+GY   G AKK    
Sbjct: 365 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDL 424

Query: 116 ----------------------------FEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
                                        +E +  F  +++ G   PD+   N+M+  + 
Sbjct: 425 HNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG-VSPDVIMFNAMVDGHC 483

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF------ 201
            +GN+E+      E +   V  D  T N L +   R G  ++ R ++D M++R       
Sbjct: 484 ANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHI 543

Query: 202 -----------------------------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
                                        F PT++TYN +I+   K    +  EE  K+M
Sbjct: 544 SYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEM 603

Query: 233 KHRGMKPNSITYCSLVSA 250
            ++G+ P+  TY SL+  
Sbjct: 604 VNKGISPDDSTYLSLIEG 621



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 122/272 (44%), Gaps = 1/272 (0%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           + +L++ C +  R D   K    M   GI     T N ++  + K  + E     ++ M 
Sbjct: 160 FDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMF 219

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
                   ++T N M++     G ++K  ++      +G K ++ + N +   Y   G  
Sbjct: 220 RLR-ISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 278

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           +  R ++D M+ +   P   TY  +I    K G +E+    F KM   G+ PN++TY +L
Sbjct: 279 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTL 338

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  Y   G + +  S   ++    ++     +N ++ A    G + +  ++   M+++  
Sbjct: 339 IDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI 398

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +PD IT+  +I  Y+  G  + A +L N+M++
Sbjct: 399 IPDAITYNILINGYSRCGNAKKAFDLHNEMLS 430



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G+C++   E+A +L + M   G+KP    Y  L+S YG+ G + +AF   ++M S+ 
Sbjct: 513 LMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIG 572

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P + TY+ LIK   K    DL E++L EM   GI     TY ++I+G G      E 
Sbjct: 573 -FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVED 631

Query: 120 ESS 122
            +S
Sbjct: 632 NAS 634



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 2/180 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L +  + ++A  LFE +L  G+ P V ++ A+V  +  +G ++ AF  + +M   S   
Sbjct: 446 VLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKS-VP 504

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  T++ L++   +  + +    +L EM   GI+   ++YNT+I GYG+    ++    
Sbjct: 505 PDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRV 564

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+ S G +P + T N++I     +   +  E+   E    G+  D  T   L +  G
Sbjct: 565 RDEML-SIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMG 623


>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 743

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 162/328 (49%), Gaps = 6/328 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G  KQ E+   LF  + S   K  +  Y  +++ Y + G+ +EAF     M+      PD
Sbjct: 409 GDVKQAEE---LFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPD 465

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            YTY  +++ C K +     E+I   +    +E   V  N +++   +    EE+   F 
Sbjct: 466 SYTYHSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPLEEVHKIFQ 525

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M++ G C P+  T N MI  YG SG +++          +GV AD  T + L  SYG+ 
Sbjct: 526 EMIDVG-CIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGV-ADKITFSTLINSYGKK 583

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
             +  M + +  MQ      ++  YN V++ +GKAGH++K+E+   +M+  G++ +  +Y
Sbjct: 584 QDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLASY 643

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L++ Y +   I +++++  +++    I D   +N +I  YG A   +K  + F  M++
Sbjct: 644 NILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYPDKAVDTFKMMQD 703

Query: 305 RHCVPDNITFATMIQAYNALG-MTEAAQ 331
              +PD +T+  ++ A+   G + EAA+
Sbjct: 704 SGIMPDRVTYVMLVAAFEKAGNLLEAAR 731



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 168/399 (42%), Gaps = 73/399 (18%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  + E+A  + + M   G+   V  Y ++++AYG++GL ++A      MK     +PD
Sbjct: 161 GQQGKIEEAEHIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAG-LEPD 219

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TYS +I +C +  +          M  LGI  ++  +NT+I  YGKA+    +    +
Sbjct: 220 EVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLA 279

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR- 183
            M ++ GC PD  TL++++ AY  +G  +K+ +  +     G   D ++   L   Y + 
Sbjct: 280 DM-KNFGCTPDSQTLDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKC 338

Query: 184 ----------------------------------AGMYDKMRSVMDFMQKRFFFPTVVTY 209
                                             AGM++   +V   MQ     P++ T 
Sbjct: 339 NLQKEALSVFSAMRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGVVPSLETS 398

Query: 210 NIVIETFGKAGHIEKMEEYFKKMK------------------------------------ 233
             +I   G  G +++ EE F+ ++                                    
Sbjct: 399 CTMINVHGLKGDVKQAEELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEE 458

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G+ P+S TY S++    K  L  + + I  ++ NSDV LD    NC+++   +   +E
Sbjct: 459 EDGLLPDSYTYHSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPLE 518

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
           ++ ++F  M +  C+P+ ITF  MI  Y   GM + A++
Sbjct: 519 EVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARD 557



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 136/294 (46%), Gaps = 33/294 (11%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C PD YT++ LI S +K    D   +    M   G++ + +TY+ ++  Y K  K E+ E
Sbjct: 42  CVPDDYTFNTLIMSASKADYADYATRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAE 101

Query: 121 SSFSAMVESG---------------------------------GCHPDIFTLNSMISAYG 147
            +FS M++SG                                    PD       ++ YG
Sbjct: 102 VAFSHMLQSGIQVVAAYSAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYG 161

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G IE+ E   +    +G+   +   N +  +YG+AG+Y+K   + + M++    P  V
Sbjct: 162 QQGKIEEAEHIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEV 221

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY+ +I   G+AG +    +YF+ MK  G+ P S  + +L+S Y KA  ++ +  +L  +
Sbjct: 222 TYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADM 281

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +N     D+   + ++ AY +AG  +K+ ++   ++E   V D  ++ T++  Y
Sbjct: 282 KNFGCTPDSQTLDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVY 335



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 151/325 (46%), Gaps = 2/325 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C   E+A  + E M +  + P  D +   ++ YGQ G ++EA   ++ M+ +      V
Sbjct: 127 RCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMERLG-MHLGV 185

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             Y+ +I +  K   ++   ++  +M   G+E   VTY+ +I   G+A K  +    F A
Sbjct: 186 VGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQA 245

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M +  G  P     N++IS YG + N+  + +   +    G   D QTL+ + ++Y RAG
Sbjct: 246 M-KRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERAG 304

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              K+  V+  +++  +     +Y  ++  + K    ++    F  M+  GM P      
Sbjct: 305 QTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAMRKAGMAPKEYMCR 364

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           SL+ A   AG+     ++ R ++++ V+        +I+ +G  GDV++  ELF +++  
Sbjct: 365 SLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMINVHGLKGDVKQAEELFRSLRSS 424

Query: 306 HCVPDNITFATMIQAYNALGMTEAA 330
               D I +  +I  Y   GM E A
Sbjct: 425 VSKLDIIAYNVIINVYMRYGMHEEA 449



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 157/335 (46%), Gaps = 9/335 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K    + A+  F++ML  G++P+   Y+ ++  Y ++G +++A    + M  +      V
Sbjct: 58  KADYADYATRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHM--LQSGIQVV 115

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             YS +I   T+   F+  EKI+ +M    I      +   ++ YG+  K EE E     
Sbjct: 116 AAYSAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDT 175

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M E  G H  +   NSMI+AYG +G  EK  + + +    G++ D  T + +  + GRAG
Sbjct: 176 M-ERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAG 234

Query: 186 MYDKMRSVMDFMQ--KRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
              K+R  +D+ Q  KR    P    +N +I  +GKA ++  +      MK+ G  P+S 
Sbjct: 235 ---KLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQ 291

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T  ++V AY +AG   KV  +L  +  +  + DT  +  ++  Y +    ++   +F  M
Sbjct: 292 TLDAVVRAYERAGQTKKVVQVLSLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSAM 351

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++    P      ++I A    GM E A N+   M
Sbjct: 352 RKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDM 386



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 142/309 (45%), Gaps = 37/309 (11%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM--------SYL------------ 94
           M+     + +VY+Y+I+ K      ++ +I+++L +M         Y             
Sbjct: 1   MQENGKTRGNVYSYNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIMSASKAD 60

Query: 95  ---------------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
                          G++ + +TY+ ++  Y K  K E+ E +FS M++SG     +   
Sbjct: 61  YADYATRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSG--IQVVAAY 118

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           ++MI+ Y   G  EK EK   +     +  D         +YG+ G  ++   +MD M++
Sbjct: 119 SAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTMER 178

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
                 VV YN +I  +GKAG  EK    F+KMK  G++P+ +TY  ++ A  +AG +  
Sbjct: 179 LGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRD 238

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
                + ++   ++  +  FN +IS YG+A +V  +  +   MK   C PD+ T   +++
Sbjct: 239 ALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVR 298

Query: 320 AYNALGMTE 328
           AY   G T+
Sbjct: 299 AYERAGQTK 307



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 152/356 (42%), Gaps = 47/356 (13%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC   ++A  +F  M   G+ P   +  +L+ A   +G+ ++A +   DM+S     P +
Sbjct: 337 KCNLQKEALSVFSAMRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAG-VVPSL 395

Query: 66  YTYSILI-----KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            T   +I     K   K    +L   + + +S L I    + YN II+ Y +    EE  
Sbjct: 396 ETSCTMINVHGLKGDVK-QAEELFRSLRSSVSKLDI----IAYNVIINVYMRYGMHEEAF 450

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +  M E  G  PD +T +SM+          + E+ Y       V+ D    N +  +
Sbjct: 451 RIYKLMEEEDGLLPDSYTYHSMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNT 510

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             R    +++  +   M      P  +T+N++I+ +GK+G +++  +  K  +  G+  +
Sbjct: 511 CARFLPLEEVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGMLDRARDASKLAQQLGV-AD 569

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK------ 294
            IT+ +L+++Y K      +++ L +++N+        +NC++ AYG+AG ++K      
Sbjct: 570 KITFSTLINSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIA 629

Query: 295 -----------------------------MGELFLTMKERHCVPDNITFATMIQAY 321
                                        M  LF  M+E   +PD  T+ TMI+ Y
Sbjct: 630 RMEKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTY 685



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 73/171 (42%), Gaps = 1/171 (0%)

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
            + ++ + NI+ K  G    +  +  ++  M      P   T+N +I +  KA + +   
Sbjct: 7   TRGNVYSYNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIMSASKADYADYAT 66

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
             F+ M  +G++P  +TY  ++  Y K G +   +     +  S + +    ++ +I+ Y
Sbjct: 67  RAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGIQV-VAAYSAMIAIY 125

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            + G  EK  ++   M      PD   +   +  Y   G  E A+++ + M
Sbjct: 126 TRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTM 176


>gi|357462685|ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490672|gb|AES71875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 165/360 (45%), Gaps = 40/360 (11%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF---------------- 49
           + KQ + A  LF+ ML  GL P    Y+ L++ + + GL D +F                
Sbjct: 172 RAKQWQLAHGLFDEMLQKGLSPDKYTYSTLITHFSKQGLFDSSFFWLQQMERDNVSGDLV 231

Query: 50  -------------------STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
                              S  N +K   +  PD+   +++I    K   F     +L E
Sbjct: 232 LYSNLIELSRKLCDYSKAISIFNALKGSGNIVPDLIACNMMISVYGKAKLFREARLLLQE 291

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M   G+  S  +Y+T++  Y   +KF E  S FS M E   C  D+ T N MI  YG   
Sbjct: 292 MRDNGVNPSTASYSTLLAIYVDNQKFVEAVSLFSEMNEVE-CPIDLTTCNIMIDVYGQLQ 350

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            I++ + ++     MG++ ++ + N + + YG AG++ +   +   MQ +     VVTYN
Sbjct: 351 MIKEADCFFWGMRKMGIEPNVVSYNTVLRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYN 410

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I  +GK+   +K     ++M+ RG++PN+ITY +++S + KAG + +   +  ++  S
Sbjct: 411 TMISIYGKSLEHDKATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTS 470

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            V +D   +  +I AY +AG V     L   +K+    PDN++  T I      G  + A
Sbjct: 471 GVKIDEILYQTMIVAYQKAGLVAHAKRLLNELKQ----PDNVSRETAITILARAGKVDEA 526



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/374 (21%), Positives = 155/374 (41%), Gaps = 72/374 (19%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           ++S   +      + + ++ M  ++   P +  Y+++I++  +  ++ L   +  EM   
Sbjct: 130 MISILSREPDWQRSLAILDWMNEIAQYSPSLNVYNVVIRNVLRAKQWQLAHGLFDEMLQK 189

Query: 95  GIECSAVTYNTIIDGYGKAKKF-------EEME--------------------------- 120
           G+     TY+T+I  + K   F       ++ME                           
Sbjct: 190 GLSPDKYTYSTLITHFSKQGLFDSSFFWLQQMERDNVSGDLVLYSNLIELSRKLCDYSKA 249

Query: 121 -SSFSAMVESGGCHPDIFTLNSMISAYG-------------------------------- 147
            S F+A+  SG   PD+   N MIS YG                                
Sbjct: 250 ISIFNALKGSGNIVPDLIACNMMISVYGKAKLFREARLLLQEMRDNGVNPSTASYSTLLA 309

Query: 148 ----NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
               N   +E +   ++E N +    D+ T NI+   YG+  M  +       M+K    
Sbjct: 310 IYVDNQKFVEAVS-LFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIE 368

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VV+YN V+  +G+AG   +    F  M+ +G+  N +TY +++S Y K+    K  ++
Sbjct: 369 PNVVSYNTVLRVYGEAGLFGEAVHLFSLMQMKGVPQNVVTYNTMISIYGKSLEHDKATNL 428

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           ++++++  +  +   ++ IIS + +AG +++   LF  ++      D I + TMI AY  
Sbjct: 429 IQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQK 488

Query: 324 LGMTEAAQNLENKM 337
            G+   A+ L N++
Sbjct: 489 AGLVAHAKRLLNEL 502



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 22/320 (6%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+ +  ++A   F  M   G++P+V  Y  ++  YG++GL  EA    + M+ +     +
Sbjct: 347 GQLQMIKEADCFFWGMRKMGIEPNVVSYNTVLRVYGEAGLFGEAVHLFSLMQ-MKGVPQN 405

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ +I    K    D    ++ EM   GI+ +A+TY+TII  + KA K +     F 
Sbjct: 406 VVTYNTMISIYGKSLEHDKATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFH 465

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +  + G   D     +MI AY  +G +   ++  NE       +    + IL     RA
Sbjct: 466 KL-RTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNELKQPDNVSRETAITIL----ARA 520

Query: 185 GMYDK----MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           G  D+     R   D  + +     +  +  +I+ F +      + E F+KM+  G  P+
Sbjct: 521 GKVDEAMWVFRQAFDAGEVK----DISVFGCIIDIFSRERKYAHVVEVFEKMREVGHFPD 576

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF- 299
           S     +++A+ K     + D++ +Q+     +        ++  YG   D   +  LF 
Sbjct: 577 SNVIALVLNAFGKLRKFERADALYKQMYEEGCVFPDEVHFQMLGLYGARMDFNMVESLFE 636

Query: 300 -------LTMKERHCVPDNI 312
                  +  KE H V  NI
Sbjct: 637 KLDSHPNINKKELHFVVANI 656



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 9/202 (4%)

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-TLNILTKSYGRAGMYDKMRSVMDFM 197
           +N ++++   + NIE++    + +N  G +  I+  ++IL+    R   + +  +++D+M
Sbjct: 97  MNELLTSIAQTQNIEQLYSILSPYN--GRQLSIRFMISILS----REPDWQRSLAILDWM 150

Query: 198 QK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
            +   + P++  YN+VI    +A   +     F +M  +G+ P+  TY +L++ +SK GL
Sbjct: 151 NEIAQYSPSLNVYNVVIRNVLRAKQWQLAHGLFDEMLQKGLSPDKYTYSTLITHFSKQGL 210

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK-ERHCVPDNITFA 315
                  L+Q+E  +V  D   ++ +I    +  D  K   +F  +K   + VPD I   
Sbjct: 211 FDSSFFWLQQMERDNVSGDLVLYSNLIELSRKLCDYSKAISIFNALKGSGNIVPDLIACN 270

Query: 316 TMIQAYNALGMTEAAQNLENKM 337
            MI  Y    +   A+ L  +M
Sbjct: 271 MMISVYGKAKLFREARLLLQEM 292


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 157/328 (47%), Gaps = 38/328 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  +   A  +FE   + G   +V  ++AL+SAYG+SGL +EA S  N MK       
Sbjct: 243 LGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE------ 296

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESS 122
                                          G+  + VTYN +ID  GK   +F+++   
Sbjct: 297 ------------------------------YGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  G  PD  T NS+++     G  E     ++E     ++ D+ + N L  +  
Sbjct: 327 FDEM-QRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAIC 385

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D    ++  M  +   P VV+Y+ VI+ F KAG  ++    F +M++ G+  + +
Sbjct: 386 KGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRV 445

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+S Y+K G   +   ILR++ +  +  D   +N ++  YG+ G  +++ ++F  M
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM 505

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
           K  H +P+ +T++T+I  Y+  G+ + A
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEA 533



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 154/284 (54%), Gaps = 2/284 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +Q +  F+ M  +G++P    + +L++   + GL + A +  ++M +    + DV++Y+ 
Sbjct: 321 KQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTN-RRIEQDVFSYNT 379

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  K  + DL  +ILA+M    I  + V+Y+T+IDG+ KA +F+E  + F  M    
Sbjct: 380 LLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEM-RYL 438

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G   D  + N+++S Y   G  E+      E   +G+K D+ T N L   YG+ G YD++
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + V   M++    P ++TY+ +I+ + K G  ++  E F++ K  G++ + + Y +L+ A
Sbjct: 499 KKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDA 558

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
             K GL+    S++ ++    +  +   +N II A+G++  +++
Sbjct: 559 LCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDR 602



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 61/301 (20%)

Query: 12  QASLLFEVMLSDGLK---PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q  L FE++    +K   P+V  Y+ ++  + ++G  DEA +   +M+ +     D  +Y
Sbjct: 389 QMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLG-IALDRVSY 447

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + L+   TK  R +    IL EM+ +GI+   VTYN ++ GYGK  K++E++  F+ M  
Sbjct: 448 NTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKR 507

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                P++ T +++I  Y   G  ++  + + EF   G++AD+   + L  +  + G+  
Sbjct: 508 EH-VLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVG 566

Query: 189 KMRSVMDFMQKRFFFPTVVTY--------------------------------------- 209
              S++D M K    P VVTY                                       
Sbjct: 567 SAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETE 626

Query: 210 -NIVIETFGKAG----------------HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
            N VI+ FG+                   +  + E F+KM    +KPN +T+ ++++A S
Sbjct: 627 GNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACS 686

Query: 253 K 253
           +
Sbjct: 687 R 687


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 150/304 (49%), Gaps = 3/304 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M+  GL+P   +   ++   G++ ++DEA      MKS+  C  D YTY+ILI+S 
Sbjct: 71  LLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMG-CPADDYTYAILIRSL 129

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  R +    +  EM   G   SA  Y  +ID Y KA + E        M++     PD
Sbjct: 130 GRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKN-LAPD 188

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            +TLNS+I+A   +G  E   + +      GV  +  + N +    G+AG        MD
Sbjct: 189 DYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMD 248

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ R   P  +T+N +I   G+A +  +  +  ++M+  G+ P+  TY  ++ A++KAG
Sbjct: 249 EMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAG 308

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + K   +   +E +    +   +N +I A  +AG  +   +++  MK++  +PD IT A
Sbjct: 309 NMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAIT-A 367

Query: 316 TMIQ 319
           T++Q
Sbjct: 368 TVLQ 371



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 2/240 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+CK+ E+A+LLF+ M   G  PS   YT ++  Y ++G ++ A   +  M    +  P
Sbjct: 129 LGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLD-KNLAP 187

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D YT + LI + ++  R +L  +I   M   G+  + V++N ++D  GKA K   +   F
Sbjct: 188 DDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVG-LAYQF 246

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              +E+ G  P+  T N++I+  G +    +  K   E    G+  D+ T   + +++ +
Sbjct: 247 MDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAK 306

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG   K   +   M+K      VVTYN++I+   KAG  +   + +  MK +G+ P++IT
Sbjct: 307 AGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAIT 366



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 130/302 (43%), Gaps = 40/302 (13%)

Query: 29  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88
           V V  A+++AYG+S  + +      ++      KP+ YTY  +I+S  K     L  ++L
Sbjct: 14  VLVSNAVIAAYGRSSRIHKVMDEFQELDKHGS-KPNAYTYKCVIQSLVKAGNVVLAMELL 72

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            +M   G+E                                    PD    N ++   G 
Sbjct: 73  DKMIKTGLE------------------------------------PDTLLCNVVLDGLGK 96

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +  +++  K +     MG  AD  T  IL +S GR    ++   + D M++R   P+   
Sbjct: 97  ANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPA 156

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y  VI+ + KAG IE      KKM  + + P+  T  SL++A S+ G       I  +++
Sbjct: 157 YTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMK 216

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
            S V ++T  FN ++   G+AG V    +    M+ R   P++ITF T+I   N LG  +
Sbjct: 217 KSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLI---NCLGRAK 273

Query: 329 AA 330
            A
Sbjct: 274 YA 275



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 3/243 (1%)

Query: 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
           N +I  YG++ +  ++   F  + +  G  P+ +T   +I +   +GN+    +  ++  
Sbjct: 18  NAVIAAYGRSSRIHKVMDEFQEL-DKHGSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMI 76

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
             G++ D    N++    G+A M D+   +   M+         TY I+I + G+    E
Sbjct: 77  KTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDE 136

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
           +    F +M+ RG  P++  Y +++  Y KAG I     +L+++ + ++  D    N +I
Sbjct: 137 EATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLI 196

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA--MK 341
           +A  + G  E   E+F  MK+     + ++F  M+      G    A    ++M A  +K
Sbjct: 197 TAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIK 256

Query: 342 ENS 344
            NS
Sbjct: 257 PNS 259



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 96/213 (45%)

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           A ++   C   +   N++I+AYG S  I K+   + E +  G K +  T   + +S  +A
Sbjct: 3   AAIQDTPCRYHVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKA 62

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G       ++D M K    P  +  N+V++  GKA  +++  + F  MK  G   +  TY
Sbjct: 63  GNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPADDYTY 122

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L+ +  +     +   +  ++E        P +  +I  Y +AG +E    +   M +
Sbjct: 123 AILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLD 182

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++  PD+ T  ++I A +  G TE A  +  +M
Sbjct: 183 KNLAPDDYTLNSLITAVSRTGRTELACEIFERM 215


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 156/337 (46%), Gaps = 4/337 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K     QA  +FE M S+   PS+  Y  L+++   +G   +A      MK     +P
Sbjct: 20  LAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEP 79

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +TY+ LI         +   K+L+EM    I  +  TY++II    K  K EE     
Sbjct: 80  DRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVL 139

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ + GC+PD+F  N ++  +  S N+EK  + Y      G K D  + +IL     +
Sbjct: 140 EEMM-AAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAK 198

Query: 184 AGMYDKMRSVMDFMQKRF--FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            G  D+   ++  M  R   + P V+T++ +I    + G +EK  E F  M   G KPN 
Sbjct: 199 IGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNK 258

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY +L++   +A  +++   +  ++  + +  D   +N +I+ Y + G +++  +L+  
Sbjct: 259 YTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYRE 318

Query: 302 MKERHCV-PDNITFATMIQAYNALGMTEAAQNLENKM 337
           M     + P  +TF T+I  +  LG    A  L  +M
Sbjct: 319 MSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEM 355



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 155/328 (47%), Gaps = 5/328 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +PE++  + E M++ G  P V  +  ++  + +S  +++A      M   S  KPD  +Y
Sbjct: 131 KPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVE-SGYKPDNVSY 189

Query: 69  SILIKSCTKFHRFDLIEKILAEMSY--LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            ILI    K  + D   KIL+EM+    G   + +T++T+I G  +  + E+    F +M
Sbjct: 190 HILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSM 249

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           +E+G C P+ +T  ++I+    +  + +  + + +     +  D    N L   Y + G 
Sbjct: 250 LEAG-CKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGS 308

Query: 187 YDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            D+   +   M       PT+VT+N +I+ F K G + +  E   +M  +G+  ++ TY 
Sbjct: 309 MDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYR 368

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L++  S+A  + +   + +Q+     +LD       +    + G++++   +F   ++ 
Sbjct: 369 ILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKS 428

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNL 333
             VP+  TF  + ++   LG  E AQ L
Sbjct: 429 GAVPNPETFRILSESLIKLGRVEDAQKL 456



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 110/254 (43%), Gaps = 1/254 (0%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
            M + G  P+V  ++ L+    ++G L++A      M   + CKP+ YTY+ LI    + 
Sbjct: 213 AMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE-AGCKPNKYTYTTLIAGLCRA 271

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
            +     ++  +M+   I   AV YN++I GY K    +E E  +  M    G  P I T
Sbjct: 272 EKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVT 331

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
            N++I  +   G + +  +   E    G+ AD  T  IL     RA   D+   V   M+
Sbjct: 332 FNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMR 391

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           ++ F    V+    +    K G+I++    F+  +  G  PN  T+  L  +  K G + 
Sbjct: 392 EKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVE 451

Query: 259 KVDSILRQVENSDV 272
               ++   +  D+
Sbjct: 452 DAQKLMEPAKARDI 465



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 130/291 (44%), Gaps = 38/291 (13%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D Y  +V +  ++G+L +A      MKS S C P                          
Sbjct: 11  DAYDFVVQSLAKAGMLAQALEVFETMKSES-CVP-------------------------- 43

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
                    S VTYN +I+    A +F +    F +M       PD +T N++IS   +S
Sbjct: 44  ---------SLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSS 94

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           GN E   K  +E     + A++ T + + KS  +    ++   V++ M      P V  +
Sbjct: 95  GNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAF 154

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ--V 267
           N V++ F ++ ++EK  E ++ M   G KP++++Y  L+   +K G + +   IL +  +
Sbjct: 155 NGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAM 214

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             +  + +   F+ +I    + G++EK  E+F +M E  C P+  T+ T+I
Sbjct: 215 RAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLI 265



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 132/298 (44%), Gaps = 5/298 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK-SVSDCKPDVYTYS 69
           E+A  +++ M+  G KP    Y  L+    + G LDE+   +++M    +   P+V T+S
Sbjct: 168 EKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFS 227

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            LI    +    +   ++   M   G + +  TY T+I G  +A+K  +    F  M ++
Sbjct: 228 TLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQA 287

Query: 130 GGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-MGVKADIQTLNILTKSYGRAGMY 187
             C  PD    NS+I+ Y   G++++ EK Y E +   G++  I T N L   + + G  
Sbjct: 288 --CIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKL 345

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            +   ++  M  +       TY I+I    +A  +++  E +K+M+ +    + ++  S 
Sbjct: 346 GRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSF 405

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           V    K G I +  ++      S  + +   F  +  +  + G VE   +L    K R
Sbjct: 406 VGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKAR 463


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 162/335 (48%), Gaps = 8/335 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + E A +L+  M    +  +V  +  +V+   + G L +A   I  M+ +   KP+V
Sbjct: 226 KLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLG-FKPNV 284

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            +Y+ +I   +     +   +IL  M   GIE  + TY ++I G  K  + EE    F  
Sbjct: 285 VSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDK 344

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY---G 182
           MVE G   P+  T N++I  Y N G++E+   + +E    G+   + T N+L  +    G
Sbjct: 345 MVEIGLV-PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEG 403

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G  D M   +  M+K+   P  +TYNI+I  + + G+ +K  +   +M  +G++P  +
Sbjct: 404 RMGEADDM---IKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHV 460

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+   S+   + + D +  ++ +  V  D   FN ++  +   G+VE+   L   M
Sbjct: 461 TYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEM 520

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   PD +TF T++Q     G  E A+ L ++M
Sbjct: 521 DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 555



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 157/332 (47%), Gaps = 6/332 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G KP+V  Y  ++  Y   G ++ A   ++ M+ V   +PD YTY  LI    K  R + 
Sbjct: 279 GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMR-VKGIEPDSYTYGSLISGMCKEGRLEE 337

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +  +M  +G+  +AVTYNT+IDGY      E   S    MV+ G   P + T N ++
Sbjct: 338 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG-IMPSVSTYNLLV 396

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A    G + + +    E    G+  D  T NIL   Y R G   K   + + M  +   
Sbjct: 397 HALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIE 456

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT VTY  +I    +   +++ ++ F+K+  +G+ P+ I + ++V  +   G + +   +
Sbjct: 457 PTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFML 516

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L++++   V  D   FN ++    + G VE+   L   MK R   PD+I++ T+I  Y  
Sbjct: 517 LKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGR 576

Query: 324 LGMTEAAQNLENKMIAMKENSG----KKLIQC 351
            G  + A  + ++M+++  N        LI+C
Sbjct: 577 RGDIKDAFRVRDEMLSIGFNPTLLTYNALIKC 608



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 162/359 (45%), Gaps = 26/359 (7%)

Query: 1   MVMLGKCKQPEQA-SLLFEVM---------LSDGLKPSVD--------VYTALVSAYGQS 42
           +V+L +   P+ A  LL +VM         L D L  S D        V+  LV    + 
Sbjct: 133 VVLLARLPSPKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVCCEL 192

Query: 43  GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 102
              DEAF     MK      P + T + ++    K +R ++   + AEM  L I  +  T
Sbjct: 193 RRADEAFKCFYMMKE-KGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYT 251

Query: 103 YNTIID---GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
           +N +++     GK KK  E    F   +E  G  P++ + N++I  Y + GNIE   +  
Sbjct: 252 FNIMVNVLCKEGKLKKARE----FIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRIL 307

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           +   + G++ D  T   L     + G  ++   + D M +    P  VTYN +I+ +   
Sbjct: 308 DAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNK 367

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G +E+   Y  +M  +G+ P+  TY  LV A    G + + D +++++    +I D   +
Sbjct: 368 GDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITY 427

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           N +I+ Y + G+ +K  +L   M  +   P ++T+ ++I   +     + A +L  K++
Sbjct: 428 NILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 486



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 132/316 (41%), Gaps = 74/316 (23%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E+AS LF+ M+  GL P+   Y  L+  Y   G L+ AFS  ++M       
Sbjct: 328 GMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK-KGIM 386

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKK---- 115
           P V TY++L+ +     R    + ++ EM   GI   A+TYN +I+GY   G AKK    
Sbjct: 387 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDL 446

Query: 116 ----------------------------FEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
                                        +E +  F  +++ G   PD+   N+M+  + 
Sbjct: 447 HNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQG-VSPDVIMFNAMVDGHC 505

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF------ 201
            +GN+E+      E +   V  D  T N L +   R G  ++ R ++D M++R       
Sbjct: 506 ANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHI 565

Query: 202 -----------------------------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
                                        F PT++TYN +I+   K    +  EE  K+M
Sbjct: 566 SYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEM 625

Query: 233 KHRGMKPNSITYCSLV 248
            ++G+ P+  TY SL+
Sbjct: 626 VNKGISPDDSTYLSLI 641



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 122/272 (44%), Gaps = 1/272 (0%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           + +L++ C +  R D   K    M   GI     T N ++  + K  + E     ++ M 
Sbjct: 182 FDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMF 241

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
                   ++T N M++     G ++K  ++      +G K ++ + N +   Y   G  
Sbjct: 242 RLR-ISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 300

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           +  R ++D M+ +   P   TY  +I    K G +E+    F KM   G+ PN++TY +L
Sbjct: 301 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTL 360

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  Y   G + +  S   ++    ++     +N ++ A    G + +  ++   M+++  
Sbjct: 361 IDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGI 420

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +PD IT+  +I  Y+  G  + A +L N+M++
Sbjct: 421 IPDAITYNILINGYSRCGNAKKAFDLHNEMLS 452



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G+C++   E+A +L + M   G+KP    Y  L+S YG+ G + +AF   ++M S+ 
Sbjct: 535 LMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIG 594

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P + TY+ LIK   K    DL E++L EM   GI     TY ++I+G G      E 
Sbjct: 595 -FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVED 653

Query: 120 ESS 122
            +S
Sbjct: 654 NAS 656



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 2/180 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L +  + ++A  LFE +L  G+ P V ++ A+V  +  +G ++ AF  + +M   S   
Sbjct: 468 VLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKS-VP 526

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  T++ L++   +  + +    +L EM   GI+   ++YNT+I GYG+    ++    
Sbjct: 527 PDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRV 586

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+ S G +P + T N++I     +   +  E+   E    G+  D  T   L +  G
Sbjct: 587 RDEML-SIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMG 645


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 144/289 (49%), Gaps = 1/289 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +YTY+ILI    + HR +L   +   +   G+     +YNT+IDG+ K  + ++    
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M+E     PD+ T NS+I     +  + K E+   +    G++ + +T N L   Y 
Sbjct: 180 FYKMIEQS-VSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYS 238

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            AGM+ +   V   M      P VV  N  I    +   I++ ++ F  M  +G KPN I
Sbjct: 239 TAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNII 298

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y+  G    ++S++  + +  ++ +  FFN +I+AY + G ++K   +F  M
Sbjct: 299 SYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDM 358

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
           + +  +PD +TFAT+I +   +G  + A +  N M+ +     + + +C
Sbjct: 359 QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRC 407



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 152/319 (47%), Gaps = 14/319 (4%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKP 63
           +  +PE A  +F  +L  GL P V  Y  L+  + + G +D+A+     M  +SVS   P
Sbjct: 134 RMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVS---P 190

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TY+ LI    K       E++L +M   GI  +  TYN++I GY  A  ++E    F
Sbjct: 191 DVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVF 250

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  S G  P +   NS I A      I++ +  ++   L G K +I + + L   Y  
Sbjct: 251 KEM-SSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAA 309

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G +  M S+++ M  +   P    +NI+I  + + G ++K    F+ M+++GM P+++T
Sbjct: 310 EGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 369

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP----FFNCIISAYGQAGDVEKMGELF 299
           + +++S+  + G   ++D  L +  N  V +  P     + C+I      G++ K  EL 
Sbjct: 370 FATVISSLCRIG---RLDDALHKF-NHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELI 425

Query: 300 LTMKERHCVPDNITFATMI 318
             M  +   P  + + + I
Sbjct: 426 SEMMNKDIPPPGVKYFSSI 444



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 152/343 (44%), Gaps = 7/343 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            +C   ++A L+FE M + G+ P    +  ++S+  + G LD+A    N M  +    P 
Sbjct: 343 ARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIG-VPPS 401

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY-NTIIDGYGKAKKFEEMESSF 123
              Y  LI+ C         +++++EM    I    V Y ++II+   K  +  E +   
Sbjct: 402 EAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIM 461

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV++G   P++ T NS++  Y   GN+E+     +    +G++ +      L   Y +
Sbjct: 462 DLMVQTGQ-RPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCK 520

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D   +V   M  +   PT V YNI++    +A      ++ F +M   G   +  T
Sbjct: 521 NGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQT 580

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  ++    +     + + +L ++   +V  D   FN +ISA  + G  ++  ELF  + 
Sbjct: 581 YGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAIS 640

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346
               VP   T+  MI   + L   E+ +  +N  I++ E SG+
Sbjct: 641 TYGLVPTVHTYNLMI---SNLIKEESYEEADNLFISV-EKSGR 679



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 127/275 (46%), Gaps = 2/275 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + ++M+  G +P+V  + +L+  Y   G ++EAF+ ++ M S+   +P+ Y Y  L+   
Sbjct: 460 IMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG-IEPNCYIYGTLVDGY 518

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R D    +  +M + G++ ++V YN I+ G  +A++    +  F  M+ESG     
Sbjct: 519 CKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTT-VS 577

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I T   ++     +   ++      +   M VK DI T NI+  +  + G   + + +  
Sbjct: 578 IQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFA 637

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            +      PTV TYN++I    K    E+ +  F  ++  G  P+S     +V    K  
Sbjct: 638 AISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKA 697

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            + K  + L  ++ +++ L+    + + S + + G
Sbjct: 698 EVAKASNYLSIIDENNLTLEASTISLLASLFSREG 732


>gi|410110065|gb|AFV61112.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           citrodora]
          Length = 435

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 159/349 (45%), Gaps = 39/349 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 57
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 3   LFDEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 58  ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTA 122

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 123 SYSTLLTMYVENKKFIEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 182 MRKMGIETNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 241

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK     ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  
Sbjct: 242 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQT 301

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 MIVAYERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 346



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 14  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 73

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 74  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYV 132

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++ N +
Sbjct: 133 ENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIETNVV 192

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 193 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 252

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 253 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 287



 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  + ++A++LF+ + S G++    +Y  ++ AY ++GL+  A   ++++KS     
Sbjct: 270 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKS----- 324

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD       I       R +    +  +    G       +  +I  + K KK+      
Sbjct: 325 PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANAVEV 384

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           F  M    G  PD   +  +++AYG    ++K    Y E   +G
Sbjct: 385 FDKM-RGLGYFPDSNVIALVLNAYGKLHELDKANDVYMEMQEVG 427


>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           microcephala]
          Length = 440

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 157/349 (44%), Gaps = 39/349 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 57
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 58  ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
                            S   PD+  Y+ +I    K   F     ++ EM   G+  +  
Sbjct: 62  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTA 121

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 240

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S + +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQT 300

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 13  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 72

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +      E    GV  +  + + L   Y 
Sbjct: 73  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYV 131

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 132 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 191

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 192 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 251

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 252 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 286



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+   
Sbjct: 72  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA-AGVMPNTASYSTLLTMY 130

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 131 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 189

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 190 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 246

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 247 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYE 306

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 307 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 366

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 367 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 422


>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
 gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
          Length = 1365

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 154/329 (46%), Gaps = 4/329 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +LG+  QP  A  LF+   S  +   V VY +L+S Y + G  +     +  M+    
Sbjct: 98  LSVLGRANQPGLAQELFDRAES-SIGNCVQVYNSLMSVYARHGDWNSVQQLLCRMQD-RG 155

Query: 61  CKPDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           C+PD+ T++I+IK+ T+   +  L   +L ++   G+    +TYNT+I       +  + 
Sbjct: 156 CRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDA 215

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M +  GC PDI+T N+MIS YG +G +E     +      G   D  T N +  
Sbjct: 216 ILIFEEM-QRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLH 274

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           ++ R G  +++  +   M+        +TYN +I  +GKAG   K EE + +MK  G  P
Sbjct: 275 AFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCP 334

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +S+T+  L+    KAG + +  ++   +  S V      F+ +I AY +A         +
Sbjct: 335 DSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEHTY 394

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTE 328
             M      PD + ++ M+  +   GM E
Sbjct: 395 SCMLRAGVRPDLLAYSVMLDVFFKAGMPE 423



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 138/309 (44%), Gaps = 8/309 (2%)

Query: 27  PSVDVYTALVSAYG---QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           P+  +   ++S  G   Q GL  E F       S+ +C   V  Y+ L+    +   ++ 
Sbjct: 89  PNPRMLAVMLSVLGRANQPGLAQELFDRAES--SIGNC---VQVYNSLMSVYARHGDWNS 143

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           ++++L  M   G     VT+N +I    +    E + SS    V + G  PD  T N++I
Sbjct: 144 VQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLI 203

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           SA   +  +      + E    G   DI T N +   YGRAG  +   S+   MQ++ F 
Sbjct: 204 SACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFT 263

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P  VTYN V+  F + G IE++E     M+      + ITY +++  Y KAG+  K + +
Sbjct: 264 PDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEEL 323

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             Q++      D+  F  +I   G+AG V +   +F  M +    P    F+ MI AY  
Sbjct: 324 YVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAK 383

Query: 324 LGMTEAAQN 332
             M   A++
Sbjct: 384 ADMFTDAEH 392



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 147/319 (46%), Gaps = 1/319 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G +P +  +  ++ A  + G+ +   S++      +  +PD  TY+ LI +C+  +
Sbjct: 151 MQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNN 210

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R      I  EM   G +    TYN +I  YG+A + E   S F  M E G   PD  T 
Sbjct: 211 RLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFT-PDAVTY 269

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           NS++ A+   G IE++E+           +D  T N +   YG+AGM+ K   +   M++
Sbjct: 270 NSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKE 329

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P  VT+ ++I+T GKAG + +    F+ M    ++P    + +++ AY+KA +   
Sbjct: 330 EGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTD 389

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
            +     +  + V  D   ++ ++  + +AG  EK   L+  M      P+   +A M++
Sbjct: 390 AEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVR 449

Query: 320 AYNALGMTEAAQNLENKMI 338
            +         +NL  +M+
Sbjct: 450 VFYQKSSVAEIENLSKEMV 468



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 164/341 (48%), Gaps = 10/341 (2%)

Query: 2   VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-D 60
           VML K  +  +A        + G     D    LV++Y ++G+ DEA +   DM +   +
Sbjct: 549 VMLAKAGRFSEAEEEMRTSQTYGQVQVSDFLKVLVASYDRAGMQDEALARFLDMTTEGLE 608

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
              +V   +++   C K   F   E ++  +    ++ SA+ +  II  YGK K ++  E
Sbjct: 609 MDAEVLQTAVMC-YCRKGFAFVAHELLIDCLHAFDVKDSAM-HVAIIASYGKLKLWQNAE 666

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  + +  G   +    ++++SAY  +GN E+  +  +     G++ +    N + ++
Sbjct: 667 IVFRDL-QQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNATCANYVLEA 725

Query: 181 YGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
           +GRAG   K + + +F Q+       P   T+ ++   F + G++E+    +++MK  G 
Sbjct: 726 FGRAG---KAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMKEAGF 782

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P+   + +L++ YS+  + +  + +++ ++ + + LD   +N +IS Y + G       
Sbjct: 783 SPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAAL 842

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +F  M+E  C PD  TF T+I  Y+   M + AQ L  +MI
Sbjct: 843 VFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMI 883



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 122/255 (47%), Gaps = 2/255 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A L+FE M   G  P +  Y A++S YG++G + EA S+I  +       PD  TY+ ++
Sbjct: 215 AILIFEEMQRQGCDPDIWTYNAMISVYGRAGRV-EAASSIFRIMQEQGFTPDAVTYNSVL 273

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
            +  +  R + +E+I   M         +TYNT+I  YGKA    + E  +  M E G C
Sbjct: 274 HAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRC 333

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PD  T   +I   G +G + +    + +     V+  +Q  + +  +Y +A M+     
Sbjct: 334 -PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFTDAEH 392

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
               M +    P ++ Y+++++ F KAG  EK    +K M   G+KP    Y  +V  + 
Sbjct: 393 TYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFY 452

Query: 253 KAGLIMKVDSILRQV 267
           +   + +++++ +++
Sbjct: 453 QKSSVAEIENLSKEM 467



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 146/351 (41%), Gaps = 35/351 (9%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            GK K  + A ++F  +   G   +   Y+AL+SAY ++G  + A   +++M + +  +P+
Sbjct: 657  GKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVA-AGLQPN 715

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
                + ++++  +  +   I +    +  +GI  ++ T+  I   + +    EE  S + 
Sbjct: 716  ATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNGNLEEARSMYR 775

Query: 125  AMVESG----------------------------------GCHPDIFTLNSMISAYGNSG 150
             M E+G                                  G   DI   N MIS Y   G
Sbjct: 776  QMKEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLG 835

Query: 151  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            +       +     +G   D  T N L   Y R  M  + ++++  M K    P + TY 
Sbjct: 836  SYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYT 895

Query: 211  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             +I  +G+    E  E  FK +   G KP++  Y  +++ Y KAG   K++ I+ Q++  
Sbjct: 896  TLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEIIEQMKVD 955

Query: 271  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
                     + ++ +YG+ G   K  E+  T+ E    PD I + ++I ++
Sbjct: 956  GFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSH 1006



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 2/295 (0%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           ++ A++++YG+  L   A     D++       +   YS L+ +  +   F+   + L  
Sbjct: 648 MHVAIIASYGKLKLWQNAEIVFRDLQQ-HGFAGNTSAYSALLSAYAETGNFERATRALDN 706

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M   G++ +A   N +++ +G+A K +E+   F  + E G   P+  T   +  A+  +G
Sbjct: 707 MVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMG-ISPNSRTFVVIFHAFSRNG 765

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           N+E+    Y +    G    IQ    L   Y R  +      ++  ++K      +  YN
Sbjct: 766 NLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYN 825

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I  + K G        FK M+  G  P++ T+ +L+  YS+  ++ +  ++LR++  +
Sbjct: 826 HMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKT 885

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
               +   +  +ISAYG+    E    +F ++ E  C PD   +  MI  Y   G
Sbjct: 886 GNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAG 940



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 153/372 (41%), Gaps = 52/372 (13%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K   PE+  +L++ M+  GLKP + VY  +V  + Q        S++ +++++S      
Sbjct: 418 KAGMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQK-------SSVAEIENLSKEMVQS 470

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYL-GIECSAVTYNTIIDGY---GKAKKFEEMES 121
                 + S      F     ++ ++S+  G+     T N ++  +   GK     ++  
Sbjct: 471 SASLAALSSTLAKGGFYAEAAVVLKISFAQGVAVKVETLNDVLGAFEASGKLSDARDLVH 530

Query: 122 SFSAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           + S++  S   H  ++  L  M++  G     E+  +    +  + V      L +L  S
Sbjct: 531 AVSSIEPSVAAH--LYKRLAVMLAKAGRFSEAEEEMRTSQTYGQVQVS---DFLKVLVAS 585

Query: 181 YGRAGMYDK--------------------MRSVMDFMQKRFFF---------------PT 205
           Y RAGM D+                      +VM + +K F F                 
Sbjct: 586 YDRAGMQDEALARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHAFDVKD 645

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
              +  +I ++GK    +  E  F+ ++  G   N+  Y +L+SAY++ G   +    L 
Sbjct: 646 SAMHVAIIASYGKLKLWQNAEIVFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALD 705

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            +  + +  +    N ++ A+G+AG  +++ E F  + E    P++ TF  +  A++  G
Sbjct: 706 NMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAFSRNG 765

Query: 326 MTEAAQNLENKM 337
             E A+++  +M
Sbjct: 766 NLEEARSMYRQM 777



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYT 67
            ++A  L   M+  G  P++  YT L+SAYG+    ++A   F +I +    + CKPD   
Sbjct: 873  QEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAE----TGCKPDATA 928

Query: 68   YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
            Y+++I    K      IE+I+ +M   G E S  T + ++D YGK     + E     + 
Sbjct: 929  YNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLP 988

Query: 128  ESGGCHPDIFTLNSMISAYGNS 149
            E  G  PD     S+I+++ N+
Sbjct: 989  EI-GMSPDAIHYTSIINSHLNN 1009



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/402 (18%), Positives = 152/402 (37%), Gaps = 67/402 (16%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M GK     +A  L+  M  +G  P    +T L+   G++G ++EA +   DM   S  +
Sbjct: 310 MYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLK-SQVR 368

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  +S +I +  K   F   E   + M   G+    + Y+ ++D + KA   E+    
Sbjct: 369 PTLQAFSAMICAYAKADMFTDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAGMPEKCIIL 428

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK-----------------------WY 159
           + AMV SG   P++     M+  +    ++ ++E                        +Y
Sbjct: 429 YKAMVGSG-LKPELSVYAIMVRVFYQKSSVAEIENLSKEMVQSSASLAALSSTLAKGGFY 487

Query: 160 NEFNLM-------GVKADIQTLNILTKSYGRAGMYDKMR-----------SVMDFMQKRF 201
            E  ++       GV   ++TLN +  ++  +G     R           SV   + KR 
Sbjct: 488 AEAAVVLKISFAQGVAVKVETLNDVLGAFEASGKLSDARDLVHAVSSIEPSVAAHLYKRL 547

Query: 202 F---------------FPTVVTY---------NIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                             T  TY          +++ ++ +AG  ++    F  M   G+
Sbjct: 548 AVMLAKAGRFSEAEEEMRTSQTYGQVQVSDFLKVLVASYDRAGMQDEALARFLDMTTEGL 607

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           + ++    + V  Y + G       +L    ++  + D+     II++YG+    +    
Sbjct: 608 EMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHAFDVKDSAMHVAIIASYGKLKLWQNAEI 667

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +F  +++     +   ++ ++ AY   G  E A    + M+A
Sbjct: 668 VFRDLQQHGFAGNTSAYSALLSAYAETGNFERATRALDNMVA 709


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 176/364 (48%), Gaps = 37/364 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A+   + M S GL P+   Y  +++AYG  G +DEA +  + MK  S C P+V TY+ 
Sbjct: 331 EEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKK-SGCVPNVNTYNF 389

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K  RF ++ ++L EMS  G   + VT+NT++   GK +  E+  +     ++S 
Sbjct: 390 ILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGK-RGMEDYVTRVLEGMKSC 448

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G      T N++I+AYG  G+     K YNE    G    + T N L     R G +   
Sbjct: 449 GVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTA 508

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGH------IEK-------------------- 224
           +S++  M+ + F P   +Y+++++ + K G+      IEK                    
Sbjct: 509 QSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIA 568

Query: 225 ---------MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                    +E+ F+++K RG  P+ + + S++S Y+K G+  KV  I   ++ S +  D
Sbjct: 569 NFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPD 628

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N ++  Y +  +  +  ++   +K     PD +++ T+I  +   G+ + AQ + +
Sbjct: 629 LITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILS 688

Query: 336 KMIA 339
           +MIA
Sbjct: 689 EMIA 692



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 153/352 (43%), Gaps = 5/352 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +  + E+A  LF  +   G+ P++  Y  ++  YG+ G        + D    +  +P
Sbjct: 183 LSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEP 242

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +T S +I +C +    D       ++   G     VTYN ++  +GKA  + E     
Sbjct: 243 DDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVL 302

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E  GC PD  T N +   Y  +G  E+  K  +     G+  +  T N +  +YG 
Sbjct: 303 KEM-EQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGN 361

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+  ++ D M+K    P V TYN ++   GK      M E   +M   G  PN +T
Sbjct: 362 IGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVT 421

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + ++++   K G+   V  +L  +++  V L    +N +I+AYG+ G      +++  M 
Sbjct: 422 WNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMT 481

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKENSGKKLIQC 351
                P   T+  ++   +  G    AQ++ +KM        + S   L+QC
Sbjct: 482 SAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQC 533



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 145/294 (49%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           +V A G+ G  D   + +++M      + DV  Y+ ++ + ++  R++   ++ AE+   
Sbjct: 143 VVRALGREGQHDAVCALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQ 202

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G+  + VTYN ++D YG+  +      +    + + G  PD FT +++I+A    G +++
Sbjct: 203 GVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDE 262

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
              ++ +    G    + T N L + +G+AG Y +   V+  M++    P  VTYN +  
Sbjct: 263 AVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAG 322

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
           T+ +AG  E+  +    M  +G+ PN+ TY ++++AY   G + +  ++  Q++ S  + 
Sbjct: 323 TYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVP 382

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
           +   +N I+   G+      M E+   M    C P+ +T+ TM+      GM +
Sbjct: 383 NVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMED 436



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 164/396 (41%), Gaps = 70/396 (17%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A   FE + + G  P V  Y AL+  +G++G   EA   + +M+    C+PD  TY+ 
Sbjct: 261 DEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGNYTEALRVLKEMEQ-DGCQPDAVTYNE 319

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L  +  +   ++   K L  M+  G+  +A TYNT++  YG   K +E  + F  M +SG
Sbjct: 320 LAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSG 379

Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                                             GC P+  T N+M++  G  G  + + 
Sbjct: 380 CVPNVNTYNFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVT 439

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           +        GV+    T N L  +YGR G       + + M    F P + TYN ++   
Sbjct: 440 RVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVL 499

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN-----SD 271
            + G     +    KM+ +G KPN  +Y  L+  Y+K G I  +D+I ++V       S 
Sbjct: 500 SRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSW 559

Query: 272 VIL------------------------------DTPFFNCIISAYGQAGDVEKMGELFLT 301
           VIL                              D   FN ++S Y + G   K+ E+F +
Sbjct: 560 VILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDS 619

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +K+    PD IT+ +++  Y     +  A+ + N++
Sbjct: 620 IKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQL 655



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 122/306 (39%), Gaps = 37/306 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C     A  ++  M S G  P +  Y AL++   + G    A S ++ M++    KP+
Sbjct: 465 GRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRT-KGFKPN 523

Query: 65  VYTYSILIKSCTK-----------------------------------FHRFDLIEKILA 89
             +YS+L++   K                                     R   IEK   
Sbjct: 524 DQSYSLLLQCYAKGGNIAGIDAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKAFQ 583

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           E+   G     V +N+++  Y K   + ++   F ++ +SG   PD+ T NS++  Y   
Sbjct: 584 EVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSG-LSPDLITYNSLMDMYAKC 642

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
               + EK  N+     VK D+ + N +   + + G+  + + ++  M      P VVTY
Sbjct: 643 SESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTY 702

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           + ++  +       +  E    M    +KP  +TY  +V +Y KA    +  S L +V  
Sbjct: 703 HTLVGGYASLEMFSEAREVINYMIQHNLKPMELTYRRVVDSYCKAKRFEEARSFLSEVSE 762

Query: 270 SDVILD 275
           +D   D
Sbjct: 763 TDPNFD 768


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 156/330 (47%), Gaps = 2/330 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK K+  +A L+ E M S GLKP    YTAL+  + + G   EAF    +M +    K 
Sbjct: 316 FGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLA-RGVKL 374

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +++TY+ L+K   KF   +  + +L EM  +GI+    TYN +I+GY K +    ++   
Sbjct: 375 NLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLL 434

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M +S    P  +T   +I+     G+IE   + +     +GVK +      L K + +
Sbjct: 435 SEMKKSN-LVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQ 493

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +   ++  M K+   P V+ YN VI    K+  +E+ ++Y  +M  RG+KPN  T
Sbjct: 494 EGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYT 553

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+  Y K+G +   D   +++    +  +      +I  Y + G   +   +F  M 
Sbjct: 554 YGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCML 613

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            R   PD  T++ +I      G  + A  L
Sbjct: 614 GRSVHPDVRTYSALIHGLLRNGKLQGAMEL 643



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 168/401 (41%), Gaps = 71/401 (17%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN--DMK 56
           M++ G C+    E AS +FE+M+S G+KP+  +YT L+  + Q G   EA   +   D K
Sbjct: 451 MIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKK 510

Query: 57  SVSD--------------------------------CKPDVYTYSILIKSCTKFHRFDLI 84
            V                                   KP+VYTY  LI    K     + 
Sbjct: 511 GVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVA 570

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           ++   EM   GI  + V    +IDGY K     E  S F  M+     HPD+ T +++I 
Sbjct: 571 DRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCML-GRSVHPDVRTYSALIH 629

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               +G ++   +  +EF   G+  D+ T N +   + + G   K   + ++M ++   P
Sbjct: 630 GLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISP 689

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            ++TYN +I    KAG IE+  E F  +  +G+  N++TY +++  Y K+G + K   + 
Sbjct: 690 NIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLF 749

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL------------------------ 300
            ++    V  D+  ++ +I    + G+ EK   LFL                        
Sbjct: 750 DEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSG 809

Query: 301 ----------TMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
                      M ++H  PD++T+  +I  +   G  + A+
Sbjct: 810 KVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAE 850



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 158/332 (47%), Gaps = 9/332 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK---PDVYT 67
           E   LLFE M   G  PS+  Y  ++    ++G +DEAF    ++K + D K    DV+T
Sbjct: 254 EGKRLLFE-MEEKGCSPSLVTYNVVIGGLCRAGEVDEAF----ELKKLMDKKGLVADVFT 308

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           YSILI    K  R    + +L EM   G++   V Y  +IDG+ +     E       M+
Sbjct: 309 YSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEML 368

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            + G   ++FT N+++      G++EK +   NE  ++G+K D QT N + + Y +    
Sbjct: 369 -ARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNT 427

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            +++ ++  M+K    PT  T  ++I    + G IE     F+ M   G+KPN++ Y +L
Sbjct: 428 SRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTL 487

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  + + G   +   IL+ ++   V  D   +N +I    ++  +E+  +  + M ER  
Sbjct: 488 IKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGL 547

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            P+  T+  +I  Y   G  + A     +M+ 
Sbjct: 548 KPNVYTYGALIHGYCKSGEMQVADRYFKEMLG 579



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 152/320 (47%), Gaps = 7/320 (2%)

Query: 5   GKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+    +A+ +F  ML   + P V  Y+AL+    ++G L  A   +++        
Sbjct: 595 GYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLE-KGLV 653

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+TY+ +I    K        ++   M   GI  + +TYN +I+G  KA + E     
Sbjct: 654 PDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERAREL 713

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  +   G  H  + T  ++I  Y  SGN+ K  + ++E  L GV  D    + L     
Sbjct: 714 FDGIPGKGLAHNAV-TYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCR 772

Query: 183 RAGMYDKMRSV-MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           + G  +K  S+ ++ +QK F   +  + N +++ F K+G + +  +  + M  + +KP+ 
Sbjct: 773 KEGNTEKALSLFLESVQKGF--ASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDH 830

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  L+  + K G + + +     ++  +++ +   +  ++S Y  AG   +M  LF  
Sbjct: 831 VTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDE 890

Query: 302 MKERHCVPDNITFATMIQAY 321
           M  +   PD +T++ MI A+
Sbjct: 891 MIAKDIEPDGVTWSVMIDAH 910



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 135/276 (48%), Gaps = 3/276 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L    L  GL P V  Y +++S + + G + +AF  +++        P++ TY+ LI   
Sbjct: 643 LLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQ-LHEYMCQKGISPNIITYNALINGL 701

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K    +   ++   +   G+  +AVTY TIIDGY K+    +    F  M   G   PD
Sbjct: 702 CKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKG-VPPD 760

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            F  +++I      GN EK    + E    G  A   +LN L   + ++G   +   +++
Sbjct: 761 SFVYSALIDGCRKEGNTEKALSLFLESVQKGF-ASTSSLNALMDGFCKSGKVIEANQLLE 819

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M  +   P  VTY I+I+   K G +++ E++F  M+ R + PN++TY +L+S Y+ AG
Sbjct: 820 DMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAG 879

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
              ++ ++  ++   D+  D   ++ +I A+ + GD
Sbjct: 880 RRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGD 915



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 137/310 (44%), Gaps = 2/310 (0%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           V+  L+  Y + GL DEA S     K  +     +   + L+    K ++ +L  +    
Sbjct: 168 VFELLIDGYKKKGLFDEAVSFFLGAKR-NGFVVGLLCCNGLLSDLLKANKLELFWRFYNG 226

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M    +     TY  +I+ + +A   +E +     M E  GC P + T N +I     +G
Sbjct: 227 MLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEM-EEKGCSPSLVTYNVVIGGLCRAG 285

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            +++  +     +  G+ AD+ T +IL   +G+     + + +++ M  +   P  V Y 
Sbjct: 286 EVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYT 345

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I+ F + G   +     ++M  RG+K N  TY +LV    K G + K D++L ++   
Sbjct: 346 ALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMV 405

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +  DT  +N +I  Y +  +  ++ +L   MK+ + VP   T   +I      G  E A
Sbjct: 406 GIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDA 465

Query: 331 QNLENKMIAM 340
             +   M+++
Sbjct: 466 SRVFEIMVSL 475



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 141/317 (44%), Gaps = 7/317 (2%)

Query: 5    GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            G CK  + E+A  LF+ +   GL  +   Y  ++  Y +SG L +AF   ++M ++    
Sbjct: 700  GLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEM-TLKGVP 758

Query: 63   PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            PD + YS LI  C K    +    +  E    G   S  + N ++DG+ K+ K  E    
Sbjct: 759  PDSFVYSALIDGCRKEGNTEKALSLFLESVQKGF-ASTSSLNALMDGFCKSGKVIEANQL 817

Query: 123  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
               MV+     PD  T   +I  +  +G +++ E+++ +     +  +  T   L   Y 
Sbjct: 818  LEDMVDKH-VKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYN 876

Query: 183  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNS 241
             AG   +M ++ D M  +   P  VT++++I+   K G H++ ++     +K  G    +
Sbjct: 877  MAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKN 936

Query: 242  ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            + +  L+    +   + +V  +L ++E   + L     + ++  + +AG ++    +  +
Sbjct: 937  VCHV-LIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKS 995

Query: 302  MKERHCVPDNITFATMI 318
            M     VPD+     +I
Sbjct: 996  MVRFKWVPDSTELNDLI 1012



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 141/349 (40%), Gaps = 42/349 (12%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G    +  ++ L      S L   A S +N M  +S         S LIKSC +F   ++
Sbjct: 96  GFSQKLQSFSILALILCNSRLFSRADSVVNQMIMMSSGGYSEILDS-LIKSCKEFDLNNV 154

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF-------------------- 123
                +  +  G     V +  +IDGY K   F+E  S F                    
Sbjct: 155 NGNENSNNNDRG-----VVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLS 209

Query: 124 ---------------SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                          + M+E+   H D++T   +I+A+  +GN ++ ++   E    G  
Sbjct: 210 DLLKANKLELFWRFYNGMLEANVLH-DVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCS 268

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
             + T N++     RAG  D+   +   M K+     V TY+I+I+ FGK     + +  
Sbjct: 269 PSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLM 328

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M  +G+KP  + Y +L+  + + G   +   +  ++    V L+   +N ++    +
Sbjct: 329 LEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCK 388

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            GD+EK   L   M      PD  T+  MI+ Y     T   ++L ++M
Sbjct: 389 FGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEM 437


>gi|168061839|ref|XP_001782893.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665615|gb|EDQ52293.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 713

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 175/354 (49%), Gaps = 27/354 (7%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +FE  +  G+ PS D Y  L+S Y + G L      +  M+  +   P V  Y++++
Sbjct: 42  AEAVFEEFVKSGMSPSHDDYVILMSGYTKCGSLQRGIGILQKMRE-AGIHPQVSAYNVIL 100

Query: 73  KSCTKFHRFDL-----IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           + CT+  R D+       +IL +M   G++  +VT+N I++   +  +  +++  + A++
Sbjct: 101 EGCTRSTRGDINGMMEAHRILMDM---GLQQDSVTFNIIMNALNRVGRIRDVD-RYWALM 156

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
             G   PD+ T + +I+A+G + +  K++    E    G+KAD+   N L   YG+AG++
Sbjct: 157 RMGRIVPDLTTCSILINAFGRARDWHKVDLVLAEMETYGIKADLMIYNSLISVYGKAGLF 216

Query: 188 DKMRSVM-----------DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
            ++  V+           D       F  +VTYN +++ +GKAG ++ +  +F +MK  G
Sbjct: 217 YEVELVVKSLRAEIARREDLGNSSLAF-DLVTYNTLLDVYGKAGRLDDVIYWFGEMKKSG 275

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           ++P+ +T+ SLV+AY KA        +L      +   D  F+N ++  +G+ G      
Sbjct: 276 VQPDVLTFDSLVNAYGKAS--HYDGEVLELFRKYNYKSDLVFYNTLLFMFGKGGHYADAW 333

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 350
           ++   MK    +P + T+ ++I A+   G     Q  EN +  MK N  K + Q
Sbjct: 334 KILEDMKAAGFMPTSETYNSLILAF---GRGSQWQEAENTLERMKANGVKPVAQ 384



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 167/341 (48%), Gaps = 42/341 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            G+ +   +  L+   M + G+K  + +Y +L+S YG++GL  E    +  +++    + 
Sbjct: 175 FGRARDWHKVDLVLAEMETYGIKADLMIYNSLISVYGKAGLFYEVELVVKSLRAEIARRE 234

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+   S+          FDL                 VTYNT++D YGKA + +++   F
Sbjct: 235 DLGNSSLA---------FDL-----------------VTYNTLLDVYGKAGRLDDVIYWF 268

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNS----GNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
             M +SG   PD+ T +S+++AYG +    G + ++ + YN       K+D+   N L  
Sbjct: 269 GEMKKSG-VQPDVLTFDSLVNAYGKASHYDGEVLELFRKYN------YKSDLVFYNTLLF 321

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +G+ G Y     +++ M+   F PT  TYN +I  FG+    ++ E   ++MK  G+KP
Sbjct: 322 MFGKGGHYADAWKILEDMKAAGFMPTSETYNSLILAFGRGSQWQEAENTLERMKANGVKP 381

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
            + ++  L+ AYS +G I K + ++ +++  ++I      N ++  Y +AGD+  + + +
Sbjct: 382 VAQSFSFLLEAYSLSGQIPKGEKLIVKMKEENLIYGIAGHNSLLRFYMRAGDIGSIIQTY 441

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEA-----AQNLEN 335
            T + R   P+  +F  MI+A       +      AQ+LEN
Sbjct: 442 ETCQTRGPKPNQSSFVPMIEALTKENTVDERFWGIAQDLEN 482



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 128/279 (45%), Gaps = 13/279 (4%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           M+++ D KPD   Y  +I       R ++ E +  E    G+  S   Y  ++ GY K  
Sbjct: 13  MQALPDLKPDELVYRTIINVLINARRMNVAEAVFEEFVKSGMSPSHDDYVILMSGYTKCG 72

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS--GNIEKMEKWYNEFNLMGVKADIQ 172
             +        M E+G  HP +   N ++     S  G+I  M + +     MG++ D  
Sbjct: 73  SLQRGIGILQKMREAG-IHPQVSAYNVILEGCTRSTRGDINGMMEAHRILMDMGLQQDSV 131

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T NI+  +  R G    +      M+     P + T +I+I  FG+A    K++    +M
Sbjct: 132 TFNIIMNALNRVGRIRDVDRYWALMRMGRIVPDLTTCSILINAFGRARDWHKVDLVLAEM 191

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE----------NSDVILDTPFFNCI 282
           +  G+K + + Y SL+S Y KAGL  +V+ +++ +           NS +  D   +N +
Sbjct: 192 ETYGIKADLMIYNSLISVYGKAGLFYEVELVVKSLRAEIARREDLGNSSLAFDLVTYNTL 251

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +  YG+AG ++ +   F  MK+    PD +TF +++ AY
Sbjct: 252 LDVYGKAGRLDDVIYWFGEMKKSGVQPDVLTFDSLVNAY 290



 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 71/154 (46%), Gaps = 2/154 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + M GK      A  + E M + G  P+ + Y +L+ A+G+     EA +T+  MK+ + 
Sbjct: 320 LFMFGKGGHYADAWKILEDMKAAGFMPTSETYNSLILAFGRGSQWQEAENTLERMKA-NG 378

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KP   ++S L+++ +   +    EK++ +M    +      +N+++  Y +A     + 
Sbjct: 379 VKPVAQSFSFLLEAYSLSGQIPKGEKLIVKMKEENLIYGIAGHNSLLRFYMRAGDIGSII 438

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
            ++    ++ G  P+  +   MI A      +++
Sbjct: 439 QTYET-CQTRGPKPNQSSFVPMIEALTKENTVDE 471


>gi|410110103|gb|AFV61131.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           alba]
          Length = 419

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 157/349 (44%), Gaps = 39/349 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 57
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 58  ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
                            S   PD+  Y+ +I    K   F     ++ EM   G+  +  
Sbjct: 62  KLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTS 121

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 240

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 300

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 103/255 (40%), Gaps = 31/255 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 166 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 224

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K       F+
Sbjct: 225 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 284

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        F  M+   E  G              PD    ++ I     +G IE+
Sbjct: 285 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEE 344

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +     +   Y  +  V D M+   +FP      +V+ 
Sbjct: 345 ATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLN 404

Query: 215 TFGKAGHIEKMEEYF 229
            +GK    +K  + +
Sbjct: 405 AYGKLQEFDKANDVY 419


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 164/336 (48%), Gaps = 3/336 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-LLDEAFSTINDMKSVSDC 61
           +L + ++ ++   LFE M  +G + +   Y  ++  YG+ G   D   S   +MK + + 
Sbjct: 83  ILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDL-EI 141

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PD YTY+ +I +C +        ++  EM   G   + VTYN ++D YGK    +E  S
Sbjct: 142 SPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEA-S 200

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
                +E+ G  P+I T N +I+AY  +G  ++           G+  D  T   L  ++
Sbjct: 201 ELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAF 260

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            RA  Y+K       M+K    P +VTYNI+I+ +G+   ++ M + FK M+ +   P+ 
Sbjct: 261 NRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDL 320

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +T+ SL+ ++   G++ +V ++ R+++ +  +     FN +I  YG+ G V+   +++  
Sbjct: 321 VTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKG 380

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +      P   TFA ++ +    G  +  + +  +M
Sbjct: 381 LLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEM 416



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 165/336 (49%), Gaps = 3/336 (0%)

Query: 4   LGKCKQPEQASLLFE-VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           LG+  + ++A  +FE +   D  K       +++S  G    L  A      +K      
Sbjct: 12  LGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQDESYS 71

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMES 121
            DVY Y+ LI   ++  RFD    +   M   G   +AVTYN ++D YGK    ++ ++S
Sbjct: 72  LDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQS 131

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M +     PD +T N+MI+A   + + ++  + + E    G   +  T N L   Y
Sbjct: 132 LFQEMKDLE-ISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVY 190

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+ GM+ +   ++  M+     P +VTYN +I  + +AG  ++     K +  +G+ P+ 
Sbjct: 191 GKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDE 250

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TYC+L+SA+++A    K      ++  ++   +   +N +I  YG+   ++ M ++F  
Sbjct: 251 FTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKF 310

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M+E++C PD +T+ ++++++   GM     N+  +M
Sbjct: 311 MQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREM 346



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 172/408 (42%), Gaps = 73/408 (17%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK    ++AS L   M + G+ P++  Y  L++AY ++GL DEA +    + S   C PD
Sbjct: 191 GKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLC-PD 249

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            +TY  LI +  +  R++   +   EM       + VTYN +ID YG+ +K ++M   F 
Sbjct: 250 EFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFK 309

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E   C PD+ T NS++ ++GN G + ++   + E    G    + T NIL + YGR 
Sbjct: 310 FMQEKN-CTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRC 368

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIV-------------------------------- 212
           G  D    +   + +    PTV T+  +                                
Sbjct: 369 GYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACH 428

Query: 213 ---IETFGKAGHIEKMEEYFKKMKHRGMKPNS--------ITYC---------------- 245
              I ++  +G   ++ +Y  +++    +P S        + YC                
Sbjct: 429 AGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLY 488

Query: 246 ------------SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
                       +++S  +K G I +   +L ++  + +  D   +NC++S YG+ G   
Sbjct: 489 DNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYH 548

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           K  E+   M+     P+ IT+ T++ +Y   G  + A  +   M+A +
Sbjct: 549 KAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAAR 596



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 162/328 (49%), Gaps = 3/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  LF+ M   G  P+   Y AL+  YG+ G+  EA   + +M++ +   P++ TY+ 
Sbjct: 162 QEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEA-AGISPNIVTYNE 220

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI +  +    D    +   +   G+     TY T+I  + +A+++E+   +F+ M ++ 
Sbjct: 221 LIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTN 280

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P+I T N +I  YG    ++ M K +          D+ T N L KS+G  GM  ++
Sbjct: 281 -CTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEV 339

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +V   M++  + P V T+NI+IE +G+ G+++   + +K +   G++P   T+ +L+++
Sbjct: 340 SNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMAS 399

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP- 309
            ++ G   + + + +++  + + L       +I +Y  +G   ++ +    +++    P 
Sbjct: 400 LAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPL 459

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
             I   T + AY    M   AQ   N++
Sbjct: 460 SGILCKTFVLAYCKCCMDNEAQLALNQL 487



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 138/318 (43%), Gaps = 1/318 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            G C    + S +F  M   G  P VD +  L+  YG+ G +D +      +   +  +P
Sbjct: 330 FGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLR-TGLQP 388

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V T++ L+ S  +  R+   EK+  EM+  G++ S   +  +I  Y  + +F ++    
Sbjct: 389 TVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYI 448

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             + +S           + + AY       + +   N+    G   DI+  N +     +
Sbjct: 449 DELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAK 508

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  ++   +++ ++K    P  VTYN ++  +G+ G   K EE   +M+  G  PN IT
Sbjct: 509 RGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLIT 568

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+ +Y+K G +     +   +  + V  D   FN ++ +Y   G  ++   +   M 
Sbjct: 569 YNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMT 628

Query: 304 ERHCVPDNITFATMIQAY 321
           E  C P  ITF  ++  Y
Sbjct: 629 EHGCQPTQITFKALLDGY 646



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/390 (20%), Positives = 164/390 (42%), Gaps = 71/390 (18%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ L + +LS GL P    Y  L+SA+ ++   ++A  T  +M+  ++C P++ TY+I
Sbjct: 232 DEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRK-TNCTPNIVTYNI 290

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  + D + K+   M         VT+N+++  +G      E+ + F  M  +G
Sbjct: 291 LIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAG 350

Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                                             G  P + T  +++++    G  ++ E
Sbjct: 351 YMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCE 410

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK-----------RFFF-- 203
           K   E    G++        L  SY  +G + ++R  +D ++K           + F   
Sbjct: 411 KVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLA 470

Query: 204 -----------------------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                                  P +  +N +I    K G IE+  +  ++++   +KP+
Sbjct: 471 YCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPD 530

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY  L+S Y + G+  K + ++ ++  +    +   +N ++ +Y + G ++    +F 
Sbjct: 531 GVTYNCLMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFG 590

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAA 330
            M      PDN TF T++ +Y++LG+ + A
Sbjct: 591 DMVAARVRPDNFTFNTLVGSYSSLGLYKEA 620



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 87/171 (50%), Gaps = 1/171 (0%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEY 228
           D+     L     RA  +D+  ++ + MQ+       VTYN++++ +GK G   ++++  
Sbjct: 73  DVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSL 132

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F++MK   + P+  TY ++++A  +     +   + ++++ +    +   +N ++  YG+
Sbjct: 133 FQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGK 192

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            G  ++  EL + M+     P+ +T+  +I AY   G+ + A  L+  +++
Sbjct: 193 GGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLS 243



 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M M G+     +A  +   M   G  P++  Y  L+ +Y + G +D+A     DM + + 
Sbjct: 538 MSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVA-AR 596

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
            +PD +T++ L+ S +    +     ++  M+  G + + +T+  ++DGY
Sbjct: 597 VRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGY 646


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 142/290 (48%), Gaps = 14/290 (4%)

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS--------YLGIECSAVTYNTIIDGYG 111
           D +P+V T+ ILI    KF R D   ++L +MS         + +E   V YNT+IDG  
Sbjct: 335 DIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLC 394

Query: 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
           K  + +E       M    GC PD  T N +I  +  +G IEK ++ ++E N  GV  ++
Sbjct: 395 KVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNV 454

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFM---QKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            T+N L     R G   ++ S ++F    Q+R      VTY  +I  F    + EK  E 
Sbjct: 455 VTVNTLVGGMCRTG---RVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMEL 511

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F +M   G  P++I Y +L+S +S+AG +     +L +++   +  DT  +N +I  + +
Sbjct: 512 FNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCR 571

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                ++ E+   M+E    PD IT+ T+I   +  G  + AQ +  KMI
Sbjct: 572 TNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMI 621



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 134/291 (46%), Gaps = 1/291 (0%)

Query: 21  LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80
           +S  ++P V +Y  L+    + G   E    +  M+S   C PD  TY+ LI    K   
Sbjct: 375 ISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGE 434

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            +  +++  EM+  G+  + VT NT++ G  +  +      +F    +  G   D  T  
Sbjct: 435 IEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSA-VNFFVEAQRRGMKGDAVTYT 493

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           ++I+A+ N  N EK  + +NE    G   D      L   + +AG       V+  ++K 
Sbjct: 494 ALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKL 553

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P  V YN +I  F +     ++ E  K+M+  G+KP++ITY +L++  SK G +   
Sbjct: 554 GIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFA 613

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
             ++R++  + V+     +  +I+AY   G+  +  E+F  MK    VP N
Sbjct: 614 QKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPN 664



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 146/328 (44%), Gaps = 7/328 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E+   LF+ M  +G+ P+V     LV    ++G +  A +   + +     K
Sbjct: 428 GFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQR-RGMK 486

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D  TY+ LI +    + F+   ++  EM   G    A+ Y T+I G+ +A +  +  +S
Sbjct: 487 GDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMAD--AS 544

Query: 123 FS-AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F  A ++  G  PD    N++I  +  +    ++ +   E    G+K D  T N L    
Sbjct: 545 FVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYA 604

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPN 240
            + G     + VM  M K    PTV TY  VI  +   G+  +  E FK MK    + PN
Sbjct: 605 SKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPN 664

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           ++ Y  L+++  K   +    S++  ++   V  +T  +N I        D+EK+ E   
Sbjct: 665 TVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMD 724

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTE 328
            M E  C PD IT   + +  +A+G  E
Sbjct: 725 RMIEHACNPDYITMEILTEWLSAVGEIE 752



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 3/251 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LF  ML  G  P   VY  L+S + Q+G + +A   + ++K +   +PD   Y+ 
Sbjct: 506 EKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLG-IRPDTVCYNT 564

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    + ++F  + ++L EM   G++   +TYNT+I    K    +  +     M+++G
Sbjct: 565 LIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAG 624

Query: 131 GCHPDIFTLNSMISAYGNSGN-IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
              P + T  ++I+AY  +GN  E ME + +      V  +    NIL  S  +      
Sbjct: 625 -VVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKS 683

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             S+M+ M+     P   TYN + +       +EK+ E+  +M      P+ IT   L  
Sbjct: 684 AVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTE 743

Query: 250 AYSKAGLIMKV 260
             S  G I ++
Sbjct: 744 WLSAVGEIERL 754



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 158/429 (36%), Gaps = 116/429 (27%)

Query: 4   LGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV--- 58
           L  C+    A+L  L++      +  +V+  + L+ A G+S L++E+    ND+      
Sbjct: 130 LAFCEPDSNANLSRLYKTSKELNIPLTVNAASFLLRASGRSELVEESLILFNDLDPSVKN 189

Query: 59  ---------------------------------SDCKPDVYTYSILIKSCTKFHRF---- 81
                                            S+C+P+  T  IL     K  R     
Sbjct: 190 TYLRNVWLSILLRSGRVKDALKVIDEMFESNDDSNCRPNDATGDILFSFLLKRERNEELL 249

Query: 82  --DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESSFSAMVESGGC 132
             D I  ++ +    G+  S+     +I    + +K       F EM     A++ES  C
Sbjct: 250 SEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEM-IKLGAVLESAAC 308

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK------------- 179
                  NS+++     GN  +M +   +   M ++ ++ T  IL               
Sbjct: 309 -------NSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALE 361

Query: 180 ---------------------------------SYGRA----GMYDKMRSVMDFMQKRFF 202
                                              GR     G+ ++MRS      ++  
Sbjct: 362 VLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRS------QKGC 415

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P  +TYN +I+ F KAG IEK +E F +M   G+ PN +T  +LV    + G +    +
Sbjct: 416 APDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVN 475

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
              + +   +  D   +  +I+A+    + EK  ELF  M +  C PD I + T+I  ++
Sbjct: 476 FFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFS 535

Query: 323 ALG-MTEAA 330
             G M +A+
Sbjct: 536 QAGRMADAS 544



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 1/139 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+  G+ P+V  Y A+++AY  +G  +EA     DMK+ S   P+   Y+ILI S  K +
Sbjct: 620 MIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNN 679

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +      ++ +M   G+  +  TYN I  G    K  E++      M+E   C+PD  T+
Sbjct: 680 KVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEH-ACNPDYITM 738

Query: 140 NSMISAYGNSGNIEKMEKW 158
             +       G IE+++K+
Sbjct: 739 EILTEWLSAVGEIERLKKF 757



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 1/216 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           AS +   +   G++P    Y  L+  + ++      F  + +M+  +  KPD  TY+ LI
Sbjct: 543 ASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEE-AGLKPDTITYNTLI 601

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
              +K       +K++ +M   G+  +  TY  +I+ Y       E    F  M  +   
Sbjct: 602 AYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKV 661

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            P+    N +I++   +  ++       +  + GV  +  T N + K        +K+  
Sbjct: 662 PPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFE 721

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            MD M +    P  +T  I+ E     G IE+++++
Sbjct: 722 FMDRMIEHACNPDYITMEILTEWLSAVGEIERLKKF 757


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 163/330 (49%), Gaps = 8/330 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + E M   G+ P V  + +++S   ++  +D+AF     M     C PD  TYSI++ + 
Sbjct: 209 MLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLE-RGCVPDSLTYSIMLDNL 267

Query: 76  TKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
           ++ +R D ++++L  M  +   C     T+N  I    ++ KF   ++    M+ESG   
Sbjct: 268 SRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGS-L 326

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV-KADIQTLNILTKSYGRAGMYDKMRS 192
           P++ + N +I     SGN++   K   +    G  K D+   N L   + +AG   +   
Sbjct: 327 PNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQ 386

Query: 193 VMDFMQ-KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           ++  M+ K    P VVTYN +I+   K G +++ +   ++M+  G KPN +TY +L++ Y
Sbjct: 387 LLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGY 446

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER--HCVP 309
           +K G+  + +S+  ++       D   +N ++SA+ +AG + K   ++  +K +  +C P
Sbjct: 447 AKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSP 506

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIA 339
           D IT+  +I  Y     TE    L  +M A
Sbjct: 507 DAITYRILIDGYCRAEDTEQGLTLLQEMTA 536



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 154/325 (47%), Gaps = 42/325 (12%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V+ G CK    + A  L   ML  G  KP V  +  L+S + ++G L +A   + +MK+ 
Sbjct: 335 VIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAK 394

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           + C PDV TY+ LI   +KF      + +L EM  +G + + VTY  +I+GY K   +EE
Sbjct: 395 NICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEE 454

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            ES F  M  + GC PDI T N+++SA+  +G + K E                      
Sbjct: 455 AESLFDEM-SAKGCFPDIITYNTVLSAFSKAGMMSKAE---------------------- 491

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                 G+Y ++++     +  +  P  +TY I+I+ + +A   E+     ++M  RG  
Sbjct: 492 ------GVYQQLKN-----KTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWS 540

Query: 239 PNSITYCSLVSAYSKAGLI-MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            +S TY  L++  ++   +  K  ++ +Q+ + D +     FN ++  + + GDV     
Sbjct: 541 CDSYTYNVLIAKLAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARS 600

Query: 298 LFLTMKERHCVPDNITFATMIQAYN 322
           +   M E+  + D    A+ ++A N
Sbjct: 601 MVQEMNEKGHLVD----ASNLEALN 621



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 168/369 (45%), Gaps = 41/369 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--------------- 55
           + A L+ + ++ +G  P+   Y+ LV    +   LD+A   I +M               
Sbjct: 97  DDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDC 156

Query: 56  ----------KSVSDCK-----------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
                      S  +C+           PDV TY+  I    K  + D   ++L EM   
Sbjct: 157 IFGFCEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRG 216

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           GI    VT+ +II G  KA + ++    F  M+E  GC PD  T + M+     +  ++ 
Sbjct: 217 GIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLER-GCVPDSLTYSIMLDNLSRANRLDT 275

Query: 155 MEKWYNEFNLM--GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           +++       M  G   ++ T N    +  R+G +   ++++  M +    P +++YN V
Sbjct: 276 VDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFV 335

Query: 213 IETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           I+   K+G+++   +  +KM   G  KP+ I + +L+S + KAG + +   +L +++  +
Sbjct: 336 IDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKN 395

Query: 272 V-ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           + + D   +N +I    + G +++   L   M+   C P+ +T+A +I  Y   GM E A
Sbjct: 396 ICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEA 455

Query: 331 QNLENKMIA 339
           ++L ++M A
Sbjct: 456 ESLFDEMSA 464



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 166/380 (43%), Gaps = 47/380 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++P  A    + ML  G +P +  Y +L+     +  +D+A   + ++   +   P
Sbjct: 55  LCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVR-NGFAP 113

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK----KFEEM 119
           +  TYS L+    +  R D    ++ EM   G  C+ V Y   I G+ +A+    ++E  
Sbjct: 114 NHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECR 173

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +     M+ESG   PD+ T N+ IS    +G ++K  +   E +  G+  D+ T   +  
Sbjct: 174 DGD--EMIESGRI-PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIIS 230

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------ 233
              +A   D    V   M +R   P  +TY+I+++   +A  ++ ++E  + M+      
Sbjct: 231 GLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGC 290

Query: 234 -------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
                                            G  PN ++Y  ++    K+G +     
Sbjct: 291 VMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWK 350

Query: 263 ILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVPDNITFATMIQA 320
           + R++ +S     D  FFN +IS + +AG + +  +L + MK ++ CVPD +T+ T+I  
Sbjct: 351 LSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDG 410

Query: 321 YNALGMTEAAQNLENKMIAM 340
            +  G  + A+ L  +M A+
Sbjct: 411 QSKFGSLKQAKLLLQEMQAV 430



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 149/341 (43%), Gaps = 10/341 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +   A  L + M   G  P+V  YTAL+    ++    +A  T+  M   S C+
Sbjct: 19  GLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLR-SGCE 77

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+ TY+ LI      +R D    +L E+   G   + +TY+T++    + ++ ++    
Sbjct: 78  PDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRRLDQARGL 137

Query: 123 FSAMVESGG-CHPDIF--TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              M+  G  C+  ++   +     A   S   E  +   +E    G   D+ T N    
Sbjct: 138 IREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDG--DEMIESGRIPDVVTYNTFIS 195

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              +AG  DK   +++ M +    P VVT+  +I    KA  I+   + FK M  RG  P
Sbjct: 196 GLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVP 255

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVE--NSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +S+TY  ++   S+A  +  VD +L  ++   +  +++    N  I A  ++G       
Sbjct: 256 DSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKN 315

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + L M E   +P+ +++  +I      G  + A  L  KM+
Sbjct: 316 ILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKML 356



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 122/279 (43%), Gaps = 3/279 (1%)

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ LI    K    D  + +L +M+  G   + VTY  +IDG  KA++  +   +  
Sbjct: 10  VVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVK 69

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+ SG C PD+ T NS+I     +  ++       E    G   +  T + L     R 
Sbjct: 70  RMLRSG-CEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRR 128

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK--KMKHRGMKPNSI 242
              D+ R ++  M  R     +V Y   I  F +A       E     +M   G  P+ +
Sbjct: 129 RRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVV 188

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY + +S   KAG + K   +L +++   +  D   F  IIS   +A  ++   ++F  M
Sbjct: 189 TYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGM 248

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            ER CVPD++T++ M+   +     +    +   M AMK
Sbjct: 249 LERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMK 287



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 7/173 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-VSDCKPDVYTYS 69
           E+A  LF+ M + G  P +  Y  ++SA+ ++G++ +A      +K+  S C PD  TY 
Sbjct: 453 EEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYR 512

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           ILI    +    +    +L EM+  G  C + TYN +I    K  + EE+ S   A+ + 
Sbjct: 513 ILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLI---AKLAETEEVPSKALAVYQQ 569

Query: 130 ---GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                C P     NS++  +  +G++        E N  G   D   L  L K
Sbjct: 570 MLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKGHLVDASNLEALNK 622



 Score = 41.6 bits (96), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G  A + T   L     ++G  D  ++++  M      P VVTY  +I+   KA      
Sbjct: 5   GYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDA 64

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAY------SKAGLIMK 259
            +  K+M   G +P+ +TY SL+           AGL+++
Sbjct: 65  IQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQ 104


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 159/316 (50%), Gaps = 5/316 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFD 82
           G  PSV  Y A++ A   + L   A    + M S     P+VYTY+ILI++ C + HR +
Sbjct: 111 GYVPSVLAYNAVLLALSDASL-TSARRFFDSMLS-DGVAPNVYTYNILIRALCGRGHRKE 168

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
            +  IL +M   G   + VTYNT++  + +A + +  E     M++ GG  P++ T NSM
Sbjct: 169 ALS-ILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLD-GGLKPNLVTFNSM 226

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           ++    +G +E   K ++E    G+  D  + N L   Y +AG   +  SV   M ++  
Sbjct: 227 VNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 286

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P VVT+  +I    KAG++E      ++M+ RG++ N +T+ +L+  + K G +     
Sbjct: 287 MPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALL 346

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
            +R +    +      +N +I+ Y   G +++  EL   M+ +   PD +T++T+I AY 
Sbjct: 347 AVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYC 406

Query: 323 ALGMTEAAQNLENKMI 338
               T +A  L  +M+
Sbjct: 407 KNCDTHSAFELNQQML 422



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 154/307 (50%), Gaps = 2/307 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A   F+ MLSDG+ P+V  Y  L+ A    G   EA S + DM+  + C P+V TY+ L+
Sbjct: 134 ARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRG-AGCGPNVVTYNTLV 192

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
            +  +    D  E+++  M   G++ + VT+N++++G  KA K E+    F  M+  G  
Sbjct: 193 AAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREG-L 251

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PD  + N+++  Y  +G   +    + E    G+  D+ T   L     +AG  +   +
Sbjct: 252 APDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVT 311

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  M++R      VT+  +I+ F K G ++      + M+   +KP+ + Y +L++ Y 
Sbjct: 312 LVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYC 371

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
             G + +   +L ++E   +  D   ++ IISAY +  D     EL   M E+  +PD I
Sbjct: 372 MVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAI 431

Query: 313 TFATMIQ 319
           T++++I+
Sbjct: 432 TYSSLIR 438



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 142/319 (44%), Gaps = 8/319 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E A  +F+ M+ +GL P    Y  LV  Y ++G   EA S   +M       
Sbjct: 229 GMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQ-KGIM 287

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV T++ LI    K    +    ++ +M   G++ + VT+  +IDG+ K    ++   +
Sbjct: 288 PDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLA 347

Query: 123 FSAMVESGGCH--PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              M +   C   P +   N++I+ Y   G +++  +  +E    G+K D+ T + +  +
Sbjct: 348 VRGMRQ---CRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISA 404

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y +         +   M ++   P  +TY+ +I    +   +      FK M   G++P+
Sbjct: 405 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPD 464

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY SL+  + K G + +  S+  ++  + V+ D   ++ +I+   ++    +  +L  
Sbjct: 465 EFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLF 524

Query: 301 TMKERHCVPDNITFATMIQ 319
            +     +P N  +  ++ 
Sbjct: 525 KLYHEEPIPANTKYDALMH 543



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 148/356 (41%), Gaps = 28/356 (7%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  L   M   GL+ +   +TAL+  + + G LD+A   +  M+     KP V  Y+ 
Sbjct: 307 EWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCR-IKPSVVCYNA 365

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       R D   ++L EM   G++   VTY+TII  Y K             M+E G
Sbjct: 366 LINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKG 425

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T +S+I        +      +     +G++ D  T   L   + + G  ++ 
Sbjct: 426 -VLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERA 484

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            S+ D M K    P VVTY+++I    K+    + ++   K+ H    P +  Y +L+  
Sbjct: 485 LSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHC 544

Query: 251 YSKA---------------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
             KA               GL+ + D + + + + +  LD   ++ +I  + +AG+V K 
Sbjct: 545 CRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKA 604

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
                 M +R   P++ +  ++I+              EN M+   +   ++L+ C
Sbjct: 605 LSFHKQMLQRGFAPNSTSTISLIRGL-----------FENGMVVEADQVIQQLLNC 649



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 155/361 (42%), Gaps = 62/361 (17%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   + A L    M    +KPSV  Y AL++ Y   G +DEA   +++M++    K
Sbjct: 334 GFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEA-KGLK 392

Query: 63  PDVYTYSILI----KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           PDV TYS +I    K+C     F+L +++L +    G+   A+TY+++I    + K+  +
Sbjct: 393 PDVVTYSTIISAYCKNCDTHSAFELNQQMLEK----GVLPDAITYSSLIRVLCEEKRLSD 448

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  M++ G   PD FT  S+I  +   GN+E+    +++    GV  D+ T ++L 
Sbjct: 449 AHVLFKNMIKLG-LQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLI 507

Query: 179 --------------------------------------------------KSYGRAGMYD 188
                                                             K +   G+ +
Sbjct: 508 NGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMN 567

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   V   M  R +      Y+++I    +AG++ K   + K+M  RG  PNS +  SL+
Sbjct: 568 EADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLI 627

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               + G++++ D +++Q+ N   + D      +I      G+V+ + ++   M +   +
Sbjct: 628 RGLFENGMVVEADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLL 687

Query: 309 P 309
           P
Sbjct: 688 P 688


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 162/328 (49%), Gaps = 2/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A+     M   GL P   +YT ++  + ++G + EA    ++M  +  C PDV TY+ 
Sbjct: 314 DHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLG-CLPDVVTYNT 372

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K HR    E++L EM   G+     T+ T+I GY +   FE+    F  ++   
Sbjct: 373 LLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQR 432

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+   NS+I      G++ K  + +++ +   +  +  T +IL  S+   G  ++ 
Sbjct: 433 -LRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEA 491

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              +D M  +   P ++TYN +I+ + ++G+++K +++ +KM    + P+ IT+ +L+  
Sbjct: 492 FGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHG 551

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K   +    ++   +E   V  D   +N II+ + + G++E+ G +F  M      PD
Sbjct: 552 YIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPD 611

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
             T+ ++I  +   G ++ A  L ++M+
Sbjct: 612 RYTYMSLINGHVTAGNSKEAFQLHDEMM 639



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 160/337 (47%), Gaps = 4/337 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  + E+A   ++ M   G+ P V  ++ L+  +   G +D A + + +MK +    
Sbjct: 271 GFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLG-LV 329

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD   Y+++I    +        ++  EM  LG     VTYNT+++G  K  +  + E  
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEEL 389

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M E G   PD+ T  ++I  Y   GN EK  + ++      ++ D+   N L     
Sbjct: 390 LNEMKERG-VTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMC 448

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G   K   + D M  R  FP  VTY+I+I++  + G +E+   +  +M  +G  PN +
Sbjct: 449 RKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIM 508

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S++  Y ++G + K    L+++   +++ D   FN +I  Y +  ++     +F  M
Sbjct: 509 TYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIM 568

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           ++    PD +T+  +I  ++  G  E A  +  KM A
Sbjct: 569 EKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGA 605



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 149/322 (46%), Gaps = 4/322 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK    ++A  +F  M    + P V  +  L+  + + G ++EA     +M+   
Sbjct: 233 VLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQ-R 291

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PDV ++S LI   +   + D     L EM  LG+    V Y  +I G+ +A    E 
Sbjct: 292 GVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEA 351

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 MV   GC PD+ T N++++       +   E+  NE    GV  D+ T   L  
Sbjct: 352 LRVRDEMV-GLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIH 410

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y R G ++K   + D +  +   P VV YN +I+   + G + K  E +  M  R + P
Sbjct: 411 GYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFP 470

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N +TY  L+ ++ + G + +    L ++ +   + +   +N II  Y ++G+V+K  +  
Sbjct: 471 NHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFL 530

Query: 300 LTMKERHCVPDNITFATMIQAY 321
             M + + +PD ITF T+I  Y
Sbjct: 531 QKMMQDNILPDLITFNTLIHGY 552



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 147/317 (46%), Gaps = 10/317 (3%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P V  +  L+ A  ++G +D A + ++ M +    KP + T++ ++K   K  RFD  ++
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMAN-KGLKPGIVTFNSVLKGLCKHRRFDKAKE 248

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +   M    +     ++N +I G+ +  + EE    +  M +  G  PD+ + + +I  +
Sbjct: 249 VFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEM-QQRGVTPDVVSFSCLIGLF 307

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G ++    +  E   +G+  D     ++   + RAG   +   V D M      P V
Sbjct: 308 STRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDV 367

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV----DS 262
           VTYN ++    K   +   EE   +MK RG+ P+  T+ +L+  Y + G   K     D+
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDT 427

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           +L Q    DV+     +N +I    + GD+ K  EL+  M  R   P+++T++ +I ++ 
Sbjct: 428 LLHQRLRPDVVA----YNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHC 483

Query: 323 ALGMTEAAQNLENKMIA 339
             G  E A    ++M++
Sbjct: 484 EKGQVEEAFGFLDEMVS 500



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 155/339 (45%), Gaps = 8/339 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG---LLDEAFSTINDMKSVSDCK 62
           + ++P +A   F ++L   +        AL++A  ++G   L +EA+  +      SD +
Sbjct: 99  QSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGWPHLAEEAYRLVLS----SDSE 154

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            + YT +I++ S  K   FD  + +++EM    +    VT+N +ID   +A   +   + 
Sbjct: 155 VNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIAL 214

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             +M    G  P I T NS++         +K ++ +   +   V  D+++ NIL   + 
Sbjct: 215 VDSMANK-GLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFC 273

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G  ++       MQ+R   P VV+++ +I  F   G ++    Y ++MK  G+ P+ +
Sbjct: 274 RVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGV 333

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y  ++  + +AG + +   +  ++     + D   +N +++   +   +    EL   M
Sbjct: 334 IYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEM 393

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           KER   PD  TF T+I  Y   G  E A  L + ++  +
Sbjct: 394 KERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQR 432



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 4/133 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G  K+ +Q     + M+ D + P +  +  L+  Y +   +  AF+  N M+     +PD
Sbjct: 521 GNVKKGQQ---FLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEK-EMVQPD 576

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+++I   ++    +   ++  +M   GIE    TY ++I+G+  A   +E      
Sbjct: 577 AVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHD 636

Query: 125 AMVESGGCHPDIF 137
            M+  G    D F
Sbjct: 637 EMMHRGFAPDDKF 649


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 157/323 (48%), Gaps = 6/323 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +  LG   + E+A  +FE +   GL P    Y AL+  Y ++G L +A S +++M+  S 
Sbjct: 298 ITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMER-SG 356

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD +TYS+LI +     R++    +L EM   G+  ++  ++ I+  Y    K+++  
Sbjct: 357 FSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQK-- 414

Query: 121 SSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            SF  + E  + G  PD    N MI  +G    ++     ++   + GV+ D  T N L 
Sbjct: 415 -SFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLI 473

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + ++G ++K   + + MQ+    P   TYNI+I +FG+    E ++    KM+ +G+ 
Sbjct: 474 DCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLL 533

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            N +TY +LV  Y ++G        L  +++  +   +  +N +I+AY Q G  E+    
Sbjct: 534 ANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINA 593

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
           F  M+     P  +   ++I A+
Sbjct: 594 FRVMRADGLKPSVLVLNSLINAF 616



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 152/306 (49%), Gaps = 6/306 (1%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD--LIEKI 87
            Y AL+ A  ++  L++A + ++ M+   D  P D   YS +I+S T+ ++ D  +++KI
Sbjct: 186 TYNALIGACARNDDLEKALNLMSRMRR--DGFPSDFVNYSFIIQSLTRTNKSDSSMLQKI 243

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
            AE+    IE      N II G+ K+        SF AMV+  G  P   TL ++I+A G
Sbjct: 244 YAEIESDKIELDGQLLNDIIVGFAKSGDVNRA-MSFLAMVQGNGLSPKTATLVAVITALG 302

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
           N+G  E+ E  + E    G+    +  N L K Y + G      S++  M++  F P   
Sbjct: 303 NAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEH 362

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY+++I+ +  AG  E      K+M+  G++PNS  +  ++++Y   G   K   +LR++
Sbjct: 363 TYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREM 422

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
            NS V  D  F+N +I  +G+   ++     F  M+     PD +T+ T+I  +   G  
Sbjct: 423 RNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHH 482

Query: 328 EAAQNL 333
             A+ L
Sbjct: 483 NKAEEL 488



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 144/310 (46%), Gaps = 2/310 (0%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82
           +GL P      A+++A G +G  +EA +   ++K      P    Y+ L+K   K     
Sbjct: 285 NGLSPKTATLVAVITALGNAGRTEEAEAIFEELKE-GGLMPRTRAYNALLKGYVKTGSLK 343

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
             E I++EM   G      TY+ +ID Y  A ++E        M E+ G  P+ +  + +
Sbjct: 344 DAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEM-EASGVRPNSYVFSRI 402

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           +++Y + G  +K  +   E    GV  D    N++  ++G+    D   +  D M+    
Sbjct: 403 LASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGV 462

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P  VT+N +I+   K+GH  K EE F+ M+  G  P + TY  +++++ +      V +
Sbjct: 463 QPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKT 522

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           +L ++++  ++ +   +  ++  YGQ+G  +   E    MK     P +  +  +I AY 
Sbjct: 523 LLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYA 582

Query: 323 ALGMTEAAQN 332
             G++E A N
Sbjct: 583 QRGLSEQAIN 592



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 153/310 (49%), Gaps = 2/310 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A ++ + M + G++P+  V++ ++++Y   G   ++F  + +M++ S   PD + Y++
Sbjct: 378 ESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRN-SGVSPDRHFYNV 436

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I +  K +  D        M   G++  AVT+NT+ID + K+    + E  F AM ESG
Sbjct: 437 MIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESG 496

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P   T N MI+++G     E ++    +    G+ A++ T   L   YG++G +   
Sbjct: 497 -CSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDA 555

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              ++ M+     P+   YN +I  + + G  E+    F+ M+  G+KP+ +   SL++A
Sbjct: 556 IECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINA 615

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + +     +  S+L+ ++ +D+  D   +  ++ A  +    +K+  ++  M    C PD
Sbjct: 616 FGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPD 675

Query: 311 NITFATMIQA 320
               A +  A
Sbjct: 676 RKARAMLRSA 685



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/239 (18%), Positives = 103/239 (43%), Gaps = 8/239 (3%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           Y+ +I   G+++K       + A + S        T N++I A   + ++EK     +  
Sbjct: 157 YSILIHALGRSEKL------YEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRM 210

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDK--MRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
              G  +D    + + +S  R    D   ++ +   ++           N +I  F K+G
Sbjct: 211 RRDGFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSG 270

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            + +   +   ++  G+ P + T  ++++A   AG   + ++I  +++   ++  T  +N
Sbjct: 271 DVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYN 330

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            ++  Y + G ++    +   M+     PD  T++ +I AY   G  E+A+ +  +M A
Sbjct: 331 ALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEA 389


>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
 gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
          Length = 1480

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 166/344 (48%), Gaps = 13/344 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPS----VDVYTALVSAYGQSGLLDEAFSTINDMK 56
           + +LGK  Q    +L  EV +    +PS    V VY A++  Y + G  ++    ++ M+
Sbjct: 227 LSVLGKANQ---EALAVEVFMR--AEPSAGNTVQVYNAMMGVYARRGRFNKVQELLDLMR 281

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRF--DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
               CKPD+ +++ LI +  K      +L  ++L E+   G+    +TYNT+I    +A 
Sbjct: 282 E-RGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISACSRAS 340

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
             EE    F  M E+  C PD++T N+MIS YG  G   K E+ +N+    G   D  + 
Sbjct: 341 NLEEAAKVFDDM-EAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSY 399

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N L  ++ R G  +K++ + + M K  F    +TYN +I  +GK G  E   + ++ M+ 
Sbjct: 400 NSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQS 459

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G  P+++TY  L+ +  K   I +   ++ ++ N+ V      ++ +I  Y +AG   +
Sbjct: 460 SGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGKPVE 519

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             E F  M      PD++ ++ M+  +      + A  L  +M+
Sbjct: 520 AEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMTLYKEML 563



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 137/290 (47%), Gaps = 3/290 (1%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 74
           LL EV  S GL+P    Y  L+SA  ++  L+EA    +DM++   C+PD++TY+ +I  
Sbjct: 313 LLNEVRRS-GLRPDTITYNTLISACSRASNLEEAAKVFDDMEA-HHCQPDLWTYNAMISV 370

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             +       E++  ++   G    AV+YN+++  + +    E+++  +  MV+ G    
Sbjct: 371 YGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIG-FGK 429

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D  T N+MI  YG  G  E   + Y +    G   D  T  +L  S G+     +   VM
Sbjct: 430 DEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVM 489

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             M      PT+ TY+ +I  + KAG   + EE F  M   G++P+ + Y  ++  + + 
Sbjct: 490 SEMLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRF 549

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
               +  ++ +++ +  + LD   +  ++    +   VE +G +   M+E
Sbjct: 550 NEPKRAMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDMEE 599



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 143/311 (45%), Gaps = 2/311 (0%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E+A  +F  M+ DG  P+VD    L+ A    G LDE +  + +++ +   K    +  +
Sbjct: 830  ERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMG-FKISKSSILL 888

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            ++ +  +      ++KI   M   G   +   Y  +     + K+  ++E+  S M E  
Sbjct: 889  MLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEM-EEA 947

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            G  PD+   NS++  Y    +  K  + Y      G++ D  T N L   Y R    ++ 
Sbjct: 948  GFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEG 1007

Query: 191  RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             S+M  M+     P + TY  ++ +FGK   +E+ EE F++++ +G K +   Y +++  
Sbjct: 1008 FSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKI 1067

Query: 251  YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            Y  +G   K + +   ++++ V       + ++ +YG +G  ++  ++   +KE      
Sbjct: 1068 YRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETGSNLS 1127

Query: 311  NITFATMIQAY 321
             + ++++I AY
Sbjct: 1128 TLPYSSVIDAY 1138



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 115/247 (46%), Gaps = 4/247 (1%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           +A   +TI+   GKA +       F     S G    ++  N+M+  Y   G   K+++ 
Sbjct: 219 NARMLSTILSVLGKANQEALAVEVFMRAEPSAGNTVQVY--NAMMGVYARRGRFNKVQEL 276

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAG--MYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
            +     G K D+ + N L  +  +AG  M +    +++ +++    P  +TYN +I   
Sbjct: 277 LDLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISAC 336

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            +A ++E+  + F  M+    +P+  TY +++S Y + GL  K + +   +E+     D 
Sbjct: 337 SRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDA 396

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             +N ++ A+ + G+VEK+ E++  M +     D +T+ TMI  Y   G  E A  L   
Sbjct: 397 VSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRD 456

Query: 337 MIAMKEN 343
           M +   N
Sbjct: 457 MQSSGRN 463



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 133/303 (43%), Gaps = 2/303 (0%)

Query: 31   VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
            V+ AL+ AY  SG  + A +  N M       P V T + L+++     R D +  ++ E
Sbjct: 815  VWNALIEAYAASGCYERARAIFNTMMR-DGPSPTVDTINGLLQALIVDGRLDELYVVVQE 873

Query: 91   MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
            +  +G + S  +   ++D + +A    E++  +  M ++ G  P +     M        
Sbjct: 874  LQDMGFKISKSSILLMLDAFARAGNIFEVKKIYHGM-KAAGYFPTMHLYRVMARLLSRGK 932

Query: 151  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
             +  +E   +E    G K D+   N + K Y     + K   V   +++    P   TYN
Sbjct: 933  QVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYN 992

Query: 211  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             +I  + +    E+      +M+  G++P   TY SLV+++ K  L+ + + +  ++++ 
Sbjct: 993  TLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSK 1052

Query: 271  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
               LD  F++ ++  Y  +G   K   LF  MK+    P   T   ++ +Y + G  + A
Sbjct: 1053 GCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEA 1112

Query: 331  QNL 333
            + +
Sbjct: 1113 EKV 1115



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 120/252 (47%), Gaps = 6/252 (2%)

Query: 3    MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-- 60
            +L + KQ      +   M   G KP + ++ +++  Y     +++   TI   + + +  
Sbjct: 927  LLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVA---IEDFRKTIQVYQRIKEDG 983

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             +PD  TY+ LI    + HR +    ++ EM   G+E    TY +++  +GK +  E+ E
Sbjct: 984  LEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAE 1043

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              F  + +S GC  D    ++M+  Y NSG+  K E+ ++     GV+  I T+++L  S
Sbjct: 1044 ELFEEL-QSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVS 1102

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            YG +G   +   V+  +++     + + Y+ VI+ + + G      +   +MK  G++P+
Sbjct: 1103 YGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNIGIQKLIQMKKEGLEPD 1162

Query: 241  SITYCSLVSAYS 252
               +   + A S
Sbjct: 1163 HRIWTCFIRAAS 1174



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 118/290 (40%), Gaps = 37/290 (12%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           +  LI+ C +        ++ ++M + GI+ S   Y +++  Y K   F E         
Sbjct: 710 FESLIQCCLENELITEASQVFSDMRFCGIKASESLYESMVLLYCKMG-FPETAHHLIDFA 768

Query: 128 ESGGCHPDIFTLN-SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           ES G   +  +L  ++I AYG     +K E          +  D +  N L ++Y  +G 
Sbjct: 769 ESDGILLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGC 828

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYN-----------------------------------I 211
           Y++ R++ + M +    PTV T N                                   +
Sbjct: 829 YERARAIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQELQDMGFKISKSSILL 888

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +++ F +AG+I ++++ +  MK  G  P    Y  +    S+   +  V+++L ++E + 
Sbjct: 889 MLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAG 948

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
              D   +N ++  Y    D  K  +++  +KE    PD  T+ T+I  Y
Sbjct: 949 FKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMY 998



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 79/153 (51%), Gaps = 6/153 (3%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            +VM  +  +PE+   L   M   GL+P +D Y +LV+++G+  L+++A     +++S   
Sbjct: 995  IVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQS-KG 1053

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            CK D   Y  ++K           E++ + M   G+E +  T + ++  YG + + +E E
Sbjct: 1054 CKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAE 1113

Query: 121  SSFSAMVESGGCHPDIFTL--NSMISAYGNSGN 151
               S + E+G    ++ TL  +S+I AY  +G+
Sbjct: 1114 KVLSNLKETGS---NLSTLPYSSVIDAYLRNGD 1143



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 1/118 (0%)

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT-PFFN 280
           I +  + F  M+  G+K +   Y S+V  Y K G       ++   E+  ++L+    + 
Sbjct: 723 ITEASQVFSDMRFCGIKASESLYESMVLLYCKMGFPETAHHLIDFAESDGILLNNISLYV 782

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +I AYG+    +K   +   +++R    D   +  +I+AY A G  E A+ + N M+
Sbjct: 783 NVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMM 840


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 130/249 (52%), Gaps = 2/249 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+ ++ +  S L E M+ DG +P+V  Y  L+  YG +  L EA +  N+M+ V  C+
Sbjct: 386 ILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVG-CE 444

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI    K    D+   +   M   G+     TY+ II+  GKA         
Sbjct: 445 PDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWL 504

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MVE  GC P++ T N MI+    + N E   K Y++    G + D  T +I+ ++ G
Sbjct: 505 FCEMVEH-GCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALG 563

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  ++  SV   MQ++ + P    Y ++++ +GKAG++EK  E+++ M + G+ PN  
Sbjct: 564 HCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVP 623

Query: 243 TYCSLVSAY 251
           T  SL+SA+
Sbjct: 624 TCNSLLSAF 632



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 138/279 (49%), Gaps = 1/279 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           + D +TY+ ++    +  RFD I K+L +M   G + + VTYN +I  YG A   +E  +
Sbjct: 374 RHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALN 433

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F+ M E G C PD  T  ++I  +  +G I+     Y      G+  D  T +++    
Sbjct: 434 VFNEMQEVG-CEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCL 492

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+AG       +   M +    P +VTYNI+I    KA + E   + +  M++ G +P+ 
Sbjct: 493 GKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDK 552

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  ++ A    G + + +S+  +++  + + D P +  ++  +G+AG+VEK  E +  
Sbjct: 553 VTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQA 612

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           M     +P+  T  +++ A+  L     A NL   M+A+
Sbjct: 613 MLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVAL 651



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 152/333 (45%), Gaps = 28/333 (8%)

Query: 3   MLGKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD- 60
           +L + + P  A   F+ +    G +     YT +V   G++   D     +  M  V D 
Sbjct: 350 ILKQLQDPSVALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQM--VKDG 407

Query: 61  CKPDVYTYSILIK--SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           C+P+V TY+ LI    C  + +  L   +  EM  +G E   VTY T+ID + KA   + 
Sbjct: 408 CQPNVVTYNRLIHCYGCANYLKEAL--NVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDV 465

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             S +  M E+G   PD FT + +I+  G +GN+      + E    G   ++ T NI+ 
Sbjct: 466 AMSMYKRMQEAG-LSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMI 524

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               +A  Y+    +   MQ   F P  VTY+IV+E  G  G++E+ E  F +M+ +   
Sbjct: 525 ALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWV 584

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+   Y  LV  + KAG + K     + + N+ ++ + P  N ++SA             
Sbjct: 585 PDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSA------------- 631

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           FL +   H +PD      ++Q+  ALG+  + Q
Sbjct: 632 FLRL---HRLPDAY---NLVQSMVALGLRPSLQ 658



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 116/260 (44%), Gaps = 9/260 (3%)

Query: 82  DLIEKILAEMSYLGIECSAVTYNT--IIDGYGKAKKFEEMESS------FSAMVESGGCH 133
           +++  IL ++ + G       YN    +D Y   +  ++++        F  +    G  
Sbjct: 316 EVVSDILRQLRW-GPTAEKALYNLNFSMDAYQANQILKQLQDPSVALGFFDWLRRQPGFR 374

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
            D  T  +M+   G +   + + K   +    G + ++ T N L   YG A    +  +V
Sbjct: 375 HDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNV 434

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
            + MQ+    P  VTY  +I+   KAG I+     +K+M+  G+ P++ TY  +++   K
Sbjct: 435 FNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGK 494

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           AG +     +  ++     + +   +N +I+   +A + E   +L+  M+     PD +T
Sbjct: 495 AGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVT 554

Query: 314 FATMIQAYNALGMTEAAQNL 333
           ++ +++A    G  E A+++
Sbjct: 555 YSIVMEALGHCGYLEEAESV 574



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 4/208 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M  LG C   E+A  +F  M      P   VY  LV  +G++G +++A      M + + 
Sbjct: 559 MEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLN-AG 617

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+V T + L+ +  + HR      ++  M  LG+  S  TY  ++    +A+   +M 
Sbjct: 618 LLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLSCCTEAQPAHDMG 677

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKADIQTLNILTK 179
                M  +G  HP    L SM +A  +  N+ + + K+ +  +    +     ++ +  
Sbjct: 678 FFCELMAVTG--HPAHAFLLSMPAAGPDGQNVRDHVSKFLDMMHTEDREGKRGLVDSVVN 735

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
              ++G+ ++  SV +   +R  +P  V
Sbjct: 736 FLNKSGLKEEAGSVWEAAAQRNVYPDAV 763



 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 49/105 (46%)

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           +  G + +  TY ++V    +A     +  +L Q+       +   +N +I  YG A  +
Sbjct: 369 RQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYL 428

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++   +F  M+E  C PD +T+ T+I  +   G  + A ++  +M
Sbjct: 429 KEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRM 473


>gi|410110077|gb|AFV61118.1| pentatricopeptide repeat-containing protein 123, partial
           [Coelocarpum swinglei]
          Length = 440

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 156/350 (44%), Gaps = 41/350 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKS 74
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+ 
Sbjct: 2   LFDEMREKALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIEL 59

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG---- 130
             K   +     I + +   G     V YN +I+ +GKAK F +  S  S M  +G    
Sbjct: 60  SRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVMPN 119

Query: 131 ------------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
                                          C  D+ T N MI  YG  G  ++ +K + 
Sbjct: 120 ASSYSALLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFW 179

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
               MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK  
Sbjct: 180 GMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTL 239

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
             EK     ++M++RG++PNSITY +++S + K G + +   + +++  S V +D   F 
Sbjct: 240 EHEKANNLIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQ 299

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 300 TMIXAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 146/324 (45%), Gaps = 10/324 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K    A  L   M + G+ P+   Y+AL++ Y ++    EA S   +M+ +  C 
Sbjct: 94  VFGKAKLFRDARSLISEMRTAGVMPNASSYSALLTMYVENKKFLEALSVFAEMREIK-CL 152

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 153 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 212

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +      ++ T NSM+  YG +   EK      E    G++ +  T + +   +G
Sbjct: 213 FRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWG 271

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + G  D  R+ M F + R     +  + +  +I  + +AG +     + K++ H   +P+
Sbjct: 272 KIGKLD--RAAMLFQKLRTSGVEIDQILFQTMIXAYERAGLVA----HAKRLLHELKRPD 325

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +I   + +   + AG I +   + RQ  ++  + D   F  +I  + +      + E+F 
Sbjct: 326 NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVVEVFD 385

Query: 301 TMKERHCVPDNITFATMIQAYNAL 324
            M      PD+   A ++ AY  L
Sbjct: 386 KMYGLGYFPDSNVIALVLNAYGKL 409



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 158/372 (42%), Gaps = 75/372 (20%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  +A S I++M++ +   P+  +YS L+   
Sbjct: 72  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFRDARSLISEMRT-AGVMPNASSYSALLTMY 130

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 131 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 189

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 190 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 246

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++ AY 
Sbjct: 247 LIQEMQNRGIEPNSITYSTIISIWGKIGKLDRAAMLFQKLRTSGVEIDQILFQTMIXAYE 306

Query: 253 K-------------------------------AGLIMKVDSILRQVENSDVILDTPFFN- 280
           +                               AG I +   + RQ  ++  + D   F  
Sbjct: 307 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 366

Query: 281 ----------------------------------CIISAYGQAGDVEKMGELFLTMKERH 306
                                              +++AYG+  + +K  E+++ M++  
Sbjct: 367 MIHLFSKYKKYANVVEVFDKMYGLGYFPDSNVIALVLNAYGKLHEFDKANEVYMEMQDVG 426

Query: 307 CV-PDNITFATM 317
           CV  D + F  +
Sbjct: 427 CVFSDEVHFQML 438


>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia seriphioides]
          Length = 416

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 153/346 (44%), Gaps = 41/346 (11%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKF 78
           M    L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K 
Sbjct: 2   MRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKL 59

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-------- 130
             +     I + +   G     V YN +I+ +GKAK F E  S  S M  SG        
Sbjct: 60  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASY 119

Query: 131 --------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
                                      C  D+ T N MI  YG  G  ++ +K +     
Sbjct: 120 STLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK 179

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
           MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK
Sbjct: 180 MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEK 239

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
                ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I 
Sbjct: 240 ANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIV 299

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 300 AYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 341



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 9   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 68

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 69  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYV 127

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 128 ENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 187

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N +I  YG+  + EK   L   M
Sbjct: 188 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEM 247

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 248 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 282



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 150/333 (45%), Gaps = 10/333 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M   G+ P+   Y+ L++ Y ++    EA S  ++M+ V  C 
Sbjct: 90  VFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVENKKFLEALSVFSEMREVK-CL 148

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 149 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 208

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +      ++ T NSMI  YG +   EK      E    G++ +  T + +   +G
Sbjct: 209 FRLM-QRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWG 267

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + G  D  R+ M F + R     +  + +  +I  + +AG +     + K++ H   +P+
Sbjct: 268 KVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA----HAKRLLHELKRPD 321

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +I   + +   + AG I +   + RQ  ++  + D   F  +I    +      + E+F 
Sbjct: 322 NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFD 381

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            M+     PD+   A ++ AY  L   + A ++
Sbjct: 382 KMRGLGYFPDSDVIALVLNAYGKLHEFDKANDV 414



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%)

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E     +  D  T + L   +G+ G++D   S +  M++      +V Y+ +IE   K  
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 60

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
              K    F ++K  G  P+ + Y ++++ + KA L  +  S++ +++ S V+ +T  ++
Sbjct: 61  DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYS 120

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            +++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 TLLTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKL 173



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 103/255 (40%), Gaps = 31/255 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 162 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 220

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ +I    K    +    ++ EM   GIE +++TY+TII  +GK  K       F+
Sbjct: 221 VVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 280

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        F  M+   E  G              PD    ++ I     +G IE+
Sbjct: 281 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEE 340

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +     +   Y  +  V D M+   +FP      +V+ 
Sbjct: 341 ATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSDVIALVLN 400

Query: 215 TFGKAGHIEKMEEYF 229
            +GK    +K  + +
Sbjct: 401 AYGKLHEFDKANDVY 415


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 154/301 (51%), Gaps = 4/301 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+ P +  +  ++SA+       +A S    MK  +  +PD  T +I+I    K  
Sbjct: 247 MTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKG-THIRPDTTTLNIVIHCLVKLR 305

Query: 80  RFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           ++D   +I   M     EC+   VT+ +II  Y    + E  E++F+ M+ + G  P+I 
Sbjct: 306 QYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMI-AEGLKPNIV 364

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           + N++I AY   G   +   ++NE    G + DI +   L  +YGR+    K R + D M
Sbjct: 365 SYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRM 424

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++    P +V+YN +I+ +G  G +    +  ++M+  G++PN ++ C+L++A  +    
Sbjct: 425 KRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRK 484

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           +K+D++L   E   + L+T  +N  I +    G+ +K   L+ +M+++    D++T+  +
Sbjct: 485 VKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVL 544

Query: 318 I 318
           I
Sbjct: 545 I 545



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 149/333 (44%), Gaps = 37/333 (11%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C Q E     F +M+++GLKP++  Y AL+ AY   G+ +EA    N++K  +  +PD+ 
Sbjct: 341 CGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQ-NGFRPDI- 398

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
                                             V+Y ++++ YG+++K  +    F  M
Sbjct: 399 ----------------------------------VSYTSLLNAYGRSQKPHKARQIFDRM 424

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            +     P++ + N++I AYG++G +    K   E    G++ ++ ++  L  + GR   
Sbjct: 425 -KRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSR 483

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
             K+ +V+   + R      V YN  I +    G  +K    +K M+ + +K +S+TY  
Sbjct: 484 KVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTV 543

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+S   K     +  S + ++ +  + L    ++  I AY + G + +    F  MK   
Sbjct: 544 LISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSG 603

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           C PD +T+  M+ AYNA    E A  L  +M A
Sbjct: 604 CYPDVVTYTAMLDAYNAAENWEKAYALFEEMEA 636



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 139/340 (40%), Gaps = 38/340 (11%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           L+    Q G ++        +K+  + +     Y+++I+   + +R D    +  EM   
Sbjct: 121 LIKELTQRGSIEHCNRVFRWLKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEW 180

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
             +    TYN II+ +G+A ++    +    M+ +    P   T N++I+A G+SGN ++
Sbjct: 181 RCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAA-IPPSRSTYNNLINACGSSGNWKE 239

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
                 +    GV  D+ T NI+  ++     Y K  S  + M+     P   T NIVI 
Sbjct: 240 ALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIH 299

Query: 215 TFGK-------------------------------------AGHIEKMEEYFKKMKHRGM 237
              K                                      G +E  E  F  M   G+
Sbjct: 300 CLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGL 359

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           KPN ++Y +L+ AY+  G+  +      +++ +    D   +  +++AYG++    K  +
Sbjct: 360 KPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQ 419

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +F  MK     P+ +++  +I AY + G+   A  +  +M
Sbjct: 420 IFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREM 459



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+  N MI  +      ++    + E      K D++T N +  ++GRAG +    ++M
Sbjct: 152 DIY--NMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIM 209

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M +    P+  TYN +I   G +G+ ++     KKM   G+ P+ +T+  ++SA+   
Sbjct: 210 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSG 269

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER--HCVPDNI 312
               K  S    ++ + +  DT   N +I    +    +K  E+F +M+E+   C PD +
Sbjct: 270 AQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVV 329

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           TF ++I  Y+  G  E  +   N MIA
Sbjct: 330 TFTSIIHLYSVCGQVENCEAAFNMMIA 356



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 127/303 (41%), Gaps = 37/303 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C +  +   +       G+K +   Y A + +    G  D+A      M+     K D
Sbjct: 479 GRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRK-KKIKTD 537

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY++LI  C K  ++      + E+ +L +  S   Y++ I  Y K  +  E ES+F+
Sbjct: 538 SVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFN 597

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +S GC+PD+ T  +M+ AY  + N EK    + E     +K D      L +S+ + 
Sbjct: 598 LM-KSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKG 656

Query: 185 GMYDKMRSVMDFMQKR-------FFFPTVVTYNIV------------------------- 212
           G   ++ S+ + M+++        FF  V   +I+                         
Sbjct: 657 GQPGRVLSLAESMREKEIPFSDTIFFEMVSACSILQDWRTAVDMIKYIEPSLPVISSGCL 716

Query: 213 ---IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
              + + GK+G IE M + F KM   G   N  TY  L+     +G   K   +L+ +E+
Sbjct: 717 NQFLHSLGKSGKIETMLKLFFKMLASGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMED 776

Query: 270 SDV 272
           + +
Sbjct: 777 AGI 779


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 169/372 (45%), Gaps = 38/372 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ + A  L + M      P+   YTALV    ++G LDEA + +  M    +  P
Sbjct: 86  LCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGN-SP 144

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            + TY+++I   +K  R +   +I  +M   G    A  Y  +I G  K  K +E     
Sbjct: 145 TLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYL 204

Query: 124 SAMVESG---GCHPDIFTLNSMISAYGNSGNIEKMEKWYNE-----------FNLMGV-- 167
           + MVE+G   G  PD+   N +I     SGN+E    +++E           FN +    
Sbjct: 205 NQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAAL 264

Query: 168 -KAD--------------------IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
            KA+                    + T   L   + + G  D+    +    +R F P  
Sbjct: 265 CKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDA 324

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VTY  +I+   K G +E+  E F +M++RG +P+++TY +L+  + KA +I K   + RQ
Sbjct: 325 VTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQ 384

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +  S  ++ T  +N I+    +AG V +    FL M+ER CV   +T++ ++  + + G 
Sbjct: 385 MLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGN 444

Query: 327 TEAAQNLENKMI 338
             AA  L  +M+
Sbjct: 445 VSAAVELFRRML 456



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 141/320 (44%), Gaps = 3/320 (0%)

Query: 21  LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80
           L D L  +   +  LV+A  ++   +EA + +  M S   C P ++TY+ L+    K  R
Sbjct: 246 LDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKM-SERRCFPTLFTYTSLVDGFLKLGR 304

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            D     L E    G    AVTY +IIDG  K  + EE    F  M  + G  PD  T  
Sbjct: 305 LDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM-RNRGYEPDAVTYA 363

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           ++I  +  +  I K  + Y +    G      T NI+     +AG   +  +    M++R
Sbjct: 364 ALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEER 423

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
               TVVTY+ +++ F   G++    E F++M  RG +PN ++Y  ++    +AG + K 
Sbjct: 424 GCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKA 483

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG-ELFLTMKERHCVPDNITFATMIQ 319
                ++    +  D   FN  +    Q  D    G ELF +M  +   P+  +++ ++ 
Sbjct: 484 YFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMD 543

Query: 320 AYNALGMTEAAQNLENKMIA 339
                G  E    + ++M++
Sbjct: 544 GICRAGGLEVTLEIFHEMVS 563



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 144/354 (40%), Gaps = 38/354 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM---KSVSD 60
           L K  + E+A  +F  ML +G +P   VYTAL+S   + G LDEA   +N M        
Sbjct: 156 LSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARG 215

Query: 61  CKPDV----------------------------------YTYSILIKSCTKFHRFDLIEK 86
            +PDV                                  +T++ L+ +  K  R +    
Sbjct: 216 VEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIA 275

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
            + +MS      +  TY +++DG+ K  + +E        VE G   PD  T  S+I   
Sbjct: 276 FVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFI-PDAVTYTSIIDGL 334

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G +E+  + ++E    G + D  T   L   + +A M  K   V   M +     + 
Sbjct: 335 CKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVST 394

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VTYNI+++   KAG + +    F  M+ RG     +TY +L+  +   G +     + R+
Sbjct: 395 VTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRR 454

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           + +     +   +N II    +AG + K    F  + +R   PD  TF + +  
Sbjct: 455 MLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHG 508



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 142/340 (41%), Gaps = 39/340 (11%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + ++A L  +  +  G  P    YT+++    + G ++E     ++M++    +PD 
Sbjct: 301 KLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRN-RGYEPDA 359

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ LI    K        ++  +M   G   S VTYN I+DG  KA +  E  ++F A
Sbjct: 360 VTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLA 419

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M E  GC   + T ++++  + + GN+    + +      G + ++ + NI+ +   RAG
Sbjct: 420 M-EERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAG 478

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYN----------------------------------- 210
              K     + + +R   P V T+N                                   
Sbjct: 479 KLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSY 538

Query: 211 -IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
            I+++   +AG +E   E F +M  RG+ P+ + + +L+     AG + +   + R++E 
Sbjct: 539 SILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELER 598

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
                D   +  ++ A  +   +E+   L   MK + C P
Sbjct: 599 RSAP-DAWSYWSLLDALSRCERMEEARLLSFHMKLQGCAP 637



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 137/360 (38%), Gaps = 90/360 (25%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           V TAL++   ++G LD A   +++M     C PD+                         
Sbjct: 11  VCTALLNGLCKTGQLDRAMLLLDEMP----CSPDM------------------------- 41

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
                     V +  +I+G  + K+ +E  S     V +G C PD  T N  I     + 
Sbjct: 42  ----------VAFTVVINGLCREKRLDEAFSVLERAVRAG-CEPDYVTYNVFIDGLCKAE 90

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            ++   +   + +         T   L     +AG  D+  ++++ M ++   PT+ TY 
Sbjct: 91  RVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYT 150

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL----RQ 266
           +VI+   KAG +E+    F  M   G +P++  Y +L+S  +K G   K+D  L    + 
Sbjct: 151 VVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIG---KLDEALVYLNQM 207

Query: 267 VENS-------DVILD-----------------------------TPF-FNCIISAYGQA 289
           VEN        DV++                              T F FN +++A  +A
Sbjct: 208 VENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAALCKA 267

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
              E+       M ER C P   T+ +++  +  LG       L+  ++ +KE   +  I
Sbjct: 268 ERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLG------RLDEALLQLKEAVERGFI 321


>gi|410110099|gb|AFV61129.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           trifolia]
          Length = 440

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 157/349 (44%), Gaps = 39/349 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK-----------------SV 58
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                 S 
Sbjct: 2   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 61

Query: 59  SDCK-----------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
             C                  PD+  Y+ +I    K   F     ++ EM   G+  +  
Sbjct: 62  KXCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTA 121

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 122 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 180

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 181 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLE 240

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S   +D   F  
Sbjct: 241 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQT 300

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 345



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 13  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKXCDYSKAISI 72

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +      E    GV  +  + + L   Y 
Sbjct: 73  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLLTMYV 131

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 132 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 191

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 192 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 251

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 252 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 286



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 154/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK  +   P+  +YS L+   
Sbjct: 72  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKX-AGVMPNTASYSTLLTMY 130

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 131 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 189

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 190 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 246

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 247 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYE 306

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 307 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 366

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 367 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAXVLNAYGKLQEFDKANDVYMEM 422


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 153/307 (49%), Gaps = 2/307 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           AS L   M+   + P+V  ++AL+ A+ + G L EA    ++M   S   PD++TYS LI
Sbjct: 309 ASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLI 367

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                  R D  + +   M       + VTYNT+I G+ KAK+ EE    F  M + G  
Sbjct: 368 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRG-L 426

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             +  T N++I     +G+ +  +K + +    GV  DI T +IL     + G  +K   
Sbjct: 427 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 486

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V +++QK    P + TYNI+IE   KAG +E   + F  +  +G+KPN I Y +++S + 
Sbjct: 487 VFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC 546

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           + GL  + D++ R+++    + D+  +N +I A  + GD     EL   M+    V D  
Sbjct: 547 RKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDAS 606

Query: 313 TFATMIQ 319
           T + +I 
Sbjct: 607 TISMVIN 613



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 157/361 (43%), Gaps = 37/361 (10%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+   A  L + M+  G KP    +  L+          EA + ++ M     C+PD+ T
Sbjct: 164 KRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQ-RGCQPDLVT 222

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y  ++    K    DL   +L +M    IE   V YNTIIDG  K K  ++  + F+ M 
Sbjct: 223 YGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKM- 281

Query: 128 ESGGCHPDIFTLNSMIS-----------------------------------AYGNSGNI 152
           E+ G  PD+FT NS+IS                                   A+   G +
Sbjct: 282 ETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKL 341

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
            + EK Y+E     +  DI T + L   +      D+ + + + M  +  FP VVTYN +
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           I+ F KA  +E+  E F++M  RG+  N++TY +L+    +AG       I +++ +  V
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
             D   ++ ++    + G +EK   +F  +++    PD  T+  MI+     G  E   +
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 333 L 333
           L
Sbjct: 522 L 522



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 167/341 (48%), Gaps = 10/341 (2%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK+ +   A  L + M    ++  V +Y  ++    +   +D+AF+  N M++  
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMET-K 284

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +PDV+TY+ LI     + R+    ++L+ M    I  + VT++ +ID + K  K  E 
Sbjct: 285 GIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEA 344

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQTLNI 176
           E  +  M++     PDIFT +S+I+ +      +++++  + F LM  K    ++ T N 
Sbjct: 345 EKLYDEMIKRS-IDPDIFTYSSLINGFCMH---DRLDEAKHMFELMISKDCFPNVVTYNT 400

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L K + +A   ++   +   M +R      VTYN +I+   +AG  +  ++ FKKM   G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + P+ ITY  L+    K G + K   +   ++ S +  D   +N +I    +AG VE   
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +LF ++  +   P+ I + TMI  +   G+ E A  L  +M
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 148/320 (46%), Gaps = 2/320 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+  G +P +   ++L++ Y  S  + +A + ++ M  +   KPD  T++ LI      +
Sbjct: 141 MMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG-YKPDTVTFNTLIHGLFLHN 199

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +      ++ +M   G +   VTY  +++G  K    +   S    M E G    D+   
Sbjct: 200 KASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIY 258

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N++I       +I+     +N+    G++ D+ T N L       G +     ++  M +
Sbjct: 259 NTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIE 318

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R   P VVT++ +I+ F K G + + E+ + +M  R + P+  TY SL++ +     + +
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +   + + D   +   +N +I  + +A  VE+  ELF  M +R  V + +T+ T+IQ
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438

Query: 320 AYNALGMTEAAQNLENKMIA 339
                G  + AQ +  KM++
Sbjct: 439 GLFQAGDCDMAQKIFKKMVS 458



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 118/244 (48%), Gaps = 2/244 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ M+   + P +  Y++L++ +     LDEA      M S  DC P+V TY+ L
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS-KDCFPNVVTYNTL 401

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           IK   K  R +   ++  EMS  G+  + VTYNT+I G  +A   +  +  F  MV S G
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV-SDG 460

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PDI T + ++      G +EK    +       ++ DI T NI+ +   +AG  +   
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +   +  +   P V+ Y  +I  F + G  E+ +  F++MK  G  P+S  Y +L+ A 
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRAR 580

Query: 252 SKAG 255
            + G
Sbjct: 581 LRDG 584



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 1/245 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S V +N ++    K KKF+ +  S    +++     D+++ N +I+ +     +      
Sbjct: 79  SIVEFNKLLSAIAKMKKFD-LVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             +   +G + DI TL+ L   Y  +       +++D M +  + P  VT+N +I     
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFL 197

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
                +      +M  RG +P+ +TY ++V+   K G I    S+L+++E   +  D   
Sbjct: 198 HNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +N II    +   ++    LF  M+ +   PD  T+ ++I      G    A  L + MI
Sbjct: 258 YNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMI 317

Query: 339 AMKEN 343
             K N
Sbjct: 318 ERKIN 322


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 164/336 (48%), Gaps = 3/336 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-LLDEAFSTINDMKSVSDC 61
           +L + ++ ++   LFE M  +G + +   Y  ++  YG+ G   D   S   +MK + + 
Sbjct: 222 ILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDL-EI 280

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PD YTY+ +I +C +        ++  EM   G   + VTYN ++D YGK    +E  S
Sbjct: 281 SPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEA-S 339

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
                +E+ G  P+I T N +I+AY  +G  ++           G+  D  T   L  ++
Sbjct: 340 ELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAF 399

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            RA  Y+K       M+K    P +VTYNI+I+ +G+   ++ M + FK M+ +   P+ 
Sbjct: 400 NRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDL 459

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +T+ SL+ ++   G++ +V ++ R+++ +  +     FN +I  YG+ G V+   +++  
Sbjct: 460 VTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKG 519

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +      P   TFA ++ +    G  +  + +  +M
Sbjct: 520 LLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEM 555



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 165/336 (49%), Gaps = 3/336 (0%)

Query: 4   LGKCKQPEQASLLFE-VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           LG+  + ++A  +FE +   D  K       +++S  G    L  A      +K      
Sbjct: 151 LGRQGKWKKALEVFEWIRKHDCFKLRGVATASILSVLGNHEQLPAALELFESLKQDESYS 210

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMES 121
            DVY Y+ LI   ++  RFD    +   M   G   +AVTYN ++D YGK    ++ ++S
Sbjct: 211 LDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQS 270

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M +     PD +T N+MI+A   + + ++  + + E    G   +  T N L   Y
Sbjct: 271 LFQEMKDLE-ISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVY 329

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+ GM+ +   ++  M+     P +VTYN +I  + +AG  ++     K +  +G+ P+ 
Sbjct: 330 GKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDE 389

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TYC+L+SA+++A    K      ++  ++   +   +N +I  YG+   ++ M ++F  
Sbjct: 390 FTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKF 449

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M+E++C PD +T+ ++++++   GM     N+  +M
Sbjct: 450 MQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREM 485



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 172/408 (42%), Gaps = 73/408 (17%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK    ++AS L   M + G+ P++  Y  L++AY ++GL DEA +    + S   C PD
Sbjct: 330 GKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLC-PD 388

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            +TY  LI +  +  R++   +   EM       + VTYN +ID YG+ +K ++M   F 
Sbjct: 389 EFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFK 448

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E   C PD+ T NS++ ++GN G + ++   + E    G    + T NIL + YGR 
Sbjct: 449 FMQEKN-CTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRC 507

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIV-------------------------------- 212
           G  D    +   + +    PTV T+  +                                
Sbjct: 508 GYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACH 567

Query: 213 ---IETFGKAGHIEKMEEYFKKMKHRGMKPNS--------ITYC---------------- 245
              I ++  +G   ++ +Y  +++    +P S        + YC                
Sbjct: 568 AGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLY 627

Query: 246 ------------SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
                       +++S  +K G I +   +L ++  + +  D   +NC++S YG+ G   
Sbjct: 628 DNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYY 687

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           K  E+   M+     P+ IT+ T++ +Y   G  + A  +   M+A +
Sbjct: 688 KAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAAR 735



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 162/328 (49%), Gaps = 3/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  LF+ M   G  P+   Y AL+  YG+ G+  EA   + +M++     P++ TY+ 
Sbjct: 301 QEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAG-ISPNIVTYNE 359

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI +  +    D    +   +   G+     TY T+I  + +A+++E+   +F+ M ++ 
Sbjct: 360 LIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTN 419

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P+I T N +I  YG    ++ M K +          D+ T N L KS+G  GM  ++
Sbjct: 420 -CTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEV 478

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +V   M++  + P V T+NI+IE +G+ G+++   + +K +   G++P   T+ +L+++
Sbjct: 479 SNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMAS 538

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP- 309
            ++ G   + + + +++  + + L       +I +Y  +G   ++ +    +++    P 
Sbjct: 539 LAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPL 598

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
             I   T + AY   GM   AQ   N++
Sbjct: 599 SGILCKTFVLAYCKCGMDNEAQLALNQL 626



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 140/319 (43%), Gaps = 1/319 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            G C    + S +F  M   G  P VD +  L+  YG+ G +D +      +   +  +P
Sbjct: 469 FGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLR-TGLQP 527

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V T++ L+ S  +  R+   EK+  EM+  G++ S   +  +I  Y  + +F ++    
Sbjct: 528 TVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYI 587

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             + +S           + + AY   G   + +   N+    G   DI+  N +     +
Sbjct: 588 DELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAK 647

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  ++   +++ ++K    P  VTYN ++  +G+ G   K EE   +M+  G  PN IT
Sbjct: 648 RGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLIT 707

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+ +Y+K G +     +   +  + V  D   FN ++ +Y   G  ++   +   M 
Sbjct: 708 YNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMT 767

Query: 304 ERHCVPDNITFATMIQAYN 322
           E  C P  ITF  ++  YN
Sbjct: 768 EHGCQPTQITFKALLDGYN 786



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/390 (20%), Positives = 164/390 (42%), Gaps = 71/390 (18%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ L + +LS GL P    Y  L+SA+ ++   ++A  T  +M+  ++C P++ TY+I
Sbjct: 371 DEAAALKKSLLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRK-TNCTPNIVTYNI 429

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  + D + K+   M         VT+N+++  +G      E+ + F  M  +G
Sbjct: 430 LIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAG 489

Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                                             G  P + T  +++++    G  ++ E
Sbjct: 490 YMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCE 549

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK-----------RFFF-- 203
           K   E    G++        L  SY  +G + ++R  +D ++K           + F   
Sbjct: 550 KVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLA 609

Query: 204 -----------------------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                                  P +  +N +I    K G IE+  +  ++++   +KP+
Sbjct: 610 YCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPD 669

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY  L+S Y + G+  K + ++ ++  +    +   +N ++ +Y + G ++    +F 
Sbjct: 670 GVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFG 729

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAA 330
            M      PDN TF T++ +Y++LG+ + A
Sbjct: 730 DMVAARVRPDNFTFNTLVGSYSSLGLYKEA 759



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 87/171 (50%), Gaps = 1/171 (0%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEY 228
           D+     L     RA  +D+  ++ + MQ+       VTYN++++ +GK G   ++++  
Sbjct: 212 DVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSL 271

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F++MK   + P+  TY ++++A  +     +   + ++++ +    +   +N ++  YG+
Sbjct: 272 FQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGK 331

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            G  ++  EL + M+     P+ +T+  +I AY   G+ + A  L+  +++
Sbjct: 332 GGMHKEASELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLS 382



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M M G+     +A  +   M   G  P++  Y  L+ +Y + G +D+A     DM + + 
Sbjct: 677 MSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVA-AR 735

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112
            +PD +T++ L+ S +    +     ++  M+  G + + +T+  ++DGY +
Sbjct: 736 VRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGYNR 787


>gi|224141335|ref|XP_002324029.1| predicted protein [Populus trichocarpa]
 gi|222867031|gb|EEF04162.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 169/359 (47%), Gaps = 39/359 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------- 57
           + KQ + A  LF+ M +  L P    Y+ L++ +G++G+ D +   +  M+         
Sbjct: 119 RAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDASLFWLQQMEQDRVSGDLV 178

Query: 58  --------------------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
                                      S   PD+  Y+ +I    K   F   + ++ EM
Sbjct: 179 LYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEM 238

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
             +G+    V+Y+T++  Y + +KF E  S F+ M E+  C  D+ T N MI  YG    
Sbjct: 239 REVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAK-CPLDLTTCNVMIDVYGQLDM 297

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            ++ ++ +     MG++ ++ + N L + YG   ++ +   +   MQK+     VVTYN 
Sbjct: 298 AKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNT 357

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ +GK+   EK     ++M++RG++PN+ITY +++S + KAG + +   + +++ +S 
Sbjct: 358 MIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSG 417

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           V +D   +  +I AY ++G V     L   +K     PD+I   T I+     G  E A
Sbjct: 418 VEIDQVLYQTMIVAYERSGLVAHAKRLLHELKH----PDSIPRETAIKILARAGRIEEA 472



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 163/356 (45%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P +  Y ++++ +G++ L  EA   + +M+ V    PD  +YS L+   
Sbjct: 199 IFMRLKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVG-VMPDTVSYSTLLSVY 257

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM+         T N +ID YG+    +E +  F +M    G  P+
Sbjct: 258 VENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSM-RKMGIEPN 316

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG +   E   +  + F LM    ++ ++ T N + K YG++  ++K  +
Sbjct: 317 VVSYNTLLRVYGET---ELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATN 373

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +M  MQ R   P  +TY+ +I  +GKAG +++    F+K++  G++ + + Y +++ AY 
Sbjct: 374 LMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 433

Query: 253 KAGLIMKVDSILRQVENSDVIL-------------------------------DTPFFNC 281
           ++GL+     +L ++++ D I                                D   F C
Sbjct: 434 RSGLVAHAKRLLHELKHPDSIPRETAIKILARAGRIEEATWVFRQAFDAGEVKDISVFGC 493

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++  + +      + E+F  M+     PD+   A ++ AY  L   E A  L  +M
Sbjct: 494 MVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVIALVLNAYGKLHEFEKADALYKEM 549



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 147/337 (43%), Gaps = 34/337 (10%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           +VS   +      + + ++ +  ++   P V+ Y++++++  +  ++D    +  EM   
Sbjct: 77  MVSVISRESDWQRSLALLDWINDIARYSPSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNR 136

Query: 95  GIECSAVTYNTIIDGYGKAKKF-------EEMESS--------FSAMVE----------- 128
            +     TY+T+I  +GKA  F       ++ME          +S ++E           
Sbjct: 137 ALAPDRYTYSTLITHFGKAGMFDASLFWLQQMEQDRVSGDLVLYSNLIELSRKLCDYSKA 196

Query: 129 --------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                     G  PD+   NSMI+ +G +    + +    E   +GV  D  + + L   
Sbjct: 197 ISIFMRLKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSV 256

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y     + +  SV   M +      + T N++I+ +G+    ++ +  F  M+  G++PN
Sbjct: 257 YVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPN 316

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ++Y +L+  Y +  L  +   + R ++  D+  +   +N +I  YG++ + EK   L  
Sbjct: 317 VVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQ 376

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M+ R   P+ IT++T+I  +   G  + A  L  K+
Sbjct: 377 EMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKL 413



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 135/316 (42%), Gaps = 14/316 (4%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG++ L  EA      M+   D + +
Sbjct: 293 GQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQK-KDIEQN 351

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ +IK   K    +    ++ EM   GIE +A+TY+TII  +GKA K +     F 
Sbjct: 352 VVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQ 411

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +  S G   D     +MI AY  SG +   ++  +E        D        K   RA
Sbjct: 412 KL-RSSGVEIDQVLYQTMIVAYERSGLVAHAKRLLHELK----HPDSIPRETAIKILARA 466

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  ++   V            +  +  +++ F +      + E F+KM+  G  P+S   
Sbjct: 467 GRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVI 526

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF----- 299
             +++AY K     K D++ ++++  + +        ++S YG   D   +  LF     
Sbjct: 527 ALVLNAYGKLHEFEKADALYKEMQEEECVFPDEVHFQMLSLYGARKDFMMIEALFERLDS 586

Query: 300 ---LTMKERHCVPDNI 312
              +  KE H V  +I
Sbjct: 587 DPNINKKELHLVVASI 602


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 153/334 (45%), Gaps = 5/334 (1%)

Query: 8   KQPEQASLLFEVMLSDG---LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           K+ E+A  L   M  DG     P+V  Y  ++    ++  +D A   +  M      K D
Sbjct: 175 KRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMID-KGVKLD 233

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TYS +I    K    D  E +L  M   G++   VTYNTIIDG  KA+  +  E    
Sbjct: 234 VVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQ 293

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M++ G   PD+ T N++I     +  +++ +          VK DIQT N L   Y   
Sbjct: 294 HMIDKG-VKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLST 352

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G + ++   ++ M  R   P VVTY+++++   K G   +  + F  M  +G+KPN   Y
Sbjct: 353 GEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIY 412

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L+  Y+  G I  +  +L  +  + +  +   FN ++ AY +   +++   +F  M +
Sbjct: 413 GILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQ 472

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
               PD +T+  +I A   LG  + A    N+MI
Sbjct: 473 HGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI 506



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 148/337 (43%), Gaps = 2/337 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A  + + M+  G+KP V  Y  ++    ++  +D A   +  M    D KP
Sbjct: 279 LCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMID-KDVKP 337

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+ TY+ LI        +  + + L EM   G++   VTY+ ++D   K  K  E    F
Sbjct: 338 DIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIF 397

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+  G   P++     ++  Y   G I  +    +     G+  +    NI+  +Y +
Sbjct: 398 YCMIRKG-IKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAK 456

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
             M D+   +   M +    P VVTY I+I+   K G ++     F +M + G+ PNS+ 
Sbjct: 457 KAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVV 516

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + SLV          K + +  ++ +  V  +  FFN I+      G V     L  +M+
Sbjct: 517 FNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSME 576

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
                P+ I++ T+I  +   G T+ A  L + M+++
Sbjct: 577 RVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSV 613



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 143/313 (45%), Gaps = 5/313 (1%)

Query: 11  EQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           E A  LF  M    S+ ++P +  Y+ L   + + G ++  F+    +        +V  
Sbjct: 69  ELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVI 128

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
             +L   C      + ++ +L  M   G   + V+ NT++ G    K+ EE       M 
Sbjct: 129 NQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMA 188

Query: 128 ESGG--CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           E GG  C P++ T N++I     +  +++ E         GVK D+ T + +     +A 
Sbjct: 189 EDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQ 248

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D+   V+  M  +   P VVTYN +I+   KA  +++ E   + M  +G+KP+ +TY 
Sbjct: 249 AVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYN 308

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +++    KA  + + D +L+ + + DV  D   +NC+I  Y   G+ +++      M  R
Sbjct: 309 TIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYAR 368

Query: 306 HCVPDNITFATMI 318
              PD +T++ ++
Sbjct: 369 GLDPDVVTYSLLL 381



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 158/371 (42%), Gaps = 41/371 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A  + + M+  G+K  V  Y+ ++    ++  +D A   +  M      KP
Sbjct: 209 LCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMID-KGVKP 267

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TY+ +I    K    D  E +L  M   G++   VTYNTIIDG  KA+  +  +   
Sbjct: 268 DVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVL 327

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGN----IEKMEKWYNE--------FNLM------ 165
             M++     PDI T N +I  Y ++G     + ++E+ Y          ++L+      
Sbjct: 328 QHMIDKD-VKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCK 386

Query: 166 -----------------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
                            G+K ++    IL   Y   G    +  ++D M      P    
Sbjct: 387 NGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYI 446

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR--Q 266
           +NIV+  + K   I++    F +M   G+ P+ +TY  L+ A  K G +   D++L+  Q
Sbjct: 447 FNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVD--DAVLKFNQ 504

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + N  V  ++  FN ++         EK  ELF  M ++   P+ + F T++      G 
Sbjct: 505 MINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQ 564

Query: 327 TEAAQNLENKM 337
              AQ L + M
Sbjct: 565 VMVAQRLIDSM 575



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 142/330 (43%), Gaps = 37/330 (11%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  L + M   G++P+V  Y  L+  +  +G  DEA   ++ M SV   KPD+ +Y  L+
Sbjct: 568 AQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVG-LKPDLISYDTLL 626

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
           +   K  R D    +  EM   G+   AVTY+TI+ G    ++F E +  +  M++SG  
Sbjct: 627 RGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSG-- 684

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
                                  ++W           DI T NI+     +    D+   
Sbjct: 685 -----------------------QQW-----------DIYTYNIILNGLCKTNCVDEAFK 710

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   +  +   P ++T+ I+I+   K G  +   + F  +   G+ PN +TYC ++    
Sbjct: 711 IFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNII 770

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           + GL+ + D++   +E S    D+   N II +    G++ + G     + E +   +  
Sbjct: 771 QEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEAS 830

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIAMKE 342
           T + +I  ++       A++L  K + ++E
Sbjct: 831 TTSLLISLFSREEYKNHAKSLPEKYLFLEE 860



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 132/298 (44%), Gaps = 5/298 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GKC +  +   +F  M+  G+KP+V +Y  L+  Y   G + +  + + D+   +   P+
Sbjct: 388 GKCTEARK---IFYCMIRKGIKPNVTIYGILLHGYAARGAIAD-LTDLLDLMVANGISPN 443

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            Y ++I++ +  K    D    I + MS  G+    VTY  +ID   K  + ++    F+
Sbjct: 444 NYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFN 503

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+  G   P+    NS++         EK E+ + E    GV+ ++   N +  +    
Sbjct: 504 QMINDG-VTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNE 562

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G     + ++D M++    P V++YN +I     AG  ++  +    M   G+KP+ I+Y
Sbjct: 563 GQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISY 622

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            +L+  Y K G I     + R++    V      ++ I+          +  EL+L M
Sbjct: 623 DTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNM 680



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 143/332 (43%), Gaps = 4/332 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E     F ++L  G + +  V   L++    +  +DEA   +        C P+V + + 
Sbjct: 107 EHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNT 166

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLG---IECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           L+K      R +   ++L  M+  G      + VTYNTIIDG  KA+  +  E     M+
Sbjct: 167 LLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMI 226

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           + G    D+ T +++I     +  +++ E         GVK D+ T N +     +A   
Sbjct: 227 DKG-VKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAV 285

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D+   V+  M  +   P VVTYN +I+   KA  +++ +   + M  + +KP+  TY  L
Sbjct: 286 DRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCL 345

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  Y   G   +V   L ++    +  D   ++ ++    + G   +  ++F  M  +  
Sbjct: 346 IHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGI 405

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            P+   +  ++  Y A G      +L + M+A
Sbjct: 406 KPNVTIYGILLHGYAARGAIADLTDLLDLMVA 437



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 142/354 (40%), Gaps = 41/354 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A  + + M+   +KP +  Y  L+  Y  +G   E    + +M +     P
Sbjct: 314 LCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYA-RGLDP 372

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TYS+L+    K  +     KI   M   GI+ +   Y  ++ GY       ++    
Sbjct: 373 DVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLL 432

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV + G  P+ +  N ++ AY     I++    ++  +  G+  D+ T  IL  +  +
Sbjct: 433 DLMV-ANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCK 491

Query: 184 AGMYDKMRSVMDFMQ-----------------------------KRFFF--------PTV 206
            G  D   +V+ F Q                             +  FF        P V
Sbjct: 492 LGRVDD--AVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNV 549

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V +N ++      G +   +     M+  G++PN I+Y +L+  +  AG   +   +L  
Sbjct: 550 VFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDV 609

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           + +  +  D   ++ ++  Y + G ++    LF  M  +   P  +T++T++Q 
Sbjct: 610 MVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQG 663


>gi|410110149|gb|AFV61154.1| pentatricopeptide repeat-containing protein 123, partial
           [Xeroaloysia ovatifolia]
          Length = 431

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 156/345 (45%), Gaps = 39/345 (11%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---------------------- 57
           M    L P    Y+ L++ +G+ GL D A S +  M+                       
Sbjct: 3   MRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD 62

Query: 58  ------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
                        S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y T
Sbjct: 63  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTT 122

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           ++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     M
Sbjct: 123 LLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK 
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 241

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
               ++M++RG++PNSITY +++S + KAG + +   + +++ +S V +D   +  +I A
Sbjct: 242 NNLIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 301

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           Y +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 YEKAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 342



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 156/343 (45%), Gaps = 39/343 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +Y+ L+   
Sbjct: 69  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVMPNTASYTTLLTMY 127

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 128 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 186

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---TLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM  K  +Q   T N +   YG+   ++K  +
Sbjct: 187 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANN 243

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GKAG +++    F+K++  G++ + + Y +++ AY 
Sbjct: 244 LIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 303

Query: 253 KAGLIMKVDSILRQVENSDVI-------------------------------LDTPFFNC 281
           KAGL+     +L ++++ D I                                D   F  
Sbjct: 304 KAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVRDITVFER 363

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           +I  + +      + E+F  M+     PD+   A ++ AY  L
Sbjct: 364 MIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKL 406



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 10  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 69

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  +   L   Y 
Sbjct: 70  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYV 128

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 129 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 188

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  +++ +   +N ++  YG+  + EK   L   M
Sbjct: 189 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 248

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +   G  + A  L  K+
Sbjct: 249 QNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKL 283



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 81/174 (46%)

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           +E     +  D  T + L   +G+ G++D   S +  M++      +V Y+ +IE   K 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
               K    F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  +
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             +++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 TTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 174



 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  + ++A++LF+ + S G++    +Y  ++ AY ++GL+  A   ++++KS     
Sbjct: 266 IWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHAKRLLHELKS----- 320

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD       I       R +    +  +    G       +  +I  + K KK+  +   
Sbjct: 321 PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVRDITVFERMIHLFSKYKKYANVVEV 380

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           F  M    G  PD   +  +++AYG     +K    Y E   +G
Sbjct: 381 FDKM-RGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVG 423


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 152/306 (49%), Gaps = 6/306 (1%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD--LIEKI 87
            Y AL+ A  ++  L++A + ++ M+   D  P D   YS +I+S T+ ++ D  +++KI
Sbjct: 257 TYNALIGACARNDDLEKALNLMSRMRR--DGYPSDFVNYSFIIQSLTRTNKSDSSMLQKI 314

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
            AE+    IE      N II G+ K+        SF AMV+  G  P   TL ++I+A G
Sbjct: 315 YAEIESDKIELDGQLLNDIIVGFAKSGDVNRA-MSFLAMVQGNGLSPKTATLVAVITALG 373

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
           N+G  E+ E  + E    G+    +  N L K Y + G      S++  M++  F P   
Sbjct: 374 NAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEH 433

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY+++I+ +  AG  E      K+M+  G++PNS  +  ++++Y   G   K   +LR++
Sbjct: 434 TYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREM 493

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
            NS V  D  F+N +I  +G+   ++     F  M+     PD +T+ T+I  +   G  
Sbjct: 494 RNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHH 553

Query: 328 EAAQNL 333
             A+ L
Sbjct: 554 NKAEEL 559



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 159/350 (45%), Gaps = 34/350 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +  LG   + E+A  +FE +   GL P    Y AL+  Y ++G L +A S +++M+  S 
Sbjct: 369 ITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMER-SG 427

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD +TYS+LI +     R++    +L EM   G+  ++  ++ I+  Y    K+++  
Sbjct: 428 FSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQK-- 485

Query: 121 SSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            SF  + E  + G  PD    N MI  +G    ++     ++   + GV+ D  T N L 
Sbjct: 486 -SFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLI 544

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE-------KMEEY--- 228
             + ++G ++K   + + MQ+    P   TYNI+I +FG+    E       KM+     
Sbjct: 545 DCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLL 604

Query: 229 ------------------FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
                             F+ M+  G+KP+ +   SL++A+ +     +  S+L+ ++ +
Sbjct: 605 ANVVTYTTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKEN 664

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           D+  D   +  ++ A  +    +K+  ++  M    C PD    A +  A
Sbjct: 665 DLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSA 714



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 143/326 (43%), Gaps = 30/326 (9%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82
           +GL P      A+++A G +G  +EA +   ++K      P    Y+ L+K   K     
Sbjct: 356 NGLSPKTATLVAVITALGNAGRTEEAEAIFEELKE-GGLMPRTRAYNALLKGYVKTGSLK 414

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
             E I++EM   G      TY+ +ID Y  A ++E        M E+ G  P+ +  + +
Sbjct: 415 DAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEM-EASGVRPNSYVFSRI 473

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           +++Y + G  +K  +   E    GV  D    N++  ++G+    D   +  D M+    
Sbjct: 474 LASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGV 533

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P  VT+N +I+   K+GH  K EE F+ M+  G  P + TY  +++++ +      V +
Sbjct: 534 QPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKT 593

Query: 263 ILRQVENSDVILDTPFF----------------------------NCIISAYGQAGDVEK 294
           +L ++++  ++ +   +                            N +I+A+G+     +
Sbjct: 594 LLGKMQSQGLLANVVTYTTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAE 653

Query: 295 MGELFLTMKERHCVPDNITFATMIQA 320
              +   MKE    PD +T+ T+++A
Sbjct: 654 AFSVLQYMKENDLKPDVVTYTTLMKA 679



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 142/311 (45%), Gaps = 9/311 (2%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
           SD ++    +   ++  + +SG ++ A S +  M   +   P   T   +I +     R 
Sbjct: 320 SDKIELDGQLLNDIIVGFAKSGDVNRAMSFLA-MVQGNGLSPKTATLVAVITALGNAGRT 378

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           +  E I  E+   G+      YN ++ GY K    ++ ES  S M E  G  PD  T + 
Sbjct: 379 EEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEM-ERSGFSPDEHTYSL 437

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I AY N+G  E       E    GV+ +    + +  SY   G + K   V+  M+   
Sbjct: 438 LIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSG 497

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P    YN++I+TFGK   ++     F +M+  G++P+++T+ +L+  + K+G   K +
Sbjct: 498 VSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAE 557

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +   ++ S     T  +N +I+++G+    E +  L   M+ +  + + +T+ T     
Sbjct: 558 ELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTT----- 612

Query: 322 NALGMTEAAQN 332
             LG++E A N
Sbjct: 613 --LGLSEQAIN 621



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/239 (18%), Positives = 103/239 (43%), Gaps = 8/239 (3%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           Y+ +I   G+++K       + A + S        T N++I A   + ++EK     +  
Sbjct: 228 YSILIHALGRSEKL------YEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRM 281

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDK--MRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
              G  +D    + + +S  R    D   ++ +   ++           N +I  F K+G
Sbjct: 282 RRDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSG 341

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            + +   +   ++  G+ P + T  ++++A   AG   + ++I  +++   ++  T  +N
Sbjct: 342 DVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYN 401

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            ++  Y + G ++    +   M+     PD  T++ +I AY   G  E+A+ +  +M A
Sbjct: 402 ALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEA 460


>gi|410110073|gb|AFV61116.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           virgata]
          Length = 424

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 158/349 (45%), Gaps = 39/349 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 57
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 58  ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
                            S   PD+  Y+ +I    K   F     +++EM   G+  +  
Sbjct: 63  KLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTA 122

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK   
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLE 241

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK     ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  
Sbjct: 242 HEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQT 301

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +  AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 MXVAYERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 346



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 131/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 14  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 73

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 74  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 132

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 133 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 192

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  +++ +   +N ++  YG+  + EK   L   M
Sbjct: 193 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 252

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 253 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 287



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/357 (20%), Positives = 148/357 (41%), Gaps = 74/357 (20%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 73  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVMPNTASYSTLLTMY 131

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 132 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 190

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---TLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM  K  +Q   T N +   YG+   ++K  +
Sbjct: 191 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANN 247

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + + Y ++  AY 
Sbjct: 248 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMXVAYE 307

Query: 253 K-------------------------------AGLIMKVDSILRQVENSDVILDTPFFN- 280
           +                               AG I +   + RQ  ++  + D   F  
Sbjct: 308 RAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 367

Query: 281 ----------------------------------CIISAYGQAGDVEKMGELFLTMK 303
                                              +++AYG+  + +K   +++ M+
Sbjct: 368 MIHLFSKYKKYANVIEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQ 424



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 100/259 (38%), Gaps = 31/259 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   +   +
Sbjct: 167 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIVQN 225

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K +     F 
Sbjct: 226 VVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 285

Query: 125 AMVESGG--------------------CH----------PDIFTLNSMISAYGNSGNIEK 154
            +  SG                      H          PD    ++ I     +G IE+
Sbjct: 286 KLRSSGVEIDQVLYQTMXVAYERAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEE 345

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +   + +   Y  +  V D M+   +FP      +V+ 
Sbjct: 346 ATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVIEVFDKMRGLGYFPDSNVIALVLN 405

Query: 215 TFGKAGHIEKMEEYFKKMK 233
            +GK    +K    + +M+
Sbjct: 406 AYGKLHEFDKANGVYMEMQ 424


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 166/341 (48%), Gaps = 16/341 (4%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  Q   A  + + ML   + PS   Y  L++A G SG   EA +    M   +   PD
Sbjct: 196 GRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTD-NGVGPD 254

Query: 65  VYTYSILI---KSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           + T++I++   KS T++ +    F+LI+          I     T+N II    K K+++
Sbjct: 255 LVTHNIMLTAFKSGTQYSKALSYFELIKGT-------HIRPDTTTHNIIIHCLVKLKQYD 307

Query: 118 EMESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +    F++M E    CHPD+ T  SMI  Y   G+IE  E  +N     G+K +I + N 
Sbjct: 308 KAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNA 367

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L  +Y   GM ++   V + +++  F P VV+Y  ++  +G++   +K  E FK +K   
Sbjct: 368 LLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNN 427

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           +KPN ++Y +L+ AY   GL+     ILR++E   +  +      +++A G+ G   K+ 
Sbjct: 428 LKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKID 487

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +    + R    + + + + I +Y  +G  + A +L N M
Sbjct: 488 TVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSM 528



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 154/323 (47%), Gaps = 5/323 (1%)

Query: 11  EQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           E  +L+F  M +        D+Y  ++  + +    D+A     +M+    CKPD  TY+
Sbjct: 131 EHCNLVFSWMKNQKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKCR-CKPDAETYN 189

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            LI +  +  ++     I+ +M    I  S  TYN +I+  G +  ++E  +    M ++
Sbjct: 190 ALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDN 249

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G  PD+ T N M++A+ +     K   ++       ++ D  T NI+     +   YDK
Sbjct: 250 -GVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDK 308

Query: 190 MRSVMDFM--QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
              + + M  +K    P VVT+  +I  +   GHIE  E  F  M   G+KPN ++Y +L
Sbjct: 309 AVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNAL 368

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           + AY+  G+  +   +  +++ +    D   +  +++AYG++   +K  E+F  +K  + 
Sbjct: 369 LGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNL 428

Query: 308 VPDNITFATMIQAYNALGMTEAA 330
            P+ +++  +I AY + G+ E A
Sbjct: 429 KPNIVSYNALIDAYGSNGLLEDA 451



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 158/353 (44%), Gaps = 41/353 (11%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C   E     F +ML++GLKP++  Y AL+ AY   G+ +EA    N++K  +  +PDV 
Sbjct: 340 CGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQ-NGFRPDVV 398

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +Y+ L+ +  +  +     +I   +    ++ + V+YN +ID YG     E+       M
Sbjct: 399 SYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREM 458

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E    HP++ ++ ++++A G  G   K++   +   + G+K +    N    SY   G 
Sbjct: 459 -EQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGE 517

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIE------TFGKA--------------------- 219
           YDK   + + M+K+      VTY ++I        FG+A                     
Sbjct: 518 YDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSS 577

Query: 220 ------------GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
                       G I + E  F  MK  G  P+ +TY +++ AY+ A    K+ ++  ++
Sbjct: 578 IICAYSKQASALGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEM 637

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           E +DV LDT     ++ A+ + G   ++  L  +M+E+     +  F  M+ A
Sbjct: 638 EENDVKLDTIACAALMRAFNKGGQPGRVLSLAQSMREKDIPLSDTIFFEMVSA 690



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 142/292 (48%), Gaps = 8/292 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+ ++P++A  +F+++  + LKP++  Y AL+ AYG +GLL++A   + +M+      P+
Sbjct: 408 GRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQ-DKIHPN 466

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V +   L+ +C +  +   I+ +L+     GI+ + V YN+ I  Y    ++++    ++
Sbjct: 467 VVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYN 526

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           +M        D  T   +IS         +   +  E   + +    +  + +  +Y + 
Sbjct: 527 SM-RKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQ 585

Query: 185 ----GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               G   +  S  + M+     P VVTY  +++ +  A   EK+   F++M+   +K +
Sbjct: 586 ASALGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLD 645

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGD 291
           +I   +L+ A++K G   +V S+ + +   D+ L DT FF  ++SA G   D
Sbjct: 646 TIACAALMRAFNKGGQPGRVLSLAQSMREKDIPLSDTIFFE-MVSACGLLHD 696



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+  N MI  +      ++    + E      K D +T N L  ++GRAG +    ++M
Sbjct: 151 DIY--NMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIM 208

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M +    P+  TYN +I   G +G+ ++     KKM   G+ P+ +T+  +++A+   
Sbjct: 209 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSG 268

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER--HCVPDNI 312
               K  S    ++ + +  DT   N II    +    +K  ++F +MKE+   C PD +
Sbjct: 269 TQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVV 328

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           TF +MI  Y+  G  E  +   N M+A
Sbjct: 329 TFTSMIHLYSVCGHIENCEAAFNMMLA 355



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 121/290 (41%), Gaps = 41/290 (14%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C Q  +   +       G+K +   Y + + +Y   G  D+A    N M+     K D
Sbjct: 478 GRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRK-KKIKSD 536

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK----KFEEME 120
             TY++LI  C K  +F      + EM +L +  S   Y++II  Y K      +  E E
Sbjct: 537 SVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQIIEAE 596

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+F+ M +S GC PD+ T  +M+ AY  +   EK+   + E     VK D      L ++
Sbjct: 597 STFNLM-KSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIACAALMRA 655

Query: 181 YGRAGMYDKMRSVMDFMQKR--------FF-------------------------FPTVV 207
           + + G   ++ S+   M+++        FF                          P + 
Sbjct: 656 FNKGGQPGRVLSLAQSMREKDIPLSDTIFFEMVSACGLLHDWKTAVDMIKYMEPSLPVIS 715

Query: 208 T--YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
           +   N+ + + GK+G IE M + F KM   G + N  TY  L+     +G
Sbjct: 716 SGCLNLFLNSLGKSGKIEIMLKLFFKMLASGAEVNFNTYSILLKNLLSSG 765


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 156/316 (49%), Gaps = 2/316 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G+ P +  Y  L+SAY   GL++EAF  +N M       P VYTY+ +I    K  +++ 
Sbjct: 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPG-KGFSPGVYTYNTVINGLCKHGKYER 323

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            +++ AEM   G+   + TY +++    K     E E  FS M  S    PD+   +SM+
Sbjct: 324 AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDM-RSRDVVPDLVCFSSMM 382

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           S +  SGN++K   ++N     G+  D     IL + Y R GM     ++ + M ++   
Sbjct: 383 SLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCA 442

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
             VVTYN ++    K   + + ++ F +M  R + P+S T   L+  + K G +     +
Sbjct: 443 MDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMEL 502

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
            ++++   + LD   +N ++  +G+ GD++   E++  M  +  +P  I+++ ++ A  +
Sbjct: 503 FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCS 562

Query: 324 LGMTEAAQNLENKMIA 339
            G    A  + ++MI+
Sbjct: 563 KGHLAEAFRVWDEMIS 578



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 150/310 (48%), Gaps = 4/310 (1%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSV-SDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88
           D  + L+    +SG+       +N + S  S+C  +   + +LI++  +  +     +  
Sbjct: 131 DAQSCLLRMIRRSGV--SRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAF 188

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
             +   G   S    N +I    +    E     +  +  SG    +++TLN M++A   
Sbjct: 189 TLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSG-VGINVYTLNIMVNALCK 247

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G +EK+  + ++    GV  DI T N L  +Y   G+ ++   +M+ M  + F P V T
Sbjct: 248 DGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYT 307

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN VI    K G  E+ +E F +M   G+ P+S TY SL+    K G +++ + +   + 
Sbjct: 308 YNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMR 367

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
           + DV+ D   F+ ++S + ++G+++K    F ++KE   +PDN+ +  +IQ Y   GM  
Sbjct: 368 SRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMIS 427

Query: 329 AAQNLENKMI 338
            A NL N+M+
Sbjct: 428 VAMNLRNEML 437



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 162/354 (45%), Gaps = 6/354 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +++  CK+ +  +   +F  M S  + P +  +++++S + +SG LD+A    N +K  +
Sbjct: 346 LLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE-A 404

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD   Y+ILI+   +     +   +  EM   G     VTYNTI+ G  K K   E 
Sbjct: 405 GLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEA 464

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +  F+ M E     PD +TL  +I  +   GN++   + + +     ++ D+ T N L  
Sbjct: 465 DKLFNEMTERA-LFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLD 523

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +G+ G  D  + +   M  +   PT ++Y+I++      GH+ +    + +M  + +KP
Sbjct: 524 GFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKP 583

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
             +   S++  Y ++G     +S L ++ +   + D   +N +I  + +  ++ K   L 
Sbjct: 584 TVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLV 643

Query: 300 LTMKERH--CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
             M+E     VPD  T+ +++  +      + A+ +  KMI    N  +    C
Sbjct: 644 KKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTC 697



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 154/332 (46%), Gaps = 2/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + ++  +A   F ++ S G   S+D   AL+ +  + G ++ A+    ++ S S    +V
Sbjct: 177 QARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI-SRSGVGINV 235

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YT +I++ +  K  + + +   L+++   G+    VTYNT+I  Y      EE     +A
Sbjct: 236 YTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNA 295

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M    G  P ++T N++I+     G  E+ ++ + E    G+  D  T   L     + G
Sbjct: 296 M-PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKG 354

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              +   V   M+ R   P +V ++ ++  F ++G+++K   YF  +K  G+ P+++ Y 
Sbjct: 355 DVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 414

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+  Y + G+I    ++  ++      +D   +N I+    +   + +  +LF  M ER
Sbjct: 415 ILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 474

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              PD+ T   +I  +  LG  + A  L  KM
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKM 506



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 6/323 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK    E+A  +F  ML  GL P    Y +L+    + G + E     +DM+S  
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRS-R 369

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           D  PD+  +S ++   T+    D        +   G+    V Y  +I GY +       
Sbjct: 370 DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVA 429

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            +  + M++ G C  D+ T N+++        + + +K +NE     +  D  TL IL  
Sbjct: 430 MNLRNEMLQQG-CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILID 488

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + + G       +   M+++     VVTYN +++ FGK G I+  +E +  M  + + P
Sbjct: 489 GHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILP 548

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
             I+Y  LV+A    G + +   +  ++ + ++       N +I  Y ++G+    GE F
Sbjct: 549 TPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASD-GESF 607

Query: 300 L-TMKERHCVPDNITFATMIQAY 321
           L  M     VPD I++ T+I  +
Sbjct: 608 LEKMISEGFVPDCISYNTLIYGF 630



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 4/294 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML  G    V  Y  ++    +  +L EA    N+M   +   PD YT +ILI    K  
Sbjct: 436 MLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERA-LFPDSYTLTILIDGHCKLG 494

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
                 ++  +M    I    VTYNT++DG+GK    +  +  ++ MV S    P   + 
Sbjct: 495 NLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMV-SKEILPTPISY 553

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           + +++A  + G++ +  + ++E     +K  +   N + K Y R+G      S ++ M  
Sbjct: 554 SILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMIS 613

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR--GMKPNSITYCSLVSAYSKAGLI 257
             F P  ++YN +I  F +  ++ K     KKM+    G+ P+  TY S++  + +   +
Sbjct: 614 EGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQM 673

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + + +LR++    V  D   + C+I+ +    ++ +   +   M +R   PD+
Sbjct: 674 KEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 6/254 (2%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK+    +A  LF  M    L P     T L+  + + G L  A      MK   
Sbjct: 451 ILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKE-K 509

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             + DV TY+ L+    K    D  ++I A+M    I  + ++Y+ +++         E 
Sbjct: 510 RIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEA 569

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              +  M+ S    P +   NSMI  Y  SGN    E +  +    G   D  + N L  
Sbjct: 570 FRVWDEMI-SKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIY 628

Query: 180 SYGRAGMYDKMRSVMDFMQKR--FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            + R     K   ++  M++      P V TYN ++  F +   +++ E   +KM  RG+
Sbjct: 629 GFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGV 688

Query: 238 KPNSITYCSLVSAY 251
            P+  TY  +++ +
Sbjct: 689 NPDRSTYTCMINGF 702



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 8/205 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK    + A  ++  M+S  + P+   Y+ LV+A    G L EAF   ++M S  + KP
Sbjct: 525 FGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMIS-KNIKP 583

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V   + +IK   +       E  L +M   G     ++YNT+I G+ +    E M  +F
Sbjct: 584 TVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVRE---ENMSKAF 640

Query: 124 SAMV----ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
             +     E GG  PD+FT NS++  +     +++ E    +    GV  D  T   +  
Sbjct: 641 GLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMIN 700

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFP 204
            +       +   + D M +R F P
Sbjct: 701 GFVSQDNLTEAFRIHDEMLQRGFSP 725



 Score = 40.8 bits (94), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 1/123 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-VSDCKPDVYTYSILIKS 74
             E M+S+G  P    Y  L+  + +   + +AF  +  M+       PDV+TY+ ++  
Sbjct: 607 FLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHG 666

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             + ++    E +L +M   G+     TY  +I+G+       E       M++ G    
Sbjct: 667 FCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726

Query: 135 DIF 137
           D F
Sbjct: 727 DKF 729


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 166/345 (48%), Gaps = 15/345 (4%)

Query: 1   MVMLGKCKQPEQASLLF---EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           + +LGK  Q   A  +F   E +++D    +V VY A++  Y ++G  ++     N M+ 
Sbjct: 237 LSVLGKANQEGIAVEIFAKAESVIAD----TVQVYNAMMGVYARNGNFEKVNEMFNLMRE 292

Query: 58  VSDCKPDVYTYSILI----KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113
              C+PD+ +++ LI    KSC       L  ++L E+   G+    +TYNT+I    + 
Sbjct: 293 -RGCEPDIVSFNTLINAKVKSCATVS--GLAIELLDEVGKFGLRPDIITYNTLISACSRE 349

Query: 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
              +E    FS M ES  C PD++T N+MIS YG  G   K E  + +    G   D  T
Sbjct: 350 SNLKEAIGVFSHM-ESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVT 408

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L  ++ + G  +K+R + + M K  F    +TYN +I  +GK G  ++    ++ MK
Sbjct: 409 YNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMK 468

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G  P+++TY  L+    KA  I +   ++ ++ ++ V      ++ +I AY + G   
Sbjct: 469 SSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRV 528

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  E F  M+E     D++ ++ M+  +      + A  L  +MI
Sbjct: 529 EAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMI 573



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 150/316 (47%), Gaps = 2/316 (0%)

Query: 25   LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
            LK S      ++ A+ Q+G L E     N MK+     P ++ Y ++I    +F R   +
Sbjct: 890  LKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYF-PTMHLYRLMIGLLCRFKRVRDV 948

Query: 85   EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
              +L+EM   G +     +N+++  Y   ++F+ M   +  M++  G  PD  T N++I+
Sbjct: 949  RVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQ-MIQDAGLAPDEETYNTLIT 1007

Query: 145  AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
             Y      E+     ++   +G++    T   +  ++ +  +YD+   + + ++   +  
Sbjct: 1008 MYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKL 1067

Query: 205  TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
                Y+++++ +  +G  +K E   + MK  G++PN+ T   L+ +Y K+G   + D IL
Sbjct: 1068 DRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRIL 1127

Query: 265  RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            + +     +LDT  ++ +I AY + GD +   E    MKE    PD+  +   I+A +  
Sbjct: 1128 KNLRTMGAVLDTLPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLS 1187

Query: 325  GMTEAAQNLENKMIAM 340
            G    A NL N + A+
Sbjct: 1188 GEVNDANNLLNALQAV 1203



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 121/255 (47%), Gaps = 5/255 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  M S+  +P +  Y A++S YG+ G   +A      +KS +   PD  TY+ L+ + 
Sbjct: 358 VFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKS-NGFSPDAVTYNSLLYAF 416

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           +K    + +  I  EM  +G     +TYNTII  YGK  + +E    +  M +S G +PD
Sbjct: 417 SKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDM-KSSGRNPD 475

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T   +I   G +  IE+  K  +E    GVK  + T + L  +Y + G   +     +
Sbjct: 476 AVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFN 535

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M++       + Y+++++ F +   I+K    +++M   G  P++  Y  ++ A  +  
Sbjct: 536 RMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVREN 595

Query: 256 LIMKVDSILRQVENS 270
           +    D I R V+++
Sbjct: 596 M---GDVIERVVQDT 607



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 108/240 (45%), Gaps = 3/240 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C    +A  LFE + S+G  P    Y +L+ A+ + G  ++      +M  +   K D
Sbjct: 382 GRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGK-D 440

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ +I    K  R D   ++  +M   G    AVTY  +ID  GKA K EE     S
Sbjct: 441 EMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMS 500

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+++G   P + T +++I AY   G   + E+ +N     G+KAD    +++   + R 
Sbjct: 501 EMLDAG-VKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRF 559

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSIT 243
               K  ++   M +  F P    Y +++    +    + +E   +  K  G M P+ I+
Sbjct: 560 NEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERVVQDTKELGSMNPHDIS 619



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 153/336 (45%), Gaps = 7/336 (2%)

Query: 3    MLGKCKQPEQ---ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
            ++ +C + EQ   AS LF  M  +G++PS  +Y ++VS Y + G  + A   +   +  +
Sbjct: 723  LIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETAQHLLYHAEK-N 781

Query: 60   DCKPDVYTYSIL--IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            D   D  T  I+  I++  K   +   E I+  +     +     +N +I  Y  +  +E
Sbjct: 782  DIILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYE 841

Query: 118  EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
               + F+ M+  G   P + ++N ++ A    G + ++     E   M +K    ++ ++
Sbjct: 842  RARAIFNTMMREGPS-PTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLM 900

Query: 178  TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             +++ +AG   +++ V + M+   +FPT+  Y ++I    +   +  +     +M   G 
Sbjct: 901  LEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGF 960

Query: 238  KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            KP+   + S++  YS       +  I + ++++ +  D   +N +I+ Y +    E+   
Sbjct: 961  KPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLS 1020

Query: 298  LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            L   MK     P   T+ +MI A++   + + A+ L
Sbjct: 1021 LMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEEL 1056



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 2/206 (0%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR--AGMYDKMRSVMDFM 197
           N+M+  Y  +GN EK+ + +N     G + DI + N L  +  +  A +      ++D +
Sbjct: 268 NAMMGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGLAIELLDEV 327

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
            K    P ++TYN +I    +  ++++    F  M+    +P+  TY +++S Y + G  
Sbjct: 328 GKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFA 387

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           +K + +  +++++    D   +N ++ A+ + G+ EK+ ++   M +     D +T+ T+
Sbjct: 388 LKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTI 447

Query: 318 IQAYNALGMTEAAQNLENKMIAMKEN 343
           I  Y   G  + A  L   M +   N
Sbjct: 448 IHMYGKHGRHDEALRLYRDMKSSGRN 473



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 143/372 (38%), Gaps = 41/372 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK  + E+AS +   ML  G+KP++  Y+AL+ AY + G   EA  T N M+  S  K
Sbjct: 485 LLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRE-SGIK 543

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D   YS+++    +F+       +  EM   G       Y  ++    +    + +E  
Sbjct: 544 ADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERV 603

Query: 123 FSAMVESGGCHP-DIFTLNSMISAYGNSGNIEK--MEKWYN------------------- 160
                E G  +P DI ++      Y +   + K  +   Y                    
Sbjct: 604 VQDTKELGSMNPHDISSVLVKGGCYDHGAKMLKVAISNGYELDREIFLSIMSSYSSSARY 663

Query: 161 -------EFNLMGVKADIQTLN-----ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
                  EF       DIQ +      IL K+       ++ RS          F +   
Sbjct: 664 SEACELVEFFREHAPDDIQMITEALIIILCKAGKLDAALEEYRSRGGLGT----FRSCTM 719

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y  +I    K+   +   + F  M+  G++P+   Y S+VS Y + G       +L   E
Sbjct: 720 YESLIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCRIGFPETAQHLLYHAE 779

Query: 269 NSDVILD--TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
            +D+ILD  T     II  YG+    +    +   +++R    D   +  +I AY   G 
Sbjct: 780 KNDIILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGC 839

Query: 327 TEAAQNLENKMI 338
            E A+ + N M+
Sbjct: 840 YERARAIFNTMM 851



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 105/236 (44%), Gaps = 11/236 (4%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            + M  +  +PE+   L   M S GL+P  D Y ++++A+ +  L D+A     +++S + 
Sbjct: 1006 ITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRS-NG 1064

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             K D   Y +++K           E +L  M   GIE +  T + ++  YGK+ + EE +
Sbjct: 1065 YKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEAD 1124

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                 +  + G   D    +S+I AY   G+ +   +   E     ++ D +      ++
Sbjct: 1125 RILKNL-RTMGAVLDTLPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRA 1183

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH--IEKMEEYFKKMKH 234
               +G  +   ++++ +Q        V +++ I   G+     + ++++   +++H
Sbjct: 1184 ASLSGEVNDANNLLNALQ-------AVGFDLPIRLLGEKSESLVSEVDQCLGRLEH 1232



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/293 (18%), Positives = 117/293 (39%), Gaps = 45/293 (15%)

Query: 31  VYTALVSAYGQSGLLD---EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           +  AL+    ++G LD   E + +   + +   C      Y  LI  CTK  +FD+  ++
Sbjct: 684 ITEALIIILCKAGKLDAALEEYRSRGGLGTFRSCT----MYESLIHECTKSEQFDIASQL 739

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
            ++M + G+E S   Y                                     SM+S Y 
Sbjct: 740 FSDMRFNGVEPSECLYQ------------------------------------SMVSVYC 763

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNIL--TKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
             G  E  +          +  D  T++I+   ++YG+  M+    S+++ +++R     
Sbjct: 764 RIGFPETAQHLLYHAEKNDIILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQRCSKMD 823

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
              +N +I  +  +G  E+    F  M   G  P   +   L+ A    G + ++  +++
Sbjct: 824 RKVWNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNGLLQALIVDGRLSELYVVIQ 883

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           ++++ D+ +       ++ A+ QAG++ ++ +++  MK     P    +  MI
Sbjct: 884 ELQDMDLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMI 936


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 169/342 (49%), Gaps = 9/342 (2%)

Query: 4   LGKCKQPEQASLLFEVM-LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           L K  + E+A  +FE M  S    P+V  YT +++   + G LD A   + D+ + + C 
Sbjct: 110 LVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELL-DLMNETGCC 168

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V TYS+L++   K  R D    +L EM+  G +   + YNT+++G  K+++ +E    
Sbjct: 169 PNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALEL 228

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+ SG C+P + T NS++  +  S  +++  +     +  G   D+   N +     
Sbjct: 229 VQLMIRSG-CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLC 287

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE---KME---EYFKKMKHRG 236
           R    D  ++++  M      P V+TY+ +I+   K   ++   K+E   E  + MK  G
Sbjct: 288 RDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTG 347

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             PN+ TY  ++    +A    +  ++LR++ +S+V+ D   F+ +I +  ++ D++   
Sbjct: 348 CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAY 407

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++F  M ER C P+ + +A +I   +  G  + A  +   M+
Sbjct: 408 KIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMV 449



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 129/282 (45%), Gaps = 2/282 (0%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P+ +TY  LI    K  + D   ++L EM   GI      +N +I G  KA +F +  
Sbjct: 26  CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDAL 85

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTK 179
             F   V    C PDI T N ++ A   SG +E+  + +   +       ++ T   +  
Sbjct: 86  GYFKT-VAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVIN 144

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G  D+   ++D M +    P V+TY++++E   KAG  +K     ++M  RG +P
Sbjct: 145 GLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQP 204

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + I Y +L++   K+  + +   +++ +  S        +N ++  + ++  V++   L 
Sbjct: 205 DVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLI 264

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
             M ER C PD I + T+I         + AQ L  +M+A +
Sbjct: 265 QVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAAR 306



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 155/334 (46%), Gaps = 8/334 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L +  Q  QA  LF     +   P+   Y +L+    ++G LD+A+  +++M+      
Sbjct: 7   LLVRAGQHGQAVQLFR---EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD-RGIP 62

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEME 120
           P V  ++ +I+   K  RF   + +    +  G +C+   +T+N ++D   K+ + EE  
Sbjct: 63  PGVAVHNGVIRGLCKAGRFG--DALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAF 120

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F +M  S  C P++ T  ++I+     G +++  +  +  N  G   ++ T ++L + 
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             +AG  DK  +++  M +R F P V+ YN ++    K+  +++  E  + M   G  P 
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPT 240

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY SL+  + ++  + +   +++ +       D   +N +I+   +   ++    L  
Sbjct: 241 VVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLK 300

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
            M    CVPD IT++T+I         +A   LE
Sbjct: 301 QMVAARCVPDVITYSTIIDGLCKDWRVDADWKLE 334



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 157/353 (44%), Gaps = 23/353 (6%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + ++   L + M   G +P V +Y  L++   +S  LDEA   +  M   S C 
Sbjct: 180 GLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIR-SGCY 238

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V TY+ L++   +  + D   +++  MS  G     + YNT+I G  +  + ++ ++ 
Sbjct: 239 PTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQAL 298

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIE---KMEKWYNEFNLM---GVKADIQTLNI 176
              MV +  C PD+ T +++I        ++   K+E       +M   G   +  T  +
Sbjct: 299 LKQMV-AARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAV 357

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           + +   RA    +  +++  M      P + ++++VI +  K+  ++   + F  M  R 
Sbjct: 358 VIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERE 417

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILR----QVENSDVILDTPFFNCIISAYGQAGDV 292
            KPN + Y +L+   SK G   +VD  +R     VE+    + T  +N ++      G +
Sbjct: 418 CKPNPVAYAALIDGLSKGG---EVDKAVRVFELMVESFRPGVAT--YNSVLDGLCGVGRI 472

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA----QNLENKMIAMK 341
           E+   +   M  + C PD  ++  +I+    +   E A    Q +E K  AM+
Sbjct: 473 EEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAME 525



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 9/290 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +  + KQ ++A  L +VM   G  P V  Y  +++   +   LD+A + +  M + + 
Sbjct: 248 MELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVA-AR 306

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEK------ILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           C PDV TYS +I    K  R D   K      IL  M   G   +A TY  +I+G  +A+
Sbjct: 307 CVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRAR 366

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           K ++  +    M++S    PD+ + + +I +   S +++   K +   +    K +    
Sbjct: 367 KSQQALALLRRMIDS-EVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAY 425

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
             L     + G  DK   V + M +  F P V TYN V++     G IE+     + M H
Sbjct: 426 AALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIH 484

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
           +   P+  +Y +L+    +   + +   + + VE     ++   +N +++
Sbjct: 485 KECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVN 534



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 3/228 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  + E+M   G  P+   Y  ++    ++    +A + +  M   S+  PD+ ++S+
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID-SEVVPDLSSFSM 392

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I S  K H  D   KI   MS    + + V Y  +IDG  K  + ++    F  MVES 
Sbjct: 393 VIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESF 452

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P + T NS++      G IE+  +            D  +   L +   R    ++ 
Sbjct: 453 --RPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEA 510

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             +   ++ + F   V  YN+++    K   +        K+   G K
Sbjct: 511 YELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558


>gi|356569143|ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 160/359 (44%), Gaps = 39/359 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------- 57
           + KQ   A  LF+ M   GL P    Y+ L++++G+ GL D +   +  M+         
Sbjct: 147 RAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLV 206

Query: 58  --------------------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
                                      S   PD+  Y+ +I    K   F     +L EM
Sbjct: 207 LYSNLIDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVFGKAKLFREARLLLQEM 266

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
               ++   V+Y+T++  Y   +KF E  S F  M E+  C  D+ T N MI  YG    
Sbjct: 267 RDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAK-CPLDLTTCNIMIDVYGQLHM 325

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            ++ ++ +     MG++ ++ + N L + YG A ++ +   +   MQ +     VVTYN 
Sbjct: 326 PKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNT 385

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I  +GK    EK     ++MK RG++PN+ITY +++S + KAG + +   + +++ +S 
Sbjct: 386 MINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSG 445

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           V +D   +  +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 446 VRIDEVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIGILARAGRIEEA 500



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 133/310 (42%), Gaps = 36/310 (11%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P ++ Y++L+++  +  ++ L   +  EM   G+     TY+T+I  +GK   F+     
Sbjct: 133 PSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFW 192

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E      D+   +++I       +  K    ++      +  D+   N +   +G
Sbjct: 193 LQQM-EQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVFG 251

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTY--------------------------------- 209
           +A ++ + R ++  M+     P  V+Y                                 
Sbjct: 252 KAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLDLT 311

Query: 210 --NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
             NI+I+ +G+    ++ +  F  M+  G++PN ++Y +L+  Y +A L  +   + R +
Sbjct: 312 TCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLM 371

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           ++ DV  +   +N +I+ YG+  + EK   L   MK+R   P+ IT++T+I  +   G  
Sbjct: 372 QSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKL 431

Query: 328 EAAQNLENKM 337
           + A  L  K+
Sbjct: 432 DRAAILFQKL 441



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 136/320 (42%), Gaps = 22/320 (6%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+   P++A  LF  M   G++P+V  Y  L+  YG++ L  EA      M+S  D + +
Sbjct: 321 GQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQS-KDVQQN 379

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ +I    K    +    ++ EM   GIE +A+TY+TII  + KA K +     F 
Sbjct: 380 VVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQ 439

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +  S G   D     +MI AY  +G +   ++  +E            + IL     RA
Sbjct: 440 KL-RSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIGIL----ARA 494

Query: 185 GMYDK----MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           G  ++     R   D  + +     +  +  +I  F K      + E F+KM+  G  P+
Sbjct: 495 GRIEEATWVFRQAFDAREVK----DISVFGCMINLFSKNKKYGNVVEVFEKMRVVGYFPD 550

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF- 299
           S     +++A+ K     K D++ RQ+     +        ++S YG   D   +  LF 
Sbjct: 551 SDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMVESLFE 610

Query: 300 -------LTMKERHCVPDNI 312
                  +  KE H V  +I
Sbjct: 611 KLDSNPNINKKELHLVVASI 630



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 74/157 (47%), Gaps = 1/157 (0%)

Query: 182 GRAGMYDKMRSVMDFMQ-KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            R   + +  +++D++  K  + P++  YN+++    +A         F +M+ +G+ P+
Sbjct: 110 SREPDWQRALALLDWINDKALYSPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPD 169

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY +L++++ K GL       L+Q+E  +V  D   ++ +I    +  D  K   +F 
Sbjct: 170 RYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFS 229

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +K     PD I + +MI  +    +   A+ L  +M
Sbjct: 230 RLKASTISPDLIAYNSMINVFGKAKLFREARLLLQEM 266


>gi|410110089|gb|AFV61124.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           macropoda]
          Length = 427

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 156/349 (44%), Gaps = 39/349 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------------------ 57
           LF+ M    L P    Y+ L++ +G+ GL D A S +  M+                   
Sbjct: 3   LFDEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSR 62

Query: 58  ----------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
                            S   PD+  Y+ +I    K   F     ++ EM   G+  +  
Sbjct: 63  KLCDYSKAISIFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTX 122

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +Y+T++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +  
Sbjct: 123 SYSTLLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWG 181

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              MG++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +   +GK   
Sbjct: 182 MRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLE 241

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK     ++M+ RG++PNSITY +++S + K G + +   + +++ +S + +D   F  
Sbjct: 242 HEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQT 301

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I AY +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 MIVAYERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 346



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 14  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 73

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS + +SG   PD+   N+MI+ +G +    +      E    GV  +  + + L   Y 
Sbjct: 74  FSRLKKSGFT-PDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYV 132

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 133 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 192

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N +   YG+  + EK   L   M
Sbjct: 193 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLEHEKANNLIQEM 252

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 253 QSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 287



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+   
Sbjct: 73  IFSRLKKSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA-AGVMPNTXSYSTLLTMY 131

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 132 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 190

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 191 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMXMIYGKTLEHEKANN 247

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 248 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYE 307

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 308 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 367

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 368 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 423



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 106/262 (40%), Gaps = 31/262 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 167 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 225

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ +     K    +    ++ EM   GIE +++TY+TII  +GK  K       F+
Sbjct: 226 VVTYNSMXMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 285

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        F  M+   E  G              PD    ++ I     +G IE+
Sbjct: 286 KLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEE 345

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +     +   Y  +  V D M+   +FP      IV+ 
Sbjct: 346 ATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 405

Query: 215 TFGKAGHIEKMEEYFKKMKHRG 236
            +GK    +K  + + +M+  G
Sbjct: 406 AYGKLQEFDKANDVYMEMQEVG 427


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 154/315 (48%), Gaps = 2/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P   +YT ++  + ++GL+ +A    ++M     C PDV TY+ L+    K  R   
Sbjct: 11  GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG-CLPDVVTYNTLLNGLCKERRLLD 69

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            E +L EM   G+     T+ T+I GY    K ++    F  M+      PDI T N++I
Sbjct: 70  AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR-LRPDIVTYNTLI 128

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 G+++K    +++ +   +  +  T +IL  S+   G  +     +D M  +   
Sbjct: 129 DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL 188

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P ++TYN +I+ + ++G++ K +++ +KM    + P+ ITY +L+  Y K   +     +
Sbjct: 189 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 248

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L  +E   V  D   +N +I+ +   G+V++ G +F  M  +   PD  T+ +MI  +  
Sbjct: 249 LNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVT 308

Query: 324 LGMTEAAQNLENKMI 338
            G ++ A  L ++M+
Sbjct: 309 AGNSKEAFQLHDEML 323



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%)

Query: 158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
           +  E    G+  D     ++   + RAG+      V D M      P VVTYN ++    
Sbjct: 3   YLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC 62

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           K   +   E    +M+ RG+ P+  T+ +L+  Y   G + K   +   + N  +  D  
Sbjct: 63  KERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIV 122

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +N +I    + GD++K  +L+  M  R   P+++T++ +I ++   G  E A    ++M
Sbjct: 123 TYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEM 182

Query: 338 I 338
           I
Sbjct: 183 I 183



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 101/254 (39%), Gaps = 36/254 (14%)

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
           L EM   G+    V Y  +I G+ +A    +       MV   GC PD+ T N++++   
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMV-GCGCLPDVVTYNTLLNGLC 62

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
               +   E   NE                                   M++R   P + 
Sbjct: 63  KERRLLDAEGLLNE-----------------------------------MRERGVPPDLC 87

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           T+  +I  +   G ++K  + F  M ++ ++P+ +TY +L+    + G + K + +   +
Sbjct: 88  TFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDM 147

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
            + ++  +   ++ +I ++ + G VE        M  +  +P+ +T+ ++I+ Y   G  
Sbjct: 148 HSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNV 207

Query: 328 EAAQNLENKMIAMK 341
              Q    KM+  K
Sbjct: 208 SKGQKFLQKMMVNK 221



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 1/122 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
             + M+ + + P +  Y  L+  Y +   + +AF  +N M+     +PDV TY++LI   
Sbjct: 213 FLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEK-EKVQPDVVTYNMLINGF 271

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           +          I  +M   GIE    TY ++I+G+  A   +E       M++ G    D
Sbjct: 272 SVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDD 331

Query: 136 IF 137
            F
Sbjct: 332 KF 333


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 169/342 (49%), Gaps = 9/342 (2%)

Query: 4   LGKCKQPEQASLLFEVM-LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           L K  + E+A  +FE M  S    P+V  YT +++   + G LD A   + D+ + + C 
Sbjct: 110 LVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELL-DLMNETGCC 168

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V TYS+L++   K  R D    +L EM+  G +   + YNT+++G  K+++ +E    
Sbjct: 169 PNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALEL 228

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+ SG C+P + T NS++  +  S  +++  +     +  G   D+   N +     
Sbjct: 229 VQLMIRSG-CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLC 287

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE---KME---EYFKKMKHRG 236
           R    D  ++++  M      P V+TY+ +I+   K   ++   K+E   E  + MK  G
Sbjct: 288 RDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTG 347

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             PN+ TY  ++    +A    +  ++LR++ +S+V+ D   F+ +I +  ++ D++   
Sbjct: 348 CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAY 407

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++F  M ER C P+ + +A +I   +  G  + A  +   M+
Sbjct: 408 KIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMV 449



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 129/282 (45%), Gaps = 2/282 (0%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P+ +TY  LI    K  + D   ++L EM   GI      +N +I G  KA +F +  
Sbjct: 26  CVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDAL 85

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTK 179
             F   V    C PDI T N ++ A   SG +E+  + +   +       ++ T   +  
Sbjct: 86  GYFKT-VAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVIN 144

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G  D+   ++D M +    P V+TY++++E   KAG  +K     ++M  RG +P
Sbjct: 145 GLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQP 204

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + I Y +L++   K+  + +   +++ +  S        +N ++  + ++  V++   L 
Sbjct: 205 DVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLI 264

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
             M ER C PD I + T+I         + AQ L  +M+A +
Sbjct: 265 QVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAAR 306



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 155/334 (46%), Gaps = 8/334 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L +  Q  QA  LF     +   P+   Y +L+    ++G LD+A+  +++M+      
Sbjct: 7   LLVRAGQHGQAVQLFR---EERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD-RGIP 62

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEME 120
           P V  ++ +IK   K  RF   + +    +  G +C+   +T+N ++D   K+ + EE  
Sbjct: 63  PGVAVHNGVIKGLCKAGRFG--DALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAF 120

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F +M  S  C P++ T  ++I+     G +++  +  +  N  G   ++ T ++L + 
Sbjct: 121 QIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEG 180

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             +AG  DK  +++  M +R F P V+ YN ++    K+  +++  E  + M   G  P 
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPT 240

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY SL+  + ++  + +   +++ +       D   +N +I+   +   ++    L  
Sbjct: 241 VVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLK 300

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
            M    CVPD IT++T+I         +A   LE
Sbjct: 301 QMVAARCVPDVITYSTIIDGLCKDWRVDADWKLE 334



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 157/353 (44%), Gaps = 23/353 (6%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + ++   L + M   G +P V +Y  L++   +S  LDEA   +  M   S C 
Sbjct: 180 GLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIR-SGCY 238

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V TY+ L++   +  + D   +++  MS  G     + YNT+I G  +  + ++ ++ 
Sbjct: 239 PTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQAL 298

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIE---KMEKWYNEFNLM---GVKADIQTLNI 176
              MV +  C PD+ T +++I        ++   K+E       +M   G   +  T  +
Sbjct: 299 LKQMV-AARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAV 357

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           + +   RA    +  +++  M      P + ++++VI +  K+  ++   + F  M  R 
Sbjct: 358 VIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERE 417

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILR----QVENSDVILDTPFFNCIISAYGQAGDV 292
            KPN + Y +L+   SK G   +VD  +R     VE+    + T  +N ++      G +
Sbjct: 418 CKPNPVAYAALIDGLSKGG---EVDKAVRVFELMVESFRPGVAT--YNSVLDGLCGVGRI 472

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA----QNLENKMIAMK 341
           E+   +   M  + C PD  ++  +I+    +   E A    Q +E K  AM+
Sbjct: 473 EEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAME 525



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 9/290 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +  + KQ ++A  L +VM   G  P V  Y  +++   +   LD+A + +  M + + 
Sbjct: 248 MELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVA-AR 306

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEK------ILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           C PDV TYS +I    K  R D   K      IL  M   G   +A TY  +I+G  +A+
Sbjct: 307 CVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRAR 366

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           K ++  +    M++S    PD+ + + +I +   S +++   K +   +    K +    
Sbjct: 367 KSQQALALLRRMIDS-EVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAY 425

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
             L     + G  DK   V + M +  F P V TYN V++     G IE+     + M H
Sbjct: 426 AALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIH 484

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
           +   P+  +Y +L+    +   + +   + + VE     ++   +N +++
Sbjct: 485 KECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVN 534



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 3/228 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  + E+M   G  P+   Y  ++    ++    +A + +  M   S+  PD+ ++S+
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMID-SEVVPDLSSFSM 392

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I S  K H  D   KI   MS    + + V Y  +IDG  K  + ++    F  MVES 
Sbjct: 393 VIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESF 452

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P + T NS++      G IE+  +            D  +   L +   R    ++ 
Sbjct: 453 --RPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEA 510

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             +   ++ + F   V  YN+++    K   +        K+   G K
Sbjct: 511 YELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIEAGYK 558


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 165/341 (48%), Gaps = 19/341 (5%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSG-----------------LLDEAFSTINDMKSV 58
           +F+ M +  + P V  YT ++SA+ + G                 LLDEA      M   
Sbjct: 211 VFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVD- 269

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PD+YTY ILI       R    + +L EM  +G++   +TYN +IDG+ +    E+
Sbjct: 270 KGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQ 329

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  MV + G   ++   N++++    +G +EK  +   E    GV+ D QT ++L 
Sbjct: 330 AFRIKDEMV-ACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLI 388

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           + + R     +   ++D M+KR   PTV+TY+++I    + G+++      ++M   G+K
Sbjct: 389 EGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLK 448

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN++ Y +L++A++K G + +   IL ++    ++ D   +N +I  + +A  +E+    
Sbjct: 449 PNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTY 508

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            + M ER   P+  T+   I  Y+  G  E A    N+M++
Sbjct: 509 LMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLS 549



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 162/341 (47%), Gaps = 5/341 (1%)

Query: 1   MVMLGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G C+    A    L + M    L P+V  Y+ +++   + G L    + + +M  +
Sbjct: 386 LLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREM-VM 444

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +  KP+   Y+ L+ +  K  R +    IL  M   GI      YN++I G+ KAK+ EE
Sbjct: 445 NGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEE 504

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             +    M+E     P+  T  + I  Y  +G +E  ++++NE    GV  ++     L 
Sbjct: 505 ARTYLMEMLERR-LRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALI 563

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           + + + G   +  SV  F+  R     V TY+++I    + G + +    F +++ +G+ 
Sbjct: 564 EGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLL 623

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN+ TY SL+S   K G + K   +L ++    +  D   +N +I    +AG++E+   L
Sbjct: 624 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNL 683

Query: 299 FLTMKERHCVPDNITFATMIQAY-NALGMTEAAQNLENKMI 338
           F  ++ R   P+ +T+A M+  Y  +   T A Q LE  ++
Sbjct: 684 FDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLL 724



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 165/348 (47%), Gaps = 7/348 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+    +A  +F  +LS  +   V  Y+ L+    ++G + EAF   ++++      
Sbjct: 565 GHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQE-KGLL 623

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+ +TY+ LI    K    D   ++L EM   GI    VTYN +IDG  KA + E  ++ 
Sbjct: 624 PNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNL 683

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F   +E  G  P+  T  +M+  Y  S N     +   E  L GV  D    N++     
Sbjct: 684 FDD-IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCC 742

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +   ++K   +   M ++ F  TV ++N +IE + K+G +++     ++M  +   PN +
Sbjct: 743 KEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHV 801

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+    KAG++ +   +  +++  +V+     +  ++  Y   G++ ++  LF  M
Sbjct: 802 TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 861

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI--AMKENSGKKL 348
             +   PD +T+  MI AY   G    A  L+++++   M   SG +L
Sbjct: 862 VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRL 909



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 164/370 (44%), Gaps = 38/370 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +C   +  + +   M+ +GLKP+  VYT L++A+ + G ++E+   +  M+      P
Sbjct: 426 LCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMRE-QGILP 484

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV+ Y+ LI    K  R +     L EM    +  +A TY   IDGY KA + E  +  F
Sbjct: 485 DVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYF 544

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M+ S G  P++    ++I  +   GN+ +    +       V  D+QT ++L     R
Sbjct: 545 NEML-SCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSR 603

Query: 184 -----------------------------------AGMYDKMRSVMDFMQKRFFFPTVVT 208
                                               G  DK   +++ M  +   P +VT
Sbjct: 604 NGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVT 663

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YNI+I+   KAG IE+ +  F  ++ RG+ PN +TY ++V  Y K+        +L ++ 
Sbjct: 664 YNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEML 723

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              V  D   +N I++   +    EK  +LF  M E+      ++F T+I+ Y   G  +
Sbjct: 724 LRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG-FASTVSFNTLIEGYCKSGKLQ 782

Query: 329 AAQNLENKMI 338
            A +L  +MI
Sbjct: 783 EANHLLEEMI 792



 Score = 38.5 bits (88), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 34/183 (18%), Positives = 77/183 (42%), Gaps = 17/183 (9%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            ++L  SY + G   +  +V    +   F P++++ N ++    K   +E   + F  M 
Sbjct: 157 FDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMC 216

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSIL-----------------RQVENSDVILDT 276
              + P+  TY +++SA+ K G +     +L                 R + +  ++ D 
Sbjct: 217 AHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDL 276

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             ++ +I+ +       +   + L M +    P+ IT+  +I  +   G  E A  ++++
Sbjct: 277 YTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDE 336

Query: 337 MIA 339
           M+A
Sbjct: 337 MVA 339


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 167/338 (49%), Gaps = 7/338 (2%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   + A  L  +M++ G++P+V  Y+AL+    +S    EA   + +MK+ S   
Sbjct: 136 GFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKA-SGVT 194

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD +TYS LI    K  + +  E++L  M+  G     V Y++II  + K+ K  E + +
Sbjct: 195 PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKT 254

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSY 181
              M +     PD+ T N++I      G I + +   ++    G V  D+ T + +    
Sbjct: 255 LQEMRKQRK-SPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGL 313

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            ++ M  + + ++D M K    P VVTY  +I+   K G +E+ E   + MK  G  PN 
Sbjct: 314 CKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNV 373

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L+S   KA  + + + ++ ++ N+    +   +N +++    +G +++  +L   
Sbjct: 374 VTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQR 433

Query: 302 MKE--RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           MK+    C PD  T+ T++ A  +  + + A+ L  +M
Sbjct: 434 MKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 151/323 (46%), Gaps = 6/323 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L E M S G  P    +T +++A   +G LD A   +  M     C P+V TY+ LI + 
Sbjct: 12  LLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM----GCDPNVVTYTALIAAF 67

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  + +   K+L EM   G   + VTYN ++D   K       +     M+E GG  P+
Sbjct: 68  ARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE-GGFAPN 126

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T NS++  +   GN++   K        G++ ++ T + L     ++  + + + V++
Sbjct: 127 VMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLE 186

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+     P   TY+ +I    KA  IE+ E+  ++M   G  P+ + Y S++ A+ K+G
Sbjct: 187 EMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSG 246

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER-HCVPDNITF 314
            +++    L+++       D   +N +I    + G + +   +   M+E    +PD +T+
Sbjct: 247 KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTY 306

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
           +T+I       M   AQ L ++M
Sbjct: 307 STVINGLCKSDMLVEAQKLLDRM 329



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 5/296 (1%)

Query: 42  SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
           +G L  A   + +MKS +   PD +T++ +I +       D     +  +  +G + + V
Sbjct: 3   AGDLHAALELLEEMKS-AGFAPDAFTHTPIITAMANAGDLD---GAMDHLRSMGCDPNVV 58

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           TY  +I  + +AKK EE       M E G C P++ T N ++ A      +   +    +
Sbjct: 59  TYTALIAAFARAKKLEEAMKLLEEMRERG-CPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G   ++ T N L   + + G  D  R ++  M  +   P VVTY+ +I+   K+  
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
             + +E  ++MK  G+ P++ TY +L+    KA  I + + +LR++  S    D   ++ 
Sbjct: 178 FLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSS 237

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           II A+ ++G + +  +    M+++   PD +T+ T+I     LG    AQ + ++M
Sbjct: 238 IIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQM 293



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
           AG +    E  ++MK  G  P++ T+  +++A + AG    +D  +  + +     +   
Sbjct: 3   AGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAG---DLDGAMDHLRSMGCDPNVVT 59

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  +I+A+ +A  +E+  +L   M+ER C P+ +T+  ++ A   L M  AAQ++  KMI
Sbjct: 60  YTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI 119



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L KC + E+A  L + M   G  P+V  YT L+S   ++  +DEA   + +M++ + C P
Sbjct: 348 LCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRN-AGCPP 406

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMES 121
           ++ TY+ ++       R    ++++  M     ECS  A TY TI++    +   +E E 
Sbjct: 407 NLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQ 466

Query: 122 SFSAM 126
               M
Sbjct: 467 LLEQM 471


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 157/333 (47%), Gaps = 8/333 (2%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P++A  +F  ++ +G KPS+  YT LV+A  +        S I+ ++  +  KPD   +
Sbjct: 357 RPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEK-NGLKPDTILF 415

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I + ++    D   KI  +M   G + +A T+NT+I GYGK  K EE       M+ 
Sbjct: 416 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLR 475

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                P+  T N ++ A+ N   IE+      +    GVK D+ T N L K+Y R G   
Sbjct: 476 DEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIG--- 532

Query: 189 KMRSVMDFMQKRFFF----PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              +  D +  R       P V T   ++  + + G +E+   +F +MK  G+ PN   +
Sbjct: 533 STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVF 592

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+  +     +  V  ++  +E   V  D   F+ +++A+   GD+++  E++  M E
Sbjct: 593 NSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLE 652

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               PD   F+ + + Y   G  E A+ + N+M
Sbjct: 653 GGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 685



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 163/330 (49%), Gaps = 9/330 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           GK  + E++S L ++ML D  L+P+      LV A+     ++EA++ +  M+S    KP
Sbjct: 458 GKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYG-VKP 516

Query: 64  DVYTYSILIKSCTKFHRFDLIEK-ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           DV T++ L K+  +       E  I+  M +  ++ +  T  TI++GY +  K EE    
Sbjct: 517 DVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRF 576

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M E  G HP++F  NS+I  + N  +++ + +  +     GVK D+ T + L  ++ 
Sbjct: 577 FYRMKEL-GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWS 635

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G   +   +   M +    P +  ++I+ + + +AG  EK E+   +M+  G++PN +
Sbjct: 636 SVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVV 695

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGELF 299
            Y  ++S +  AG + K   + +++    ++  +P    +  +I  +G+A    K  EL 
Sbjct: 696 IYTQIISGWCSAGEMKKAMQVYKKM--CGIVGLSPNLTTYETLIWGFGEAKQPWKAEELL 753

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEA 329
             M+ ++ VP   T   +   + ++G++ +
Sbjct: 754 KDMEGKNVVPTRKTMQLIADGWKSIGVSNS 783



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 157/344 (45%), Gaps = 15/344 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA  +FE M   G KP+   +  L+  YG+ G L+E+   ++ M      +P+  T +I
Sbjct: 429 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 488

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++     + +    I+ +M   G++   VT+NT+   Y +       E      +   
Sbjct: 489 LVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHN 548

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T  ++++ Y   G +E+  +++     +GV  ++   N L K +      D +
Sbjct: 549 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 608

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V+D M++    P VVT++ ++  +   G +++ EE +  M   G+ P+   +  L   
Sbjct: 609 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 668

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--- 307
           Y++AG   K + IL Q+    V  +   +  IIS +  AG+++K  +++  M    C   
Sbjct: 669 YARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM----CGIV 724

Query: 308 --VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
              P+  T+ T+I  +        A+ L      +K+  GK ++
Sbjct: 725 GLSPNLTTYETLIWGFGEAKQPWKAEEL------LKDMEGKNVV 762



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 101/214 (47%), Gaps = 2/214 (0%)

Query: 122 SFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           SF  ++ SGG    D+ +   +++     G  ++    +N     G K  + T   L  +
Sbjct: 327 SFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTA 386

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             R   +  + S++  ++K    P  + +N +I    ++G++++  + F+KMK  G KP 
Sbjct: 387 LTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPT 446

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF 299
           + T+ +L+  Y K G + +   +L  +   +++  +    N ++ A+     +E+   + 
Sbjct: 447 ASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIV 506

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             M+     PD +TF T+ +AY  +G T  A+++
Sbjct: 507 YKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDM 540



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 66/119 (55%)

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G  ++    F  +   G KP+ ITY +LV+A ++      + S++ +VE + +  DT  F
Sbjct: 356 GRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILF 415

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           N II+A  ++G++++  ++F  MKE  C P   TF T+I+ Y  +G  E +  L + M+
Sbjct: 416 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMML 474


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 161/323 (49%), Gaps = 2/323 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
            FE M  +   P+V  Y  ++ AY +   +DEAF  +  M  +   +P++ TY+++I   
Sbjct: 225 FFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSM-GLEGLEPNLLTYNMVINGL 283

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  R +    +LAEM   G     VTYNT+++GY K   F +     S M+ +G   PD
Sbjct: 284 CRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNG-LPPD 342

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T  S+I+    +GN+ +  +++++ ++ G++ +  T   L   + + G  D+   + D
Sbjct: 343 VVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWD 402

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M +  F PT+VTYN ++     +G +E+     + M+ +G+ P+ ++Y ++++ + +  
Sbjct: 403 EMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQ 462

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   +  ++    V  D   ++ +I    +   + +  +LF  M  +  +PD  T+ 
Sbjct: 463 ELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYT 522

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
           ++I  Y   G    A NL ++MI
Sbjct: 523 SLINGYCKEGDLNEALNLHDEMI 545



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 128/260 (49%), Gaps = 5/260 (1%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V++Y+ILI+        ++  +   EM       + VTYNT+I  Y K K+ +E   +F
Sbjct: 202 NVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDE---AF 258

Query: 124 SAMVESG--GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             +   G  G  P++ T N +I+     G IE+      E +  G   D  T N L   Y
Sbjct: 259 KLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGY 318

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G + +   +   M +    P VVTY  +I T  KAG++ +  E+F +M  RG++PN 
Sbjct: 319 CKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNG 378

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY SL++ +S+ G + +   I  ++  S        +N +++ +  +G +E+   L   
Sbjct: 379 VTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRG 438

Query: 302 MKERHCVPDNITFATMIQAY 321
           M+ +   PD ++++T+I  +
Sbjct: 439 MEGKGLSPDVVSYSTIIAGF 458



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 151/335 (45%), Gaps = 23/335 (6%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A   F+ M   GL+P+   YT+L++ + Q G +DEA+   ++M   S   P + TY+ L
Sbjct: 361 RAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIR-SGFPPTIVTYNAL 419

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF---SAMVE 128
           +       R +    +L  M   G+    V+Y+TII G+ +   ++E++ +F   + MVE
Sbjct: 420 LNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR---YQELDRAFQMNAEMVE 476

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G   PD  T +S+I        + +    + E     +  D  T   L   Y + G  +
Sbjct: 477 KG-VSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLN 535

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY---- 244
           +  ++ D M K+ F P  VTYN++I    K     + +    K+ +    PN ITY    
Sbjct: 536 EALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLI 595

Query: 245 --CS---------LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             CS         L+  +   GL+ + D +   +   +   +   +N II  + + G+V 
Sbjct: 596 ESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVH 655

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
           K  +L+  M +   +P  +T   +++A  + GM E
Sbjct: 656 KAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDE 690



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 150/322 (46%), Gaps = 4/322 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           MV+ G C+  + E+ S +   M   G  P    Y  LV+ Y + G   +A    ++M   
Sbjct: 278 MVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLR- 336

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +   PDV TY+ LI +  K    +   +   +M   G+  + VTY ++I+G+ +    +E
Sbjct: 337 NGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDE 396

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               +  M+ SG   P I T N++++ +  SG +E+           G+  D+ + + + 
Sbjct: 397 AYRIWDEMIRSG-FPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTII 455

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + R    D+   +   M ++   P  +TY+ +I+   +   + +  + F++M ++ + 
Sbjct: 456 AGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLL 515

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+  TY SL++ Y K G + +  ++  ++     + DT  +N +I+   +     +   L
Sbjct: 516 PDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRL 575

Query: 299 FLTMKERHCVPDNITFATMIQA 320
            L +     +P+ IT+ T+I++
Sbjct: 576 LLKLFYDESIPNGITYDTLIES 597



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 145/349 (41%), Gaps = 52/349 (14%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +++ M+  G  P++  Y AL++ +  SG ++EA   +  M+      PDV +YS 
Sbjct: 395 DEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEG-KGLSPDVVSYST 453

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    ++   D   ++ AEM   G+   A+TY+++I G  + ++  E    F  M+   
Sbjct: 454 IIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKS 513

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT------------ 178
              PD FT  S+I+ Y   G++ +    ++E    G   D  T N+L             
Sbjct: 514 -LLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREA 572

Query: 179 --------------------------------------KSYGRAGMYDKMRSVMDFMQKR 200
                                                 K +   G+ ++   V + M KR
Sbjct: 573 KRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKR 632

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P    YN++I    + G++ K  + +K+M   G  P+++T  +LV A    G+  ++
Sbjct: 633 NQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEGMDEQL 692

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           + ++R +  S  + D      ++    + G+++ +  L   M +   +P
Sbjct: 693 NLVIRDILRSCKLSDAELSKALVQINHKEGNIDAVFNLLTEMAKDGFLP 741



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 134/282 (47%), Gaps = 8/282 (2%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKIL--AEMSYL-GIECSAVTYNTIIDGYGKAKK-F 116
           C      + +++KSC+     + IEK L   +++ L G     ++YN I+D   + +K  
Sbjct: 128 CNSSSAVFDLVVKSCS---YLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPV 184

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
              E  +  M+ S G   ++F+ N +I  +  +GN+E   +++ E        ++ T N 
Sbjct: 185 IFAEKVYREMIAS-GVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNT 243

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +  +Y +    D+   ++  M      P ++TYN+VI    + G IE+      +M  +G
Sbjct: 244 VIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKG 303

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             P+ +TY +LV+ Y K G   +   +  ++  + +  D   +  +I+   +AG++ +  
Sbjct: 304 FAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAM 363

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           E F  M  R   P+ +T+ ++I  ++  G  + A  + ++MI
Sbjct: 364 EFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMI 405


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 162/338 (47%), Gaps = 4/338 (1%)

Query: 2   VMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           VM G CK+   ++A  L  +M     KP   +Y  ++ A+ + G+LD A S +N+MK   
Sbjct: 184 VMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQ-K 242

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +  PD+ TY+ LI    K  +++ +  +  EM +L I     T+N++IDG  K  K E+ 
Sbjct: 243 NIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDA 302

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E   + M+E G   P+  T N ++  Y   G + +  + ++     G++ DI +   L  
Sbjct: 303 EEIMTYMIEKG-VEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALIN 361

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y      DK   +   + +    P++VT ++++    + G  E  + +F +M+  G  P
Sbjct: 362 GYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIP 421

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N  T+C+L+  Y K GL+ +  S   ++E      +   +  +I+   + G ++K    F
Sbjct: 422 NLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATF 481

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +      PD IT+  MI  Y   G+ + A+++  KM
Sbjct: 482 EKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKM 519



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 139/314 (44%), Gaps = 7/314 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF  M++    PS   ++ L+ A           S   ++  +     D +  S 
Sbjct: 54  DDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLR-IPVDAFALST 112

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++ SC   HR DL   +LA     GI  + VT+ T+I G     K ++    F  +V   
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GV-KADIQTLNILTKSYGRAGMY 187
            C PD     +++      G+    +K ++   LM  G+ K D    NI+  ++ + GM 
Sbjct: 173 ICEPDEVMYGTVMDGLCKKGHT---QKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGML 229

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D   S+++ M+++   P ++TY  +I+  GK    EK+   F +M H  + P+  T+ S+
Sbjct: 230 DGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSV 289

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +    K G +   + I+  +    V  +   +N ++  Y   G + +   +F +M ++  
Sbjct: 290 IDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGI 349

Query: 308 VPDNITFATMIQAY 321
            PD I++  +I  Y
Sbjct: 350 EPDIISYTALINGY 363



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 135/317 (42%), Gaps = 9/317 (2%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHR---FDLIEKI 87
           +T L+        + +A      +   + C+PD   Y  ++   C K H    FDL+  +
Sbjct: 145 FTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLM 204

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
              ++    +     YN +ID + K    +   S  + M +     PDI T  S+I   G
Sbjct: 205 EQGIT----KPDTCIYNIVIDAFCKDGMLDGATSLLNEM-KQKNIPPDIITYTSLIDGLG 259

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
                EK+   + E   + +  D+ T N +     + G  +    +M +M ++   P  +
Sbjct: 260 KLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEI 319

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TYN+V++ +   G + +    F  M  +G++P+ I+Y +L++ Y +   + K   + R++
Sbjct: 320 TYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREI 379

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
             + +       + ++    + G  E     F  M+    +P+  T  T++  Y   G+ 
Sbjct: 380 SQNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLV 439

Query: 328 EAAQNLENKMIAMKENS 344
           E A +  +K+   +E++
Sbjct: 440 EEAMSHFHKLERRREDT 456



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 129/271 (47%), Gaps = 10/271 (3%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAY---GQSGLLDEAFSTINDMK 56
           V+ G CK+   E A  +   M+  G++P+   Y  ++  Y   GQ G     F ++ D  
Sbjct: 289 VIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMID-- 346

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
                +PD+ +Y+ LI    +  + D   ++  E+S  G++ S VT + ++ G  +  + 
Sbjct: 347 --KGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFEVGRT 404

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           E  +  F  M ++ G  P+++T  +++  Y  +G +E+    +++        +IQ    
Sbjct: 405 ECAKIFFDEM-QAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTA 463

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +     + G  DK  +  + +      P V+TY  +I  + + G +++ ++  +KM+  G
Sbjct: 464 VINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNG 523

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
             P++ TY  +V  + ++  + ++ + L+++
Sbjct: 524 CLPDNRTYNVIVRGFFRSSKVSEMKAFLKEI 554



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 115/267 (43%), Gaps = 37/267 (13%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +VM G C + +  +A  +F+ M+  G++P +  YTAL++ Y +   +D+A     ++ S 
Sbjct: 323 VVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREI-SQ 381

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +  KP + T S+L++   +  R +  +    EM   G   +  T+ T++ GY K    EE
Sbjct: 382 NGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEE 441

Query: 119 MESSF-------------------SAMVESG---------------GCHPDIFTLNSMIS 144
             S F                   + + ++G               G HPD+ T  +MIS
Sbjct: 442 AMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMIS 501

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
            Y   G +++ +    +    G   D +T N++ + + R+    +M++ +  +  + F  
Sbjct: 502 GYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSF 561

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKK 231
              T  ++++   +   +  M   F +
Sbjct: 562 EAATVELLMDIIAEDPSLLNMIPEFHR 588


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 2/249 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+ KQ    + L + M+ DG +P+V  Y  L+ +YG++  L++A    N+M+ V  C+
Sbjct: 389 ILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVG-CE 447

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI    K    D   ++   M   G+     TY+ II+  GKA         
Sbjct: 448 PDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKL 507

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MVE G C P++ T N MI+    + N +   K Y +    G + D  T +I+ +  G
Sbjct: 508 FCEMVEQG-CVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLG 566

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  D+  +V   M+++ + P    Y ++++ +GKAG++EK  ++++ M + G++PN  
Sbjct: 567 HCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVP 626

Query: 243 TYCSLVSAY 251
           T  SL+SA+
Sbjct: 627 TCNSLLSAF 635



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 136/280 (48%), Gaps = 1/280 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +TY+ ++    +  +F  I K+L +M   G + + VTYN +I  YG+A    +    F
Sbjct: 379 DGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVF 438

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M +  GC PD  T  ++I  +  +G ++   + Y      G+  D  T +++    G+
Sbjct: 439 NEM-QRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGK 497

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG       +   M ++   P +VTYNI+I    KA + +   + ++ M+  G +P+ +T
Sbjct: 498 AGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVT 557

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  ++      G + + +++  +++  + + D P +  ++  +G+AG+VEK  + + TM 
Sbjct: 558 YSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTML 617

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
                P+  T  +++ A+  +     A NL   M+ +  N
Sbjct: 618 NTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLN 657



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 137/291 (47%), Gaps = 8/291 (2%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDM--KSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKI 87
            YT +V   G++    + F  IN +  + V D C+P+V TY+ LI S  + +  +    +
Sbjct: 382 TYTTMVGILGRA----KQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDV 437

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             EM  +G E   VTY T+ID + KA  F +        +++ G  PD FT + +I+  G
Sbjct: 438 FNEMQRVGCEPDRVTYCTLIDIHAKAG-FLDFALEMYQRMQAAGLSPDTFTYSVIINCLG 496

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            +G++    K + E    G   ++ T NI+     +A  Y     +   MQ   F P  V
Sbjct: 497 KAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKV 556

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY+IV+E  G  G++++ E  F +MK +   P+   Y  LV  + KAG + K     + +
Sbjct: 557 TYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTM 616

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
            N+ +  + P  N ++SA+ +   +     L  +M E    P   T+  ++
Sbjct: 617 LNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTYTLLL 667



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 85/153 (55%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G   D  T   +    GRA  +  +  ++D M K    P VVTYN +I ++G+A ++   
Sbjct: 375 GFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDA 434

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
            + F +M+  G +P+ +TYC+L+  ++KAG +     + ++++ + +  DT  ++ II+ 
Sbjct: 435 VDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINC 494

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
            G+AG +    +LF  M E+ CVP+ +T+  MI
Sbjct: 495 LGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMI 527



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 128/298 (42%), Gaps = 4/298 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +++ M + GL P    Y+ +++  G++G L  A     +M     C P++ TY+I+I   
Sbjct: 472 MYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVE-QGCVPNLVTYNIMIALQ 530

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K   +    K+  +M   G +   VTY+ +++  G     +E E+ FS M       PD
Sbjct: 531 AKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWV-PD 589

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
                 ++  +G +GN+EK  +WY      G++ ++ T N L  ++ R        +++ 
Sbjct: 590 EPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQ 649

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M +    P++ TY +++    +A     M  Y + M   G  P  +   SL SA     
Sbjct: 650 SMLELGLNPSLQTYTLLLSCCTEARSPYDMGIYCELMAVTG-HPAHMFLLSLPSAGPDGQ 708

Query: 256 LIM-KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
            +       L  + + D        + ++    ++G  E+ G ++    +R+  PD +
Sbjct: 709 NVRDHASKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQRNVYPDAV 766



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/279 (20%), Positives = 125/279 (44%), Gaps = 11/279 (3%)

Query: 70  ILIKSCTKF----HRFDLIEKILAEMSY-LGIECSAVTYNTIIDGYGKAKKFEEMESS-- 122
           + + S  +F    H  + +  IL ++ +    E +    N  +D Y   +  ++++    
Sbjct: 303 VRVPSTRRFASNGHIVENVAHILRQIRWGPAAEEALANLNYSMDPYQANQVLKQLQDHTV 362

Query: 123 ----FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  +    G + D  T  +M+   G +     + K  ++    G + ++ T N L 
Sbjct: 363 ALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLI 422

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            SYGRA   +    V + MQ+    P  VTY  +I+   KAG ++   E +++M+  G+ 
Sbjct: 423 HSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLS 482

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++ TY  +++   KAG +     +  ++     + +   +N +I+   +A + +   +L
Sbjct: 483 PDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKL 542

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +  M+     PD +T++ +++     G  + A+ + ++M
Sbjct: 543 YRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEM 581



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 45/242 (18%), Positives = 98/242 (40%), Gaps = 2/242 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +  K +  + A  L+  M S G +P    Y+ ++   G  G LDEA +  ++MK   +
Sbjct: 527 IALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKR-KN 585

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD   Y +L+    K    +   +    M   G+  +  T N+++  + +  K  +  
Sbjct: 586 WVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAY 645

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +   +M+E  G +P + T   ++S    + +   M  +     + G  A +  L++ +  
Sbjct: 646 NLLQSMLEL-GLNPSLQTYTLLLSCCTEARSPYDMGIYCELMAVTGHPAHMFLLSLPSAG 704

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                + D     +D M            + V++   K+G  E+    ++    R + P+
Sbjct: 705 PDGQNVRDHASKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAAQRNVYPD 764

Query: 241 SI 242
           ++
Sbjct: 765 AV 766



 Score = 42.0 bits (97), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 53/119 (44%)

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
           H   +  ++   +  G   +  TY ++V    +A     ++ +L Q+       +   +N
Sbjct: 360 HTVALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYN 419

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +I +YG+A  +    ++F  M+   C PD +T+ T+I  +   G  + A  +  +M A
Sbjct: 420 RLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQA 478


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 169/365 (46%), Gaps = 43/365 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------ 57
           LG+  + E A  +F+  L +G   +V  ++AL+SAYG+SG  +EA    + MKS      
Sbjct: 200 LGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPN 259

Query: 58  -------VSDC----------------------KPDVYTYSILIKSCTKFHRFDLIEKIL 88
                  +  C                      +PD  T++ L+  C++   ++   ++ 
Sbjct: 260 LVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLF 319

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNSMISAY 146
           + M   GI+    TYNT++D   K     +M+ +F  M E  +    P++ T ++MI  Y
Sbjct: 320 SAMVDKGIDQDIFTYNTLLDAVCKGG---QMDLAFEIMSEMPTKNILPNVVTYSTMIDGY 376

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G ++     +NE   +GV  D  + N L   Y + G +++   V   M+       V
Sbjct: 377 AKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDV 436

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VTYN ++  +GK    +++   F++MK   + PN +TY +L+  YSK GL  +   + R+
Sbjct: 437 VTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFRE 496

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
            + + +  D   ++ +I A  + G VE    L   M +    P+ +T+ ++I A+   G 
Sbjct: 497 FKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAF---GR 553

Query: 327 TEAAQ 331
           + +AQ
Sbjct: 554 SASAQ 558


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 151/343 (44%), Gaps = 16/343 (4%)

Query: 3    MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            MLG  K   QA  +F  + +   +P    Y +++      G  ++     N+M +   C 
Sbjct: 1158 MLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCF 1217

Query: 63   PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DGYGKAKK 115
            PD  TYS LI +  K  R D   ++L EM  +G++ +   Y  +I       D +G    
Sbjct: 1218 PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSL 1277

Query: 116  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
            FEEM   +        C PD+FT   +I   G +G I++   ++ E    G + D   +N
Sbjct: 1278 FEEMRHQY--------CRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMN 1329

Query: 176  ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKH 234
             +    G+AG  D    +   M+     P+VVTYN +I+  F       ++  +F++MK 
Sbjct: 1330 NMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKE 1389

Query: 235  RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
             G+ P+S TY  L+  + K   + K   +L +++          +  +I A G+A   + 
Sbjct: 1390 SGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 1449

Query: 295  MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              ELF  +KE         +A MI+     G  + A N+ ++M
Sbjct: 1450 ACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM 1492



 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 89/323 (27%), Positives = 150/323 (46%), Gaps = 3/323 (0%)

Query: 16   LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
            LFE M     +P V  YT L+   G++G +DEA+    +M+    C+PD    + +I   
Sbjct: 1277 LFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQR-EGCRPDTVFMNNMINFL 1335

Query: 76   TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHP 134
             K  R D   K+  EM  L    S VTYNTII    ++K +  E+ S F  M ESG   P
Sbjct: 1336 GKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG-ISP 1394

Query: 135  DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
              FT + +I  +  +  +EK      E +  G          L  + G+A  YD    + 
Sbjct: 1395 SSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 1454

Query: 195  DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
              +++     +   Y ++I+  GKAG ++     F +M   G  P+   Y +L+S  ++ 
Sbjct: 1455 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLART 1514

Query: 255  GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
            G++ +  S +R+++    I D   +N I++   + G   +  E+   MK+    PD +++
Sbjct: 1515 GMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSY 1574

Query: 315  ATMIQAYNALGMTEAAQNLENKM 337
             T++ A +  GM E A  L  +M
Sbjct: 1575 NTVLGALSHAGMFEEASKLMKEM 1597



 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 78/287 (27%), Positives = 132/287 (45%), Gaps = 5/287 (1%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVSDCK 62
            LGK  + + A  LF+ M +    PSV  Y  ++ A  +S     E  S    MK  S   
Sbjct: 1335 LGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKE-SGIS 1393

Query: 63   PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++     
Sbjct: 1394 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 1453

Query: 123  FSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  + E+ G     ++ +  MI   G +G ++     ++E N +G   D+   N L    
Sbjct: 1454 FQELKENCGSSSARVYAV--MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 1511

Query: 182  GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
             R GM D+  S M  MQ+    P + +YNI++    K G   +  E    MK   ++P+ 
Sbjct: 1512 ARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDV 1571

Query: 242  ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++Y +++ A S AG+  +   +++++       D   ++ I+ A G+
Sbjct: 1572 VSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 1618



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 5    GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 61
            G CK  + E+A +L E M   G  P    Y +L+ A G++   D A     ++K   +C 
Sbjct: 1405 GFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE--NCG 1462

Query: 62   KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
                  Y+++IK   K  R D    +  EM+ LG       YN ++ G  +    +E  S
Sbjct: 1463 SSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALS 1522

Query: 122  SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +   M E G C PDI + N +++    +G   +  +  +      V+ D+ + N +  + 
Sbjct: 1523 TMRRMQEHG-CIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGAL 1581

Query: 182  GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              AGM+++   +M  M    F   ++TY+ ++E  GK  H
Sbjct: 1582 SHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDH 1621



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 1/241 (0%)

Query: 102  TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
            TY  +I      +++ EM      MV +  C      L+ ++   GN+  + +    + +
Sbjct: 1115 TYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQ 1174

Query: 162  FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAG 220
                  +   Q  N +       G Y+K+  + + M      FP  VTY+ +I  F K G
Sbjct: 1175 IKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLG 1234

Query: 221  HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
              +   +   +MK  GM+P +  Y  L++ + K        S+  ++ +     D   + 
Sbjct: 1235 RRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYT 1294

Query: 281  CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             +I   G+AG +++    F  M+   C PD +    MI      G  + A  L  +M  +
Sbjct: 1295 ELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETL 1354

Query: 341  K 341
            +
Sbjct: 1355 R 1355


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 160/333 (48%), Gaps = 3/333 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  + ++A  +FE M     +PSV  Y A+++   +    D+A      M+      PD
Sbjct: 87  GRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRD-KGIVPD 145

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VYT++I +KS  +  R     ++L  M   G E SAV Y T+I G+ +     E    F 
Sbjct: 146 VYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFE 205

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+  G C PDI   N +I      G++++ E+  N+    GV  ++ T+NI  + + + 
Sbjct: 206 EMLGLGIC-PDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQR 264

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
            M ++   ++D +  R   P V+TYN +I    K   + + E Y +KM + G +P+  TY
Sbjct: 265 AMLNEAIRLLDGV-GRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTY 323

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            S++  Y K G++   D ILR       + D   +  +I+   Q GD+++   +F    E
Sbjct: 324 NSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAME 383

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +   P+ +   T+++  +  G+   A  L N+M
Sbjct: 384 KGLKPNLVLCNTLVKGLSQQGLILQALKLMNEM 416



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 144/320 (45%), Gaps = 46/320 (14%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F   +  GLKP++ +   LV    Q GL+ +A   +N+M S + C PD++TY++
Sbjct: 372 DRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEM-SENGCSPDIWTYNL 430

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    K                  I C +   N +ID   K                  
Sbjct: 431 VINGLCK------------------IGCVSDADNLVIDAIAK------------------ 454

Query: 131 GCHPDIFTLNSMISAYGN----SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           G  PD+FT N++I  Y         IE +++ +N     GV  D+ T N +     +AG 
Sbjct: 455 GHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNH----GVSPDVITYNSILNGLCKAGK 510

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y+ +      M ++   P ++TYNI+ E+F KA  +E+     ++M+++G+ P+ + + +
Sbjct: 511 YEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGT 570

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDT-PFFNCIISAYGQAGDVEKMGELFLTMKER 305
           L+  +   G +     + ++V+       T   +N +I+A+    ++    +LF  M E 
Sbjct: 571 LMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCEN 630

Query: 306 HCVPDNITFATMIQAYNALG 325
              PD+ T+  MI  +   G
Sbjct: 631 GFSPDSYTYRVMIDGFCKTG 650



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 149/339 (43%), Gaps = 5/339 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  +  +A      M+++G +P    Y +++  Y + G++  A   + D  +  
Sbjct: 291 LICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRD-GAFK 349

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD  TY  LI    +    D    +  E    G++ + V  NT++ G  +     + 
Sbjct: 350 GFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQA 409

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
               + M E+G C PDI+T N +I+     G +   +    +    G   D+ T N L  
Sbjct: 410 LKLMNEMSENG-CSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLID 468

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y +    D    ++D M      P V+TYN ++    KAG  E +   FK M  +G  P
Sbjct: 469 GYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVP 528

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N ITY  L  ++ KA  + +  +++ +++N  +  D   F  ++  +   GD++   +LF
Sbjct: 529 NIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLF 588

Query: 300 LTMKERHCVPDNI-TFATMIQAYNALGMTEAAQNLENKM 337
             + E++     I T+  MI A+        A+ L NKM
Sbjct: 589 KRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKM 627



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 131/316 (41%), Gaps = 3/316 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  +P  A  L   M S G + S   Y  ++  + +     EA     +M  +  C PD+
Sbjct: 158 RTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGIC-PDI 216

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             ++ LI +  +       E++L ++   G+  +  T N  I G+ +     E       
Sbjct: 217 MAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDG 276

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           +    G  PD+ T N++I     +  + + E +  +    G + D  T N +   Y + G
Sbjct: 277 V--GRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLG 334

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           M      ++     + F P   TY  +I    + G I++    F +   +G+KPN +   
Sbjct: 335 MMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCN 394

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +LV   S+ GLI++   ++ ++  +    D   +N +I+   + G V     L +    +
Sbjct: 395 TLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAK 454

Query: 306 HCVPDNITFATMIQAY 321
             +PD  TF T+I  Y
Sbjct: 455 GHLPDVFTFNTLIDGY 470



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 127/300 (42%), Gaps = 10/300 (3%)

Query: 21  LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80
           +S  L P    + A V  Y ++ L  +A    N +K     K  + TY  +I+       
Sbjct: 1   MSPALLPK---HVAAVVKYQKNPL--KALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGE 55

Query: 81  FDLIEKILAEMSYLGIECSAV--TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
           F+ +E++LAE + + I+   +   Y   +  YG+  K +E    F  M +   C P + +
Sbjct: 56  FEAMEEVLAE-TRMNIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERM-DFFNCEPSVQS 113

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
            N++++        ++  K Y      G+  D+ T  I  KS+ R       R +++ M 
Sbjct: 114 YNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMP 173

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
            +    + V Y  VI  F +  H  +  E F++M   G+ P+ + +  L+    + G + 
Sbjct: 174 SQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQ 233

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           + + +L +V    V  +    N  I  + Q   + +   L L    R   PD IT+ T+I
Sbjct: 234 ESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRL-LDGVGRGLTPDVITYNTLI 292



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 7/220 (3%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI-LTKSY 181
           F+++ +  G    + T   MI   G  G  E ME+   E  +      ++ + I   ++Y
Sbjct: 27  FNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGVYIGAMRNY 86

Query: 182 GRAGMYDKMRSVMDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           GR G   K++  +D  ++  FF   P+V +YN ++    +  + ++  + + +M+ +G+ 
Sbjct: 87  GRKG---KIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIV 143

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+  T+   + ++ +         +L  + +         +  +I  + +     +  EL
Sbjct: 144 PDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHEL 203

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  M      PD + F  +I      G  + ++ L NK++
Sbjct: 204 FEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVL 243



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K ++ E+A  L E M + GL P V  +  L+  +  +G LD A+     +         +
Sbjct: 542 KARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTI 601

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+I+I +       ++ EK+  +M   G    + TY  +IDG+ K        S    
Sbjct: 602 ATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLV 661

Query: 126 MVESG 130
            +E G
Sbjct: 662 KIEKG 666


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 168/341 (49%), Gaps = 4/341 (1%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           M++ G C+    ++A+ + E+M  + L P+V  Y  LV+ +   G +DEAF   ++M+ +
Sbjct: 288 MLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKM 347

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            +  PDV TY+ LI  C+++     +  ++ EM   G++C+AVTYN I+    K     E
Sbjct: 348 -NVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTE 406

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             ++   M E  G  PD  T N++I AY  +G + K  +  +E    G+K D  TLN + 
Sbjct: 407 ATTTLDKM-EENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTIL 465

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                    D+  +++    KR +    V+Y I+I  + K    ++    + +MK R + 
Sbjct: 466 HCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIM 525

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++ITY S++    ++  + +    L ++  + ++ D   +N II  +   G+VEK  + 
Sbjct: 526 PSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQF 585

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              M E    PD  T   +++     GM E A  L N +++
Sbjct: 586 HNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVS 626



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 154/335 (45%), Gaps = 7/335 (2%)

Query: 8   KQPEQASLLF-EVMLSDGLK----PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + P  +S+L    +L D +K    P+ + +  L+  Y     + +A   +N M     C 
Sbjct: 187 RYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFG-CV 245

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  +Y+ ++ +  K         +L +M   G+  +  TYN ++ GY +    +E    
Sbjct: 246 PDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKV 305

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M  +    P ++T N +++ + N G I++  +  +E   M V  D+ T N L     
Sbjct: 306 IEIMTRNN-LLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCS 364

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +     ++ S+++ M K+      VTYNI+++   K G++ +      KM+  G+ P+ +
Sbjct: 365 QWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCV 424

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+ AY KAG + K   ++ ++ +  + +DT   N I+        +++   L  + 
Sbjct: 425 TYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSA 484

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +R  + D +++  +I  Y      + A NL ++M
Sbjct: 485 SKRGYILDEVSYGILILGYFKDEKGDRALNLWDEM 519



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 133/299 (44%), Gaps = 37/299 (12%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT---- 67
           +A+   + M  +GL P    Y  L+ AY ++G + +AF  +++M S    K D +T    
Sbjct: 406 EATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTS-KGLKIDTWTLNTI 464

Query: 68  -------------------------------YSILIKSCTKFHRFDLIEKILAEMSYLGI 96
                                          Y ILI    K  + D    +  EM    I
Sbjct: 465 LHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQI 524

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
             S +TYN++I G  +++K ++     + M+E+G   PD  T N +I  +   GN+EK  
Sbjct: 525 MPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLV-PDETTYNIIIHGFCLEGNVEKAF 583

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           +++NE      K D+ T NIL +   R GM +K   + + +  +     VVTYN +I + 
Sbjct: 584 QFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSL 643

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
            K G  E   +   +M+ + + P+  TY  +++A + AG I + +    ++  S ++ D
Sbjct: 644 CKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHD 702



 Score = 45.1 bits (105), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 37/210 (17%), Positives = 90/210 (42%), Gaps = 3/210 (1%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM--- 190
           P    L++ I AY          + +N+   +  + ++ T N L  S  R      +   
Sbjct: 138 PSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLA 197

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R V+    K    P   ++NI+I  +     ++   ++  KM   G  P++++Y +++ A
Sbjct: 198 RQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDA 257

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K  L+ +   +L  +++  +  +   +N ++  Y + G +++  ++   M   + +P 
Sbjct: 258 LLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPT 317

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAM 340
             T+  ++  +   G  + A  + ++M  M
Sbjct: 318 VWTYNMLVNGFCNDGKIDEAFRIRDEMEKM 347


>gi|255661186|gb|ACU25762.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 426

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 155/341 (45%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 57
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 58  --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTM 123

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M++RG++PNSITY +++S + KAG + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     PDNI   T I      G  E A
Sbjct: 303 GLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 339



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 156/343 (45%), Gaps = 39/343 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +Y+ L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVMPNTASYTTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---TLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM  K  +Q   T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GKAG +++    F+K++  G++ + + Y +++ AY 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 253 KAGLIMKVDSILRQVENSDVI-------------------------------LDTPFFNC 281
           KAGL+     +L ++++ D I                                D   F  
Sbjct: 301 KAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVRDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           +I  + +      + E+F  M+     PD+   A ++ AY  L
Sbjct: 361 MIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKL 403



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  +   L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  +++ +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +   G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKAGKLDRAAMLFQKL 280



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  +  +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYTTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171



 Score = 41.2 bits (95), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  + ++A++LF+ + S G++    +Y  ++ AY ++GL+  A   ++++KS     
Sbjct: 263 IWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYEKAGLVAHAKRLLHELKS----- 317

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD       I       R +    +  +    G       +  +I  + K KK+  +   
Sbjct: 318 PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVRDITVFERMIHLFSKYKKYANVVEV 377

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           F  M    G  PD   +  +++AYG     +K    Y E   +G
Sbjct: 378 FDKM-RGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVG 420


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 181/380 (47%), Gaps = 50/380 (13%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + E++  L + ++S GL+P   +YT +V++  +S  L EA   + +M   +
Sbjct: 88  LLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIR-A 146

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C P + T++ LI  C +    ++ + +L +M+  G++   VTYNT++DG  KA + +E 
Sbjct: 147 GCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEA 206

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-------EKMEKWYNEFNLM------- 165
           E     M ++ GC PD+   +S +     SG +       E+M   +++ N++       
Sbjct: 207 EQLLERM-KASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILD 265

Query: 166 ----------------------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                                 G   ++   + +     + G   + RSVM+ M +    
Sbjct: 266 GLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCR 325

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVTY+ ++    KAG IE+  E  ++M   G KPN++TYCSLV      G + + + +
Sbjct: 326 PDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERM 385

Query: 264 LRQVENSDVIL-----DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           + ++ +              +N +I    +AG ++   + F  M+ + C PD ++++T++
Sbjct: 386 VEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIV 445

Query: 319 QAYNALGMTEAAQNLENKMI 338
           +     G+  + + L+ +MI
Sbjct: 446 E-----GLARSGRALQAEMI 460



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 137/275 (49%), Gaps = 10/275 (3%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G CK  + ++A  L E M + G  P V  Y++ V    +SG + +A   +  M+  S
Sbjct: 193 LMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRD-S 251

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEE 118
              P+V TY+ ++    K  + D   +++ +M S  G   + V Y+T++DG  K  + +E
Sbjct: 252 HHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQE 311

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             S   AM  +G C PD+ T +S+++    +G IE+  +   E  + G K +  T   L 
Sbjct: 312 ARSVMEAMARAG-CRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLV 370

Query: 179 K---SYGRAGMYDKMRSVMDFMQKRFFF--PTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
               S GR    ++M   M           P+V TYN +I    KAG I+   ++F++M+
Sbjct: 371 HGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMR 430

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
            +G  P+ ++Y ++V   +++G  ++ + IL +V 
Sbjct: 431 SQGCDPDGVSYSTIVEGLARSGRALQAEMILSEVR 465



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 143/324 (44%), Gaps = 3/324 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYT 67
           +P     L E M +  ++P+V  Y  L+    +     EA   + DM S      PD+ T
Sbjct: 25  RPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVT 84

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           YS L+    K  + +   ++L E+   G+   A+ Y  ++    K+ +  E       M+
Sbjct: 85  YSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMI 144

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            +G C P + T N++IS      N+E  +    +    GVKAD+ T N L     +AG  
Sbjct: 145 RAG-CCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRL 203

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            +   +++ M+     P VV Y+  +    K+G +    +  ++M+     PN +TY ++
Sbjct: 204 QEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTI 263

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           +    K+G I     ++ Q+ +SD   L+   ++ ++    + G  ++   +   M    
Sbjct: 264 LDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAG 323

Query: 307 CVPDNITFATMIQAYNALGMTEAA 330
           C PD +T+++++      G  E A
Sbjct: 324 CRPDVVTYSSLVNGLCKAGKIEEA 347



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 154/337 (45%), Gaps = 5/337 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDV--YTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           L K ++  +A  L   M+S G + + D+  Y+ L+S Y ++G ++E+   + ++ S    
Sbjct: 55  LCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVIS-RGL 113

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +PD   Y+ ++ S  K  R     ++L EM   G   + +T+NT+I G  + K  E  +S
Sbjct: 114 RPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADS 173

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               M  SG    D+ T N+++     +G +++ E+        G   D+   +      
Sbjct: 174 LLQKMAASG-VKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGL 232

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPN 240
            ++G       V++ M+     P VVTYN +++   K+G I+   E  ++M    G   N
Sbjct: 233 CKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLN 292

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            + Y ++V    K G   +  S++  +  +    D   ++ +++   +AG +E+  E   
Sbjct: 293 VVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVR 352

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M    C P+ +T+ +++    + G    A+ +  +M
Sbjct: 353 EMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 137/280 (48%), Gaps = 1/280 (0%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           + C P+  T++ L+   +K  R    E++L  M+   I+ + V+YN +++G  K +++ E
Sbjct: 4   TGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHE 63

Query: 119 MESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
            E     M+  GG   PD+ T ++++S Y  +G +E+  +   E    G++ D      +
Sbjct: 64  AEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKV 123

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             S  ++    +   +++ M +    PT++T+N +I    +  ++E  +   +KM   G+
Sbjct: 124 VASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGV 183

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           K + +TY +L+    KAG + + + +L +++ S    D   ++  +    ++G V    +
Sbjct: 184 KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQ 243

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +   M++ H  P+ +T+ T++      G  + A  +  +M
Sbjct: 244 VLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQM 283



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 2/110 (1%)

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M   G  PNS+T+ +LV+ +SK G     + +L  +   D+  +   +N ++    +   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 292 VEKMGELFLTMKER--HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             +  EL   M  R     PD +T++T++  Y   G  E ++ L  ++I+
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVIS 110


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 157/333 (47%), Gaps = 8/333 (2%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P++A  +F  ++ +G KPS+  YT LV+A  +        S I+ ++  +  KPD   +
Sbjct: 334 RPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEK-NGLKPDTILF 392

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I + ++    D   KI  +M   G + +A T+NT+I GYGK  K EE       M+ 
Sbjct: 393 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLR 452

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                P+  T N ++ A+ N   IE+      +    GVK D+ T N L K+Y R G   
Sbjct: 453 DEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIG--- 509

Query: 189 KMRSVMDFMQKRFFF----PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              +  D +  R       P V T   ++  + + G +E+   +F +MK  G+ PN   +
Sbjct: 510 STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVF 569

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+  +     +  V  ++  +E   V  D   F+ +++A+   GD+++  E++  M E
Sbjct: 570 NSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLE 629

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               PD   F+ + + Y   G  E A+ + N+M
Sbjct: 630 GGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 662



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 163/330 (49%), Gaps = 9/330 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           GK  + E++S L ++ML D  L+P+      LV A+     ++EA++ +  M+S    KP
Sbjct: 435 GKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYG-VKP 493

Query: 64  DVYTYSILIKSCTKFHRFDLIEK-ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           DV T++ L K+  +       E  I+  M +  ++ +  T  TI++GY +  K EE    
Sbjct: 494 DVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRF 553

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M E  G HP++F  NS+I  + N  +++ + +  +     GVK D+ T + L  ++ 
Sbjct: 554 FYRMKEL-GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWS 612

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G   +   +   M +    P +  ++I+ + + +AG  EK E+   +M+  G++PN +
Sbjct: 613 SVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVV 672

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGELF 299
            Y  ++S +  AG + K   + +++    ++  +P    +  +I  +G+A    K  EL 
Sbjct: 673 IYTQIISGWCSAGEMKKAMQVYKKM--CGIVGLSPNLTTYETLIWGFGEAKQPWKAEELL 730

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEA 329
             M+ ++ VP   T   +   + ++G++ +
Sbjct: 731 KDMEGKNVVPTRKTMQLIADGWKSIGVSNS 760



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 157/344 (45%), Gaps = 15/344 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA  +FE M   G KP+   +  L+  YG+ G L+E+   ++ M      +P+  T +I
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 465

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++     + +    I+ +M   G++   VT+NT+   Y +       E      +   
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHN 525

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T  ++++ Y   G +E+  +++     +GV  ++   N L K +      D +
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 585

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V+D M++    P VVT++ ++  +   G +++ EE +  M   G+ P+   +  L   
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--- 307
           Y++AG   K + IL Q+    V  +   +  IIS +  AG+++K  +++  M    C   
Sbjct: 646 YARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM----CGIV 701

Query: 308 --VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
              P+  T+ T+I  +        A+ L      +K+  GK ++
Sbjct: 702 GLSPNLTTYETLIWGFGEAKQPWKAEEL------LKDMEGKNVV 739



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 66/119 (55%)

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G  ++    F  +   G KP+ ITY +LV+A ++      + S++ +VE + +  DT  F
Sbjct: 333 GRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILF 392

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           N II+A  ++G++++  ++F  MKE  C P   TF T+I+ Y  +G  E +  L + M+
Sbjct: 393 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMML 451



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 101/214 (47%), Gaps = 2/214 (0%)

Query: 122 SFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           SF  ++ SGG    D+ +   +++     G  ++    +N     G K  + T   L  +
Sbjct: 304 SFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTA 363

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             R   +  + S++  ++K    P  + +N +I    ++G++++  + F+KMK  G KP 
Sbjct: 364 LTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPT 423

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF 299
           + T+ +L+  Y K G + +   +L  +   +++  +    N ++ A+     +E+   + 
Sbjct: 424 ASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIV 483

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             M+     PD +TF T+ +AY  +G T  A+++
Sbjct: 484 YKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDM 517


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 167/365 (45%), Gaps = 37/365 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++   LF+ ML  G+ P+V VY+ L++ + + GL  EA + ++ M      +PDVYTY+ 
Sbjct: 97  DRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTE-RGIQPDVYTYTC 155

Query: 71  LIKSCTKFHR-------FDLIE----------------------------KILAEMSYLG 95
           +I    K  R       FDL+                             KI   M   G
Sbjct: 156 MIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKG 215

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEK 154
                V+YNT+I G     K +E    FS+++E G    PD+ T N++I      G ++K
Sbjct: 216 KRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDK 275

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             + Y+     G   ++ T +IL   Y ++G+ DK   +   + K    P+  TY+++I+
Sbjct: 276 AVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMID 335

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            F K   +   +  F +MK  G+ P    Y +L+++  K   + +   + ++++ S+   
Sbjct: 336 GFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEP 395

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           DT  FN +I    +AGD+    EL   M++    PD  T+++ I   + LG  E A+   
Sbjct: 396 DTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAF 455

Query: 335 NKMIA 339
           + MIA
Sbjct: 456 DSMIA 460



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 143/314 (45%), Gaps = 6/314 (1%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P +  Y  +++   +   L++A   + +M+  S C+P+ +TY IL+    K  R +   +
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEG-SSCEPNSFTYCILMDGLCKEGRVEEAMR 66

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +L EM   G+E   V Y+T+I G+      +  ++ F  M+E  G  P++   + +I+ +
Sbjct: 67  LLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEK-GISPNVVVYSCLINGF 125

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G   +     +     G++ D+ T   +     + G   K   + D M ++   P+ 
Sbjct: 126 CKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPST 185

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI---MKVDSI 263
           VTYN++I    K G I    + F+ M  +G +   ++Y +L+      G +   MK+ S 
Sbjct: 186 VTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSS 245

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L +  N  V  D   FN +I    + G ++K  E++ TM ER    +  T   +I  Y  
Sbjct: 246 LLEDGNY-VEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIK 304

Query: 324 LGMTEAAQNLENKM 337
            G+ + A  L  ++
Sbjct: 305 SGIIDKAMELWKRV 318



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 128/278 (46%), Gaps = 3/278 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+ +Y+ +I    K  R +    +L EM     E ++ TY  ++DG  K  + EE    
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M +  G   D+   +++IS + + G +++ +  ++E    G+  ++   + L   + 
Sbjct: 68  LGEM-KRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFC 126

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G++ +  +V+  M +R   P V TY  +I    K G   K  + F  M  +G +P+++
Sbjct: 127 KKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTV 186

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L++   K G I     I   +      L+   +N +I      G +++  +LF ++
Sbjct: 187 TYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSL 246

Query: 303 KE--RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            E   +  PD ITF T+IQ     G  + A  + + MI
Sbjct: 247 LEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMI 284



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 135/287 (47%), Gaps = 6/287 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           +++G C   + ++A  LF  +L DG  ++P V  +  ++    + G LD+A    + M  
Sbjct: 226 LIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIE 285

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
                 +++T  ILI    K    D   ++   +  LG+  S+ TY+ +IDG+ K     
Sbjct: 286 RGSFG-NLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLN 344

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
             +  FS M  SG   P +F  N+++++     ++E+  + + E      + D  + NI+
Sbjct: 345 FAKGLFSRMKISG-LSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIM 403

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                +AG     + +++ MQ+    P   TY+  I    K G +E+ +  F  M   G+
Sbjct: 404 IDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGI 463

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
            P++  Y SL+  +     I +V ++LRQ+ +  VILD    N I++
Sbjct: 464 TPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILT 510



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 145/345 (42%), Gaps = 41/345 (11%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  +A  LF++M   G +PS   Y  L++   + G + +AF     M      +
Sbjct: 159 GLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGK-R 217

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG--IECSAVTYNTIIDGYGKAKKFEEME 120
            +V +Y+ LI       + D   K+ + +   G  +E   +T+NT+I G  K  + ++  
Sbjct: 218 LEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAV 277

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKW--------------------- 158
             +  M+E G    ++FT + +I  Y  SG I+K ME W                     
Sbjct: 278 EIYDTMIERGS-FGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDG 336

Query: 159 -------------YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
                        ++   + G+   +   N L  S  +    ++ R +   M++    P 
Sbjct: 337 FCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPD 396

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
            +++NI+I+   KAG I   +E    M+  G+ P++ TY S ++  SK G + +      
Sbjct: 397 TISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFD 456

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            +  S +  D   ++ +I  +G   ++E++  L   M +   + D
Sbjct: 457 SMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILD 501



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 149/343 (43%), Gaps = 18/343 (5%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E+A  L   M     +P+   Y  L+    + G ++EA   + +MK     +
Sbjct: 19  GLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLGEMKR-KGLE 77

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            DV  YS LI         D  + +  EM   GI  + V Y+ +I+G+ K   + E  + 
Sbjct: 78  VDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAV 137

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E  G  PD++T   MI      G   K    ++     G +    T N+L     
Sbjct: 138 LHTMTER-GIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLC 196

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG--MKPN 240
           + G       + + M ++     VV+YN +I      G +++  + F  +   G  ++P+
Sbjct: 197 KEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPD 256

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP----FFNC--IISAYGQAGDVEK 294
            IT+ +++    K G   ++D   + VE  D +++       F C  +I  Y ++G ++K
Sbjct: 257 VITFNTVIQGLCKEG---RLD---KAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDK 310

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             EL+  + +   VP + T++ MI  +  + M   A+ L ++M
Sbjct: 311 AMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRM 353



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 1/243 (0%)

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M  + I    V+YNTII+G  K K+ E+       M E   C P+ FT   ++      G
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEM-EGSSCEPNSFTYCILMDGLCKEG 59

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            +E+  +   E    G++ D+   + L   +   G  D+ +++ D M ++   P VV Y+
Sbjct: 60  RVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYS 119

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I  F K G   +       M  RG++P+  TY  ++    K G   K   +   +   
Sbjct: 120 CLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEK 179

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
                T  +N +I+   + G +    ++F TM E+    + +++ T+I      G  + A
Sbjct: 180 GEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEA 239

Query: 331 QNL 333
             L
Sbjct: 240 MKL 242


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 154/319 (48%), Gaps = 2/319 (0%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C Q E     F  ML++GLKP++  Y AL+ AY   G+  EAFS  N++K  +   PDV 
Sbjct: 352 CGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKK-NGFHPDVV 410

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +Y+ L+ +  K  + +   K+   M     + + V+YN +ID YG      E       M
Sbjct: 411 SYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEM 470

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E  G  P+I ++ ++++A G  G   K++   +   L G+K +    N    SY   G 
Sbjct: 471 -ERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGE 529

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           YDK  S+   M+ +   P  VTYN++I    K     +   +  +M    +  +   Y S
Sbjct: 530 YDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSS 589

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++ AYSK G + + +S+  +++      D   +  +I AY  A + EK   LFL M+   
Sbjct: 590 VICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDD 649

Query: 307 CVPDNITFATMIQAYNALG 325
             PD+I  +++++A+N  G
Sbjct: 650 VQPDSIACSSLMRAFNKGG 668



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 151/301 (50%), Gaps = 4/301 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+ P +  +  ++SAY +     +  S    MK  ++ +PD  T +I+I    K  
Sbjct: 258 MTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKG-TNIRPDTTTLNIVIYCLVKLG 316

Query: 80  RFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           +      I   M     EC    VT+ TII  Y    + E  +++F+ M+ + G  P+I 
Sbjct: 317 QNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTML-AEGLKPNIV 375

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           + N++I AY + G  ++    +NE    G   D+ +   L  +YG++G  +K   V + M
Sbjct: 376 SYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELM 435

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++    P +V+YN +I+ +G  G + +  E   +M+  G++PN ++ C+L++A  + G  
Sbjct: 436 RRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQK 495

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           +K+ S+L   E   + L+T  +N  I +Y   G+ +K   L+  M+ +   PD +T+  +
Sbjct: 496 VKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVL 555

Query: 318 I 318
           I
Sbjct: 556 I 556



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 152/341 (44%), Gaps = 39/341 (11%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           +  L+    Q G L+ +      MK+  +       Y+++I+   + +  D    +  EM
Sbjct: 129 FPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEM 188

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
                +  A TYN +I+ +G+A ++    +    M+ +    P   T N++I+A G+SGN
Sbjct: 189 QKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAA-IPPSRSTYNNLINACGSSGN 247

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-------------- 197
            ++      +    GV  D+ T NI+  +Y R   Y K+ S  + M              
Sbjct: 248 WKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNI 307

Query: 198 -----------------------QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
                                  ++   +P VVT+  +I  +   G IE  +  F  M  
Sbjct: 308 VIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLA 367

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+KPN ++Y +L+ AY+  G+  +  S+  +++ +    D   +  +++AYG++G  EK
Sbjct: 368 EGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEK 427

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
             ++F  M+  HC P+ +++  +I AY + G +TEA + L 
Sbjct: 428 AMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILH 468



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 149/321 (46%), Gaps = 39/321 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  +PE+A  +FE+M  +  KP++  Y AL+ AYG  GLL EA   +++M+  +  +P+
Sbjct: 420 GKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMER-NGVQPN 478

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + +   L+ +C +  +   I+ +L+     GI+ +   YN+ I  Y    ++++  S + 
Sbjct: 479 IVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYR 538

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           AM  +    PD  T N +IS         KM K                       YG A
Sbjct: 539 AM-RTKKVKPDPVTYNVLISGCC------KMSK-----------------------YGEA 568

Query: 185 -GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+M  +   + K         Y+ VI  + K G + + E  F KMK  G +P+ IT
Sbjct: 569 LGFLDEMMDLKIPLSKE-------VYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVIT 621

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +++ AY  A    K  ++  ++E  DV  D+   + ++ A+ + G   K+  L   M+
Sbjct: 622 YTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMR 681

Query: 304 ERHCVPDNITFATMIQAYNAL 324
           E+    +N +F  M+ A + L
Sbjct: 682 EKKIPFNNSSFFEMVSACSLL 702



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 146/343 (42%), Gaps = 43/343 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C Q  +   +       G+K +   Y + + +Y   G  D+A S    M++    KPD
Sbjct: 490 GRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRT-KKVKPD 548

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY++LI  C K  ++      L EM  L I  S   Y+++I  Y K  +  E ES F+
Sbjct: 549 PVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFT 608

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +  GC PD+ T  +MI AY  + N EK    + E     V+ D    + L +++ + 
Sbjct: 609 KM-KMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKG 667

Query: 185 GMYDKMRSVMDFMQKR-------FFF-----------------------PTVVTYNI--- 211
           G   K+  + +FM+++        FF                       P++   +I   
Sbjct: 668 GQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLL 727

Query: 212 --VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
             ++   GK+G IE M + F K+   G + N  TY  L+     AG   K   +L+ +E 
Sbjct: 728 NQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEE 787

Query: 270 SDVILDTPFFNCIIS-AYGQAGDVEKMGELFLTMKERHCVPDN 311
           + +      +  I S A  ++G      E    ++ER  +PDN
Sbjct: 788 AGLQPSVGMYRSISSFAQNRSG-----AEYAAVIQERIGMPDN 825



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+  N MI  +     +++    + E      K D +T N L  ++GRAG +    ++M
Sbjct: 163 DIY--NMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIM 220

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M +    P+  TYN +I   G +G+ ++     KKM   G+ P+ +T+  ++SAY + 
Sbjct: 221 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRG 280

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 312
               KV S    ++ +++  DT   N +I    + G   K  ++F +MKE+   C PD +
Sbjct: 281 NQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVV 340

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           TF T+I  Y+  G  E  Q   N M+A
Sbjct: 341 TFTTIIHLYSVCGQIENCQTAFNTMLA 367


>gi|410110069|gb|AFV61114.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           lycioides]
          Length = 429

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 156/345 (45%), Gaps = 39/345 (11%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---------------------- 57
           M    L P    Y+ L++ +G+ GL D A S +  M+                       
Sbjct: 2   MRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD 61

Query: 58  ------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
                        S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T
Sbjct: 62  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYST 121

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           ++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     M
Sbjct: 122 LLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 180

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK 
Sbjct: 181 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 240

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
               ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I A
Sbjct: 241 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 300

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           Y +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 301 YERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 341



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 160/344 (46%), Gaps = 41/344 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 68  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVMPNTASYSTLLTMY 126

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 127 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 185

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---TLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM  K  +Q   T N +   YG+   ++K  +
Sbjct: 186 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANN 242

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + + Y +++ AY 
Sbjct: 243 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 302

Query: 253 KAGLIMKVDSILRQVENSDVI-LDTPF---------------FNCIISAYGQAGDV---E 293
           +AGL+     +L ++++ D I  DT                 F   I A G+  D+   E
Sbjct: 303 RAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDA-GEVKDITVFE 361

Query: 294 KMGELFLTMKERHCV-------------PDNITFATMIQAYNAL 324
           +M  LF   K+   V             PD+   A ++ AY  L
Sbjct: 362 RMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKL 405



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 131/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 9   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 68

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 69  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 127

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 128 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 187

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  +++ +   +N ++  YG+  + EK   L   M
Sbjct: 188 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 247

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 248 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 282



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 81/173 (46%)

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E     +  D  T + L   +G+ G++D   S +  M++      +V Y+ +IE   K  
Sbjct: 1   EMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLC 60

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
              K    F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  ++
Sbjct: 61  DYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYS 120

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            +++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 173



 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  + ++A++LF+ + S G++    +Y  ++ AY ++GL+  A   ++++KS     
Sbjct: 265 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKS----- 319

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD       I       R +    +  +    G       +  +I  + K KK+  +   
Sbjct: 320 PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANVVEV 379

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           F  M    G  PD   +  +++AYG     +K    Y E   +G
Sbjct: 380 FDKM-RGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVG 422


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 155/347 (44%), Gaps = 6/347 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +L K  Q  +A  LF+  L     P    +  L+    + G +D AF    DM+S   
Sbjct: 150 LSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFG- 208

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEE 118
           C PDV TY+ LI    K +      ++  E+     +CS   VTY +II G+ K+ K +E
Sbjct: 209 CLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRS-DCSPDIVTYTSIISGFCKSGKMKE 267

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             + F  M+ SG   P++ T N +I  +G  GNI + E  Y +       AD+ T   L 
Sbjct: 268 ASNLFEEMMRSG-IQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLI 326

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             Y RAG  +      + M+ R   PTV TY ++I    K   + +  ++  ++K+  + 
Sbjct: 327 DGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSII 386

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P    Y  ++  + KAG + + + IL+++E      D   F  +I  +   G + +   +
Sbjct: 387 PKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINI 446

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           F  M    C PDNIT  ++I      GM   A  +  KM     N G
Sbjct: 447 FNRMLATRCAPDNITVNSLISCLLKAGMPNEAYRIR-KMALEDRNLG 492



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 151/349 (43%), Gaps = 70/349 (20%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE---- 118
           PD      L+    +   FD+++K+LAE+    +  ++  YN ++    K  +  E    
Sbjct: 106 PDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYL 165

Query: 119 ------MES-----SFSAMV-------------------ESGGCHPDIFTLNSMISAYGN 148
                 M+S     +F+ ++                   ES GC PD+ T N++I+    
Sbjct: 166 FKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCK 225

Query: 149 SGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
           +  +++  + + E         DI T   +   + ++G   +  ++ + M +    P V+
Sbjct: 226 ANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVI 285

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL---------IM 258
           T+N++I+ FGK G+I + E  ++KM +     + +T+ SL+  Y +AG          +M
Sbjct: 286 TFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVM 345

Query: 259 KVDSI--------------------------LRQVENSDVILDTPFFNCIISAYGQAGDV 292
           K  ++                          L Q++NS +I     +N +I  + +AG+V
Sbjct: 346 KTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNV 405

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           ++   +   M+E+ C PD +TF  +I  +   G    A N+ N+M+A +
Sbjct: 406 DEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATR 454



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 121/272 (44%), Gaps = 2/272 (0%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY++L++S  +    DL+  +   M   G    +     ++    +A  F+ M     A 
Sbjct: 75  TYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFD-MVKKLLAE 133

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           V+      + F  N+++S       + +    + E+ +M    D  T NIL +   R G 
Sbjct: 134 VQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGG 193

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYC 245
            D+   V   M+     P VVTYN +I    KA  +++  E FK+++ R    P+ +TY 
Sbjct: 194 VDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYT 253

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           S++S + K+G + +  ++  ++  S +  +   FN +I  +G+ G++ +   ++  M   
Sbjct: 254 SIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYF 313

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            C  D +TF ++I  Y   G         N M
Sbjct: 314 DCSADVVTFTSLIDGYCRAGQVNHGLKFWNVM 345


>gi|255661184|gb|ACU25761.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 426

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 57
           GL P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   GLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 58  --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                    S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTM 123

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFSEMREJK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M+ RG++PNSITY +++S + K G + +   + +++ +S + +D   F  +I AY +A
Sbjct: 243 QEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     PDNI   T I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA-AGVMPNTXSYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  J       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 416



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 74/171 (43%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RQRGLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ +++ + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKL 171



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 50/107 (46%)

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           + RG+ P+  TY +L++ + K GL     S L+++E   V  D   ++ +I    +  D 
Sbjct: 1   RQRGLSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            K   +F  +K     PD + +  MI  +    +   A++L  +M A
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA 107


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 151/307 (49%), Gaps = 2/307 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           AS L   M+   + P+V  + +L+ A+ + G L EA    ++M   S   P++ TY+ LI
Sbjct: 310 ASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRS-IDPNIVTYNSLI 368

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                  R D  ++I   M         VTYNT+I G+ KAK+ EE    F  M + G  
Sbjct: 369 NGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRG-L 427

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             +  T N++I     +G+ +  +K + +    GV  DI T +IL     + G  +K   
Sbjct: 428 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 487

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V +++QK    P + TYNI+IE   KAG +E   + F  +  +G+KPN I Y +++S + 
Sbjct: 488 VFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC 547

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           + GL  + D++ R+++    + D+  +N +I A  + GD     EL   M+    V D  
Sbjct: 548 RKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDAS 607

Query: 313 TFATMIQ 319
           T + +I 
Sbjct: 608 TISMVIN 614



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 152/323 (47%), Gaps = 2/323 (0%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+  +A  L + M+  G KP    +  L+          EA + I+ M +   C+PD++T
Sbjct: 165 KRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVA-RGCQPDLFT 223

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y  ++    K    DL   +L +M    IE + V YNTIIDG  K K  ++    F+ M 
Sbjct: 224 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKM- 282

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+ G  PD+FT NS+IS   N G      +  ++     +  ++ T N L  ++ + G  
Sbjct: 283 ETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKL 342

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            +   + D M +R   P +VTYN +I  F     +++ ++ F  M  +   P+ +TY +L
Sbjct: 343 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 402

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  + KA  + +   + R++    ++ +T  +N +I    QAGD +   ++F  M     
Sbjct: 403 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 462

Query: 308 VPDNITFATMIQAYNALGMTEAA 330
            PD IT++ ++      G  E A
Sbjct: 463 PPDIITYSILLDGLCKYGKLEKA 485



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 164/338 (48%), Gaps = 4/338 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK+ +   A  L + M    ++ +V +Y  ++    +   +D+AF   N M++  
Sbjct: 227 VVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMET-K 285

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KPDV+TY+ LI     + R+    ++L++M    I  + VT+N++ID + K  K  E 
Sbjct: 286 GIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEA 345

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E  F  M++     P+I T NS+I+ +     +++ ++ +          D+ T N L K
Sbjct: 346 EKLFDEMIQRS-IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIK 404

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + +A   ++   +   M +R      VTYN +I+   +AG  +  ++ FKKM   G+ P
Sbjct: 405 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 464

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + ITY  L+    K G + K   +   ++ S +  +   +N +I    +AG VE   +LF
Sbjct: 465 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            ++  +   P+ I + TMI  +   G+ E A  L  +M
Sbjct: 525 CSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 562



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 161/334 (48%), Gaps = 2/334 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K  + A  LF  M + G+KP V  Y +L+S     G   +A   ++DM       P
Sbjct: 266 LCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIE-RKINP 324

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V T++ LI +  K  +    EK+  EM    I+ + VTYN++I+G+    + +E +  F
Sbjct: 325 NVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIF 384

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + MV S  C PD+ T N++I  +  +  +E+  + + E +  G+  +  T N L +   +
Sbjct: 385 TLMV-SKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 443

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  D  + +   M      P ++TY+I+++   K G +EK    F+ ++   M+PN  T
Sbjct: 444 AGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYT 503

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  ++    KAG +     +   +    V  +   +  +IS + + G  E+   LF  MK
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMK 563

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           E   +PD+  + T+I+A    G   A+  L  +M
Sbjct: 564 EDGTLPDSGCYNTLIRARLRDGDKAASAELIKEM 597



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 167/398 (41%), Gaps = 70/398 (17%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF  M+     PS+  ++ L+SA  +    D   S    M+++     + YTYSI
Sbjct: 63  DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG-IPHNHYTYSI 121

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    +  +  L   +L +M  LG E   VT +++++GY   K+  E  +    MVE G
Sbjct: 122 LLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMG 181

Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIE--- 153
                                             GC PD+FT  ++++     G+I+   
Sbjct: 182 YKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 241

Query: 154 ----KMEK----------------------------WYNEFNLMGVKADIQTLNILTKSY 181
               KMEK                             +N+    G+K D+ T N L    
Sbjct: 242 SLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCL 301

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
              G +     ++  M +R   P VVT+N +I+ F K G + + E+ F +M  R + PN 
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNI 361

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY SL++ +     + +   I   + + D + D   +N +I  + +A  VE+  ELF  
Sbjct: 362 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFRE 421

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M +R  V + +T+ T+IQ     G  + AQ +  KM++
Sbjct: 422 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS 459



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 127/313 (40%), Gaps = 38/313 (12%)

Query: 32  YTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           Y   +S  G S L LD+A +   +M   S   P +  +S L+ +  K ++FD++  +  +
Sbjct: 48  YREKLSRNGLSELKLDDAVALFGEMVK-SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQ 106

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M  LGI  +  TY+ +++ + +  +     +    M++                      
Sbjct: 107 MQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMK---------------------- 144

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
                         +G + DI TL+ L   Y       +  +++D M +  + P  VT+N
Sbjct: 145 --------------LGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFN 190

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I          +      +M  RG +P+  TY ++V+   K G I    S+L+++E  
Sbjct: 191 TLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKG 250

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +  +   +N II    +   ++   +LF  M+ +   PD  T+ ++I      G    A
Sbjct: 251 KIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDA 310

Query: 331 QNLENKMIAMKEN 343
             L + MI  K N
Sbjct: 311 SRLLSDMIERKIN 323


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 159/344 (46%), Gaps = 10/344 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--C 61
           L K K+ ++A  L E + ++G  P++  Y AL++   + G L+EA   I+ ++ + D  C
Sbjct: 44  LAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA---IDLLRKIVDNGC 100

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PDV TY+ LI    K  R     K+  EM+  G+    V Y  +I G  +A K  +  S
Sbjct: 101 TPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASS 160

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +  M  S GC PD+ TL++MI     +G I    + +      G+  +    + L    
Sbjct: 161 VYKTMT-SQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 219

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            +A   D    ++  M+K F  P  +TYNI+I+   K+G +     +F +M   G KP+ 
Sbjct: 220 CKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDV 279

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY  L+S + KAG       +   + +S    +   +  +IS   +   + K    +  
Sbjct: 280 YTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQH 339

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           MKER C PD+  +++++      G  E    L ++M    E SG
Sbjct: 340 MKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM----ERSG 379



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 148/339 (43%), Gaps = 14/339 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK K+  +A  LF+ M S GL      YTAL+    Q+G + +A S    M S   C P
Sbjct: 114 LGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTS-QGCVP 172

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T S +I    K  R     +I   M   G+  + V Y+ +I G  KA+K +      
Sbjct: 173 DVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEML 232

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M +   C PD  T N +I     SG++     +++E    G K D+ T NIL   + +
Sbjct: 233 AQM-KKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCK 291

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  D    V D M      P VVTY  +I    K   + K   Y++ MK RG  P+S  
Sbjct: 292 AGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFV 351

Query: 244 YCSLVSAYSKAGLI----MKVDSILRQ-VENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           Y SLV    K+G +    M  D + R  V NS       F  C      +A  V++   L
Sbjct: 352 YSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLC------KANRVDEAVSL 405

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           F  +++   +P    + ++I A    G     Q +  +M
Sbjct: 406 FNAIRKEG-MPHPYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 141/306 (46%), Gaps = 2/306 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           ++ L++   ++G+L +A S   +  + + C  D++TY+ ++    K  +      ++ ++
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQE-TTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
           +  G   +  TYN +++G  K  + EE       +V++G C PD+ T  S+I   G    
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNG-CTPDVVTYTSLIDGLGKKKR 119

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
             +  K + E    G+  D      L +   +AG   +  SV   M  +   P VVT + 
Sbjct: 120 SFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLST 179

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+   KAG I      FK M+ RG+ PN + Y +L+    KA  +     +L Q++ + 
Sbjct: 180 MIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 239

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
              DT  +N +I    ++GDV      F  M E  C PD  T+  +I  +   G T+AA 
Sbjct: 240 CTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAC 299

Query: 332 NLENKM 337
            + + M
Sbjct: 300 GVFDDM 305



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 93/209 (44%), Gaps = 4/209 (1%)

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T + +I+    +G + +      E    G   DI T   +     +     +  ++M+ +
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
                 PT+ TYN ++    K G +E+  +  +K+   G  P+ +TY SL+    K    
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            +   + +++ +  + LDT  +  +I    QAG + +   ++ TM  + CVPD +T +TM
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 318 IQAYNALGMTEAA----QNLENKMIAMKE 342
           I      G   AA    +++E + +A  E
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNE 209


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 157/333 (47%), Gaps = 8/333 (2%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P++A  +F  ++ +G KPS+  YT LV+A  +        S I+ ++  +  KPD   +
Sbjct: 334 RPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEK-NGLKPDTILF 392

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I + ++    D   KI  +M   G + +A T+NT+I GYGK  K EE       M+ 
Sbjct: 393 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLR 452

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                P+  T N ++ A+ N   IE+      +    GVK D+ T N L K+Y R G   
Sbjct: 453 DEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIG--- 509

Query: 189 KMRSVMDFMQKRFFF----PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              +  D +  R       P V T   ++  + + G +E+   +F +MK  G+ PN   +
Sbjct: 510 STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVF 569

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+  +     +  V  ++  +E   V  D   F+ +++A+   GD+++  E++  M E
Sbjct: 570 NSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLE 629

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               PD   F+ + + Y   G  E A+ + N+M
Sbjct: 630 GGIDPDIHAFSILAKGYARAGEPEKAKQILNQM 662



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 163/330 (49%), Gaps = 9/330 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           GK  + E++S L ++ML D  L+P+      LV A+     ++EA++ +  M+S    KP
Sbjct: 435 GKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYG-VKP 493

Query: 64  DVYTYSILIKSCTKFHRFDLIEK-ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           DV T++ L K+  +       E  I+  M +  ++ +  T  TI++GY +  K EE    
Sbjct: 494 DVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRF 553

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M E  G HP++F  NS+I  + N  +++ + +  +     GVK D+ T + L  ++ 
Sbjct: 554 FYRMKEL-GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWS 612

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G   +   +   M +    P +  ++I+ + + +AG  EK ++   +M+  G++PN +
Sbjct: 613 SVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVV 672

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGELF 299
            Y  ++S +  AG + K   + +++    ++  +P    +  +I  +G+A    K  EL 
Sbjct: 673 IYTQIISGWCSAGEMKKAMQVYKKM--CGIVGLSPNLTTYETLIWGFGEAKQPWKAEELL 730

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEA 329
             M+ ++ VP   T   +   + ++G++ +
Sbjct: 731 KDMEGKNVVPTRKTMQLIADGWKSIGVSNS 760



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 156/344 (45%), Gaps = 15/344 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA  +FE M   G KP+   +  L+  YG+ G L+E+   ++ M      +P+  T +I
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 465

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++     + +    I+ +M   G++   VT+NT+   Y +       E      +   
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHN 525

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T  ++++ Y   G +E+  +++     +GV  ++   N L K +      D +
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 585

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V+D M++    P VVT++ ++  +   G +++ EE +  M   G+ P+   +  L   
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--- 307
           Y++AG   K   IL Q+    V  +   +  IIS +  AG+++K  +++  M    C   
Sbjct: 646 YARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM----CGIV 701

Query: 308 --VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
              P+  T+ T+I  +        A+ L      +K+  GK ++
Sbjct: 702 GLSPNLTTYETLIWGFGEAKQPWKAEEL------LKDMEGKNVV 739



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 66/119 (55%)

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G  ++    F  +   G KP+ ITY +LV+A ++      + S++ +VE + +  DT  F
Sbjct: 333 GRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILF 392

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           N II+A  ++G++++  ++F  MKE  C P   TF T+I+ Y  +G  E +  L + M+
Sbjct: 393 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMML 451



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 101/214 (47%), Gaps = 2/214 (0%)

Query: 122 SFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           SF  ++ SGG    D+ +   +++     G  ++    +N     G K  + T   L  +
Sbjct: 304 SFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTA 363

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             R   +  + S++  ++K    P  + +N +I    ++G++++  + F+KMK  G KP 
Sbjct: 364 LTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPT 423

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF 299
           + T+ +L+  Y K G + +   +L  +   +++  +    N ++ A+     +E+   + 
Sbjct: 424 ASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIV 483

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             M+     PD +TF T+ +AY  +G T  A+++
Sbjct: 484 YKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDM 517


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 154/315 (48%), Gaps = 2/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P   +YT ++  + ++GL+ +A    ++M     C PDV TY+ L+    K  R   
Sbjct: 326 GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG-CLPDVVTYNTLLNGLCKERRLLD 384

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            E +L EM   G+     T+ T+I GY    K ++    F  M+      PDI T N++I
Sbjct: 385 AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR-LRPDIVTYNTLI 443

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 G+++K    +++ +   +  +  T +IL  S+   G  +     +D M  +   
Sbjct: 444 DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL 503

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P ++TYN +I+ + ++G++ K +++ +KM    + P+ ITY +L+  Y K   +     +
Sbjct: 504 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 563

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L  +E   V  D   +N +I+ +   G+V++ G +F  M  +   PD  T+ +MI  +  
Sbjct: 564 LNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVT 623

Query: 324 LGMTEAAQNLENKMI 338
            G ++ A  L ++M+
Sbjct: 624 AGNSKEAFQLHDEML 638



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 159/329 (48%), Gaps = 2/329 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +++ M   G+KP +  ++ L+  + + G +D A + + +M+      PD   Y++
Sbjct: 278 EEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFG-LVPDGVIYTM 336

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    +        ++  EM   G     VTYNT+++G  K ++  + E   + M E G
Sbjct: 337 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 396

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T  ++I  Y   G ++K  + ++      ++ DI T N L     R G  DK 
Sbjct: 397 -VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKA 455

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + D M  R  FP  VTY+I+I++  + G +E    +  +M ++G+ PN +TY S++  
Sbjct: 456 NDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 515

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y ++G + K    L+++  + V  D   +N +I  Y +   +    +L   M++    PD
Sbjct: 516 YCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPD 575

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
            +T+  +I  ++  G  + A  +  KM A
Sbjct: 576 VVTYNMLINGFSVHGNVQEAGWIFEKMCA 604



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 139/314 (44%), Gaps = 36/314 (11%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S+ + + YT +I++ +  K   FD ++ +++EM    +    VT+N ++D   +A   E 
Sbjct: 150 SNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEA 209

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             +   +MV S G  P I T NS++     SG  +K  + + E +  GV  D+++  IL 
Sbjct: 210 AMALVDSMV-SKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILI 268

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + R G  ++   +   M+ R   P +V+++ +I  F + G ++    Y ++M+  G+ 
Sbjct: 269 GGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 328

Query: 239 PNSITYCSLVSAYSKAGL-----------------------------------IMKVDSI 263
           P+ + Y  ++  + +AGL                                   ++  + +
Sbjct: 329 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 388

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L ++    V  D   F  +I  Y   G ++K  +LF TM  +   PD +T+ T+I     
Sbjct: 389 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 448

Query: 324 LGMTEAAQNLENKM 337
            G  + A +L + M
Sbjct: 449 QGDLDKANDLWDDM 462



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 149/331 (45%), Gaps = 2/331 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  L + M+S GLKP +  Y +++    +SG+ D+A+    +M       PDV +++I
Sbjct: 208 EAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFG-VAPDVRSFTI 266

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +    +   KI  EM + GI+   V+++ +I  + +  K +   +    M    
Sbjct: 267 LIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM-RCF 325

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD      +I  +  +G +    +  +E    G   D+ T N L     +       
Sbjct: 326 GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 385

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M++R   P + T+  +I  +   G ++K  + F  M ++ ++P+ +TY +L+  
Sbjct: 386 EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 445

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G + K + +   + + ++  +   ++ +I ++ + G VE        M  +  +P+
Sbjct: 446 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 505

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            +T+ ++I+ Y   G     Q    KM+  K
Sbjct: 506 IMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 536



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 105/217 (48%), Gaps = 6/217 (2%)

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           +V S     + +TLN M+  Y  +   +K++   +E     V  D+ T N++  +  RAG
Sbjct: 146 LVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAG 205

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             +   +++D M  +   P +VTYN V++   ++G  +K  E FK+M   G+ P+  ++ 
Sbjct: 206 DAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFT 265

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+  + + G I +   I +++ +  +  D   F+C+I  + + G   KM      ++E 
Sbjct: 266 ILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRG---KMDHAMAYLREM 322

Query: 306 HC---VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            C   VPD + +  +I  +   G+   A  + ++M+ 
Sbjct: 323 RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVG 359



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 1/122 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
             + M+ + + P +  Y  L+  Y +   + +AF  +N M+     +PDV TY++LI   
Sbjct: 528 FLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEK-EKVQPDVVTYNMLINGF 586

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           +          I  +M   GIE    TY ++I+G+  A   +E       M++ G    D
Sbjct: 587 SVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDD 646

Query: 136 IF 137
            F
Sbjct: 647 KF 648


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 162/337 (48%), Gaps = 2/337 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  +  +AS + + M + G++P V  YT L     ++G   +A   ++ M    + +P
Sbjct: 265 LGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGE-EP 323

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-GKAKKFEEMESS 122
              TY++++    K  R D    ++  M   G +  AVTYNT++ G  G  K  E M+  
Sbjct: 324 GTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLW 383

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              + E     PD+FT N++I      G +    + ++    MG++ +I T N L + Y 
Sbjct: 384 KLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYL 443

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            A    +   +  +  +  F P  +TY+++I    K   +      F KMK  G++P  I
Sbjct: 444 AARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVI 503

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y +L+++  +   + +  S+ +++ N +  +D   FN II    +AGDV+   EL   M
Sbjct: 504 DYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEM 563

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
                VPD +TF+ +I  ++ LGM + A  L  KM++
Sbjct: 564 FMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVS 600



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 157/350 (44%), Gaps = 3/350 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +Q +    ++  M+S  + P     +AL  ++  +     AFS ++ M        
Sbjct: 52  LRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTK-RGFGV 110

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEM--SYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +VY  ++++K   +  + D    + ++M  +Y  +    VTYNT+++G+ KAK+  E   
Sbjct: 111 NVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARV 170

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F AM + G C P++ T + +I  Y  SG + +      E    G+KAD+   + L  ++
Sbjct: 171 LFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAF 230

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
              G  +  R + D M +R   P VVTY+ +++  G+ G   +  E  K M  RG++P+ 
Sbjct: 231 CGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDV 290

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           + Y  L     K G       +L  +        T  +N +++   +   ++    +   
Sbjct: 291 VAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEM 350

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
           M ++   PD +T+ T+++     G    A +L   +++ K +    +  C
Sbjct: 351 MVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTC 400



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 153/321 (47%), Gaps = 4/321 (1%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G CK+   + A  + E+M+  G KP    Y  L+     +G + EA      + S 
Sbjct: 330 VVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSE 389

Query: 59  S-DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
               KPDV+T + LI+   K  R     +I + M  +G++ + VTYN +I+GY  A+K  
Sbjct: 390 KFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLI 449

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E    +   VESG   P+  T + MI+       +      + +    G++  +   N L
Sbjct: 450 EALKLWKYAVESG-FSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNAL 508

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             S  R    ++ RS+   M+       VV++NI+I+   KAG ++  +E   +M    +
Sbjct: 509 MTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDL 568

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P+++T+  L++ +SK G++ +   +  ++ +   +     F+ ++  YG  G+ EK+  
Sbjct: 569 VPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIIS 628

Query: 298 LFLTMKERHCVPDNITFATMI 318
           L   M ++  V D+   +T++
Sbjct: 629 LLHQMADKDVVLDSKLTSTIL 649



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 4/239 (1%)

Query: 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
           +T+ID   KA++++ + S +  MV S    P   +L+++  ++ N+ +        +   
Sbjct: 46  STLIDNLRKARQYDAVVSVYHKMV-SALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMT 104

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF--FFPTVVTYNIVIETFGKAGH 221
             G   ++  LN++ K + R+G  DK  S+   M++ +    P  VTYN ++  F KA  
Sbjct: 105 KRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKR 164

Query: 222 IEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
           + +    F+ MK  G  +PN +TY  L+  Y K+G + +   +L ++E   +  D   ++
Sbjct: 165 LAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYS 224

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +ISA+   GD+E   ELF  M  R   P+ +T++ ++Q     G    A  +   M A
Sbjct: 225 SLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTA 283


>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
 gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
          Length = 822

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 157/316 (49%), Gaps = 4/316 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G      QA  + + M  +G+ P +  +  ++SAY       +A S    MK  +  +PD
Sbjct: 224 GSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG-AKVRPD 282

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESS 122
             T++I+I   +K  +      +   M     EC    VT+ +I+  Y    + E   + 
Sbjct: 283 TTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAV 342

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F AM+ + G  P+I + N+++ AY   G  E     + +    G+  D+ +   L  SYG
Sbjct: 343 FEAML-AEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLLNSYG 401

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R+    K + V   M+K    P VVTYN +I+ +G  G + +  E F++M+  G KPN +
Sbjct: 402 RSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTKPNVV 461

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           + C+L++A S++   + V+++L   ++  + L+T  +N  I +Y  A ++EK   L+ TM
Sbjct: 462 SVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQTM 521

Query: 303 KERHCVPDNITFATMI 318
           +++    D++TF  +I
Sbjct: 522 RKKKVKADSVTFTILI 537



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 146/310 (47%), Gaps = 4/310 (1%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D+Y  ++  + +   +D+A     +M+  S CKPD  TY  LI +  +  ++     ++ 
Sbjct: 144 DIYNMMIRLHARHNWVDQARGLFFEMQKWS-CKPDAETYDALINAHGRAGQWRWAMNLMD 202

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M    I  S  TYN +I+  G +  + +       M ++G   PD+ T N ++SAY + 
Sbjct: 203 DMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKMTDNG-VGPDLVTHNIVLSAYKSG 261

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVV 207
               K   ++       V+ D  T NI+     + G   +   V + M+ +     P VV
Sbjct: 262 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVV 321

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           T+  ++  +   G IE     F+ M   G+KPN ++Y +L+ AY+  G+     S+   +
Sbjct: 322 TFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDI 381

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           + + ++ D   +  ++++YG++    K  E+FL M++    P+ +T+  +I AY + G  
Sbjct: 382 KRNGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFL 441

Query: 328 EAAQNLENKM 337
             A  +  +M
Sbjct: 442 AEAVEIFRQM 451



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 146/313 (46%), Gaps = 37/313 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E    +FE ML++GLKP++  Y AL+ AY   G+ + A S   D+K  +   PDV     
Sbjct: 337 ENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKR-NGIVPDV----- 390

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
                                         V+Y ++++ YG++++  + +  F  M+   
Sbjct: 391 ------------------------------VSYTSLLNSYGRSRQPGKAKEVF-LMMRKE 419

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T N++I AYG++G + +  + + +    G K ++ ++  L  +  R+     +
Sbjct: 420 RRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKKVNV 479

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +V+   Q R        YN  I ++  A  +EK    ++ M+ + +K +S+T+  L+S 
Sbjct: 480 ETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQTMRKKKVKADSVTFTILISG 539

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +     +  S L+++E+  + L    ++ ++ AY + G V +   +F  MK   C PD
Sbjct: 540 SCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPD 599

Query: 311 NITFATMIQAYNA 323
            I + +M+ AYNA
Sbjct: 600 VIAYTSMLHAYNA 612



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+  N MI  +     +++    + E      K D +T + L  ++GRAG +    ++M
Sbjct: 144 DIY--NMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLM 201

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M +    P+  TYN +I   G +G+  +  E  KKM   G+ P+ +T+  ++SAY   
Sbjct: 202 DDMLRAAIAPSRSTYNNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSG 261

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 312
               K  S    ++ + V  DT  FN II    + G   +  ++F +M+++   C PD +
Sbjct: 262 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVV 321

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           TF +++  Y+  G  E  + +   M+A
Sbjct: 322 TFTSIMHLYSVRGEIENCRAVFEAMLA 348



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 124/307 (40%), Gaps = 37/307 (12%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
           S G+  +   Y + + +Y  +  L++A +    M+     K D  T++ILI    +  ++
Sbjct: 488 SRGINLNTAAYNSAIGSYINAAELEKAIALYQTMRK-KKVKADSVTFTILISGSCRMSKY 546

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
                 L EM  L I  +   Y++++  Y K  +  E ES F+ M +  GC PD+    S
Sbjct: 547 PEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQM-KMAGCKPDVIAYTS 605

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR- 200
           M+ AY  S    K  + + E    G++ D    + L +++ + G    +  +MD M+++ 
Sbjct: 606 MLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKE 665

Query: 201 ------FFFPTVVTYNIVIET----------------------------FGKAGHIEKME 226
                  FF      N + E                             FGK+G +E M 
Sbjct: 666 VPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLYLFGKSGKVEAMM 725

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
           + F K+   G++ N  TY  L+      G   K   +L  + ++ +      +  IIS  
Sbjct: 726 KLFYKIIASGVEINFKTYAILLEHLLAVGNWRKYIEVLEWMSDAGIQPSNQMYRDIISFG 785

Query: 287 GQAGDVE 293
            ++  +E
Sbjct: 786 ERSAGIE 792



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 39/260 (15%)

Query: 1   MVMLGKC---KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           +++ G C   K PE  S L E M    +  + +VY++++ AY + G + EA S  N MK 
Sbjct: 535 ILISGSCRMSKYPEAISYLKE-MEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMK- 592

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-- 115
           ++ CKPDV  Y+ ++ +     ++    ++  EM   GIE  ++  + ++  + K  +  
Sbjct: 593 MAGCKPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPS 652

Query: 116 --------FEEMESSFSAMV---ESGGCH----------------PDIFTL-----NSMI 143
                     E E  F+  V       C+                P + +L     N M+
Sbjct: 653 NVFVLMDLMREKEVPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQML 712

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             +G SG +E M K + +    GV+ + +T  IL +     G + K   V+++M      
Sbjct: 713 YLFGKSGKVEAMMKLFYKIIASGVEINFKTYAILLEHLLAVGNWRKYIEVLEWMSDAGIQ 772

Query: 204 PTVVTYNIVIETFGKAGHIE 223
           P+   Y  +I    ++  IE
Sbjct: 773 PSNQMYRDIISFGERSAGIE 792


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 154/319 (48%), Gaps = 2/319 (0%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C Q E     F  ML++GLKP++  Y AL+ AY   G+  EAFS  N++K  +   PDV 
Sbjct: 352 CGQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKK-NGFHPDVV 410

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +Y+ L+ +  K  + +   K+   M     + + V+YN +ID YG      E       M
Sbjct: 411 SYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEM 470

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E  G  P+I ++ ++++A G  G   K++   +   L G+K +    N    SY   G 
Sbjct: 471 -ERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGE 529

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           YDK  S+   M+ +   P  VTYN++I    K     +   +  +M    +  +   Y S
Sbjct: 530 YDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSS 589

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++ AYSK G + + +S+  +++      D   +  +I AY  A + EK   LFL M+   
Sbjct: 590 VICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDD 649

Query: 307 CVPDNITFATMIQAYNALG 325
             PD+I  +++++A+N  G
Sbjct: 650 VQPDSIACSSLMRAFNKGG 668



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 151/301 (50%), Gaps = 4/301 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+ P +  +  ++SAY +     +  S    MK  ++ +PD  T +I+I    K  
Sbjct: 258 MTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKG-TNIRPDTTTLNIVIYCLVKLG 316

Query: 80  RFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           +      I   M     EC    VT+ TII  Y    + E  +++F+ M+ + G  P+I 
Sbjct: 317 QNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTML-AEGLKPNIV 375

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           + N++I AY + G  ++    +NE    G   D+ +   L  +YG++G  +K   V + M
Sbjct: 376 SYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELM 435

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++    P +V+YN +I+ +G  G + +  E   +M+  G++PN ++ C+L++A  + G  
Sbjct: 436 RRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQK 495

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           +K+ S+L   E   + L+T  +N  I +Y   G+ +K   L+  M+ +   PD +T+  +
Sbjct: 496 VKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVL 555

Query: 318 I 318
           I
Sbjct: 556 I 556



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 152/341 (44%), Gaps = 39/341 (11%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           +  L+    Q G L+ +      MK+  +       Y+++I+   + +  D    +  EM
Sbjct: 129 FPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEM 188

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
                +  A TYN +I+ +G+A ++    +    M+ +    P   T N++I+A G+SGN
Sbjct: 189 QKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAA-IPPSRSTYNNLINACGSSGN 247

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-------------- 197
            ++      +    GV  D+ T NI+  +Y R   Y K+ S  + M              
Sbjct: 248 WKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNI 307

Query: 198 -----------------------QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
                                  ++   +P VVT+  +I  +   G IE  +  F  M  
Sbjct: 308 VIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLA 367

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+KPN ++Y +L+ AY+  G+  +  S+  +++ +    D   +  +++AYG++G  EK
Sbjct: 368 EGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEK 427

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
             ++F  M+  HC P+ +++  +I AY + G +TEA + L 
Sbjct: 428 AMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILH 468



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 149/321 (46%), Gaps = 39/321 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  +PE+A  +FE+M  +  KP++  Y AL+ AYG  GLL EA   +++M+  +  +P+
Sbjct: 420 GKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMER-NGVQPN 478

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + +   L+ +C +  +   I+ +L+     GI+ +   YN+ I  Y    ++++  S + 
Sbjct: 479 IVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYR 538

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           AM  +    PD  T N +IS         KM K                       YG A
Sbjct: 539 AM-RTKKVKPDPVTYNVLISGCC------KMSK-----------------------YGEA 568

Query: 185 -GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+M  +   + K         Y+ VI  + K G + + E  F KMK  G +P+ IT
Sbjct: 569 LGFLDEMMDLKIPLSKE-------VYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVIT 621

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +++ AY  A    K  ++  ++E  DV  D+   + ++ A+ + G   K+  L   M+
Sbjct: 622 YTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMR 681

Query: 304 ERHCVPDNITFATMIQAYNAL 324
           E+    +N +F  M+ A + L
Sbjct: 682 EKKIPFNNSSFFEMVSACSLL 702



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+  N MI  +     +++    + E      K D +T N L  ++GRAG +    ++M
Sbjct: 163 DIY--NMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIM 220

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M +    P+  TYN +I   G +G+ ++     KKM   G+ P+ +T+  ++SAY + 
Sbjct: 221 DDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRG 280

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 312
               KV S    ++ +++  DT   N +I    + G   K  ++F +MKE+   C PD +
Sbjct: 281 NQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVV 340

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           TF T+I  Y+  G  E  Q   N M+A
Sbjct: 341 TFTTIIHLYSVCGQIENCQTAFNTMLA 367



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 136/319 (42%), Gaps = 38/319 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C Q  +   +       G+K +   Y + + +Y   G  D+A S    M++    KPD
Sbjct: 490 GRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRT-KKVKPD 548

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY++LI  C K  ++      L EM  L I  S   Y+++I  Y K  +  E ES F+
Sbjct: 549 PVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFT 608

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +  GC PD+ T  +MI AY  + N EK    + E     V+ D    + L +++ + 
Sbjct: 609 KM-KMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKG 667

Query: 185 GMYDKMRSVMDFMQKR-------FFF-----------------------PTVVTYNI--- 211
           G   K+  + +FM+++        FF                       P++   +I   
Sbjct: 668 GQPAKVLVLAEFMREKKIPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLL 727

Query: 212 --VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
             ++   GK+G IE M + F K+   G + N  TY  L+     AG   K   +L+ +E 
Sbjct: 728 NQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYIEVLQWMEE 787

Query: 270 SDVILDTPFFNCIISAYGQ 288
           + +      +   IS++ Q
Sbjct: 788 AGLQPSVGMYRS-ISSFAQ 805


>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 158/334 (47%), Gaps = 3/334 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            + ++P +A  LF+VML  G +  ++ Y AL+ AY ++   ++A  T   ++      PD
Sbjct: 333 ARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRTFIWIQD-KGLTPD 391

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V ++S LI +C    + +   ++L  M     + + V++  ++  Y K   +E+ E  F 
Sbjct: 392 VMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFH 451

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           AM++SG C P+     S++SAY      +K+     +   +G+K D+   +    +  +A
Sbjct: 452 AMLDSG-CPPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAKA 510

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G ++        M K    P +VTY+ +I+ +G  G  EK E  FK M   G++PN    
Sbjct: 511 GQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESVFKLMLRVGIRPNPQAC 570

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           C+L+ AY K   + KV      +E    V  D   +  I  A    G+ ++  +    M+
Sbjct: 571 CALLRAYGKGKELEKVIIFFESMEPQYGVEPDKYAYAAIFWACWTCGEWQRAVKYIDRME 630

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              C PD++ + T+I  Y A G  + A  +  +M
Sbjct: 631 MAGCTPDSVIYTTLINMYEANGQIDKAMQVLERM 664



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 153/333 (45%), Gaps = 37/333 (11%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV  G+C   + A  LFE M   G+ P    +T LVSA   +GL D A S I DM     
Sbjct: 259 MVACGRCASGDTAVELFEEMEKLGIVPDRITFTGLVSATTAAGLWDRAQSFI-DMMQARG 317

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
               ++ Y  +  +C +  +      +   M   G E    +YN ++  Y +  ++E+  
Sbjct: 318 FSIGLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAM 377

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            +F   ++  G  PD+ + +S+ISA  N+G  E+                   L +L + 
Sbjct: 378 RTF-IWIQDKGLTPDVMSWSSLISACANAGQAER------------------ALEVLER- 417

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                           M+     P VV++  +++ + K G+ EK EE F  M   G  PN
Sbjct: 418 ----------------MKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPN 461

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            + +CSL+SAY K     KV   + ++E   + LD   ++  ISA  +AG  E   E F 
Sbjct: 462 EVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAKAGQWELAEEKFK 521

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            M +  C+P+ +T++++I+AY  +G+ E A+++
Sbjct: 522 QMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESV 554



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/307 (18%), Positives = 120/307 (39%), Gaps = 71/307 (23%)

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           E ++  ++  G+     + N ++   G+ + +      F A   S G  P+ +   ++I+
Sbjct: 167 EDVMKIVNETGLRVDVRSMNVVVWQLGQMQNWYAATKVFRAF-RSAGVEPNAYVCTTLIA 225

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR--------------------- 183
           A G    + +  K +      G++  I T N L  + GR                     
Sbjct: 226 ALGCGRRLSQALKLFRWMEKAGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVP 285

Query: 184 --------------AGMYDKMRSVMDFMQKRFF--------------------------F 203
                         AG++D+ +S +D MQ R F                          F
Sbjct: 286 DRITFTGLVSATTAAGLWDRAQSFIDMMQARGFSIGLHEYIEMQWACARARKPREAYGLF 345

Query: 204 PTVV---------TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             ++         +YN ++  + +    E     F  ++ +G+ P+ +++ SL+SA + A
Sbjct: 346 QVMLEQGYELKLESYNALLCAYERTAQWEDAMRTFIWIQDKGLTPDVMSWSSLISACANA 405

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G   +   +L +++ SD   +   +  ++ AY + G+ EK  E+F  M +  C P+ + +
Sbjct: 406 GQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPNEVAW 465

Query: 315 ATMIQAY 321
            +++ AY
Sbjct: 466 CSLLSAY 472



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%)

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V + N+V+   G+  +     + F+  +  G++PN+    +L++A      + +   + R
Sbjct: 182 VRSMNVVVWQLGQMQNWYAATKVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQALKLFR 241

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            +E + +      FN ++ A G+    +   ELF  M++   VPD ITF  ++ A  A G
Sbjct: 242 WMEKAGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVPDRITFTGLVSATTAAG 301

Query: 326 MTEAAQNLENKMIA 339
           + + AQ+  + M A
Sbjct: 302 LWDRAQSFIDMMQA 315


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 170/342 (49%), Gaps = 16/342 (4%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K+ E+A  L +  L     P+  +YT +++ + ++G +D+AF  +++MK     K DV
Sbjct: 88  KAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKE-RGVKMDV 146

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKK-------F 116
             +S LI+   +  R D   + L +   +G ECS   +TYNT+++G  KA +       F
Sbjct: 147 LLHSTLIQGLCRKGRID---EALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEALELF 203

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           ++ME  + A   S GC PD+ + +++I A   +  ++K  +++     +G   ++ T + 
Sbjct: 204 DDMEKRYEA---SHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSS 260

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L     +     +   ++  M+++ F   ++ +N ++    K    EK  ++F+++   G
Sbjct: 261 LIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSG 320

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
            KPN +TY   V    KAG + +   IL ++  S V  D   ++ II  + +AG ++K  
Sbjct: 321 KKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKAD 380

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++F  M    C+P  +TF T++  ++    +  A  +   M+
Sbjct: 381 DVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMV 422



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 140/297 (47%), Gaps = 5/297 (1%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMK----SVSDCKPDVYTYSILIKSCTKFHRFD 82
           P+V  Y  +V+   ++  +DEA    +DM+    +   C+PDV +YS +I +  K  R D
Sbjct: 178 PNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVD 237

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
              +    M  +G   + VTY+++IDG  K  +  E       M E G    +I   N+M
Sbjct: 238 KAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGF-GINIIDFNAM 296

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           + A   +   EK  +++      G K ++ T N+      +AG  D+   ++  M +   
Sbjct: 297 LHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKV 356

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P V+TY+ +I+ F KAG ++K ++ F +M      P+ +T+ +L+  +S+     +   
Sbjct: 357 TPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFR 416

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           +   + N+  I     +N ++     A  VE   E++  MK +   PD  T+A +IQ
Sbjct: 417 VHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQ 473



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 156/374 (41%), Gaps = 44/374 (11%)

Query: 2   VMLGKCK--QPEQASLLFEVM-----LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIND 54
           V+ G CK  + ++A  LF+ M      S G +P V  Y+ ++ A  ++  +D+A+     
Sbjct: 186 VVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKR 245

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           M++V  C P+V TYS LI    K  R     ++L  M   G   + + +N ++    K  
Sbjct: 246 MRAVG-CAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKND 304

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           + E+    F  +++SG   P++ T N  +     +G +++  +   E     V  D+ T 
Sbjct: 305 EQEKACQFFERLLKSGK-KPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITY 363

Query: 175 NILTKSYGRAGMYDKMRSVMDFM-------------------------QKRF-------- 201
           + +   + +AG  DK   V   M                         ++ F        
Sbjct: 364 SSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVN 423

Query: 202 --FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
             F P + TYN++++    A  +E   E + KMK +  +P+  TY  L+    +A  + +
Sbjct: 424 AGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDE 483

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
               L  +E  +V+ +    + ++    + G+V++   +   + E  C P   TF  +++
Sbjct: 484 AKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVE 543

Query: 320 AYNALGMTEAAQNL 333
                   EAA  L
Sbjct: 544 ELYLRKKWEAASKL 557



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 142/368 (38%), Gaps = 34/368 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E+A   FE +L  G KP+V  Y   V    ++G +DEA+  + +M   S   P
Sbjct: 300 LWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVE-SKVTP 358

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TYS +I    K  R D  + +   M         VT+ T++ G+ + KK  E     
Sbjct: 359 DVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVH 418

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV +G   P + T N ++     + ++E   + Y++      + D  T   L +   R
Sbjct: 419 EDMVNAGFI-PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCR 477

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE-------------------- 223
           A   D+ +  +D M+     P     + ++E   K G ++                    
Sbjct: 478 ARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGET 537

Query: 224 ------------KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
                       K E   K ++  G   ++ TY   V+   KAG   +   ++ Q+    
Sbjct: 538 FKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKG 597

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           V  D   +  ++ +      VE     F  M  R C P  +T+  +I    +  M + A 
Sbjct: 598 VRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAF 657

Query: 332 NLENKMIA 339
            +   M+A
Sbjct: 658 RIFEAMVA 665



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 127/285 (44%), Gaps = 11/285 (3%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           + YT ++L+ +  K  R +   ++L E        + + Y T+I+G+ KA + ++     
Sbjct: 75  NAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQVDQAFELL 134

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG--VKADIQTLNILTKSY 181
             M E G    D+   +++I      G I++      +F  MG     ++ T N +    
Sbjct: 135 DEMKERG-VKMDVLLHSTLIQGLCRKGRIDEA---LEQFKSMGEECSPNVITYNTVVNGL 190

Query: 182 GRAGMYDKMRSVMDFMQKRF-----FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
            +A   D+   + D M+KR+       P V++Y+ VI+   KA  ++K  EYFK+M+  G
Sbjct: 191 CKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVG 250

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             PN +TY SL+    K     +   +L  ++     ++   FN ++ A  +  + EK  
Sbjct: 251 CAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKAC 310

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           + F  + +    P+ +T+   +      G  + A  +  +M+  K
Sbjct: 311 QFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESK 355



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
           N  G + +  T  +L  ++ +A  +++   ++    +   FP  + Y  VI  F KAG +
Sbjct: 68  NKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAGQV 127

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN--SDVILDTPFFN 280
           ++  E   +MK RG+K + + + +L+    + G   ++D  L Q ++   +   +   +N
Sbjct: 128 DQAFELLDEMKERGVKMDVLLHSTLIQGLCRKG---RIDEALEQFKSMGEECSPNVITYN 184

Query: 281 CIISAYGQAGDVEKMGELFLTMKERH-----CVPDNITFATMIQA 320
            +++   +A  +++  ELF  M++R+     C PD I+++T+I A
Sbjct: 185 TVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDA 229



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 11/146 (7%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+ E AS L     S G       Y+  V+   ++G  DEA   I  M  +   +PD  T
Sbjct: 549 KKWEAASKLLR---SPGFVADAATYSLCVAEICKAGKPDEAVEVIEQM-VLKGVRPDEGT 604

Query: 68  YSILIKSCTKFHRFDLIEKILAE---MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           Y  +++S     R   +E  +AE   M+  G     VTY  +I     A   +E    F 
Sbjct: 605 YVAVLRSLCGLDR---VESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFE 661

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSG 150
           AMV + G  P   T+ ++ S   ++G
Sbjct: 662 AMV-AAGFTPQAQTMRTLSSCLRDAG 686


>gi|410110071|gb|AFV61115.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           macrostachya]
          Length = 437

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 156/345 (45%), Gaps = 39/345 (11%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---------------------- 57
           M    L P    Y+ L++ +G+ GL D A S +  M+                       
Sbjct: 3   MRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD 62

Query: 58  ------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
                        S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T
Sbjct: 63  YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYST 122

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           ++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     M
Sbjct: 123 LLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK 
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKA 241

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
               ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I A
Sbjct: 242 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 301

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           Y +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 YERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 342



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 10  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 69

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 70  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 128

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 129 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 188

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   +   ++  +++ +   +N ++  YG+  + EK   L   M
Sbjct: 189 SYNTLLRVYGDAELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 248

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 249 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 283



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 158/372 (42%), Gaps = 75/372 (20%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 69  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVMPNTASYSTLLTMY 127

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 128 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 186

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---TLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM  K  +Q   T N +   YG+   ++K  +
Sbjct: 187 VVSYNTLLRVYGDA---ELFGEAIHLFXLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANN 243

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + + Y +++ AY 
Sbjct: 244 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 303

Query: 253 K-------------------------------AGLIMKVDSILRQV----ENSDVIL--- 274
           +                               AG I +   + RQ     E  D+++   
Sbjct: 304 RAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIMVFER 363

Query: 275 ----------------------------DTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
                                       D+     +++AYG+  + +K   +++ M+E  
Sbjct: 364 MIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVG 423

Query: 307 CV-PDNITFATM 317
           CV  D + F  +
Sbjct: 424 CVFSDEVHFQML 435



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 82/174 (47%)

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           +E     +  D  T + L   +G+ G++D   S +  M++      +V Y+ +IE   K 
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
               K    F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  +
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASY 120

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           + +++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 174



 Score = 41.2 bits (95), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  + ++A++LF+ + S G++    +Y  ++ AY ++GL+  A   ++++KS     
Sbjct: 266 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKS----- 320

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD       I       R +    +  +    G     + +  +I  + K KK+  +   
Sbjct: 321 PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDIMVFERMIHLFSKYKKYANVVEV 380

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           F  M    G  PD   +  +++AYG     +K    Y E   +G
Sbjct: 381 FDKM-RGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVG 423


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 154/315 (48%), Gaps = 2/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P   +YT ++  + ++GL+ +A    ++M     C PDV TY+ L+    K  R   
Sbjct: 265 GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCG-CLPDVVTYNTLLNGLCKERRLLD 323

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            E +L EM   G+     T+ T+I GY    K ++    F  M+      PDI T N++I
Sbjct: 324 AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR-LRPDIVTYNTLI 382

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 G+++K    +++ +   +  +  T +IL  S+   G  +     +D M  +   
Sbjct: 383 DGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGIL 442

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P ++TYN +I+ + ++G++ K +++ +KM    + P+ ITY +L+  Y K   +     +
Sbjct: 443 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 502

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L  +E   V  D   +N +I+ +   G+V++ G +F  M  +   PD  T+ +MI  +  
Sbjct: 503 LNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVT 562

Query: 324 LGMTEAAQNLENKMI 338
            G ++ A  L ++M+
Sbjct: 563 AGNSKEAFQLHDEML 577



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 159/329 (48%), Gaps = 2/329 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +++ M   G+KP +  ++ L+  + + G +D A + + +M+      PD   Y++
Sbjct: 217 EEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFG-LVPDGVIYTM 275

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    +        ++  EM   G     VTYNT+++G  K ++  + E   + M E G
Sbjct: 276 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T  ++I  Y   G ++K  + ++      ++ DI T N L     R G  DK 
Sbjct: 336 -VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKA 394

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + D M  R  FP  VTY+I+I++  + G +E    +  +M ++G+ PN +TY S++  
Sbjct: 395 NDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 454

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y ++G + K    L+++  + V  D   +N +I  Y +   +    +L   M++    PD
Sbjct: 455 YCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPD 514

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
            +T+  +I  ++  G  + A  +  KM A
Sbjct: 515 VVTYNMLINGFSVHGNVQEAGWIFEKMCA 543



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 139/314 (44%), Gaps = 36/314 (11%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S+ + + YT +I++ +  K   FD ++ +++EM    +    VT+N ++D   +A   E 
Sbjct: 89  SNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEA 148

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             +   +MV S G  P I T NS++     SG  +K  + + E +  GV  D+++  IL 
Sbjct: 149 AMALVDSMV-SKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILI 207

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + R G  ++   +   M+ R   P +V+++ +I  F + G ++    Y ++M+  G+ 
Sbjct: 208 GGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 267

Query: 239 PNSITYCSLVSAYSKAGL-----------------------------------IMKVDSI 263
           P+ + Y  ++  + +AGL                                   ++  + +
Sbjct: 268 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 327

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L ++    V  D   F  +I  Y   G ++K  +LF TM  +   PD +T+ T+I     
Sbjct: 328 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 387

Query: 324 LGMTEAAQNLENKM 337
            G  + A +L + M
Sbjct: 388 QGDLDKANDLWDDM 401



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 149/331 (45%), Gaps = 2/331 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  L + M+S GLKP +  Y +++    +SG+ D+A+    +M       PDV +++I
Sbjct: 147 EAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFG-VAPDVRSFTI 205

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +    +   KI  EM + GI+   V+++ +I  + +  K +   +    M    
Sbjct: 206 LIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM-RCF 264

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD      +I  +  +G +    +  +E    G   D+ T N L     +       
Sbjct: 265 GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 324

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M++R   P + T+  +I  +   G ++K  + F  M ++ ++P+ +TY +L+  
Sbjct: 325 EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 384

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G + K + +   + + ++  +   ++ +I ++ + G VE        M  +  +P+
Sbjct: 385 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 444

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            +T+ ++I+ Y   G     Q    KM+  K
Sbjct: 445 IMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 475



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 39/246 (15%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  LF+ ML+  L+P +  Y  L+    + G LD+A    +DM S  +  P+  TYSI
Sbjct: 357 DKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHS-REIFPNHVTYSI 415

Query: 71  LIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           LI S C K    D     L EM   GI  + +TYN+II GY ++    + +     M+ +
Sbjct: 416 LIDSHCEKGQVEDAF-GFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN 474

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
               PD+ T N++I  Y       K +K ++ F L                         
Sbjct: 475 K-VSPDLITYNTLIHGY------IKEDKMHDAFKL------------------------- 502

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
               ++ M+K    P VVTYN++I  F   G++++    F+KM  +G++P+  TY S+++
Sbjct: 503 ----LNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMIN 558

Query: 250 AYSKAG 255
            +  AG
Sbjct: 559 GHVTAG 564



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 105/217 (48%), Gaps = 6/217 (2%)

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           +V S     + +TLN M+  Y  +   +K++   +E     V  D+ T N++  +  RAG
Sbjct: 85  LVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAG 144

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             +   +++D M  +   P +VTYN V++   ++G  +K  E FK+M   G+ P+  ++ 
Sbjct: 145 DAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFT 204

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+  + + G I +   I +++ +  +  D   F+C+I  + + G   KM      ++E 
Sbjct: 205 ILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRG---KMDHAMAYLREM 261

Query: 306 HC---VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            C   VPD + +  +I  +   G+   A  + ++M+ 
Sbjct: 262 RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVG 298


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 158/339 (46%), Gaps = 11/339 (3%)

Query: 10  PEQASLLFEVML--SDGLKPSV---DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK-- 62
           P+ A  LF+ +L   D   P+    ++ +AL  A   +   D     +   K +  C   
Sbjct: 53  PDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPALAVELFKRMDRCACP 112

Query: 63  ---PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P +YTY+ILI    +  R DL   +   +   G+     +YN +IDG+ K  + ++ 
Sbjct: 113 EAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKA 172

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M E  G  P++ T +S+I+    +  ++K E+   +    GV+ +  T N L  
Sbjct: 173 HDLFYKM-EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIH 231

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y  +GM+ +   V   M      P V   N  +    K G I++  + F  M  +G KP
Sbjct: 232 GYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKP 291

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + I+Y +L+  Y+ AG I  +D++   +    V+ D   FN +I+AY + G ++K   +F
Sbjct: 292 DVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMF 351

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M ++   PD ITF+T+I A+  LG  + A    N MI
Sbjct: 352 EDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMI 390



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 143/313 (45%), Gaps = 2/313 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + ++P+    +F  +L  GL P V  Y AL+  + + G +D+A      M+      P+V
Sbjct: 130 RARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEE-QGIMPNV 188

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TYS LI    K    D  E++L +M   G+  + +TYN +I GY  +  ++E    F  
Sbjct: 189 VTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKE 248

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M  S    PD+   NS ++A    G I++    ++   L G K D+ +   L   Y  AG
Sbjct: 249 M-SSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAG 307

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
               M ++ + M      P    +N +I  + + G ++K    F+ M  +G+ P+ IT+ 
Sbjct: 308 CIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFS 367

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +++SA+ + G +         + ++ V  DT  ++C+I       D+ K  EL   M  +
Sbjct: 368 TVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSK 427

Query: 306 HCVPDNITFATMI 318
              P  I F T I
Sbjct: 428 GIPPPCIKFFTSI 440



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 158/331 (47%), Gaps = 9/331 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +++ L+FE M   G+ P +  ++ ++SA+ + G LD+A    N M   +   PD   YS 
Sbjct: 345 DKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMID-TGVPPDTAVYSC 403

Query: 71  LIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNT-IIDGYGKAKKFEEMESSFSAMV 127
           LI+   + +R DL++  +++++M   GI    + + T II+   K  +  E +     ++
Sbjct: 404 LIQG--QCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLII 461

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            +G   P++ T NS++  Y   GN+++     +    +GV+ DI T N L   Y + G  
Sbjct: 462 HTGQ-RPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRI 520

Query: 188 DKMRSVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           D   ++  D + KR    T V+YNI++    +A      +E F +M   GM  +  TY +
Sbjct: 521 DDALTLFRDMLHKRVTL-TSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYAT 579

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++    +     + + +L ++ + +V  D   FN +I A  + G  ++  ELF  +    
Sbjct: 580 VLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYG 639

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            VP  +T+  MI         E A NL + M
Sbjct: 640 LVPTILTYRVMITNLIKEESFEDADNLFSSM 670



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 145/321 (45%), Gaps = 23/321 (7%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           + +C  PE A             P++  Y  L++ Y ++   D        +   +   P
Sbjct: 106 MDRCACPEAA-------------PTIYTYNILINCYRRARRPDLGLPVFGRLLR-TGLGP 151

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV++Y+ LI   +K    D    +  +M   GI  + VTY+++I+G  K K+ ++ E   
Sbjct: 152 DVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVL 211

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV   G  P+  T N +I  Y  SG  ++  + + E +   +  D+   N    +  +
Sbjct: 212 RQMV-GAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCK 270

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   + R + D M  +   P V++Y  ++  +  AG I  M+  F  M   G+ P+   
Sbjct: 271 HGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHV 330

Query: 244 YCSLVSAYSKAGL----IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +L++AY++ G+    ++  + + +Q  N D+I     F+ +ISA+ + G ++   E F
Sbjct: 331 FNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT----FSTVISAFCRLGRLDDAMEKF 386

Query: 300 LTMKERHCVPDNITFATMIQA 320
             M +    PD   ++ +IQ 
Sbjct: 387 NHMIDTGVPPDTAVYSCLIQG 407



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 131/310 (42%), Gaps = 37/310 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + ++++  G +P++  + +LV  Y   G + EA   ++ M+SV   +PD+YTY+ L+   
Sbjct: 456 VVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG-VEPDIYTYNTLVDGY 514

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R D    +  +M +  +  ++V+YN I+ G  +A++    +  F  M+ESG     
Sbjct: 515 CKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESG-MAVS 573

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I T  +++     +   ++      +   M VK DI                        
Sbjct: 574 IHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDI------------------------ 609

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
                      +T+NIVI    K G  ++ +E F  +   G+ P  +TY  +++   K  
Sbjct: 610 -----------LTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEE 658

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
                D++   +E S    D+   N II      G+V K G     + ++  +P+  T +
Sbjct: 659 SFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTS 718

Query: 316 TMIQAYNALG 325
            +I  ++  G
Sbjct: 719 LLIYLFSVNG 728



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 93/191 (48%), Gaps = 5/191 (2%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +F  M+  G+  S+  Y  ++    ++   DEA   +  + S+ + K D+ T++I+I
Sbjct: 558 AKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSM-NVKFDILTFNIVI 616

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
           ++  K  R    +++ A +S  G+  + +TY  +I    K + FE+ ++ FS+M E   C
Sbjct: 617 RAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSM-EKSSC 675

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PD   LN +I    N G + K   + ++ +  G+  +  T ++L   +   G Y   R 
Sbjct: 676 TPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKY---RE 732

Query: 193 VMDFMQKRFFF 203
            +  + +++ F
Sbjct: 733 YIKLLPEKYRF 743


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 158/339 (46%), Gaps = 11/339 (3%)

Query: 10  PEQASLLFEVML--SDGLKPSV---DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK-- 62
           P+ A  LF+ +L   D   P+    ++ +AL  A   +   D     +   K +  C   
Sbjct: 124 PDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVPALAVELFKRMDRCACP 183

Query: 63  ---PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P +YTY+ILI    +  R DL   +   +   G+     +YN +IDG+ K  + ++ 
Sbjct: 184 EAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKA 243

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M E  G  P++ T +S+I+    +  ++K E+   +    GV+ +  T N L  
Sbjct: 244 HDLFYKM-EEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIH 302

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y  +GM+ +   V   M      P V   N  +    K G I++  + F  M  +G KP
Sbjct: 303 GYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKP 362

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + I+Y +L+  Y+ AG I  +D++   +    V+ D   FN +I+AY + G ++K   +F
Sbjct: 363 DVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMF 422

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M ++   PD ITF+T+I A+  LG  + A    N MI
Sbjct: 423 EDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMI 461



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 143/313 (45%), Gaps = 2/313 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + ++P+    +F  +L  GL P V  Y AL+  + + G +D+A      M+      P+V
Sbjct: 201 RARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKMEE-QGIMPNV 259

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TYS LI    K    D  E++L +M   G+  + +TYN +I GY  +  ++E    F  
Sbjct: 260 VTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKE 319

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M  S    PD+   NS ++A    G I++    ++   L G K D+ +   L   Y  AG
Sbjct: 320 M-SSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAG 378

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
               M ++ + M      P    +N +I  + + G ++K    F+ M  +G+ P+ IT+ 
Sbjct: 379 CIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFS 438

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +++SA+ + G +         + ++ V  DT  ++C+I       D+ K  EL   M  +
Sbjct: 439 TVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSK 498

Query: 306 HCVPDNITFATMI 318
              P  I F T I
Sbjct: 499 GIPPPCIKFFTSI 511



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 158/331 (47%), Gaps = 9/331 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +++ L+FE M   G+ P +  ++ ++SA+ + G LD+A    N M   +   PD   YS 
Sbjct: 416 DKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMID-TGVPPDTAVYSC 474

Query: 71  LIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNT-IIDGYGKAKKFEEMESSFSAMV 127
           LI+   + +R DL++  +++++M   GI    + + T II+   K  +  E +     ++
Sbjct: 475 LIQG--QCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLII 532

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            +G   P++ T NS++  Y   GN+++     +    +GV+ DI T N L   Y + G  
Sbjct: 533 HTGQ-RPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRI 591

Query: 188 DKMRSVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           D   ++  D + KR    T V+YNI++    +A      +E F +M   GM  +  TY +
Sbjct: 592 DDALTLFRDMLHKRVTL-TSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYAT 650

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++    +     + + +L ++ + +V  D   FN +I A  + G  ++  ELF  +    
Sbjct: 651 VLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYG 710

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            VP  +T+  MI         E A NL + M
Sbjct: 711 LVPTILTYRVMITNLIKEESFEDADNLFSSM 741



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 145/321 (45%), Gaps = 23/321 (7%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           + +C  PE A             P++  Y  L++ Y ++   D        +   +   P
Sbjct: 177 MDRCACPEAA-------------PTIYTYNILINCYRRARRPDLGLPVFGRLLR-TGLGP 222

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV++Y+ LI   +K    D    +  +M   GI  + VTY+++I+G  K K+ ++ E   
Sbjct: 223 DVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVL 282

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV   G  P+  T N +I  Y  SG  ++  + + E +   +  D+   N    +  +
Sbjct: 283 RQMV-GAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCK 341

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   + R + D M  +   P V++Y  ++  +  AG I  M+  F  M   G+ P+   
Sbjct: 342 HGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHV 401

Query: 244 YCSLVSAYSKAGL----IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +L++AY++ G+    ++  + + +Q  N D+I     F+ +ISA+ + G ++   E F
Sbjct: 402 FNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIIT----FSTVISAFCRLGRLDDAMEKF 457

Query: 300 LTMKERHCVPDNITFATMIQA 320
             M +    PD   ++ +IQ 
Sbjct: 458 NHMIDTGVPPDTAVYSCLIQG 478



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 131/310 (42%), Gaps = 37/310 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + ++++  G +P++  + +LV  Y   G + EA   ++ M+SV   +PD+YTY+ L+   
Sbjct: 527 VVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG-VEPDIYTYNTLVDGY 585

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R D    +  +M +  +  ++V+YN I+ G  +A++    +  F  M+ESG     
Sbjct: 586 CKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAV-S 644

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I T  +++     +   ++      +   M VK DI                        
Sbjct: 645 IHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDI------------------------ 680

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
                      +T+NIVI    K G  ++ +E F  +   G+ P  +TY  +++   K  
Sbjct: 681 -----------LTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEE 729

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
                D++   +E S    D+   N II      G+V K G     + ++  +P+  T +
Sbjct: 730 SFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTS 789

Query: 316 TMIQAYNALG 325
            +I  ++  G
Sbjct: 790 LLIYLFSVNG 799



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 93/191 (48%), Gaps = 5/191 (2%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +F  M+  G+  S+  Y  ++    ++   DEA   +  + S+ + K D+ T++I+I
Sbjct: 629 AKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSM-NVKFDILTFNIVI 687

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
           ++  K  R    +++ A +S  G+  + +TY  +I    K + FE+ ++ FS+M E   C
Sbjct: 688 RAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSM-EKSSC 746

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PD   LN +I    N G + K   + ++ +  G+  +  T ++L   +   G Y   R 
Sbjct: 747 TPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKY---RE 803

Query: 193 VMDFMQKRFFF 203
            +  + +++ F
Sbjct: 804 YIKLLPEKYRF 814


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 162/335 (48%), Gaps = 8/335 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + + A +L+  M    ++ S+  +  +++   + G L +A   I  M+++   KP+V
Sbjct: 193 KLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLG-VKPNV 251

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ +I       +F     I   M   G+E    TYN+ I G  K  + EE       
Sbjct: 252 VTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICK 311

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY---G 182
           M+E GG  P+  T N++I  Y N G+++K   + +E    G+ A + T N+   +    G
Sbjct: 312 MLE-GGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEG 370

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G  D M   +  M+++   P  VT+NI+I  + + G  ++      +M  +G++P  +
Sbjct: 371 RMGDADNM---IKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLV 427

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+    K   + + D++  +++   ++ D   FN +I  +   G++++  +L   M
Sbjct: 428 TYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEM 487

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                +PD IT+ T++Q Y   G  E A+ L ++M
Sbjct: 488 DNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEM 522



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 149/316 (47%), Gaps = 2/316 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G+KP+V  Y  ++  +   G    A      MK     +PD YTY+  I    K  R + 
Sbjct: 246 GVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKD-KGLEPDCYTYNSFISGLCKEGRLEE 304

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              ++ +M   G+  +AVTYN +IDGY      ++  +    M+ S G    + T N  I
Sbjct: 305 ASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMI-SKGIMASLVTYNLFI 363

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A    G +   +    E    G+  D  T NIL   Y R G   +   ++D M  +   
Sbjct: 364 HALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQ 423

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT+VTY  +I   GK   +++ +  F K++  G+ P+ I + +L+  +   G I +   +
Sbjct: 424 PTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQL 483

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L++++N  V+ D   +N ++  Y + G VE+  +L   MK R   PD+I++ T+I  Y+ 
Sbjct: 484 LKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSK 543

Query: 324 LGMTEAAQNLENKMIA 339
            G  + A  + ++M+ 
Sbjct: 544 RGDMKDAFRVRDEMMT 559



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 144/325 (44%), Gaps = 37/325 (11%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS----- 57
           G CK+   E+AS L   ML  GL P+   Y AL+  Y   G LD+A++  ++M S     
Sbjct: 295 GLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMA 354

Query: 58  -----------------VSDCK------------PDVYTYSILIKSCTKFHRFDLIEKIL 88
                            + D              PD  T++ILI    +         +L
Sbjct: 355 SLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLL 414

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            EM   GI+ + VTY ++I   GK  + +E ++ FS  ++  G  PDI   N++I  +  
Sbjct: 415 DEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSK-IQQEGLLPDIIVFNALIDGHCA 473

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +GNI++  +   E + M V  D  T N L + Y R G  ++ R ++D M++R   P  ++
Sbjct: 474 NGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHIS 533

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +I  + K G ++       +M   G  P  +TY +L+    K       + +L+++ 
Sbjct: 534 YNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMV 593

Query: 269 NSDVILDTPFFNCIISAYGQAGDVE 293
           +  +  D   +  II A     D+E
Sbjct: 594 SKGITPDDSTYLSIIEAMETVDDLE 618



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 6/207 (2%)

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           ++T N MI+     G ++K +++      +GVK ++ T N +   +   G + + R +  
Sbjct: 216 LYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQ 275

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ +   P   TYN  I    K G +E+      KM   G+ PN++TY +L+  Y   G
Sbjct: 276 TMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKG 335

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAY---GQAGDVEKMGELFLTMKERHCVPDNI 312
            + K  +   ++ +  ++     +N  I A    G+ GD + M      M+E+  +PD +
Sbjct: 336 DLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNM---IKEMREKGMMPDAV 392

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           T   +I  Y   G  + A  L ++M+ 
Sbjct: 393 THNILINGYCRCGDAKRAFGLLDEMVG 419



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 6/173 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK  + ++A  LF  +  +GL P + V+ AL+  +  +G +D AF  + +M ++    
Sbjct: 435 VLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMK-VL 493

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY+ L++   +  + +   ++L EM   GI+   ++YNT+I GY K     +M+ +
Sbjct: 494 PDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRG---DMKDA 550

Query: 123 FSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
           F    E  + G  P I T N++I     +   E  E+   E    G+  D  T
Sbjct: 551 FRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDST 603



 Score = 45.4 bits (106), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 78/183 (42%), Gaps = 3/183 (1%)

Query: 159 YNEFNLMGVKADIQT---LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           ++E  L   + D +T    ++L ++Y      ++       ++++ F P + T N ++  
Sbjct: 131 FDELALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSL 190

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           F K    +     + +M    ++ +  T+  +++   K G + K    +  +E   V  +
Sbjct: 191 FLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPN 250

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N II  +   G  ++   +F TMK++   PD  T+ + I      G  E A  L  
Sbjct: 251 VVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLIC 310

Query: 336 KMI 338
           KM+
Sbjct: 311 KML 313


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 2/248 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ KQ    + L + M+ DG KP+   Y  L+ +YG++  L+EA +    M+  + C+P
Sbjct: 359 LGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQE-AGCEP 417

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY  LI    K    D+   +   M   G+     TY+ II+  GKA         F
Sbjct: 418 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLF 477

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV  G C P++ T N MI+ +  + N E   K Y +    G + D  T +I+ +  G 
Sbjct: 478 CEMVGQG-CTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGH 536

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  ++   V   MQ++ + P    Y ++++ +GKAG++EK  +++++M H G++PN  T
Sbjct: 537 CGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPT 596

Query: 244 YCSLVSAY 251
             SL+S +
Sbjct: 597 CNSLLSTF 604



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 135/279 (48%), Gaps = 1/279 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           K D +TY+ ++ +  +  +F  I ++L EM   G + + VTYN +I  YG+A    E  +
Sbjct: 346 KHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMN 405

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M E+G C PD  T  ++I  +  +G ++     Y      G+  D  T +++    
Sbjct: 406 VFKQMQEAG-CEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCL 464

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+AG       +   M  +   P +VT+NI+I    KA + E   + ++ M++ G +P+ 
Sbjct: 465 GKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDK 524

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  ++      G + + + +  +++  + + D P +  ++  +G+AG+VEK  + +  
Sbjct: 525 VTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQE 584

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           M      P+  T  +++  +  +     A NL   M+A+
Sbjct: 585 MLHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLAL 623



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 134/279 (48%), Gaps = 11/279 (3%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD-CKPDVYTYSILIKSCTKFHR 80
           G K     YT +V   G++    + F  IN +  + V D CKP+  TY+ LI S  + + 
Sbjct: 344 GFKHDGHTYTTMVGNLGRA----KQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANY 399

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            +    +  +M   G E   VTY T+ID + KA  F ++       +++ G  PD FT +
Sbjct: 400 LNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAG-FLDIAMDMYQRMQAAGLSPDTFTYS 458

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I+  G +G++    + + E    G   ++ T NI+   + +A  Y+    +   MQ  
Sbjct: 459 VIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNA 518

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
            F P  VTY+IV+E  G  G +E+ E  F +M+ +   P+   Y  LV  + KAG + K 
Sbjct: 519 GFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKA 578

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
               +++ ++ +  + P  N ++S + +   V +M E +
Sbjct: 579 WQWYQEMLHAGLRPNVPTCNSLLSTFLR---VHRMSEAY 614



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 111/244 (45%), Gaps = 1/244 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G +    TY T++   G+AK+F  +      MV+ G C P+  T N +I +YG +  + +
Sbjct: 344 GFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDG-CKPNTVTYNRLIHSYGRANYLNE 402

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G + D  T   L   + +AG  D    +   MQ     P   TY+++I 
Sbjct: 403 AMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIIN 462

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
             GKAGH+      F +M  +G  PN +T+  +++ ++KA        + R ++N+    
Sbjct: 463 CLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQP 522

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           D   ++ ++   G  G +E+   +F  M+ ++ VPD   +  ++  +   G  E A    
Sbjct: 523 DKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWY 582

Query: 335 NKMI 338
            +M+
Sbjct: 583 QEML 586



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 6/211 (2%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D +  N ++    N  N      W       G K D  T   +  + GRA  +  +  ++
Sbjct: 315 DAYQANQVLKQMDNYANALGFFYWLKR--QPGFKHDGHTYTTMVGNLGRAKQFGAINRLL 372

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M K    P  VTYN +I ++G+A ++ +    FK+M+  G +P+ +TYC+L+  ++KA
Sbjct: 373 DEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKA 432

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G +     + ++++ + +  DT  ++ II+  G+AG +     LF  M  + C P+ +TF
Sbjct: 433 GFLDIAMDMYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTF 492

Query: 315 ATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
             MI  +      E A  L   M    +N+G
Sbjct: 493 NIMIALHAKARNYETALKLYRDM----QNAG 519



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 94/198 (47%), Gaps = 2/198 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +++ M + GL P    Y+ +++  G++G L  A     +M     C P++ T++I+I   
Sbjct: 441 MYQRMQAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVG-QGCTPNLVTFNIMIALH 499

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K   ++   K+  +M   G +   VTY+ +++  G     EE E  F+ M       PD
Sbjct: 500 AKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWV-PD 558

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
                 ++  +G +GN+EK  +WY E    G++ ++ T N L  ++ R     +  +++ 
Sbjct: 559 EPVYGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQ 618

Query: 196 FMQKRFFFPTVVTYNIVI 213
            M      P++ TY +++
Sbjct: 619 SMLALGLHPSLQTYTLLL 636



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E+A  +F  M      P   VY  LV  +G++G +++A+    +M   + 
Sbjct: 531 MEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQEMLH-AG 589

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            +P+V T + L+ +  + HR      +L  M  LG+  S  TY  ++     A+   +M 
Sbjct: 590 LRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDMG 649

Query: 121 SSFSAMVESGGCHP 134
                M  SG  HP
Sbjct: 650 FCGQLMAVSG--HP 661


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 137/289 (47%), Gaps = 4/289 (1%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
            YT ++S  G    L  A   + +M+S   DC  +V+TYS L+  C K +  DL + +  
Sbjct: 2   TYTTMISQCGSHQQLRRALELVAEMRSRGIDC--NVHTYSALMNVCIKANELDLAQDVYK 59

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M   G   + VTYN +ID     +K  E      A+V SG    ++ T N++ISA   S
Sbjct: 60  QMLEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSG-IQAEVRTYNTVISACNKS 118

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G  E+  K Y +    GVK    T   L  +YG+ G  +K   +   M +R     V+TY
Sbjct: 119 GQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITY 178

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           + +I    KAG  E   E F KM     KPN +TY SL++A S  G   K   +  Q++ 
Sbjct: 179 SSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQT 238

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
                D+  +  +I+AY + G   +  + F  M+ + C PD   F +++
Sbjct: 239 QGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 130/265 (49%), Gaps = 1/265 (0%)

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YTY+ +I  C    +     +++AEM   GI+C+  TY+ +++   KA + +  +  +  
Sbjct: 1   YTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQ 60

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+E G C P++ T N +I    +     +  +        G++A+++T N +  +  ++G
Sbjct: 61  MLEEG-CSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSG 119

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             ++   V + M      P+  TY  +I  +GK G +EK  + F+ M  RG + N ITY 
Sbjct: 120 QPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYS 179

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           SL+SA  KAG       +  ++   +   +   +N +I+A    G  EK  ELF  M+ +
Sbjct: 180 SLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQ 239

Query: 306 HCVPDNITFATMIQAYNALGMTEAA 330
            C PD+IT+  +I AY   G    A
Sbjct: 240 GCKPDSITYCGLITAYERGGQWRRA 264



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 2/172 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  QPEQA  ++E ML+ G+KPS   YTAL+SAYG+ G +++A     DM     C+ +V
Sbjct: 117 KSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIR-RGCERNV 175

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TYS LI +C K  R+++  ++ ++M     + + VTYN++I        +E+    F  
Sbjct: 176 ITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQ 235

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           M ++ GC PD  T   +I+AY   G   +  K + +    G   D    N L
Sbjct: 236 M-QTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSL 286



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 2/192 (1%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
            ++  G++  V  Y  ++SA  +SG  ++A      M + +  KP   TY+ LI +  K 
Sbjct: 95  ALVRSGIQAEVRTYNTVISACNKSGQPEQALKVYEKMLA-AGVKPSATTYTALISAYGKK 153

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
            + +    I  +M   G E + +TY+++I    KA ++E     FS M +   C P++ T
Sbjct: 154 GQVEKALDIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKE-NCKPNVVT 212

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
            NS+I+A  + G+ EK  + + +    G K D  T   L  +Y R G + +     + MQ
Sbjct: 213 YNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQ 272

Query: 199 KRFFFPTVVTYN 210
            +   P    +N
Sbjct: 273 SQGCHPDAAVFN 284



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 3/159 (1%)

Query: 183 RAGMYDKMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           + G + ++R  ++    M+ R     V TY+ ++    KA  ++  ++ +K+M   G  P
Sbjct: 9   QCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSP 68

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N +TY  L+   +      +   +   +  S +  +   +N +ISA  ++G  E+  +++
Sbjct: 69  NLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQPEQALKVY 128

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M      P   T+  +I AY   G  E A ++   MI
Sbjct: 129 EKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMI 167


>gi|255661208|gb|ACU25773.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 156/342 (45%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   GI+   V YN++I+ +GKAK F E  S  S M E+G            
Sbjct: 62  KAISIFSRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG     ++ +K +     +G++
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M +RG++PN+ITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS + +  G  PD+   NSMI+ +G +    +     +E    GV  D  + + L   Y 
Sbjct: 67  FSRL-KRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+    ++ ++ F  M+  G++PN +
Sbjct: 126 ENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  D+  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             R   P+ IT++T+I  +  +G  + A  L  K+
Sbjct: 246 HNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 155/352 (44%), Gaps = 39/352 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+KP +  Y ++++ +G++ L  EA S I++M+  +   PD  +YS L+   
Sbjct: 66  IFSRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMRE-AGVVPDTVSYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F +M    G  P+
Sbjct: 125 VENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSM-RKVGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  M  R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +I  + +      + E+F  M+      D+   + ++ AY  L   + A ++
Sbjct: 361 MIDLFSKYKKYPNVVEVFEKMRGLGYFSDSNVISLVLNAYGKLHEFDKANDM 412



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 61/124 (49%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++R   P   TY+ +I  FGK G  +    + +KM+   +  + + Y +L+    K    
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            K  SI  +++ + +  D   +N +I+ +G+A    +   L   M+E   VPD ++++T+
Sbjct: 61  SKAISIFSRLKRAGIKPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTL 120

Query: 318 IQAY 321
           +  Y
Sbjct: 121 LTMY 124



 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 6/157 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  + ++A++LF+ + S G++    +Y  ++ AY ++GL+  A   ++++K     +
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYERAGLVAHAKRLLHELK-----R 317

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD       I       R +    +  +    G       +  +ID + K KK+  +   
Sbjct: 318 PDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIDLFSKYKKYPNVVEV 377

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
           F  M    G   D   ++ +++AYG     +K    Y
Sbjct: 378 FEKM-RGLGYFSDSNVISLVLNAYGKLHEFDKANDMY 413


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 156/340 (45%), Gaps = 4/340 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G CK  + + A  +FE   +    P V  Y+ L++   ++G LDEA      M+  S
Sbjct: 153 LMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENS 212

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C+PDV T++ L+    K  R    +++L  M       + +TY+++IDG  K  +  + 
Sbjct: 213 -CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDA 271

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +  F  M+  G   P++ T NS+I  +  +  ++       E    G   DI T N L  
Sbjct: 272 QEVFKRMIVRG-IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLID 330

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G   +   +   M+ +F  P V+TY+ +I  F K   I+     F  M  + + P
Sbjct: 331 GLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLP 390

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +T+ +LV  Y  AGL+   + +L ++  SD   D   +  ++  + + G + +   + 
Sbjct: 391 DVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVL 450

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             M +R C P+ +T+  +I A+   G    A  L  +M+ 
Sbjct: 451 KRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVG 490



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 159/336 (47%), Gaps = 4/336 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  +A LL + M   GL P+V  Y+ ++  + +   +D A+     M   + C 
Sbjct: 51  GFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE-NGCM 109

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++ TY+ L+    +    D   ++L EM   G++    +Y+T++ G  K  K +     
Sbjct: 110 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 169

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F     +G C PD+   +++I+    +G +++  K + +      + D+ T   L     
Sbjct: 170 FEDN-SNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLC 228

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +     + + V++ M+ R   P V+TY+ +I+   K G +   +E FK+M  RG++PN +
Sbjct: 229 KGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVV 288

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+  +     +     ++ ++  +  + D   +N +I    + G   +   LF  M
Sbjct: 289 TYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDM 348

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           K + C PD IT++ +I  +  L   + A+ L + M+
Sbjct: 349 KAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDML 384



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 160/340 (47%), Gaps = 8/340 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + ++A  LFE M  +  +P V  +TAL+    +   L EA   +  M+   
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED-R 246

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +C P+V TYS LI    K  +    +++   M   GIE + VTYN++I G+        +
Sbjct: 247 NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNG---V 303

Query: 120 ESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +S+   M E  + GC PDI T N++I     +G   +  + + +        D+ T + L
Sbjct: 304 DSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCL 363

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              + +    D  R++ D M K+   P VVT++ ++E +  AG ++  E   ++M     
Sbjct: 364 IGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDC 423

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P+  TY SLV  + K G +++   +L+++       +   +  +I A+ +AG      +
Sbjct: 424 SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYK 483

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           L   M      P+ IT+ ++I  +   G  E A+ +  ++
Sbjct: 484 LLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERL 523



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 149/319 (46%), Gaps = 5/319 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  Q   A  +F+ M+  G++P+V  Y +L+  +  +  +D A   + +M + + C 
Sbjct: 261 GLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM-TATGCL 319

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+ TY+ LI    K  R     ++  +M         +TY+ +I G+ K ++ +   + 
Sbjct: 320 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 379

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M++     PD+ T ++++  Y N+G ++  E+   E        D+ T   L   + 
Sbjct: 380 FDDMLKQA-VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFC 438

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   + R V+  M KR   P VVTY  +I+ F +AG      +  ++M   G++PN I
Sbjct: 439 KVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVI 498

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           TY SL+  +   G + +   +L ++E + +   D   +  ++    + G +    EL   
Sbjct: 499 TYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEA 558

Query: 302 MKERHCVPDNITFATMIQA 320
           +K+    P +  +  +I+ 
Sbjct: 559 IKQSGTPPRHDIYVALIRG 577



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 146/312 (46%), Gaps = 2/312 (0%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           +V  +T ++    ++  L EA +    MK      P+ +TY++LI    K H+      +
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTV-PNEWTYNVLINGFCKVHKVHRAYLL 64

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
           L EM   G+  + VTY+T+I G+ +  K +     F  MVE+ GC P++ T N+++S   
Sbjct: 65  LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN-GCMPNLVTYNTLLSGLC 123

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            +G +++  +  +E    G++ D  + + L     + G  D    V +        P VV
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVV 183

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            Y+ +I    K G +++  + F+KM+    +P+ +T+ +L+    K   + +   +L  +
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETM 243

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           E+ +   +   ++ +I    + G V    E+F  M  R   P+ +T+ ++I  +      
Sbjct: 244 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGV 303

Query: 328 EAAQNLENKMIA 339
           ++A  L  +M A
Sbjct: 304 DSALLLMEEMTA 315



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 128/279 (45%), Gaps = 1/279 (0%)

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +C+ +V T++I+I    K +R        A+M   G   +  TYN +I+G+ K  K    
Sbjct: 2   ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRA 61

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 M ES G  P++ T +++I  +     ++   K + +    G   ++ T N L  
Sbjct: 62  YLLLKEMKES-GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 120

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              R G+ D+   ++D M++R   P   +Y+ ++    K G I+   + F+   +    P
Sbjct: 121 GLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPP 180

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + + Y +L++   K G + +   +  ++  +    D   F  ++    +   +++  ++ 
Sbjct: 181 DVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVL 240

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            TM++R+C P+ IT++++I      G    AQ +  +MI
Sbjct: 241 ETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMI 279



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/213 (21%), Positives = 95/213 (44%), Gaps = 3/213 (1%)

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C  ++ T   MI     +  + +   ++ +    G   +  T N+L   + +     +  
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++  M++    P VVTY+ VI  F +   ++   + F++M   G  PN +TY +L+S  
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + GL+ +   +L ++    +  D   ++ +++   + G ++   ++F       C PD 
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 182

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           + ++T+I      G  + A  L  K   M+ENS
Sbjct: 183 VAYSTLIAGLCKTGRLDEACKLFEK---MRENS 212



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 76/166 (45%)

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
           M  + ++ T  I+     +A    +  +    M+K+   P   TYN++I  F K   + +
Sbjct: 1   MECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHR 60

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
                K+MK  G+ PN +TY +++  + +   +     + RQ+  +  + +   +N ++S
Sbjct: 61  AYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLS 120

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              + G +++  EL   M+ER   PD  ++ T++      G  + A
Sbjct: 121 GLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMA 166



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 65/154 (42%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P  A  L E M+ +G++P+V  Y +L+  +  +G L+EA   +  ++   +CK D++ Y
Sbjct: 477 KPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAY 536

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
            +++    +  R     ++L  +   G       Y  +I G  + K+  +       M  
Sbjct: 537 RVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTL 596

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           S    P+     ++I      G  E+     +E 
Sbjct: 597 SRKSRPNAEAYEAVIQELAREGRHEEANALADEL 630


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 163/340 (47%), Gaps = 5/340 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +LGK  Q   A  +F +     +  +V VY A++  Y ++G  ++    ++ M+    
Sbjct: 183 LAVLGKANQEALAVEIF-IRAESTVDNTVQVYNAMMGVYARTGRFNKVQGMLDLMRE-RG 240

Query: 61  CKPDVYTYSILIKSCTKFHRF--DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           C+PD+ +++ LI +  K      ++  ++L E+   G+    +TYNT+I    +    EE
Sbjct: 241 CEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRRSGLRPDIITYNTLISACSRESNLEE 300

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  M E+  C PD++T N+MIS YG  G   K E+ + E    G   D  T N L 
Sbjct: 301 AVKVFDDM-EAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLL 359

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            ++ R G  DK++ + + M +  F    +TYN +I  +GK G      + ++ MK  G  
Sbjct: 360 YAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRT 419

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++ITY  L+ +  KA  +++  +++ ++ N  V      ++ +I  Y +AG   +  E 
Sbjct: 420 PDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEET 479

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  M+     PD + ++ M+  +        A  L  +M+
Sbjct: 480 FDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLYREMV 519



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 158/332 (47%), Gaps = 7/332 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLL--DEAFSTINDMKSVSDCKPDVYTYSILIK 73
           + ++M   G +P +  +  L++A  ++G +  + A   +N+++  S  +PD+ TY+ LI 
Sbjct: 232 MLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRR-SGLRPDIITYNTLIS 290

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
           +C++    +   K+  +M     +    TYN +I  YG+     + E  F  + ES G  
Sbjct: 291 ACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKEL-ESKGYF 349

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           PD  T NS++ A+   GN++K+++  NE   MG   D  T N +   YG+ G +     +
Sbjct: 350 PDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQL 409

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
              M+     P  +TY ++I++ GKA  + +      +M + G+KP   TY +L+  Y++
Sbjct: 410 YRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYAR 469

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           AG  ++ +     +  S +  D   ++ ++  + +  +  K   L+  M      PD   
Sbjct: 470 AGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLYREMVRDGITPDPTV 529

Query: 314 FATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           +  M++    LG     ++++  +  M+E  G
Sbjct: 530 YGAMLR---NLGRENKVEDIQRIIRDMEEVCG 558



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 3/290 (1%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 74
           LL EV  S GL+P +  Y  L+SA  +   L+EA    +DM++   C+PD++TY+ +I  
Sbjct: 269 LLNEVRRS-GLRPDIITYNTLISACSRESNLEEAVKVFDDMEA-HYCQPDLWTYNAMISV 326

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             +       E++  E+   G    AVTYN+++  + +    ++++   + MV+ G    
Sbjct: 327 YGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIR- 385

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D  T N++I  YG  G      + Y +  L G   D  T  +L  S G+A    +  +VM
Sbjct: 386 DEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVM 445

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             M      PT+ TY+ +I  + +AG   + EE F  M+  G++P+ + Y  ++  + + 
Sbjct: 446 SEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRF 505

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
               K   + R++    +  D   +  ++   G+   VE +  +   M+E
Sbjct: 506 DEATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEE 555



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 8/314 (2%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            EQA  +F  M+ DG  P+VD    L+ A    G L+E +    +   + D    +   SI
Sbjct: 787  EQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQE---IQDMGFQISKSSI 843

Query: 71   LIKSCTKFHRFDLI---EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
            L+     F R   I   +KI   M   G   +   Y  +I    K K+  ++E+  + M 
Sbjct: 844  LL-ILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEM- 901

Query: 128  ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            E  G  PD+   NSM+  Y    +  K  + Y      G++ D  T N L   Y R    
Sbjct: 902  EEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRP 961

Query: 188  DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            ++  S+M  M++    P + TY  +I  FGK   +   EE F+++  +G K +   Y  +
Sbjct: 962  EEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIM 1021

Query: 248  VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
            +  Y  +G   K + +L  ++++ V       + ++ +YG +G  ++  ++   +KE   
Sbjct: 1022 MKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGL 1081

Query: 308  VPDNITFATMIQAY 321
                + ++++I AY
Sbjct: 1082 SLSTLPYSSVIDAY 1095



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 131/303 (43%), Gaps = 2/303 (0%)

Query: 31   VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
            V+ AL+ AY  SG  ++A +  N M       P V + + L+++     R + +  +  E
Sbjct: 772  VWNALIQAYAASGCYEQARAVFNTMMR-DGPSPTVDSINGLLQALIVDGRLEELYVVTQE 830

Query: 91   MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
            +  +G + S  +   I+D + +     E +  +  M ++ G  P +     MI       
Sbjct: 831  IQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGM-KAAGYFPTMHLYRIMIGLLCKGK 889

Query: 151  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
             +  +E    E    G + D+   N + + Y     + K   +   +++    P   TYN
Sbjct: 890  RVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYN 949

Query: 211  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             +I  + +    E+      +M+  G++P   TY SL++A+ K  L++  + +  ++ + 
Sbjct: 950  TLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSK 1009

Query: 271  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
               LD  F++ ++  Y  +G+  K  +L   MK+    P   T   ++ +Y + G  + A
Sbjct: 1010 GSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEA 1069

Query: 331  QNL 333
            + +
Sbjct: 1070 EKV 1072



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 150/339 (44%), Gaps = 10/339 (2%)

Query: 7    CKQPE---QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            C++ E   +AS +F  M  +G+KPS  +Y ++V  Y + G  + A   I D+  +     
Sbjct: 674  CEENEFTAEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLI-DLAEIEGMPF 732

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV---TYNTIIDGYGKAKKFEEME 120
            D    SI +     + +  L +K  + +  L   C+ V    +N +I  Y  +  +E+  
Sbjct: 733  D--KISIDVAVIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYEQAR 790

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            + F+ M+  G   P + ++N ++ A    G +E++     E   MG +    ++ ++  +
Sbjct: 791  AVFNTMMRDGPS-PTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDA 849

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            + R     + + +   M+   +FPT+  Y I+I    K   +  +E    +M+  G +P+
Sbjct: 850  FARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPD 909

Query: 241  SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
               + S++  Y+      K   I ++++   +  D   +N +I  Y +    E+   L  
Sbjct: 910  LSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMH 969

Query: 301  TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             M+     P   T+ ++I A+    +   A+ L  ++++
Sbjct: 970  EMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLS 1008



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 92/176 (52%), Gaps = 2/176 (1%)

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK-- 224
           V   +Q  N +   Y R G ++K++ ++D M++R   P +V++N +I    KAG +    
Sbjct: 206 VDNTVQVYNAMMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNV 265

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
             E   +++  G++P+ ITY +L+SA S+   + +   +   +E      D   +N +IS
Sbjct: 266 AIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMIS 325

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            YG+ G   K  +LF  ++ +   PD +T+ +++ A+   G  +  + + N+M+ M
Sbjct: 326 VYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQM 381



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 150/370 (40%), Gaps = 39/370 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  +  +A+ +   ML+ G+KP++  Y+AL+  Y ++G   EA  T + M+  S  +P
Sbjct: 432 LGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRR-SGIRP 490

Query: 64  DVYTYSILIKSCTKFHRFDLIEKIL---AEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           D   YS+++     F RFD   K +    EM   GI      Y  ++   G+  K E+++
Sbjct: 491 DQLAYSVMLDV---FLRFDEATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQ 547

Query: 121 SSFSAMVE--------------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
                M E               G C+ D   +  +  +  +  + E +    + ++  G
Sbjct: 548 RIIRDMEEVCGMNPQAIASILVKGECYEDAAGMLRLAISGSDEIDSENLLSILSSYSSSG 607

Query: 167 VKAD-IQTLNILTKSYGRAGMYDKMRSVMDFMQKR----------------FFFPTVVTY 209
            +A+ +  L  L     ++       S++   + +                +F  +   Y
Sbjct: 608 RQAEALDLLQFLKGHVSKSNQLVAEASIVTLCKAKQLDAALKEYNDTREFDWFTGSCTMY 667

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
             +I+   +     +  + F  M+  G+KP+   Y S+V  Y K G       ++   E 
Sbjct: 668 ESLIQCCEENEFTAEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLIDLAEI 727

Query: 270 SDVILDTPFFN-CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
             +  D    +  +I  YG+    +K   L   +++R    D   +  +IQAY A G  E
Sbjct: 728 EGMPFDKISIDVAVIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYE 787

Query: 329 AAQNLENKMI 338
            A+ + N M+
Sbjct: 788 QARAVFNTMM 797



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 2/146 (1%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            +VM  +  +PE+   L   M   GL+P +D Y +L++A+G+  L+ +A     ++ S   
Sbjct: 952  IVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLS-KG 1010

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             K D   Y I++K           EK+L+ M   G+E +  T + ++  YG + + +E E
Sbjct: 1011 SKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSGQPQEAE 1070

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAY 146
               + + E  G        +S+I AY
Sbjct: 1071 KVLTNLKEM-GLSLSTLPYSSVIDAY 1095


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 173/341 (50%), Gaps = 4/341 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           ++++G C+    ++A+ + E+M  + + P    Y  ++S + + G + EA     +M+++
Sbjct: 272 ILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENL 331

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PDV TY+ LI  C +    +   K++ EM   G++ ++VTYN ++  + K  K +E
Sbjct: 332 K-LSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDE 390

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           ++ +   M ESG C PDI T N++IS +   G +++  +  +E    G+K D  TLN + 
Sbjct: 391 VDKTVRKMEESG-CLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTML 449

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           ++  R    D+   ++   ++R +F   V+Y  +I  + K     +    + +MK + + 
Sbjct: 450 RALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEII 509

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ ITY S+++   + G   +    L ++  S ++ D   +N II  Y Q G VEK  + 
Sbjct: 510 PSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQF 569

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              M E++  PD +T  T++      GM E A  L N  I+
Sbjct: 570 HNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWIS 610



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 5/317 (1%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSA---YGQSGLLDEAFSTINDMKSVSDCKP 63
           C +P QA+ +F  M   G++P++     L++A   +  S  +  + +   D   +   K 
Sbjct: 137 CGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIG-VKI 195

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  +++ILI      +RF    ++L +M   G     +TYNTI+DG  K  +  E     
Sbjct: 196 NTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLL 255

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ++ G  P+  T N ++      G +++        +   V  D  T N++   + +
Sbjct: 256 LDM-KNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCK 314

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   +   + + M+     P VVTYN +I    + G  E+  +  ++M+ RGMKPNS+T
Sbjct: 315 QGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVT 374

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +V  + K G + +VD  +R++E S  + D   +N +IS + + G +++   L   M 
Sbjct: 375 YNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMG 434

Query: 304 ERHCVPDNITFATMIQA 320
            +    D++T  TM++A
Sbjct: 435 RKGLKMDDVTLNTMLRA 451



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 147/315 (46%), Gaps = 8/315 (2%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF---HRFD 82
           KP +D+    + AY   G   +A    N MK +   +P + T + L+ +  +F   H   
Sbjct: 124 KPLLDIS---IGAYVACGRPHQAAQIFNRMKRLG-MQPTLLTCNTLLNALVRFPSSHSIR 179

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
           L + +  +   +G++ +  ++N +I G     +F E       M + G C PD  T N++
Sbjct: 180 LSKAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYG-CPPDNITYNTI 238

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           +      G + +      +    G+  +  T NIL     R G   +  +V++ M +   
Sbjct: 239 LDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSV 298

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P   TYN++I  F K G I +     ++M++  + P+ +TY +L++   + G   +   
Sbjct: 299 VPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFK 358

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           ++ ++E   +  ++  +N ++  + + G ++++ +    M+E  C+PD +T+ T+I  + 
Sbjct: 359 LIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHC 418

Query: 323 ALGMTEAAQNLENKM 337
            +G  + A  L ++M
Sbjct: 419 KVGKMDEAFRLMDEM 433



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 148/340 (43%), Gaps = 3/340 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+   L E M   G+KP+   Y  +V  + + G +DE   T+  M+  S C PD+ TY+ 
Sbjct: 354 EEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEE-SGCLPDIVTYNT 412

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  + D   +++ EM   G++   VT NT++    + +K +E      +     
Sbjct: 413 LISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCS-ARRR 471

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G   D  +  ++I  Y       +  + ++E     +   I T N +     + G  ++ 
Sbjct: 472 GYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQA 531

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              +D + +    P  +TYN +I  + + G +EK  ++  KM  +  KP+ +T  +L+  
Sbjct: 532 IDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCG 591

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K G++ K   +     +    +D   +N II +  +     +  +L   M+E+   PD
Sbjct: 592 LCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPD 651

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 350
             T+  ++      G  + A+   +K IA K  S  + ++
Sbjct: 652 CYTYNAILGGLTDAGRMKDAEEFISK-IAEKGKSENQFLE 690



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 17/213 (7%)

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR----SVM 194
           L+  I AY   G   +  + +N    +G++  + T N L  +  R      +R       
Sbjct: 127 LDISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFT 186

Query: 195 DFMQKRFFFPTVVTYNIVIE------TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           DF++      T  ++NI+I        FG+A  +        KM+  G  P++ITY +++
Sbjct: 187 DFIKIGVKINTN-SFNILIHGSCMENRFGEAIRV------LGKMRDYGCPPDNITYNTIL 239

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               K G + +   +L  ++N  +  +   FN ++    + G +++   +   M +   V
Sbjct: 240 DGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVV 299

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           PD  T+  MI  +   G    A  L  +M  +K
Sbjct: 300 PDAWTYNVMISGFCKQGRIAEAMRLREEMENLK 332



 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 11/135 (8%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C+  Q E+A      M+    KP V     L+    + G+L++A    N   S  
Sbjct: 553 IIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKG 612

Query: 60  DCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
               D  +Y+ +I S  K  R    FDL+E++  E   LG +C   TYN I+ G   A +
Sbjct: 613 K-DVDAVSYNTIILSLCKEKRFGEAFDLLEEM--EEKKLGPDC--YTYNAILGGLTDAGR 667

Query: 116 FEEMESSFSAMVESG 130
            ++ E   S + E G
Sbjct: 668 MKDAEEFISKIAEKG 682


>gi|255661192|gb|ACU25765.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 426

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 155/342 (45%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN++I+ +GKAK F E  S  + M  +G            
Sbjct: 62  KAISIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     +G++
Sbjct: 122 TMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ NS V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI   T I    A G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAAAGRJEEA 339



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 169/354 (47%), Gaps = 43/354 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y ++++ +G++ L  EA S IN+M++ +   PD  +Y+ L+   
Sbjct: 66  IFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRT-AGVMPDTVSYTTLLTMH 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  RF     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKIGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K+++ G++ + + Y +++ AY 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYE 300

Query: 253 KAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ-------------AGDVEKMG-- 296
           +AGL+     +L +++  D I  DT     I++A G+             AG+V+ +   
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDTAIH--ILAAAGRJEEATWVFRQAIDAGEVKDITVF 358

Query: 297 -----------------ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                            E+F  M+ER   PD+   A ++ AY  L   E A ++
Sbjct: 359 ERLIHLFSKYKKYXNVVEVFDKMRERRYFPDSNVIALVLNAYGKLHEFEKANSV 412



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 5/289 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   NSMI+ +G +    +     NE    GV  D  +   L   + 
Sbjct: 67  FSRLKRSGFA-PDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
           + R   P++IT++T+I  +  +G  + A  L  K+     NSG ++ Q 
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL----RNSGVEIDQV 290



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 104/263 (39%), Gaps = 33/263 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 160 GQLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 218

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K +     F 
Sbjct: 219 VVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 278

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-------------------- 164
            +  SG    D     +MI AY  +G +   ++  +E                       
Sbjct: 279 KLRNSG-VEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAAAGRJE 337

Query: 165 -----------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                       G   DI     L   + +   Y  +  V D M++R +FP      +V+
Sbjct: 338 EATWVFRQAIDAGEVKDITVFERLIHLFSKYKKYXNVVEVFDKMRERRYFPDSNVIALVL 397

Query: 214 ETFGKAGHIEKMEEYFKKMKHRG 236
             +GK    EK    + +M+  G
Sbjct: 398 NAYGKLHEFEKANSVYMEMQDEG 420



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 35/169 (20%)

Query: 200 RFFFPTVVTYNIVIETFGKAG-------HIEKMEE------------------------- 227
           R   P   TY+ +I  FGK G        ++KME+                         
Sbjct: 3   RALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSK 62

Query: 228 ---YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
               F ++K  G  P+ + Y S+++ + KA L  +  S++ ++  + V+ DT  +  +++
Sbjct: 63  AISIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLT 122

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            + +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 123 MHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 50/105 (47%)

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           + R + P+  TY +L++ + K GL     S L+++E   V  D   ++ +I    +  D 
Sbjct: 1   RGRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            K   +F  +K     PD + + +MI  +    +   A++L N+M
Sbjct: 61  SKAISIFSRLKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEM 105


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 160/327 (48%), Gaps = 36/327 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  +   A  +FE   S G   +V  ++AL+SAYG+SGL +EA S  N MK     +P
Sbjct: 243 LGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG-LRP 301

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY+ +I +C K                 G+E   V           AK F+EM+ + 
Sbjct: 302 NLVTYNAVIDACGKG----------------GMEFKQV-----------AKFFDEMQRNC 334

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
                     PD  T NS+++     G  E     ++E +   ++ D+ + N L  +  +
Sbjct: 335 --------VQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICK 386

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D    ++  M  +   P VV+Y+ VI+ F KAG  ++    F +M++  +  + ++
Sbjct: 387 GGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVS 446

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+S Y+K G   +   ILR++ +  +  D   +N ++  YG+ G  +++ ++F  MK
Sbjct: 447 YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMK 506

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAA 330
             H +P+ +T++T+I  Y+  G+ + A
Sbjct: 507 REHVLPNLLTYSTLIDGYSKGGLYKEA 533



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 153/287 (53%), Gaps = 2/287 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +Q +  F+ M  + ++P    + +L++   + GL + A +  ++M S    + DV++Y+ 
Sbjct: 321 KQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEM-SNRRIEQDVFSYNT 379

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  K  + DL  +ILA+M    I  + V+Y+T+IDG+ KA +F+E  + F  M    
Sbjct: 380 LLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEM-RYL 438

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
               D  + N+++S Y   G  E+      E   +G+K D+ T N L   YG+ G YD++
Sbjct: 439 NIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + V   M++    P ++TY+ +I+ + K G  ++  E F++ K  G++ + + Y +L+ A
Sbjct: 499 KKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDA 558

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
             K GL+    S++ ++    +  +   +N II A+G++  +E+  +
Sbjct: 559 LCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSAD 605



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 134/301 (44%), Gaps = 61/301 (20%)

Query: 12  QASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q  L FE+   M +  + P+V  Y+ ++  + ++G  DEA +   +M+ + +   D  +Y
Sbjct: 389 QMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL-NIALDRVSY 447

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + L+   TK  R +    IL EM+ +GI+   VTYN ++ GYGK  K++E++  F+ M  
Sbjct: 448 NTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKR 507

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                P++ T +++I  Y   G  ++  + + EF   G++AD+   + L  +  + G+  
Sbjct: 508 EH-VLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVG 566

Query: 189 KMRSVMDFMQKRFFFPTVVTYNI------------------------------------- 211
              S++D M K    P VVTYN                                      
Sbjct: 567 SAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSADYSNGGSLPFSSSALSELTETE 626

Query: 212 ---VIETFGKAGH----------IEKMEEY------FKKMKHRGMKPNSITYCSLVSAYS 252
              VI+ FG+              E M+E       F+KM    +KPN +T+ ++++A S
Sbjct: 627 GNRVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACS 686

Query: 253 K 253
           +
Sbjct: 687 R 687



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 105/199 (52%), Gaps = 1/199 (0%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           ++MIS  G  G +   ++ +      G    +   + L  +YGR+G++++  SV + M++
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296

Query: 200 RFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
               P +VTYN VI+  GK G   +++ ++F +M+   ++P+ IT+ SL++  S+ GL  
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWE 356

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
              ++  ++ N  +  D   +N ++ A  + G ++   E+   M  +  +P+ ++++T+I
Sbjct: 357 AARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVI 416

Query: 319 QAYNALGMTEAAQNLENKM 337
             +   G  + A NL  +M
Sbjct: 417 DGFAKAGRFDEALNLFGEM 435


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 163/335 (48%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ E        M   G+ P V  Y  L++AY + GLL+EAF  ++ M S    KP
Sbjct: 107 LCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM-SGKGLKP 165

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V+TY+ +I    K  ++   + +L EM  +G+     TYN ++    +     + E  F
Sbjct: 166 CVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIF 225

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  S G  PD+ + +++I     +G +++  K++ +    G+  D     IL   + R
Sbjct: 226 DEM-PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCR 284

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G+  +   V D M ++     VVTYN ++    K   + + +E F +M  RG+ P+  T
Sbjct: 285 NGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYT 344

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +L++ YSK G + K  ++   +   ++  D   +N +I  + +  ++EK+ EL+  M 
Sbjct: 345 FTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMI 404

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            R   P++I++  +I  Y  +G    A  L ++M+
Sbjct: 405 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMV 439



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 160/319 (50%), Gaps = 2/319 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L K    +QA   F  M + GL P   +YT L+  + ++G++ EA    ++M     C 
Sbjct: 246 LLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLE-QGCV 304

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            DV TY+ ++    K       +++  EM+  G+     T+ T+I+GY K     +  + 
Sbjct: 305 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 364

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M++     PD+ T N++I  +     +EK+ + +N+     +  +  +  IL   Y 
Sbjct: 365 FEMMIQRN-LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYC 423

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G   +   + D M ++ F  T++T N +++ + +AG+  K +E+   M  +G+ P+ I
Sbjct: 424 NMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGI 483

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L++ + K   + +  +++ ++ENS ++ D   +N I++ + + G +++   + L M
Sbjct: 484 TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKM 543

Query: 303 KERHCVPDNITFATMIQAY 321
            ER   PD  T+ ++I  +
Sbjct: 544 IERGVNPDRSTYTSLINGH 562



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 160/361 (44%), Gaps = 39/361 (10%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F V+ S GL  S++   +L+    + G +D A+    ++   S  + +VYT +I+I +  
Sbjct: 50  FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVR-SGVQVNVYTLNIMINALC 108

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K  + +  +  L++M   G+    VTYNT+I+ Y +    EE      +M    G  P +
Sbjct: 109 KNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM-SGKGLKPCV 167

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-GMYDKMRSVMD 195
           FT N++I+    +G   + +   +E   +G+  D  T NIL     R   M D  R + D
Sbjct: 168 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER-IFD 226

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M  +   P +V+++ +I    K G +++  +YF+ MK+ G+ P+++ Y  L+  + + G
Sbjct: 227 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNG 286

Query: 256 -----------------------------------LIMKVDSILRQVENSDVILDTPFFN 280
                                              ++ + D +  ++    V  D   F 
Sbjct: 287 VMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFT 346

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +I+ Y + G++ K   LF  M +R+  PD +T+ T+I  +      E    L N MI+ 
Sbjct: 347 TLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISR 406

Query: 341 K 341
           +
Sbjct: 407 R 407



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 126/280 (45%), Gaps = 1/280 (0%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            +C  +   + +L+++  +  +     +    +   G+  S    N+++ G  K    + 
Sbjct: 21  GNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDL 80

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               +  +V SG    +++TLN MI+A   +  IE  + + ++    GV  D+ T N L 
Sbjct: 81  AWEIYQEVVRSG-VQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 139

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y R G+ ++   +MD M  +   P V TYN +I    K G   + +    +M   GM 
Sbjct: 140 NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 199

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++ TY  L+    +   +M  + I  ++ +  V+ D   F+ +I    + G +++  + 
Sbjct: 200 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 259

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  MK     PDN+ +  +I  +   G+   A  + ++M+
Sbjct: 260 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEML 299



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML  G+ P    Y  L++ + +   +D AF+ +N M++ S   PDV TY++++   ++  
Sbjct: 473 MLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMEN-SGLLPDVITYNVILNGFSRQG 531

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           R    E I+ +M   G+     TY ++I+G+      +E       M++ G    D F
Sbjct: 532 RMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDKF 589


>gi|255661188|gb|ACU25763.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 426

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 155/341 (45%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 57
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 58  --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTM 123

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     PDNI   T I      G  E A
Sbjct: 303 GLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 339



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 155/343 (45%), Gaps = 39/343 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVMPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---TLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM  K  +Q   T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + + Y +++ AY 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 253 KAGLIMKVDSILRQVENSDVIL-------------------------------DTPFFNC 281
           +AGL+     +L ++++ D I                                D   F  
Sbjct: 301 RAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           +I  + +      + E+F  M+     PD+   A ++ AY  L
Sbjct: 361 MIHLFSKYKKYANLIEVFDKMRGLGYFPDSNVIALVLNAYGKL 403



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 131/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  +++ +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIVQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  + ++A++LF+ + S G++    +Y  ++ AY ++GL+  A   ++++KS     
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKS----- 317

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD       I       R +    +  +    G       +  +I  + K KK+  +   
Sbjct: 318 PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLFSKYKKYANLIEV 377

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           F  M    G  PD   +  +++AYG     +K    Y E   +G
Sbjct: 378 FDKM-RGLGYFPDSNVIALVLNAYGKLHEFDKANGVYMEMQEVG 420


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 156/340 (45%), Gaps = 4/340 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G CK  + + A  +FE   +    P V  Y+ L++   ++G LDEA      M+  S
Sbjct: 272 LMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENS 331

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C+PDV T++ L+    K  R    +++L  M       + +TY+++IDG  K  +  + 
Sbjct: 332 -CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDA 390

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +  F  M+   G  P++ T NS+I  +  +  ++       E    G   DI T N L  
Sbjct: 391 QEVFKRMIVR-GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLID 449

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G   +   +   M+ +F  P V+TY+ +I  F K   I+     F  M  + + P
Sbjct: 450 GLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLP 509

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +T+ +LV  Y  AGL+   + +L ++  SD   D   +  ++  + + G + +   + 
Sbjct: 510 DVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVL 569

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             M +R C P+ +T+  +I A+   G    A  L  +M+ 
Sbjct: 570 KRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVG 609



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 159/336 (47%), Gaps = 4/336 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  +A LL + M   GL P+V  Y+ ++  + +   +D A+     M   + C 
Sbjct: 170 GFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE-NGCM 228

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++ TY+ L+    +    D   ++L EM   G++    +Y+T++ G  K  K +     
Sbjct: 229 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 288

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F     +G C PD+   +++I+    +G +++  K + +      + D+ T   L     
Sbjct: 289 FEDN-SNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLC 347

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +     + + V++ M+ R   P V+TY+ +I+   K G +   +E FK+M  RG++PN +
Sbjct: 348 KGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVV 407

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+  +     +     ++ ++  +  + D   +N +I    + G   +   LF  M
Sbjct: 408 TYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDM 467

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           K + C PD IT++ +I  +  L   + A+ L + M+
Sbjct: 468 KAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDML 503



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 159/340 (46%), Gaps = 8/340 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + ++A  LFE M  +  +P V  +TAL+    +   L EA   +  M+   
Sbjct: 307 LIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED-R 365

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +C P+V TYS LI    K  +    +++   M   GIE + VTYN++I G+        +
Sbjct: 366 NCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNG---V 422

Query: 120 ESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +S+   M E  + GC PDI T N++I     +G   +  + + +        D+ T + L
Sbjct: 423 DSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCL 482

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              + +    D  R++ D M K+   P VVT++ ++E +  AG ++  E   ++M     
Sbjct: 483 IGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDC 542

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P+  TY SLV  + K G +++   +L+++       +   +  +I A+ +AG       
Sbjct: 543 SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYR 602

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           L   M      P+ IT+ ++I  +   G  E A+ +  ++
Sbjct: 603 LLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERL 642



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 161/344 (46%), Gaps = 12/344 (3%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C+Q   + A  LF  M+ +G  P++  Y  L+S   ++GL+DEA+  +++M+   
Sbjct: 202 VIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRE-R 260

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +PD ++Y  L+    K  + D+  K+  + S        V Y+T+I G  KA + +E 
Sbjct: 261 GLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEA 320

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M E+  C PD+ T  +++        +++ ++            ++ T + L  
Sbjct: 321 CKLFEKMRENS-CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLID 379

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G     + V   M  R   P VVTYN +I  F     ++      ++M   G  P
Sbjct: 380 GLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLP 439

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVE----NSDVILDTPFFNCIISAYGQAGDVEKM 295
           + ITY +L+    K G   + + +   ++    N DVI     ++C+I  + +   ++  
Sbjct: 440 DIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT----YSCLIGGFCKLERIDMA 495

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             LF  M ++  +PD +TF+T+++ Y   G+ + A+ L  +M+A
Sbjct: 496 RTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVA 539



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 148/319 (46%), Gaps = 5/319 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  Q   A  +F+ M+  G++P+V  Y +L+  +  +  +D A   + +M + + C 
Sbjct: 380 GLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEM-TATGCL 438

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+ TY+ LI    K  R     ++  +M         +TY+ +I G+ K ++ +   + 
Sbjct: 439 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 498

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M++     PD+ T ++++  Y N+G ++  E+   E        D+ T   L   + 
Sbjct: 499 FDDMLKQA-VLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFC 557

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   + R V+  M KR   P VVTY  +I+ F +AG         ++M   G++PN I
Sbjct: 558 KVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVI 617

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           TY SL+  +   G + +   IL ++E + +   D   +  ++    + G +    EL   
Sbjct: 618 TYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEA 677

Query: 302 MKERHCVPDNITFATMIQA 320
           +K+    P +  +  +I+ 
Sbjct: 678 IKQSGTPPRHDIYVALIRG 696



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 142/312 (45%), Gaps = 6/312 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G+ P+V  Y  ++    +SG LD+A   + +M+  S   PD   Y+ +I +  K      
Sbjct: 54  GITPNVFTYAVVIQGLCKSGDLDKACELLEEMRE-SGPVPDAAIYNFVIHALCKARN--- 109

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             K L     +  E + +T+  +IDG  KA +  E  + F+ M + G   P+ +T N +I
Sbjct: 110 TAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTV-PNEWTYNVLI 168

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           + +     + +      E    G+  ++ T + +   + R    D    +   M +    
Sbjct: 169 NGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCM 228

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P +VTYN ++    + G +++  E   +M+ RG++P+  +Y +L++   K G I     +
Sbjct: 229 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 288

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY-N 322
                N D   D   ++ +I+   +AG +++  +LF  M+E  C PD +TF  ++     
Sbjct: 289 FEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 348

Query: 323 ALGMTEAAQNLE 334
              + EA Q LE
Sbjct: 349 GDRLQEAQQVLE 360



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 146/336 (43%), Gaps = 2/336 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +  +A+  F  M   G  P+   Y  L++ + +   +  A+  + +MK  S   P
Sbjct: 136 LCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKE-SGLAP 194

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TYS +I    +  + D   K+  +M   G   + VTYNT++ G  +    +E     
Sbjct: 195 NVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELL 254

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E G   PD F+ +++++    +G I+   K + + +      D+   + L     +
Sbjct: 255 DEMRERG-LQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCK 313

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  D+   + + M++    P VVT+  +++   K   +++ ++  + M+ R   PN IT
Sbjct: 314 AGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVIT 373

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL+    K G +     + +++    +  +   +N +I  +     V+    L   M 
Sbjct: 374 YSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMT 433

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              C+PD IT+ T+I      G    A  L   M A
Sbjct: 434 ATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKA 469



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 139/321 (43%), Gaps = 8/321 (2%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G   +V  Y  L  A  ++  +DE    + +        P+V+TY+++I+   K    D 
Sbjct: 19  GFDHNVYTYNRLFEALLRARRIDETCHILKN-GWPPGITPNVFTYAVVIQGLCKSGDLDK 77

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             ++L EM   G    A  YN +I    KA+   +    F +M     C  ++ T   MI
Sbjct: 78  ACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM----ECEKNVITWTIMI 133

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                +  + +   ++ +    G   +  T N+L   + +     +   ++  M++    
Sbjct: 134 DGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLA 193

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVTY+ VI  F +   ++   + F++M   G  PN +TY +L+S   + GL+ +   +
Sbjct: 194 PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 253

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L ++    +  D   ++ +++   + G ++   ++F       C PD + ++T+I     
Sbjct: 254 LDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCK 313

Query: 324 LGMTEAAQNLENKMIAMKENS 344
            G  + A  L  K   M+ENS
Sbjct: 314 AGRLDEACKLFEK---MRENS 331



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 2/161 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P  A  L E M+ +G++P+V  Y +L+  +  +G L+EA   +  ++   +CK D++ Y
Sbjct: 596 KPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAY 655

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
            +++    +  R     ++L  +   G       Y  +I G  + K+  +       M  
Sbjct: 656 RVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTL 715

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           S    P+     ++I      G  E+     +E  L+G K 
Sbjct: 716 SRKSRPNAEAYEAVIQELAREGRHEEANALADE--LLGNKG 754


>gi|356540087|ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 158/359 (44%), Gaps = 39/359 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------- 57
           + KQ   A  LF+ M   GL P    Y+ L++ +G+ GL D +   +  M+         
Sbjct: 156 RAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFWLQQMEQDNVSGDLV 215

Query: 58  --------------------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
                                      S   PD+  Y+ +I    K   F     +L EM
Sbjct: 216 LYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEM 275

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
               ++   V+Y+T++  Y   +KF E  S FS M E+  C  D+ T N MI  YG    
Sbjct: 276 RDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAK-CPLDLTTCNIMIDVYGQLHM 334

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            ++ ++ +     MG++ ++ + N L + YG A ++ +   +   MQ +     VVTYN 
Sbjct: 335 PKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNT 394

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I  +GK    EK     ++M  RG++PN+ITY +++S + KAG + +   + +++ +S 
Sbjct: 395 MINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSG 454

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           V +D   +  +I AY + G V     L   +K     PDNI   T I      G  E A
Sbjct: 455 VRIDEVLYQTMIVAYERTGLVAHAKRLLHELKR----PDNIPRDTAIAILARAGRIEEA 509



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 157/335 (46%), Gaps = 6/335 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A LL + M  + ++P    Y+ L++ Y  +    EA S  ++M   + C 
Sbjct: 258 VFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNE-AKCP 316

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    + H     +++   M  +GI+ + ++YNT++  YG+A  F E    
Sbjct: 317 LDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHL 376

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +S     ++ T N+MI+ YG +   EK      E N  G++ +  T + +   + 
Sbjct: 377 FRLM-QSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWE 435

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG  D+   +   ++        V Y  +I  + + G +     + K++ H   +P++I
Sbjct: 436 KAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERTGLVA----HAKRLLHELKRPDNI 491

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
              + ++  ++AG I +   + RQ  ++  + D   F C+I+ + +      + E+F  M
Sbjct: 492 PRDTAIAILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYANVVEVFEKM 551

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +E    PD+   A ++ A+  L   + A  L  +M
Sbjct: 552 REVGYFPDSDVIALVLNAFGKLREFDKADALYRQM 586



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 137/320 (42%), Gaps = 22/320 (6%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+   P++A  LF  M   G++P+V  Y  L+  YG++ L  EA      M+S  D + +
Sbjct: 330 GQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQS-KDVQQN 388

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ +I    K    +    ++ EM+  GIE +A+TY+TII  + KA K +     F 
Sbjct: 389 VVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQ 448

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +  S G   D     +MI AY  +G +   ++  +E      + D    +       RA
Sbjct: 449 KL-RSSGVRIDEVLYQTMIVAYERTGLVAHAKRLLHELK----RPDNIPRDTAIAILARA 503

Query: 185 GMYDK----MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           G  ++     R   D  + +     +  +  +I  F K      + E F+KM+  G  P+
Sbjct: 504 GRIEEATWVFRQAFDAREVK----DISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPD 559

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF- 299
           S     +++A+ K     K D++ RQ+     +        ++S YG   D   +  LF 
Sbjct: 560 SDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMVESLFE 619

Query: 300 -------LTMKERHCVPDNI 312
                  +  KE H V  +I
Sbjct: 620 KLDSNPNINKKELHLVVASI 639



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 161/371 (43%), Gaps = 38/371 (10%)

Query: 2   VMLGKCKQPEQASLLFEVMLS-DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           V+L    Q +    L+ VM   +G + S+    +L+S   +      A + ++ +   + 
Sbjct: 83  VLLAAIGQTQNEDELYAVMSPYNGRQLSMRFMVSLLS---REPDWQRALALLDWINDKAL 139

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-------- 112
            +P ++ Y++L+++  +  ++ L   +  EM   G+     TY+T+I  +GK        
Sbjct: 140 YRPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSL 199

Query: 113 ------------------------AKKFEEMESSFS--AMVESGGCHPDIFTLNSMISAY 146
                                   A+K  +   + S  + +++    PD+   NSMI+ +
Sbjct: 200 FWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVF 259

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           G +    +      E     V+ D  + + L   Y     + +  S+   M +      +
Sbjct: 260 GKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDL 319

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            T NI+I+ +G+    ++ +  F  M+  G++PN I+Y +L+  Y +A L  +   + R 
Sbjct: 320 TTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRL 379

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +++ DV  +   +N +I+ YG+  + EK   L   M +R   P+ IT++T+I  +   G 
Sbjct: 380 MQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGK 439

Query: 327 TEAAQNLENKM 337
            + A  L  K+
Sbjct: 440 LDRAAILFQKL 450


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 134/264 (50%), Gaps = 2/264 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ KQ    + L + M+ DG +P+   Y  L+ +YG++  L+EA +  N M+  + CKP
Sbjct: 374 LGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQE-AGCKP 432

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY  LI    K    D+   +   M   G+     TY+ II+  GKA         F
Sbjct: 433 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 492

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+  GC P++ T N M+  +  + N +   K Y +    G + D  T +I+ +  G 
Sbjct: 493 CEMVDQ-GCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGH 551

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  ++  +V   MQ++ + P    Y ++++ +GKAG++EK  ++++ M H G++PN  T
Sbjct: 552 CGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT 611

Query: 244 YCSLVSAYSKAGLIMKVDSILRQV 267
             SL+S + +   I +   +L+ +
Sbjct: 612 CNSLLSTFLRVNKIAEAYELLQNM 635



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 137/279 (49%), Gaps = 1/279 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           K D +TY+ ++ +  +  +F  I K+L EM   G + + VTYN +I  YG+A    E  +
Sbjct: 361 KHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMN 420

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F+ M E+G C PD  T  ++I  +  +G ++     Y      G+  D  T +++    
Sbjct: 421 VFNQMQEAG-CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL 479

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+AG       +   M  +   P +VTYNI+++   KA + +   + ++ M++ G +P+ 
Sbjct: 480 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 539

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  ++      G + + +++  +++  + I D P +  ++  +G+AG+VEK  + +  
Sbjct: 540 VTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 599

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           M      P+  T  +++  +  +     A  L   M+A+
Sbjct: 600 MLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLAL 638



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 134/282 (47%), Gaps = 8/282 (2%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD-CKPDVYTYSILIKSCTKFHR 80
           G K     YT +V   G++    + F  IN +  + V D C+P+  TY+ LI S  + + 
Sbjct: 359 GFKHDGHTYTTMVGNLGRA----KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANY 414

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            +    +  +M   G +   VTY T+ID + KA  F ++       +++GG  PD FT +
Sbjct: 415 LNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG-FLDIAMDMYQRMQAGGLSPDTFTYS 473

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I+  G +G++    K + E    G   ++ T NI+   + +A  Y     +   MQ  
Sbjct: 474 VIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNA 533

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
            F P  VTY+IV+E  G  G++E+ E  F +M+ +   P+   Y  LV  + KAG + K 
Sbjct: 534 GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 593

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
               + + ++ +  + P  N ++S + +   + +  EL   M
Sbjct: 594 WQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 1/244 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G +    TY T++   G+AK+F  +      MV  G C P+  T N +I +YG +  + +
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNE 417

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               +N+    G K D  T   L   + +AG  D    +   MQ     P   TY+++I 
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
             GKAGH+    + F +M  +G  PN +TY  ++  ++KA        + R ++N+    
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           D   ++ ++   G  G +E+   +F  M++++ +PD   +  ++  +   G  E A    
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 335 NKMI 338
             M+
Sbjct: 598 QAML 601



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 115/263 (43%), Gaps = 9/263 (3%)

Query: 78  FHRFDLIEKILAEMSYLGIECSAVTYNTII---DGYGKAKKFEEMESSFSAMVESGGCHP 134
             RF         +  LG+   A   N ++   + YG A  F      F  +    G   
Sbjct: 309 LRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGF------FYWLKRQPGFKH 362

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D  T  +M+   G +     + K  +E    G + +  T N L  SYGRA   ++  +V 
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 422

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + MQ+    P  VTY  +I+   KAG ++   + +++M+  G+ P++ TY  +++   KA
Sbjct: 423 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 482

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G +     +  ++ +     +   +N ++  + +A + +   +L+  M+     PD +T+
Sbjct: 483 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 542

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
           + +++     G  E A+ +  +M
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEM 565



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 120/296 (40%), Gaps = 29/296 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E+A  +F  M      P   VY  LV  +G++G +++A+     M   + 
Sbjct: 546 MEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLH-AG 604

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII----DGYGKAKKF 116
            +P+V T + L+ +  + ++     ++L  M  LG+  S  TY  ++    DG  K    
Sbjct: 605 LRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSK---- 660

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 173
             ++  F   + +   HP    L  M +A  +  N+       N  +LM     ++    
Sbjct: 661 --LDMGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRNHAN--NFLDLMHSEDRESKRGL 716

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT----------VVTYNIVIETFGKAGHIE 223
           ++ +     ++G  ++  SV +   ++  FP           ++  +++ E         
Sbjct: 717 VDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSR 776

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
            +  + K+M   G  P+ I    +V+ + +   +     + + VE    I  +PFF
Sbjct: 777 TLAWFRKQMLASGTCPSRI---DIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFF 829



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%)

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           +  G K +  TY ++V    +A     ++ +L ++       +T  +N +I +YG+A  +
Sbjct: 356 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +   +F  M+E  C PD +T+ T+I  +   G  + A ++  +M A
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQA 462


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 153/307 (49%), Gaps = 2/307 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           AS L   M+   + P+V  ++AL+ A+ + G L EA    ++M   S   PD++TYS LI
Sbjct: 293 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLI 351

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                  R D  + +   M       + VTYNT+I G+ KAK+ EE    F  M + G  
Sbjct: 352 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 411

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
              + T N++I     +G+ +  +K + +    GV  DI T +IL     + G  +K   
Sbjct: 412 GNTV-TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 470

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V +++QK    P + TYNI+IE   KAG +E   + F  +  +G+KPN I Y +++S + 
Sbjct: 471 VFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC 530

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           + GL  + D++ R+++    + ++  +N +I A  + GD     EL   M+    V D  
Sbjct: 531 RKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDAS 590

Query: 313 TFATMIQ 319
           T + +I 
Sbjct: 591 TISMVIN 597



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 155/325 (47%), Gaps = 2/325 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +  +A  L + M++ G +P +  Y  +V+   + G +D A S +  M+     + DV  Y
Sbjct: 184 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIY 242

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I +   +   +    +  EM   GI  + VTYN++I       ++ +     S M+E
Sbjct: 243 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 302

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
               +P++ T +++I A+   G + + EK Y+E     +  DI T + L   +      D
Sbjct: 303 RK-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 361

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           + + + + M  +  FP VVTYN +I+ F KA  +E+  E F++M  RG+  N++TY +L+
Sbjct: 362 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 421

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               +AG       I +++ +  V  D   ++ ++    + G +EK   +F  +++    
Sbjct: 422 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 481

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
           PD  T+  MI+     G  E   +L
Sbjct: 482 PDIYTYNIMIEGMCKAGKVEDGWDL 506



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 167/341 (48%), Gaps = 10/341 (2%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK+ +   A  L + M    ++  V +YT ++ A      +++A +   +M +  
Sbjct: 210 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN-K 268

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +P+V TY+ LI+    + R+    ++L++M    I  + VT++ +ID + K  K  E 
Sbjct: 269 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 328

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQTLNI 176
           E  +  M++     PDIFT +S+I+ +      +++++  + F LM  K    ++ T N 
Sbjct: 329 EKLYDEMIKRS-IDPDIFTYSSLINGFCMH---DRLDEAKHMFELMISKDCFPNVVTYNT 384

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L K + +A   ++   +   M +R      VTYN +I+   +AG  +  ++ FKKM   G
Sbjct: 385 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 444

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + P+ ITY  L+    K G + K   +   ++ S +  D   +N +I    +AG VE   
Sbjct: 445 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 504

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +LF ++  +   P+ I + TMI  +   G+ E A  L  +M
Sbjct: 505 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 545



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 148/320 (46%), Gaps = 2/320 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+  G +P +   ++L++ Y     + EA + ++ M  V + +P+  T++ LI      +
Sbjct: 125 MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM-FVMEYQPNTVTFNTLIHGLFLHN 183

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +      ++  M   G +    TY T+++G  K    +   S    M E G    D+   
Sbjct: 184 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIY 242

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            ++I A  N  N+      + E +  G++ ++ T N L +     G +     ++  M +
Sbjct: 243 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 302

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R   P VVT++ +I+ F K G + + E+ + +M  R + P+  TY SL++ +     + +
Sbjct: 303 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 362

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +   + + D   +   +N +I  + +A  VE+  ELF  M +R  V + +T+ T+IQ
Sbjct: 363 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 422

Query: 320 AYNALGMTEAAQNLENKMIA 339
                G  + AQ +  KM++
Sbjct: 423 GLFQAGDCDMAQKIFKKMVS 442



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 2/244 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ M+   + P +  Y++L++ +     LDEA      M S  DC P+V TY+ L
Sbjct: 327 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS-KDCFPNVVTYNTL 385

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           IK   K  R +   ++  EMS  G+  + VTYNT+I G  +A   +  +  F  MV S G
Sbjct: 386 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV-SDG 444

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PDI T + ++      G +EK    +       ++ DI T NI+ +   +AG  +   
Sbjct: 445 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 504

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +   +  +   P V+ Y  +I  F + G  E+ +  F++MK  G  PNS TY +L+ A 
Sbjct: 505 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRAR 564

Query: 252 SKAG 255
            + G
Sbjct: 565 LRDG 568



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 69/167 (41%)

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           I   N L  +  +   +D + S+ + MQ       + +YNI+I  F +   +        
Sbjct: 64  IVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLG 123

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           KM   G +P+ +T  SL++ Y     I +  +++ Q+   +   +T  FN +I       
Sbjct: 124 KMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHN 183

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              +   L   M  R C PD  T+ T++      G  + A +L  KM
Sbjct: 184 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 230


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 152/323 (47%), Gaps = 6/323 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L E M S G  P    +T +++A   +G LD A   +  M     C P+V TY+ LI + 
Sbjct: 134 LLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM----GCDPNVVTYTALIAAF 189

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  + +   K+L EM   G   + VTYN ++D   K       +     M+E GG  P+
Sbjct: 190 ARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE-GGFAPN 248

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T NS++  +   GN++   K        G++ ++ T + L     ++  + + + V++
Sbjct: 249 VMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLE 308

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ R   P   TY+ +I    KA  IE+ E+  ++M   G  P+ + Y S++ A+ K+G
Sbjct: 309 EMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSG 368

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER-HCVPDNITF 314
            +++    L+++       D   +N +I    + G + +   +   M+E    +PD +T+
Sbjct: 369 KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTY 428

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
           +T+I       M   AQ L ++M
Sbjct: 429 STVINGLCKSDMLVEAQKLLDRM 451



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 165/338 (48%), Gaps = 7/338 (2%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   + A  L  +M++ G++P+V  Y+AL+    +S    EA   + +MK+     
Sbjct: 258 GFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKT-RGVT 316

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD +TYS LI    K  + +  E++L  M+  G     V Y++II  + K+ K  E + +
Sbjct: 317 PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKT 376

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSY 181
              M +     PD+ T N++I      G I + +    +    G V  D+ T + +    
Sbjct: 377 LQEMRKQRK-SPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGL 435

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            ++ M  + + ++D M K    P VVTY  +I+   K G +E+ E   + MK  G  PN 
Sbjct: 436 CKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNV 495

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L+S   KA  + + + ++ ++ N+    +   +N +++    +G +++  +L   
Sbjct: 496 VTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQR 555

Query: 302 MKE--RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           MK+    C PD  T+ T++ A  +  + + A+ L  +M
Sbjct: 556 MKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 159/335 (47%), Gaps = 5/335 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L +CK+  +A  LF   L    +P V  Y  ++S +  +G L  A   + +MKS +   
Sbjct: 86  VLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKS-AGFA 144

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD +T++ +I +       D     +  +  +G + + VTY  +I  + +AKK EE    
Sbjct: 145 PDAFTHTPIITAMANAGDLD---GAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKL 201

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E G C P++ T N ++ A      +   +    +    G   ++ T N L   + 
Sbjct: 202 LEEMRERG-CPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFC 260

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D  R ++  M  +   P VVTY+ +I+   K+    + +E  ++MK RG+ P++ 
Sbjct: 261 KRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAF 320

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+    KA  I + + +LR++  S    D   ++ II A+ ++G + +  +    M
Sbjct: 321 TYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM 380

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +++   PD +T+ T+I     LG    AQ +  +M
Sbjct: 381 RKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQM 415



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 6/153 (3%)

Query: 189 KMRSVMDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           K R   D  +        P V +YNIVI  F  AG +    E  ++MK  G  P++ T+ 
Sbjct: 92  KHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHT 151

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            +++A + AG    +D  +  + +     +   +  +I+A+ +A  +E+  +L   M+ER
Sbjct: 152 PIITAMANAG---DLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRER 208

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            C P+ +T+  ++ A   L M  AAQ++  KMI
Sbjct: 209 GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMI 241



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 10/136 (7%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L KC + E+A  L + M   G  P+V  YT L+S   ++  +DEA   + +M++ + C P
Sbjct: 470 LCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRN-AGCPP 528

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKA-------K 114
           ++ TY+ ++       R    ++++  M     ECS  A TY TI++    +       +
Sbjct: 529 NLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQ 588

Query: 115 KFEEMESSFSAMVESG 130
             E+M+S+ S+  E G
Sbjct: 589 LLEQMKSTTSSQQEQG 604


>gi|255661210|gb|ACU25774.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 426

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 155/342 (45%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   GI    V YN++I+ +GKAK F E  S  S M E+G            
Sbjct: 62  KAISIFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG     ++ +K +     +G++
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M +RG++PN+ITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 155/352 (44%), Gaps = 39/352 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P +  Y ++++ +G++ L  EA S I++M+  +   PD  +YS L+   
Sbjct: 66  IFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMRE-AGVVPDTVSYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F +M    G  P+
Sbjct: 125 VENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSM-RKVGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  M  R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMHNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +I  + +      + E+F  M+     PD+   + ++ AY  L   + A ++
Sbjct: 361 MIDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVISLVLNAYGKLHEFDXANDM 412



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 127/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS + +  G  PD+   NSMI+ +G +    +     +E    GV  D  + + L   Y 
Sbjct: 67  FSRL-KRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+    ++ ++ F  M+  G++PN +
Sbjct: 126 ENQKFLEALSVFAEMREIKCLVDLTTCNIMIDVYGQLDMAKEADKLFWSMRKVGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  D+  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             R   P+ IT++T+I  +  +G  + A  L  K+
Sbjct: 246 HNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 61/124 (49%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++R   P   TY+ +I  FGK G  +    + +KM+   +  + + Y +L+    K    
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            K  SI  +++ + +  D   +N +I+ +G+A    +   L   M+E   VPD ++++T+
Sbjct: 61  SKAISIFSRLKRAGITPDLVAYNSMINVFGKAKLFREARSLISEMREAGVVPDTVSYSTL 120

Query: 318 IQAY 321
           +  Y
Sbjct: 121 LTMY 124


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 134/264 (50%), Gaps = 2/264 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ KQ    + L + M+ DG +P+   Y  L+ +YG++  L+EA +  N M+  + CKP
Sbjct: 374 LGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQE-AGCKP 432

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY  LI    K    D+   +   M   G+     TY+ II+  GKA         F
Sbjct: 433 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 492

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+  GC P++ T N M+  +  + N +   K Y +    G + D  T +I+ +  G 
Sbjct: 493 CEMVDQ-GCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGH 551

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  ++  +V   MQ++ + P    Y ++++ +GKAG++EK  ++++ M H G++PN  T
Sbjct: 552 CGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT 611

Query: 244 YCSLVSAYSKAGLIMKVDSILRQV 267
             SL+S + +   I +   +L+ +
Sbjct: 612 CNSLLSTFLRVNKIAEAYELLQNM 635



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 137/279 (49%), Gaps = 1/279 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           K D +TY+ ++ +  +  +F  I K+L EM   G + + VTYN +I  YG+A    E  +
Sbjct: 361 KHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMN 420

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F+ M E+G C PD  T  ++I  +  +G ++     Y      G+  D  T +++    
Sbjct: 421 VFNQMQEAG-CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL 479

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+AG       +   M  +   P +VTYNI+++   KA + +   + ++ M++ G +P+ 
Sbjct: 480 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 539

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  ++      G + + +++  +++  + I D P +  ++  +G+AG+VEK  + +  
Sbjct: 540 VTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 599

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           M      P+  T  +++  +  +     A  L   M+A+
Sbjct: 600 MLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLAL 638



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 134/282 (47%), Gaps = 8/282 (2%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD-CKPDVYTYSILIKSCTKFHR 80
           G K     YT +V   G++    + F  IN +  + V D C+P+  TY+ LI S  + + 
Sbjct: 359 GFKHDGHTYTTMVGNLGRA----KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANY 414

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            +    +  +M   G +   VTY T+ID + KA  F ++       +++GG  PD FT +
Sbjct: 415 LNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG-FLDIAMDMYQRMQAGGLSPDTFTYS 473

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I+  G +G++    K + E    G   ++ T NI+   + +A  Y     +   MQ  
Sbjct: 474 VIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNA 533

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
            F P  VTY+IV+E  G  G++E+ E  F +M+ +   P+   Y  LV  + KAG + K 
Sbjct: 534 GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 593

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
               + + ++ +  + P  N ++S + +   + +  EL   M
Sbjct: 594 WQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 1/244 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G +    TY T++   G+AK+F  +      MV  G C P+  T N +I +YG +  + +
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNE 417

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               +N+    G K D  T   L   + +AG  D    +   MQ     P   TY+++I 
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
             GKAGH+    + F +M  +G  PN +TY  ++  ++KA        + R ++N+    
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           D   ++ ++   G  G +E+   +F  M++++ +PD   +  ++  +   G  E A    
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 335 NKMI 338
             M+
Sbjct: 598 QAML 601



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 115/263 (43%), Gaps = 9/263 (3%)

Query: 78  FHRFDLIEKILAEMSYLGIECSAVTYNTII---DGYGKAKKFEEMESSFSAMVESGGCHP 134
             RF         +  LG+   A   N ++   + YG A  F      F  +    G   
Sbjct: 309 LRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGF------FYWLKRQPGFKH 362

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D  T  +M+   G +     + K  +E    G + +  T N L  SYGRA   ++  +V 
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 422

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + MQ+    P  VTY  +I+   KAG ++   + +++M+  G+ P++ TY  +++   KA
Sbjct: 423 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 482

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G +     +  ++ +     +   +N ++  + +A + +   +L+  M+     PD +T+
Sbjct: 483 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 542

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
           + +++     G  E A+ +  +M
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEM 565



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 120/296 (40%), Gaps = 29/296 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E+A  +F  M      P   VY  LV  +G++G +++A+     M   + 
Sbjct: 546 MEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLH-AG 604

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII----DGYGKAKKF 116
            +P+V T + L+ +  + ++     ++L  M  LG+  S  TY  ++    DG  K    
Sbjct: 605 LRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSK---- 660

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 173
             ++  F   + +   HP    L  M +A  +  N+       N  +LM     ++    
Sbjct: 661 --LDMGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRNHAN--NFLDLMHSEDRESKRGL 716

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT----------VVTYNIVIETFGKAGHIE 223
           ++ +     ++G  ++  SV +   ++  FP           ++  +++ E         
Sbjct: 717 VDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSR 776

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
            +  + K+M   G  P+ I    +V+ + +   +     + + VE    I  +PFF
Sbjct: 777 TLAWFRKQMLASGTCPSRI---DIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFF 829



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%)

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           +  G K +  TY ++V    +A     ++ +L ++       +T  +N +I +YG+A  +
Sbjct: 356 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +   +F  M+E  C PD +T+ T+I  +   G  + A ++  +M A
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQA 462


>gi|255661212|gb|ACU25775.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 426

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 154/342 (45%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
           GL P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K + + 
Sbjct: 4   GLSPXRYTYSTLITHFGKEGLFDDALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLYDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   GI    V YN++I+ +GKAK F E  S  S M   G            
Sbjct: 62  KAISIFSRLKRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG     ++ +K +     MG++
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M  RG++PN+ITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMHSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 155/352 (44%), Gaps = 39/352 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P +  Y ++++ +G++ L  EA S I++M+ V    PD  +YS L+   
Sbjct: 66  IFSRLKRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVG-VVPDTVSYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F +M    G  P+
Sbjct: 125 VENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  M  R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMHSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDHVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++  + +      + E+F  M+     PD+   A ++ AY  L   + A ++
Sbjct: 361 MVDLFSKYKKYPNVVEVFEKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDV 412



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 128/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PXRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   NSMI+ +G +    +     +E  ++GV  D  + + L   Y 
Sbjct: 67  FSRLKRSGIV-PDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+    ++ ++ F  M+  G++PN +
Sbjct: 126 ENQKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             R   P+ IT++T+I  +  +G  + A  L  K+
Sbjct: 246 HSRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 61/124 (49%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++R   P   TY+ +I  FGK G  +    + +KM+   +  + + Y +L+    K    
Sbjct: 1   RERGLSPXRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDY 60

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            K  SI  +++ S ++ D   +N +I+ +G+A    +   L   M+    VPD ++++T+
Sbjct: 61  SKAISIFSRLKRSGIVPDLVAYNSMINVFGKAKLFREARSLISEMRMVGVVPDTVSYSTL 120

Query: 318 IQAY 321
           +  Y
Sbjct: 121 LTMY 124



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 51/105 (48%)

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           + RG+ P   TY +L++ + K GL     S L+++E   V  D   ++ +I    +  D 
Sbjct: 1   RERGLSPXRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLYDY 60

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            K   +F  +K    VPD + + +MI  +    +   A++L ++M
Sbjct: 61  SKAISIFSRLKRSGIVPDLVAYNSMINVFGKAKLFREARSLISEM 105


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 134/264 (50%), Gaps = 2/264 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ KQ    + L + M+ DG +P+   Y  L+ +YG++  L+EA +  N M+  + CKP
Sbjct: 491 LGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQE-AGCKP 549

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY  LI    K    D+   +   M   G+     TY+ II+  GKA         F
Sbjct: 550 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 609

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+  GC P++ T N M+  +  + N +   K Y +    G + D  T +I+ +  G 
Sbjct: 610 CEMVDQ-GCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGH 668

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  ++  +V   MQ++ + P    Y ++++ +GKAG++EK  ++++ M H G++PN  T
Sbjct: 669 CGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT 728

Query: 244 YCSLVSAYSKAGLIMKVDSILRQV 267
             SL+S + +   I +   +L+ +
Sbjct: 729 CNSLLSTFLRVNKIAEAYELLQNM 752



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 137/279 (49%), Gaps = 1/279 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           K D +TY+ ++ +  +  +F  I K+L EM   G + + VTYN +I  YG+A    E  +
Sbjct: 478 KHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMN 537

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F+ M E+G C PD  T  ++I  +  +G ++     Y      G+  D  T +++    
Sbjct: 538 VFNQMQEAG-CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL 596

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+AG       +   M  +   P +VTYNI+++   KA + +   + ++ M++ G +P+ 
Sbjct: 597 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 656

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  ++      G + + +++  +++  + I D P +  ++  +G+AG+VEK  + +  
Sbjct: 657 VTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 716

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           M      P+  T  +++  +  +     A  L   M+A+
Sbjct: 717 MLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLAL 755



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 134/282 (47%), Gaps = 8/282 (2%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD-CKPDVYTYSILIKSCTKFHR 80
           G K     YT +V   G++    + F  IN +  + V D C+P+  TY+ LI S  + + 
Sbjct: 476 GFKHDGHTYTTMVGNLGRA----KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANY 531

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            +    +  +M   G +   VTY T+ID + KA  F ++       +++GG  PD FT +
Sbjct: 532 LNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG-FLDIAMDMYQRMQAGGLSPDTFTYS 590

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I+  G +G++    K + E    G   ++ T NI+   + +A  Y     +   MQ  
Sbjct: 591 VIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNA 650

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
            F P  VTY+IV+E  G  G++E+ E  F +M+ +   P+   Y  LV  + KAG + K 
Sbjct: 651 GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 710

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
               + + ++ +  + P  N ++S + +   + +  EL   M
Sbjct: 711 WQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 752



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 1/244 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G +    TY T++   G+AK+F  +      MV  G C P+  T N +I +YG +  + +
Sbjct: 476 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNE 534

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               +N+    G K D  T   L   + +AG  D    +   MQ     P   TY+++I 
Sbjct: 535 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 594

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
             GKAGH+    + F +M  +G  PN +TY  ++  ++KA        + R ++N+    
Sbjct: 595 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 654

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           D   ++ ++   G  G +E+   +F  M++++ +PD   +  ++  +   G  E A    
Sbjct: 655 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 714

Query: 335 NKMI 338
             M+
Sbjct: 715 QAML 718



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 115/263 (43%), Gaps = 9/263 (3%)

Query: 78  FHRFDLIEKILAEMSYLGIECSAVTYNTII---DGYGKAKKFEEMESSFSAMVESGGCHP 134
             RF         +  LG+   A   N ++   + YG A  F      F  +    G   
Sbjct: 426 LRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGF------FYWLKRQPGFKH 479

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D  T  +M+   G +     + K  +E    G + +  T N L  SYGRA   ++  +V 
Sbjct: 480 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 539

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + MQ+    P  VTY  +I+   KAG ++   + +++M+  G+ P++ TY  +++   KA
Sbjct: 540 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 599

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G +     +  ++ +     +   +N ++  + +A + +   +L+  M+     PD +T+
Sbjct: 600 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 659

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
           + +++     G  E A+ +  +M
Sbjct: 660 SIVMEVLGHCGYLEEAEAVFTEM 682



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 120/296 (40%), Gaps = 29/296 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E+A  +F  M      P   VY  LV  +G++G +++A+     M   + 
Sbjct: 663 MEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLH-AG 721

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII----DGYGKAKKF 116
            +P+V T + L+ +  + ++     ++L  M  LG+  S  TY  ++    DG  K    
Sbjct: 722 LRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSK---- 777

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 173
             ++  F   + +   HP    L  M +A  +  N+       N  +LM     ++    
Sbjct: 778 --LDMGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRNHAN--NFLDLMHSEDRESKRGL 833

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT----------VVTYNIVIETFGKAGHIE 223
           ++ +     ++G  ++  SV +   ++  FP           ++  +++ E         
Sbjct: 834 VDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSR 893

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
            +  + K+M   G  P+ I    +V+ + +   +     + + VE    I  +PFF
Sbjct: 894 TLAWFRKQMLASGTCPSRI---DIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFF 946



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%)

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           +  G K +  TY ++V    +A     ++ +L ++       +T  +N +I +YG+A  +
Sbjct: 473 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 532

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +   +F  M+E  C PD +T+ T+I  +   G  + A ++  +M A
Sbjct: 533 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQA 579


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 153/307 (49%), Gaps = 2/307 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           AS L   M+   + P+V  ++AL+ A+ + G L EA    ++M   S   PD++TYS LI
Sbjct: 309 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLI 367

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                  R D  + +   M       + VTYNT+I G+ KAK+ EE    F  M + G  
Sbjct: 368 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 427

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
              + T N++I     +G+ +  +K + +    GV  DI T +IL     + G  +K   
Sbjct: 428 GNTV-TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 486

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V +++QK    P + TYNI+IE   KAG +E   + F  +  +G+KPN I Y +++S + 
Sbjct: 487 VFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC 546

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           + GL  + D++ R+++    + ++  +N +I A  + GD     EL   M+    V D  
Sbjct: 547 RKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDAS 606

Query: 313 TFATMIQ 319
           T + +I 
Sbjct: 607 TISMVIN 613



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 155/325 (47%), Gaps = 2/325 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +  +A  L + M++ G +P +  Y  +V+   + G +D A S +  M+     + DV  Y
Sbjct: 200 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIY 258

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I +   +   +    +  EM   GI  + VTYN++I       ++ +     S M+E
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
               +P++ T +++I A+   G + + EK Y+E     +  DI T + L   +      D
Sbjct: 319 RK-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           + + + + M  +  FP VVTYN +I+ F KA  +E+  E F++M  RG+  N++TY +L+
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               +AG       I +++ +  V  D   ++ ++    + G +EK   +F  +++    
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
           PD  T+  MI+     G  E   +L
Sbjct: 498 PDIYTYNIMIEGMCKAGKVEDGWDL 522



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 167/341 (48%), Gaps = 10/341 (2%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK+ +   A  L + M    ++  V +YT ++ A      +++A +   +M +  
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN-K 284

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +P+V TY+ LI+    + R+    ++L++M    I  + VT++ +ID + K  K  E 
Sbjct: 285 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 344

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQTLNI 176
           E  +  M++     PDIFT +S+I+ +      +++++  + F LM  K    ++ T N 
Sbjct: 345 EKLYDEMIKRS-IDPDIFTYSSLINGFCMH---DRLDEAKHMFELMISKDCFPNVVTYNT 400

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L K + +A   ++   +   M +R      VTYN +I+   +AG  +  ++ FKKM   G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + P+ ITY  L+    K G + K   +   ++ S +  D   +N +I    +AG VE   
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +LF ++  +   P+ I + TMI  +   G+ E A  L  +M
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 148/320 (46%), Gaps = 2/320 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+  G +P +   ++L++ Y     + EA + ++ M  V + +P+  T++ LI      +
Sbjct: 141 MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM-FVMEYQPNTVTFNTLIHGLFLHN 199

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +      ++  M   G +    TY T+++G  K    +   S    M E G    D+   
Sbjct: 200 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIY 258

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            ++I A  N  N+      + E +  G++ ++ T N L +     G +     ++  M +
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R   P VVT++ +I+ F K G + + E+ + +M  R + P+  TY SL++ +     + +
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +   + + D   +   +N +I  + +A  VE+  ELF  M +R  V + +T+ T+IQ
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438

Query: 320 AYNALGMTEAAQNLENKMIA 339
                G  + AQ +  KM++
Sbjct: 439 GLFQAGDCDMAQKIFKKMVS 458



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 2/244 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ M+   + P +  Y++L++ +     LDEA      M S  DC P+V TY+ L
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS-KDCFPNVVTYNTL 401

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           IK   K  R +   ++  EMS  G+  + VTYNT+I G  +A   +  +  F  MV S G
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV-SDG 460

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PDI T + ++      G +EK    +       ++ DI T NI+ +   +AG  +   
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +   +  +   P V+ Y  +I  F + G  E+ +  F++MK  G  PNS TY +L+ A 
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRAR 580

Query: 252 SKAG 255
            + G
Sbjct: 581 LRDG 584



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 69/167 (41%)

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           I   N L  +  +   +D + S+ + MQ       + +YNI+I  F +   +        
Sbjct: 80  IVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLG 139

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           KM   G +P+ +T  SL++ Y     I +  +++ Q+   +   +T  FN +I       
Sbjct: 140 KMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHN 199

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              +   L   M  R C PD  T+ T++      G  + A +L  KM
Sbjct: 200 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 246


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 152/308 (49%), Gaps = 1/308 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA+ + E M ++G +P +  Y  L +   Q+G +DEAF   ++M+ +    PDV TY+ 
Sbjct: 291 KQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNT 350

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L  +C K        ++L EM   G++ + VT+N +I G  K  + E      + M + G
Sbjct: 351 LADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDG 410

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T N++I A+  +GNI K     +E    G+K D  TLN +  +  +   Y++ 
Sbjct: 411 -LAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEA 469

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + ++    +R F P  V+Y  V+  + K  + E     + +M  + + P+  TY +L+  
Sbjct: 470 QGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKG 529

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            S+ G + +    L ++    ++ D   +N II AY + GD+E   +    M E    PD
Sbjct: 530 LSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPD 589

Query: 311 NITFATMI 318
            +T  T++
Sbjct: 590 VVTCNTLM 597



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 160/332 (48%), Gaps = 4/332 (1%)

Query: 12  QASL-LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           QASL  F  +++  L P+   +  LV  +   G L +A ST++ M+      PD  TY+ 
Sbjct: 186 QASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFG-LSPDAVTYNT 244

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +         +LA M   G+  +  TYNT++  Y +    ++      AM  + 
Sbjct: 245 LLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMT-AN 303

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDK 189
           G  PD++T N + +    +G +++  +  +E   +G +  D+ T N L  +  +      
Sbjct: 304 GFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSD 363

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              +++ M+++    T+VT+NIVI+   K G +E       KM   G+ P+ ITY +L+ 
Sbjct: 364 ALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIH 423

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           A+ KAG I K  +++ ++    + LDT   N ++    +    E+   L  +  +R  +P
Sbjct: 424 AHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMP 483

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           D +++ T++ AY     +E A  L ++MI  K
Sbjct: 484 DEVSYGTVMAAYFKEYNSEPALRLWDEMIEKK 515



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 146/332 (43%), Gaps = 2/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC+    A  L E M   G+K ++  +  ++    + G L+ A   +N M       PDV
Sbjct: 357 KCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMAD-DGLAPDV 415

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ LI +  K         ++ EM   G++    T NT++    K K++EE +    +
Sbjct: 416 ITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQS 475

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
             + G   PD  +  ++++AY    N E   + ++E     +   I T N L K   R G
Sbjct: 476 PPQRG-FMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMG 534

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              +    ++ + ++   P   TYNI+I  + K G +E   ++  KM     KP+ +T  
Sbjct: 535 RLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCN 594

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L++     G + K   +          +D   +N +I    + GDV+     F  M+ R
Sbjct: 595 TLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEAR 654

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              PD  T+  ++ A +  G TE AQN+ +K+
Sbjct: 655 GLQPDAFTYNVVLSALSEAGRTEEAQNMLHKL 686



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 140/310 (45%), Gaps = 39/310 (12%)

Query: 1   MVMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G CK  E    L     M  DGL P V  Y  L+ A+ ++G + +A++ +++M   
Sbjct: 385 IVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVR- 443

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILA----------EMSYLGI------------ 96
              K D +T + ++ +  K  R++  + +L           E+SY  +            
Sbjct: 444 RGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEP 503

Query: 97  -------------ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
                          S  TYNT+I G  +  + +E     + ++E G   PD  T N +I
Sbjct: 504 ALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLV-PDDTTYNIII 562

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AY   G++E   +++N+      K D+ T N L       G  DK   + +   ++   
Sbjct: 563 HAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKK 622

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
             V+TYN +I+T  K G ++    +F  M+ RG++P++ TY  ++SA S+AG   +  ++
Sbjct: 623 VDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNM 682

Query: 264 LRQVENSDVI 273
           L ++  S  +
Sbjct: 683 LHKLAESGTL 692



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 106/249 (42%), Gaps = 12/249 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K+ E+A  L +     G  P    Y  +++AY +    + A    ++M       P
Sbjct: 460 LCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIE-KKLTP 518

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            + TY+ LIK  ++  R       L E+   G+     TYN II  Y K    E      
Sbjct: 519 SISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFH 578

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + MVE+    PD+ T N++++    +G ++K  K +  +   G K D+ T N L ++  +
Sbjct: 579 NKMVENS-FKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCK 637

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG------- 236
            G  D        M+ R   P   TYN+V+    +AG  E+ +    K+   G       
Sbjct: 638 DGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFS 697

Query: 237 ---MKPNSI 242
              +KP+S+
Sbjct: 698 SPLLKPSSV 706



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 130/319 (40%), Gaps = 12/319 (3%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI------KSCTKFHR 80
           PS  +  A +SAY +  L   A   ++ ++     +P +   + ++       S +    
Sbjct: 129 PSTPLADAALSAYSRLRLPHLAAQLLHSLRRRVRVRPSLQAANAVLSALARSPSTSPQAS 188

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            D    I+A    L +  +  T+N ++  +       +  S+ S M +  G  PD  T N
Sbjct: 189 LDAFRSIVA----LRLHPNHYTFNLLVHTHCSKGTLADALSTLSTM-QGFGLSPDAVTYN 243

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           ++++A+   G + +           GV     T N L  +Y R G   +   V++ M   
Sbjct: 244 TLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTAN 303

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMK 259
            F P + TYN++     +AG +++      +M+  G + P+ +TY +L  A  K      
Sbjct: 304 GFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSD 363

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +L ++    V       N +I    + G++E        M +    PD IT+ T+I 
Sbjct: 364 ALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIH 423

Query: 320 AYNALGMTEAAQNLENKMI 338
           A+   G    A  L ++M+
Sbjct: 424 AHCKAGNIAKAYTLMDEMV 442



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 111/278 (39%), Gaps = 37/278 (13%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  L++ M+   L PS+  Y  L+    + G L EA   +N++       PD  TY+I
Sbjct: 502 EPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELME-KGLVPDDTTYNI 560

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I +  K    +   +   +M     +   VT NT+++G     K ++    F + VE G
Sbjct: 561 IIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKG 620

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
               D+ T N++I      G+++    ++ +    G++ D  T N++  +   AG  ++ 
Sbjct: 621 K-KVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEA 679

Query: 191 RSVMDFMQKR----------FFFPTVV-------------------------TYNIVIET 215
           ++++  + +              P+ V                          Y  ++  
Sbjct: 680 QNMLHKLAESGTLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNG 739

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
              +G  ++ +    +M  +GM  +S TY +L+    K
Sbjct: 740 LCTSGQFKEAKAILDEMMQKGMSVDSSTYITLMEGLVK 777


>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 426

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 156/341 (45%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--------------------------KS 57
            L P    Y+ L++ +G+ GL D A S +  M                          K+
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 58  VS--------DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
           +S           PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTM 123

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY +A
Sbjct: 243 QEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     PDNI   T I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 155/339 (45%), Gaps = 10/339 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++ GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S  ++M+ +  
Sbjct: 86  IIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVENKKFLEALSVFSEMREIK- 144

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C  D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E  
Sbjct: 145 CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAI 204

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M +      ++ T NSMI  YG +   EK      E    G++ +  T + +   
Sbjct: 205 HLFRLM-QRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISI 263

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           +G+ G  D  R+ M F + R     +  + +  +I  + +AG +     + K++ H   +
Sbjct: 264 WGKVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA----HAKRLLHELKR 317

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++I   + +   + AG I +   + RQ  ++  + D   F  +I    +      + E+
Sbjct: 318 PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEV 377

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 378 FDKMRGLGYFPDSNVIAIVLNAYGKLHEFDKANDVYMEM 416



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RQRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K+ G  P+ + Y +++  + KA L  +  S++ +++ + VI +T  ++ +
Sbjct: 61  SKAISIFSRLKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 143/294 (48%), Gaps = 6/294 (2%)

Query: 34  ALVSAYGQSGLLDEAFSTINDMKSVSDCKP-----DVYTYSILIKSCTKFHRFDLIEKIL 88
           AL+    + GL + A    + ++S+ D        DVYTY+ +I  C    +     +++
Sbjct: 37  ALLKELHKVGLSNRASELFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQLRKALELV 96

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           AEM   G+ C+  TY+ +++   KA + E     +  ++  G C P++ T N +I  +G 
Sbjct: 97  AEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREG-CTPNLVTYNILIDIHGK 155

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            GN ++  +  +     G K +++T N +  +  R+G  +    V + M      PT  T
Sbjct: 156 MGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATT 215

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y  +I  +GK G IE+    F+ M  RG + N ITY SL+SA  KAG       +L ++ 
Sbjct: 216 YTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMH 275

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
             +   +T  FN ++SA  Q G  +   ++F  M    C PD +++A +I A++
Sbjct: 276 RDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFD 329



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 133/286 (46%), Gaps = 2/286 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G  +Q  +A  L   M   G+  +V  Y+AL++   ++  L+ A      +     C P+
Sbjct: 84  GSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLR-EGCTPN 142

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY+ILI    K   +    ++L  +   G +    TYNTI+    ++ + E     + 
Sbjct: 143 LVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYE 202

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+  G   P   T  ++ISAYG +G IE+  + + +    G + ++ T + L  +  +A
Sbjct: 203 RMLADGA-QPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKA 261

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G +     ++D M +    P  VT+N ++    + G  +  ++ F++M   G KP++++Y
Sbjct: 262 GRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSY 321

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
             L+SA+ +     +    L +++      D   +N +I A  ++G
Sbjct: 322 AILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTRSG 367



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 125/262 (47%), Gaps = 13/262 (4%)

Query: 3   MLGKCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++  C +  +  L  +V   +L +G  P++  Y  L+  +G+ G   EA   ++ ++   
Sbjct: 114 LMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALED-Q 172

Query: 60  DCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
             KP+V TY+ ++ +C +     H   + E++LA+    G + +A TY  +I  YGK  K
Sbjct: 173 GTKPEVRTYNTILSACNRSGQPEHALRVYERMLAD----GAQPTATTYTALISAYGKTGK 228

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
            EE    F  MV  G C  ++ T +S+ISA   +G  +   +  +E +    K +  T N
Sbjct: 229 IEEALRIFQDMVRRG-CERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFN 287

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L  +  + G +   + V + M      P  V+Y I+I  F +     +  +   +M+ +
Sbjct: 288 ALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQ 347

Query: 236 GMKPNSITYCSLVSAYSKAGLI 257
           G +P+   Y  ++ A +++G++
Sbjct: 348 GHRPDVGVYNVVIEALTRSGVL 369



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 183 RAGMYDKMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           + G + ++R  ++    M+       V TY+ ++    KA  +E   + + ++   G  P
Sbjct: 82  QCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTP 141

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N +TY  L+  + K G   +   +L  +E+     +   +N I+SA  ++G  E    ++
Sbjct: 142 NLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVY 201

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M      P   T+  +I AY   G  E A  +   M+
Sbjct: 202 ERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMV 240


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 154/352 (43%), Gaps = 5/352 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +  + E+A  LF  +   G+ P++  Y  ++  YG+ G        + D    +  +P
Sbjct: 184 LSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEP 243

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +T S +I +C +    D       ++   G     VTYN ++  +GKA  + E     
Sbjct: 244 DGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVL 303

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E  GC PD  T N +   Y  +G  E+  +  +     G+  +  T N +  +YG 
Sbjct: 304 GEM-EQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGN 362

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+  ++ D M+K  F P V TYN+V+   GK      M E   +M   G  PN +T
Sbjct: 363 VGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVT 422

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + ++++   K G+   V  +L  + +  V L    +N +I+AYG+ G      +++  M 
Sbjct: 423 WNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMT 482

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKENSGKKLIQC 351
                P   T+  ++   +  G    AQ++ +KM        E S   L+QC
Sbjct: 483 SAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQC 534



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 143/294 (48%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           +V A G+ G  D   + +++       + DV  Y+ ++ + ++  R++   ++ AE+   
Sbjct: 144 VVRALGREGQHDAVCALLDETPLPPGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQ 203

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G+  + VTYN ++D YG+  +      +    + + G  PD FT +++I+A    G +++
Sbjct: 204 GVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDE 263

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
              ++ +    G    + T N L + +G+AG Y +   V+  M++    P  VTYN +  
Sbjct: 264 AVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAG 323

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
           T+ +AG  E+       M  +G+ PN+ TY ++++AY   G + +  ++  Q++ +  + 
Sbjct: 324 TYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVP 383

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
           +   +N ++   G+      M E+   M    C P+ +T+ TM+      GM +
Sbjct: 384 NVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMED 437



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 149/351 (42%), Gaps = 36/351 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A   FE + + G  P V  Y AL+  +G++G   EA   + +M+  + C+PD  TY+ 
Sbjct: 262 DEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQ-NGCQPDAVTYNE 320

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L  +  +   F+   + L  M+  G+  +A TYNT++  YG   K +E  + F  M ++G
Sbjct: 321 LAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTG 380

Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                                             GC P+  T N+M++  G  G  + + 
Sbjct: 381 FVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVT 440

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           +        GV+    T N L  +YGR G       + + M    F P + TYN ++   
Sbjct: 441 RVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVL 500

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            + G     +    KM+ +G KPN  +Y  L+  Y+K G +  + +I  +V  S  +  +
Sbjct: 501 SRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPS 560

Query: 277 -PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
                 ++ A  +   ++ M   F  +K R   PD + F +M+  Y   GM
Sbjct: 561 WVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGM 611



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 161/342 (47%), Gaps = 6/342 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M   G   + ++A  LF+ M   G  P+V+ Y  ++   G+          + +M S S 
Sbjct: 357 MTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEM-SRSG 415

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P+  T++ ++  C K    D + ++L  M   G+E S  TYNT+I  YG+        
Sbjct: 416 CTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAF 475

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             ++ M  S G  P I T N++++     G+    +   ++    G K + Q+ ++L + 
Sbjct: 476 KMYNEMT-SAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQC 534

Query: 181 YGRAGMYDKMRSVMD--FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           Y + G    + ++ +  +     F   V+   +VI  F K   ++ ME  F+++K RG  
Sbjct: 535 YAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANF-KCRRLDGMETAFQEVKARGYN 593

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ + + S++S Y+K G+  K   +   ++ S +  D   +N ++  Y +  +  +  ++
Sbjct: 594 PDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKI 653

Query: 299 FLTMKERHCV-PDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              +K    + PD +++ T+I  +   G+ + AQ + ++M+A
Sbjct: 654 LNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVA 695



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/322 (21%), Positives = 150/322 (46%), Gaps = 2/322 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + GK    +  + + E M S G++ S D Y  L++AYG+ G    AF   N+M S + 
Sbjct: 427 LAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTS-AG 485

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P + TY+ L+   ++   +   + I+++M   G + +  +Y+ ++  Y K      + 
Sbjct: 486 FTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIA 545

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +  + +  SG   P    L +++ A      ++ ME  + E    G   D+   N +   
Sbjct: 546 AIENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSI 605

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-HRGMKP 239
           Y + GMY K   V D +++    P ++TYN +++ + K     + E+   ++K  + MKP
Sbjct: 606 YAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKP 665

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + ++Y ++++ + K GL+ +   +L ++    +      ++ ++  Y       +  E+ 
Sbjct: 666 DVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVI 725

Query: 300 LTMKERHCVPDNITFATMIQAY 321
             M +    P  +T+  ++++Y
Sbjct: 726 GYMVQHGLKPMELTYRRVVESY 747


>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
 gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
          Length = 1354

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 153/329 (46%), Gaps = 4/329 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +LG+  QP  A  LF+   S  +   V VY +L+S Y + G  +     +  M+    
Sbjct: 87  LSVLGRANQPGLAQELFDRAES-SIGNCVQVYNSLMSVYARHGDWNSVQQLLCRMQD-RG 144

Query: 61  CKPDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           C+PD+ T++I+IK+ T+   +  L   +L ++   G+    +TYNT+I       +  + 
Sbjct: 145 CRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNNRLSDA 204

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M +  GC PDI+T N+MIS YG +G +E     +      G   D  T N +  
Sbjct: 205 ILIFEEM-QRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLH 263

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           ++ R G  +++  +   M+        +TYN +I  +GKAG   K EE + +MK  G  P
Sbjct: 264 AFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCP 323

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +S+T+  L+    KAG + +  ++   +  S V      F+ +I AY +A         +
Sbjct: 324 DSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTY 383

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTE 328
             M      PD + ++ M+  +    M E
Sbjct: 384 SCMLRAGVRPDLLAYSVMLDVFFKAEMPE 412



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 138/309 (44%), Gaps = 8/309 (2%)

Query: 27  PSVDVYTALVSAYG---QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           P+  +   ++S  G   Q GL  E F       S+ +C   V  Y+ L+    +   ++ 
Sbjct: 78  PNPRMLAVMLSVLGRANQPGLAQELFDRAES--SIGNC---VQVYNSLMSVYARHGDWNS 132

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           ++++L  M   G     VT+N +I    +    E + SS    V + G  PD  T N++I
Sbjct: 133 VQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLI 192

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           SA   +  +      + E    G   DI T N +   YGRAG  +   S+   MQ++ F 
Sbjct: 193 SACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFT 252

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P  VTYN V+  F + G IE++E     M+      + ITY +++  Y KAG+  K + +
Sbjct: 253 PDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEEL 312

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             Q++      D+  F  +I   G+AG V +   +F  M +    P    F+ MI AY  
Sbjct: 313 YVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAK 372

Query: 324 LGMTEAAQN 332
             M   A++
Sbjct: 373 ADMFSDAEH 381



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 146/319 (45%), Gaps = 1/319 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G +P +  +  ++ A  + G+ +   S++      +  +PD  TY+ LI +C+  +
Sbjct: 140 MQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLRPDTITYNTLISACSLNN 199

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R      I  EM   G +    TYN +I  YG+A + E   S F  M E G   PD  T 
Sbjct: 200 RLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFT-PDAVTY 258

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           NS++ A+   G IE++E+           +D  T N +   YG+AGM+ K   +   M++
Sbjct: 259 NSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKE 318

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P  VT+ ++I+T GKAG + +    F+ M    ++P    + +++ AY+KA +   
Sbjct: 319 EGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSD 378

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
            +     +  + V  D   ++ ++  + +A   EK   L+  M      P+   +A M++
Sbjct: 379 AEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMPEKCIILYKAMVGSGLKPELSVYAIMVR 438

Query: 320 AYNALGMTEAAQNLENKMI 338
            +         +NL  +M+
Sbjct: 439 VFYQKSSLAEIENLSKEMV 457



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 162/338 (47%), Gaps = 4/338 (1%)

Query: 2   VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-D 60
           +ML K  +  +A        + G     D    LV++Y ++G+ DEA +   DM +   +
Sbjct: 538 LMLAKAGRFSEAEEEMRTSQTYGQAQVSDFLKVLVASYDRAGMQDEALARFLDMTTEGLE 597

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
              +V   +++   C K   F   E ++  +    ++ SA+ +  II  YGK K ++  E
Sbjct: 598 MDAEVLQTAVMC-YCRKGFAFVAHELLIDCLHAFEVKDSAM-HVAIIASYGKLKLWQNAE 655

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  + +  G   +    ++++SAY  +GN E+  +  +     G++ +    N + ++
Sbjct: 656 IVFRDL-QRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNAACANYVLEA 714

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           +GRAG   ++      + +    P   T+ ++   F + G++E+    +++M+  G  P+
Sbjct: 715 FGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMREAGFSPS 774

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
              + +L++ YS+  + +  + +++ ++ + + LD   +N +IS Y + G   K   +F 
Sbjct: 775 IQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFK 834

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            M+E  C PD  TF T+I  Y+   M + AQ L  +MI
Sbjct: 835 GMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMI 872



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 121/255 (47%), Gaps = 2/255 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A L+FE M   G  P +  Y A++S YG++G + EA S+I  +       PD  TY+ ++
Sbjct: 204 AILIFEEMQRQGCDPDIWTYNAMISVYGRAGRV-EAASSIFRIMQEQGFTPDAVTYNSVL 262

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
            +  +  R + +E+I   M         +TYNT+I  YGKA    + E  +  M E G C
Sbjct: 263 HAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRC 322

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PD  T   +I   G +G + +    + +     V+  +Q  + +  +Y +A M+     
Sbjct: 323 -PDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEH 381

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
               M +    P ++ Y+++++ F KA   EK    +K M   G+KP    Y  +V  + 
Sbjct: 382 TYSCMLRAGVRPDLLAYSVMLDVFFKAEMPEKCIILYKAMVGSGLKPELSVYAIMVRVFY 441

Query: 253 KAGLIMKVDSILRQV 267
           +   + +++++ +++
Sbjct: 442 QKSSLAEIENLSKEM 456



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 147/351 (41%), Gaps = 35/351 (9%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK K  + A ++F  +   G   +   Y+AL+SAY ++G  + A   +++M + +  +P+
Sbjct: 646 GKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVA-AGLQPN 704

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
               + ++++  +  +   + +    +  +GI  ++ T+  I   + +    EE  S + 
Sbjct: 705 AACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYR 764

Query: 125 AMVESG----------------------------------GCHPDIFTLNSMISAYGNSG 150
            M E+G                                  G   D+   N MIS Y   G
Sbjct: 765 QMREAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLG 824

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           +  K    +     +G   D  T N L   Y R  M  + ++++  M K    P + TY 
Sbjct: 825 SYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYT 884

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I  +G+    E  E  FK +   G KP++  Y  +++ Y KAG   K++ ++ Q++  
Sbjct: 885 TLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMKAD 944

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
                    + ++ +YG+ G   K  E+  T+ E    PD I + ++I ++
Sbjct: 945 GFEPSLTTIHMLMDSYGKGGATGKAEEVLETLPEIGMSPDAIHYTSIINSH 995



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 132/295 (44%), Gaps = 2/295 (0%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           ++ A++++YG+  L   A     D++       +   YS L+ +  +   F+   + L  
Sbjct: 637 MHVAIIASYGKLKLWQNAEIVFRDLQR-HGFAGNTSAYSALLSAYAETGNFERATRALDN 695

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M   G++ +A   N +++ +G+A K +E+ S F   +   G  P+  T   +  A+  +G
Sbjct: 696 MVAAGLQPNAACANYVLEAFGRAGKAKEL-SEFYQRLPEMGITPNSRTFVVIFHAFSRNG 754

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           N+E+    Y +    G    IQ    L   Y R  +      ++  ++K      +  YN
Sbjct: 755 NLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYN 814

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I  + K G   K    FK M+  G  P++ T+ +L+  YS+  ++ +  ++LR++  +
Sbjct: 815 HMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKT 874

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
               +   +  +ISAYG+    E    +F ++ E  C PD   +  MI  Y   G
Sbjct: 875 GNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAG 929



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/361 (18%), Positives = 140/361 (38%), Gaps = 30/361 (8%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------- 57
           K + PE+  +L++ M+  GLKP + VY  +V  + Q   L E  +   +M          
Sbjct: 407 KAEMPEKCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSLAEIENLSKEMVQSSASLAAL 466

Query: 58  ---------------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 96
                                       V T + ++ +     +      ++  +S +  
Sbjct: 467 SSTLAKGGFYAEAAVVLKISFAQGVAVKVETLNDVLGAFEASGKLSDARDLVHAVSSIEP 526

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
             +A  Y  +     KA +F E E         G      F L  ++++Y  +G  ++  
Sbjct: 527 SVAAHLYKRLALMLAKAGRFSEAEEEMRTSQTYGQAQVSDF-LKVLVASYDRAGMQDEAL 585

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
             + +    G++ D + L      Y R G       ++      F       +  +I ++
Sbjct: 586 ARFLDMTTEGLEMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHAFEVKDSAMHVAIIASY 645

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           GK    +  E  F+ ++  G   N+  Y +L+SAY++ G   +    L  +  + +  + 
Sbjct: 646 GKLKLWQNAEIVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVAAGLQPNA 705

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
              N ++ A+G+AG  +++ E +  + E    P++ TF  +  A++  G  E A+++  +
Sbjct: 706 ACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQ 765

Query: 337 M 337
           M
Sbjct: 766 M 766



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 8/142 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYT 67
           ++A  L   M+  G  P++  YT L+SAYG+    ++A   F +I +    + CKPD   
Sbjct: 862 QEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAE----TGCKPDATA 917

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+++I    K      IE+++ +M   G E S  T + ++D YGK     + E     + 
Sbjct: 918 YNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGKAEEVLETLP 977

Query: 128 ESGGCHPDIFTLNSMISAYGNS 149
           E  G  PD     S+I+++ N+
Sbjct: 978 EI-GMSPDAIHYTSIINSHLNN 998



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 79/403 (19%), Positives = 155/403 (38%), Gaps = 69/403 (17%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M GK     +A  L+  M  +G  P    +T L+   G++G ++EA +   DM   S  +
Sbjct: 299 MYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLK-SQVR 357

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  +S +I +  K   F   E   + M   G+    + Y+ ++D + KA+  E+    
Sbjct: 358 PTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVMLDVFFKAEMPEKCIIL 417

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK-----------------------WY 159
           + AMV SG   P++     M+  +    ++ ++E                        +Y
Sbjct: 418 YKAMVGSG-LKPELSVYAIMVRVFYQKSSLAEIENLSKEMVQSSASLAALSSTLAKGGFY 476

Query: 160 NEFNLM-------GVKADIQTLNILTKSYGRAGMYDKMR-----------SVMDFMQKRF 201
            E  ++       GV   ++TLN +  ++  +G     R           SV   + KR 
Sbjct: 477 AEAAVVLKISFAQGVAVKVETLNDVLGAFEASGKLSDARDLVHAVSSIEPSVAAHLYKRL 536

Query: 202 FF---------------PTVVTY---------NIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                             T  TY          +++ ++ +AG  ++    F  M   G+
Sbjct: 537 ALMLAKAGRFSEAEEEMRTSQTYGQAQVSDFLKVLVASYDRAGMQDEALARFLDMTTEGL 596

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           + ++    + V  Y + G       +L    ++  + D+     II++YG+   + +  E
Sbjct: 597 EMDAEVLQTAVMCYCRKGFAFVAHELLIDCLHAFEVKDSAMHVAIIASYGKL-KLWQNAE 655

Query: 298 LFLTMKERHCVPDNIT-FATMIQAYNALGMTEAAQNLENKMIA 339
           +     +RH    N + ++ ++ AY   G  E A    + M+A
Sbjct: 656 IVFRDLQRHGFAGNTSAYSALLSAYAETGNFERATRALDNMVA 698


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 174/369 (47%), Gaps = 37/369 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + K+  +A L FE M   GLKP  +  +AL+  + + G +DE    I D+        
Sbjct: 20  LCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLR-IKDVMVSCGIPI 78

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY------GKAKKF- 116
           ++ TY++LI    KF + +   +IL  M  LG + ++ T+  +I+GY      G+A +  
Sbjct: 79  NLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELL 138

Query: 117 EEMES--------SFSAMVESGGCH--------------------PDIFTLNSMISAYGN 148
           +EME         S+ AM+ +G CH                    P++   +++I  Y +
Sbjct: 139 DEMEKRNLVPSAVSYGAMI-NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYAS 197

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G IE+  +  +  +  GV  DI   N +     +AG  ++  + +  +Q R   P  VT
Sbjct: 198 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 257

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           +   I  + K G + +  +YF +M   G+ PN+  Y  L++ + KAG +M+  SI R + 
Sbjct: 258 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLH 317

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              V+ D    +  I    + G V++  ++F  +KE+  VPD  T++++I  +   G  E
Sbjct: 318 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 377

Query: 329 AAQNLENKM 337
            A  L ++M
Sbjct: 378 KAFELHDEM 386



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 36/370 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L  CK    A+ L E M   GLKP+V VY+ L+  Y   G ++EA   ++ M S S   P
Sbjct: 160 LCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM-SCSGVAP 218

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D++ Y+ +I   +K  + +     L E+   G++  AVT+   I GY K  K  E    F
Sbjct: 219 DIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYF 278

Query: 124 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
             M++ G                                  G  PD+ T ++ I     +
Sbjct: 279 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKN 338

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G +++  K ++E    G+  D+ T + L   + + G  +K   + D M  +   P +  Y
Sbjct: 339 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 398

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N +++   K+G I++  + F  M  +G++P+S+TY +++  Y K+  + +  S+  ++ +
Sbjct: 399 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 458

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
             V   +  +N ++    + GD+EK   LF  M ++      ++F T+I  Y      + 
Sbjct: 459 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQE 517

Query: 330 AQNLENKMIA 339
           A  L  +MIA
Sbjct: 518 ASQLFQEMIA 527



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 161/336 (47%), Gaps = 7/336 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E+AS     +   GLKP    + A +  Y ++G + EA    ++M       P
Sbjct: 230 LSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLD-HGLMP 288

Query: 64  DVYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +   Y++LI     F   +L+E   I   +  LG+     T +  I G  K  + +E   
Sbjct: 289 NNPLYTVLING--HFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALK 346

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            FS + E G   PD+FT +S+IS +   G +EK  + ++E  L G+  +I   N L    
Sbjct: 347 VFSELKEKG-LVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGL 405

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            ++G   + R + D M ++   P  VTY+ +I+ + K+ ++ +    F +M  +G++P+S
Sbjct: 406 CKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHS 465

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             Y +LV    K G + K  ++ R++        T  FN +I  Y ++  +++  +LF  
Sbjct: 466 FVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQEASQLFQE 524

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M  +  +PD++T+ T+I  +   G  E A  L  +M
Sbjct: 525 MIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEM 560



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+ YTY+I+     +  R +  +    EM   G++      + +IDG+ +    +E+   
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 67

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              MV S G   ++ T N +I      G +EK  +       +G K + +T  +L + Y 
Sbjct: 68  KDVMV-SCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYC 126

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R     +   ++D M+KR   P+ V+Y  +I        +    +  +KM   G+KPN +
Sbjct: 127 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVV 186

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y +L+  Y+  G I +   +L  +  S V  D   +N IIS   +AG +E+     L +
Sbjct: 187 VYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEI 246

Query: 303 KERHCVPDNITFATMIQAYNALG-MTEAAQ 331
           + R   PD +TF   I  Y+  G MTEAA+
Sbjct: 247 QGRGLKPDAVTFGAFILGYSKTGKMTEAAK 276



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 156/342 (45%), Gaps = 21/342 (6%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F  +   GL P V  Y++L+S + + G +++AF  ++D   +    P+++ Y+ 
Sbjct: 342 QEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE-LHDEMCLKGIAPNIFIYNA 400

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K        K+   M   G+E  +VTY+T+IDGY K++   E  S F  M  S 
Sbjct: 401 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM-PSK 459

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P  F  N+++      G++EK    + E    G  A   + N L   Y ++    + 
Sbjct: 460 GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEA 518

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR--------------- 235
             +   M  +   P  VTY  VI+   KAG +E+    FK+M+ R               
Sbjct: 519 SQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMV 578

Query: 236 --GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G+KP+ +TY  ++ A+ K   +++   +  +V    ++      + +I+A  +  D+ 
Sbjct: 579 AKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLT 638

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
           +  +L   M E    P     +T++++++  G M EA +  E
Sbjct: 639 EASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFE 680



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 145/311 (46%), Gaps = 23/311 (7%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  + + G+ P V   +A +    ++G + EA    +++K      PDV+TYS L
Sbjct: 308 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE-KGLVPDVFTYSSL 366

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K    +   ++  EM   GI  +   YN ++DG  K+   +     F  M E G 
Sbjct: 367 ISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG- 425

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK-M 190
             PD  T ++MI  Y  S N+ +    ++E    GV+      N L     + G  +K M
Sbjct: 426 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 485

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
               + +QK F   T +++N +I+ + K+  I++  + F++M  + + P+ +TY +++  
Sbjct: 486 NLFREMLQKGF--ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDW 543

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + KAG + + + + ++++  ++I+DT F                   LF  M  +   PD
Sbjct: 544 HCKAGKMEEANLLFKEMQERNLIVDTVF------------------ALFEKMVAKGVKPD 585

Query: 311 NITFATMIQAY 321
            +T+  +I A+
Sbjct: 586 EVTYGLVIYAH 596



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 92/207 (44%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+ +T   + +    +  + + +  + E    G+K D    + L   + R G  D++
Sbjct: 5   GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 64

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + D M        ++TYN++I    K G +EK  E  K M   G KPNS T+C L+  
Sbjct: 65  LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEG 124

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y +   + +   +L ++E  +++     +  +I+      D+    +L   M      P+
Sbjct: 125 YCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN 184

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            + ++T+I  Y + G  E A+ L + M
Sbjct: 185 VVVYSTLIMGYASEGRIEEARRLLDGM 211



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 60/125 (48%)

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M ++   P   TY I+     +A  + + +  F++M+  G+KP+     +L+  + + G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           I +V  I   + +  + ++   +N +I    + G +EK  E+   M    C P++ TF  
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 317 MIQAY 321
           +I+ Y
Sbjct: 121 LIEGY 125



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M++ G+KP    Y  ++ A+ +   L EAF   +++            + +LI + 
Sbjct: 573 LFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT-IHDLLITAL 631

Query: 76  TKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
            K  R DL E  K+L EM  LG++ S    +T++  + +A K +E    F   V+S G  
Sbjct: 632 CK--REDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEG-VKSLGLV 688

Query: 134 PDIFTLNSMISAYGNSGNIE 153
           PD  TL  +++   N  + E
Sbjct: 689 PDTTTLIDLVNGNLNDTDSE 708


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 175/369 (47%), Gaps = 37/369 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + K+  +A L FE M   GLKP  +  +AL+  + + G +DE    I D+        
Sbjct: 308 LCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLR-IKDVMVSCGIPI 366

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY------GKAKKF- 116
           ++ TY++LI    KF + +   +IL  M  LG + ++ T+  +I+GY      G+A +  
Sbjct: 367 NLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELL 426

Query: 117 EEMES--------SFSAMVESGGCH--------------------PDIFTLNSMISAYGN 148
           +EME         S+ AM+ +G CH                    P++   + +I AY +
Sbjct: 427 DEMEKRNLVPSAVSYGAMI-NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYAS 485

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G IE+  +  +  +  GV  DI   N +     +AG  ++  + +  +Q R   P  VT
Sbjct: 486 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 545

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           +   I  + K G + +  +YF +M   G+ PN+  Y  L++ + KAG +M+  SI R++ 
Sbjct: 546 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLH 605

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              V+ D    +  I    + G V++  ++F  +KE+  VPD  T++++I  +   G  E
Sbjct: 606 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 665

Query: 329 AAQNLENKM 337
            A  L ++M
Sbjct: 666 KAFELHDEM 674



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 167/370 (45%), Gaps = 36/370 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L  CK    A+ L E M   GLKP+V VY+ L+ AY   G ++EA   ++ M S S   P
Sbjct: 448 LCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGM-SCSGVAP 506

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D++ Y+ +I   +K  + +     L E+   G++  AVT+   I GY K  K  E    F
Sbjct: 507 DIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYF 566

Query: 124 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
             M++ G                                  G  PD+ T ++ I     +
Sbjct: 567 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKN 626

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G +++  K ++E    G+  D+ T + L   + + G  +K   + D M  +   P +  Y
Sbjct: 627 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 686

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N +++   K+G I++  + F  M  +G++P+S+TY +++  Y K+  + +  S+  ++ +
Sbjct: 687 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 746

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
             V   +  +N ++    + GD+EK   LF  M ++      ++F T+I  Y      + 
Sbjct: 747 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQE 805

Query: 330 AQNLENKMIA 339
           A  L  +MIA
Sbjct: 806 ASQLFQEMIA 815



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 161/330 (48%), Gaps = 7/330 (2%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+  F+ ML  GL P+  +YT L++ + ++G L EA S    + ++    PDV T S  
Sbjct: 561 EAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALG-VLPDVQTCSAF 619

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-- 129
           I    K  R     K+ +E+   G+     TY+++I G+ K     E+E +F    E   
Sbjct: 620 IHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG---EVEKAFELHDEMCL 676

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G  P+IF  N+++     SG+I++  K ++     G++ D  T + +   Y ++    +
Sbjct: 677 KGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE 736

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             S+   M  +   P    YN ++    K G +EK    F++M  +G    ++++ +L+ 
Sbjct: 737 AFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLID 795

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            Y K+  I +   + +++    ++ D   +  +I  + +AG +E+   LF  M+ER+ + 
Sbjct: 796 GYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIV 855

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIA 339
           D +T+ +++  YN LG +     L  KM+A
Sbjct: 856 DTVTYTSLMYGYNKLGQSSEVFALFEKMVA 885



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 3/309 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P+  +Y+ ++    Q G +DEA      M       P+ YTY+I+     +  R + 
Sbjct: 258 GLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGE-KGLVPNTYTYTIITAGLCRAKRMNE 316

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            +    EM   G++      + +IDG+ +    +E+      MV S G   ++ T N +I
Sbjct: 317 AKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMV-SCGIPINLITYNVLI 375

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 G +EK  +       +G K + +T  +L + Y R     +   ++D M+KR   
Sbjct: 376 HGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLV 435

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P+ V+Y  +I        +    +  +KM   G+KPN + Y  L+ AY+  G I +   +
Sbjct: 436 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRL 495

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L  +  S V  D   +N IIS   +AG +E+     L ++ R   PD +TF   I  Y+ 
Sbjct: 496 LDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSK 555

Query: 324 LG-MTEAAQ 331
            G MTEAA+
Sbjct: 556 TGKMTEAAK 564



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 152/311 (48%), Gaps = 5/311 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  + + G+ P V   +A +    ++G + EA    +++K      PDV+TYS L
Sbjct: 596 EALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE-KGLVPDVFTYSSL 654

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K    +   ++  EM   GI  +   YN ++DG  K+   +     F  M E G 
Sbjct: 655 ISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG- 713

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK-M 190
             PD  T ++MI  Y  S N+ +    ++E    GV+      N L     + G  +K M
Sbjct: 714 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 773

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
               + +QK F   T +++N +I+ + K+  I++  + F++M  + + P+ +TY +++  
Sbjct: 774 NLFREMLQKGF--ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDW 831

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + KAG + + + + ++++  ++I+DT  +  ++  Y + G   ++  LF  M  +   PD
Sbjct: 832 HCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPD 891

Query: 311 NITFATMIQAY 321
            +T+  +I A+
Sbjct: 892 EVTYGLVIYAH 902



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 155/360 (43%), Gaps = 39/360 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F  +   GL P V  Y++L+S + + G +++AF  ++D   +    P+++ Y+ 
Sbjct: 630 QEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE-LHDEMCLKGIAPNIFIYNA 688

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K        K+   M   G+E  +VTY+T+IDGY K++   E  S F  M  S 
Sbjct: 689 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM-PSK 747

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P  F  N+++      G++EK    + E    G  A   + N L   Y ++    + 
Sbjct: 748 GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEA 806

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR--------------- 235
             +   M  +   P  VTY  VI+   KAG +E+    FK+M+ R               
Sbjct: 807 SQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYG 866

Query: 236 --------------------GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                               G+KP+ +TY  ++ A+ K   +++   +  +V    ++  
Sbjct: 867 YNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTK 926

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
               + +I+A  +  D+ +  +L   M E    P      T++++++  G M EA +  E
Sbjct: 927 GTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFE 986



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 152/336 (45%), Gaps = 5/336 (1%)

Query: 5    GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            G CK    ++A  LF+ M   GL+P    Y+ ++  Y +S  + EAFS  ++M S    +
Sbjct: 692  GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS-KGVQ 750

Query: 63   PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            P  + Y+ L+  C K    +    +  EM   G   + +++NT+IDGY K+ K +E    
Sbjct: 751  PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQL 809

Query: 123  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            F  M+ +    PD  T  ++I  +  +G +E+    + E     +  D  T   L   Y 
Sbjct: 810  FQEMI-AKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYN 868

Query: 183  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            + G   ++ ++ + M  +   P  VTY +VI    K  ++ +  +   ++  +GM     
Sbjct: 869  KLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT 928

Query: 243  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
             +  L++A  K   + +   +L ++    +       N ++ ++ +AG +++   +F  +
Sbjct: 929  IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGV 988

Query: 303  KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            K    VPD  T   ++        +E A+NL  +++
Sbjct: 989  KSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 1024



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 150/351 (42%), Gaps = 22/351 (6%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G C+    ++A  L   M   GL P+   YT + +   ++  ++EA  T  +M+  
Sbjct: 268 LVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQK- 326

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +  KPD    S LI    +    D + +I   M   GI  + +TYN +I G  K  K E+
Sbjct: 327 TGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEK 386

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  MV + GC P+  T   +I  Y    N+ +  +  +E         ++  N++ 
Sbjct: 387 AAEILKGMV-TLGCKPNSRTFCLLIEGYCREHNMGRALELLDE---------MEKRNLVP 436

Query: 179 KSYGRAGMYDKMRSVMDF------MQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYF 229
            +     M + +    D       ++K  F    P VV Y+I+I  +   G IE+     
Sbjct: 437 SAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLL 496

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
             M   G+ P+   Y +++S  SKAG + +  + L +++   +  D   F   I  Y + 
Sbjct: 497 DGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKT 556

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           G + +  + F  M +   +P+N  +  +I  +   G    A ++  ++ A+
Sbjct: 557 GKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHAL 607



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 128/310 (41%), Gaps = 37/310 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ +F V  +D +  S+    +L+    + G+++  +   N M   +    DVYTY+ 
Sbjct: 175 DEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGMLD-AKMGFDVYTYTY 233

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  K       +++L EM   G+  +   Y+ +I+G  +    +E      +M E G
Sbjct: 234 LVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKG 293

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P+ +T   + +    +  + + +  + E    G+K D    + L   + R G  D++
Sbjct: 294 -LVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 352

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + D M        ++TYN++I    K G +EK  E  K M   G KPNS T+C L+  
Sbjct: 353 LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEG 412

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y                             C     G+A       EL   M++R+ VP 
Sbjct: 413 Y-----------------------------CREHNMGRAL------ELLDEMEKRNLVPS 437

Query: 311 NITFATMIQA 320
            +++  MI  
Sbjct: 438 AVSYGAMING 447



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/285 (19%), Positives = 122/285 (42%), Gaps = 6/285 (2%)

Query: 37  SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 96
           + Y  S +LD   S +   ++     P V+   ILI S  +    D    +        I
Sbjct: 135 TPYSSSSILD---SVLFWFRNYGGSSPVVF--DILIDSYKRMGMLDEAANVFFVAKNDSI 189

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
             S +  N+++    K    E     ++ M+++     D++T   ++ A   +G++   +
Sbjct: 190 LISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGF-DVYTYTYLVGALCKTGDLRGAK 248

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           +   E +  G+  +    +++ +   + G  D+   +   M ++   P   TY I+    
Sbjct: 249 RVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGL 308

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            +A  + + +  F++M+  G+KP+     +L+  + + G I +V  I   + +  + ++ 
Sbjct: 309 CRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINL 368

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             +N +I    + G +EK  E+   M    C P++ TF  +I+ Y
Sbjct: 369 ITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGY 413


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 1080

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 165/334 (49%), Gaps = 4/334 (1%)

Query: 7    CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            CKQ +  +A  L +   S G+     +Y +L+       L+D A     +MK +  C PD
Sbjct: 731  CKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG-CGPD 789

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +TY++L+ +  K  R + + K+  EM   G E + VTYNTII G  K+++ E+    + 
Sbjct: 790  EFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYY 849

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             ++ S G  P   T   ++     +G IE  E  +NE    G KA+    NIL   +  A
Sbjct: 850  NLM-SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIA 908

Query: 185  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
            G  +K+  +   M  +   P + +Y I+I+T  KAG +     YF+++   G++P+ ITY
Sbjct: 909  GNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITY 968

Query: 245  CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
              L+    K+  + +  S+  +++   ++ +   +N +I   G+AG   + G+++  +  
Sbjct: 969  NLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLT 1028

Query: 305  RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +   P+  T+  +I+ Y+  G T++A     +MI
Sbjct: 1029 KGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMI 1062



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 147/309 (47%), Gaps = 2/309 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A  ++ VM+ DG+ PSV  Y+ L+ A+G+   ++     + +M++    KP+VY+Y+I
Sbjct: 177 REALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEA-HGVKPNVYSYTI 235

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            I+   +  RFD   +ILA+M   G +   +T+  +I     A +  + +  F  M +S 
Sbjct: 236 CIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 295

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T  +++  +G++G+ + + + +N     G   ++     +  +  + G   + 
Sbjct: 296 Q-KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 354

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + D M+++   P   +YN +I  F KA       E FK M   G KPN  T+   ++ 
Sbjct: 355 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINY 414

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K+G  +K       +++  ++ D    N ++    ++G +     +F  +K     PD
Sbjct: 415 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 474

Query: 311 NITFATMIQ 319
            IT+  MI+
Sbjct: 475 TITYTMMIK 483



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 161/371 (43%), Gaps = 35/371 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV  GK +  E    L   M + G+KP+V  YT  +   GQ+   DEA+  +  M++   
Sbjct: 202 MVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMEN-EG 260

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG--------- 111
           CKPDV T+++LI+      R    + +  +M     +   VTY T++D +G         
Sbjct: 261 CKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVM 320

Query: 112 ------KAKKFEEMESSFSAMVES-------------------GGCHPDIFTLNSMISAY 146
                 KA  + +   +++A++++                    G  P+ ++ NS+IS +
Sbjct: 321 EIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGF 380

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +       + +   ++ G K +  T  +    YG++G   K     + M+ +   P V
Sbjct: 381 LKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDV 440

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V  N V+    K+G +   +  F ++K  G+ P++ITY  ++   SKA    +   I   
Sbjct: 441 VAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYD 500

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +  ++ + D    N +I    +AG  ++   +F  +KE +  P + T+ T++      G 
Sbjct: 501 MIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGK 560

Query: 327 TEAAQNLENKM 337
            +   +L  +M
Sbjct: 561 VKEVMHLLEEM 571



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 146/303 (48%), Gaps = 2/303 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++  M +DG   +V  YTA++ A  Q G + EA    ++MK      P+ Y+Y+ LI   
Sbjct: 322 IWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQ-KGIVPEQYSYNSLISGF 380

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  RF    ++   M   G + +  T+   I+ YGK+ +  +    +  M +S G  PD
Sbjct: 381 LKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELM-KSKGIVPD 439

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +   N+++     SG +   ++ ++E   MGV  D  T  ++ K   +A  +D+   +  
Sbjct: 440 VVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFY 499

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M +    P V+  N +I+T  KAG  ++    F ++K   ++P   TY +L++   + G
Sbjct: 500 DMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREG 559

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +V  +L ++ +S+   +   +N I+    + G V    ++  +M  + C+PD  ++ 
Sbjct: 560 KVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYN 619

Query: 316 TMI 318
           T+I
Sbjct: 620 TVI 622



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 142/330 (43%), Gaps = 2/330 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
             A +   VM   G+  +   Y  LV    +SG   EA      M  V    P V TYS+
Sbjct: 142 RSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMM-VDGVVPSVRTYSV 200

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  K    + +  +L EM   G++ +  +Y   I   G+AK+F+E     + M E+ 
Sbjct: 201 LMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKM-ENE 259

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PD+ T   +I    ++G I   +  + +      K D  T   L   +G  G    +
Sbjct: 260 GCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSV 319

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + + M+   +   VV Y  VI+   + G + +  E F +MK +G+ P   +Y SL+S 
Sbjct: 320 MEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISG 379

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + KA        + + ++      +       I+ YG++G+  K  + +  MK +  VPD
Sbjct: 380 FLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 439

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +    ++      G    A+ + +++ AM
Sbjct: 440 VVAGNAVLFGLAKSGRLGMAKRVFHELKAM 469



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 112/244 (45%), Gaps = 2/244 (0%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K ++ EQA  L+  ++S G  P+   Y  L+    ++G +++A +  N+M     CK 
Sbjct: 835  LVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG-CKA 893

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            +   Y+IL+         + +  +  +M   GI     +Y  IID   KA +  +  + F
Sbjct: 894  NCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYF 953

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              ++E G   PD+ T N +I   G S  +E+    +NE    G+  ++ T N L    G+
Sbjct: 954  RQLLEMG-LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1012

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            AG   +   + + +  + + P V TYN +I  +  +G  +     + +M   G  PNS T
Sbjct: 1013 AGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1072

Query: 244  YCSL 247
            Y  L
Sbjct: 1073 YMQL 1076



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 104/242 (42%), Gaps = 1/242 (0%)

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
           ++ +  T+  I  G G          +   M E+G    + +T N ++     SG   + 
Sbjct: 121 VKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAG-IVLNAYTYNGLVYFLVKSGFDREA 179

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            + Y    + GV   ++T ++L  ++G+    + +  ++  M+     P V +Y I I  
Sbjct: 180 LEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRV 239

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
            G+A   ++      KM++ G KP+ IT+  L+     AG I     +  +++ SD   D
Sbjct: 240 LGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPD 299

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +  ++  +G  GD + + E++  MK      + + +  +I A   +G    A  + +
Sbjct: 300 RVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFD 359

Query: 336 KM 337
           +M
Sbjct: 360 EM 361



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 81/198 (40%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N M+      G +  M + ++      VKA++ T   +    G  G        +  M++
Sbjct: 94  NYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKE 153

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
                   TYN ++    K+G   +  E ++ M   G+ P+  TY  L+ A+ K   +  
Sbjct: 154 AGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVET 213

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           V  +LR++E   V  +   +   I   GQA   ++   +   M+   C PD IT   +IQ
Sbjct: 214 VLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQ 273

Query: 320 AYNALGMTEAAQNLENKM 337
                G    A+++  KM
Sbjct: 274 VLCDAGRISDAKDVFWKM 291



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 70/370 (18%), Positives = 140/370 (37%), Gaps = 37/370 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  + ++   L E M      P++  Y  ++    ++G +++A   +  M +   C P
Sbjct: 555 LGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM-TTKGCIP 613

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE----- 118
           D+ +Y+ +I    K  R++    I  +M  + I   A T  TI+  + K    +E     
Sbjct: 614 DLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYA-TLCTILPSFVKIGLMKEALHII 672

Query: 119 -------------------MES-----------SFSAMVESGGCHPDIFTLNSMISAYGN 148
                              ME             F+ ++ S G   D F L  +I     
Sbjct: 673 KDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCK 732

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
                +  +   +F   GV       N L        + D    +   M++    P   T
Sbjct: 733 QKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFT 792

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN++++  GK+  IE+M +  ++M  +G +   +TY +++S   K+  + +   +   + 
Sbjct: 793 YNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLM 852

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
           +         +  ++    +AG +E    LF  M E  C  +   +  ++  +   G TE
Sbjct: 853 SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTE 912

Query: 329 AAQNLENKMI 338
              +L   M+
Sbjct: 913 KVCHLFQDMV 922



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 7/210 (3%)

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
            ++++ SA G +  +E+      +  +    A    +  L + +GR G    M  V D M
Sbjct: 60  VIHALRSADGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVG---DMAEVFDVM 116

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           Q++     V T+  +    G  G +         MK  G+  N+ TY  LV    K+G  
Sbjct: 117 QRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFD 176

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            +   + R +    V+     ++ ++ A+G+  DVE +  L   M+     P+  ++   
Sbjct: 177 REALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTIC 236

Query: 318 IQAYNALGMTEAAQNLENKMIAMKENSGKK 347
           I+        + A  +  KM    EN G K
Sbjct: 237 IRVLGQAKRFDEAYRILAKM----ENEGCK 262


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 159/335 (47%), Gaps = 2/335 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + ++A  L   M   G+KP+V VY+A +SA  + G  + A   + +M +V    PDV
Sbjct: 233 KVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVG-LAPDV 291

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TYS +I +C K  +++   ++L EM   G+  + +TY+ +I    K  ++EE  +    
Sbjct: 292 ITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLRE 351

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M E+G   PD+ T +S ISA    G  E+      E  + GV  +  +  I+  +  + G
Sbjct: 352 MQENG-VAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRG 410

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            + +   ++  MQ     P V+ Y+  I+   +A   E+     ++M   G+ PN I+Y 
Sbjct: 411 RWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYN 470

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           S + A +K G       +LR++    +  D   ++ +I++       E+  +LF  M+ +
Sbjct: 471 SAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQ 530

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
              PD ++  T I A    G  E A ++  +M  M
Sbjct: 531 GITPDVVSCNTAINACAQGGWWEEALDVLGEMPTM 565



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 148/324 (45%), Gaps = 2/324 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + + M   G+KP    Y++ ++A G +   + A   +  M +     PDV TYS  I +C
Sbjct: 173 VLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASM-AARGTPPDVLTYSSAIAAC 231

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R+     +L  M   G++ + + Y+  I    K  ++E        M  + G  PD
Sbjct: 232 AKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEM-PAVGLAPD 290

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T +++I A    G  E   +   E    GV A+I T +I+  +  + G +++  +++ 
Sbjct: 291 VITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLR 350

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            MQ+    P V+TY+  I    K G  E+     ++M   G+ PN+I+Y  ++SA +K G
Sbjct: 351 EMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRG 410

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
              +   +L++++   V  D   ++  I A  QA   E+   L   M      P+ I++ 
Sbjct: 411 RWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYN 470

Query: 316 TMIQAYNALGMTEAAQNLENKMIA 339
           + I A    G ++ A  L  +M A
Sbjct: 471 SAIDACAKTGRSKIAVELLREMPA 494



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 140/315 (44%), Gaps = 8/315 (2%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E+A  L   M  +G+ P+   Y  ++SA  + G   EA   + +M++     PDV  Y
Sbjct: 376 QWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQA-HGVPPDVINY 434

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG---YGKAKKFEEMESSFSA 125
           S  I +C +  R++    +L EM   G+  + ++YN+ ID     G++K   E+     A
Sbjct: 435 SAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPA 494

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
                G  PD+ T +++I++       E+    + E    G+  D+ + N    +  + G
Sbjct: 495 H----GLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGG 550

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            +++   V+  M      P  ++Y   I+   K    +++ +  ++M   G+ P++I+Y 
Sbjct: 551 WWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYR 610

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
             +SA S  GL  +   +LR +    +  D   +N  I+A  + G  ++   L   M   
Sbjct: 611 FAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTF 670

Query: 306 HCVPDNITFATMIQA 320
              PD  +F   I A
Sbjct: 671 GLAPDVNSFNAAIDA 685



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M + G+ P V  Y+A + A  Q+   ++A   + +M + +   P+V +Y+  I +C
Sbjct: 418 LLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPA-TGLTPNVISYNSAIDAC 476

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R  +  ++L EM   G+    +TY+ +I      +++EE    F  M +  G  PD
Sbjct: 477 AKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREM-QRQGITPD 535

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + + N+ I+A    G  E+      E   MG+  D  +      +  +   + ++  ++ 
Sbjct: 536 VVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLR 595

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M      P  ++Y   +      G  ++     + M   G+ P+ +TY S ++A +K G
Sbjct: 596 EMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGG 655

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
              +   +LRQ+    +  D   FN  I A G         E+   M+     P+  T+ 
Sbjct: 656 RWKEATVLLRQMPTFGLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATYL 715

Query: 316 TMIQAYNALG 325
           T + A    G
Sbjct: 716 TAMYACKRCG 725



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 149/332 (44%), Gaps = 2/332 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E A  L   M + G+  ++  Y+ ++ A  + G  +EA + + +M+  +   PDV TY
Sbjct: 306 QWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQE-NGVAPDVITY 364

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S  I +C K  +++    +L EM   G+  +A++Y  +I    K  ++ E       M +
Sbjct: 365 SSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEM-Q 423

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           + G  PD+   ++ I A   +   E+      E    G+  ++ + N    +  + G   
Sbjct: 424 AHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSK 483

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
               ++  M      P V+TY+ VI +       E+  + F++M+ +G+ P+ ++  + +
Sbjct: 484 IAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAI 543

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           +A ++ G   +   +L ++    ++ D   +   I A  +    +++ +L   M      
Sbjct: 544 NACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLT 603

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           PD I++   + A +  G+ + A  L   M+A+
Sbjct: 604 PDAISYRFAMSACSVDGLWKEALVLLRDMLAV 635



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%)

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G + K   V+D MQ++   P    Y+  I   G A   E+  E    M  RG  P+ +TY
Sbjct: 165 GDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTY 224

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            S ++A +K     +   +LR ++   V  +   ++  ISA  + G  E   +L   M  
Sbjct: 225 SSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPA 284

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNL 333
               PD IT++T+I A    G  E A  L
Sbjct: 285 VGLAPDVITYSTVIDACAKRGQWEPAFRL 313


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 162/334 (48%), Gaps = 5/334 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ L + K+ E+A +L   M   G+KP+   Y A ++ Y +SG +  A     DM S S 
Sbjct: 528 IIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLS-SG 586

Query: 61  CKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             P+   Y+ILIK  C   +  + +      M   G+      Y+ II    K  K +E 
Sbjct: 587 IVPNNVIYTILIKGHCDVGNTVEALSTFKC-MLEKGLIPDIRAYSAIIHSLSKNGKTKEA 645

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F   +++G   PD+F  NS+IS +   G+IEK  + Y+E    G+  +I   N L  
Sbjct: 646 MGVFLKFLKTG-VVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLIN 704

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G   K R + D ++++   P VVTY+ +I+ + K+G++ +  + F +M  +G+ P
Sbjct: 705 GLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISP 764

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +   YC L+    K G + K  S+  + +   V      FN +I ++ + G V +  ELF
Sbjct: 765 DGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEARELF 823

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             M ++   P+ +T+  +I AY    M E A+ L
Sbjct: 824 DDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQL 857



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 153/320 (47%), Gaps = 3/320 (0%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F+ ML  GL P +  Y+A++ +  ++G   EA          +   PDV+ Y+ LI    
Sbjct: 614 FKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLK-TGVVPDVFLYNSLISGFC 672

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K    +   ++  EM + GI  + V YNT+I+G  K  +  +    F   +E     PD+
Sbjct: 673 KEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDE-IEEKDLVPDV 731

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            T +++I  Y  SGN+ +  K ++E    G+  D     IL    G+ G  +K  S+   
Sbjct: 732 VTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE 791

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
            Q++    ++  +N +I++F K G + +  E F  M  + + PN +TY  L+ AY KA +
Sbjct: 792 AQQKSV-GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEM 850

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + + + +   +E  ++I +T  +  ++ +Y Q G+  KM  LF  M+ R    D I +  
Sbjct: 851 MEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGV 910

Query: 317 MIQAYNALGMTEAAQNLENK 336
           M  AY   G +  A  L NK
Sbjct: 911 MASAYCKEGKSLEALKLLNK 930



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 142/287 (49%), Gaps = 3/287 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + ++A  +F   L  G+ P V +Y +L+S + + G +++A    ++M   +   P
Sbjct: 636 LSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLH-NGINP 694

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++  Y+ LI    K        ++  E+    +    VTY+TIIDGY K+    E    F
Sbjct: 695 NIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLF 754

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ S G  PD +    +I   G  GN+EK    ++E     V   +   N L  S+ +
Sbjct: 755 DEMI-SKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCK 812

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   + R + D M  +   P +VTY I+I+ +GKA  +E+ E+ F  M+ R + PN++T
Sbjct: 813 HGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLT 872

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           Y SL+ +Y++ G   K+ S+ + +E   +  D   +  + SAY + G
Sbjct: 873 YTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEG 919



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 155/328 (47%), Gaps = 4/328 (1%)

Query: 5   GKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   ++A L+FE M S GL P+   YTAL+  + + G ++EA   I D       K
Sbjct: 320 GFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALR-IKDEMITRGLK 378

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            +V TY+ +I    K         +  EM   G+E    TYN +IDGY K+    +    
Sbjct: 379 LNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAK-ACE 437

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             A +++    P  FT + +IS   +S +++K  +  ++    GVK ++     L K+Y 
Sbjct: 438 LLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYV 497

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +   Y+    ++  M      P +  YN +I    +A  +E+ +     M  +G+KPN+ 
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAH 557

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY + ++ YSK+G I   +   + + +S ++ +   +  +I  +   G+  +    F  M
Sbjct: 558 TYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCM 617

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
            E+  +PD   ++ +I + +  G T+ A
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKEA 645



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 156/328 (47%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L   M +  L PS   Y+ L+S    S  L +A   ++ M   +  KP+V+ Y  L
Sbjct: 434 KACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR-NGVKPNVFMYGTL 492

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           IK+  +  R+++  ++L  M   G+      YN +I G  +AKK EE +     M E G 
Sbjct: 493 IKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKG- 551

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P+  T  + I+ Y  SG I+  E+++ +    G+  +     IL K +   G   +  
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEAL 611

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           S    M ++   P +  Y+ +I +  K G  ++    F K    G+ P+   Y SL+S +
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGF 671

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K G I K   +  ++ ++ +  +   +N +I+   + G+V K  ELF  ++E+  VPD 
Sbjct: 672 CKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDV 731

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
           +T++T+I  Y   G    A  L ++MI+
Sbjct: 732 VTYSTIIDGYCKSGNLTEAFKLFDEMIS 759



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 2/314 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP++  Y A +    Q+G +DEA   +  +       PD +TY++L+    K  R    +
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALE-VKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAK 331

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            I   M   G+  +  TY  +IDG+ K    EE       M+ + G   ++ T N+MI  
Sbjct: 332 LIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMI-TRGLKLNVVTYNAMIGG 390

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
              +G + K    +NE  + G++ D  T N+L   Y ++    K   ++  M+ R   P+
Sbjct: 391 IAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPS 450

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
             TY+++I     +  ++K  E   +M   G+KPN   Y +L+ AY +         +L+
Sbjct: 451 PFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLK 510

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            +  + V+ D   +NC+I    +A  VE+   L + M E+   P+  T+   I  Y+  G
Sbjct: 511 IMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSG 570

Query: 326 MTEAAQNLENKMIA 339
             + A+     M++
Sbjct: 571 EIQVAERYFKDMLS 584



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 151/319 (47%), Gaps = 8/319 (2%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+   + P V  YT ++ A+ + G + +    +++M+   +CKP+++TY+  I    +  
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK--ECKPNLFTYNAFIGGLCQTG 290

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             D   ++   M   G+     TY  ++DG+ K K+ +E +  F +M  S G +P+ FT 
Sbjct: 291 AVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESM-PSSGLNPNRFTY 349

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            ++I  +   GNIE+  +  +E    G+K ++ T N +     +AG   K  S+ + M  
Sbjct: 350 TALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM 409

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P   TYN++I+ + K+  + K  E   +MK R + P+  TY  L+S    +  + K
Sbjct: 410 AGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQK 469

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
            + +L Q+  + V  +   +  +I AY Q    E   EL   M     +PD   +  +I 
Sbjct: 470 ANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLI- 528

Query: 320 AYNALGMTEAAQNLENKMI 338
               +G+  A +  E KM+
Sbjct: 529 ----IGLCRAKKVEEAKML 543



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 154/329 (46%), Gaps = 7/329 (2%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E+AS L++ ML +G+ P++ VY  L++   + G + +A    ++++   D  
Sbjct: 670 GFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEE-KDLV 728

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TYS +I    K        K+  EM   GI      Y  +IDG GK    E+  S 
Sbjct: 729 PDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSL 788

Query: 123 F-SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F  A  +S G    +   NS+I ++   G + +  + +++     +  +I T  IL  +Y
Sbjct: 789 FHEAQQKSVG---SLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAY 845

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+A M ++   +   M+ R   P  +TY  ++ ++ + G+  KM   FK M+ RG+  ++
Sbjct: 846 GKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDA 905

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           I Y  + SAY K G  ++   +L +     + L+   F+ +I    +   +  + EL   
Sbjct: 906 IAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSE 965

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAA 330
           M +      + T  T++  +   G  + A
Sbjct: 966 MGKEELSLSSKTCNTLLLGFYKSGNEDEA 994



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 5/316 (1%)

Query: 5    GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            G CK  E  +A  LF+ +    L P V  Y+ ++  Y +SG L EAF   ++M S     
Sbjct: 705  GLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMIS-KGIS 763

Query: 63   PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            PD Y Y ILI  C K    +    +  E     +  S   +N++ID + K  K  E    
Sbjct: 764  PDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEAREL 822

Query: 123  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            F  MV+     P+I T   +I AYG +  +E+ E+ + +     +  +  T   L  SY 
Sbjct: 823  FDDMVDKK-LTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYN 881

Query: 183  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            + G   KM S+   M+ R      + Y ++   + K G   +  +   K    G+K    
Sbjct: 882  QIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDD 941

Query: 243  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
             + +L+    K   I  V  +L ++   ++ L +   N ++  + ++G+ ++  ++   M
Sbjct: 942  VFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVM 1001

Query: 303  KERHCVPDNITFATMI 318
            +    VP +++    I
Sbjct: 1002 QRLGWVPTSLSLTDSI 1017



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 102/213 (47%), Gaps = 8/213 (3%)

Query: 7    CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            CK  +  +A  LF+ M+   L P++  YT L+ AYG++ +++EA     DM++  +  P+
Sbjct: 811  CKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMET-RNIIPN 869

Query: 65   VYTYSILIKSCTKF-HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESS 122
              TY+ L+ S  +  +RF +I  +  +M   GI C A+ Y  +   Y K  K  E ++  
Sbjct: 870  TLTYTSLLLSYNQIGNRFKMIS-LFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLL 928

Query: 123  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              ++VE      D+F  +++I        I  + +  +E     +    +T N L   + 
Sbjct: 929  NKSLVEGIKLEDDVF--DALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFY 986

Query: 183  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            ++G  D+   V+  MQ+  + PT ++    I T
Sbjct: 987  KSGNEDEASKVLGVMQRLGWVPTSLSLTDSIST 1019



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 5/170 (2%)

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           ++ + + Y EF      +++   +I    +   G  ++  SV        FFPT++  N 
Sbjct: 157 LDSLVRCYREFG----GSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNN 212

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           ++    KA  +    + +  M    + P+  TY +++ A+ K G ++K   +L ++E  +
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEME-KE 271

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
              +   +N  I    Q G V++  E+   M E+   PD  T+  ++  +
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGF 321


>gi|168045822|ref|XP_001775375.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673320|gb|EDQ59845.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 406

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 155/333 (46%), Gaps = 14/333 (4%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL----LDEAFSTINDMK 56
           +V +GK KQ   A   F+ +  +G +P   +Y AL++A+ Q+        +A     +MK
Sbjct: 47  IVTMGKAKQLRMAVWFFKEVKRNGHRPDTSLYNALITAHLQAEDKRIGFAKALQLFEEMK 106

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           + ++CKPD+ TY+IL++   +      +E+   EM    I  + ++YN +I  YGKA   
Sbjct: 107 TKANCKPDLVTYNILLRGSAQVRDILQVERFFEEMEVEKIHPNLISYNGVIGAYGKAGDL 166

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF----NLMGVKADIQ 172
            +ME +   M       PD  T N++I +YG   +  KME+ +       N    + D +
Sbjct: 167 VQMEKTLFTMRILKHIKPDTVTSNTLIESYGYGRDFVKMEQVFKSMTAAKNKQTSRPDAK 226

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T NIL  SY R G   KM      M+   F   + +Y I++  +G+ G I  M E F +M
Sbjct: 227 TYNILMASYARLGEVGKMEWSCSRMEAANFKLNLRSYEILMTGYGEVGAIASMSECFYQM 286

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG---QA 289
              GM+P   T  +++ AY K     + + +L           T  +  ++ AY    ++
Sbjct: 287 LQAGMQPQKSTLNAMLRAYCKHNCFEEAEELLNDALGWQTRPRTSSYLILLRAYAKERRS 346

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
            DVE + E    M +    P   TF   +++++
Sbjct: 347 SDVEMLTE---RMAKVGIAPCAATFLEALESFS 376



 Score = 45.8 bits (107), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  ML  G++P      A++ AY +    +EA   +ND       +P   +Y IL+++  
Sbjct: 283 FYQMLQAGMQPQKSTLNAMLRAYCKHNCFEEAEELLNDALGW-QTRPRTSSYLILLRAYA 341

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           K  R   +E +   M+ +GI   A T+   ++ +  +  +EE  +  +A  +S G
Sbjct: 342 KERRSSDVEMLTERMAKVGIAPCAATFLEALESFSLSCGYEEKLTESAAEAQSDG 396


>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
 gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
          Length = 651

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 153/330 (46%), Gaps = 6/330 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + E M   G+ P+  +Y  ++  Y + G    AF    DM S +  KPD+  Y+IL+ + 
Sbjct: 312 ILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVS-AGLKPDIVIYNILVHAF 370

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R D    +L  +    +  +  TY +I+DGY K    ++    F   +++ G  P 
Sbjct: 371 CKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFD-RIKTAGLRPG 429

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + + NS++S    +  +E      NE    GV    +    LT+ Y R G  +K   V  
Sbjct: 430 VVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQ 489

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV-SAYSKA 254
            M+K      +V Y  +++    +G +    E F+++   G+K N ITYC+++  AY++A
Sbjct: 490 RMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYARA 549

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM---KERHCVPDN 311
           G + + + ++  +E      DT  +N +I+AYG +G  E M  L   M     +   PD 
Sbjct: 550 GRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDI 609

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            T+ T+IQ Y   G    A+ L   +  +K
Sbjct: 610 GTYNTLIQVYAQAGFIPRAEELFQGLARLK 639



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 156/333 (46%), Gaps = 19/333 (5%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + +  E A    E MLS G++ +  V+ +++S Y  +G  + A       K+  +  P  
Sbjct: 178 EARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKA-ENLVPGG 236

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             Y+ ++++  +    + +E +LA+M   G + +   Y T+++G+ + +  E+  S F  
Sbjct: 237 IVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHR 296

Query: 126 M------------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 167
           +                  ++  G  P+      ++  Y   G+     K + +    G+
Sbjct: 297 LKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGL 356

Query: 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           K DI   NIL  ++ +AG  DK   V++ ++     PT+ TY  +++ + K G+I+K  E
Sbjct: 357 KPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALE 416

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
            F ++K  G++P  ++Y SL+S  +KA  +     +L ++  + V+     +  +   Y 
Sbjct: 417 VFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYA 476

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           + GDVEK   +F  MK+ +   D + +  +++A
Sbjct: 477 RTGDVEKAFGVFQRMKKENLAIDIVAYGALLKA 509



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 107/214 (50%), Gaps = 6/214 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +Q E A L+   ML++G+ PS  +YTAL   Y ++G +++AF     MK   +   
Sbjct: 440 LAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKK-ENLAI 498

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG-YGKAKKFEEMESS 122
           D+  Y  L+K+C          ++  +++  G++ + +TY T++DG Y +A + EE E  
Sbjct: 499 DIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEEL 558

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF---NLMGVKADIQTLNILTK 179
            SAM E  G  PD    NS+I+AYG SG  E ME    +    +    K DI T N L +
Sbjct: 559 VSAM-ERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQ 617

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
            Y +AG   +   +   + +    P   T+  ++
Sbjct: 618 VYAQAGFIPRAEELFQGLARLKLVPDATTWTALM 651



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG + K+ +    + K    P +  Y ++++ + + G        F+ M+   +KPN   
Sbjct: 113 AGNWHKIVNAFQVIDK----PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHI 168

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL+ AY++A  +    +   ++ +  + L+   F  IIS Y  AG+ E     F   K
Sbjct: 169 YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFK 228

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             + VP  I + +++QAY   G  E  + L  +M
Sbjct: 229 AENLVPGGIVYNSIVQAYCQAGNMETVEALLAQM 262



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 103/253 (40%), Gaps = 21/253 (8%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           Y  ++D Y +        ++F AM  S    P++    S+I AY  + ++E       E 
Sbjct: 134 YGLLVDFYARHGDKVAARATFEAMRASH-IKPNVHIYTSLIHAYAEARDMEGAVACTEEM 192

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              G++ +      +   Y  AG  +      +  +     P  + YN +++ + +AG++
Sbjct: 193 LSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNM 252

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYS-------------------KAGLIMKVDSI 263
           E +E    +M+  G + N   Y ++++ ++                   +AG + K   I
Sbjct: 253 ETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDI 312

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L +++   V  +   +  I+  Y + GD     +++  M      PD + +  ++ A+  
Sbjct: 313 LEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCK 372

Query: 324 LG-MTEAAQNLEN 335
            G M +A   LEN
Sbjct: 373 AGRMDKALGVLEN 385



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 4/157 (2%)

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
           ++GN  K+    N F ++  K  ++   +L   Y R G     R+  + M+     P V 
Sbjct: 112 DAGNWHKI---VNAFQVID-KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVH 167

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            Y  +I  + +A  +E      ++M  +G++ N   +CS++S Y+ AG     +    + 
Sbjct: 168 IYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKF 227

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           +  +++     +N I+ AY QAG++E +  L   M+E
Sbjct: 228 KAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEE 264


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 165/334 (49%), Gaps = 4/334 (1%)

Query: 7    CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            CKQ +  +A  L +   S G+     +Y +L+       L+D A     +MK +  C PD
Sbjct: 856  CKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELG-CGPD 914

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +TY++L+ +  K  R + + K+  EM   G E + VTYNTII G  K+++ E+    + 
Sbjct: 915  EFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYY 974

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             ++ S G  P   T   ++     +G IE  E  +NE    G KA+    NIL   +  A
Sbjct: 975  NLM-SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIA 1033

Query: 185  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
            G  +K+  +   M  +   P + +Y I+I+T  KAG +     YF+++   G++P+ ITY
Sbjct: 1034 GNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITY 1093

Query: 245  CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
              L+    K+  + +  S+  +++   ++ +   +N +I   G+AG   + G+++  +  
Sbjct: 1094 NLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLT 1153

Query: 305  RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +   P+  T+  +I+ Y+  G T++A     +MI
Sbjct: 1154 KGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMI 1187



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 147/309 (47%), Gaps = 2/309 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A  ++ VM+ DG+ PSV  Y+ L+ A+G+   ++     + +M++    KP+VY+Y+I
Sbjct: 302 REALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEA-HGVKPNVYSYTI 360

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            I+   +  RFD   +ILA+M   G +   +T+  +I     A +  + +  F  M +S 
Sbjct: 361 CIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 420

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T  +++  +G++G+ + + + +N     G   ++     +  +  + G   + 
Sbjct: 421 Q-KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 479

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + D M+++   P   +YN +I  F KA       E FK M   G KPN  T+   ++ 
Sbjct: 480 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINY 539

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K+G  +K       +++  ++ D    N ++    ++G +     +F  +K     PD
Sbjct: 540 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 599

Query: 311 NITFATMIQ 319
            IT+  MI+
Sbjct: 600 TITYTMMIK 608



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 161/371 (43%), Gaps = 35/371 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV  GK +  E    L   M + G+KP+V  YT  +   GQ+   DEA+  +  M++   
Sbjct: 327 MVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMEN-EG 385

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG--------- 111
           CKPDV T+++LI+      R    + +  +M     +   VTY T++D +G         
Sbjct: 386 CKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVM 445

Query: 112 ------KAKKFEEMESSFSAMVES-------------------GGCHPDIFTLNSMISAY 146
                 KA  + +   +++A++++                    G  P+ ++ NS+IS +
Sbjct: 446 EIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGF 505

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +       + +   ++ G K +  T  +    YG++G   K     + M+ +   P V
Sbjct: 506 LKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDV 565

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V  N V+    K+G +   +  F ++K  G+ P++ITY  ++   SKA    +   I   
Sbjct: 566 VAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYD 625

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +  ++ + D    N +I    +AG  ++   +F  +KE +  P + T+ T++      G 
Sbjct: 626 MIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGK 685

Query: 327 TEAAQNLENKM 337
            +   +L  +M
Sbjct: 686 VKEVMHLLEEM 696



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 146/303 (48%), Gaps = 2/303 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++  M +DG   +V  YTA++ A  Q G + EA    ++MK      P+ Y+Y+ LI   
Sbjct: 447 IWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQ-KGIVPEQYSYNSLISGF 505

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  RF    ++   M   G + +  T+   I+ YGK+ +  +    +  M +S G  PD
Sbjct: 506 LKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELM-KSKGIVPD 564

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +   N+++     SG +   ++ ++E   MGV  D  T  ++ K   +A  +D+   +  
Sbjct: 565 VVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFY 624

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M +    P V+  N +I+T  KAG  ++    F ++K   ++P   TY +L++   + G
Sbjct: 625 DMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREG 684

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +V  +L ++ +S+   +   +N I+    + G V    ++  +M  + C+PD  ++ 
Sbjct: 685 KVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYN 744

Query: 316 TMI 318
           T+I
Sbjct: 745 TVI 747



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 142/328 (43%), Gaps = 2/328 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A +   VM   G+  +   Y  LV    +SG   EA      M  V    P V TYS+L+
Sbjct: 269 APVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVM-MVDGVVPSVRTYSVLM 327

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
            +  K    + +  +L EM   G++ +  +Y   I   G+AK+F+E     + M E+ GC
Sbjct: 328 VAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKM-ENEGC 386

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PD+ T   +I    ++G I   +  + +      K D  T   L   +G  G    +  
Sbjct: 387 KPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVME 446

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           + + M+   +   VV Y  VI+   + G + +  E F +MK +G+ P   +Y SL+S + 
Sbjct: 447 IWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFL 506

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           KA        + + ++      +       I+ YG++G+  K  + +  MK +  VPD +
Sbjct: 507 KADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVV 566

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIAM 340
               ++      G    A+ + +++ AM
Sbjct: 567 AGNAVLFGLAKSGRLGMAKRVFHELKAM 594



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 2/267 (0%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K ++ EQA  L+  ++S G  P+   Y  L+    ++G +++A +  N+M     CK 
Sbjct: 960  LVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG-CKA 1018

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            +   Y+IL+         + +  +  +M   GI     +Y  IID   KA +  +  + F
Sbjct: 1019 NCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYF 1078

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              ++E G   PD+ T N +I   G S  +E+    +NE    G+  ++ T N L    G+
Sbjct: 1079 RQLLEMG-LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1137

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            AG   +   + + +  + + P V TYN +I  +  +G  +     + +M   G  PNS T
Sbjct: 1138 AGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1197

Query: 244  YCSLVSAYSKAGLIMKVDSILRQVENS 270
              S  S+    G + K  +  R   N+
Sbjct: 1198 DSSNCSSPEAVGTVRKQITSHRSYHNA 1224



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/257 (20%), Positives = 111/257 (43%), Gaps = 8/257 (3%)

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
           FD++++ +       ++ +  T+  I  G G          +   M E+G    + +T N
Sbjct: 238 FDVMQRQI-------VKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAG-IVLNAYTYN 289

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            ++     SG   +  + Y    + GV   ++T ++L  ++G+    + +  ++  M+  
Sbjct: 290 GLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAH 349

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P V +Y I I   G+A   ++      KM++ G KP+ IT+  L+     AG I   
Sbjct: 350 GVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDA 409

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +  +++ SD   D   +  ++  +G  GD + + E++  MK      + + +  +I A
Sbjct: 410 KDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDA 469

Query: 321 YNALGMTEAAQNLENKM 337
              +G    A  + ++M
Sbjct: 470 LCQVGRVFEALEMFDEM 486



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 82/200 (41%)

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           + N M+      G +  M + ++      VKA++ T   +    G  G        +  M
Sbjct: 217 SCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVM 276

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++        TYN ++    K+G   +  E ++ M   G+ P+  TY  L+ A+ K   +
Sbjct: 277 KEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDV 336

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
             V  +LR++E   V  +   +   I   GQA   ++   +   M+   C PD IT   +
Sbjct: 337 ETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVL 396

Query: 318 IQAYNALGMTEAAQNLENKM 337
           IQ     G    A+++  KM
Sbjct: 397 IQVLCDAGRISDAKDVFWKM 416



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/370 (18%), Positives = 140/370 (37%), Gaps = 37/370 (10%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            LG+  + ++   L E M      P++  Y  ++    ++G +++A   +  M +   C P
Sbjct: 680  LGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSM-TTKGCIP 738

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE----- 118
            D+ +Y+ +I    K  R++    I  +M  + I   A T  TI+  + K    +E     
Sbjct: 739  DLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYA-TLCTILPSFVKIGLMKEALHII 797

Query: 119  -------------------MES-----------SFSAMVESGGCHPDIFTLNSMISAYGN 148
                               ME             F+ ++ S G   D F L  +I     
Sbjct: 798  KDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCK 857

Query: 149  SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
                 +  +   +F   GV       N L        + D    +   M++    P   T
Sbjct: 858  QKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFT 917

Query: 209  YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
            YN++++  GK+  IE+M +  ++M  +G +   +TY +++S   K+  + +   +   + 
Sbjct: 918  YNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLM 977

Query: 269  NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
            +         +  ++    +AG +E    LF  M E  C  +   +  ++  +   G TE
Sbjct: 978  SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTE 1037

Query: 329  AAQNLENKMI 338
               +L   M+
Sbjct: 1038 KVCHLFQDMV 1047



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 7/209 (3%)

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
           ++++ SA G +  +E+      +  +    A    +  L + +GR G    M  V D MQ
Sbjct: 186 IHALRSADGPAEALERFRSAARKPRVAQTTASCNYMLELMRGHGRVG---DMAEVFDVMQ 242

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           ++     V T+  +    G  G +         MK  G+  N+ TY  LV    K+G   
Sbjct: 243 RQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDR 302

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +   + R +    V+     ++ ++ A+G+  DVE +  L   M+     P+  ++   I
Sbjct: 303 EALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICI 362

Query: 319 QAYNALGMTEAAQNLENKMIAMKENSGKK 347
           +        + A  +  KM    EN G K
Sbjct: 363 RVLGQAKRFDEAYRILAKM----ENEGCK 387


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 152/327 (46%), Gaps = 3/327 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  M   G+KP V  Y  ++ A  ++  +D+A   +  M +    +PD  TYS +
Sbjct: 283 KACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQM-TTDGAQPDTVTYSCM 341

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R     K+  EM   G+  + VT N+ +    K  + +E    F +M   G 
Sbjct: 342 IHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGH 401

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PDIF+  +++  Y + G    M   +N     G+ A+     IL  +Y + GM D   
Sbjct: 402 -KPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAM 460

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +   MQ++   P VVTY+ VI TF + G +    E F +M  RG++PN+  Y S++  +
Sbjct: 461 LIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGF 520

Query: 252 SKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
              G ++K   ++ ++ N  +   D  FF+ +I++  + G V    ++F    +    P 
Sbjct: 521 CMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPG 580

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            ITF ++I  Y  +G  + A  + + M
Sbjct: 581 VITFNSLIDGYCLVGKMDKAFKILDAM 607



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 152/336 (45%), Gaps = 3/336 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + ++P+    LF  +L  GLK        L+     +   +EA + +    S   C P+ 
Sbjct: 169 RARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNA 228

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSF 123
            +YSI++K+            +L  M+  G  CS   V Y+T+I G+    +  +  S F
Sbjct: 229 VSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLF 288

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M   G   PD+ T N +I A   +  ++K E    +    G + D  T + +   Y  
Sbjct: 289 HEMTRQG-VKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYAT 347

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   +   +   M+KR   P +VT N  + +  K G  ++  E+F  M  +G KP+  +
Sbjct: 348 LGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFS 407

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           YC+L+  Y+  G    +  +   ++++ +  +   F  +I AY + G V+    +F  M+
Sbjct: 408 YCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQ 467

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           ++   PD +T++T+I  ++ +G    A    N+M+A
Sbjct: 468 QQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVA 503



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 157/358 (43%), Gaps = 38/358 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M S+G+  +  V+T L+ AY + G++D+A     +M+      PDV TYS +I + 
Sbjct: 427 LFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQ-QGVSPDVVTYSTVISTF 485

Query: 76  TKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
           ++  R  D +EK   +M   GI+ +   Y++II G+       + +   S M+  G   P
Sbjct: 486 SRMGRLTDAMEK-FNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRP 544

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI   +S+I++    G +      ++    +G +  + T N L   Y   G  DK   ++
Sbjct: 545 DIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKIL 604

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M+     P +VTYN +++ + K G I      F++M+ +G+KPN++TY  +++   +A
Sbjct: 605 DAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRA 664

Query: 255 GLIMKVDS-----------------------------------ILRQVENSDVILDTPFF 279
           G  +                                       + +++   +V       
Sbjct: 665 GRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITIL 724

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           N +I+A  +    E+  ELF T+     +P+  T+  MI      G  E A N+ + M
Sbjct: 725 NTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSM 782



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 143/342 (41%), Gaps = 22/342 (6%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM-KSVSDCKPDVY 66
           +  E  ++L   M   G  P+   Y+ ++ A   + +   A   +  M K    C PDV 
Sbjct: 207 RTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVV 266

Query: 67  TYSILI----------KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            YS +I          K+C+ FH          EM+  G++   VTYN IID   KA+  
Sbjct: 267 AYSTVIHGFFNEGETGKACSLFH----------EMTRQGVKPDVVTYNLIIDALCKARAM 316

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           ++ E     M   G   PD  T + MI  Y   G +++  K + E    G+  +I T N 
Sbjct: 317 DKAELVLRQMTTDGA-QPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNS 375

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
              S  + G   +     D M  +   P + +Y  ++  +   G    M   F  MK  G
Sbjct: 376 FLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNG 435

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           +  N   +  L+ AY+K G++     I  +++   V  D   ++ +IS + + G +    
Sbjct: 436 IAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAM 495

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           E F  M  R   P+   ++++IQ +   G    A+ L ++MI
Sbjct: 496 EKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMI 537



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 150/374 (40%), Gaps = 44/374 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A L+   M +DG +P    Y+ ++  Y   G L EA     +MK      P
Sbjct: 310 LCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKK-RGLIP 368

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ T +  + S  K  R     +    M+  G +    +Y T++ GY     F +M   F
Sbjct: 369 NIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLF 428

Query: 124 SAMVESG---GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           ++M  +G    CH  +FT+  +I AY   G ++     + E    GV  D+ T + +  +
Sbjct: 429 NSMKSNGIAANCH--VFTI--LIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVIST 484

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM--- 237
           + R G         + M  R   P    Y+ +I+ F   G + K +E   +M ++G+   
Sbjct: 485 FSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRP 544

Query: 238 ---------------------------------KPNSITYCSLVSAYSKAGLIMKVDSIL 264
                                            +P  IT+ SL+  Y   G + K   IL
Sbjct: 545 DIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKIL 604

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             +E   V  D   +N ++  Y + G +     LF  M+ +   P+ +T+  M+      
Sbjct: 605 DAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRA 664

Query: 325 GMTEAAQNLENKMI 338
           G T AA+   ++MI
Sbjct: 665 GRTVAARKKFHEMI 678



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 122/286 (42%), Gaps = 16/286 (5%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F++    G +P V  + +L+  Y   G +D+AF  ++ M+ V   +PD+ TY+ L+   
Sbjct: 568 IFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVG-VEPDIVTYNTLLDGY 626

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R +    +  EM   G++ + VTY  ++ G  +A +       F  M+ESG     
Sbjct: 627 FKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG----- 681

Query: 136 IFTLNSMISAYG-------NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                  +S YG        +   ++    + +   M VK  I  LN +  +  +    +
Sbjct: 682 ---TTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKE 738

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           + + +   +      P   TY ++I    K G +E     F  M+  G+ P S     ++
Sbjct: 739 EAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRII 798

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
               + G I K  + L +V+   ++L+    + ++S + + G  ++
Sbjct: 799 RMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKGKYQE 844


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 165/352 (46%), Gaps = 45/352 (12%)

Query: 5   GKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK   P++A  +F+  L  GL+PS+ +Y  L+    Q GL+  A   +N+M   + C 
Sbjct: 339 GFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAE-NGCL 397

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+++TY+++I    K                  + C +   + + D   K          
Sbjct: 398 PNIWTYNLVINGLCK------------------MGCVSDASHLVDDAIAK---------- 429

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
                   GC PDIFT N++I  Y     ++   +  N     G+  D+ T N L     
Sbjct: 430 --------GCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLC 481

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG  +++  +   M+++   P ++TYNI++++  KA  + +  +   +MK +G+KP+ +
Sbjct: 482 KAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVV 541

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           ++ +L + + K G I     + R++E   DV   T  +N I+SA+ +  ++    +LF  
Sbjct: 542 SFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSV 601

Query: 302 MKERHCVPDNITFATMIQAYNALG-MTEA----AQNLENKMIAMKENSGKKL 348
           MK   C PDN T+  +I  +  +G +T+      +N+E + I      G+ L
Sbjct: 602 MKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVL 653



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 149/324 (45%), Gaps = 17/324 (5%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + + A  LF+ ML+  L P V  +  LV    + GL+ E+   +  +     C P+++T+
Sbjct: 196 EHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVC-PNLFTF 254

Query: 69  SILIKSCTKFHRFDL---------IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +I ++   +    D           E+ L +M   G E   +TYN+IIDGY K    ++ 
Sbjct: 255 NIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDA 314

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                  V   G  PD FT  S+I+ +   G+ ++    + +    G++  I   N L K
Sbjct: 315 NRVLKDAVFK-GFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIK 373

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G+      +M+ M +    P + TYN+VI    K G +            +G  P
Sbjct: 374 GLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPP 433

Query: 240 NSITYCSLVSAYSKAGLIMKVDS---ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           +  TY +L+  Y K    +K+DS   ++ ++ +  +  D   +N +++   +AG  E++ 
Sbjct: 434 DIFTYNTLIDGYCKQ---LKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVM 490

Query: 297 ELFLTMKERHCVPDNITFATMIQA 320
           E+F  M+E+ C P+ IT+  ++ +
Sbjct: 491 EIFKAMEEKGCTPNIITYNIIVDS 514



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 156/377 (41%), Gaps = 46/377 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  + ++A   FE M      PSV  + A+++   + G  ++A      M+     + D
Sbjct: 87  GRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRD-RGVQSD 145

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VYTY+I IKS  K  R     ++L  M  LG + +AV Y T++ G   + + +     F 
Sbjct: 146 VYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFD 205

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+    C PD+   N ++      G + + E+   +    GV  ++ T NI  +   R 
Sbjct: 206 EMLARCLC-PDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCRE 264

Query: 185 GMYDK------MRSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
           G  D+      +    ++++K     F P  +TYN +I+ + K G ++      K    +
Sbjct: 265 GALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFK 324

Query: 236 GMKPNSITYCSLVSAY-----------------------------------SKAGLIMKV 260
           G KP+  TYCSL++ +                                   S+ GLI+  
Sbjct: 325 GFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPA 384

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             ++ ++  +  + +   +N +I+   + G V     L      + C PD  T+ T+I  
Sbjct: 385 LQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDG 444

Query: 321 YNALGMTEAAQNLENKM 337
           Y      ++A  + N+M
Sbjct: 445 YCKQLKLDSATEMVNRM 461



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 133/354 (37%), Gaps = 66/354 (18%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A    N  KS    K    TY  +++       F+ +EK+L+EM            N +
Sbjct: 22  KALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEM-------RENVNNAL 74

Query: 107 IDG--------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           ++G        YG+  K +E   +F  M +   C P + + N++++     G   +  K 
Sbjct: 75  LEGAYIEAMKNYGRKGKVQEAVDTFERM-DFYNCDPSVHSHNAIMNILVEFGYHNQAHKV 133

Query: 159 YNEFNLMGVKADIQTLNILTKSYGR------------------------------AGMY- 187
           Y      GV++D+ T  I  KS+ +                              AG+Y 
Sbjct: 134 YMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYD 193

Query: 188 ----DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               D  R + D M  R   P VV +N ++    K G + + E    K+  RG+ PN  T
Sbjct: 194 SGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFT 253

Query: 244 YCSLVSAYSKAGL---------IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           +   V    + G          +++ +  LR++ N     D   +N II  Y + G V+ 
Sbjct: 254 FNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQD 313

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 348
              +      +   PD  T+ ++I  +   G  + A      M   K+  GK L
Sbjct: 314 ANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRA------MAVFKDGLGKGL 361



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 107/249 (42%), Gaps = 19/249 (7%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   + A+ +   M S G+ P V  Y  L++   ++G  +E       M+    C 
Sbjct: 444 GYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEE-KGCT 502

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-------GKAKK 115
           P++ TY+I++ S  K  + +    +L EM   G++   V++ T+  G+       G  + 
Sbjct: 503 PNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQL 562

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           F  ME  +        CH    T N ++SA+    N+    K ++     G   D  T  
Sbjct: 563 FRRMEKQYDV------CHTTA-TYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYR 615

Query: 176 ILTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           ++   + + G +    + +++ M+KR F P++ T+  V+        + +       M  
Sbjct: 616 VVIDGFCKMGNITQGYKFLLENMEKR-FIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQ 674

Query: 235 RGMKPNSIT 243
           +G+ P ++ 
Sbjct: 675 KGIVPETVN 683



 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K+  +A  L   M S GLKP V  +  L + + + G +D A+     M+   D   
Sbjct: 515 LCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCH 574

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112
              TY+I++ + ++    ++  K+ + M   G +    TY  +IDG+ K
Sbjct: 575 TTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCK 623


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 162/357 (45%), Gaps = 38/357 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSA----------------------------YG-- 40
           E+A  LF+ M++ G+ P    Y +L+                              YG  
Sbjct: 367 EKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTA 426

Query: 41  -----QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 95
                 SG LD A++ + +M + S C+P+V  Y+ LIK+  +  RF    ++L EM   G
Sbjct: 427 VKGMCSSGDLDGAYNIVKEMGA-SGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQG 485

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
           I      YN++I G  KAKK +E  S    MVE+G   PD FT  + IS Y  +G     
Sbjct: 486 IAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENG-FKPDAFTYGAFISGYIEAGEFASA 544

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           +K+  E    GV  +      L   Y + G   +  S    M ++       TY +++  
Sbjct: 545 DKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNG 604

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K G +   EE F +M+ +G+ P+  +Y +L+  +SK G + K  SI  ++  + +  +
Sbjct: 605 LVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSN 664

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQ 331
              +N ++  + ++G++EK  EL   M  +   P+ +T+ T+I  Y   G + EA Q
Sbjct: 665 VIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQ 721



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 151/319 (47%), Gaps = 3/319 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G+ P    Y +L+    ++  +DEA S + +M   +  KPD +TY   I    +  
Sbjct: 481 MREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVE-NGFKPDAFTYGAFISGYIEAG 539

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
            F   +K + EM   G+  + V    +I+ Y K  K  E  S+F +MVE G    D  T 
Sbjct: 540 EFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQG-ILGDAKTY 598

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
             +++    +G +   E+ ++E    G+  D+ +   L   + + G   K  S+ D M +
Sbjct: 599 TVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQ 658

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
                 V+ YN+++  F ++G IEK +E   +M  +G  PN++TYC+++  Y K+G + +
Sbjct: 659 AGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAE 718

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +  +++   ++ D+  +  ++    +  DVE+   +F T  E+ C   +  F  +I 
Sbjct: 719 AFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFET-NEKGCASSSAPFNALIN 777

Query: 320 AYNALGMTEAAQNLENKMI 338
                G TE   ++ N+++
Sbjct: 778 WVFKFGKTELTTDMINRLM 796



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 164/379 (43%), Gaps = 44/379 (11%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ L K K+ ++A      M+ +G KP    Y A +S Y ++G    A   + +M     
Sbjct: 497 IIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGV 556

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL--GIECSAVTYNTIIDGYGKAKKFEE 118
               V    ++ + C K     +IE   A  S +  GI   A TY  +++G  K  K  +
Sbjct: 557 IPNKVLCTGLINEYCKKGK---VIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVND 613

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E  F  M    G  PD+F+  ++I  +   GN++K    ++E    G+ +++   N+L 
Sbjct: 614 AEEIFHEM-RGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLL 672

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + R+G  +K + ++D M  + F P  VTY  +I+ + K+G + +  + F +MK +G+ 
Sbjct: 673 GGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLV 732

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF-------------------- 278
           P+S  Y +LV    +   + +  +I    E        PF                    
Sbjct: 733 PDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMI 792

Query: 279 ------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
                             +N +I    + G++E   ELF  M++ + +P  IT+ +++  
Sbjct: 793 NRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNG 852

Query: 321 YNALGMTEAAQNLENKMIA 339
           Y+ +G      ++ +++IA
Sbjct: 853 YDKMGRRSEMFSVFDEVIA 871



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 160/350 (45%), Gaps = 15/350 (4%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V  GK    E+   +F  M   G+ P V  Y  L+  + + G + +A S  ++M   + 
Sbjct: 605 LVKNGKVNDAEE---IFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQ-AG 660

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
              +V  Y++L+    +    +  +++L EMS  G   +AVTY TIIDGY K+    E  
Sbjct: 661 LTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAF 720

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK- 179
             F  M +  G  PD F   +++       ++E+    + E N  G  +     N L   
Sbjct: 721 QLFDEM-KLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-ETNEKGCASSSAPFNALINW 778

Query: 180 --SYGRAGMY-DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
              +G+  +  D +  +MD    +F  P  VTYNI+I+   K G++E  +E F  M+   
Sbjct: 779 VFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKAN 838

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + P  ITY SL++ Y K G   ++ S+  +V  + +  D   ++ II+A+ + G   K  
Sbjct: 839 LMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKAL 898

Query: 297 ELFLTMKERHCVPDNI-----TFATMIQAYNALGMTEAAQNLENKMIAMK 341
            L   M  ++ V D       T   ++  +  +G  E A+ +   M+ +K
Sbjct: 899 VLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMVRLK 948



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 147/340 (43%), Gaps = 12/340 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  + A+ L   M+S G      +Y   +    + G +++A +  + M +     P
Sbjct: 325 LLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFG-VTP 383

Query: 64  DVYTYSILIKSCTKFHRFDLIEK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
               Y+ LI+    F R   + K   +L E+    I  S  TY T + G   +    +++
Sbjct: 384 GARAYASLIEG---FFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSG---DLD 437

Query: 121 SSFSAMVESG--GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            +++ + E G  GC P++    ++I  +          +   E    G+  D    N L 
Sbjct: 438 GAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLI 497

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               +A   D+ RS +  M +  F P   TY   I  + +AG     ++Y K+M   G+ 
Sbjct: 498 IGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVI 557

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN +    L++ Y K G +++  S  R +    ++ D   +  +++   + G V    E+
Sbjct: 558 PNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEI 617

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  M+ +   PD  ++ T+I  ++ LG  + A ++ ++M+
Sbjct: 618 FHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMV 657



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 117/295 (39%), Gaps = 49/295 (16%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           M++ G C+  + E+A  L + M   G  P+   Y  ++  Y +SG L EAF   ++MK +
Sbjct: 670 MLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMK-L 728

Query: 59  SDCKPDVYTYSILIKSCTKFHRF------------------------------------- 81
               PD + Y+ L+  C + +                                       
Sbjct: 729 KGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELT 788

Query: 82  -DLIEKIL-AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
            D+I +++       G + + VTYN +ID   K    E  +  F  M +     P + T 
Sbjct: 789 TDMINRLMDGSFDKFG-KPNDVTYNIMIDYLCKEGNLEAAKELFHHM-QKANLMPTVITY 846

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            S+++ Y   G   +M   ++E    G++ D    +++  ++ + GM  K   ++D M  
Sbjct: 847 TSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFA 906

Query: 200 RFFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +         ++ T   ++  F K G +E  E+  + M      P+S T   L++
Sbjct: 907 KNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELIN 961



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 124/316 (39%), Gaps = 25/316 (7%)

Query: 29  VDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           V ++  L+  Y + G LDEA   FS+  D+    D  P +   + L+ +  K +R DL  
Sbjct: 152 VLLFGILIDGYIEKGFLDEAVFVFSSTKDLDL--DLVPSLARCNHLLDALLKRNRLDLFW 209

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGK------AK----KFEEMESSFSAMVESG----- 130
            +   M    +     +Y  +I  + +      AK    K EE   + +  V+       
Sbjct: 210 DVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKK 269

Query: 131 -----GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
                G  P   + N +I        +E  +    E N +G+ AD    +IL     +  
Sbjct: 270 SMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGR 329

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D    ++  M    F    + Y+  I    K G +EK +  F  M   G+ P +  Y 
Sbjct: 330 NADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYA 389

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           SL+  + +   + K   +L +++  ++++    +   +     +GD++    +   M   
Sbjct: 390 SLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGAS 449

Query: 306 HCVPDNITFATMIQAY 321
            C P+ + + T+I+ +
Sbjct: 450 GCRPNVVIYTTLIKTF 465



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 120/307 (39%), Gaps = 50/307 (16%)

Query: 45  LDEAFSTINDMKSVSDCK---PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
           +DEA     ++K    CK   P   +Y++LI    K  R +  + +L EM+ +G+    V
Sbjct: 261 VDEAL----ELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNV 316

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
            Y+ +IDG  K +  +        MV S G   D    +  I      G +EK +  ++ 
Sbjct: 317 AYSILIDGLLKGRNADAANGLVHEMV-SHGFSIDPMMYDYFICVMSKEGAMEKAKALFDG 375

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               GV    +    L + + R     K   ++  ++KR    +  TY   ++    +G 
Sbjct: 376 MITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGD 435

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           ++      K+M   G +PN + Y +L+  + +                            
Sbjct: 436 LDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQK--------------------------- 468

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK--MIA 339
             S +G A  V K       M+E+   PD   + ++I     +G+++A +  E +  ++ 
Sbjct: 469 --SRFGDAVRVLK------EMREQGIAPDTFCYNSLI-----IGLSKAKKMDEARSFLLE 515

Query: 340 MKENSGK 346
           M EN  K
Sbjct: 516 MVENGFK 522


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 163/335 (48%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ E        M   G+ P V  Y  L++AY + GLL+EAF  ++ M S    KP
Sbjct: 264 LCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM-SGKGLKP 322

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V+TY+ +I    K  ++   + +L EM  +G+     TYN ++    +     + E  F
Sbjct: 323 CVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIF 382

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  S G  PD+ + +++I     +G +++  K++ +    G+  D     IL   + R
Sbjct: 383 DEM-PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCR 441

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G+  +   V D M ++     VVTYN ++    K   + + +E F +M  RG+ P+  T
Sbjct: 442 NGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYT 501

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +L++ YSK G + K  ++   +   ++  D   +N +I  + +  ++EK+ EL+  M 
Sbjct: 502 FTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMI 561

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            R   P++I++  +I  Y  +G    A  L ++M+
Sbjct: 562 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMV 596



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 160/319 (50%), Gaps = 2/319 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L K    +QA   F  M + GL P   +YT L+  + ++G++ EA    ++M     C 
Sbjct: 403 LLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLE-QGCV 461

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            DV TY+ ++    K       +++  EM+  G+     T+ T+I+GY K     +  + 
Sbjct: 462 LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 521

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M++     PD+ T N++I  +     +EK+ + +N+     +  +  +  IL   Y 
Sbjct: 522 FEMMIQRN-LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYC 580

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G   +   + D M ++ F  T++T N +++ + +AG+  K +E+   M  +G+ P+ I
Sbjct: 581 NMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGI 640

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L++ + K   + +  +++ ++ENS ++ D   +N I++ + + G +++   + L M
Sbjct: 641 TYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKM 700

Query: 303 KERHCVPDNITFATMIQAY 321
            ER   PD  T+ ++I  +
Sbjct: 701 IERGVNPDRSTYTSLINGH 719



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 160/361 (44%), Gaps = 39/361 (10%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F V+ S GL  S++   +L+    + G +D A+    ++   S  + +VYT +I+I +  
Sbjct: 207 FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVR-SGVQVNVYTLNIMINALC 265

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K  + +  +  L++M   G+    VTYNT+I+ Y +    EE      +M    G  P +
Sbjct: 266 KNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM-SGKGLKPCV 324

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-GMYDKMRSVMD 195
           FT N++I+    +G   + +   +E   +G+  D  T NIL     R   M D  R + D
Sbjct: 325 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER-IFD 383

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M  +   P +V+++ +I    K G +++  +YF+ MK+ G+ P+++ Y  L+  + + G
Sbjct: 384 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNG 443

Query: 256 -----------------------------------LIMKVDSILRQVENSDVILDTPFFN 280
                                              ++ + D +  ++    V  D   F 
Sbjct: 444 VMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFT 503

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +I+ Y + G++ K   LF  M +R+  PD +T+ T+I  +      E    L N MI+ 
Sbjct: 504 TLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISR 563

Query: 341 K 341
           +
Sbjct: 564 R 564



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 144/331 (43%), Gaps = 21/331 (6%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           + P+  +++  ++   G+   V++  +LV  YG                   +C  +   
Sbjct: 147 RLPDAQAVILRMVRKSGVS-RVEIVESLVLTYG-------------------NCGSNPLV 186

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           + +L+++  +  +     +    +   G+  S    N+++ G  K    +     +  +V
Sbjct: 187 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 246

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            SG    +++TLN MI+A   +  IE  + + ++    GV  D+ T N L  +Y R G+ 
Sbjct: 247 RSG-VQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 305

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           ++   +MD M  +   P V TYN +I    K G   + +    +M   GM P++ TY  L
Sbjct: 306 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 365

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +    +   +M  + I  ++ +  V+ D   F+ +I    + G +++  + F  MK    
Sbjct: 366 LVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 425

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            PDN+ +  +I  +   G+   A  + ++M+
Sbjct: 426 APDNVIYTILIGGFCRNGVMSEALKVRDEML 456



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML  G+ P    Y  L++ + +   +D AF+ +N M++ S   PDV TY++++   ++  
Sbjct: 630 MLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMEN-SGLLPDVITYNVILNGFSRQG 688

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           R    E I+ +M   G+     TY ++I+G+      +E       M++ G    D F
Sbjct: 689 RMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDKF 746


>gi|255661216|gb|ACU25777.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 426

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   GI    V YN++I+ +GKAK F+E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTIL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG     ++ ++ +     MG++
Sbjct: 122 TMYVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PN+ITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 158/343 (46%), Gaps = 39/343 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P +  Y ++++ +G++ L  EA S I++M+ V+   PD  +YS ++   
Sbjct: 66  IFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMR-VAGVMPDTVSYSTILTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            + H+F     +  EM  +       T N +ID YG+    +E +  F +M    G  P+
Sbjct: 125 VENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + + Y +++ AY 
Sbjct: 241 LIQEMQNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 253 KAGLIMKVDSILRQVENSDVIL-------------------------------DTPFFNC 281
           +AGL+     +L +++  D I                                D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           +I  + +      +GE+F  M+     PD+   A ++ AY  L
Sbjct: 361 MIDLFSKYRKYTNVGEVFEKMRGLGYFPDSNVIALVLNAYGKL 403



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   NSMI+ +G +   ++     +E  + GV  D  + + +   Y 
Sbjct: 67  FSRLKRSG-ITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTILTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+    ++ +  F  M+  G++PN +
Sbjct: 126 ENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRLFWSMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P+ IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G+ P+ + Y S+++ + KA L  +  S++ ++  + V+ DT  ++ I
Sbjct: 61  SKAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLISEMRVAGVMPDTVSYSTI 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E +C+ D  T   MI  Y  L M + A  L
Sbjct: 121 LTMYVENHKFLEALSVFREMREINCLLDLTTCNIMIDVYGQLDMAKEADRL 171


>gi|167998294|ref|XP_001751853.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696951|gb|EDQ83288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 172/373 (46%), Gaps = 43/373 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ +  + AS +F    S  ++P+  V T L++  G    L EA      M+     +P
Sbjct: 183 LGQMRNWDAASRVFRAFRSASVEPNAHVCTTLIAVLGYGRRLPEALKLFRWMEKQGIERP 242

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES-- 121
            +YT++ L+ +C +    D   ++  EM  LG+    +T+  ++     A K++  +S  
Sbjct: 243 -IYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFRGLVSATTAAGKWKAAQSFI 301

Query: 122 --------SFS-------------------------AMVESGGCHPDIFTLNSMISAYGN 148
                   SF+                         AM+E G C P +   N+++ AY  
Sbjct: 302 NLMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQG-CEPRLENYNALLCAYEK 360

Query: 149 SGNIEKMEK---WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           + N E+  +   W  E    G   D  T + L  +   AG  +K  +VM+ M++  F P 
Sbjct: 361 TANWEEAVRTVVWIQE---KGFTPDFITWSSLLGACANAGQAEKAVAVMEKMKENNFTPN 417

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           VV++  +++ + K G+ EK EE F  M + G  PN + + SL+SAY K     +V   + 
Sbjct: 418 VVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAYEKGRQWKRVLYTIE 477

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           + E   V LD   ++  ISA  +AG  +   +    MK+  C P+ +T++++I+AY  +G
Sbjct: 478 KQEELGVKLDVVAWSTTISALAKAGQWQLAEKKIRQMKQSGCQPNIVTYSSLIKAYGDVG 537

Query: 326 MTEAAQNLENKMI 338
           +   A+++   M+
Sbjct: 538 LWNKAESVFKSML 550



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 155/333 (46%), Gaps = 23/333 (6%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M+  G +P ++ Y AL+ AY ++   +EA  T+  ++      PD  T+S L+ +C
Sbjct: 335 LLQAMIEQGCEPRLENYNALLCAYEKTANWEEAVRTVVWIQE-KGFTPDFITWSSLLGAC 393

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               + +    ++ +M       + V++  ++  Y K   +E+ E  F +M+ SG C P+
Sbjct: 394 ANAGQAEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSG-CPPN 452

Query: 136 IFTLNSMISAYGNSGN-------IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
               NS++SAY            IEK E+       +GVK D+   +    +  +AG + 
Sbjct: 453 EVAWNSLLSAYEKGRQWKRVLYTIEKQEE-------LGVKLDVVAWSTTISALAKAGQWQ 505

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
                +  M++    P +VTY+ +I+ +G  G   K E  FK M   G++P+S   C+L+
Sbjct: 506 LAEKKIRQMKQSGCQPNIVTYSSLIKAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALL 565

Query: 249 SAYSKAGLIMKV----DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            AY+K   + KV    DS++ +     +  D   +  I  A    G+ ++  +    M+ 
Sbjct: 566 RAYAKGRQLDKVMFFFDSMMPRY---GIKPDKYAYAAIFWACWTCGEWQRAADYMENMEA 622

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             C PD + + T+I  Y A G  + A  +  KM
Sbjct: 623 AGCTPDTMIYTTLITMYEAHGQVDKAMEILKKM 655



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 63/134 (47%)

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V + N+V+   G+  + +     F+  +   ++PN+    +L++       + +   + R
Sbjct: 173 VRSMNVVVWQLGQMRNWDAASRVFRAFRSASVEPNAHVCTTLIAVLGYGRRLPEALKLFR 232

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            +E   +      FN ++ A G+ G  +   ELF  MKE    PDNITF  ++ A  A G
Sbjct: 233 WMEKQGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFRGLVSATTAAG 292

Query: 326 MTEAAQNLENKMIA 339
             +AAQ+  N M A
Sbjct: 293 KWKAAQSFINLMQA 306



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 100/254 (39%), Gaps = 38/254 (14%)

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           +V   G   D+ ++N ++   G   N +   + +  F    V+ +      L    G   
Sbjct: 163 VVHETGLRVDVRSMNVVVWQLGQMRNWDAASRVFRAFRSASVEPNAHVCTTLIAVLGYGR 222

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              +   +  +M+K+     + T+N ++   G+ G  +   E F++MK  G+ P++IT+ 
Sbjct: 223 RLPEALKLFRWMEKQGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITFR 282

Query: 246 SLVSAYSKAGLIMKVDSIL-------------------------RQVENSDVILDTPF-- 278
            LVSA + AG      S +                         R    S  +L      
Sbjct: 283 GLVSATTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIEQ 342

Query: 279 --------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
                   +N ++ AY +  + E+     + ++E+   PD IT+++++ A    G  E A
Sbjct: 343 GCEPRLENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAGQAEKA 402

Query: 331 QNLENKMIAMKENS 344
             +  K   MKEN+
Sbjct: 403 VAVMEK---MKENN 413



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 42/99 (42%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F+ ML +G++P      AL+ AY +   LD+     + M      KPD Y Y+ +
Sbjct: 541 KAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFDSMMPRYGIKPDKYAYAAI 600

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
             +C     +      +  M   G     + Y T+I  Y
Sbjct: 601 FWACWTCGEWQRAADYMENMEAAGCTPDTMIYTTLITMY 639


>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 426

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 154/331 (46%), Gaps = 35/331 (10%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 57
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 58  --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M++RG++PNSITY +++S +SK G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYEKA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           G V     L   +K    +P +I    ++ A
Sbjct: 303 GLVAHAKRLLHELKRPDNIPRDIAIHILVGA 333



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 131/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PDI   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  ++ +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKL 280



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/362 (20%), Positives = 152/362 (41%), Gaps = 74/362 (20%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  + K G +++    F+K++  G+  + + Y +++ AY 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 253 K-------------------------------AGLIMKVDSILRQVENSDVILDTPFFN- 280
           K                               AG I +   + RQ  ++  + D   F  
Sbjct: 301 KAGLVAHAKRLLHELKRPDNIPRDIAIHILVGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 281 ----------------------------------CIISAYGQAGDVEKMGELFLTMKERH 306
                                              I++AYG+  + +K  ++++ M+E  
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVG 420

Query: 307 CV 308
           CV
Sbjct: 421 CV 422



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 103/263 (39%), Gaps = 33/263 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 160 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 218

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  + K  K +     F 
Sbjct: 219 VVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWSKVGKLDRAAMLFQ 278

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN-------------LMGVKA-- 169
            +  S G   D     +MI AY  +G +   ++  +E               L+G     
Sbjct: 279 KL-RSSGVDIDQVLYQTMIVAYEKAGLVAHAKRLLHELKRPDNIPRDIAIHILVGAGRIE 337

Query: 170 ----------------DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                           DI     +   + +   Y  +  V D M    +FP      +++
Sbjct: 338 EATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALIL 397

Query: 214 ETFGKAGHIEKMEEYFKKMKHRG 236
             +GK    +K  + + +M+  G
Sbjct: 398 NAYGKLHEFDKANDVYMEMQEVG 420



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 831

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 156/333 (46%), Gaps = 8/333 (2%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P++A  +F  ++ +G KPS+  YT LV+A  +        S I+ ++  +  +PD   +
Sbjct: 334 RPQEAHSIFNTLIEEGHKPSIITYTTLVTALTRQKHFHSLLSLISKVQK-NGLRPDTILF 392

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I + ++    D   KI  +M   G + +A T+NT+I GYGK  K EE       M+ 
Sbjct: 393 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLR 452

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                P+  T N ++ A+ N   IE+      +    GVK D  T N L ++Y R G   
Sbjct: 453 DEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIG--- 509

Query: 189 KMRSVMDFMQKRFFF----PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              +  D +  R       P V T   ++  + + G +E+   +F +MK  G+ PN   +
Sbjct: 510 STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVF 569

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+  +     +  V  ++  +E   V  D   F+ +++A+   GD+++  E++  M E
Sbjct: 570 NSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLE 629

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               PD   F+ + + Y   G  E A+ + N+M
Sbjct: 630 GGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 662



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 149/312 (47%), Gaps = 1/312 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA  +FE M   G KP+   +  L+  YG+ G L+E+   +  M      +P+  T +I
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNI 465

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++     + +    I+ +M   G++  AVT+NT+   Y +       E      +   
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHN 525

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T  ++++ Y   G +E+  +++     +GV  ++   N L K +      D +
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 585

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V+D M++    P VVT++ ++  +   G +++ EE ++ M   G+ P+   +  L   
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKG 645

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y++AG   K + IL Q+    V  +   +  IIS +  AG+++K  +++  M+    +  
Sbjct: 646 YARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYNKMRGSVGLSP 705

Query: 311 NI-TFATMIQAY 321
           N+ T+ T+I  +
Sbjct: 706 NLTTYETLIWGF 717



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 162/328 (49%), Gaps = 5/328 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           GK  + E++S L E+ML D  L+P+      LV A+     ++EA++ +  M+S    KP
Sbjct: 435 GKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFG-VKP 493

Query: 64  DVYTYSILIKSCTKFHRFDLIEK-ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           D  T++ L ++ ++       E  I+  M +  ++ +  T  TI++GY +  K EE    
Sbjct: 494 DAVTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRF 553

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M E G  HP++F  NS+I  + N  +++ + +  +     GVK D+ T + L  ++ 
Sbjct: 554 FYRMKELG-VHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWS 612

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G   +   +   M +    P +  ++I+ + + +AG  EK E+   +M+  G++PN +
Sbjct: 613 SVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVV 672

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            Y  ++S +  AG + K   +  ++  S  +  +   +  +I  +G+A    K  EL   
Sbjct: 673 IYTQIISGWCSAGEMKKAMQVYNKMRGSVGLSPNLTTYETLIWGFGEAKQPWKAEELLKE 732

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEA 329
           M+E++ VP   T   +   + ++G++ +
Sbjct: 733 MEEKNVVPTRKTMQLIADGWKSIGVSNS 760



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 149/313 (47%), Gaps = 6/313 (1%)

Query: 29  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88
           V   T L++   + G   EA S  N +      KP + TY+ L+ + T+   F  +  ++
Sbjct: 319 VRSRTKLMNGLIERGRPQEAHSIFNTLIEEGH-KPSIITYTTLVTALTRQKHFHSLLSLI 377

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           +++   G+    + +N II+   ++   ++    F  M ESG C P   T N++I  YG 
Sbjct: 378 SKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFEKMKESG-CKPTASTFNTLIKGYGK 436

Query: 149 SGNIEKMEKWYNEFNLMG--VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
            G +E+  +   E  L    ++ + +T NIL +++      ++  +++  MQ     P  
Sbjct: 437 IGKLEESSRLL-EMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSFGVKPDA 495

Query: 207 VTYNIVIETFGKAGHIEKMEE-YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           VT+N +   + + G     E+    +M H  +KPN  T  ++V+ Y + G + +      
Sbjct: 496 VTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFY 555

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           +++   V  +   FN +I  +    D++ +GE+   M+E    PD +TF+T++ A++++G
Sbjct: 556 RMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVG 615

Query: 326 MTEAAQNLENKMI 338
             +  + +   M+
Sbjct: 616 DMKRCEEIYRDML 628



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 102/214 (47%), Gaps = 2/214 (0%)

Query: 122 SFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           SF  ++ SGG    D+ +   +++     G  ++    +N     G K  I T   L  +
Sbjct: 304 SFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSIITYTTLVTA 363

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             R   +  + S++  +QK    P  + +N +I    ++G++++  + F+KMK  G KP 
Sbjct: 364 LTRQKHFHSLLSLISKVQKNGLRPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPT 423

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF 299
           + T+ +L+  Y K G + +   +L  +   +++  +    N ++ A+     +E+   + 
Sbjct: 424 ASTFNTLIKGYGKIGKLEESSRLLEMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIV 483

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             M+     PD +TF T+ +AY+ +G T  A+++
Sbjct: 484 YKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDM 517


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 161/341 (47%), Gaps = 3/341 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +L K      A  LFE M     +P V  YT L+   G++G LDEA++  ++M+    
Sbjct: 268 MALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRR-EG 326

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEM 119
           C+PD    + +I    K  R D   K+  EM  L    S VTYNTII    ++K +  E+
Sbjct: 327 CRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEI 386

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            S F  M +  G  P  FT + +I  +  +   EK      E +  G          L  
Sbjct: 387 SSWFERM-KGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLID 445

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           + G+A  YD    +   +++     +   Y ++I+  GKAG ++   + F +M   G  P
Sbjct: 446 ALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTP 505

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N   Y +L+S  ++AG++ +  + +R++++   I D   +N I++A  + G  ++   + 
Sbjct: 506 NVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGML 565

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             MK+    PD +++ T++ A +  GM E A  L  +M A+
Sbjct: 566 CNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAI 606



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 152/343 (44%), Gaps = 16/343 (4%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLG  K   +A  +F  + +   +P+   Y +++      G  ++     N+M +   C 
Sbjct: 164 MLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCF 223

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DGYGKAKK 115
           PD  TYS LI +  K  R D    +L EM   G++ +A  Y  ++       + +G    
Sbjct: 224 PDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGL 283

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           FEEM   +        C PD+FT   +I   G +G +++   +++E    G + D   +N
Sbjct: 284 FEEMRHQY--------CRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMN 335

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKH 234
            +    G+AG  D    + + M+     P+VVTYN +I+  F     + ++  +F++MK 
Sbjct: 336 NMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKG 395

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+ P+  TY  L+  + K     K   +L +++          +  +I A G+A   + 
Sbjct: 396 SGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 455

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             ELF  +KE         +A MI+     G  + A +L ++M
Sbjct: 456 ANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEM 498



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 134/287 (46%), Gaps = 5/287 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVSDCK 62
           LGK  + + A  LFE M +    PSV  Y  ++ A  +S   + E  S    MK  S   
Sbjct: 341 LGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKG-SGIS 399

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++     
Sbjct: 400 PSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANEL 459

Query: 123 FSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F  + E+ G     ++ +  MI   G +G ++     ++E N +G   ++   N L    
Sbjct: 460 FQELKENCGSSSARVYAV--MIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGL 517

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            RAGM D+  + M  MQ     P + +YNI++    K G  ++       MK   +KP++
Sbjct: 518 ARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDA 577

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           ++Y +++ A S AG+  +   +++++       D   ++ I+ A G+
Sbjct: 578 VSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIGK 624



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI-ECSAVTYNTIIDGYGKAKKFEEMESS 122
           D  TY  LI+      ++  + K++ EM    +   + +  + II   G AK   +  + 
Sbjct: 118 DTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAI 177

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSY 181
           F   +++  C P     NSMI    + G  EK+ + YNE +  G    D  T + L  ++
Sbjct: 178 FYQ-IKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAF 236

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G  D    +++ M+     PT   Y +++    K  ++      F++M+H+  +P+ 
Sbjct: 237 CKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDV 296

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY  L+    KAG + +  +   ++       DT   N +I+  G+AG ++   +LF  
Sbjct: 297 FTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEE 356

Query: 302 MKERHCVPDNITFATMIQA 320
           M+   C+P  +T+ T+I+A
Sbjct: 357 METLRCIPSVVTYNTIIKA 375


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 138/267 (51%), Gaps = 2/267 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+ KQ    + L + M+ DG +P+V  Y  L+ +YG++  L++A    N M+  + C+
Sbjct: 347 ILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQK-AGCE 405

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI    K    +   ++   M   G+     TY+ +I+  GKA      +  
Sbjct: 406 PDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKL 465

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M+E G C P++ T N MI+    + N +   K Y +    G + D  T +I+ +  G
Sbjct: 466 FCEMIEQG-CVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLG 524

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            +G  D+  ++   M+++ + P    Y ++++ +GKAG++EK  E+++ M H G+ PN  
Sbjct: 525 HSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVP 584

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVEN 269
           T  SL+SA+ +   +    ++L+ + N
Sbjct: 585 TCNSLLSAFLRVNRLPDAYNLLQSMLN 611



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 140/289 (48%), Gaps = 1/289 (0%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           +K +   K D YTY+ ++    +  +F  I K+L +M   G + + VTYN +I  YG+A 
Sbjct: 328 LKQLPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRAN 387

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
              +    F+ M +  GC PD  T  ++I  +  +G +    + Y      G+  D  T 
Sbjct: 388 YLNDAVEVFNQM-QKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTY 446

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           +++    G+AG       +   M ++   P +VTYNI+I    KA + +   + ++ M++
Sbjct: 447 SVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQN 506

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G +P+ +TY  ++     +G + + ++I  +++  + + D P +  ++  +G+AG+VEK
Sbjct: 507 AGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEK 566

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
             E +  M      P+  T  +++ A+  +     A NL   M+ +  N
Sbjct: 567 AWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLGLN 615



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 133/282 (47%), Gaps = 8/282 (2%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD-CKPDVYTYSILIKSCTKFHR 80
           G K     YT +V   G++    + F  IN +  + V D C+P V TY+ LI S  + + 
Sbjct: 333 GFKHDGYTYTTMVGILGRA----KQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANY 388

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            +   ++  +M   G E   VTY T+ID + KA  F          +++ G  PD FT +
Sbjct: 389 LNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAG-FLNFAMEMYQRMQAAGLSPDTFTYS 447

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            MI+  G +G++   +K + E    G   ++ T NI+     +A  Y     +   MQ  
Sbjct: 448 VMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNA 507

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
            F P  VTY+IV+E  G +G++++ E  F +MK +   P+   Y  LV  + KAG + K 
Sbjct: 508 GFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKA 567

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
               + + ++ +  + P  N ++SA+ +   +     L  +M
Sbjct: 568 WEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSM 609



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 8/206 (3%)

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           CH D +  N ++    +         W  +  L G K D  T   +    GRA  +  + 
Sbjct: 301 CHMDAYQANQVLKQLQDHTVALGFFHWLKQ--LPGFKHDGYTYTTMVGILGRAKQFVAIN 358

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++D M +    PTVVTYN +I ++G+A ++    E F +M+  G +P+ +TYC+L+  +
Sbjct: 359 KLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIH 418

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           +KAG +     + ++++ + +  DT  ++ +I+  G+AG +    +LF  M E+ CVP+ 
Sbjct: 419 AKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNL 478

Query: 312 ITFATMIQAYNALGMTEAAQNLENKM 337
           +T+  MI       +   A+N +N +
Sbjct: 479 VTYNIMI------ALQAKARNYQNAL 498



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 146/323 (45%), Gaps = 13/323 (4%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP--DVYTYSILIKSCTKF----HRF 81
           S+   ++L S    S   D+  +    +K+  + +P  D    +++ +S  +F    H  
Sbjct: 217 SIAADSSLDSHSLPSDAFDKRRTIPQRLKAQPNRRPSRDTKMPAVVARSARQFVSTGHVV 276

Query: 82  DLIEKILAEMSY-LGIECSAVTYNTIIDGYGKAKKFEEMESS------FSAMVESGGCHP 134
           + + +IL ++ +    E + V  N  +D Y   +  ++++        F  + +  G   
Sbjct: 277 ENVSQILRQLRWGPSAEEALVNLNCHMDAYQANQVLKQLQDHTVALGFFHWLKQLPGFKH 336

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D +T  +M+   G +     + K  ++    G +  + T N L  SYGRA   +    V 
Sbjct: 337 DGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVF 396

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + MQK    P  VTY  +I+   KAG +    E +++M+  G+ P++ TY  +++   KA
Sbjct: 397 NQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCLGKA 456

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G +   D +  ++     + +   +N +I+   +A + +   +L+  M+     PD +T+
Sbjct: 457 GHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTY 516

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
           + +++     G  + A+ + ++M
Sbjct: 517 SIVMEVLGHSGYLDEAEAIFSEM 539



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 128/298 (42%), Gaps = 4/298 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +++ M + GL P    Y+ +++  G++G L  A     +M     C P++ TY+I+I   
Sbjct: 430 MYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIE-QGCVPNLVTYNIMIALQ 488

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K   +    K+  +M   G E   VTY+ +++  G +   +E E+ FS M       PD
Sbjct: 489 AKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWV-PD 547

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
                 ++  +G +GN+EK  +WY      G+  ++ T N L  ++ R        +++ 
Sbjct: 548 EPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQ 607

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA- 254
            M      P++ TY +++    +A     M  Y + M   G  P  +   SL SA     
Sbjct: 608 SMLNLGLNPSLQTYTLLLSCCTEARSPYDMGCYCELMSVTG-HPAHMFLSSLPSAGPDGQ 666

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
            +   V   L  + + D        + ++    ++G  E+ G ++    +R+  PD +
Sbjct: 667 NVRHHVSKFLDMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEIAAQRNVYPDAV 724



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 43/180 (23%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +  K +  + A  L+  M + G +P    Y+ ++   G SG LDEA +  ++MK   +
Sbjct: 485 IALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKR-KN 543

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD   Y +L                                   +D +GKA   E+  
Sbjct: 544 WVPDEPVYGLL-----------------------------------VDLWGKAGNVEKAW 568

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNIL 177
             + AM+ +G C P++ T NS++SA+     + ++   YN    M   G+   +QT  +L
Sbjct: 569 EWYQAMLHAGLC-PNVPTCNSLLSAF---LRVNRLPDAYNLLQSMLNLGLNPSLQTYTLL 624


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 174/369 (47%), Gaps = 37/369 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + K+  +A L FE M   GLKP  +  +AL+  + + G +DE    I D+        
Sbjct: 219 LCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLR-IKDVMVSCGIPI 277

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY------GKAKKF- 116
           ++ TY++LI    KF + +   +IL  M  LG + ++ T+  +I+GY      G+A +  
Sbjct: 278 NLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELL 337

Query: 117 EEMES--------SFSAMVESGGCH--------------------PDIFTLNSMISAYGN 148
           +EME         S+ AM+ +G CH                    P++   +++I  Y +
Sbjct: 338 DEMEKRNLVPSAVSYGAMI-NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYAS 396

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G IE+  +  +  +  GV  DI   N +     +AG  ++  + +  +Q R   P  VT
Sbjct: 397 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 456

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           +   I  + K G + +  +YF +M   G+ PN+  Y  L++ + KAG +M+  SI R + 
Sbjct: 457 FGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLH 516

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              V+ D    +  I    + G V++  ++F  +KE+  VPD  T++++I  +   G  E
Sbjct: 517 ALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVE 576

Query: 329 AAQNLENKM 337
            A  L ++M
Sbjct: 577 KAFELHDEM 585



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 36/370 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L  CK    A+ L E M   GLKP+V VY+ L+  Y   G ++EA   ++ M S S   P
Sbjct: 359 LCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM-SCSGVAP 417

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D++ Y+ +I   +K  + +     L E+   G++  AVT+   I GY K  K  E    F
Sbjct: 418 DIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYF 477

Query: 124 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
             M++ G                                  G  PD+ T ++ I     +
Sbjct: 478 DEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKN 537

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G +++  K ++E    G+  D+ T + L   + + G  +K   + D M  +   P +  Y
Sbjct: 538 GRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIY 597

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N +++   K+G I++  + F  M  +G++P+S+TY +++  Y K+  + +  S+  ++ +
Sbjct: 598 NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS 657

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
             V   +  +N ++    + GD+EK   LF  M ++      ++F T+I  Y      + 
Sbjct: 658 KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQE 716

Query: 330 AQNLENKMIA 339
           A  L  +MIA
Sbjct: 717 ASQLFQEMIA 726



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 161/330 (48%), Gaps = 7/330 (2%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+  F+ ML  GL P+  +YT L++ + ++G L EA S    + ++    PDV T S  
Sbjct: 472 EAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALG-VLPDVQTCSAF 530

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-- 129
           I    K  R     K+ +E+   G+     TY+++I G+ K     E+E +F    E   
Sbjct: 531 IHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG---EVEKAFELHDEMCL 587

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G  P+IF  N+++     SG+I++  K ++     G++ D  T + +   Y ++    +
Sbjct: 588 KGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE 647

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             S+   M  +   P    YN ++    K G +EK    F++M  +G    ++++ +L+ 
Sbjct: 648 AFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLID 706

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            Y K+  I +   + +++    ++ D   +  +I  + +AG +E+   LF  M+ER+ + 
Sbjct: 707 GYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIV 766

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIA 339
           D +T+ +++  YN LG +     L  KM+A
Sbjct: 767 DTVTYTSLMYGYNKLGQSSEVFALFEKMVA 796



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 144/319 (45%), Gaps = 19/319 (5%)

Query: 31  VYTALVSAYGQSGLLDEA----FSTIND--MKSVSDCK-----------PDVYTYSILIK 73
           V+  L+ +Y + G+LDEA    F   ND  + S+  C            P+ YTY+I+  
Sbjct: 158 VFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITA 217

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
              +  R +  +    EM   G++      + +IDG+ +    +E+      MV S G  
Sbjct: 218 GLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMV-SCGIP 276

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
            ++ T N +I      G +EK  +       +G K + +T  +L + Y R     +   +
Sbjct: 277 INLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALEL 336

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           +D M+KR   P+ V+Y  +I        +    +  +KM   G+KPN + Y +L+  Y+ 
Sbjct: 337 LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYAS 396

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
            G I +   +L  +  S V  D   +N IIS   +AG +E+     L ++ R   PD +T
Sbjct: 397 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVT 456

Query: 314 FATMIQAYNALG-MTEAAQ 331
           F   I  Y+  G MTEAA+
Sbjct: 457 FGAFILGYSKTGKMTEAAK 475



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 152/311 (48%), Gaps = 5/311 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  + + G+ P V   +A +    ++G + EA    +++K      PDV+TYS L
Sbjct: 507 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE-KGLVPDVFTYSSL 565

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K    +   ++  EM   GI  +   YN ++DG  K+   +     F  M E G 
Sbjct: 566 ISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKG- 624

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK-M 190
             PD  T ++MI  Y  S N+ +    ++E    GV+      N L     + G  +K M
Sbjct: 625 LEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAM 684

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
               + +QK F   T +++N +I+ + K+  I++  + F++M  + + P+ +TY +++  
Sbjct: 685 NLFREMLQKGF--ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDW 742

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + KAG + + + + ++++  ++I+DT  +  ++  Y + G   ++  LF  M  +   PD
Sbjct: 743 HCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPD 802

Query: 311 NITFATMIQAY 321
            +T+  +I A+
Sbjct: 803 EVTYGLVIYAH 813



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 156/360 (43%), Gaps = 39/360 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F  +   GL P V  Y++L+S + + G +++AF  ++D   +    P+++ Y+ 
Sbjct: 541 QEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFE-LHDEMCLKGIAPNIFIYNA 599

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K        K+   M   G+E  +VTY+T+IDGY K++   E  S F  M  S 
Sbjct: 600 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM-PSK 658

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P  F  N+++      G++EK    + E    G  A   + N L   Y ++    + 
Sbjct: 659 GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEA 717

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR--------------- 235
             +   M  +   P  VTY  VI+   KAG +E+    FK+M+ R               
Sbjct: 718 SQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYG 777

Query: 236 --------------------GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                               G+KP+ +TY  ++ A+ K   +++   +  +V    ++  
Sbjct: 778 YNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTK 837

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
               + +I+A  +  D+ +  +L   M E    P     +T++++++  G M EA +  E
Sbjct: 838 GTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFE 897



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 152/336 (45%), Gaps = 5/336 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    ++A  LF+ M   GL+P    Y+ ++  Y +S  + EAFS  ++M S    +
Sbjct: 603 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPS-KGVQ 661

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  + Y+ L+  C K    +    +  EM   G   + +++NT+IDGY K+ K +E    
Sbjct: 662 PHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQL 720

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M+ +    PD  T  ++I  +  +G +E+    + E     +  D  T   L   Y 
Sbjct: 721 FQEMI-AKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYN 779

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   ++ ++ + M  +   P  VTY +VI    K  ++ +  +   ++  +GM     
Sbjct: 780 KLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT 839

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            +  L++A  K   + +   +L ++    +       + ++ ++ +AG +++   +F  +
Sbjct: 840 IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGV 899

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           K    VPD  T   ++        +E A+NL  +++
Sbjct: 900 KSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 935


>gi|410110145|gb|AFV61152.1| pentatricopeptide repeat-containing protein 123, partial [Nashia
           inaguensis]
          Length = 433

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 154/345 (44%), Gaps = 39/345 (11%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---------------------- 57
           M    L P    Y+ L++ +G+ GL D A S +  M+                       
Sbjct: 3   MRQRALSPDRYTYSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKLCD 62

Query: 58  ------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
                        S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T
Sbjct: 63  YSKAISIFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 122

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           ++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     M
Sbjct: 123 LLTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G++  + + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK 
Sbjct: 182 GIEPSVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 241

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
               ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I A
Sbjct: 242 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 301

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           Y +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 YERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 342



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 152/337 (45%), Gaps = 10/337 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S  ++M+ +  C 
Sbjct: 91  VFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIK-CL 149

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE S V+YNT++  YG A+ F E    
Sbjct: 150 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPSVVSYNTLLRVYGDAELFGEAIHL 209

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +      ++ T NSM+  YG +   EK      E    G++ +  T + +   +G
Sbjct: 210 FRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWG 268

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + G  D  R+ M F + R     +  + +  +I  + +AG +     + K++ H   +P+
Sbjct: 269 KVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA----HAKRLLHELKRPD 322

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +I   + +   + AG I +   + RQ  ++  + D   F  +I    +      + E+F 
Sbjct: 323 NIPRDTAIHILAGAGRIEEATYVFRQAIDAGXVKDITVFERMIHLLSKYKKYSNVVEVFD 382

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +     PD+   A ++ AY  L   + A ++  +M
Sbjct: 383 KXRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 419



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 156/369 (42%), Gaps = 75/369 (20%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 69  IFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 127

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P 
Sbjct: 128 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPS 186

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 187 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 243

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++ AY 
Sbjct: 244 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 303

Query: 253 K-------------------------------AGLIMKVDSILRQVENSDVILDTPFFN- 280
           +                               AG I +   + RQ  ++  + D   F  
Sbjct: 304 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGXVKDITVFER 363

Query: 281 ----------------------------------CIISAYGQAGDVEKMGELFLTMKERH 306
                                              +++AYG+  + +K  ++++ M+E  
Sbjct: 364 MIHLLSKYKKYSNVVEVFDKXRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVG 423

Query: 307 CV-PDNITF 314
           CV  D + F
Sbjct: 424 CVFSDEVHF 432



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 125/317 (39%), Gaps = 69/317 (21%)

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM----------------------- 126
           EM    +     TY+T+I  +GK   F+   S    M                       
Sbjct: 2   EMRQRALSPDRYTYSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKLC 61

Query: 127 -----------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA------ 169
                      ++  G  PD+   N+MI+ +G +    +     +E    GV        
Sbjct: 62  DYSKAISIFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYS 121

Query: 170 -----------------------------DIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
                                        D+ T NI+   YG+ GM  +   +   M+K 
Sbjct: 122 TLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P+VV+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K 
Sbjct: 182 GIEPSVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 241

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI A
Sbjct: 242 NNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 301

Query: 321 YNALGMTEAAQNLENKM 337
           Y   G+   A+ L +++
Sbjct: 302 YERAGLVAHAKRLLHEL 318



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 83/174 (47%)

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           +E     +  D  T + L   +G+ G++D   S +  M++      ++ Y+ +IE   K 
Sbjct: 1   DEMRQRALSPDRYTYSTLITHFGKEGLFDAAXSWLQKMEQDQVPGDLILYSNLIELSXKL 60

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
               K    F ++K  G  P+ + Y ++++ + KA L  +  S++ +++ + V+ +T  +
Sbjct: 61  CDYSKAISIFSRLKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSY 120

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           + +++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 STLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 174


>gi|255661202|gb|ACU25770.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 426

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 154/342 (45%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEE--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   GI    V YN++I+ +GKAK F E  +  S M  +G            
Sbjct: 62  RAISIFSRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M+ RG++PN+ITY +++S + K G + +   + +++  S + +D   +  +I AY +
Sbjct: 242 IQEMQDRGIEPNAITYSTIISIWGKVGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLQELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/336 (19%), Positives = 129/336 (38%), Gaps = 74/336 (22%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P    Y  L++ Y ++    EA S  ++M+ +  C 
Sbjct: 88  VFGKAKLFREARALVSEMRTAGVMPDTVSYCTLLTMYVENQKFLEALSLFSEMREIQ-CS 146

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 147 FDLTTCNIMIDVYGQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 206

Query: 123 FSAM----------------------------------VESGGCHPDIFTLNSMISAYGN 148
           F  M                                  ++  G  P+  T +++IS +G 
Sbjct: 207 FRLMQRKNIEQNVVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYSTIISIWGK 266

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G +++    + +    G++ D      +  +Y RAG+    + ++  +++    P  + 
Sbjct: 267 VGKLDRAAMLFQKLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRLLQELKR----PDNIP 322

Query: 209 YNIVIETFGKAGHIEK-----------------------------------MEEYFKKMK 233
            +  I     AG IE+                                   + E F KM+
Sbjct: 323 RDTAIHILAGAGRIEEATWVFRQAVEAGEVKDITVFERMINLFSKHKKYPNVVEVFDKMR 382

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
             G  P+S     +++AY K     K +S+  ++++
Sbjct: 383 GLGYFPHSNVIALVLNAYGKLHEFDKANSVYMEMQD 418



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 106/262 (40%), Gaps = 31/262 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 160 GQLGMAKEADKLFWSMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 218

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ ++    K    +    ++ EM   GIE +A+TY+TII  +GK  K       F+
Sbjct: 219 VVTYNSMMVIYGKTLEHEKANNLIQEMQDRGIEPNAITYSTIISIWGKVGKLDRAAMLFQ 278

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++  S        +  M+   E  G              PD    ++ I     +G IE+
Sbjct: 279 KLRCSGIEIDQVLYQTMIVAYERAGLVAHAKRLLQELKRPDNIPRDTAIHILAGAGRIEE 338

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +   + +   Y  +  V D M+   +FP      +V+ 
Sbjct: 339 ATWVFRQAVEAGEVKDITVFERMINLFSKHKKYPNVVEVFDKMRGLGYFPHSNVIALVLN 398

Query: 215 TFGKAGHIEKMEEYFKKMKHRG 236
            +GK    +K    + +M+  G
Sbjct: 399 AYGKLHEFDKANSVYMEMQDEG 420



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KMEE                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G+ P+ + Y S+++ + KA L  +  +++ ++  + V+ DT  +  +
Sbjct: 61  SRAISIFSRLKRSGIAPDLVAYNSMINVFGKAKLFREARALVSEMRTAGVMPDTVSYCTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   LF  M+E  C  D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENQKFLEALSLFSEMREIQCSFDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 164/334 (49%), Gaps = 2/334 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K  + A  LF+ M + G++P+V  Y++L+S     G   +A   ++DM       P
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 119

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV+T+S LI +  K  +    EK+  EM    I+ S VTY+++I+G+    + +E +  F
Sbjct: 120 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 179

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV S  C PD+ T N++I  +     +E+  + + E +  G+  +  T NIL +   +
Sbjct: 180 EFMV-SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 238

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  D  + +   M      P ++TYN +++   K G +EK    F+ ++   M+P   T
Sbjct: 239 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 298

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  ++    KAG +     +   +    V  D   +N +IS + + G  E+   LF  MK
Sbjct: 299 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 358

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           E   +P++  + T+I+A    G  EA+  L  +M
Sbjct: 359 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 392



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 150/318 (47%), Gaps = 2/318 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M++ G +P +  Y  +V+   + G  D AF+ +N M+     +P V  Y+ +I   
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ-GKLEPGVLIYNTIIDGL 61

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K+   D    +  EM   GI  + VTY+++I       ++ +     S M+E    +PD
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK-INPD 120

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +FT +++I A+   G + + EK Y+E     +   I T + L   +      D+ + + +
Sbjct: 121 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 180

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
           FM  +  FP VVTYN +I+ F K   +E+  E F++M  RG+  N++TY  L+    +AG
Sbjct: 181 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 240

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
                  I +++ +  V  +   +N ++    + G +EK   +F  ++     P   T+ 
Sbjct: 241 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 300

Query: 316 TMIQAYNALGMTEAAQNL 333
            MI+     G  E   +L
Sbjct: 301 IMIEGMCKAGKVEDGWDL 318



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 126/279 (45%), Gaps = 36/279 (12%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PD+ TY +++    K    DL   +L +M    +E   + YNTIIDG  K K  ++  
Sbjct: 12  CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 71

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           + F  M E+ G  P++ T +S+IS   N G      +W                      
Sbjct: 72  NLFKEM-ETKGIRPNVVTYSSLISCLCNYG------RWS--------------------- 103

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                  D  R + D ++++   P V T++ +I+ F K G + + E+ + +M  R + P+
Sbjct: 104 -------DASRLLSDMIERKIN-PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 155

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY SL++ +     + +   +   + +     D   +N +I  + +   VE+  E+F 
Sbjct: 156 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 215

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            M +R  V + +T+  +IQ     G  + AQ +  +M++
Sbjct: 216 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 254



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 111/267 (41%), Gaps = 37/267 (13%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ M+   + PS+  Y++L++ +     LDEA      M S   C PDV TY+ L
Sbjct: 139 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS-KHCFPDVVTYNTL 197

Query: 72  IKSCTKFHRF-----------------------------------DLIEKILAEMSYLGI 96
           IK   K+ R                                    D+ ++I  EM   G+
Sbjct: 198 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 257

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
             + +TYNT++DG  K  K E+    F  +  S    P I+T N MI     +G +E   
Sbjct: 258 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK-MEPTIYTYNIMIEGMCKAGKVEDGW 316

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
             +   +L GVK D+   N +   + R G  ++  ++   M++    P    YN +I   
Sbjct: 317 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 376

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            + G  E   E  K+M+  G   ++ T
Sbjct: 377 LRDGDREASAELIKEMRSCGFAGDAST 403



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 65/147 (44%)

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           +++D M  +   P +VTY +V+    K G  +       KM+   ++P  + Y +++   
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K   +    ++ +++E   +  +   ++ +IS     G       L   M ER   PD 
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
            TF+ +I A+   G    A+ L ++M+
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMV 148


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 148/308 (48%), Gaps = 2/308 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E  + +++ M+++G  P V  ++ LV+   + GL   A   +NDM +   CKP++ TY+I
Sbjct: 364 EATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDA-KGCKPNLNTYTI 422

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  + +    IL EM   G   + V YN +I    K  K  E    F  M  S 
Sbjct: 423 LIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEM-SSK 481

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PDIFT NS+I        +E     Y +  L GV A+  T N L  ++ R G   + 
Sbjct: 482 GCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEA 541

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M  R      +TYN +I+   K G +EK    F++M  +G+ P+ IT   L++ 
Sbjct: 542 LKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILING 601

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           +  AG +      +R + +     D   +N +I+   + G +++   LF  ++     PD
Sbjct: 602 FCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPD 661

Query: 311 NITFATMI 318
           +IT+ T+I
Sbjct: 662 SITYNTLI 669



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 164/371 (44%), Gaps = 34/371 (9%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +VM   C   + + A LL   M   G  P+  +Y  L+ A  +   +DEA   + +M  +
Sbjct: 215 LVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEM-FL 273

Query: 59  SDCKPDVYTYSILIKSCTKFHRF----DLIEKILA------EMSY------LGIEC---- 98
             C PDV T++ +I    + +R      L+++++       +M+Y      L   C    
Sbjct: 274 MGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDE 333

Query: 99  -----------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
                      + V +NT+++G+ +  +  E  +     + + G  PD+FT +++++   
Sbjct: 334 AQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLC 393

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G      +  N+ +  G K ++ T  IL   + + G  ++   ++  M  + F    V
Sbjct: 394 KKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTV 453

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            YN +I    K G I +  + F +M  +G KP+  T+ SL+    +   +    ++ R +
Sbjct: 454 GYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDM 513

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
               VI ++  FN +I A+ + G++++  +L   M  R C  D IT+  +I+A    G  
Sbjct: 514 VLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAV 573

Query: 328 EAAQNLENKMI 338
           E    L  +MI
Sbjct: 574 EKGLGLFEEMI 584



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 146/340 (42%), Gaps = 11/340 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++++G C  P  AS +F  MLS G+ P+   +  ++ A      +D A   + DM     
Sbjct: 184 VLVVGNC--PSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTK-HG 240

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P+   Y  LI + +K  R D   K+L EM  +G      T+NT+I G+ +  +  E  
Sbjct: 241 CVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGA 300

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA-DIQTLNILTK 179
                M+  G      FT N M   Y   G  +       +  L  V   ++   N L  
Sbjct: 301 KLVDRMILKG------FTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVN 354

Query: 180 SYGRAGMYDKMRS-VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            + R G  ++  + V D M    + P V T++ ++    K G      E    M  +G K
Sbjct: 355 GFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCK 414

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN  TY  L+  + K G + +   ILR++      L+T  +N +ISA  + G + +  ++
Sbjct: 415 PNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDM 474

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  M  + C PD  TF ++I     +   E A  L   M+
Sbjct: 475 FGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMV 514



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/321 (19%), Positives = 136/321 (42%), Gaps = 6/321 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+     ++  ++  YG++GL  +A   + DMK V  C+P   +Y++++      +
Sbjct: 130 MKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGN 189

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
              +   +  +M   G+  +  T+  ++       + +        M + G C P+    
Sbjct: 190 CPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHG-CVPNSMIY 248

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            ++I A      +++  K   E  LMG   D+ T N +   + R     +   ++D M  
Sbjct: 249 QTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMIL 308

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           + F P  +TY  ++    K   I++ +    K+      PN + + +LV+ + + G + +
Sbjct: 309 KGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVP----GPNVVHFNTLVNGFVRNGRLNE 364

Query: 260 VDS-ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             + +  ++ N+  + D   F+ +++   + G      EL   M  + C P+  T+  +I
Sbjct: 365 ATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILI 424

Query: 319 QAYNALGMTEAAQNLENKMIA 339
             +   G  E A  +  +M+ 
Sbjct: 425 DGFCKKGQLEEAGLILREMLT 445



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 24/232 (10%)

Query: 119 MESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           ME    A  + G CH   ++ L  +I   G +   + +++   +    G+        ++
Sbjct: 88  MEIFKWAGAQKGYCHSFSVYYL--LIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILI 145

Query: 178 TKSYGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
            K YGRAG+  +  R ++D        P+  +YN+V++              F  M  +G
Sbjct: 146 MKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKG 205

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL----------DTPFFNCIISAY 286
           + PN  T+          GL+MK   ++ +V+N+ ++L          ++  +  +I A 
Sbjct: 206 VSPNDYTF----------GLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDAL 255

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +   V++  +L   M    C PD  TF T+I  +  L        L ++MI
Sbjct: 256 SKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMI 307


>gi|410110067|gb|AFV61113.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           herrerae]
          Length = 433

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 156/345 (45%), Gaps = 39/345 (11%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---------------------- 57
           M    L P    Y+ L++ +G+ GL D A S +  M+                       
Sbjct: 3   MRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD 62

Query: 58  ------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
                        S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T
Sbjct: 63  YSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYST 122

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           ++  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     M
Sbjct: 123 LLTMYVENKKFIEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK 
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 241

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
               ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I A
Sbjct: 242 NNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVA 301

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           Y +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 YERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 342



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 167/357 (46%), Gaps = 41/357 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA + I++MK+ +   P+  +YS L+   
Sbjct: 69  IFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKT-AGVMPNTASYSTLLTMY 127

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 128 VENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 186

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 187 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 243

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + + Y +++ AY 
Sbjct: 244 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 303

Query: 253 KAGLIMKVDSILRQVENSDVI-LDTPF---------------FNCIISAYGQAGDV---E 293
           +AGL+     +L ++++ D I  DT                 F   I A G+  D+   E
Sbjct: 304 RAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRQAIDA-GEVKDITVFE 362

Query: 294 KMGELFLTMKERHCV-------------PDNITFATMIQAYNALGMTEAAQNLENKM 337
           +M  LF   K+   V             PD+   A ++ AY  L   + A ++  +M
Sbjct: 363 RMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHELDKANDVYMEM 419



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 10  PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 69

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 70  FSRLKRSG-FMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASYSTLLTMYV 128

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 129 ENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 188

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 189 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 248

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 249 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 283



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 83/174 (47%)

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           +E     +  D  T + L   +G+ G++D   S +  M++      +V Y+ +IE   K 
Sbjct: 1   DEMRERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
               K    F ++K  G  P+ + Y ++++ + KA L  +  +++ +++ + V+ +T  +
Sbjct: 61  CDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARALISEMKTAGVMPNTASY 120

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           + +++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 STLLTMYVENKKFIEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 174


>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
 gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
          Length = 561

 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 143/293 (48%), Gaps = 9/293 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G +P   VY AL++A+     ++  L++     + MK +
Sbjct: 142 VMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYFDKMKGM 201

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P+V TY+IL+++  +  + D +  +  ++    +     T+N ++D YGK    +E
Sbjct: 202 ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKE 261

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           ME+  + M  S  C PDI T N +I +YG     EKME+ +        K  + T N + 
Sbjct: 262 MEAVLTRM-RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMI 320

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM--KHRG 236
            +YG+A M DK   V   M    + P+ +TY  +I  +G  G + +  E F+++    R 
Sbjct: 321 INYGKARMIDKAEWVFKKMNDMNYMPSFITYECMIMMYGYCGSVSRAREIFEEVVDSERV 380

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           +K +++   +++  Y + GL M+ D +        V  D   +  +  AY +A
Sbjct: 381 LKASTLN--AMLEVYCRNGLYMEADKLFHNASAFRVHPDASTYKFLYKAYTKA 431



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 153/318 (48%), Gaps = 11/318 (3%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD---L 83
           P   VY+ L+S  G+ G    A    ++MK+ S C+PD   Y+ LI +    H  D    
Sbjct: 131 PDNGVYSKLISVMGKKGQTRMAMWLFSEMKN-SGCRPDASVYNALITA--HLHTRDKAKA 187

Query: 84  IEKILAEMSYL-GIE-C--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +EK+      + G+E C  + VTYN ++  + ++ K +++ + F  + +     PD++T 
Sbjct: 188 LEKVRGYFDKMKGMERCQPNVVTYNILLRAFAQSGKVDQVNALFKDL-DMSPVSPDVYTF 246

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N ++ AYG +G I++ME           K DI T N+L  SYG+   ++KM      + +
Sbjct: 247 NGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMR 306

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               PT+ T+N +I  +GKA  I+K E  FKKM      P+ ITY  ++  Y   G + +
Sbjct: 307 SKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYMPSFITYECMIMMYGYCGSVSR 366

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              I  +V +S+ +L     N ++  Y + G   +  +LF         PD  T+  + +
Sbjct: 367 AREIFEEVVDSERVLKASTLNAMLEVYCRNGLYMEADKLFHNASAFRVHPDASTYKFLYK 426

Query: 320 AYNALGMTEAAQNLENKM 337
           AY    M E  Q L  KM
Sbjct: 427 AYTKADMKEHVQILMKKM 444



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 109/227 (48%), Gaps = 2/227 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +Q + LF+ +    + P V  +  ++ AYG++G++ E  + +  M+S ++CKPD+ T+++
Sbjct: 225 DQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRS-NECKPDIITFNV 283

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S  K   F+ +E+    +     + +  T+N++I  YGKA+  ++ E  F  M +  
Sbjct: 284 LIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMN 343

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P   T   MI  YG  G++ +  + + E           TLN + + Y R G+Y + 
Sbjct: 344 YM-PSFITYECMIMMYGYCGSVSRAREIFEEVVDSERVLKASTLNAMLEVYCRNGLYMEA 402

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             +          P   TY  + + + KA   E ++   KKM+  G+
Sbjct: 403 DKLFHNASAFRVHPDASTYKFLYKAYTKADMKEHVQILMKKMEKDGI 449



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 113/271 (41%), Gaps = 61/271 (22%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           M  +SD +P V T    +K     H F L E++                       GK+ 
Sbjct: 75  MSRISDKEPLVKTLDKYVKVVRCDHCFLLFEEL-----------------------GKSD 111

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW-YNEFNLMGVKADIQT 173
           K+ +    F  M +     PD    + +IS  G  G   +M  W ++E    G + D   
Sbjct: 112 KWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQT-RMAMWLFSEMKNSGCRPDASV 170

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L  ++                               + T  KA  +EK+  YF KMK
Sbjct: 171 YNALITAH-------------------------------LHTRDKAKALEKVRGYFDKMK 199

Query: 234 HRGM---KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
             GM   +PN +TY  L+ A++++G + +V+++ + ++ S V  D   FN ++ AYG+ G
Sbjct: 200 --GMERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNG 257

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +++M  +   M+   C PD ITF  +I +Y
Sbjct: 258 MIKEMEAVLTRMRSNECKPDIITFNVLIDSY 288


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 158/336 (47%), Gaps = 5/336 (1%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            LG+  +     LL E+    G  P V  Y+ +++ Y + G LD+ +  I  MK     KP
Sbjct: 682  LGRINEAHHLLLLMEL---KGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQ-KGLKP 737

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            + YTY  +I    +  +    E+  +EM   GI    + Y T++DG+ K          F
Sbjct: 738  NSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFF 797

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              M  S    PD+ T  ++IS +   G++ +  K ++E    G++ DI T   L   Y +
Sbjct: 798  YEM-HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCK 856

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            AG       V + M +    P VVTY  +I+   K G ++   E   +M   G++PN  T
Sbjct: 857  AGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFT 916

Query: 244  YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
            Y S+V+   K+G I +   ++ + E + +  DT  +  ++ AY ++G+++K  E+   M 
Sbjct: 917  YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEML 976

Query: 304  ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             +   P  +TF  ++  +   GM E  + L N M+A
Sbjct: 977  GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLA 1012



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 152/320 (47%), Gaps = 6/320 (1%)

Query: 5    GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            G CK+ +   AS  F  M S  + P V  YTA++S + Q G + EA    ++M      +
Sbjct: 783  GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM-LCRGLE 841

Query: 63   PDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PD+ T++ L+   C   H  D   ++   M   G   + VTY T+IDG  K    +    
Sbjct: 842  PDIITFTELMNGYCKAGHIKDAF-RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 900

Query: 122  SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
                M + G   P+IFT NS+++    SGNIE+  K   EF   G+ AD  T   L  +Y
Sbjct: 901  LLHEMWKIG-LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 959

Query: 182  GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
             ++G  DK + ++  M  +   PT+VT+N+++  F   G +E  E+    M  +G+ PN+
Sbjct: 960  CKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNA 1019

Query: 242  ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             T+  LV  Y     +    +I + + +  V  D   +  ++  +  A ++++   LF  
Sbjct: 1020 TTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQE 1079

Query: 302  MKERHCVPDNITFATMIQAY 321
            MK +       T++ +I+ +
Sbjct: 1080 MKGKGFSVSVSTYSVLIKGF 1099



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 146/303 (48%), Gaps = 2/303 (0%)

Query: 12   QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            +A  LF  ML  GL+P +  +T L++ Y ++G + +AF   N M   + C P+V TY+ L
Sbjct: 827  EAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQ-AGCSPNVVTYTTL 885

Query: 72   IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
            I    K    D   ++L EM  +G++ +  TYN+I++G  K+   EE         E+ G
Sbjct: 886  IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEE-AVKLVGEFEAAG 944

Query: 132  CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             + D  T  +++ AY  SG ++K ++   E    G++  I T N+L   +   GM +   
Sbjct: 945  LNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 1004

Query: 192  SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
             ++++M  +   P   T+N +++ +    +++     +K M  RG++P+  TY +LV  +
Sbjct: 1005 KLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGH 1064

Query: 252  SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              A  + +   + ++++     +    ++ +I  + +     +  E+F  M+      D 
Sbjct: 1065 CNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADK 1124

Query: 312  ITF 314
              F
Sbjct: 1125 EIF 1127



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 133/313 (42%), Gaps = 6/313 (1%)

Query: 31  VYTALVSAYGQSGLLD--EAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           V  +L+S++ +   L+  E+F    D+   +  D   D   + +  +   +F       K
Sbjct: 560 VAQSLISSFWERPKLNVTESFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVEFGMLPEARK 619

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           +  +M   G+  S  + N  +    K   K       F    E G C  ++ + N +I  
Sbjct: 620 VFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCW-NVASYNIVIHF 678

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
               G I +         L G   D+ + + +   Y R G  DK+  +++ M+++   P 
Sbjct: 679 VCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPN 738

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
             TY  +I    +   + + EE F +M  +G+ P++I Y +LV  + K G I        
Sbjct: 739 SYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFY 798

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++ + D+  D   +  IIS + Q GD+ + G+LF  M  R   PD ITF  ++  Y   G
Sbjct: 799 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAG 858

Query: 326 MTEAAQNLENKMI 338
             + A  + N MI
Sbjct: 859 HIKDAFRVHNHMI 871


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 162/340 (47%), Gaps = 5/340 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +LGK  Q   A  +F          +V VY A++  Y ++G   +    ++ M+S   
Sbjct: 227 LSVLGKANQEALAVEIF-ARAEAAXGNTVQVYNAMMGVYARTGRFTKVQELLDLMRS-RG 284

Query: 61  CKPDVYTYSILIKSCTKFHRF--DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           C+PD+ +++ LI +  K      +L  ++L E+   GI+   +TYNT+I    +    EE
Sbjct: 285 CEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEE 344

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               ++ MV +  C PD++T N+MIS YG  G   +  + + +    G   D  T N L 
Sbjct: 345 AVKVYNDMV-AHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLL 403

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            ++ R G  DK++ + + M K  F    +TYN +I  +GK G  +   + +  MK  G  
Sbjct: 404 YAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRS 463

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+++TY  L+ +  KA +I +   ++ ++ N+ V      F+ +I  Y +AG   +  E 
Sbjct: 464 PDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEET 523

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  M      PD++ ++ M+        +  A  L  +M+
Sbjct: 524 FDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMV 563



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 159/332 (47%), Gaps = 7/332 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLL--DEAFSTINDMKSVSDCKPDVYTYSILIK 73
           L ++M S G +P +  +  L++A  +SG +  + A   +N+++  S  +PD+ TY+ LI 
Sbjct: 276 LLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRR-SGIQPDIITYNTLIS 334

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
           +C++    +   K+  +M     +    TYN +I  YG+     E    F  + ES G  
Sbjct: 335 ACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDL-ESKGFL 393

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           PD  T NS++ A+   GN++K+++   +   MG   D  T N +   YG+ G +D    +
Sbjct: 394 PDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQL 453

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
              M+     P  VTY ++I++ GKA  I++  E   +M +  +KP   T+ +L+  Y+K
Sbjct: 454 YSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAK 513

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           AG  ++ +     +  S +  D   ++ ++    +  +  K  +L+  M      PD+  
Sbjct: 514 AGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHAL 573

Query: 314 FATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           +  M++    LG     +++   +  M+E  G
Sbjct: 574 YEVMLR---VLGKENREEDVHKVVKDMEELCG 602



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 134/303 (44%), Gaps = 2/303 (0%)

Query: 31   VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
            V+ AL+ AY  SG  + A +  N M       P V + + L+++     R D +  ++ E
Sbjct: 816  VWNALIHAYAASGCYERARAIFNTMMR-DGPSPTVDSVNGLMQALIVDGRLDELYVVIQE 874

Query: 91   MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
            +  +G + S  +   ++D +  A    E++  +  M ++ G  P +     MI       
Sbjct: 875  LQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGM-KAAGYFPTMHLYRIMIGLLAKGK 933

Query: 151  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
             +  +E   +E  +   K D+   N + K Y   G + K   V   +Q+    P   TYN
Sbjct: 934  RVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYN 993

Query: 211  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             +I  + +    E+      +M+  G++P   TY SL+SA+ K  ++ + + +   + + 
Sbjct: 994  TLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSK 1053

Query: 271  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +  LD  F++ ++  +  +G+  K  +L   MKE    P   T   ++ +Y+  G  E A
Sbjct: 1054 ECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEA 1113

Query: 331  QNL 333
            + +
Sbjct: 1114 EKV 1116



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 144/345 (41%), Gaps = 37/345 (10%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E+A  +F  M+ DG  P+VD    L+ A    G LDE +  I +++ +   K    + ++
Sbjct: 831  ERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMG-FKISKSSITL 889

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            ++ +         ++KI   M   G   +   Y  +I    K K+  ++E+  S M E  
Sbjct: 890  MLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEM-EVA 948

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
               PD+   NS++  Y   G+ +K  + Y      G+K D  T N L   Y R    ++ 
Sbjct: 949  XFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEG 1008

Query: 191  RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK------------------- 231
             S+M  M++    P + TY  +I  FGK   +E+ EE F+                    
Sbjct: 1009 LSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKM 1068

Query: 232  ----------------MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                            MK  G++P   T   L+ +YS +G   + + +L  ++   + L 
Sbjct: 1069 FRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLS 1128

Query: 276  TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            T  ++ +I AY + GD     +  + MK+    PD+  +   ++A
Sbjct: 1129 TLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRA 1173



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 4/251 (1%)

Query: 3    MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD-EAFSTINDMKSVSDC 61
            +L K K+      +   M     KP + ++ +++  Y  +G+ D +    +  +   +  
Sbjct: 928  LLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLY--TGIGDFKKTGQVYQLIQEAGL 985

Query: 62   KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            KPD  TY+ LI    +  R +    ++ EM  +G+E    TY ++I  +GK +  E+ E 
Sbjct: 986  KPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEE 1045

Query: 122  SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             F  ++ S  C  D    + M+  + NSGN  K EK        GV+  I T+++L  SY
Sbjct: 1046 LFEGLL-SKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSY 1104

Query: 182  GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
              +G  ++   V+D ++      + + Y+ VI+ + K G      +   +MK  G++P+ 
Sbjct: 1105 SGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDH 1164

Query: 242  ITYCSLVSAYS 252
              +   V A S
Sbjct: 1165 RIWTCFVRAAS 1175



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 153/373 (41%), Gaps = 45/373 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK    ++A+ +   ML+  +KP++  ++AL+  Y ++G   EA  T + M   S  KP
Sbjct: 476 LGKANMIKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLR-SGIKP 534

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   YS+++    +F+      K+  EM     +     Y  ++   GK  + E++    
Sbjct: 535 DHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVV 594

Query: 124 SAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             M E  G +  +  ++      + ++ N+ ++          G + D + L  +  SYG
Sbjct: 595 KDMEELCGMNSQVICSILVKGECFDHAANMLRLAI------SQGCELDRENLLSILGSYG 648

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI-EKMEEY------------- 228
            +G + + R ++DF+++       +    +I    KA  + + + EY             
Sbjct: 649 SSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARDFGLFCGSF 708

Query: 229 ----------------------FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
                                 F  M+  G++P+   Y S+V  Y K G       ++ Q
Sbjct: 709 TMYESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQ 768

Query: 267 VENSDVILD-TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            E   ++ D       +I AYG+    +K   L  +++++  + D   +  +I AY A G
Sbjct: 769 AEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASG 828

Query: 326 MTEAAQNLENKMI 338
             E A+ + N M+
Sbjct: 829 CYERARAIFNTMM 841



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 116/289 (40%), Gaps = 35/289 (12%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y  L+  C +   F    +I ++M + G+E S   Y +++  Y K    E          
Sbjct: 711 YESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAE 770

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E G    D+     +I AYG     +K E             D +  N L  +Y  +G Y
Sbjct: 771 EKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCY 830

Query: 188 DKMRSVMDFMQKRFFFPTVVTYN-----------------------------------IV 212
           ++ R++ + M +    PTV + N                                   ++
Sbjct: 831 ERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLM 890

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           ++ F  AG+I ++++ ++ MK  G  P    Y  ++   +K   +  V++++ ++E +  
Sbjct: 891 LDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXF 950

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             D   +N ++  Y   GD +K G+++  ++E    PD  T+ T+I  Y
Sbjct: 951 KPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMY 999



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 2/151 (1%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            ++M  + ++PE+   L   M   GL+P +D Y +L+SA+G+  ++++A      + S  +
Sbjct: 996  ILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLS-KE 1054

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            CK D   Y I++K           EK+L  M   G+E +  T + ++  Y  + + EE E
Sbjct: 1055 CKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAE 1114

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
                 + +  G        +S+I AY  +G+
Sbjct: 1115 KVLDNL-KVEGLPLSTLPYSSVIDAYLKNGD 1144


>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 683

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 151/301 (50%), Gaps = 4/301 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+ P +  +  ++SAY       +A S    MK  +  +PD  T++I+I   +K  
Sbjct: 107 MTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG-AKVRPDTTTFNIIIYCLSKLG 165

Query: 80  RFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           +      +   M     EC    VT+ +I+  Y    + E   + F AMV + G  P+I 
Sbjct: 166 QSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMV-AEGLKPNIV 224

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           + N+++ AY   G          +    G+  D+ +   L  SYGR+    K + V   M
Sbjct: 225 SYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMM 284

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +K    P VVTYN +I+ +G  G + +  E F++M+  G+KPN ++ C+L++A S++   
Sbjct: 285 RKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKK 344

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           + VD++L   ++  + L+T  +N  I +Y  A ++EK   L+ +M+++    D++TF  +
Sbjct: 345 VNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTIL 404

Query: 318 I 318
           I
Sbjct: 405 I 405



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 149/310 (48%), Gaps = 4/310 (1%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D+Y  ++  + +   +D+A     +M+  S CKPD  TY  LI +  +  ++     ++ 
Sbjct: 12  DIYNMMIRLHARHNWVDQARGLFFEMQKWS-CKPDAETYDALINAHGRAGQWRWAMNLMD 70

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M    I  S  TYN +I+  G +  + E       M ++G   PD+ T N ++SAY + 
Sbjct: 71  DMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNG-VGPDLVTHNIVLSAYKSG 129

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVV 207
               K   ++       V+ D  T NI+     + G   +   + + M+++     P VV
Sbjct: 130 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVV 189

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           T+  ++  +   G IE     F+ M   G+KPN ++Y +L+ AY+  G+     S+L  +
Sbjct: 190 TFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDI 249

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           + + +I D   + C++++YG++    K  E+FL M++    P+ +T+  +I AY + G  
Sbjct: 250 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFL 309

Query: 328 EAAQNLENKM 337
             A  +  +M
Sbjct: 310 AEAVEIFRQM 319



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 146/313 (46%), Gaps = 37/313 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E    +FE M+++GLKP++  Y AL+ AY   G+   A S + D+K  +   PDV     
Sbjct: 205 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ-NGIIPDV----- 258

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
                                         V+Y  +++ YG++++  + +  F  M+   
Sbjct: 259 ------------------------------VSYTCLLNSYGRSRQPGKAKEVF-LMMRKE 287

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T N++I AYG++G + +  + + +    G+K ++ ++  L  +  R+     +
Sbjct: 288 RRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNV 347

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +V+   Q R        YN  I ++  A  +EK    ++ M+ + +K +S+T+  L+S 
Sbjct: 348 DTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISG 407

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +     +  S L+++E+  + L    ++ ++ AY + G V +   +F  MK   C PD
Sbjct: 408 SCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPD 467

Query: 311 NITFATMIQAYNA 323
            I + +M+ AYNA
Sbjct: 468 VIAYTSMLHAYNA 480



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 137/334 (41%), Gaps = 48/334 (14%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
           S G+  +   Y + + +Y  +  L++A +    M+     K D  T++ILI    +  ++
Sbjct: 356 SRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRK-KKVKADSVTFTILISGSCRMSKY 414

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
                 L EM  L I  +   Y++++  Y K  +  E ES F+ M +  GC PD+    S
Sbjct: 415 PEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQM-KMAGCEPDVIAYTS 473

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR- 200
           M+ AY  S    K  + + E    G++ D    + L +++ + G    +  +MD M+++ 
Sbjct: 474 MLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKE 533

Query: 201 -------FF-------------------------FPT--VVTYNIVIETFGKAGHIEKME 226
                  FF                          P+  +   N ++  FGK+G +E M 
Sbjct: 534 IPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMM 593

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
           + F K+   G+  N  TY  L+      G   K   +L  +  + +      +  IIS  
Sbjct: 594 KLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFG 653

Query: 287 GQAGDVE-------KMGELFLTMKERHCVPDNIT 313
            ++  +E       K+GE    M+E   + D++T
Sbjct: 654 ERSAGIEFEPLIRQKLGE----MREECKINDSVT 683



 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 90/217 (41%), Gaps = 6/217 (2%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q  +A  +F  M   G +P V  YT+++ AY  S    +A     +M++ +  +PD    
Sbjct: 448 QVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEA-NGIEPDSIAC 506

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS--AM 126
           S L+++   F++      +   M  +  +    T     + +      +E + +     M
Sbjct: 507 SALMRA---FNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQM 563

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           ++       I   N M+  +G SG +E M K + +    GV  +++T  IL +     G 
Sbjct: 564 MDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGN 623

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
           + K   V+++M      P+   Y  +I    ++  IE
Sbjct: 624 WRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIE 660


>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           urticoides]
          Length = 423

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 152/333 (45%), Gaps = 39/333 (11%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKS---------------------------------- 57
           Y+ L++ +G+ GL D A S +  M+                                   
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 61

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  Y + KKF 
Sbjct: 62  SSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFL 121

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ ++ + N L
Sbjct: 122 EALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 180

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK     ++M+ RG+
Sbjct: 181 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGI 240

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY +AG V     
Sbjct: 241 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKR 300

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           L   +K     PDNI   T I      G  E A
Sbjct: 301 LLHELKR----PDNIPRDTAIHILAGAGRIEEA 329



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 167/357 (46%), Gaps = 41/357 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  + S G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 56  IFSRLKSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 114

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 115 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 173

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 174 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANN 230

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++ AY 
Sbjct: 231 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 290

Query: 253 KAGLIMKVDSILRQVENSDVI-LDTPF---------------FNCIISAYGQAGDV---E 293
           +AGL+     +L +++  D I  DT                 F   I A G+  D+   E
Sbjct: 291 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDA-GEVKDITVFE 349

Query: 294 KM-------------GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +M              E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 350 RMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 406



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 128/271 (47%), Gaps = 1/271 (0%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S FS +
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            +S G  PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y     
Sbjct: 61  -KSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKK 119

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN ++Y +
Sbjct: 120 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 179

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+  Y  A L  +   + R ++  ++  +   +N +I  YG+  + EK   L   M+ R 
Sbjct: 180 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG 239

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             P++IT++T+I  +  +G  + A  L  K+
Sbjct: 240 IEPNSITYSTIISIWGKVGKLDRAAMLFQKL 270


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 158/335 (47%), Gaps = 3/335 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  +PE A   F  +L  GL+ ++ +   L+  + ++   DEA   +        C PDV
Sbjct: 123 RAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDV 182

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSF 123
           ++YSIL+KS     +    + +L  M+  G  CS   V Y+T+IDG+ K     +    F
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLF 242

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+ G   PD  T +S++ A   +  ++K E +  +    GV  +  T N L   Y  
Sbjct: 243 KEMVQRG-IPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSS 301

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +   V   M++    P VVT ++++ +  K G I++  + F  M  +G  PN  +
Sbjct: 302 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFS 361

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +++ Y+  G ++ +  +   +    +  D   FN +I AY   G ++K   +F  M+
Sbjct: 362 YTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMR 421

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +    PD +T+ T+I A   +G  + A    N+MI
Sbjct: 422 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 152/328 (46%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF+ M+  G+ P    Y+++V A  ++  +D+A + +  M +     P+ +TY+ L
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVN-KGVLPNNWTYNNL 295

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I   +   ++    ++  EM    I    VT + ++    K  K +E    F  M   G 
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
            +P++F+   M++ Y   G +  M   ++     G+  DI T N+L K+Y   GM DK  
Sbjct: 356 -NPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM 414

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 415 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 474

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G ++K   ++ ++ N+ + LD  FF+ II+   + G V     +F         P  
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA 534

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
           + ++ ++  Y  +G  E A  + + M++
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVS 562



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 148/335 (44%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A      M++ G+ P+   Y  L+  Y  +G   EA     +M+  S   P
Sbjct: 264 LCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS-ILP 322

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T S+L+ S  K+ +      +   M+  G   +  +Y  +++GY       +M   F
Sbjct: 323 DVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLF 382

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+   G  PDI+T N +I AY N G ++K    +NE    GVK D+ T   +  +  R
Sbjct: 383 DLML-GDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 441

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D      + M  +   P    Y+ +I+ F   G + K +E   ++ + GM  + + 
Sbjct: 442 IGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVF 501

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + S+++   K G +M   +I     N  +      ++ ++  Y   G +EK   +F  M 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                P+++ + T++  Y  +G  +   +L  +M+
Sbjct: 562 SAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 4/292 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           M+M   CK  + ++A  +F+ M   G  P+V  YT +++ Y   G L +  + + D+   
Sbjct: 329 MLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVD-MTDLFDLMLG 387

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PD+YT+++LIK+       D    I  EM   G++   VTY T+I    +  K ++
Sbjct: 388 DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDD 447

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F+ M++ G   PD +  + +I  +   G++ K ++  +E    G+  DI   + + 
Sbjct: 448 AMEKFNQMIDQG-VAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSII 506

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +  + G     +++ D        PT V Y+++++ +   G +EK    F  M   G++
Sbjct: 507 NNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE 566

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           PN + Y +LV+ Y K G I +  S+ R++    +   T  +N II    +AG
Sbjct: 567 PNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAG 618



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 128/279 (45%), Gaps = 34/279 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +TY+IL+  CT+ HR +L      ++   G+  + +  N ++ G+ +AK+ +E    
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDI 168

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
                   GC PD+F+ + ++ +  +                                 G
Sbjct: 169 LLHRTPELGCVPDVFSYSILLKSLCDQ--------------------------------G 196

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G  D +  +M         P VV Y+ VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 197 KSGQADDLLRMMA-EGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFV 255

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S+V A  KA  + K ++ LRQ+ N  V+ +   +N +I  Y   G  ++   +F  M
Sbjct: 256 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +    +PD +T + ++ +    G  + A+++ + M AMK
Sbjct: 316 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMK 353



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 157/364 (43%), Gaps = 39/364 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF++ML DG+ P +  +  L+ AY   G+LD+A    N+M+     KPDV TY  +I + 
Sbjct: 381 LFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRD-HGVKPDVVTYRTVIAAL 439

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESS---------- 122
            +  + D   +   +M   G+      Y+ +I G+   G   K +E+ S           
Sbjct: 440 CRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDI 499

Query: 123 --FSAMVES-------------------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
             FS+++ +                    G HP     + ++  Y   G +EK  + ++ 
Sbjct: 500 VFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDA 559

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G++ +      L   Y + G  D+  S+   M ++   P+ + YNI+I+   +AG 
Sbjct: 560 MVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGR 619

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
               +  F +M   G+  N  TY  ++    K     +   + +++   +V ++    N 
Sbjct: 620 TVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 679

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +I+   Q   VE+  +LF ++     VP  +T++ MI      G+ E A+++ + M    
Sbjct: 680 MIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSM---- 735

Query: 342 ENSG 345
           +N+G
Sbjct: 736 QNAG 739



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 123/263 (46%), Gaps = 2/263 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +F++ ++ GL P+  VY+ L+  Y   G +++A    + M S +  +P+   Y  L+
Sbjct: 518 AQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVS-AGIEPNDVVYGTLV 576

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K  R D    +  EM   GI+ S + YN IIDG  +A +    +  F  M ESG  
Sbjct: 577 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG-I 635

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             +  T N ++     +   ++    + E   M VK +I TLN +     +    ++ + 
Sbjct: 636 AMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKD 695

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   + +    P VVTY+I+I    K G +E+ E+ F  M++ G +P+S     +V    
Sbjct: 696 LFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELL 755

Query: 253 KAGLIMKVDSILRQVENSDVILD 275
           K   I++  + L +++  +  L+
Sbjct: 756 KKNEIVRAGAYLSKIDERNFSLE 778


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 153/312 (49%), Gaps = 10/312 (3%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + E M   G+ P+  +Y  ++  Y + G    AF    DM S +  KPD+ TY+IL+ + 
Sbjct: 328 ILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVS-AGLKPDIVTYNILVHAF 386

Query: 76  TKFHRFD----LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
            K  R D    ++E I A      IE    TY +I+DGY K    ++    F   +++ G
Sbjct: 387 CKAGRMDKALGVLENIQANRLLPTIE----TYTSILDGYVKGGHIQKALEVFD-RIKTAG 441

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P + + NS++S    +  +E      +E    GV  + ++   LT+ Y RAG  +K  
Sbjct: 442 LRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAF 501

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +   M+K      +V Y  +++   K+G +++  E F+++   G+K N ITYC+++  +
Sbjct: 502 GMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGW 561

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           ++ G + K   +L+ ++     LDT  +   I A  ++GD E++ E    M+E+    + 
Sbjct: 562 ARKGELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNA 621

Query: 312 ITFATMIQAYNA 323
            T+ T+I  + A
Sbjct: 622 RTYTTLIHGWLA 633



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 162/354 (45%), Gaps = 55/354 (15%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A    E MLS G++ +  V+ +++S Y  +G  + A       K+  +  P    Y+ 
Sbjct: 183 EGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKA-ENLVPGGIVYNS 241

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++++  +    + +E +LA+M   G + +   Y T+++G+ + +  E+  S F  +   G
Sbjct: 242 IVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACG 301

Query: 131 --------GCHPDIFT---------------------LNSMISA-----YGNSGNIEKME 156
                   GC   +FT                      N MI A     Y   G+     
Sbjct: 302 LSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAF 361

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           K + +    G+K DI T NIL  ++ +AG  DK   V++ +Q     PT+ TY  +++ +
Sbjct: 362 KVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGY 421

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            K GHI+K  E F ++K  G++P  ++Y SL+S  +KA          RQ+EN+ ++LD 
Sbjct: 422 VKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKA----------RQMENARLMLDE 471

Query: 277 PFFNCII----------SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
              N ++            Y +AGDVEK   +F  MK+ +   D + +  +++A
Sbjct: 472 MLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKA 525



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 146/327 (44%), Gaps = 2/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E    L   M  +G + ++ +YT +++ + +    ++  S  + +K+     P   TY  
Sbjct: 253 ETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACG-LSPTAATYGC 311

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++K  TK         IL EM   G+  + + Y  I+DGY +   F      +  MV S 
Sbjct: 312 IVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMV-SA 370

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PDI T N ++ A+  +G ++K            +   I+T   +   Y + G   K 
Sbjct: 371 GLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKA 430

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V D ++     P VV+YN ++    KA  +E       +M   G+ PN  +Y +L   
Sbjct: 431 LEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEG 490

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y++AG + K   + ++++  ++ +D   +  ++ A  ++G +++  E+F  + +     +
Sbjct: 491 YARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHN 550

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            IT+ TM+  +   G    A++L   M
Sbjct: 551 RITYCTMLDGWARKGELSKARDLLKDM 577



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 149/327 (45%), Gaps = 2/327 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A   FE M +  +KP+V +YT+L+ AY ++  ++ A +   +M S    + +   +  +I
Sbjct: 150 ARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLS-QGIQLNEAVFCSII 208

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                    +  E    +     +    + YN+I+  Y +A   E +E+  + M E G  
Sbjct: 209 SGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEG-F 267

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             ++    ++++ +    + EK   +++     G+     T   + K + +AG   K   
Sbjct: 268 QGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALD 327

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +++ M K    P  + Y ++++ + + G      + ++ M   G+KP+ +TY  LV A+ 
Sbjct: 328 ILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFC 387

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           KAG + K   +L  ++ + ++     +  I+  Y + G ++K  E+F  +K     P  +
Sbjct: 388 KAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVV 447

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           ++ +++         E A+ + ++M+A
Sbjct: 448 SYNSLLSGLAKARQMENARLMLDEMLA 474



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 132/280 (47%), Gaps = 2/280 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + ++A  + E + ++ L P+++ YT+++  Y + G + +A    + +K+ +  +P V
Sbjct: 388 KAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKT-AGLRPGV 446

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            +Y+ L+    K  + +    +L EM   G+  +  +Y  + +GY +A   E+    F  
Sbjct: 447 VSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQR 506

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M +      DI    +++ A   SG +++  + + +    G+K +  T   +   + R G
Sbjct: 507 MKKEN-LAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKG 565

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              K R ++  MQK  F    + Y   I+   ++G  E++ E    M+ + ++ N+ TY 
Sbjct: 566 ELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYT 625

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           +L+  +  A    +  S   Q + S + LD+   NC++S 
Sbjct: 626 TLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNCLLSG 665



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 2/152 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +Q E A L+ + ML++G+ P+   YTAL   Y ++G +++AF     MK   +   
Sbjct: 456 LAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKK-ENLAI 514

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  Y  L+K+C K        ++  +++  G++ + +TY T++DG+ +  +  +     
Sbjct: 515 DIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLL 574

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
             M +  G H D     S I A   SG+ E++
Sbjct: 575 KDM-QKHGFHLDTICYTSFIKACFRSGDTEEV 605



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 4/154 (2%)

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG + K+ +    + K    P +  Y ++++ + + G        F+ M+   +KPN   
Sbjct: 113 AGNWHKIVNAFQVIDK----PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHI 168

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL+ AY++A  +    +   ++ +  + L+   F  IIS Y  AG+ E     F   K
Sbjct: 169 YTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFK 228

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             + VP  I + +++QAY   G  E  + L  +M
Sbjct: 229 AENLVPGGIVYNSIVQAYCQAGNMETVEALLAQM 262



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 4/157 (2%)

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
           ++GN  K+    N F ++  K  ++   +L   Y R G     R+  + M+     P V 
Sbjct: 112 DAGNWHKI---VNAFQVID-KPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVH 167

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            Y  +I  + +A  +E      ++M  +G++ N   +CS++S Y+ AG     +    + 
Sbjct: 168 IYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKF 227

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           +  +++     +N I+ AY QAG++E +  L   M+E
Sbjct: 228 KAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEE 264


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 167/373 (44%), Gaps = 46/373 (12%)

Query: 9   QPEQASLLFEVML--SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           + ++A  L   M+  S G  P+V  Y  ++  + + G + +A +  ++M       PDV 
Sbjct: 205 RSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQ-QGVVPDVV 263

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TYS  I +  K    D  E +L +M   G E   VTYN +I GY    +++E    F  M
Sbjct: 264 TYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREM 323

Query: 127 VESGGCHPDIFTLNSMISA-----------------------------------YGNSGN 151
              G   PDIFT NS +S+                                   Y   G 
Sbjct: 324 TRRG-LMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGY 382

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +  M   +N     G+ AD    NIL  +YG+ GM D+   +   MQ+R   P   TY  
Sbjct: 383 VVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGT 442

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           VI  F + G +    + F +M   G+KP++I Y SL+  +   G ++K   ++ ++ +  
Sbjct: 443 VIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRG 502

Query: 272 VIL-DTPFFNCIISAYGQAGDVEKMGELF---LTMKERHCVPDNITFATMIQAYNALGMT 327
           +   +T FFN II++  + G V +  ++F   + + ER   PD ITF ++I  Y  +G  
Sbjct: 503 IPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGER---PDVITFNSLIDGYGLVGKM 559

Query: 328 EAAQNLENKMIAM 340
           E A  + + MI++
Sbjct: 560 EKAFGVLDAMISV 572



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 162/339 (47%), Gaps = 7/339 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  +P     LF   L  GLK  V V   L+     +   D+A + +         +PD 
Sbjct: 131 RAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDT 190

Query: 66  YTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            +YS ++KS  +  R     DL+  ++ +    G   + V+YNT+I G+ +  +  +  +
Sbjct: 191 ISYSTVLKSLCEDSRSQRALDLLHTMVKKSG--GCSPNVVSYNTVIHGFFREGEVSKACN 248

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M++ G   PD+ T +S I A   +  ++K E    +    G + D  T N +   Y
Sbjct: 249 LFHEMMQQG-VVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGY 307

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
              G + +   +   M +R   P + T N  + +  K G  ++  E+F  M  +G KP+ 
Sbjct: 308 SILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDL 367

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  L+  Y+  G ++ + ++   +E + ++ D   +N +I AYG+ G +++   +F  
Sbjct: 368 VTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQ 427

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           M+ER  +PD  T+ T+I A++ +G    A +  N+MIAM
Sbjct: 428 MQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAM 466



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 160/366 (43%), Gaps = 42/366 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M  +G+     VY  L+ AYG+ G++DEA      M+      PD +TY  +I + 
Sbjct: 389 LFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQE-RGVMPDAWTYGTVIAAF 447

Query: 76  TKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
           ++  R  D ++K   +M  +G++   + YN++I G+       + +   S M+  G   P
Sbjct: 448 SRMGRLADAMDK-FNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRP 506

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           +    NS+I++    G + + +  ++    +G + D+ T N L   YG  G  +K   V+
Sbjct: 507 NTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVL 566

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY--- 251
           D M      P VVTY+ +++ + + G I+     F++M  +G+KP +ITY  ++      
Sbjct: 567 DAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFND 626

Query: 252 ----------------------SKAGLIM----------KVDSILRQVENSDVILDTPFF 279
                                 S  G+I+          +  ++ +++   +V  +    
Sbjct: 627 GRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAII 686

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I A  +    E+  ELF ++     VP+  T+  MI      G  E A N    M +
Sbjct: 687 NTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADN----MFS 742

Query: 340 MKENSG 345
           + E SG
Sbjct: 743 LMEKSG 748



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 130/286 (45%), Gaps = 4/286 (1%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+    +A  +F++++  G +P V  + +L+  YG  G +++AF  ++ M SV   +PD
Sbjct: 519 CKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVG-IEPD 577

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TYS L+    +  R D    +  EM   G++ + +TY  I+ G     +    +    
Sbjct: 578 VVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCH 637

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+ESG    DI T   ++     +   ++    + +   M VK +I  +N +  +  + 
Sbjct: 638 EMIESGTTM-DISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKV 696

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              ++   + D +      P   TY ++I    K G +E+ +  F  M+  G  P+S   
Sbjct: 697 RKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLL 756

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            +++    + G I K  + L +V+   + L+    + ++S + + G
Sbjct: 757 NNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRKG 802



 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 2/142 (1%)

Query: 46  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
           DEA +    + ++ + K ++   + +I +  K  + +   ++   +S  G+  +A TY  
Sbjct: 665 DEAIALFKKLGAM-NVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGV 723

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           +I    K    EE ++ FS M E  GC P    LN++I      G I K   + ++ +  
Sbjct: 724 MITNLLKEGSVEEADNMFSLM-EKSGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGK 782

Query: 166 GVKADIQTLNILTKSYGRAGMY 187
            +  +  T +++   + R G Y
Sbjct: 783 TISLEASTASLMLSLFSRKGKY 804



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 36/180 (20%), Positives = 77/180 (42%), Gaps = 38/180 (21%)

Query: 198 QKRFFFPTVVTYNIVIE----------------TFGKAG----------------HIEKM 225
           + R   PTV TYNI+++                 F K G                H ++ 
Sbjct: 111 RPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRS 170

Query: 226 EEYFKKMKHR----GMKPNSITYCSLVSAYSKAGLIMKVDSILRQV--ENSDVILDTPFF 279
           ++    + HR    G++P++I+Y +++ +  +     +   +L  +  ++     +   +
Sbjct: 171 DDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSY 230

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I  + + G+V K   LF  M ++  VPD +T+++ I A       + A+ +  +MI+
Sbjct: 231 NTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMIS 290


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 164/344 (47%), Gaps = 8/344 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV LGK +  E   +L + M   GL+P+V  +T  +   G++G +DEA+     M     
Sbjct: 234 MVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDD-EG 292

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID---GYGKAKKFE 117
           C PD+ TY++LI +     + +  +++  +M   G +   V Y T++D    +G    F+
Sbjct: 293 CGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFK 352

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E    F + +E+ G  PD+ T   ++     + + ++    ++     G+  ++ T N L
Sbjct: 353 E----FWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTL 408

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                RAG  +    ++  M+     PT  TYNI I+ FGK+G   K  E F+KMK +G+
Sbjct: 409 ICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGI 468

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            PN +   + + + ++ G + +  ++   +  + +  D+  +N ++  Y + G V++   
Sbjct: 469 VPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVN 528

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           L   M    C PD I   ++I +    G  + A  + ++M  MK
Sbjct: 529 LLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMK 572



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 2/299 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M +DG  P V  +T LV    ++   DEAF+T + M+      P+++TY+ LI    +  
Sbjct: 358 MEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRK-QGILPNLHTYNTLICGLLRAG 416

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R +   K+L  M  +G++ +A TYN  ID +GK+ +  +   +F  M ++ G  P+I   
Sbjct: 417 RIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKM-KAKGIVPNIVAC 475

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N+ + +    G + + +  +N     G+  D  T N++ K Y + G  D+  +++  M +
Sbjct: 476 NASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIR 535

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P V+  N +I++  KAG +++  + F +MK   + P  +TY +L+S   K G + K
Sbjct: 536 NGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQK 595

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
              +   +       +T  FN ++  + +  +VE   ++F  M    C PD +T+ T+I
Sbjct: 596 AIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVI 654



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 143/307 (46%), Gaps = 2/307 (0%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E+A  LF+ M + G  P    +  L++ +G+SG + E F    +M S   CKPD  TY+I
Sbjct: 805  EKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMIS-RRCKPDAITYNI 863

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            +I S  K +  D       ++       +  TY  +IDG  K  + EE    F  M + G
Sbjct: 864  VISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYG 923

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
             C P+    N +I+ YG  G+ E   + +      G++ D+++  IL      AG  D+ 
Sbjct: 924  -CKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEA 982

Query: 191  RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
                + ++     P  + YN +I   GK+  +E+    + +M++RG+ P+  TY SL+  
Sbjct: 983  LYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLN 1042

Query: 251  YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               AG++ +   +  +++ + +  D   +N +I  Y  + + E    ++  M    C P+
Sbjct: 1043 LGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPN 1102

Query: 311  NITFATM 317
              T+A +
Sbjct: 1103 IGTYAQL 1109



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 145/342 (42%), Gaps = 37/342 (10%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y  L+    QSG   EA      M S    KP + TYS L+ +  K    +++  +L EM
Sbjct: 195 YNGLIHLLIQSGFCGEALEVYRRMVS-EGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
             LG+  +  T+   I   G+A K +E    F  M +  GC PD+ T   +I A  N+G 
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRM-DDEGCGPDLVTYTVLIDALCNAGQ 312

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +E  ++ + +    G K D      L   +   G  D  +     M+   + P VVT+ I
Sbjct: 313 LENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI 372

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +++   KA   ++    F  M+ +G+ PN  TY +L+    +AG I     +L  +E+  
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVG 432

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV----------------------- 308
           V      +N  I  +G++G+  K  E F  MK +  V                       
Sbjct: 433 VQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 309 ------------PDNITFATMIQAYNALGMTEAAQNLENKMI 338
                       PD++T+  M++ Y+ +G  + A NL ++MI
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 138/299 (46%), Gaps = 2/299 (0%)

Query: 24   GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
            G+ P++  Y  L+    +    ++A+    DMK+V  C PD +T+++L+    K  +   
Sbjct: 783  GISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVG-CAPDAFTFNMLLAVHGKSGKITE 841

Query: 84   IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            + ++  EM     +  A+TYN +I    K+   ++    F  +V S    P   T   +I
Sbjct: 842  LFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLV-SSDFRPTPRTYGPLI 900

Query: 144  SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                  G +E+  + + E +  G K +    NIL   YG+ G  +    +   M      
Sbjct: 901  DGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIR 960

Query: 204  PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
            P + +Y I+++    AG +++   YF ++K  G+ P+ I Y  +++   K+  + +  ++
Sbjct: 961  PDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALAL 1020

Query: 264  LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
              ++ N  ++ D   +N ++   G AG VE+   ++  ++     PD  T+  +I+ Y+
Sbjct: 1021 YNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYS 1079



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 121/248 (48%), Gaps = 2/248 (0%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            GK  +  +   L++ M+S   KP    Y  ++S+  +S  LD+A     D+ S SD +P 
Sbjct: 834  GKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVS-SDFRPT 892

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              TY  LI    K  R +   ++  EMS  G + +   +N +I+GYGK    E     F 
Sbjct: 893  PRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFK 952

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             MV   G  PD+ +   ++     +G +++   ++NE    G+  D    N +    G++
Sbjct: 953  RMVNE-GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKS 1011

Query: 185  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
               ++  ++ + M+ R   P + TYN ++   G AG +E+ +  +++++  G++P+  TY
Sbjct: 1012 QRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTY 1071

Query: 245  CSLVSAYS 252
             +L+  YS
Sbjct: 1072 NALIRGYS 1079



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 127/271 (46%), Gaps = 1/271 (0%)

Query: 63   PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            P + +Y+ LI    + H  +    +  +M  +G    A T+N ++  +GK+ K  E+   
Sbjct: 786  PTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845

Query: 123  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            +  M+ S  C PD  T N +IS+   S N++K   ++ +      +   +T   L     
Sbjct: 846  YKEMI-SRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLA 904

Query: 183  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            + G  ++   + + M      P    +NI+I  +GK G  E   + FK+M + G++P+  
Sbjct: 905  KVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLK 964

Query: 243  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            +Y  LV     AG + +      +++++ +  D   +N II+  G++  +E+   L+  M
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024

Query: 303  KERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            + R  VPD  T+ +++      GM E A+ +
Sbjct: 1025 RNRGIVPDLYTYNSLMLNLGLAGMVEQAKRM 1055



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 148/351 (42%), Gaps = 73/351 (20%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L K +  ++A   F+VM   G+ P++  Y  L+    ++G +++A   +  M+SV   +
Sbjct: 376 VLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVG-VQ 434

Query: 63  PDVYTYSILI----KSCTKFHRFDLIEKI------------------LAEMSYL------ 94
           P  YTY+I I    KS       +  EK+                  LAEM  L      
Sbjct: 435 PTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTM 494

Query: 95  -------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
                  G+   +VTYN ++  Y K  + +E  +  S M+ +G C PD+  +NS+I +  
Sbjct: 495 FNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG-CEPDVIVVNSLIDSLY 553

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            +G ++  E W                           M+D+M+ +          PTVV
Sbjct: 554 KAGRVD--EAWQ--------------------------MFDRMKDMK-------LSPTVV 578

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TYN ++   GK G ++K  E F+ M  +   PN+I++ +L+  + K   +     +  ++
Sbjct: 579 TYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM 638

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
              D   D   +N +I    +   V      F  +K +   PD++T  T++
Sbjct: 639 TVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMHPDHVTICTLL 688



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 2/178 (1%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K  + E+A  LFE M   G KP+  ++  L++ YG+ G  + A      M +    +P
Sbjct: 903  LAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVN-EGIRP 961

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            D+ +Y+IL+       R D       E+   G++   + YN II+G GK+++ EE  + +
Sbjct: 962  DLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALY 1021

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            + M  + G  PD++T NS++   G +G +E+ ++ Y E  L G++ D+ T N L + Y
Sbjct: 1022 NEM-RNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGY 1078



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 123/276 (44%), Gaps = 1/276 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           + D+ TY  + K+ +       +  +L +M   G   +A +YN +I    ++    E   
Sbjct: 154 RRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALE 213

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +  MV S G  P + T ++++ A G   + E +     E   +G++ ++ T  I  +  
Sbjct: 214 VYRRMV-SEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVL 272

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           GRAG  D+   +   M      P +VTY ++I+    AG +E  +E F KMK  G KP+ 
Sbjct: 273 GRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQ 332

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           + Y +L+  ++  G +        Q+E    + D   F  ++    +A D ++    F  
Sbjct: 333 VIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDV 392

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M+++  +P+  T+ T+I      G  E A  L   M
Sbjct: 393 MRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTM 428



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 120/280 (42%), Gaps = 7/280 (2%)

Query: 61   CKPDVYT---YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            C+ D +      +L K   + + + + +K   +   LGI  +  +YN +I    +    E
Sbjct: 749  CREDSFLIPLVRVLCKHKRELYAYQIFDKFTKK---LGISPTLASYNCLIGELLEVHYTE 805

Query: 118  EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
            +    F  M ++ GC PD FT N +++ +G SG I ++ + Y E      K D  T NI+
Sbjct: 806  KAWDLFKDM-KNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 178  TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              S  ++   DK       +    F PT  TY  +I+   K G +E+    F++M   G 
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGC 924

Query: 238  KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            KPN   +  L++ Y K G       + +++ N  +  D   +  ++     AG V++   
Sbjct: 925  KPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALY 984

Query: 298  LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             F  +K     PD I +  +I         E A  L N+M
Sbjct: 985  YFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 3/209 (1%)

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T N M+        +E M   +       ++ D+ T   + K+    G   +M +V++ M
Sbjct: 124 TCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKM 183

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +K  F     +YN +I    ++G   +  E +++M   G+KP+  TY +L+ A  K    
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS 243

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
             V  +L+++E+  +  +   F   I   G+AG +++  E+F  M +  C PD +T+  +
Sbjct: 244 EMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVL 303

Query: 318 IQAYNALGMTEAAQNLENKMIAMKENSGK 346
           I A    G  E A+ L    + MK N  K
Sbjct: 304 IDALCNAGQLENAKEL---FVKMKANGHK 329



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 1/225 (0%)

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           K E+M + F  M +      D+ T  ++  A    G + +M    N+    G   +  + 
Sbjct: 137 KVEDMAAVFEFM-QKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSY 195

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N L     ++G   +   V   M      P++ TY+ ++   GK    E +    K+M+ 
Sbjct: 196 NGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMED 255

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G++PN  T+   +    +AG I +   I R++++     D   +  +I A   AG +E 
Sbjct: 256 LGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLEN 315

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             ELF+ MK     PD + + T++  +N  G  +  +   ++M A
Sbjct: 316 AKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEA 360



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            M+ LG     EQA  ++E +   GL+P V  Y AL+  Y  S   + A++   +M  V  
Sbjct: 1040 MLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNM-MVDG 1098

Query: 61   CKPDVYTYSIL 71
            C P++ TY+ L
Sbjct: 1099 CNPNIGTYAQL 1109


>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
 gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 151/301 (50%), Gaps = 4/301 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+ P +  +  ++SAY       +A S    MK  +  +PD  T++I+I   +K  
Sbjct: 239 MTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG-AKVRPDTTTFNIIIYCLSKLG 297

Query: 80  RFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           +      +   M     EC    VT+ +I+  Y    + E   + F AMV + G  P+I 
Sbjct: 298 QSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMV-AEGLKPNIV 356

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           + N+++ AY   G          +    G+  D+ +   L  SYGR+    K + V   M
Sbjct: 357 SYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMM 416

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +K    P VVTYN +I+ +G  G + +  E F++M+  G+KPN ++ C+L++A S++   
Sbjct: 417 RKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKK 476

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           + VD++L   ++  + L+T  +N  I +Y  A ++EK   L+ +M+++    D++TF  +
Sbjct: 477 VNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTIL 536

Query: 318 I 318
           I
Sbjct: 537 I 537



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 149/310 (48%), Gaps = 4/310 (1%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D+Y  ++  + +   +D+A     +M+  S CKPD  TY  LI +  +  ++     ++ 
Sbjct: 144 DIYNMMIRLHARHNWVDQARGLFFEMQKWS-CKPDAETYDALINAHGRAGQWRWAMNLMD 202

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M    I  S  TYN +I+  G +  + E       M ++G   PD+ T N ++SAY + 
Sbjct: 203 DMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNG-VGPDLVTHNIVLSAYKSG 261

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVV 207
               K   ++       V+ D  T NI+     + G   +   + + M+++     P VV
Sbjct: 262 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVV 321

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           T+  ++  +   G IE     F+ M   G+KPN ++Y +L+ AY+  G+     S+L  +
Sbjct: 322 TFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDI 381

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           + + +I D   + C++++YG++    K  E+FL M++    P+ +T+  +I AY + G  
Sbjct: 382 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFL 441

Query: 328 EAAQNLENKM 337
             A  +  +M
Sbjct: 442 AEAVEIFRQM 451



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 146/313 (46%), Gaps = 37/313 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E    +FE M+++GLKP++  Y AL+ AY   G+   A S + D+K  +   PDV     
Sbjct: 337 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ-NGIIPDV----- 390

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
                                         V+Y  +++ YG++++  + +  F  M+   
Sbjct: 391 ------------------------------VSYTCLLNSYGRSRQPGKAKEVF-LMMRKE 419

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T N++I AYG++G + +  + + +    G+K ++ ++  L  +  R+     +
Sbjct: 420 RRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNV 479

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +V+   Q R        YN  I ++  A  +EK    ++ M+ + +K +S+T+  L+S 
Sbjct: 480 DTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISG 539

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +     +  S L+++E+  + L    ++ ++ AY + G V +   +F  MK   C PD
Sbjct: 540 SCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPD 599

Query: 311 NITFATMIQAYNA 323
            I + +M+ AYNA
Sbjct: 600 VIAYTSMLHAYNA 612



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 125/307 (40%), Gaps = 37/307 (12%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
           S G+  +   Y + + +Y  +  L++A +    M+     K D  T++ILI    +  ++
Sbjct: 488 SRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRK-KKVKADSVTFTILISGSCRMSKY 546

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
                 L EM  L I  +   Y++++  Y K  +  E ES F+ M +  GC PD+    S
Sbjct: 547 PEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQM-KMAGCEPDVIAYTS 605

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR- 200
           M+ AY  S    K  + + E    G++ D    + L +++ + G    +  +MD M+++ 
Sbjct: 606 MLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKE 665

Query: 201 -------FF-------------------------FPT--VVTYNIVIETFGKAGHIEKME 226
                  FF                          P+  +   N ++  FGK+G +E M 
Sbjct: 666 IPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMM 725

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
           + F K+   G+  N  TY  L+      G   K   +L  +  + +      +  IIS  
Sbjct: 726 KLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFG 785

Query: 287 GQAGDVE 293
            ++  +E
Sbjct: 786 ERSAGIE 792



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 90/217 (41%), Gaps = 6/217 (2%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q  +A  +F  M   G +P V  YT+++ AY  S    +A     +M++ +  +PD    
Sbjct: 580 QVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEA-NGIEPDSIAC 638

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS--AM 126
           S L+++   F++      +   M  +  +    T     + +      +E + +     M
Sbjct: 639 SALMRA---FNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQM 695

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           ++       I   N M+  +G SG +E M K + +    GV  +++T  IL +     G 
Sbjct: 696 MDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGN 755

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
           + K   V+++M      P+   Y  +I    ++  IE
Sbjct: 756 WRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIE 792


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 164/334 (49%), Gaps = 4/334 (1%)

Query: 7    CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            CKQ +  +A  L +   S G+      Y +L+       L+D A     +MK +  C PD
Sbjct: 810  CKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELG-CGPD 868

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +TY++L+ +  K  R + + K+  EM   G E + VTYNTII G  K+++ E+    + 
Sbjct: 869  EFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYY 928

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             ++ S G  P   T   ++     +G IE  E  +NE    G KA+    NIL   +  A
Sbjct: 929  NLM-SQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIA 987

Query: 185  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
            G  +K+  +   M  +   P + +Y I+I+T  KAG +     YF+++   G++P+ ITY
Sbjct: 988  GNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITY 1047

Query: 245  CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
              L+    K+  + +  S+  +++   ++ +   +N +I   G+AG   + G+++  +  
Sbjct: 1048 NLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLT 1107

Query: 305  RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +   P+  T+  +I+ Y+  G T++A     +MI
Sbjct: 1108 KGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMI 1141



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 146/309 (47%), Gaps = 2/309 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A  +++VM+ DG+ PSV  Y+ L+ A+G+   ++     + +M++    KP+VY+Y+I
Sbjct: 256 REALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEA-HGVKPNVYSYTI 314

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            I+   +  RFD   +ILAEM   G +   +T+  +I     A +  + +  F  M +S 
Sbjct: 315 CIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSD 374

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T  +++  + ++G  + + + +N     G   ++     +  +  + G   + 
Sbjct: 375 Q-KPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 433

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + D M+++   P   +YN +I  F KA       E FK M   G KPN  T+   ++ 
Sbjct: 434 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINY 493

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K+G  +K       +++  ++ D    N ++    ++G +     +F  +K     PD
Sbjct: 494 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 553

Query: 311 NITFATMIQ 319
            IT+  MI+
Sbjct: 554 TITYTMMIK 562



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 147/303 (48%), Gaps = 2/303 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++  M +DG   +V  YTA++ A  Q G + EA    ++MK      P+ Y+Y+ LI   
Sbjct: 401 IWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQ-KGIVPEQYSYNSLISGF 459

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  RF    ++   M   G + +  T+   I+ YGK+ +  +    +  M +S G  PD
Sbjct: 460 LKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELM-KSKGIVPD 518

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +   N+++     SG +   ++ ++E   MGV  D  T  ++ K   +A  +D+   +  
Sbjct: 519 VVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFY 578

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M +    P V+  N +I+T  KAG  ++  + F ++K   ++P   TY +L++   + G
Sbjct: 579 DMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREG 638

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +V  +L ++ +S+   +   +N I+    + G V    ++  +M  + C+PD  ++ 
Sbjct: 639 KVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYN 698

Query: 316 TMI 318
           T+I
Sbjct: 699 TVI 701



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 162/371 (43%), Gaps = 35/371 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV  GK +  E    L   M + G+KP+V  YT  +   GQ+   DEA+  + +M++   
Sbjct: 281 MVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMEN-EG 339

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG--------- 111
           CKPDV T+++LI+      R    + +  +M     +   VTY T++D +          
Sbjct: 340 CKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVM 399

Query: 112 ------KAKKFEEMESSFSAMVES-------------------GGCHPDIFTLNSMISAY 146
                 KA  + +   +++A++++                    G  P+ ++ NS+IS +
Sbjct: 400 EIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGF 459

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +       + +   ++ G K +  T  +    YG++G   K     + M+ +   P V
Sbjct: 460 LKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDV 519

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V  N V+    K+G +   +  F ++K  G+ P++ITY  ++   SKA    +   I   
Sbjct: 520 VAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYD 579

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +  ++ + D    N +I    +AG  ++  ++F  +KE +  P + T+ T++      G 
Sbjct: 580 MIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGK 639

Query: 327 TEAAQNLENKM 337
            +   +L  +M
Sbjct: 640 VKEVMHLLEEM 650



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 141/330 (42%), Gaps = 2/330 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
             A +   VM   G+  +   Y  LV    +SG   EA      M  V    P V TYS+
Sbjct: 221 RSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYKVMM-VDGVVPSVRTYSV 279

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  K    + +  +L EM   G++ +  +Y   I   G+A++F+E     + M E+ 
Sbjct: 280 LMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEM-ENE 338

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PD+ T   +I    ++G I   +  + +      K D  T   L   +   G    +
Sbjct: 339 GCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSV 398

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + + M+   +   VV Y  VI+   + G + +  E F +MK +G+ P   +Y SL+S 
Sbjct: 399 MEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISG 458

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + KA        + + ++      +       I+ YG++G+  K  + +  MK +  VPD
Sbjct: 459 FLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 518

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +    ++      G    A+ + +++ AM
Sbjct: 519 VVAGNAVLFGLAKSGRLGMAKRVFHELKAM 548



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 110/240 (45%), Gaps = 2/240 (0%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K ++ EQA  L+  ++S G  P+   Y  L+    ++G +++A +  N+M     CK 
Sbjct: 914  LVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG-CKA 972

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            +   Y+IL+         + +  +  +M   GI     +Y  IID   KA +  +  + F
Sbjct: 973  NCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYF 1032

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              ++E G   PD+ T N +I   G S  +E+    +NE    G+  ++ T N L    G+
Sbjct: 1033 RQLLEMG-LEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGK 1091

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            AG   +   + + +  + + P V TYN +I  +  +G  +     + +M   G  PNS T
Sbjct: 1092 AGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSST 1151



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 2/166 (1%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E+   LF+ M+  G+ P +  YT ++    ++G L++  +    +  +   +PD+ TY++
Sbjct: 991  EKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMG-LEPDLITYNL 1049

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            LI    K  R +    +  EM   GI  +  TYN++I   GKA K  E    +  ++ + 
Sbjct: 1050 LIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELL-TK 1108

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
            G  P++FT N++I  Y  SG+ +     Y    + G   +  T +I
Sbjct: 1109 GWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTCHI 1154



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/315 (19%), Positives = 127/315 (40%), Gaps = 5/315 (1%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82
           D  + + DV  AL SA G +  L+   S     + V       Y   ++        R  
Sbjct: 131 DERRAAEDVIHALRSADGPAEALERFRSAARRPRVVHTTASCNYMLDLM----RDHGRVG 186

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
            + ++   M    ++ +  T+  I  G G          +   M E+G    + +T N +
Sbjct: 187 DMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAG-IVLNAYTYNGL 245

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           +     SG   +  + Y    + GV   ++T ++L  ++G+    + +  ++  M+    
Sbjct: 246 VYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGV 305

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P V +Y I I   G+A   ++      +M++ G KP+ IT+  L+     AG I     
Sbjct: 306 KPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKD 365

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           +  +++ SD   D   +  ++  +   G+ + + E++  MK      + + +  +I A  
Sbjct: 366 VFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALC 425

Query: 323 ALGMTEAAQNLENKM 337
            +G    A  + ++M
Sbjct: 426 QVGRVFEALEMFDEM 440



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 126/320 (39%), Gaps = 4/320 (1%)

Query: 20   MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
            M + G  P +  Y  ++    +    +EAFS    MK V    PD  T   ++ S  K  
Sbjct: 685  MTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV--LIPDYATLCTILPSFVKIG 742

Query: 80   RFDLIEKILAE-MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
                   I+ E     G +    + +++++G  K K   E    F+ ++ S G   D F 
Sbjct: 743  LMKEALHIIKEYFLQPGSKTDRSSCHSLMEGILK-KAGTEKSIEFAEIIASSGITLDDFF 801

Query: 139  LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
            L  +I          +  +   +F   GV     + N L        + D    +   M+
Sbjct: 802  LCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMK 861

Query: 199  KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
            +    P   TYN++++  GK+  IE+M +  ++M  +G +   +TY +++S   K+  + 
Sbjct: 862  ELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLE 921

Query: 259  KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
            +   +   + +         +  ++    +AG +E    LF  M E  C  +   +  ++
Sbjct: 922  QAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILL 981

Query: 319  QAYNALGMTEAAQNLENKMI 338
              +   G TE   +L   M+
Sbjct: 982  NGHRIAGNTEKVCHLFQDMV 1001


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 153/313 (48%), Gaps = 4/313 (1%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLIE 85
           +V VY A++  Y ++G   +    ++ M+S   C+PD+ +++ LI +  K      +L  
Sbjct: 221 TVQVYNAMMGVYARTGRFTKVQELLDLMRS-RGCEPDLVSFNTLINARLKSGTMVTNLAI 279

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           ++L E+   GI+   +TYNT+I    +    EE    ++ MV +  C PD++T N+MIS 
Sbjct: 280 ELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMV-AHRCQPDLWTYNAMISV 338

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           YG  G   +  + + +    G   D  T N L  ++ R G  DK++ + + M K  F   
Sbjct: 339 YGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKD 398

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
            +TYN +I  +GK G  +   + +  MK  G  P+++TY  L+ +  KA +I +   ++ 
Sbjct: 399 EMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMS 458

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++ N+ V      F+ +I  Y +AG   +  E F  M      PD++ ++ M+       
Sbjct: 459 EMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFN 518

Query: 326 MTEAAQNLENKMI 338
            +  A  L  +M+
Sbjct: 519 ESGKAMKLYQEMV 531



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 149/306 (48%), Gaps = 4/306 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLL--DEAFSTINDMKSVSDCKPDVYTYSILIK 73
           L ++M S G +P +  +  L++A  +SG +  + A   +N+++  S  +PD+ TY+ LI 
Sbjct: 244 LLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRR-SGIQPDIITYNTLIS 302

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
           +C++    +   K+  +M     +    TYN +I  YG+     E    F  + ES G  
Sbjct: 303 ACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDL-ESKGFL 361

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           PD  T NS++ A+   GN++K+++   +   MG   D  T N +   YG+ G +D    +
Sbjct: 362 PDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQL 421

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
              M+     P  VTY ++I++ GKA  I++  E   +M +  +KP   T+ +L+  Y+K
Sbjct: 422 YSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAK 481

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           AG  ++ +     +  S +  D   ++ ++    +  +  K  +L+  M      PD+  
Sbjct: 482 AGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHAL 541

Query: 314 FATMIQ 319
           +  M++
Sbjct: 542 YEVMLR 547



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 134/303 (44%), Gaps = 2/303 (0%)

Query: 31   VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
            V+ AL+ AY  SG  + A +  N M       P V + + L+++     R D +  ++ E
Sbjct: 784  VWNALIHAYAASGCYERARAIFNTMMR-DGPSPTVDSVNGLMQALIVDGRLDELYVVIQE 842

Query: 91   MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
            +  +G + S  +   ++D +  A    E++  +  M ++ G  P +     MI       
Sbjct: 843  LQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGM-KAAGYFPTMHLYRIMIGLLAKGK 901

Query: 151  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
             +  +E   +E  +   K D+   N + K Y   G + K   V   +Q+    P   TYN
Sbjct: 902  RVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYN 961

Query: 211  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             +I  + +    E+      +M+  G++P   TY SL+SA+ K  ++ + + +   + + 
Sbjct: 962  TLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSK 1021

Query: 271  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +  LD  F++ ++  +  +G+  K  +L   MKE    P   T   ++ +Y+  G  E A
Sbjct: 1022 ECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEA 1081

Query: 331  QNL 333
            + +
Sbjct: 1082 EKV 1084



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 144/345 (41%), Gaps = 37/345 (10%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E+A  +F  M+ DG  P+VD    L+ A    G LDE +  I +++ +   K    + ++
Sbjct: 799  ERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMG-FKISKSSITL 857

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            ++ +         ++KI   M   G   +   Y  +I    K K+  ++E+  S M E  
Sbjct: 858  MLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEM-EVA 916

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
               PD+   NS++  Y   G+ +K  + Y      G+K D  T N L   Y R    ++ 
Sbjct: 917  RFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEG 976

Query: 191  RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK------------------- 231
             S+M  M++    P + TY  +I  FGK   +E+ EE F+                    
Sbjct: 977  LSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKM 1036

Query: 232  ----------------MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                            MK  G++P   T   L+ +YS +G   + + +L  ++   + L 
Sbjct: 1037 FRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLS 1096

Query: 276  TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            T  ++ +I AY + GD     +  + MK+    PD+  +   ++A
Sbjct: 1097 TLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRA 1141



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 4/251 (1%)

Query: 3    MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD-EAFSTINDMKSVSDC 61
            +L K K+      +   M     KP + ++ +++  Y  +G+ D +    +  +   +  
Sbjct: 896  LLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLY--TGIGDFKKTGQVYQLIQEAGL 953

Query: 62   KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            KPD  TY+ LI    +  R +    ++ EM  +G+E    TY ++I  +GK +  E+ E 
Sbjct: 954  KPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEE 1013

Query: 122  SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             F  ++ S  C  D    + M+  + NSGN  K EK        GV+  I T+++L  SY
Sbjct: 1014 LFEGLL-SKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSY 1072

Query: 182  GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
              +G  ++   V+D ++      + + Y+ VI+ + K G      +   +MK  G++P+ 
Sbjct: 1073 SGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDH 1132

Query: 242  ITYCSLVSAYS 252
              +   V A S
Sbjct: 1133 RIWTCFVRAAS 1143



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/289 (20%), Positives = 116/289 (40%), Gaps = 35/289 (12%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y  L+  C +   F    +I ++M + G+E S   Y +++  Y K    E          
Sbjct: 679 YESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAE 738

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E G    D+     +I AYG     +K E             D +  N L  +Y  +G Y
Sbjct: 739 EKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCY 798

Query: 188 DKMRSVMDFMQKRFFFPTVVTYN-----------------------------------IV 212
           ++ R++ + M +    PTV + N                                   ++
Sbjct: 799 ERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITLM 858

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           ++ F  AG+I ++++ ++ MK  G  P    Y  ++   +K   +  V++++ ++E +  
Sbjct: 859 LDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARF 918

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             D   +N ++  Y   GD +K G+++  ++E    PD  T+ T+I  Y
Sbjct: 919 KPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMY 967



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 153/373 (41%), Gaps = 45/373 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK    ++A+ +   ML+  +KP++  ++AL+  Y ++G   EA  T + M   S  KP
Sbjct: 444 LGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLR-SGIKP 502

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   YS+++    +F+      K+  EM     +     Y  ++   GK  + E++    
Sbjct: 503 DHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVV 562

Query: 124 SAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             M E  G +  +  ++      + ++ N+ ++          G + D + L  +  SYG
Sbjct: 563 KDMEELCGMNSQVICSILVKGECFDHAANMLRLAI------SQGCELDRENLLSILGSYG 616

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI-EKMEEY------------- 228
            +G + + R ++DF+++       +    +I    KA  + + + EY             
Sbjct: 617 SSGRHLEARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARDFGLFCGSF 676

Query: 229 ----------------------FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
                                 F  M+  G++P+   Y S+V  Y K G       ++ Q
Sbjct: 677 TMYESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQ 736

Query: 267 VENSDVILD-TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            E   ++ D       +I AYG+    +K   L  +++++  + D   +  +I AY A G
Sbjct: 737 AEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASG 796

Query: 326 MTEAAQNLENKMI 338
             E A+ + N M+
Sbjct: 797 CYERARAIFNTMM 809



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 4/152 (2%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            ++M  + ++PE+   L   M   GL+P +D Y +L+SA+G+  ++++A      + S  +
Sbjct: 964  ILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLS-KE 1022

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            CK D   Y I++K           EK+L  M   G+E +  T + ++  Y  + + EE E
Sbjct: 1023 CKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAE 1082

Query: 121  SSFSAM-VESGGCHPDIFTLNSMISAYGNSGN 151
                 + VE  G        +S+I AY  +G+
Sbjct: 1083 KVLDNLKVE--GLPLSTLPYSSVIDAYLKNGD 1112


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 156/327 (47%), Gaps = 2/327 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++  +A  L + M    LKP+V VY  L+  + + G  DEAF  I +M + +  +P
Sbjct: 197 LCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA-AGVQP 255

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TY  L++   K  + D    +L +M         +TYN II+G+ +    ++     
Sbjct: 256 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLL 315

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M E+ G  P+++T + MI     SG  EK      E    G+K +      L   Y R
Sbjct: 316 SEM-ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR 374

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G       + D M K    P +  YN +I    K G +E+  +YF +M+ RG+ PN  T
Sbjct: 375 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 434

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+  Y K G +   + +++++ ++ +  +   +  ++ +Y ++ D+EK+   F +M 
Sbjct: 435 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSML 494

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAA 330
           ++  + DN  +  +I   ++ G  EAA
Sbjct: 495 DQGVMLDNRIYGILIHNLSSSGNMEAA 521



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 154/333 (46%), Gaps = 2/333 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K ++ + A  +   M   G   +   Y  L++   +SG ++EAF    DM+      PD 
Sbjct: 129 KVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYG-LVPDG 187

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           +TY  LI    K  R +  + +L EMS   ++ + V Y  +IDG+ +    +E       
Sbjct: 188 FTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKE 247

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           MV + G  P+  T ++++      G +++      +      + D  T N++ + + R  
Sbjct: 248 MV-AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHH 306

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
                  ++  M+     P V TY+I+I    ++G  EK  +  ++M  +G+KPN+  Y 
Sbjct: 307 NKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYA 366

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+S Y + G +     I  ++   +V+ D   +N +I    + G VE+  + F  M+ER
Sbjct: 367 PLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQER 426

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +P+  T++ +I  Y   G  E+A+ L  +M+
Sbjct: 427 GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRML 459



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 150/335 (44%), Gaps = 4/335 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  +PE+AS L E M + GLKP+  VY  L+S Y + G +  A    + M  V +  
Sbjct: 336 GLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKV-NVL 394

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+Y Y+ LI   +K  R +   K  A+M   G+  +  TY+ +I GY K    E  E  
Sbjct: 395 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQL 454

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+++G    D+  ++ ++ +Y  S +IEK+   +      GV  D +   IL  +  
Sbjct: 455 VQRMLDTGLKPNDVIYID-LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLS 513

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            +G  +    V+  ++K    P V  Y+ +I    K    EK      +M  +G+ PN +
Sbjct: 514 SSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIV 573

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y +L+    K+G I    ++   +    ++ +   +  +I    + GD+     L+  M
Sbjct: 574 CYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEM 633

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 PD   ++ +    ++ G  E A  L  +M
Sbjct: 634 LATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 668



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 142/318 (44%), Gaps = 39/318 (12%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  Q ++ASLL + M+ D  +P    Y  ++  + +     +AF  +++M++ +   
Sbjct: 266 GLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMEN-AGIS 324

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+VYTYSI+I    +    +    +L EM+  G++ +A  Y  +I GY +          
Sbjct: 325 PNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEI 384

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +     PD++  NS+I      G +E+  K++ +                     
Sbjct: 385 FDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFAQ--------------------- 422

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                         MQ+R   P   TY+ +I  + K G +E  E+  ++M   G+KPN +
Sbjct: 423 --------------MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDV 468

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y  L+ +Y K+  I KV S  + + +  V+LD   +  +I     +G++E    +   +
Sbjct: 469 IYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEI 528

Query: 303 KERHCVPDNITFATMIQA 320
           ++   VPD   ++++I  
Sbjct: 529 EKNGSVPDVHVYSSLISG 546



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 128/260 (49%), Gaps = 7/260 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+ S  F+ ML  G+     +Y  L+     SG ++ AF  +++++  +   PDV+ YS 
Sbjct: 484 EKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEK-NGSVPDVHVYSS 542

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K    +    IL EMS  G++ + V YN +IDG  K+       + F++++ + 
Sbjct: 543 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL-AK 601

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+  T  S+I      G+I      YNE    G+  D    ++LT     AG    +
Sbjct: 602 GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAG---DL 658

Query: 191 RSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
              M  +++ F     ++ ++N +++ F K G +++  +    +  RG+ PN++T  +++
Sbjct: 659 EQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENII 718

Query: 249 SAYSKAGLIMKVDSILRQVE 268
           S  S+AG + +V +I  +++
Sbjct: 719 SGLSEAGKLSEVHTIFVELQ 738



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/240 (18%), Positives = 112/240 (46%), Gaps = 1/240 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S    + ++D Y K+ + ++  +    M+   G  P I   N+++     +  +  + K 
Sbjct: 46  SPAVLDVLVDTYKKSGRVQD-AAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKV 104

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
                  G+  D+ T + L ++Y +   +D  + V+  M++R      VTYN++I    +
Sbjct: 105 REFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCR 164

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
           +G +E+   + K M+  G+ P+  TY +L++   K+    +  ++L ++  +++  +   
Sbjct: 165 SGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVV 224

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  +I  + + G+ ++  ++   M      P+ IT+  +++    +G  + A  L  +M+
Sbjct: 225 YANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMV 284



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 2/221 (0%)

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           + S   A+ +SG   P +  L+ ++  Y  SG ++   +        G+   I+  N L 
Sbjct: 32  LASIHRALSDSGHRSPAV--LDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALL 89

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           K   RA     +  V +FM      P V TY+ +IE + K    +  ++   +M+ RG  
Sbjct: 90  KDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCG 149

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            N++TY  L++   ++G + +     + +E+  ++ D   +  +I+   ++    +   L
Sbjct: 150 LNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKAL 209

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              M      P+ + +A +I  +   G  + A  +  +M+A
Sbjct: 210 LDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA 250



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/252 (18%), Positives = 102/252 (40%), Gaps = 1/252 (0%)

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           +L+ +  K  R     +++  M   G+  S    N ++    +A     +      MV  
Sbjct: 52  VLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMV-G 110

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G  PD++T +++I AY      +  +K   E    G   +  T N+L     R+G  ++
Sbjct: 111 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 170

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
                  M+     P   TY  +I    K+    + +    +M    +KPN + Y +L+ 
Sbjct: 171 AFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLID 230

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            + + G   +   +++++  + V  +   ++ ++    + G +++   L   M      P
Sbjct: 231 GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 290

Query: 310 DNITFATMIQAY 321
           D IT+  +I+ +
Sbjct: 291 DTITYNLIIEGH 302



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 97/245 (39%), Gaps = 40/245 (16%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    E+A  + + M   G+ P++  Y AL+    +SG +  A +  N         
Sbjct: 546 GLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN--------- 596

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
                 SIL K                     G+  + VTY ++IDG  K          
Sbjct: 597 ------SILAK---------------------GLVPNCVTYTSLIDGSCKVGDISNAFYL 629

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           ++ M+ + G  PD F  + + +   ++G++E+      E  L G  A I + N L   + 
Sbjct: 630 YNEMLAT-GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFC 687

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   +   ++  +  R   P  +T   +I    +AG + ++   F +++ +  +  + 
Sbjct: 688 KRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAAR 747

Query: 243 TYCSL 247
            + SL
Sbjct: 748 HFSSL 752


>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
          Length = 815

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 151/301 (50%), Gaps = 4/301 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+ P +  +  ++SAY       +A S    MK  +  +PD  T++I+I   +K  
Sbjct: 239 MTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG-AKVRPDTTTFNIIIYCLSKLG 297

Query: 80  RFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           +      +   M     EC    VT+ +I+  Y    + E   + F AMV + G  P+I 
Sbjct: 298 QSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMV-AEGLKPNIV 356

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           + N+++ AY   G          +    G+  D+ +   L  SYGR+    K + V   M
Sbjct: 357 SYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMM 416

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +K    P VVTYN +I+ +G  G + +  E F++M+  G+KPN ++ C+L++A S++   
Sbjct: 417 RKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKK 476

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           + VD++L   ++  + L+T  +N  I +Y  A ++EK   L+ +M+++    D++TF  +
Sbjct: 477 VNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTIL 536

Query: 318 I 318
           I
Sbjct: 537 I 537



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 149/310 (48%), Gaps = 4/310 (1%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D+Y  ++  + +   +D+A     +M+  S CKPD  TY  LI +  +  ++     ++ 
Sbjct: 144 DIYNMMIRLHARHNWVDQARGLFFEMQKWS-CKPDAETYDALINAHGRAGQWRWAMNLMD 202

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M    I  S  TYN +I+  G +  + E       M ++G   PD+ T N ++SAY + 
Sbjct: 203 DMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNG-VGPDLVTHNIVLSAYKSG 261

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVV 207
               K   ++       V+ D  T NI+     + G   +   + + M+++     P VV
Sbjct: 262 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVV 321

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           T+  ++  +   G IE     F+ M   G+KPN ++Y +L+ AY+  G+     S+L  +
Sbjct: 322 TFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDI 381

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           + + +I D   + C++++YG++    K  E+FL M++    P+ +T+  +I AY + G  
Sbjct: 382 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFL 441

Query: 328 EAAQNLENKM 337
             A  +  +M
Sbjct: 442 AEAVEIFRQM 451



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 146/313 (46%), Gaps = 37/313 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E    +FE M+++GLKP++  Y AL+ AY   G+   A S + D+K  +   PDV     
Sbjct: 337 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ-NGIIPDV----- 390

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
                                         V+Y  +++ YG++++  + +  F  M+   
Sbjct: 391 ------------------------------VSYTCLLNSYGRSRQPGKAKEVF-LMMRKE 419

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T N++I AYG++G + +  + + +    G+K ++ ++  L  +  R+     +
Sbjct: 420 RRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNV 479

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +V+   Q R        YN  I ++  A  +EK    ++ M+ + +K +S+T+  L+S 
Sbjct: 480 DTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISG 539

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +     +  S L+++E+  + L    ++ ++ AY + G V +   +F  MK   C PD
Sbjct: 540 SCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPD 599

Query: 311 NITFATMIQAYNA 323
            I + +M+ AYNA
Sbjct: 600 VIAYTSMLHAYNA 612



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 138/340 (40%), Gaps = 60/340 (17%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
           S G+  +   Y + + +Y  +  L++A +    M+     K D  T++ILI    +  ++
Sbjct: 488 SRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRK-KKVKADSVTFTILISGSCRMSKY 546

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
                 L EM  L I  +   Y++++  Y K  +  E ES F+ M +  GC PD+    S
Sbjct: 547 PEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQM-KMAGCEPDVIAYTS 605

Query: 142 MISAYGNSGNIEKMEKWYNEFNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           M+ AY  S      EKW     L+      G++ D    + L +++ + G    +  +MD
Sbjct: 606 MLHAYNAS------EKWGKACELLLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD 659

Query: 196 FMQKR--------FF-------------------------FPT--VVTYNIVIETFGKAG 220
            M+++        FF                          P+  +   N ++  FGK+G
Sbjct: 660 LMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSG 719

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            +E M + F K+   G+  N  TY  L+      G   K   +L  +  + +      + 
Sbjct: 720 KVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYR 779

Query: 281 CIISAYGQAGDVE-------KMGELFLTMKERHCVPDNIT 313
            IIS   ++  +E       K+GE    M+E   + D++T
Sbjct: 780 DIISFGERSAGIEFEPLIRQKLGE----MREECKINDSVT 815



 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 91/217 (41%), Gaps = 6/217 (2%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q  +A  +F  M   G +P V  YT+++ AY  S    +A   + +M++ +  +PD    
Sbjct: 580 QVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELLLEMEA-NGIEPDSIAC 638

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS--AM 126
           S L+++   F++      +   M  +  +    T     + +      +E + +     M
Sbjct: 639 SALMRA---FNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQM 695

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           ++       I   N M+  +G SG +E M K + +    GV  +++T  IL +     G 
Sbjct: 696 MDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGN 755

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
           + K   V+++M      P+   Y  +I    ++  IE
Sbjct: 756 WRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIE 792


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 153/313 (48%), Gaps = 4/313 (1%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLIE 85
           +V VY A++  Y ++G   +    ++ M+S   C+PD+ +++ LI +  K      +L  
Sbjct: 196 TVQVYNAMMGVYARTGRFTKVQELLDLMRS-RGCEPDLVSFNTLINARLKSGTMVTNLAI 254

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           ++L E+   GI+   +TYNT+I    +    EE    ++ MV +  C PD++T N+MIS 
Sbjct: 255 ELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMV-AHRCQPDLWTYNAMISV 313

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           YG  G   +  + + +    G   D  T N L  ++ R G  DK++ + + M K  F   
Sbjct: 314 YGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKD 373

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
            +TYN +I  +GK G  +   + +  MK  G  P+++TY  L+ +  KA +I +   ++ 
Sbjct: 374 EMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMS 433

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++ N+ V      F+ +I  Y +AG   +  E F  M      PD++ ++ M+       
Sbjct: 434 EMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFN 493

Query: 326 MTEAAQNLENKMI 338
            +  A  L  +M+
Sbjct: 494 ESGKAMKLYQEMV 506



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 159/332 (47%), Gaps = 7/332 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLL--DEAFSTINDMKSVSDCKPDVYTYSILIK 73
           L ++M S G +P +  +  L++A  +SG +  + A   +N+++  S  +PD+ TY+ LI 
Sbjct: 219 LLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRR-SGIQPDIITYNTLIS 277

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
           +C++    +   K+  +M     +    TYN +I  YG+     E    F  + ES G  
Sbjct: 278 ACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDL-ESKGFL 336

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           PD  T NS++ A+   GN++K+++   +   MG   D  T N +   YG+ G +D    +
Sbjct: 337 PDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQL 396

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
              M+     P  VTY ++I++ GKA  I++  E   +M +  +KP   T+ +L+  Y+K
Sbjct: 397 YSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAK 456

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           AG  ++ +     +  S +  D   ++ ++    +  +  K  +L+  M      PD+  
Sbjct: 457 AGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHAL 516

Query: 314 FATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           +  M++    LG     +++   +  M+E  G
Sbjct: 517 YEVMLR---VLGKENREEDVHKVVKDMEELCG 545



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 140/348 (40%), Gaps = 60/348 (17%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y  ++  YG+ G  D AF   +DMK +S   PD  TY++LI S  K +      ++++EM
Sbjct: 377 YNTIIHMYGKRGQHDLAFQLYSDMK-LSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEM 435

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESS---------------FSAMV-------ES 129
               ++ +  T++ +I GY KA K  E E +               +S M+       ES
Sbjct: 436 LNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRFNES 495

Query: 130 GGC------------HPDIFTLNSMISAYGNSGNIEKMEKWYNEFN-LMGVKADI----- 171
           G               PD      M+   G     E + K   +   L G+ + +     
Sbjct: 496 GKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEELCGMNSQVICSIL 555

Query: 172 -------QTLNILTKSYGRA---GMYDKMRSVMDFMQKRFFFPTVVT---------YNIV 212
                     N+L  +  +      Y K R    F      F  +++         Y+I+
Sbjct: 556 VKGECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTEELFEGLLSKECKLDRSFYHIM 615

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           ++ F  +G+  K E+    MK  G++P   T   L+ +YS +G   + + +L  ++   +
Sbjct: 616 MKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGL 675

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            L T  ++ +I AY + GD     +  + MK+    PD+  +   ++A
Sbjct: 676 PLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRA 723



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 126/309 (40%), Gaps = 62/309 (20%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK    ++A+ +   ML+  +KP++  ++AL+  Y ++G   EA  T + M   S  KP
Sbjct: 419 LGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLR-SGIKP 477

Query: 64  DVYTYSILIKSCTKFH-----------------------------------RFDLIEKIL 88
           D   YS+++    +F+                                   R + + K++
Sbjct: 478 DHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVV 537

Query: 89  AEMSYL-----GIECS-----------------AVTYNTIIDGYGKAKKFE---EMESSF 123
            +M  L      + CS                 A++    +D YGKA+ F      E  F
Sbjct: 538 KDMEELCGMNSQVICSILVKGECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTEELF 597

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             ++ S  C  D    + M+  + NSGN  K EK        GV+  I T+++L  SY  
Sbjct: 598 EGLL-SKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSG 656

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G  ++   V+D ++      + + Y+ VI+ + K G      +   +MK  G++P+   
Sbjct: 657 SGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRI 716

Query: 244 YCSLVSAYS 252
           +   V A S
Sbjct: 717 WTCFVRAAS 725


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 164/369 (44%), Gaps = 41/369 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A L++E M++ G+ P +  YT +V+AY + G +DEAF+ + +M+  S C+P+V TY+ L
Sbjct: 239 KALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMER-SCCEPNVVTYNSL 297

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I            +K+LA MS  GI  ++ TY  +I GY K  + E+ E     M+E   
Sbjct: 298 IDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKN- 356

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              D      +I AY  +G ++   +  +    +G+K +    N L   Y + G  +K  
Sbjct: 357 LFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAA 416

Query: 192 SVMDFMQKRFFFP-----------------------------------TVVTYNIVIETF 216
            V+  M+     P                                   TVVTYN +++  
Sbjct: 417 EVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNL 476

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
              GH+E     +  M  RG+ PN +TYC+L+ A+ K G   +   I +   +       
Sbjct: 477 FHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSI 536

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             +N +I  + +   + +  E+FL MKE    PD IT+ T+I  Y  +G    A  L++ 
Sbjct: 537 TLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKD- 595

Query: 337 MIAMKENSG 345
              M E  G
Sbjct: 596 ---MSERDG 601



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 156/340 (45%), Gaps = 4/340 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  Q EQA  L   M+   L     VY  L+ AY  +G +D+A    + M  V
Sbjct: 331 LLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKV 390

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              K +    + LI    K    +   ++L  M    ++  +  YNT++DG+ K + F +
Sbjct: 391 G-LKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIK 449

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  M  + G +  + T N+++    + G++E     +N  +  GV  +  T   L 
Sbjct: 450 AFKLCDEM-HNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLL 508

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            ++ + G +D+   +      + F  ++  YN +I  F K   + + +E F KMK  G  
Sbjct: 509 DAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFP 568

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ ITY +L+  Y K G +++   +    E   +   T  +N +I+   ++ +++K+  L
Sbjct: 569 PDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGL 628

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              MK R   P+ +T+ ++I  +   GM + A N   KMI
Sbjct: 629 LAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMI 668



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 151/338 (44%), Gaps = 10/338 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  QA  +F  M   G  P    Y  L+  Y + G L EA   + DM       
Sbjct: 545 GFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALK-LKDMSERDGIS 603

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
                Y+ LI    +      +  +LAEM    +  + VTY ++I G+      ++  ++
Sbjct: 604 SSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNA 663

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTKSY 181
           +  M++ G   P+I   + ++S+    G I++     ++  ++  + A   ++  L KS 
Sbjct: 664 YFKMIDKG-IAPNIIIGSKIVSSLYRHGKIDEANLILHQIADIDPIAAHAHSVE-LPKSD 721

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            R    +  + V  F +K    P    + YNI I    K+ +I+ +      +  +G  P
Sbjct: 722 LRH--LETQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCP 779

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           ++ TYCSL+ A S  G + +   +   + N+ ++ +   +N +I+   ++G++++   LF
Sbjct: 780 DNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLF 839

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +  +   P  +T+ T+I  Y   G T  A  L++KM
Sbjct: 840 NKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKM 877



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 108/229 (47%), Gaps = 2/229 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+  G+ P++ + + +VS+  + G +DEA   ++ +  +       ++  +         
Sbjct: 667 MIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIADIDPIAAHAHSVELPKSDLRHLE 726

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
              +++    +   + I  + + YN  I G  K+K  +++    S ++  G C PD +T 
Sbjct: 727 TQKIVDSFGKKAMSIPIS-NNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFC-PDNYTY 784

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            S+I A    G + +     ++    G+  +I   N L     ++G  D+ R + + + +
Sbjct: 785 CSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLAR 844

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   PTVVTYN +I+ + K G   +  E   KM+  G+ P+SITY +L+
Sbjct: 845 KGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLI 893



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 152/339 (44%), Gaps = 16/339 (4%)

Query: 7   CKQPEQASLLFEVMLS--DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM------KSV 58
           CK    AS +++ ++S       S  V+  ++  + + G+   A    ++M       S+
Sbjct: 162 CKNNYIASAVWDELVSVYREFSFSPTVFDMILKVFAEKGMTKFALCVFDNMGKCGRVPSL 221

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C       S L+++   F    + E+++A    LGI     +Y  +++ Y K  + +E
Sbjct: 222 RSCNS---LLSNLVQNGEAFKALLVYEQMIA----LGILPDIFSYTIMVNAYCKEGRVDE 274

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
              +F   +E   C P++ T NS+I  Y + G++   +K     +  G+  + +T  +L 
Sbjct: 275 -AFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLI 333

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           K Y + G  ++   ++  M ++  F     Y ++I  +  AG ++        M   G+K
Sbjct: 334 KGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLK 393

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            N++   SL++ Y K G + K   +L  +++ ++  D+  +N ++  + +  D  K  +L
Sbjct: 394 MNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKL 453

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              M  +      +T+ T+++    +G  E A ++ N M
Sbjct: 454 CDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLM 492



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 148/324 (45%), Gaps = 8/324 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  + + ML  GLK +  +  +L++ Y + G +++A   +  MK   + KPD Y Y+ 
Sbjct: 378 DDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKD-WNLKPDSYGYNT 436

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K   F    K+  EM   G+  + VTYNT++         E     ++ M    
Sbjct: 437 LLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLM-HKR 495

Query: 131 GCHPDIFTLNSMISAYGNSGNIEK-MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G  P+  T  +++ A+   G  ++ M  W +  +  G    I   N +   + +     +
Sbjct: 496 GVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALS-KGFTKSITLYNTMICGFCKMEKLVQ 554

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-IEKMEEYFKKMKHR-GMKPNSITYCSL 247
            + +   M++  F P  +TY  +I+ + K G+ +E ++   K M  R G+  ++  Y SL
Sbjct: 555 AQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALK--LKDMSERDGISSSTEMYNSL 612

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++   ++  + K++ +L +++N ++  +   +  +I+ +   G ++K    +  M ++  
Sbjct: 613 ITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGI 672

Query: 308 VPDNITFATMIQAYNALGMTEAAQ 331
            P+ I  + ++ +    G  + A 
Sbjct: 673 APNIIIGSKIVSSLYRHGKIDEAN 696



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/277 (18%), Positives = 115/277 (41%), Gaps = 17/277 (6%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +PDV +Y  ++   ++   +  +   L E+  L   C         + Y  +  ++E+ S
Sbjct: 129 RPDVSSYCKIVHILSRARMYKEVRVYLNELVVL---CK--------NNYIASAVWDELVS 177

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +     S    P +F +  ++  +   G  +     ++     G    +++ N L  + 
Sbjct: 178 VYREFSFS----PTVFDM--ILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNL 231

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G   K   V + M      P + +Y I++  + K G +++   + K+M+    +PN 
Sbjct: 232 VQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNV 291

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY SL+  Y   G +     +L  +    +  ++  +  +I  Y + G +E+  +L   
Sbjct: 292 VTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGC 351

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           M E++   D   +  +I AY   G  + A  + + M+
Sbjct: 352 MMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAML 388


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 172/357 (48%), Gaps = 16/357 (4%)

Query: 1   MVMLGKCKQPE-QASLLFEVMLSDGL----KPSVDVYTALVSAYGQSGLLDEAFSTINDM 55
           +++ G C +   Q +L    M++DG      P V  YT +++ + + G   +A+ST ++M
Sbjct: 163 ILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEM 222

Query: 56  --KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113
             + +S   PDV TYS +I +  K    D   ++L  M   G+  +  TY +I+ GY  +
Sbjct: 223 LDRRIS---PDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSS 279

Query: 114 KKFEE----MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
            + +E    ++   S  VE  G  PDI T  +++  Y   G +  M    +     G+  
Sbjct: 280 GQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHP 339

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           D    NIL  +Y + G  D+   V   M+++   P  VTY  VI    K+G +E    YF
Sbjct: 340 DHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYF 399

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M   G+ P +I Y SL+          + + ++ ++ +  + L+T FFN II ++ + 
Sbjct: 400 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 459

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA--MKENS 344
           G V +  +LF  M      PD IT++T+I  Y   G  + A  L + M++  +K N+
Sbjct: 460 GRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNT 516



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 139/310 (44%), Gaps = 9/310 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDG-----LKPSVDVYTALVSAYGQSGLLDEAFSTIND 54
           +M G C   QP++A    + + SDG     L+P +  Y  L+  Y   G L      + D
Sbjct: 272 IMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGAL-VGMHALLD 330

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           +   +   PD Y Y+ILI +  K  + D    + ++M   G+   AVTY  +I    K+ 
Sbjct: 331 LMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSG 390

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           + E+    F  M++ G   P     NS+I         E+ E+   E    G+  +    
Sbjct: 391 RVEDAMLYFEQMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFF 449

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N +  S+ + G   +   + D M +    P ++TY+ +I+ +  AG +++  +    M  
Sbjct: 450 NSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVS 509

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+KPN++TY +L++ Y K   +     + +++E+S V  D   +N I+    Q      
Sbjct: 510 VGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAA 569

Query: 295 MGELFLTMKE 304
             EL++ + E
Sbjct: 570 AKELYVRITE 579



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 135/303 (44%), Gaps = 2/303 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L  C + E+A  L   ML  G+  +   + +++ ++ + G + E+    + M  +   KP
Sbjct: 421 LCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKP 479

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+ TYS LI       + D   K+L+ M  +G++ + VTY T+I+GY K  +  +    F
Sbjct: 480 DIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLF 539

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ES G  PDI T N ++     +      ++ Y      G + ++ T NI+     +
Sbjct: 540 KEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK 598

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
             + D    +   +          T+NI+I+   K G   + ++ F      G+ PN  T
Sbjct: 599 NKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWT 658

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +       GL+ ++D +   +E++   +D+   N I+    Q G++ + G     + 
Sbjct: 659 YRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMID 718

Query: 304 ERH 306
           E+H
Sbjct: 719 EKH 721



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 149/366 (40%), Gaps = 46/366 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L ++M+ +G+ P   VY  L+ AY + G +DEA    + M+      PD  TY  +I   
Sbjct: 328 LLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQ-QGLNPDAVTYGAVIGIL 386

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R +       +M   G+    + YN++I G     K+E  E     M++ G C   
Sbjct: 387 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 446

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           IF  NS+I ++   G + + EK ++    +GVK DI T + L   Y  AG  D+   ++ 
Sbjct: 447 IF-FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLS 505

Query: 196 FM-----------------------------------QKRFFFPTVVTYNIVIETFGKAG 220
            M                                   +     P ++TYNI+++   +  
Sbjct: 506 GMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTR 565

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTP 277
                +E + ++   G +    TY  ++    K  L    D  LR  +N    D+ L+  
Sbjct: 566 RTAAAKELYVRITESGTQIELSTYNIILHGLCKNKL---TDDALRMFQNLCLMDLKLEAR 622

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            FN +I A  + G   +  +LF+       VP+  T+  M +     G+ E    L+   
Sbjct: 623 TFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLE---ELDQLF 679

Query: 338 IAMKEN 343
           ++M++N
Sbjct: 680 LSMEDN 685



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 148/337 (43%), Gaps = 11/337 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS----VS 59
           L K +  ++A  +   M+ +G+ P+   YT+++  Y  SG   EA   +  ++S      
Sbjct: 241 LCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPD 300

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +PD+ TY  L++          +  +L  M   GI      YN +I  Y K  K +E 
Sbjct: 301 GLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEA 360

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              FS M + G  +PD  T  ++I     SG +E    ++ +    G+       N L  
Sbjct: 361 MLVFSKMRQQG-LNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 419

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                  +++   ++  M  R      + +N +I++  K G + + E+ F  M   G+KP
Sbjct: 420 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 479

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE-- 297
           + ITY +L+  Y  AG + +   +L  + +  +  +T  +  +I+ Y +   + +MG+  
Sbjct: 480 DIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCK---ISRMGDAL 536

Query: 298 -LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            LF  M+     PD IT+  ++Q       T AA+ L
Sbjct: 537 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 573



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 151/374 (40%), Gaps = 48/374 (12%)

Query: 11  EQASLLFEVMLSDGLKPSV-DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK--PDVYT 67
           E A  +F+ +L  G   S+  +  AL      S     A S  N M      K  P V+T
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARHSPA--AAVSRYNRMARAGAGKVTPTVHT 89

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE--------- 118
           Y+ILI  C +  R DL    L  +   G    A+T+  ++ G    K+  +         
Sbjct: 90  YAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 119 -----MESSFSAMV------------------------ESGGCHPDIFTLNSMISAYGNS 149
                M   FS  +                          GG  PD+ +  ++I+ +   
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKE 209

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G+  K    Y+E     +  D+ T + +  +  +    DK   V+  M K    P   TY
Sbjct: 210 GDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTY 269

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI-----TYCSLVSAYSKAGLIMKVDSIL 264
             ++  +  +G  ++   + KK++  G++P+ +     TYC+L+  Y+  G ++ + ++L
Sbjct: 270 TSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALL 329

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             +  + +  D   +N +I AY + G V++   +F  M+++   PD +T+  +I      
Sbjct: 330 DLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKS 389

Query: 325 GMTEAAQNLENKMI 338
           G  E A     +MI
Sbjct: 390 GRVEDAMLYFEQMI 403


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 164/334 (49%), Gaps = 2/334 (0%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K K  + A  LF+ M + G++P+V  Y++L+S     G   +A   ++DM       P
Sbjct: 880  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 938

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            DV+T+S LI +  K  +    EK+  EM    I+ S VTY+++I+G+    + +E +  F
Sbjct: 939  DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 998

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              MV S  C PD+ T N++I  +     +E+  + + E +  G+  +  T NIL +   +
Sbjct: 999  EFMV-SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 1057

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            AG  D  + +   M      P ++TYN +++   K G +EK    F+ ++   M+P   T
Sbjct: 1058 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 1117

Query: 244  YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
            Y  ++    KAG +     +   +    V  D   +N +IS + + G  E+   LF  MK
Sbjct: 1118 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 1177

Query: 304  ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            E   +P++  + T+I+A    G  EA+  L  +M
Sbjct: 1178 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 1211



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 153/325 (47%), Gaps = 2/325 (0%)

Query: 9    QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
            +  +A  L + M++ G +P +  Y  +V+   + G  D AF+ +N M+     +P V  Y
Sbjct: 815  KASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ-GKLEPGVLIY 873

Query: 69   SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
            + +I    K+   D    +  EM   GI  + VTY+++I       ++ +     S M+E
Sbjct: 874  NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 933

Query: 129  SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                +PD+FT +++I A+   G + + EK Y+E     +   I T + L   +      D
Sbjct: 934  RK-INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 992

Query: 189  KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
            + + + +FM  +  FP VVTYN +I+ F K   +E+  E F++M  RG+  N++TY  L+
Sbjct: 993  EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 1052

Query: 249  SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                +AG       I +++ +  V  +   +N ++    + G +EK   +F  ++     
Sbjct: 1053 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 1112

Query: 309  PDNITFATMIQAYNALGMTEAAQNL 333
            P   T+  MI+     G  E   +L
Sbjct: 1113 PTIYTYNIMIEGMCKAGKVEDGWDL 1137



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 147/290 (50%), Gaps = 10/290 (3%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A+ L   M+   + P+V  Y+AL+ A+ ++G + EA     +M  +S   PD+ TYS LI
Sbjct: 347 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS-IDPDIVTYSSLI 405

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                  R D   ++   M   G     V+YNT+I+G+ KAK+ E+    F  M + G  
Sbjct: 406 NGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRG-L 464

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             +  T N++I  +  +G+++K ++++++ +  G+  DI T NIL       G  +K   
Sbjct: 465 VSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALV 524

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           + + MQKR     +VTY  VI    K G +E+    F  +  +G+KP+ +TY +++S   
Sbjct: 525 IFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLC 584

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
             GL+ +V+++  +++   ++ +    +C +S     GD+    EL   M
Sbjct: 585 TKGLLHEVEALYTKMKQEGLMKN----DCTLS----DGDITLSAELIKKM 626



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 157/335 (46%), Gaps = 4/335 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C++     A  L + M+  G KP +  Y A++ +  ++  +++AF    +++     +
Sbjct: 267 GFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER-KGIR 325

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V TY+ L+       R+    ++L++M    I  + +TY+ ++D + K  K  E +  
Sbjct: 326 PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKEL 385

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV      PDI T +S+I+       I++  + ++     G  AD+ + N L   + 
Sbjct: 386 FEEMVRMS-IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC 444

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A   +    +   M +R      VTYN +I+ F +AG ++K +E+F +M   G+ P+  
Sbjct: 445 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 504

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+      G + K   I   ++  ++ LD   +  +I    + G VE+   LF ++
Sbjct: 505 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 564

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   PD +T+ TM+      G+    + L  KM
Sbjct: 565 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 599



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 153/327 (46%), Gaps = 2/327 (0%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C Q   A  +   ML  G +P      +LV+ + +   + +A S ++ M  +   KPD+ 
Sbjct: 236 CFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG-YKPDIV 294

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y+ +I S  K  R +       E+   GI  + VTY  +++G   + ++ +     S M
Sbjct: 295 AYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM 354

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           ++     P++ T ++++ A+  +G + + ++ + E   M +  DI T + L         
Sbjct: 355 IKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 413

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D+   + D M  +     VV+YN +I  F KA  +E   + F++M  RG+  N++TY +
Sbjct: 414 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 473

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+  + +AG + K      Q++   +  D   +N ++      G++EK   +F  M++R 
Sbjct: 474 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 533

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNL 333
              D +T+ T+I+     G  E A +L
Sbjct: 534 MDLDIVTYTTVIRGMCKTGKVEEAWSL 560



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 154/316 (48%), Gaps = 10/316 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDC 61
           L K K+   A   F+ +   G++P+V  YTALV+    S    +A   ++DM  K ++  
Sbjct: 303 LCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKIT-- 360

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            P+V TYS L+ +  K  +    +++  EM  + I+   VTY+++I+G     + +E   
Sbjct: 361 -PNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 419

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  MV S GC  D+ + N++I+ +  +  +E   K + E +  G+ ++  T N L + +
Sbjct: 420 MFDLMV-SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 478

Query: 182 GRAGMYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +AG  DK +    F Q  FF   P + TYNI++      G +EK    F+ M+ R M  
Sbjct: 479 FQAGDVDKAQEF--FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 536

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +TY +++    K G + +  S+   +    +  D   +  ++S     G + ++  L+
Sbjct: 537 DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALY 596

Query: 300 LTMKERHCVPDNITFA 315
             MK+   + ++ T +
Sbjct: 597 TKMKQEGLMKNDCTLS 612



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 147/332 (44%), Gaps = 37/332 (11%)

Query: 8    KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
            K+  +A  L + M   G +P+   +  L+          EA + I+ M +   C+PD+ T
Sbjct: 779  KRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVA-KGCQPDLVT 837

Query: 68   YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
            Y +++    K    DL   +L +M    +E   + YNTIIDG  K K  ++  + F  M 
Sbjct: 838  YGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM- 896

Query: 128  ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            E+ G  P++ T +S+IS   N G      +W                             
Sbjct: 897  ETKGIRPNVVTYSSLISCLCNYG------RWS---------------------------- 922

Query: 188  DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            D  R + D ++++   P V T++ +I+ F K G + + E+ + +M  R + P+ +TY SL
Sbjct: 923  DASRLLSDMIERKIN-PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 981

Query: 248  VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
            ++ +     + +   +   + +     D   +N +I  + +   VE+  E+F  M +R  
Sbjct: 982  INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 1041

Query: 308  VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            V + +T+  +IQ     G  + AQ +  +M++
Sbjct: 1042 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 1073



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 111/267 (41%), Gaps = 37/267 (13%)

Query: 12   QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            +A  L++ M+   + PS+  Y++L++ +     LDEA      M S   C PDV TY+ L
Sbjct: 958  EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS-KHCFPDVVTYNTL 1016

Query: 72   IKSCTKFHRF-----------------------------------DLIEKILAEMSYLGI 96
            IK   K+ R                                    D+ ++I  EM   G+
Sbjct: 1017 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 1076

Query: 97   ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
              + +TYNT++DG  K  K E+    F  +  S    P I+T N MI     +G +E   
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK-MEPTIYTYNIMIEGMCKAGKVEDGW 1135

Query: 157  KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
              +   +L GVK D+   N +   + R G  ++  ++   M++    P    YN +I   
Sbjct: 1136 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 1195

Query: 217  GKAGHIEKMEEYFKKMKHRGMKPNSIT 243
             + G  E   E  K+M+  G   ++ T
Sbjct: 1196 LRDGDREASAELIKEMRSCGFAGDAST 1222



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/305 (19%), Positives = 132/305 (43%), Gaps = 8/305 (2%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           L++A    +DM   S   P +  ++ L+ +  K  ++D++  +  +M  LGI     T+N
Sbjct: 169 LNDAIDLFSDMVK-SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I+ +    +     S    M++ G   PD  T+ S+++ +     +       ++   
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLG-YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 286

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
           +G K DI   N +  S  +    +        ++++   P VVTY  ++     +     
Sbjct: 287 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 346

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
                  M  + + PN ITY +L+ A+ K G +++   +  ++    +  D   ++ +I+
Sbjct: 347 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLIN 406

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
                  +++  ++F  M  + C+ D +++ T+I  +        A+ +E+ M   +E S
Sbjct: 407 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC------KAKRVEDGMKLFREMS 460

Query: 345 GKKLI 349
            + L+
Sbjct: 461 QRGLV 465



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 147/353 (41%), Gaps = 37/353 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A ++FE M    +   +  YT ++    ++G ++EA+S    + S+   KPD+ TY+ 
Sbjct: 520 EKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL-SLKGLKPDIVTYTT 578

Query: 71  LIKS-CTK--FHRFDLIEKILAEMSYLGIECSAVTYNTIIDG--YGKAKKFEEMES---- 121
           ++   CTK   H  + +   + +   +  +C      T+ DG     A+  ++M S    
Sbjct: 579 MMSGLCTKGLLHEVEALYTKMKQEGLMKNDC------TLSDGDITLSAELIKKMLSCGYA 632

Query: 122 -SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW----YNEFNLMGVKA------- 169
            S    ++SG C   +    S++ A+    + +  EK      +E  L    A       
Sbjct: 633 PSLLKDIKSGVCKKAL----SLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVK 688

Query: 170 -----DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
                 I   + L  +  +   +D + S+ + MQ         TY+I+I  F +   +  
Sbjct: 689 SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPL 748

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
                 KM   G +PN +T  SL++ Y  +  I +  +++ Q+  +    +T  FN +I 
Sbjct: 749 ALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIH 808

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                    +   L   M  + C PD +T+  ++      G T+ A NL NKM
Sbjct: 809 GLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 861


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 155/325 (47%), Gaps = 8/325 (2%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--K 56
           +++ G CK    + A  LF  M   G K  +  Y  L+  +  +G  D+    + DM  +
Sbjct: 268 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            +S   P+V T+S+LI S  K  +    +++L EM   GI  + +TYN++IDG+ K  + 
Sbjct: 328 KIS---PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRL 384

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           EE       M+ S GC PDI T N +I+ Y  +  I+   + + E +L GV A+  T N 
Sbjct: 385 EEAIQMVDLMI-SKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNT 443

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L + + ++G  +  + +   M  R   P +V+Y I+++     G +EK  E F K++   
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSK 503

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           M+ +   Y  ++     A  +     +   +    V LD   +N +IS   +   + K  
Sbjct: 504 MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKAD 563

Query: 297 ELFLTMKERHCVPDNITFATMIQAY 321
            LF  M E    PD +T+  +I+A+
Sbjct: 564 ILFRKMTEEGHAPDELTYNILIRAH 588



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 155/332 (46%), Gaps = 3/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C+  E   L+ + M+  G KP++     LV+    +G + +A   I+ M   +  +P+ 
Sbjct: 171 ECRVSEALELV-DRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVE-TGFQPNE 228

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY  ++    K  +  L  ++L +M    I+  AV Y+ IIDG  K    +   + F+ 
Sbjct: 229 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 288

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M E  G   DI T N++I  + N+G  +   K   +     +  ++ T ++L  S+ + G
Sbjct: 289 M-EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEG 347

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              +   ++  M +R   P  +TYN +I+ F K   +E+  +    M  +G  P+ +T+ 
Sbjct: 348 KLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFN 407

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L++ Y KA  I     + R++    VI +T  +N ++  + Q+G +E   +LF  M  R
Sbjct: 408 ILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR 467

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              PD +++  ++      G  E A  +  K+
Sbjct: 468 RVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 146/335 (43%), Gaps = 10/335 (2%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + + A  LF  M+     P+V  +  L SA  ++   +   +    M+S       +YT 
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMES-KGIAHSIYTL 126

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           SI+I    +  +       + ++  LG E   V +NT+++G     +  E       MVE
Sbjct: 127 SIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVE 186

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT----LNILTKSYGRA 184
            G   P + TLN++++    +G +       +     G + +  T    LN++ KS   A
Sbjct: 187 MGH-KPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTA 245

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              + +R     M++R      V Y+I+I+   K G ++     F +M+ +G K + ITY
Sbjct: 246 LAMELLRK----MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITY 301

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+  +  AG       +LR +    +  +   F+ +I ++ + G + +  +L   M +
Sbjct: 302 NTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQ 361

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           R   P+ IT+ ++I  +      E A  + + MI+
Sbjct: 362 RGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMIS 396



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 101/243 (41%), Gaps = 1/243 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           + + +N +     K K++E +  +    +ES G    I+TL+ MI+ +     +      
Sbjct: 87  TVIDFNRLFSAIAKTKQYE-LVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             +   +G + D    N L           +   ++D M +    PT++T N ++     
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
            G +        +M   G +PN +TY  +++   K+G       +LR++E  ++ LD   
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++ II    + G ++    LF  M+ +    D IT+ T+I  +   G  +    L   MI
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 339 AMK 341
             K
Sbjct: 326 KRK 328



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 2/167 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  LF+ M+S  ++P +  Y  L+     +G L++A      ++  S  + D+  Y I
Sbjct: 455 EVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK-SKMELDIGIYMI 513

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I       + D    +   +   G++  A  YN +I    +     + +  F  M E G
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
              PD  T N +I A+    +     +   E    G  AD+ T+ ++
Sbjct: 574 H-APDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMV 619


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 160/349 (45%), Gaps = 37/349 (10%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+V++Y+ ++ A  +  L+ EA+   ++M +V     DV TYS LI       +     
Sbjct: 444 KPNVEMYSTIIDALCKYQLVSEAYGLFSEM-TVKGISADVVTYSTLIYGFCIVGKLKEAI 502

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +L EM    I     TY  ++D  GK  K +E +S  + M+++    PD+FT N++++ 
Sbjct: 503 GLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKAC-VKPDVFTYNTLMNG 561

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           Y     ++K +  +N  +LMGV  D+ T  IL   + ++ M D+  ++   M ++   P 
Sbjct: 562 YLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPD 621

Query: 206 -----------------------------------VVTYNIVIETFGKAGHIEKMEEYFK 230
                                              V+TYN +I+   K GH++K    F 
Sbjct: 622 TVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFN 681

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           KMK +G++PN+ T+  L+    K G +     + + +      LD   +N +I  + + G
Sbjct: 682 KMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQG 741

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +E+   +   M+E  C+P+ +TF  +I A       + A+ L  +MIA
Sbjct: 742 LLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIA 790



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 144/303 (47%), Gaps = 5/303 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           ++GK K  E   LL E++L   + P V  YT LV A G+ G + EA S +  M      K
Sbjct: 494 IVGKLK--EAIGLLNEMVLKT-INPDVRTYTILVDALGKEGKVKEAKSVLAVMLKAC-VK 549

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+TY+ L+      +     + +   MS +G+     TY  +I+G+ K+K  +E  + 
Sbjct: 550 PDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNL 609

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +     PD  T +S++     SG I  +    +E    G  AD+ T N L     
Sbjct: 610 FKEMHQKNMV-PDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLC 668

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  DK  ++ + M+ +   P   T+ I+++   K G ++  +E F+ +  +G   +  
Sbjct: 669 KNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVY 728

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y  ++  + K GL+ +  ++L ++E +  I +   F+ II+A  +  + +K  +L   M
Sbjct: 729 IYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQM 788

Query: 303 KER 305
             R
Sbjct: 789 IAR 791



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 155/336 (46%), Gaps = 6/336 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           ++GK K+   A  L  VM+   + P+V  Y  LV A  + G + EA S +  M      K
Sbjct: 180 IVGKLKE---ALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKAC-VK 235

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            +V TYS L+      +     + +   MS +G+     +YN +I+G+ K K+ ++  + 
Sbjct: 236 SNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNL 295

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M+ S    P I   N ++ ++    +        +   L G++ D+ TLNIL   + 
Sbjct: 296 FKEMILSR--FPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFC 353

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G      SV+  + KR + P+ VT N +I+     G ++K   +  K+  +G + N +
Sbjct: 354 HMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQV 413

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L++   K G       +LR+++      +   ++ II A  +   V +   LF  M
Sbjct: 414 SYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEM 473

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +    D +T++T+I  +  +G  + A  L N+M+
Sbjct: 474 TVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMV 509



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 110/227 (48%), Gaps = 2/227 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F  M   G+ P V  YT L++ + +S ++DEA +   +M    +  PD  TYS 
Sbjct: 569 KKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQ-KNMVPDTVTYSS 627

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  R   +  ++ EM   G     +TYN++IDG  K    ++  + F+ M +  
Sbjct: 628 LVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKM-KDQ 686

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+ FT   ++      G ++  ++ + +    G   D+   N++   + + G+ ++ 
Sbjct: 687 GIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEA 746

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            +++  M++    P  VT++I+I    K    +K E+  ++M  RG+
Sbjct: 747 LTMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 153/371 (41%), Gaps = 40/371 (10%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+ +  +A  +  VML   +K +V  Y+ L+  Y     + +A    N M S+    PD
Sbjct: 214 CKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAM-SLMGVTPD 272

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V++Y+I+I    K  R D    +  EM  L      + +N I+D + K K +     S S
Sbjct: 273 VHSYNIMINGFCKIKRVDKALNLFKEM-ILSRFPPIIQFNKILDSFAKMKHYST-AVSLS 330

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +E  G  PD+FTLN +I+ + + G I        +    G      TLN L K     
Sbjct: 331 HRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLK 390

Query: 185 G-------MYDKM-------------------------RSVMDFMQK---RFFFPTVVTY 209
           G        +DK+                         R  +  ++K   R   P V  Y
Sbjct: 391 GQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMY 450

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           + +I+   K   + +    F +M  +G+  + +TY +L+  +   G + +   +L ++  
Sbjct: 451 STIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVL 510

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
             +  D   +  ++ A G+ G V++   +   M +    PD  T+ T++  Y  +   + 
Sbjct: 511 KTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKK 570

Query: 330 AQNLENKMIAM 340
           AQ++ N M  M
Sbjct: 571 AQHVFNAMSLM 581



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 160/367 (43%), Gaps = 38/367 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K+ ++A  LF+ M+     P +  +  ++ ++ +      A S  + ++ +   +PD+
Sbjct: 285 KIKRVDKALNLFKEMILSRFPPIIQ-FNKILDSFAKMKHYSTAVSLSHRLE-LKGIQPDL 342

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKK------- 115
           +T +ILI       +      +LA++   G   S VT NT+I G    G+ KK       
Sbjct: 343 FTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDK 402

Query: 116 -----FEEMESSFSAMVESGGCH--------------------PDIFTLNSMISAYGNSG 150
                F+  + S++ ++ +G C                     P++   +++I A     
Sbjct: 403 LLAQGFQLNQVSYATLI-NGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQ 461

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            + +    ++E  + G+ AD+ T + L   +   G   +   +++ M  +   P V TY 
Sbjct: 462 LVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYT 521

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           I+++  GK G +++ +     M    +KP+  TY +L++ Y     + K   +   +   
Sbjct: 522 ILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLM 581

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            V  D   +  +I+ + ++  V++   LF  M +++ VPD +T+++++      G     
Sbjct: 582 GVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYV 641

Query: 331 QNLENKM 337
            +L ++M
Sbjct: 642 WDLIDEM 648



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 152/367 (41%), Gaps = 44/367 (11%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--CKPDVY 66
           Q ++A    + +L+ G + +   Y  L++   + G   +  + I  ++ +     KP+V 
Sbjct: 78  QVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIG---DTRAAIKFLRKIDGRLAKPNVE 134

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y+ +I +  K+        + +EM+  GI  + VTY+T+I G+    K +E     + M
Sbjct: 135 MYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVM 194

Query: 127 VESGGCHPDIFTLNSMISAYGNSGN----------------------------------- 151
           V     +P++ T N ++ A    G                                    
Sbjct: 195 VLK-TINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYE 253

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM-DFMQKRFFFPTVVTYN 210
           ++K +  +N  +LMGV  D+ + NI+   + +    DK  ++  + +  R  FP ++ +N
Sbjct: 254 VKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSR--FPPIIQFN 311

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            ++++F K  H         +++ +G++P+  T   L++ +   G I    S+L ++   
Sbjct: 312 KILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKR 371

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
                T   N +I      G V+K       +  +    + +++AT+I     +G T  A
Sbjct: 372 GYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGA 431

Query: 331 QNLENKM 337
             L  K+
Sbjct: 432 IKLLRKI 438



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 121/284 (42%), Gaps = 20/284 (7%)

Query: 63  PDVYTYSILIKS-CTK--------FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113
           PD  T + LIK  C K        FH     +K+LA+    G + + V+Y T+I+G  + 
Sbjct: 61  PDTVTLNTLIKGLCLKGQVKEALHFH-----DKLLAQ----GFQLNQVSYATLINGVCRI 111

Query: 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
                    F   ++     P++   N++I A      + +    ++E  + G+ A++ T
Sbjct: 112 GD-TRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVT 170

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            + L   +   G   +   +++ M  +   P V TYNI+++   K G +++ +     M 
Sbjct: 171 YSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVML 230

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
              +K N ITY +L+  Y     + K   +   +    V  D   +N +I+ + +   V+
Sbjct: 231 KACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVD 290

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           K   LF  M      P  I F  ++ ++  +     A +L +++
Sbjct: 291 KALNLFKEMILSR-FPPIIQFNKILDSFAKMKHYSTAVSLSHRL 333



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 8/214 (3%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD  TLN++I      G +++   ++++    G + +  +   L     R G     
Sbjct: 58  GYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIG---DT 114

Query: 191 RSVMDFMQK---RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           R+ + F++K   R   P V  YN +I+   K   + +    F +M  +G+  N +TY +L
Sbjct: 115 RAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTL 174

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  +   G + +   +L  +    +  +   +N ++ A  + G V++   +   M  + C
Sbjct: 175 IYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVM-LKAC 233

Query: 308 VPDN-ITFATMIQAYNALGMTEAAQNLENKMIAM 340
           V  N IT++T++  Y  +   + AQ++ N M  M
Sbjct: 234 VKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 267



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%)

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           SV+  + KR + P  VT N +I+     G +++   +  K+  +G + N ++Y +L++  
Sbjct: 49  SVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGV 108

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + G        LR+++      +   +N II A  +   V +   LF  M  +    + 
Sbjct: 109 CRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANV 168

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           +T++T+I  +  +G  + A  L N M+
Sbjct: 169 VTYSTLIYGFCIVGKLKEALGLLNVMV 195



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 104/257 (40%), Gaps = 11/257 (4%)

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN-----S 141
           +L ++   G     VT NT+I G     + +E       ++  G      F LN     +
Sbjct: 50  VLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQG------FQLNQVSYAT 103

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I+     G+     K+  + +    K +++  N +  +  +  +  +   +   M  + 
Sbjct: 104 LINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKG 163

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
               VVTY+ +I  F   G +++       M  + + PN  TY  LV A  K G + +  
Sbjct: 164 ISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAK 223

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           S+L  +  + V  +   ++ ++  Y    +V+K   +F  M      PD  ++  MI  +
Sbjct: 224 SVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGF 283

Query: 322 NALGMTEAAQNLENKMI 338
             +   + A NL  +MI
Sbjct: 284 CKIKRVDKALNLFKEMI 300


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 156/320 (48%), Gaps = 2/320 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G+KP+V  Y  ++  Y   G ++ A   ++ MK+    +PD YTY  LI    K  + + 
Sbjct: 266 GVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKN-RGVEPDSYTYGSLISGMCKGGKLEE 324

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              IL +M  +G+  +AVTYNT+IDGY       +       MV      P + T N +I
Sbjct: 325 ASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRA-ILPTVSTYNLLI 383

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A    G +++ +    +    G+  D  T NIL   Y R G   K  ++ D M  +   
Sbjct: 384 HALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQ 443

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT+VTY  +I    K   ++  ++ F+K+   G  P+ I + +L+  +   G + +  ++
Sbjct: 444 PTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFAL 503

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L++++  +++ D   +N ++    + G VE+  EL   MK R   PD+I++ T+I  Y+ 
Sbjct: 504 LKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSK 563

Query: 324 LGMTEAAQNLENKMIAMKEN 343
            G    A  + ++M+++  N
Sbjct: 564 RGDINDAFTIRDEMLSIGFN 583



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 157/357 (43%), Gaps = 41/357 (11%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C +   E A ++ ++M + G++P    Y +L+S   + G L+EA   +  MK + 
Sbjct: 277 VIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIG 336

Query: 60  DCK----------------------------------PDVYTYSILIKSCTKFHRFDLIE 85
                                                P V TY++LI +     + D  +
Sbjct: 337 LLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEAD 396

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            ++ +M   GI   ++TYN +I+GY +    ++  +    M+ S G  P + T  S+I  
Sbjct: 397 GMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMI-SKGIQPTLVTYTSLIYV 455

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
                 ++  +  + +    G   D+   N L   +   G  D+  +++  M KR   P 
Sbjct: 456 LSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPD 515

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
            VTYN +++   + G +E+  E  K+MK RG++P+ I+Y +L+S YSK G I    +I  
Sbjct: 516 EVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRD 575

Query: 266 QVENSDVILDTPFFNCIISAY--GQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           ++ +         +N +I      Q GD+ +  EL   M  +   PD+ T+ ++I+ 
Sbjct: 576 EMLSIGFNPTLLTYNALIQGLCKNQQGDLAE--ELLKEMVSKGITPDDSTYFSLIEG 630



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 156/326 (47%), Gaps = 5/326 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G K S+ V+  L+ A  +    D+AF   + MK      P + T++ ++    K ++ + 
Sbjct: 162 GTKSSI-VFDMLIRACCELKRGDDAFECFDMMKE-KGVVPKIETFNAMLSLFLKLNQTET 219

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           +  + AEM  L I+ +  T+N +I+   K  K ++ +    +M E+ G  P++ T N++I
Sbjct: 220 VWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSM-ENLGVKPNVVTYNTVI 278

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             Y + G +E      +     GV+ D  T   L     + G  ++   +++ M++    
Sbjct: 279 HGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLL 338

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT VTYN +I+ +   G + K   Y  +M  R + P   TY  L+ A    G + + D +
Sbjct: 339 PTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGM 398

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           ++ + +S ++ D+  +N +I+ Y + G+ +K   L   M  +   P  +T+ ++I   + 
Sbjct: 399 IKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSK 458

Query: 324 LGMTEAAQNLENKMIAMKENSGKKLI 349
               +AA +L  K+I  +E +   LI
Sbjct: 459 RNRMKAADDLFEKII--REGASPDLI 482



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 119/272 (43%), Gaps = 2/272 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+   + P+V  Y  L+ A    G +DEA   I DM   S   PD  TY+ILI    +  
Sbjct: 367 MVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGD-SGIVPDSITYNILINGYCRCG 425

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
                  +  EM   GI+ + VTY ++I    K  + +  +  F  ++  G   PD+   
Sbjct: 426 NAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGAS-PDLIMF 484

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N++I  +  +GN+++      E +   +  D  T N L +   R G  ++ R ++  M++
Sbjct: 485 NALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKR 544

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R   P  ++YN +I  + K G I        +M   G  P  +TY +L+    K      
Sbjct: 545 RGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDL 604

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
            + +L+++ +  +  D   +  +I   G+  D
Sbjct: 605 AEELLKEMVSKGITPDDSTYFSLIEGIGKVDD 636



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 10/247 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  + + M   G+ P    Y  L++ Y + G   +AF+  ++M S    +P + TY+ 
Sbjct: 393 DEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMIS-KGIQPTLVTYTS 451

Query: 71  LIKSCTKFHRF----DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           LI   +K +R     DL EKI+ E    G     + +N +IDG+      +   +    M
Sbjct: 452 LIYVLSKRNRMKAADDLFEKIIRE----GASPDLIMFNALIDGHCANGNLDRAFALLKEM 507

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            +     PD  T N+++      G +E+  +   E    G++ D  + N L   Y + G 
Sbjct: 508 -DKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGD 566

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            +   ++ D M    F PT++TYN +I+   K    +  EE  K+M  +G+ P+  TY S
Sbjct: 567 INDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFS 626

Query: 247 LVSAYSK 253
           L+    K
Sbjct: 627 LIEGIGK 633



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 2/181 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L K  + + A  LFE ++ +G  P + ++ AL+  +  +G LD AF+ + +M    +  
Sbjct: 455 VLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDK-RNIV 513

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY+ L++   +  + +   ++L EM   GI    ++YNT+I GY K     +  + 
Sbjct: 514 PDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTI 573

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+ S G +P + T N++I     +   +  E+   E    G+  D  T   L +  G
Sbjct: 574 RDEML-SIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIG 632

Query: 183 R 183
           +
Sbjct: 633 K 633



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 3/123 (2%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G+C++   E+A  L + M   G++P    Y  L+S Y + G +++AF+  ++M S+ 
Sbjct: 522 LMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIG 581

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P + TY+ LI+   K  + DL E++L EM   GI     TY ++I+G GK     E 
Sbjct: 582 -FNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640

Query: 120 ESS 122
             S
Sbjct: 641 SDS 643


>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 810

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 151/301 (50%), Gaps = 4/301 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+ P +  +  ++SAY       +A S    MK  +  +PD  T++I+I   +K  
Sbjct: 239 MTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG-AKVRPDTTTFNIIIYCLSKLG 297

Query: 80  RFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           +      +   M     EC    VT+ +I+  Y    + E   + F AMV + G  P+I 
Sbjct: 298 QSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMV-AEGLKPNIV 356

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           + N+++ AY   G          +    G+  D+ +   L  SYGR+    K + V   M
Sbjct: 357 SYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMM 416

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +K    P VVTYN +I+ +G  G + +  E F++M+  G+KPN ++ C+L++A S++   
Sbjct: 417 RKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKK 476

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           + VD++L   ++  + L+T  +N  I +Y  A ++EK   L+ +M+++    D++TF  +
Sbjct: 477 VNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTIL 536

Query: 318 I 318
           I
Sbjct: 537 I 537



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 149/310 (48%), Gaps = 4/310 (1%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D+Y  ++  + +   +D+A     +M+  S CKPD  TY  LI +  +  ++     ++ 
Sbjct: 144 DIYNMMIRLHARHNWVDQARGLFFEMQKWS-CKPDAETYDALINAHGRAGQWRWAMNLMD 202

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M    I  S  TYN +I+  G +  + E       M ++G   PD+ T N ++SAY + 
Sbjct: 203 DMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNG-VGPDLVTHNIVLSAYKSG 261

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVV 207
               K   ++       V+ D  T NI+     + G   +   + + M+++     P VV
Sbjct: 262 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVV 321

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           T+  ++  +   G IE     F+ M   G+KPN ++Y +L+ AY+  G+     S+L  +
Sbjct: 322 TFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDI 381

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           + + +I D   + C++++YG++    K  E+FL M++    P+ +T+  +I AY + G  
Sbjct: 382 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFL 441

Query: 328 EAAQNLENKM 337
             A  +  +M
Sbjct: 442 AEAVEIFRQM 451



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 140/313 (44%), Gaps = 49/313 (15%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E    +FE M+++GLKP++  Y AL+ AY   G+   A S + D+K  +   PDV     
Sbjct: 337 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ-NGIIPDV----- 390

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
                                         V+Y  +++ YG++++  + +  F  M+   
Sbjct: 391 ------------------------------VSYTCLLNSYGRSRQPGKAKEVF-LMMRKE 419

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T N++I AYG++G + +  + + +    G+K ++ ++  L  +  R+     +
Sbjct: 420 RRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNV 479

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +V+   Q R        YN  I ++  A  +EK    ++ M+ + +K +S+T+  L+S 
Sbjct: 480 DTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISG 539

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +     +  S L+++E+  + L             + G V +   +F  MK   C PD
Sbjct: 540 SCRMSKYPEAISYLKEMEDLSIPLT------------KEGQVTEAESIFNQMKMAGCEPD 587

Query: 311 NITFATMIQAYNA 323
            I + +M+ AYNA
Sbjct: 588 VIAYTSMLHAYNA 600



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 143/382 (37%), Gaps = 95/382 (24%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+ +QP +A  +F +M  +  KP+V  Y AL+ AYG +G L EA      M+     KP+
Sbjct: 401 GRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQ-DGIKPN 459

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGI---------------------------- 96
           V +   L+ +C++  +   ++ +L+     GI                            
Sbjct: 460 VVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQ 519

Query: 97  -------ECSAVTYNTIIDGYGKAKKFEEM-----------------------ESSFSAM 126
                  +  +VT+  +I G  +  K+ E                        ES F+ M
Sbjct: 520 SMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEGQVTEAESIFNQM 579

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            +  GC PD+    SM+ AY  S    K  + + E    G++ D    + L +++ + G 
Sbjct: 580 -KMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQ 638

Query: 187 YDKMRSVMDFMQKR--------FF-------------------------FPT--VVTYNI 211
              +  +MD M+++        FF                          P+  +   N 
Sbjct: 639 PSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQ 698

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           ++  FGK+G +E M + F K+   G+  N  TY  L+      G   K   +L  +  + 
Sbjct: 699 MLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAG 758

Query: 272 VILDTPFFNCIISAYGQAGDVE 293
           +      +  IIS   ++  +E
Sbjct: 759 IQPSNQMYRDIISFGERSAGIE 780



 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 6/224 (2%)

Query: 2   VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           + L K  Q  +A  +F  M   G +P V  YT+++ AY  S    +A     +M++ +  
Sbjct: 561 IPLTKEGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEA-NGI 619

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +PD    S L+++   F++      +   M  +  +    T     + +      +E + 
Sbjct: 620 EPDSIACSALMRA---FNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKR 676

Query: 122 SFSAMVESGGCHP--DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +   +       P   I   N M+  +G SG +E M K + +    GV  +++T  IL +
Sbjct: 677 AIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLE 736

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
                G + K   V+++M      P+   Y  +I    ++  IE
Sbjct: 737 HLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIE 780


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 161/340 (47%), Gaps = 5/340 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +LGK  Q   A  +F       ++ +V VY A++  Y +SG  ++    + D+     
Sbjct: 229 LAVLGKANQEPLAVEVF-TRAEPSVENTVKVYNAMMGVYARSGKFNKV-QELFDLMRERG 286

Query: 61  CKPDVYTYSILIKSCTKFHRF--DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           C+PD+ +++ LI +  K      +L  ++L E+   G+    +TYNT+I    +A   EE
Sbjct: 287 CEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEE 346

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             + F  MV +  C PD++T N+MIS YG  G   K E+ +N+    G   D  + N   
Sbjct: 347 AVNVFDDMV-AHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFL 405

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            ++ R G  +K++ + + M K  F    +TYN +I  +GK G  +   + ++ MK  G  
Sbjct: 406 YAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRN 465

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ ITY  L+ +  K   I +   ++ ++ N+ V      ++ +I  Y +AG   +  E 
Sbjct: 466 PDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEET 525

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  M      PD + ++ M+  +      + A     +MI
Sbjct: 526 FDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMI 565



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 139/311 (44%), Gaps = 2/311 (0%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E+A  +F  M+ DG  P+VD    L+ A    G L+E +  + +++ +   K    +  +
Sbjct: 832  ERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIG-FKISKSSILL 890

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            ++ +  +      ++KI   M   G   S   Y  +     + K+  ++E+  S M E  
Sbjct: 891  MLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEM-EEA 949

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            G  PD+   NS++  Y    +  K  + Y      G++ D  T NIL   Y R     + 
Sbjct: 950  GFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEG 1009

Query: 191  RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              +MD M+     P + TY  ++ +FGK   +E+ EE F++++  G K +   Y  ++  
Sbjct: 1010 LVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKI 1069

Query: 251  YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            Y  +G   K   +   +++  V       + ++ +YG +G  ++  ++   +KE      
Sbjct: 1070 YRNSGSHSKAQRLFSMMKDEGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLS 1129

Query: 311  NITFATMIQAY 321
             + ++++I AY
Sbjct: 1130 TLPYSSVIDAY 1140



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 120/252 (47%), Gaps = 6/252 (2%)

Query: 3    MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-- 60
            +L + KQ      +   M   G KP + ++ +++  Y     +D+   T    + + +  
Sbjct: 929  LLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVA---IDDFRKTTQIYQRIKEDG 985

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             +PD  TY+ILI    + HR      ++ EM  +G+E    TY +++  +GK +  E+ E
Sbjct: 986  LEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAE 1045

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              F  + +S GC  D    + M+  Y NSG+  K ++ ++     GV+  I T+++L  S
Sbjct: 1046 ELFEEL-QSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHLLMVS 1104

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            YG +G   +   V+  +++     + + Y+ VI+ + + G      +  K++K  G++P+
Sbjct: 1105 YGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYVRNGDYNAGIQKLKQVKEEGLEPD 1164

Query: 241  SITYCSLVSAYS 252
               +   + A S
Sbjct: 1165 HRIWTCFIRAAS 1176



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 144/328 (43%), Gaps = 15/328 (4%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            +VML K +Q + A   +      G   S  ++ AL+    ++ L  EA    +DM+    
Sbjct: 681  VVMLCKAQQLDTALKEYSNSRELGFTGSFTMFEALIQCCLENELFTEASQVFSDMRFCGI 740

Query: 61   CKPDVYTYSILIKSC------TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
               +    S+++  C      T  H  DL E     ++ + +      Y  +I+ YG+ K
Sbjct: 741  KASECLYQSMMLLYCKMGFPETAHHLIDLTETDGTVLNNISV------YVDVIEAYGRLK 794

Query: 115  KFEEMESSFSAMVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
             +++ ES    M +S  C   +    N++I AY  SG  E+    +N     G    + +
Sbjct: 795  LWQKAESVAGNMRQS--CITVNRKVWNALIEAYAASGCYERARAVFNTMMKDGPSPTVDS 852

Query: 174  LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            +N L ++    G  +++  V+  +Q   F  +  +  ++++ F +AG+I ++++ +  MK
Sbjct: 853  INGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAGNIFEVKKIYHGMK 912

Query: 234  HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
              G  P+   Y  +     +   +  V+++L ++E +    D   +N ++  Y    D  
Sbjct: 913  AAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFR 972

Query: 294  KMGELFLTMKERHCVPDNITFATMIQAY 321
            K  +++  +KE    PD  T+  +I  Y
Sbjct: 973  KTTQIYQRIKEDGLEPDEDTYNILIVMY 1000



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 80/151 (52%), Gaps = 2/151 (1%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            +VM  +  +P++  +L + M + GL+P +D Y +LV+++G+  L+++A     +++S + 
Sbjct: 997  IVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQS-TG 1055

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            CK D   Y I++K           +++ + M   G+E +  T + ++  YG + + +E E
Sbjct: 1056 CKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHLLMVSYGSSGQPQEAE 1115

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
               S + E+   +      +S+I AY  +G+
Sbjct: 1116 KVLSNLKETDA-NLSTLPYSSVIDAYVRNGD 1145



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 65/331 (19%), Positives = 125/331 (37%), Gaps = 42/331 (12%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P++A   ++ M+ DG+ P   +Y  ++   G +  +++    + DM+ V    P   +Y
Sbjct: 553 EPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQAISY 612

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
            ++   C     +D   K+L           A++    ID         E   S  +   
Sbjct: 613 ILVKGDC-----YDEAAKMLRR---------AISDRYEID--------RENLLSILSSYS 650

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           S G H     L  ++  +    +    E       +M  KA  Q L+   K Y  +    
Sbjct: 651 SSGRHSVALDLLELLKEHTPRSSQMITEA----LVVMLCKA--QQLDTALKEYSNS---- 700

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
                + F      F  ++   +  E F +A  +      F  M+  G+K +   Y S++
Sbjct: 701 ---RELGFTGSFTMFEALIQCCLENELFTEASQV------FSDMRFCGIKASECLYQSMM 751

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDT-PFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
             Y K G       ++   E    +L+    +  +I AYG+    +K   +   M++   
Sbjct: 752 LLYCKMGFPETAHHLIDLTETDGTVLNNISVYVDVIEAYGRLKLWQKAESVAGNMRQSCI 811

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +   +  +I+AY A G  E A+ + N M+
Sbjct: 812 TVNRKVWNALIEAYAASGCYERARAVFNTMM 842


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 165/327 (50%), Gaps = 12/327 (3%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  M  +G  P+V  Y  L+ AY + G +DEAF  +  M S    +P++ +Y+++I    
Sbjct: 33  FGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSS-KGMQPNLISYNVIINGLC 91

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           +        +IL EM Y G     VTYNT+++GY K   F +     + MV +G   P +
Sbjct: 92  REGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNG-VSPSV 150

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            T  ++I++   + N+ +  +++++  + G++ + +T   L   + R G+ ++   +++ 
Sbjct: 151 VTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNE 210

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGH--IEKMEEYF---KKMKHRGMKPNSITYCSLVSAY 251
           M +  F P+VVTYN  I      GH  +E+MEE     ++M  +G+ P+ ++Y +++S +
Sbjct: 211 MTESGFSPSVVTYNAFIH-----GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGF 265

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + G + +   + +++    V  D   ++ +I    +   + +  +L   M +    PD 
Sbjct: 266 CRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 325

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
            T+ T+I AY   G    A +L ++MI
Sbjct: 326 FTYTTLINAYCVEGDLNKALHLHDEMI 352



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 133/280 (47%), Gaps = 1/280 (0%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S   P+VYTY+ILI+                EM   G   + VTYNT+ID Y K  + +E
Sbjct: 4   SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDE 63

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                 +M  S G  P++ + N +I+     G++++  +   E    G   D  T N L 
Sbjct: 64  AFGLLKSM-SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLL 122

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             Y + G + +   +   M +    P+VVTY  +I +  KA ++ +  E+F +M+ RG++
Sbjct: 123 NGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLR 182

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN  TY +L+  +S+ GL+ +   IL ++  S        +N  I  +     +E+   +
Sbjct: 183 PNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGV 242

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              M E+   PD ++++T+I  +   G  + A  ++ +M+
Sbjct: 243 VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMV 282



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 130/355 (36%), Gaps = 94/355 (26%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K +   +A   F+ M   GL+P+   YT L+  + + GLL+EA+  +N+M   S   P V
Sbjct: 162 KARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTE-SGFSPSV 220

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+  I       R +    ++ EM   G+    V+Y+TII G+ +  + +        
Sbjct: 221 VTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQE 280

Query: 126 MVESG----------------------------------GCHPDIFTLNSMISAYGNSGN 151
           MVE G                                  G  PD FT  ++I+AY   G+
Sbjct: 281 MVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGD 340

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILT--------------------------------- 178
           + K    ++E    G   D  T ++L                                  
Sbjct: 341 LNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDT 400

Query: 179 -----------------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
                            K +   G+  +   V + M +R   P    YN++I    + G+
Sbjct: 401 LIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGN 460

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           + K    +K+M H G  P+++T  +L+ A  K G+           E S+VI DT
Sbjct: 461 LPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGM---------NEEMSEVIGDT 506


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 148/309 (47%), Gaps = 8/309 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLL--DEAFSTINDMKSVSDCKPDVYTYSILIK 73
           L + M    L+P +  +  L++A  +SG L    AF  + +++ V   +PDV TY+ LI 
Sbjct: 85  LLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLLLEVRQVG-LRPDVITYNTLIS 143

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +C++    D    +  EM  +  EC     TYN ++  +G+  K ++ E  F  +VE G 
Sbjct: 144 ACSQGSNLDDAVAVFEEM--MASECRPDLWTYNAMVSVHGRCGKAQDAERMFRELVEKG- 200

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD  T NS++ A+   G+ + +E+   E    G K D  T N +   YG+ G  D   
Sbjct: 201 FKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLAL 260

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + D M+     P  VTY ++I++ GK   I    +  ++M   G+KP  +T+ +L+ AY
Sbjct: 261 GLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAY 320

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           +K G   +       +  S V  D   +  ++    ++GD+ K+  L+ TM      PDN
Sbjct: 321 AKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDN 380

Query: 312 ITFATMIQA 320
             +  M+ A
Sbjct: 381 ALYQVMLAA 389



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 142/297 (47%), Gaps = 12/297 (4%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF------HRF 81
           +V V+ A++  Y +SG  D+    ++ M+   + +PD+ +++ LI +  K         F
Sbjct: 62  TVQVFNAMMGVYARSGRFDDVRQLLDAMRG-QELEPDLVSFNTLINARAKSGCLAPGSAF 120

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           DL    L E+  +G+    +TYNT+I    +    ++  + F  M+ S  C PD++T N+
Sbjct: 121 DL----LLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASE-CRPDLWTYNA 175

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           M+S +G  G  +  E+ + E    G K D  T N L  ++ + G  D +  V + + +  
Sbjct: 176 MVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAG 235

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
           F    +TYN +I  +GK G ++     + +M+  G  P+++TY  L+ +  K   I    
Sbjct: 236 FKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAG 295

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
            +L ++ ++ +      F+ +I AY + G  E+    F  M      PD + +  M+
Sbjct: 296 KVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVML 352



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 4/290 (1%)

Query: 7   CKQPEQA-SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           C  P  A  LL EV    GL+P V  Y  L+SA  Q   LD+A +   +M + S+C+PD+
Sbjct: 113 CLAPGSAFDLLLEVR-QVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMA-SECRPDL 170

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           +TY+ ++    +  +    E++  E+   G +  AVTYN+++  + K    + +E     
Sbjct: 171 WTYNAMVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEE 230

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           +V +G    D  T N+MI  YG  G ++     Y+E   +G   D  T  +L  S G+  
Sbjct: 231 LVRAG-FKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMD 289

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
                  V++ M      PT+VT++ +I  + K G  E+    F  M   G+KP+ + Y 
Sbjct: 290 RISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYL 349

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            ++   +++G + K+ ++ + + N     D   +  +++A  +  + +++
Sbjct: 350 VMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEI 399



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 126/270 (46%), Gaps = 5/270 (1%)

Query: 2   VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
            ++  C Q    + A  +FE M++   +P +  Y A+VS +G+ G   +A     ++   
Sbjct: 140 TLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFRELVE- 198

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              KPD  TY+ L+ +  K    D +E++  E+   G +   +TYNT+I  YGK  + + 
Sbjct: 199 KGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDL 258

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               +  M  + GC PD  T   +I + G    I    K   E    G+K  + T + L 
Sbjct: 259 ALGLYDEM-RALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALI 317

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y + G  ++       M      P  + Y ++++   ++G + K+   ++ M + G +
Sbjct: 318 CAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYR 377

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           P++  Y  +++A +K     +++++++ +E
Sbjct: 378 PDNALYQVMLAALAKGNEYDEIEAVVQDME 407



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 118/262 (45%), Gaps = 3/262 (1%)

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIF 137
           RFD + ++L  M    +E   V++NT+I+   K+       S+F  ++E    G  PD+ 
Sbjct: 78  RFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAP-GSAFDLLLEVRQVGLRPDVI 136

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T N++ISA     N++     + E      + D+ T N +   +GR G       +   +
Sbjct: 137 TYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFREL 196

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
            ++ F P  VTYN ++  F K G  + +E   +++   G K + ITY +++  Y K G +
Sbjct: 197 VEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRL 256

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
                +  ++       D   +  +I + G+   +   G++   M +    P  +TF+ +
Sbjct: 257 DLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSAL 316

Query: 318 IQAYNALGMTEAAQNLENKMIA 339
           I AY   G  E A    + M+A
Sbjct: 317 ICAYAKGGRREEAVRTFSHMVA 338



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 116/236 (49%), Gaps = 4/236 (1%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW--Y 159
            +N ++  Y ++ +F+++     AM       PD+ + N++I+A   SG +     +   
Sbjct: 65  VFNAMMGVYARSGRFDDVRQLLDAM-RGQELEPDLVSFNTLINARAKSGCLAPGSAFDLL 123

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
            E   +G++ D+ T N L  +  +    D   +V + M      P + TYN ++   G+ 
Sbjct: 124 LEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRC 183

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G  +  E  F+++  +G KP+++TY SL+ A++K G    V+ +  ++  +    D   +
Sbjct: 184 GKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITY 243

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
           N +I  YG+ G ++    L+  M+   C PD +T+  +I +   +  +++A + LE
Sbjct: 244 NTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLE 299



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 144/318 (45%), Gaps = 6/318 (1%)

Query: 24  GLK--PSVD--VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           GLK  PS+D  ++ AL+ AY +SGL + A +  + M       P + + + ++++     
Sbjct: 615 GLKQEPSIDRRIWNALIHAYAESGLYEHARAVFDIMIEKGPL-PTIDSVNGMMRALIIDG 673

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R D +  I+ E+  +G + S  T   ++D + KA    E+   ++ M E+G   P++   
Sbjct: 674 RLDELYVIVQELQDMGFKISKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYL-PNMHIY 732

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            SMIS    +     +E    E    G + D+  LN L   Y   G +DK   V   + +
Sbjct: 733 RSMISLLCRNKRYRDVELMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILE 792

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P   TYN +I  + +    E+      +M  +G+ P   +Y SL++A  KA L  +
Sbjct: 793 AGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQ 852

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
            + +  ++ +    L+   ++ ++  Y  A +  K  +L  +MKE    P   T   ++ 
Sbjct: 853 AEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMT 912

Query: 320 AYNALGMTEAAQNLENKM 337
           +Y   G  + A+ + N +
Sbjct: 913 SYGTAGHPDEAEKVLNSL 930



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 146/311 (46%), Gaps = 2/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  +F++M+  G  P++D    ++ A    G LDE +  + +++ +   K    T  +
Sbjct: 641 EHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMG-FKISKSTVIL 699

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++ + TK      + KI   M   G   +   Y ++I    + K++ ++E     M E  
Sbjct: 700 MLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKRYRDVELMVVEM-ERA 758

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD+  LN+++  Y  +GN +K  + Y+     G++ +  T N L   Y R    ++ 
Sbjct: 759 GFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEG 818

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            ++++ M K+   P + +Y  ++   GKA   E+ E+ F++++ +G + N   Y  L+  
Sbjct: 819 FTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKI 878

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y  A    K + +L  ++   +       + ++++YG AG  ++  ++  ++K       
Sbjct: 879 YRDACNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTAGHPDEAEKVLNSLKSSSLEVS 938

Query: 311 NITFATMIQAY 321
            + ++T+  AY
Sbjct: 939 TLPYSTVFNAY 949



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 90/172 (52%), Gaps = 2/172 (1%)

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
           A +Q  N +   Y R+G +D +R ++D M+ +   P +V++N +I    K+G +     +
Sbjct: 61  ATVQVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAF 120

Query: 229 --FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
               +++  G++P+ ITY +L+SA S+   +    ++  ++  S+   D   +N ++S +
Sbjct: 121 DLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVH 180

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           G+ G  +    +F  + E+   PD +T+ +++ A+   G  +  + +  +++
Sbjct: 181 GRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELV 232



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 92/204 (45%), Gaps = 4/204 (1%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-- 197
           N+M+  Y  SG  + + +  +      ++ D+ + N L  +  ++G      S  D +  
Sbjct: 67  NAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAP-GSAFDLLLE 125

Query: 198 -QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
            ++    P V+TYN +I    +  +++     F++M     +P+  TY ++VS + + G 
Sbjct: 126 VRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGK 185

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
               + + R++       D   +N ++ A+ + GD + +  +   +       D IT+ T
Sbjct: 186 AQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNT 245

Query: 317 MIQAYNALGMTEAAQNLENKMIAM 340
           MI  Y  +G  + A  L ++M A+
Sbjct: 246 MIHMYGKMGRLDLALGLYDEMRAL 269



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 46/374 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  +   A  + E M   GLKP++  ++AL+ AY + G  +EA  T + M + S  KP
Sbjct: 285 LGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVA-SGVKP 343

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   Y +++    +      +  +   M   G       Y  ++    K  +++E+E+  
Sbjct: 344 DRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEIEAVV 403

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M      +P + +     S    +  I +  K   +  L G + D ++L  +  +Y  
Sbjct: 404 QDMEVVCQMNPQLVS-----SILIKAECISQGAKLLKKACLQGHEPDSKSLLSILDAYET 458

Query: 184 AGMYDKMRSVMDFMQKRF--------------------------------------FFPT 205
            G +++  S++ F+++                                        F   
Sbjct: 459 TGKHEEGLSLLQFIREHVPSSCNLISECSIMLLCKNQKIAAAMQEYSSMQMLKCGSFGQD 518

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
              Y  +I    +A    +  + F  M+  G++P+   Y S++SAY K G       ++ 
Sbjct: 519 CNLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLMD 578

Query: 266 QVENSDVILDTPFFNC-IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           +   S + L+       +I AYG+   + +  E F+   ++    D   +  +I AY   
Sbjct: 579 EAVQSGISLNILSSRVTMIEAYGKI-KLWQHAENFVKGLKQEPSIDRRIWNALIHAYAES 637

Query: 325 GMTEAAQNLENKMI 338
           G+ E A+ + + MI
Sbjct: 638 GLYEHARAVFDIMI 651



 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK K  EQA  LFE + S G + +  +Y  L+  Y  +    +A   +  MK     +P 
Sbjct: 845 GKAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKE-DGIEPT 903

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112
           + T  IL+ S       D  EK+L  +    +E S + Y+T+ + Y K
Sbjct: 904 IATMHILMTSYGTAGHPDEAEKVLNSLKSSSLEVSTLPYSTVFNAYLK 951


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 164/334 (49%), Gaps = 2/334 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K  + A  LF+ M + G++P+V  Y++L+S     G   +A   ++DM       P
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 324

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV+T+S LI +  K  +    EK+  EM    I+ S VTY+++I+G+    + +E +  F
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV S  C PD+ T N++I  +     +E+  + + E +  G+  +  T NIL +   +
Sbjct: 385 EFMV-SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  D  + +   M      P ++TYN +++   K G +EK    F+ ++   M+P   T
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 503

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  ++    KAG +     +   +    V  D   +N +IS + + G  E+   LF  MK
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           E   +P++  + T+I+A    G  EA+  L  +M
Sbjct: 564 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 153/325 (47%), Gaps = 2/325 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +  +A  L + M++ G +P +  Y  +V+   + G  D AF+ +N M+     +P V  Y
Sbjct: 201 KASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ-GKLEPGVLIY 259

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I    K+   D    +  EM   GI  + VTY+++I       ++ +     S M+E
Sbjct: 260 NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
               +PD+FT +++I A+   G + + EK Y+E     +   I T + L   +      D
Sbjct: 320 RK-INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           + + + +FM  +  FP VVTYN +I+ F K   +E+  E F++M  RG+  N++TY  L+
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 438

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               +AG       I +++ +  V  +   +N ++    + G +EK   +F  ++     
Sbjct: 439 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 498

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
           P   T+  MI+     G  E   +L
Sbjct: 499 PTIYTYNIMIEGMCKAGKVEDGWDL 523



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 145/311 (46%), Gaps = 2/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF  M+     PS+  ++ L+SA  +    D   S    M+++     + YTYSI
Sbjct: 63  DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG-IPHNHYTYSI 121

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  +  L   +L +M  LG E + VT +++++GY  +K+  E  +    M  + 
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT- 180

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+  T N++I          +     +     G + D+ T  ++     + G  D  
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            ++++ M++    P V+ YN +I+   K  H++     FK+M+ +G++PN +TY SL+S 
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G       +L  +    +  D   F+ +I A+ + G + +  +L+  M +R   P 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360

Query: 311 NITFATMIQAY 321
            +T++++I  +
Sbjct: 361 IVTYSSLINGF 371



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 147/332 (44%), Gaps = 37/332 (11%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+  +A  L + M   G +P+   +  L+          EA + I+ M +   C+PD+ T
Sbjct: 165 KRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVA-KGCQPDLVT 223

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y +++    K    DL   +L +M    +E   + YNTIIDG  K K  ++  + F  M 
Sbjct: 224 YGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM- 282

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+ G  P++ T +S+IS   N G      +W                             
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYG------RWS---------------------------- 308

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D  R + D ++++   P V T++ +I+ F K G + + E+ + +M  R + P+ +TY SL
Sbjct: 309 DASRLLSDMIERKIN-PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++ +     + +   +   + +     D   +N +I  + +   VE+  E+F  M +R  
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 427

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           V + +T+  +IQ     G  + AQ +  +M++
Sbjct: 428 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 111/267 (41%), Gaps = 37/267 (13%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ M+   + PS+  Y++L++ +     LDEA      M S   C PDV TY+ L
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS-KHCFPDVVTYNTL 402

Query: 72  IKSCTKFHRF-----------------------------------DLIEKILAEMSYLGI 96
           IK   K+ R                                    D+ ++I  EM   G+
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
             + +TYNT++DG  K  K E+    F  +  S    P I+T N MI     +G +E   
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK-MEPTIYTYNIMIEGMCKAGKVEDGW 521

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
             +   +L GVK D+   N +   + R G  ++  ++   M++    P    YN +I   
Sbjct: 522 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 581

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            + G  E   E  K+M+  G   ++ T
Sbjct: 582 LRDGDREASAELIKEMRSCGFAGDAST 608



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 58/130 (44%)

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY+I+I  F +   +        KM   G +PN +T  SL++ Y  +  I +  +++ Q+
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
             +    +T  FN +I          +   L   M  + C PD +T+  ++      G T
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 328 EAAQNLENKM 337
           + A NL NKM
Sbjct: 238 DLAFNLLNKM 247


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 158/340 (46%), Gaps = 5/340 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA  L + M   G  P V  Y  LV+   + G LDEA   +NDM S S C+P+V T++I+
Sbjct: 257 QAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS-SGCQPNVITHNII 315

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           ++S     R+   EK+LA+M   G   S VT+N +I+   +             M + G 
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG- 374

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  + N ++  +     +++  ++       G   DI T N +  +  + G  +   
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +++ +  +   P ++TYN VI+   KAG   K  +   +M+ + +KP++ITY SLV   
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGL 494

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           S+ G + +      + E   V  +   FN I+    +    ++  +  + M  R C P  
Sbjct: 495 SREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTE 554

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI---AMKENSGKKL 348
            ++  +I+     GM + A  L N++     MK +S +++
Sbjct: 555 TSYTILIEGLAYEGMAKEALELLNELCNKGLMKRSSAEQV 594



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 166/347 (47%), Gaps = 21/347 (6%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C+  +  +A+ + EV+   G  P V  Y  ++S Y ++G ++ A S ++ M SVS
Sbjct: 143 LIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM-SVS 201

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID------GYGKA 113
              PDV TY+ +++S     +     ++L  M         +TY  +I+      G G+A
Sbjct: 202 ---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQA 258

Query: 114 KKF-EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
            K  +EM           GC PD+ T N +++     G +++  K+ N+    G + ++ 
Sbjct: 259 MKLLDEMRDR--------GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVI 310

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T NI+ +S    G +     ++  M ++ F P+VVT+NI+I    + G + +  +  +KM
Sbjct: 311 THNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM 370

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
              G +PNS++Y  L+  + K   + +    L ++ +     D   +N +++A  + G V
Sbjct: 371 PKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKV 430

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           E   E+   +  + C P  IT+ T+I      G T  A  L ++M A
Sbjct: 431 EDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA 477



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 136/328 (41%), Gaps = 32/328 (9%)

Query: 41  QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 100
           ++G L+E F  + +M    +  PD+   + LI+   +  +     KIL  +   G     
Sbjct: 114 RTGELEEGFKFLENMVYHGNV-PDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDV 172

Query: 101 VTYNTIIDGYGKAKK-------FEEMESS---------FSAMVESG-------------- 130
           +TYN +I GY KA +        + M  S           ++ +SG              
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ 232

Query: 131 -GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
             C+PD+ T   +I A      + +  K  +E    G   D+ T N+L     + G  D+
Sbjct: 233 RDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDE 292

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
               ++ M      P V+T+NI++ +    G     E+    M  +G  P+ +T+  L++
Sbjct: 293 AIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
              + GL+ +   IL ++       ++  +N ++  + +   +++  E    M  R C P
Sbjct: 353 FLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYP 412

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
           D +T+ TM+ A    G  E A  + N++
Sbjct: 413 DIVTYNTMLTALCKDGKVEDAVEILNQL 440



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 14/236 (5%)

Query: 111 GKAKKFEEMESSFSAMVESGGCH----PDIFTL-----NSMISAYGNSGNIEKMEKWYNE 161
           G+A+KF+ + S  S    +G  H       F L     N+ +     +G +E+  K+   
Sbjct: 70  GRAQKFDTLASGHSN--SNGNGHFSSANSSFVLEDVESNNHLRQLVRTGELEEGFKFLEN 127

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G   DI     L + + R G   K   +++ ++     P V+TYN++I  + KAG 
Sbjct: 128 MVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGE 187

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           I        +M    + P+ +TY +++ +   +G + +   +L ++   D   D   +  
Sbjct: 188 INNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTI 244

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I A  +   V +  +L   M++R C PD +T+  ++      G  + A    N M
Sbjct: 245 LIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V  N  +    + G +E+  ++ + M + G  P+ I   +L+  + + G   K   IL  
Sbjct: 103 VESNNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEV 162

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQAYNALG 325
           +E S  + D   +N +IS Y +AG++       L++ +R  V PD +T+ T++++    G
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNA----LSVLDRMSVSPDVVTYNTILRSLCDSG 218

Query: 326 MTEAAQNLENKMI 338
             + A  + ++M+
Sbjct: 219 KLKQAMEVLDRML 231



 Score = 37.7 bits (86), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +  +A  L + M +  LKP    Y++LV    + G +DEA    ++ + +   +P
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG-VRP 517

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEM 119
           +  T++ ++    K  + D     L  M   G + +  +Y  +I+G    G AK+  E+
Sbjct: 518 NAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALEL 576


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 160/341 (46%), Gaps = 5/341 (1%)

Query: 2   VMLGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +++G C++ +  S   +F+ M   G + +   YT L+        +DEA      MK   
Sbjct: 259 LIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKD-D 317

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           DC P V TY++LIK+     R      ++ EM   GI+ +  TY  +ID      K E+ 
Sbjct: 318 DCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKA 377

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 M+E G   P++ T N++I+ Y   G IE             ++ + +T N L K
Sbjct: 378 RELLGQMLEKG-LMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIK 436

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y +  ++  M  V++ M +R   P VVTYN +I+   ++G+ +        M  RG+ P
Sbjct: 437 GYCKRNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  TY S++ +  K+  + +   +   +E  DVI +   +  +I  Y +AG V +   + 
Sbjct: 496 DPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLML 555

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             M  ++C+P+++TF  +I      G  + A  LE KM+ +
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKI 596



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 142/314 (45%), Gaps = 3/314 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML D + P++  Y  +V+ Y + G ++EA   ++ M   +   PD +TY+ LI    +  
Sbjct: 209 MLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVS-MIVEAGLDPDFFTYTSLIMGYCQRK 267

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             D   K+  EM   G   + V Y  +I G    ++ +E    F  M +   C+P + T 
Sbjct: 268 DLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKM-KDDDCYPTVRTY 326

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
             +I A   S    +      E    G+K +I T  +L  S       +K R ++  M +
Sbjct: 327 TVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLE 386

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           +   P V+TYN +I  + K G IE   +  + M+ R ++PN+ TY  L+  Y K   + K
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHK 445

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +L ++    V+ D   +N +I    ++G+ +    L   M +R  VPD  T+ +MI 
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMID 505

Query: 320 AYNALGMTEAAQNL 333
           +       E A +L
Sbjct: 506 SLCKSKRVEEACDL 519



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 161/371 (43%), Gaps = 41/371 (11%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           ++ ++A  LF  M  D   P+V  YT L+ A   S    EA + + +M+     KP+++T
Sbjct: 302 RRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEE-KGIKPNIHT 360

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y++LI S     + +   ++L +M   G+  + +TYN +I+GY K    E+       M 
Sbjct: 361 YTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELM- 419

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           ES    P+  T N +I  Y    N+ K     N+     V  D+ T N L     R+G +
Sbjct: 420 ESRNLRPNTRTYNELIKGYCKR-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNF 478

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D    ++  M  R   P   TY  +I++  K+  +E+  + F  ++ + + PN + Y +L
Sbjct: 479 DSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTAL 538

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV-------EKMGEL-- 298
           +  Y KAG + +   +L ++ + + + ++  FN +I      G +       EKM ++  
Sbjct: 539 IDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDL 598

Query: 299 --------------------------FLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
                                     F  M      PD  T+ T IQ Y   G  + A++
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAED 658

Query: 333 LENKMIAMKEN 343
           +  K   MKEN
Sbjct: 659 MVAK---MKEN 666



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 151/328 (46%), Gaps = 4/328 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +  +CK  E+A  L   ML  GL P+V  Y AL++ Y + G++++A   +  M+S  + +
Sbjct: 368 LCSQCKL-EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMES-RNLR 425

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+  TY+ LIK   K +    +  +L +M    +    VTYN++IDG  ++  F+     
Sbjct: 426 PNTRTYNELIKGYCKRNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRL 484

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            S M + G   PD +T  SMI +   S  +E+    ++      V  ++     L   Y 
Sbjct: 485 LSLMNDRGLV-PDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYC 543

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG  ++   +++ M  +   P  +T+N +I      G +++     +KM    ++P   
Sbjct: 544 KAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVS 603

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T   L+    K G         +Q+ +S    D   +   I  Y + G ++   ++   M
Sbjct: 604 TDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKM 663

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
           KE    PD  T++++I+ Y  LG T +A
Sbjct: 664 KENGVSPDLFTYSSLIKGYGDLGRTNSA 691



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 150/338 (44%), Gaps = 7/338 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    E+A+    +++  GL P    YT+L+  Y Q   LD AF    +M  +  C+
Sbjct: 227 GYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEM-PLKGCR 285

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-GKAKKFEEMES 121
            +   Y+ LI       R D    +  +M       +  TY  +I    G  +K E +  
Sbjct: 286 RNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEAL-- 343

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           +    +E  G  P+I T   +I +  +   +EK  +   +    G+  ++ T N L   Y
Sbjct: 344 NLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGY 403

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + GM +    V++ M+ R   P   TYN +I+ + K  ++ K      KM  R + P+ 
Sbjct: 404 CKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKR-NVHKAMGVLNKMLERKVLPDV 462

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY SL+    ++G       +L  + +  ++ D   +  +I +  ++  VE+  +LF +
Sbjct: 463 VTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDS 522

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           ++++  +P+ + +  +I  Y   G    A  +  KM++
Sbjct: 523 LEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLS 560



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 133/316 (42%), Gaps = 50/316 (15%)

Query: 70  ILIKSCTK----FHRFDLIEKILAEMSY-----LGIECSAVTYNTIIDGYGKAKKFEEME 120
           ++IKSC          DL  K+  + S+     L I C    YNT+++   +    +EM+
Sbjct: 148 LMIKSCDSVADTLFVLDLCRKMNKDESFELKYKLIIGC----YNTLLNSLARFGLVDEMK 203

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +  M+E   C P+I+T N M++ Y   GN+E+  ++ +     G+  D  T   L   
Sbjct: 204 QVYMEMLEDKVC-PNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMG 262

Query: 181 YGRAGMYD--------------------------------KMRSVMDF---MQKRFFFPT 205
           Y +    D                                ++   MD    M+    +PT
Sbjct: 263 YCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPT 322

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V TY ++I+    +    +     K+M+ +G+KPN  TY  L+ +      + K   +L 
Sbjct: 323 VRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLG 382

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           Q+    ++ +   +N +I+ Y + G +E   ++   M+ R+  P+  T+  +I+ Y    
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN 442

Query: 326 MTEAAQNLENKMIAMK 341
           + +A   L NKM+  K
Sbjct: 443 VHKAMGVL-NKMLERK 457



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 132/304 (43%), Gaps = 27/304 (8%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K+ E+A  LF+ +    + P+V +YTAL+  Y ++G ++EA   +  M S  +C P
Sbjct: 507 LCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLS-KNCLP 565

Query: 64  DVYTYSILIKS-CT--KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           +  T++ LI   CT  K     L+E+   +M  + ++ +  T   +I    K   F+   
Sbjct: 566 NSLTFNALIHGLCTDGKLKEATLLEE---KMVKIDLQPTVSTDTILIHRLLKDGDFDHAY 622

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M+ SG   PD  T  + I  Y   G ++  E    +    GV  D+ T + L K 
Sbjct: 623 RRFQQMLSSGT-KPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKG 681

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-----TFGKAGHIEK--------ME- 226
           YG  G  +    V+  M      P+  T+  +I+      +GK    E         ME 
Sbjct: 682 YGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEF 741

Query: 227 ----EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF-FNC 281
               E  +KM   G+ PN+ +Y  L+    + G +   + +   ++  + I  +   FN 
Sbjct: 742 DIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNA 801

Query: 282 IISA 285
           ++S 
Sbjct: 802 LLSC 805



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 103/249 (41%), Gaps = 19/249 (7%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC---- 75
           M  +G+ P +  Y++L+  YG  G  + AF  +  M   + C+P  +T+  LIK      
Sbjct: 663 MKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHD-TGCEPSQHTFLSLIKHLLEMK 721

Query: 76  --------------TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
                         +    FD++ ++L +M   G+  +A +Y  ++ G  +       E 
Sbjct: 722 YGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEK 781

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M +  G  P     N+++S         +  K  ++   +G    +++  IL    
Sbjct: 782 VFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRL 841

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G  ++  SV   + +  ++   + + I+I+  GK G +E   E F  M+  G   +S
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSS 901

Query: 242 ITYCSLVSA 250
            TY  L+  
Sbjct: 902 QTYSLLIEG 910


>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 426

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 153/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A + +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALAWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M+ RG++PNSITY +++S +SK G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAGSGRIEEA 339



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 154/352 (43%), Gaps = 39/352 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVMPNTVSYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  + K G +++    F+K++                   
Sbjct: 241 LIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + +G I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGSGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A N+
Sbjct: 361 MIHLFSKYKKYSNVVEVFDKMRGLGYFPDSNVTALVLNAYGKLHEFDKANNV 412



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 106/262 (40%), Gaps = 31/262 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 160 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 218

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  + K  K       F+
Sbjct: 219 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWSKIGKLDRAAMLFQ 278

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        +  M+   E  G              PD    ++ I     SG IE+
Sbjct: 279 KLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGSGRIEE 338

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +   + +   Y  +  V D M+   +FP      +V+ 
Sbjct: 339 ATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYSNVVEVFDKMRGLGYFPDSNVTALVLN 398

Query: 215 TFGKAGHIEKMEEYFKKMKHRG 236
            +GK    +K    + +M+  G
Sbjct: 399 AYGKLHEFDKANNVYIEMQDEG 420



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALAWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 153/336 (45%), Gaps = 3/336 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK K   +A  +F  + S   KP+   Y +++    Q G  ++     ++M +  DC 
Sbjct: 140 ILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCF 199

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TYS+L+ +  K  R D   ++  EM   G+  +A  Y T++  Y K+   +E    
Sbjct: 200 PDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSG--DEKALG 257

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
               ++  GC P +FT   +I   G SG +E     +      G K D+  +N L   +G
Sbjct: 258 LVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFG 317

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKPNS 241
           +AG  +    + D M+     P VVTYN VI+  F       +   +F+KMK  G+ P+S
Sbjct: 318 KAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSS 377

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY  L+  + K   + K   +L +++          +  +I+A G+A   E   ELFL 
Sbjct: 378 FTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLE 437

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +KE         +A MI+     G    A +L N+M
Sbjct: 438 LKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEM 473



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 153/327 (46%), Gaps = 1/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  L + M   G  P+V  YT L+   G+SG +++A+S   +M     CKPDV   + 
Sbjct: 253 EKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLK-DGCKPDVVLINN 311

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  R +   K+  +M  L    + VTYNT+I    ++K      +S+   +++ 
Sbjct: 312 LINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKAN 371

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P  FT + +I  +  +  +EK      E +  G          L  + G+A  Y+  
Sbjct: 372 GVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAA 431

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   +++     +   Y ++I+  GK G   +  + F +MK  G  P+   Y +L+S 
Sbjct: 432 NELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSG 491

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +AG+I +  S LR +E +    D    N I++   + G  E+  E+F+ MK+    PD
Sbjct: 492 LVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPD 551

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            +++ T++ + +  GM E A  L  +M
Sbjct: 552 AVSYNTILGSLSRSGMFEEAAKLMREM 578



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 148/325 (45%), Gaps = 40/325 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + E A  +F  ML DG KP V +   L++ +G++G L++A    + M+S+  C P
Sbjct: 281 LGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLK-CAP 339

Query: 64  DV------------------------------------YTYSILIKSCTKFHRFDLIEKI 87
           +V                                    +TYSILI    K +R +    +
Sbjct: 340 NVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLL 399

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-GGCHPDIFTLNSMISAY 146
           L EM   G       Y ++I+  GKAK++E     F  + E+ G     I+ +  MI   
Sbjct: 400 LEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSSARIYAV--MIKNL 457

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           G  G   +    +NE   +G   D+   N L     RAGM ++  S +  M++    P +
Sbjct: 458 GKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDL 517

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            ++NI++    + G  E+  E F KMK   +KP++++Y +++ + S++G+  +   ++R+
Sbjct: 518 NSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMRE 577

Query: 267 VENSDVILDTPFFNCIISAYGQAGD 291
           + +     D   ++ I+ A G+  +
Sbjct: 578 MGSRGFEYDHITYSSILEAVGKVDE 602



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 116/280 (41%), Gaps = 39/280 (13%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMES 121
           D+ TY  LI+       F  + K++ EM      C       + ++   GKAK   +  S
Sbjct: 94  DLTTYMPLIRCLDDCGLFGEMWKMIQEM-VRSPTCVIGPADLSEVVKILGKAKMVNKALS 152

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F   ++S  C P   T NSMI      G+ EK+ + Y+E   M  + D           
Sbjct: 153 VFY-QIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHE---MCNEGDC---------- 198

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
                                FP  +TY++++  F K G  +     F +MK  G+ P +
Sbjct: 199 ---------------------FPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTA 237

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             Y +L++ Y K+G   K   +++++++         +  +I   G++G VE    +FL 
Sbjct: 238 KIYTTLLAIYFKSG-DEKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLN 296

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           M +  C PD +    +I  +   G  E A  L ++M ++K
Sbjct: 297 MLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLK 336



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 34/149 (22%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV----- 58
           LGKC +P +A  LF  M   G  P V  Y AL+S   ++G+++EAFS +  M+       
Sbjct: 457 LGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPD 516

Query: 59  -----------------------------SDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
                                        S  KPD  +Y+ ++ S ++   F+   K++ 
Sbjct: 517 LNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMR 576

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           EM   G E   +TY++I++  GK  + +E
Sbjct: 577 EMGSRGFEYDHITYSSILEAVGKVDEDDE 605


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 166/351 (47%), Gaps = 14/351 (3%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C++    +A  L + M+ DGL+P+   Y  +V    + G    A + +  M+ +S
Sbjct: 87  LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELS 146

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KPDV  YS +I    K  R    + +  EM   GI    VTY+ +I+G+  + K+ E 
Sbjct: 147 HIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEA 206

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +     M+      PD+ T + +I+A    G++   +    E    GV  ++ T N L  
Sbjct: 207 QRLLQEMLVRK-ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLD 265

Query: 180 SYGRAG-------MYDKM-RSVMDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEY 228
               +G       M+  M +S+MD      F    P V TYNI+I      G   + EE 
Sbjct: 266 GLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEEL 325

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           +++M HRG+ P+++TY S+++   K   + +   +   + +     +   FN +I+ Y +
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           AG V+   ELF  M  R  V + IT+ T+I+ +  +G    + ++  +MI+
Sbjct: 386 AGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMIS 436



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 133/283 (46%), Gaps = 11/283 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  LF  M   G+ P +  Y+ +++ +  SG   EA   + +M  V    P
Sbjct: 162 LWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEML-VRKISP 220

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T+S LI +  K    +  + +L EM   G+  + VT NT++DG   + K ++    F
Sbjct: 221 DVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMF 280

Query: 124 SAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
            AM +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  T
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVT 340

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            + +     +    D+   + D M  + F P +VT+N +I  + KAG ++   E F +M 
Sbjct: 341 YSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMG 400

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            RG+  N+ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 401 RRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDT 443



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 115/257 (44%), Gaps = 14/257 (5%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L + ML   + P V  ++ L++A  + G L+ A   + +M S   C P+V T + L
Sbjct: 205 EAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC-PNVVTCNTL 263

Query: 72  IKS-CTKFHRFDLIE----------KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           +   C      D +E           I A  ++ G+E    TYN +I G     KF E E
Sbjct: 264 LDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAE 323

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +  M   G   PD  T +SMI+       +++  + ++         +I T N L   
Sbjct: 324 ELYEEMPHRG-IVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITG 382

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y +AGM D    +   M +R      +TY  +I  F K G+I    + F++M   G+ P+
Sbjct: 383 YCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPD 442

Query: 241 SITYCSLVSA-YSKAGL 256
           +IT  ++++  +SK  L
Sbjct: 443 TITIRNMLTGLWSKEEL 459



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 126/290 (43%), Gaps = 19/290 (6%)

Query: 53  NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112
           N++K       D+Y+++ILIK      +         +++ LG   + VT+NT++ G   
Sbjct: 3   NNIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCV 62

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
             +  E    F  M     C P++ T  ++++     G + +     +     G++ +  
Sbjct: 63  EDRVSEALDLFHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQI 117

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
           T   +    G   M D + S ++ ++K        P VV Y+ +I+   K G     +  
Sbjct: 118 TYGTIVD--GMCKMGDTV-SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNL 174

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F +M+ +G+ P+ +TY  +++ +  +G   +   +L+++    +  D   F+ +I+A  +
Sbjct: 175 FIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVK 234

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAY-------NALGMTEAAQ 331
            GD+    +L   M      P+ +T  T++          +AL M +A Q
Sbjct: 235 EGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 5/208 (2%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI++ N +I  + +   +      + +   +G    + T N L        + D++   +
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLC---VEDRVSEAL 70

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D   +    P VVT+  ++    + G + +      +M   G++PN ITY ++V    K 
Sbjct: 71  DLFHQ-MCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 255 GLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           G  +   ++LR++E  S +  D   ++ II    + G       LF+ M+++   PD +T
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189

Query: 314 FATMIQAYNALGMTEAAQNLENKMIAMK 341
           ++ MI  + + G    AQ L  +M+  K
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRK 217


>gi|410110059|gb|AFV61109.1| pentatricopeptide repeat-containing protein 123, partial
           [Acantholippia salsoloides]
          Length = 433

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 154/345 (44%), Gaps = 39/345 (11%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---------------------- 57
           M    L P    Y+ L++ +G+ GL D A S +  M+                       
Sbjct: 3   MRDRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCD 62

Query: 58  ------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
                        S   PD+  Y+  I    K   F     +++EM   G+  +  +Y+T
Sbjct: 63  YSKAISIFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASYST 122

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           ++  Y + KKF E  S FS + E   C  D+ T N MI  YG  G  ++ +K +     M
Sbjct: 123 LLTMYVENKKFLEALSVFSELREMK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKM 181

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK 
Sbjct: 182 GIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKA 241

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
               ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I A
Sbjct: 242 NNLIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVA 301

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           Y +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 YERAGLVAHAKRLLHELKS----PDNIPRDTAIHILAGAGRIEEA 342



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 160/344 (46%), Gaps = 41/344 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A ++ +G++ L  EA S I++M+ ++   P+  +YS L+   
Sbjct: 69  IFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMR-IAGVMPNTASYSTLLTMY 127

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +E+  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 128 VENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 186

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 187 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 243

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++ AY 
Sbjct: 244 LIQEMQGRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 303

Query: 253 KAGLIMKVDSILRQVENSDVI-LDTPF---------------FNCIISAYGQAGDV---E 293
           +AGL+     +L ++++ D I  DT                 F   I A G+  D+   E
Sbjct: 304 RAGLVAHAKRLLHELKSPDNIPRDTAIHILAGAGRIEEATYVFRRAIDA-GEVKDITVFE 362

Query: 294 KMGELFLTMKERHCV-------------PDNITFATMIQAYNAL 324
           +M  LF   K+   V             PD+   A ++ AY  L
Sbjct: 363 RMIHLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKL 406



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/347 (20%), Positives = 143/347 (41%), Gaps = 40/347 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M   G+ P+   Y+ L++ Y ++    EA S  ++++ +  C 
Sbjct: 91  VFGKAKLFREARSLISEMRIAGVMPNTASYSTLLTMYVENKKFLEALSVFSELREMK-CL 149

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 150 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 209

Query: 123 FSAM----------------------------------VESGGCHPDIFTLNSMISAYGN 148
           F  M                                  ++  G  P+  T +++IS +G 
Sbjct: 210 FRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQGRGIEPNSITYSTIISIWGK 269

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G +++    + +    GV+ D      +  +Y RAG+    + ++  ++     P  + 
Sbjct: 270 VGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKS----PDNIP 325

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
            +  I     AG IE+    F++    G   +   +  ++  +SK      V  +  ++ 
Sbjct: 326 RDTAIHILAGAGRIEEATYVFRRAIDAGEVKDITVFERMIHLFSKYKKYANVVEVFDKMR 385

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITF 314
                 D+     +++AYG+  + +K   +++ M+E  CV  D + F
Sbjct: 386 GLGYFPDSNVIALVLNAYGKLHEFDKANSVYMEMQEVGCVFSDEVHF 432



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 81/174 (46%)

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           +E     +  D  T + L   +G+ G++D   S +  M++      +V Y+ +IE   K 
Sbjct: 1   DEMRDRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKL 60

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
               K    F ++K  G  P+ + Y + ++ + KA L  +  S++ ++  + V+ +T  +
Sbjct: 61  CDYSKAISIFSRLKRSGFTPDLVAYNAXINVFGKAKLFREARSLISEMRIAGVMPNTASY 120

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           + +++ Y +     +   +F  ++E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 STLLTMYVENKKFLEALSVFSELREMKCLLDLTTCNIMIDVYGQLGMAKEADKL 174


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 162/336 (48%), Gaps = 8/336 (2%)

Query: 7   CKQPEQASLLFEVMLSD----GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           CK  +  +++F   LSD    G+   +  Y  L++AY + GL++EAF  +N   S    +
Sbjct: 268 CKDRKFENVMF--FLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSS-RGME 324

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P + TY+ ++    K  ++D  + +L EM  LG+  +A TYNT++    +     E +  
Sbjct: 325 PGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEI 384

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M   G   PD+ + +S+I     +G++ +    + E    G+  D     IL   + 
Sbjct: 385 FDEMSRRG-VLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFC 443

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G       + D M  R  F  VVTYN  +    K       +  F +M  RGM P+  
Sbjct: 444 RNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFY 503

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+ +L+  Y K G + K  ++   +  +++  D   +N +I  + +AG++ +  EL+  M
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +  +PD+I++ T++  + + G+   A NL ++M+
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQML 599



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 160/332 (48%), Gaps = 2/332 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F+ M   G+ P +  +++L+    ++G L +A     +M+  S   PD   Y+IL
Sbjct: 380 EAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER-SGIVPDNVIYTIL 438

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    +        K+  EM   G     VTYNT ++G  K K F + +  F+ MVE G 
Sbjct: 439 IDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGM 498

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD +T  ++I  Y   GN++K    +       +K D  T N L   + +AG   + +
Sbjct: 499 V-PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAK 557

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + D M ++   P  ++Y  V+  F  +G + +      +M  +G++PN +T  +L+  Y
Sbjct: 558 ELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGY 617

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            ++G + K    L ++ ++ +I D+  +N +I  Y +  ++EK   L   M++R    + 
Sbjct: 618 CRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNI 677

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           IT+  ++  + A G  + A+ +  KMI +  N
Sbjct: 678 ITYNLILNGFCAEGKMQEAEQVLRKMIEIGIN 709



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 148/349 (42%), Gaps = 49/349 (14%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMK------SVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           +Y  LV  Y Q+  L E       ++      S++ C         L+    +    DL 
Sbjct: 189 IYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNK-------LLGGLVRTGWVDLA 241

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            +I  E+   GIE +  T N +++   K +KFE +    S M E  G   DI T N++I+
Sbjct: 242 WEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDM-EGKGVFADIVTYNTLIN 300

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           AY   G +E+  +  N F+  G++  + T N +     + G YD+ + V+  M +    P
Sbjct: 301 AYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTP 360

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
              TYN ++    +  +I + +E F +M  RG+ P+ +++ SL+   ++ G + +     
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420

Query: 265 RQVENSDVILDTPFFNCIISAY---GQAGDVEKMGE------------------------ 297
           R++E S ++ D   +  +I  +   G   D  KM +                        
Sbjct: 421 REMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKK 480

Query: 298 --------LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                   LF  M ER  VPD  TF T+I+ Y   G  + A NL   M+
Sbjct: 481 KMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMV 529



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 123/249 (49%), Gaps = 4/249 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+     A +LF  M+  G+ P    +T L+  Y + G +D+A +    M   ++ K
Sbjct: 476 GLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVR-TNLK 534

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY+ LI    K       +++  +M    I    ++Y T+++G+  +    E  + 
Sbjct: 535 PDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNL 594

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+E  G  P++ T N++I  Y  SG++ K  ++ ++    G+  D  + N L   Y 
Sbjct: 595 CDQMLEK-GIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYL 653

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    +K   +++ M+KR     ++TYN+++  F   G +++ E+  +KM   G+ P+  
Sbjct: 654 KEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGA 713

Query: 243 TYCSLVSAY 251
           TY SL++ +
Sbjct: 714 TYSSLINGH 722



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 146/335 (43%), Gaps = 37/335 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA + F  M   G+ P   +YT L+  + ++G L +A    ++M +   C  DV TY+  
Sbjct: 415 QALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLA-RGCFMDVVTYNTF 473

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    K   F   + +  EM   G+     T+ T+I GY K    ++  + F AMV +  
Sbjct: 474 LNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTN- 532

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNE-----------------------------F 162
             PD  T N++I  +  +G + + ++ +++                              
Sbjct: 533 LKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEAL 592

Query: 163 NLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           NL       G++ ++ T N L K Y R+G   K    +  M      P   +YN +I+ +
Sbjct: 593 NLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGY 652

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            K  ++EK      +M+ RG++ N ITY  +++ +   G + + + +LR++    +  D 
Sbjct: 653 LKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDG 712

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
             ++ +I+ +    ++++       M +R  VPD+
Sbjct: 713 ATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDD 747



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 124/294 (42%), Gaps = 36/294 (12%)

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------- 126
           R  ++E +++   Y G     + Y+ ++  Y +AKK  E   +F  +             
Sbjct: 169 RVKVVESLISTCFYFG--SVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACN 226

Query: 127 ---------------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
                                V  GG   +++TLN M++A       E +  + ++    
Sbjct: 227 KLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGK 286

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           GV ADI T N L  +Y R G+ ++   +++    R   P ++TYN ++    K G  ++ 
Sbjct: 287 GVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRA 346

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           ++   +M   G+ PN+ TY +L+    +   I++   I  ++    V+ D   F+ +I  
Sbjct: 347 KDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGV 406

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             + G + +    F  M+    VPDN+ +  +I  +   G    A  + ++M+A
Sbjct: 407 LARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLA 460



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+S+G+ P    Y  L+  Y +   L++AF  IN+M+     + ++ TY++++       
Sbjct: 633 MISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEK-RGLQFNIITYNLILNGFCAEG 691

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           +    E++L +M  +GI     TY+++I+G+      +E       M++ G    D F
Sbjct: 692 KMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDRF 749


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 166/351 (47%), Gaps = 14/351 (3%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C++    +A  L + M+ DGL+P+   Y  +V    + G    A + +  M+ +S
Sbjct: 87  LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELS 146

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KPDV  YS +I    K  R    + +  EM   GI    VTY+ +I+G+  + K+ E 
Sbjct: 147 HIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEA 206

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +     M+      PD+ T + +I+A    G++   +    E    GV  ++ T N L  
Sbjct: 207 QRLLQEMLVRK-ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLD 265

Query: 180 SYGRAG-------MYDKM-RSVMDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEY 228
               +G       M+  M +S+MD      F    P V TYNI+I      G   + EE 
Sbjct: 266 GLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEEL 325

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           +++M HRG+ P+++TY S+++   K   + +   +   + +     +   FN +I+ Y +
Sbjct: 326 YEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCK 385

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           AG V+   ELF  M  R  V + IT+ T+I+ +  +G    + ++  +MI+
Sbjct: 386 AGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMIS 436



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 133/283 (46%), Gaps = 11/283 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  LF  M   G+ P +  Y+ +++ +  SG   EA   + +M  V    P
Sbjct: 162 LWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEML-VRKISP 220

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T+S LI +  K    +  + +L EM   G+  + VT NT++DG   + K ++    F
Sbjct: 221 DVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMF 280

Query: 124 SAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
            AM +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  T
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVT 340

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            + +     +    D+   + D M  + F P +VT+N +I  + KAG ++   E F +M 
Sbjct: 341 YSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMG 400

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            RG+  N+ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 401 RRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDT 443



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 120/270 (44%), Gaps = 13/270 (4%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L + ML   + P V  ++ L++A  + G L+ A   + +M S   C P+V T + L
Sbjct: 205 EAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC-PNVVTCNTL 263

Query: 72  IKS-CTKFHRFDLIE----------KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           +   C      D +E           I A  ++ G+E    TYN +I G     KF E E
Sbjct: 264 LDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAE 323

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +  M   G   PD  T +SMI+       +++  + ++         +I T N L   
Sbjct: 324 ELYEEMPHRG-IVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITG 382

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y +AGM D    +   M +R      +TY  +I  F K G+I    + F++M   G+ P+
Sbjct: 383 YCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPD 442

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           +IT  ++++       + K  ++L +++ S
Sbjct: 443 TITIRNMLTGLWSKEELKKALAMLEELQMS 472



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 126/290 (43%), Gaps = 19/290 (6%)

Query: 53  NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112
           N++K       D+Y+++ILIK      +         +++ LG   + VT+NT++ G   
Sbjct: 3   NNIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCV 62

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
             +  E    F  M     C P++ T  ++++     G + +     +     G++ +  
Sbjct: 63  EDRVSEALDLFHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQI 117

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
           T   +    G   M D + S ++ ++K        P VV Y+ +I+   K G     +  
Sbjct: 118 TYGTIVD--GMCKMGDTV-SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNL 174

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F +M+ +G+ P+ +TY  +++ +  +G   +   +L+++    +  D   F+ +I+A  +
Sbjct: 175 FIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVK 234

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAY-------NALGMTEAAQ 331
            GD+    +L   M      P+ +T  T++          +AL M +A Q
Sbjct: 235 EGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 5/208 (2%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI++ N +I  + +   +      + +   +G    + T N L        + D++   +
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLC---VEDRVSEAL 70

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D   +    P VVT+  ++    + G + +      +M   G++PN ITY ++V    K 
Sbjct: 71  DLFHQ-MCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 255 GLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           G  +   ++LR++E  S +  D   ++ II    + G       LF+ M+++   PD +T
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189

Query: 314 FATMIQAYNALGMTEAAQNLENKMIAMK 341
           ++ MI  + + G    AQ L  +M+  K
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRK 217


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 2/327 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++  +A  L + M    LKP+V VY  L+  + + G  DEAF  I +M +    +P
Sbjct: 324 LCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAG-VQP 382

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TY  L++   K  + D    +L +M         +TYN II+G+ +    ++     
Sbjct: 383 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLL 442

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M E+ G  P+++T + MI     SG  EK      E    G+K +      L   Y R
Sbjct: 443 SEM-ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR 501

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G       + D M K    P +  YN +I    K G +E+  +YF +M+ RG+ PN  T
Sbjct: 502 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 561

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+  Y K G +   + +++++ ++ +  +   +  ++ +Y ++ D+EK+   F +M 
Sbjct: 562 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSML 621

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAA 330
           ++  + DN  +  +I   ++ G  EAA
Sbjct: 622 DQGVMLDNRIYGILIHNLSSSGNMEAA 648



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 145/307 (47%), Gaps = 2/307 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y  L++   +SG ++EAF    DM+      PD +TY  LI    K  R +  + +L EM
Sbjct: 282 YNVLIAGLCRSGAVEEAFGFKKDMEDYG-LVPDGFTYGALINGLCKSRRSNEAKALLDEM 340

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
           S   ++ + V Y  +IDG+ +    +E       MV + G  P+  T ++++      G 
Sbjct: 341 SCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV-AAGVQPNKITYDNLVRGLCKMGQ 399

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++      +      + D  T N++ + + R         ++  M+     P V TY+I
Sbjct: 400 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 459

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I    ++G  EK  +  ++M  +G+KPN+  Y  L+S Y + G +     I  ++   +
Sbjct: 460 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 519

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           V+ D   +N +I    + G VE+  + F  M+ER  +P+  T++ +I  Y   G  E+A+
Sbjct: 520 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 579

Query: 332 NLENKMI 338
            L  +M+
Sbjct: 580 QLVQRML 586



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 150/335 (44%), Gaps = 4/335 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  +PE+AS L E M + GLKP+  VY  L+S Y + G +  A    + M  V +  
Sbjct: 463 GLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKV-NVL 521

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+Y Y+ LI   +K  R +   K  A+M   G+  +  TY+ +I GY K    E  E  
Sbjct: 522 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQL 581

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+++G    D+  ++ ++ +Y  S +IEK+   +      GV  D +   IL  +  
Sbjct: 582 VQRMLDTGLKPNDVIYID-LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLS 640

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            +G  +    V+  ++K    P V  Y+ +I    K    EK      +M  +G+ PN +
Sbjct: 641 SSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIV 700

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y +L+    K+G I    ++   +    ++ +   +  +I    + GD+     L+  M
Sbjct: 701 CYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEM 760

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 PD   ++ +    ++ G  E A  L  +M
Sbjct: 761 LATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 795



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 141/318 (44%), Gaps = 39/318 (12%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  Q ++ASLL + M+ D  +P    Y  ++  + +     +AF  +++M++     
Sbjct: 393 GLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAG-IS 451

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+VYTYSI+I    +    +    +L EM+  G++ +A  Y  +I GY +          
Sbjct: 452 PNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEI 511

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +     PD++  NS+I      G +E+  K++ +                     
Sbjct: 512 FDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFAQ--------------------- 549

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                         MQ+R   P   TY+ +I  + K G +E  E+  ++M   G+KPN +
Sbjct: 550 --------------MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDV 595

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y  L+ +Y K+  I KV S  + + +  V+LD   +  +I     +G++E    +   +
Sbjct: 596 IYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGI 655

Query: 303 KERHCVPDNITFATMIQA 320
           ++   VPD   ++++I  
Sbjct: 656 EKNGSVPDVHVYSSLISG 673



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 127/260 (48%), Gaps = 7/260 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+ S  F+ ML  G+     +Y  L+     SG ++ AF  ++ ++  +   PDV+ YS 
Sbjct: 611 EKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEK-NGSVPDVHVYSS 669

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K    +    IL EMS  G++ + V YN +IDG  K+       + F++++ + 
Sbjct: 670 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL-AK 728

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+  T  S+I      G+I      YNE    G+  D    ++LT     AG    +
Sbjct: 729 GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAG---DL 785

Query: 191 RSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
              M  +++ F     ++ ++N +++ F K G +++  +    +  RG+ PN++T  +++
Sbjct: 786 EQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENII 845

Query: 249 SAYSKAGLIMKVDSILRQVE 268
           S  S+AG + +V +I  +++
Sbjct: 846 SGLSEAGKLSEVHTIFVELQ 865



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/240 (18%), Positives = 112/240 (46%), Gaps = 1/240 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S    + ++D Y K+ + ++  +    M+   G  P I   N+++     +  +  + K 
Sbjct: 173 SPAVLDVLVDTYKKSGRVQD-AAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKV 231

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
                  G+  D+ T + L ++Y +   +D  + V+  M++R      VTYN++I    +
Sbjct: 232 REFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCR 291

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
           +G +E+   + K M+  G+ P+  TY +L++   K+    +  ++L ++  +++  +   
Sbjct: 292 SGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVV 351

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  +I  + + G+ ++  ++   M      P+ IT+  +++    +G  + A  L  +M+
Sbjct: 352 YANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMV 411



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 120/280 (42%), Gaps = 23/280 (8%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +   A  +F  +L+ GL P+   YT+L+    + G +  AF   N+M + +   
Sbjct: 708 GLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLA-TGIT 766

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD + YS+L   C+     +    ++ EM +L    S  ++N ++DG+ K  K +E    
Sbjct: 767 PDAFVYSVLTTGCSSAGDLEQAMFLIEEM-FLRGHASISSFNNLVDGFCKRGKMQETLKL 825

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN------------------L 164
              ++   G  P+  T+ ++IS    +G + ++   + E                    +
Sbjct: 826 LHVIM-GRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMI 884

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
              K  +  ++ + + + + G  DK   + D +  +       +Y  +++   + G + +
Sbjct: 885 NQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSE 944

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
                K+M  RG+ P+      L++    +G I + +++L
Sbjct: 945 ALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQEHNTVL 984



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 2/221 (0%)

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           + S   A+ +SG   P +  L+ ++  Y  SG ++   +        G+   I+  N L 
Sbjct: 159 LASIHRALSDSGHRSPAV--LDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALL 216

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           K   RA     +  V +FM      P V TY+ +IE + K    +  ++   +M+ RG  
Sbjct: 217 KDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCG 276

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            N++TY  L++   ++G + +     + +E+  ++ D   +  +I+   ++    +   L
Sbjct: 277 LNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKAL 336

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              M      P+ + +A +I  +   G  + A  +  +M+A
Sbjct: 337 LDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA 377



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/192 (19%), Positives = 81/192 (42%)

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G  PD++T +++I AY      +  +K   E    G   +  T N+L     R+G  ++
Sbjct: 238 AGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 297

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
                  M+     P   TY  +I    K+    + +    +M    +KPN + Y +L+ 
Sbjct: 298 AFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLID 357

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            + + G   +   +++++  + V  +   ++ ++    + G +++   L   M      P
Sbjct: 358 GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 417

Query: 310 DNITFATMIQAY 321
           D IT+  +I+ +
Sbjct: 418 DTITYNLIIEGH 429


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 151/312 (48%), Gaps = 10/312 (3%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + E M   G+ P+  +Y  ++  Y + G    AF    DM S +  KPD+  Y+IL+ + 
Sbjct: 214 ILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVS-AGLKPDIVIYNILVHAF 272

Query: 76  TKFHRFD----LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
            K  R D    ++E I A      IE    TY +I+DGY K    ++    F   +++ G
Sbjct: 273 CKAGRMDKALGVLENIEANRLLPTIE----TYTSILDGYVKGGNIQKALEVFD-RIKTAG 327

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P + + NS++S    +  +E      NE    GV  + ++   LT+ Y RAG  +K  
Sbjct: 328 LRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAF 387

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +   M+K      +V Y  +++   K+G +++  E F+++   G+K N ITYC+++  +
Sbjct: 388 GMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGW 447

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           ++ G + K   +L  ++     LDT  +   I A  ++GD E++ E    M+E+    + 
Sbjct: 448 ARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNA 507

Query: 312 ITFATMIQAYNA 323
            T+ T+I  + A
Sbjct: 508 RTYTTLIHGWLA 519



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 159/344 (46%), Gaps = 35/344 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A    E MLS G++ +  V+ +++S Y  +G  + A       K+  +  P    Y+ 
Sbjct: 69  EGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKA-ENLVPGGIVYNS 127

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++++  +    + +E +LA+M   G + +   Y T+++G+ + +  E+  S F  +   G
Sbjct: 128 IVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACG 187

Query: 131 --------GCHPDIFT---------------------LNSMISA-----YGNSGNIEKME 156
                   GC   +FT                      N MI A     Y   G+     
Sbjct: 188 LSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAF 247

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           K + +    G+K DI   NIL  ++ +AG  DK   V++ ++     PT+ TY  +++ +
Sbjct: 248 KVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGY 307

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            K G+I+K  E F ++K  G++P  ++Y SL+S  +KA  +     +L ++  + V+ + 
Sbjct: 308 VKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNE 367

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +  +   Y +AGDVEK   +F  MK+ +   D + +  +++A
Sbjct: 368 RSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKA 411



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 146/327 (44%), Gaps = 2/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E    L   M  +G + ++ +YT +++ + +    ++  S  + +K+     P   TY  
Sbjct: 139 ETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACG-LSPTAATYGC 197

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++K  TK         IL EM   G+  + + Y  I+DGY +   F      +  MV S 
Sbjct: 198 IVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMV-SA 256

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PDI   N ++ A+  +G ++K            +   I+T   +   Y + G   K 
Sbjct: 257 GLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKA 316

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V D ++     P VV+YN ++    KA  +E       +M   G+ PN  +Y +L   
Sbjct: 317 LEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEG 376

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y++AG + K   + ++++  ++ +D   +  ++ A  ++G +++  E+F  + +     +
Sbjct: 377 YARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHN 436

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            IT+ TM+  +   G    A++L N M
Sbjct: 437 RITYCTMLDGWARKGELSKARDLLNDM 463



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/327 (20%), Positives = 149/327 (45%), Gaps = 2/327 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A   FE M +  +KP+V +YT+L+ AY ++  ++ A +   +M S    + +   +  +I
Sbjct: 36  ARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLS-QGIQLNEAVFCSII 94

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                    +  E    +     +    + YN+I+  Y +A   E +E+  + M E G  
Sbjct: 95  SGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEG-F 153

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             ++    ++++ +    + EK   +++     G+     T   + K + +AG   K   
Sbjct: 154 QGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALD 213

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +++ M K    P  + Y ++++ + + G      + ++ M   G+KP+ + Y  LV A+ 
Sbjct: 214 ILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFC 273

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           KAG + K   +L  +E + ++     +  I+  Y + G+++K  E+F  +K     P  +
Sbjct: 274 KAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVV 333

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           ++ +++         E A+ + N+M+A
Sbjct: 334 SYNSLLSGLAKARQMENARLMLNEMLA 360



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 138/303 (45%), Gaps = 35/303 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++E M+S GLKP + +Y  LV A+ ++G +D+A   + ++++ +   P + TY+ ++   
Sbjct: 249 VWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEA-NRLLPTIETYTSILDGY 307

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-------EM--------E 120
            K        ++   +   G+    V+YN+++ G  KA++ E       EM        E
Sbjct: 308 VKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNE 367

Query: 121 SSFSAMVE----SGGCHP---------------DIFTLNSMISAYGNSGNIEKMEKWYNE 161
            S++A+ E    +G                   DI    +++ A   SG +++  + + +
Sbjct: 368 RSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAAEVFQQ 427

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G+K +  T   +   + R G   K R +++ MQK  F    + Y   I+   ++G 
Sbjct: 428 ITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGD 487

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            E++ E    M+ + ++ N+ TY +L+  +  A    +  S   Q + S + LD+   NC
Sbjct: 488 TEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNC 547

Query: 282 IIS 284
           ++S
Sbjct: 548 LLS 550



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 2/152 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +Q E A L+   ML++G+ P+   YTAL   Y ++G +++AF     MK   +   
Sbjct: 342 LAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKK-ENLAI 400

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  Y  L+K+C K        ++  +++  G++ + +TY T++DG+ +  +  +     
Sbjct: 401 DIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLL 460

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
           + M +  G H D     S I A   SG+ E++
Sbjct: 461 NDM-QKHGFHLDTICYTSFIKACFRSGDTEEV 491



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%)

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P +  Y ++++ + + G        F+ M+   +KPN   Y SL+ AY++A  +    + 
Sbjct: 15  PVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVAC 74

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             ++ +  + L+   F  IIS Y  AG+ E     F   K  + VP  I + +++QAY  
Sbjct: 75  TEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQ 134

Query: 324 LGMTEAAQNLENKM 337
            G  E  + L  +M
Sbjct: 135 AGNMETVEALLAQM 148



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 2/149 (1%)

Query: 158 WYNEFNLMGV--KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           W+   N   V  K  ++   +L   Y R G     R+  + M+     P V  Y  +I  
Sbjct: 2   WHKIVNAFQVIDKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHA 61

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           + +A  +E      ++M  +G++ N   +CS++S Y+ AG     +    + +  +++  
Sbjct: 62  YAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPG 121

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKE 304
              +N I+ AY QAG++E +  L   M+E
Sbjct: 122 GIVYNSIVQAYCQAGNMETVEALLAQMEE 150


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 133/264 (50%), Gaps = 2/264 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ KQ    + L + M+ DG +P+   Y  L+ +YG++  L+EA +  N M+  + CKP
Sbjct: 374 LGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQE-AGCKP 432

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY  LI    K    D+   +   M   G+     TY+ II+  GKA         F
Sbjct: 433 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 492

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+  GC P++ T N M+  +  + N +   K Y +    G + D  T +I+ +  G 
Sbjct: 493 CEMVDQ-GCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGH 551

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  ++  +V   MQ++ + P    Y ++++ +GKAG++EK  ++++ M H G+ PN  T
Sbjct: 552 CGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLLPNVPT 611

Query: 244 YCSLVSAYSKAGLIMKVDSILRQV 267
             SL+S + +   I +   +L+ +
Sbjct: 612 CNSLLSTFLRVNKIAEAYELLQNM 635



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 138/279 (49%), Gaps = 1/279 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           K D +TY+ ++ +  +  +F  I K+L EM   G + + VTYN +I  YG+A    E  +
Sbjct: 361 KHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMN 420

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F+ M E+G C PD  T  ++I  +  +G ++     Y      G+  D  T +++    
Sbjct: 421 VFNQMQEAG-CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL 479

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+AG       +   M  +   P +VTYNI+++   KA + +   + ++ M++ G +P+ 
Sbjct: 480 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDK 539

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  ++      G + + +++  +++  + I D P +  ++  +G+AG+VEK  + +  
Sbjct: 540 VTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 599

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           M     +P+  T  +++  +  +     A  L   M+A+
Sbjct: 600 MLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLAL 638



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 135/282 (47%), Gaps = 8/282 (2%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD-CKPDVYTYSILIKSCTKFHR 80
           G K     YT +V   G++    + F  IN +  + V D C+P+  TY+ LI S  + + 
Sbjct: 359 GFKHDGHTYTTMVGNLGRA----KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANY 414

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            +    +  +M   G +   VTY T+ID + KA  F ++       +++GG  PD FT +
Sbjct: 415 LNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG-FLDIAMDMYQRMQAGGLSPDTFTYS 473

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I+  G +G++    K + E    G   ++ T NI+   + +A  Y     +   MQ  
Sbjct: 474 VIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNA 533

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
            F P  VTY+IV+E  G  G++E+ E  F +M+ +   P+   Y  LV  + KAG + K 
Sbjct: 534 GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 593

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
               + + ++ ++ + P  N ++S + +   + +  EL   M
Sbjct: 594 WQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 1/244 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G +    TY T++   G+AK+F  +      MV  G C P+  T N +I +YG +  + +
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNE 417

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               +N+    G K D  T   L   + +AG  D    +   MQ     P   TY+++I 
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
             GKAGH+    + F +M  +G  PN +TY  ++  ++KA        + R ++N+    
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEP 537

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           D   ++ ++   G  G +E+   +F  M++++ +PD   +  ++  +   G  E A    
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597

Query: 335 NKMI 338
             M+
Sbjct: 598 QAML 601



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 95/191 (49%), Gaps = 2/191 (1%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G   D +  N ++    + GN      W       G K D  T   +  + GRA  +  +
Sbjct: 326 GLRIDAYQANQVLKQMNDYGNALGFFYWLKR--QPGFKHDGHTYTTMVGNLGRAKQFGAI 383

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++D M +    P  VTYN +I ++G+A ++ +    F +M+  G KP+ +TYC+L+  
Sbjct: 384 NKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDI 443

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           ++KAG +     + ++++   +  DT  ++ II+  G+AG +    +LF  M ++ C P+
Sbjct: 444 HAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPN 503

Query: 311 NITFATMIQAY 321
            +T+  M+  +
Sbjct: 504 LVTYNIMMDLH 514



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 115/263 (43%), Gaps = 9/263 (3%)

Query: 78  FHRFDLIEKILAEMSYLGIECSAVTYNTII---DGYGKAKKFEEMESSFSAMVESGGCHP 134
             RF         +  LG+   A   N ++   + YG A  F      F  +    G   
Sbjct: 309 LRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGF------FYWLKRQPGFKH 362

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D  T  +M+   G +     + K  +E    G + +  T N L  SYGRA   ++  +V 
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 422

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + MQ+    P  VTY  +I+   KAG ++   + +++M+  G+ P++ TY  +++   KA
Sbjct: 423 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 482

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G +     +  ++ +     +   +N ++  + +A + +   +L+  M+     PD +T+
Sbjct: 483 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTY 542

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
           + +++     G  E A+ +  +M
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEM 565



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%)

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           +  G K +  TY ++V    +A     ++ +L ++       +T  +N +I +YG+A  +
Sbjct: 356 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +   +F  M+E  C PD +T+ T+I  +   G  + A ++  +M A
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQA 462



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 117/292 (40%), Gaps = 21/292 (7%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E+A  +F  M      P   VY  LV  +G++G +++A+     M   + 
Sbjct: 546 MEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLH-AG 604

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+V T + L+ +  + ++     ++L  M  LG+  S  TY  ++      +   +M 
Sbjct: 605 LLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMG 664

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNIL 177
                M  +G  HP    L  M +A  N  N+       N  +LM     ++    ++ +
Sbjct: 665 YCGQLMASTG--HPAHMFLLKMPAAGPNGENVRNHAN--NFLDLMHSEDRESKRGLVDAV 720

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPT----------VVTYNIVIETFGKAGHIEKMEE 227
                ++G  ++  SV +   ++  FP           ++  +++ E          +  
Sbjct: 721 VDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAW 780

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           + ++M   G  P+ I    +V+ + +   +     + + VE    I  +PFF
Sbjct: 781 FRRQMLVSGTCPSRI---DIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFF 829


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 165/327 (50%), Gaps = 12/327 (3%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  M  +G  P+V  Y  L+ AY + G +DEAF  +  M S    +P++ +Y+++I    
Sbjct: 237 FGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSS-KGMQPNLISYNVIINGLC 295

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           +        +IL EM Y G     VTYNT+++GY K   F +     + MV +G   P +
Sbjct: 296 REGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNG-VSPSV 354

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            T  ++I++   + N+ +  +++++  + G++ + +T   L   + R G+ ++   +++ 
Sbjct: 355 VTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNE 414

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGH--IEKMEEYF---KKMKHRGMKPNSITYCSLVSAY 251
           M +  F P+VVTYN  I      GH  +E+MEE     ++M  +G+ P+ ++Y +++S +
Sbjct: 415 MTESGFSPSVVTYNAFIH-----GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGF 469

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + G + +   + +++    V  D   ++ +I    +   + +  +L   M +    PD 
Sbjct: 470 CRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 529

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
            T+ T+I AY   G    A +L ++MI
Sbjct: 530 FTYTTLINAYCVEGDLNKALHLHDEMI 556



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 152/329 (46%), Gaps = 2/329 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVSDCKPDVYTYS 69
           +QA     +  S G  P V  Y +++ A  +S G +  +   +      S   P+VYTY+
Sbjct: 159 DQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYN 218

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           ILI+                EM   G   + VTYNT+ID Y K  + +E      +M  S
Sbjct: 219 ILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSM-SS 277

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G  P++ + N +I+     G++++  +   E    G   D  T N L   Y + G + +
Sbjct: 278 KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQ 337

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              +   M +    P+VVTY  +I +  KA ++ +  E+F +M+ RG++PN  TY +L+ 
Sbjct: 338 ALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLID 397

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            +S+ GL+ +   IL ++  S        +N  I  +     +E+   +   M E+   P
Sbjct: 398 GFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAP 457

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMI 338
           D ++++T+I  +   G  + A  ++ +M+
Sbjct: 458 DVVSYSTIISGFCRKGELDRAFQMKQEMV 486



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 143/338 (42%), Gaps = 17/338 (5%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K +   +A   F+ M   GL+P+   YT L+  + + GLL+EA+  +N+M   S   P V
Sbjct: 366 KARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTE-SGFSPSV 424

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+  I       R +    ++ EM   G+    V+Y+TII G+ +  + +        
Sbjct: 425 VTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQE 484

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           MVE G   PD  T +S+I        + +      E   MG+  D  T   L  +Y   G
Sbjct: 485 MVEKG-VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEG 543

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY- 244
             +K   + D M  + F P  VTY+++I    K     + +    K+ +    P+ +TY 
Sbjct: 544 DLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYD 603

Query: 245 -----CS---------LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
                CS         L+  +   GL+ + D +   +   +       +N II  + + G
Sbjct: 604 TLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGG 663

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
           ++ K   L+  M     VP  +T  T+I+A    GM E
Sbjct: 664 NLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNE 701



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 37/202 (18%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV-------------------------- 207
            +++ KSY    M D+  + ++  +   F P V+                          
Sbjct: 145 FDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYRE 204

Query: 208 -----------TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
                      TYNI+I  F   G ++K    F +M+  G  PN +TY +L+ AY K G 
Sbjct: 205 MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 264

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           I +   +L+ + +  +  +   +N II+   + G +++  E+   M  +   PD +T+ T
Sbjct: 265 IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 324

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           ++  Y   G    A  +  +M+
Sbjct: 325 LLNGYCKEGNFHQALVIHAEMV 346


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 138/279 (49%), Gaps = 7/279 (2%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           KP+V +Y+ +I   +     +   +IL  M   GIE  + TY ++I G  K  + EE   
Sbjct: 205 KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 264

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  MVE G   P+  T N++I  Y N G++E+   + +E    G+   + T N+L  + 
Sbjct: 265 LFDKMVEIG-LVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHAL 323

Query: 182 ---GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
              GR G  D M   +  M+K+   P  +TYNI+I  + + G+ ++  +   +M  +G++
Sbjct: 324 FMEGRMGEADDM---IKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIE 380

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P  +TY SL+   S+   + + D +  ++ +  V  D   FN +I  +   G+VE+   L
Sbjct: 381 PTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFML 440

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              M  +   PD +TF T++Q     G  E A+ L ++M
Sbjct: 441 LKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEM 479



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 157/332 (47%), Gaps = 6/332 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G KP+V  Y  ++  Y   G ++ A   ++ M+ V   +PD YTY  LI    K  R + 
Sbjct: 203 GFKPNVVSYNTIIHGYSSRGNIEGARRILDAMR-VKGIEPDSYTYGSLISGMCKEGRLEE 261

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +  +M  +G+  +AVTYNT+IDGY      E   S    MV+ G   P + T N ++
Sbjct: 262 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKG-IMPSVSTYNLLV 320

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A    G + + +    E    G+  D  T NIL   Y R G   +   + + M  +   
Sbjct: 321 HALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIE 380

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT VTY  +I    +   +++ ++ F+K+  +G+ P+ I + +++  +   G + +   +
Sbjct: 381 PTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFML 440

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L++++   V  D   FN ++    + G VE+   L   MK R   PD+I++ T+I  Y  
Sbjct: 441 LKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGR 500

Query: 324 LGMTEAAQNLENKMIAMKENSG----KKLIQC 351
            G  + A  + ++M+++  N        LI+C
Sbjct: 501 RGDIKDAFXVRDEMLSIGFNPTLLTYNALIKC 532



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 152/325 (46%), Gaps = 18/325 (5%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E+AS LF+ M+  GL P+   Y  L+  Y   G L+ AFS  ++M       
Sbjct: 252 GMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK-KGIM 310

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEM 119
           P V TY++L+ +     R    + ++ EM   GI   A+TYN +I+GY   G AK+  ++
Sbjct: 311 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDL 370

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            +     + S G  P   T  S+I        +++ +  + +    GV  D+   N +  
Sbjct: 371 HNE----MLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMID 426

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +   G  ++   ++  M ++   P  VT+N +++   + G +E+      +MK RG+KP
Sbjct: 427 GHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKP 486

Query: 240 NSITYCSLVSAYSKAGLIMKV----DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           + I+Y +L+S Y + G I       D +L    N  ++       C+     Q GD+ + 
Sbjct: 487 DHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCK--NQEGDLAE- 543

Query: 296 GELFLTMKERHCVPDNITFATMIQA 320
            EL   M  +   PD+ T+ ++I+ 
Sbjct: 544 -ELLKEMVNKGISPDDSTYLSLIEG 567



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 109/228 (47%), Gaps = 4/228 (1%)

Query: 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
           GK KK  E    F   +E  G  P++ + N++I  Y + GNIE   +  +   + G++ D
Sbjct: 187 GKLKKARE----FIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPD 242

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
             T   L     + G  ++   + D M +    P  VTYN +I+ +   G +E+   Y  
Sbjct: 243 SYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRD 302

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           +M  +G+ P+  TY  LV A    G + + D +++++    +I D   +N +I+ Y + G
Sbjct: 303 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 362

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + ++  +L   M  +   P ++T+ ++I   +     + A +L  K++
Sbjct: 363 NAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 410



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 91/190 (47%)

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G ++K  ++      +G K ++ + N +   Y   G  +  R ++D M+ +   P   TY
Sbjct: 187 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY 246

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
             +I    K G +E+    F KM   G+ PN++TY +L+  Y   G + +  S   ++  
Sbjct: 247 GSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK 306

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
             ++     +N ++ A    G + +  ++   M+++  +PD IT+  +I  Y+  G  + 
Sbjct: 307 KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKR 366

Query: 330 AQNLENKMIA 339
           A +L N+M++
Sbjct: 367 AFDLHNEMLS 376



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G+C++   E+A +L + M   G+KP    Y  L+S YG+ G + +AF   ++M S+ 
Sbjct: 459 LMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIG 518

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P + TY+ LIK   K    DL E++L EM   GI     TY ++I+G G      E 
Sbjct: 519 -FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVED 577

Query: 120 ESS 122
            +S
Sbjct: 578 NAS 580



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 2/180 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L +  + ++A  LFE +L  G+ P V ++ A++  +  +G ++ AF  + +M   S   
Sbjct: 392 VLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKS-VP 450

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  T++ L++   +  + +    +L EM   GI+   ++YNT+I GYG+    ++    
Sbjct: 451 PDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXV 510

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+ S G +P + T N++I     +   +  E+   E    G+  D  T   L +  G
Sbjct: 511 RDEML-SIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMG 569


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 162/336 (48%), Gaps = 8/336 (2%)

Query: 7   CKQPEQASLLFEVMLSD----GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           CK  +  +++F   LSD    G+   +  Y  L++AY + GL++EAF  +N   S    +
Sbjct: 268 CKDRKFENVMF--FLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSS-RGME 324

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P + TY+ ++    K  ++D  + +L EM  LG+  +A TYNT++    +     E +  
Sbjct: 325 PGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEI 384

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M   G   PD+ + +S+I     +G++ +    + E    G+  D     IL   + 
Sbjct: 385 FDEMSRRG-VLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFC 443

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G       + D M  R  F  VVTYN  +    K       +  F +M  RGM P+  
Sbjct: 444 RNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFY 503

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+ +L+  Y K G + K  ++   +  +++  D   +N +I  + +AG++ +  EL+  M
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +  +PD+I++ T++  + + G+   A NL ++M+
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQML 599



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 160/332 (48%), Gaps = 2/332 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F+ M   G+ P +  +++L+    ++G L +A     +M+  S   PD   Y+IL
Sbjct: 380 EAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMER-SGIVPDNVIYTIL 438

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    +        K+  EM   G     VTYNT ++G  K K F + +  F+ MVE G 
Sbjct: 439 IDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGM 498

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD +T  ++I  Y   GN++K    +       +K D  T N L   + +AG   + +
Sbjct: 499 V-PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAK 557

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + D M ++   P  ++Y  V+  F  +G + +      +M  +G++PN +T  +L+  Y
Sbjct: 558 ELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGY 617

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            ++G + K    L ++ ++ +I D+  +N +I  Y +  ++EK   L   M++R    + 
Sbjct: 618 CRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNI 677

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           IT+  ++  + A G  + A+ +  KMI +  N
Sbjct: 678 ITYNLILNGFCAEGKMQEAEQVLRKMIEIGIN 709



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 148/349 (42%), Gaps = 49/349 (14%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMK------SVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           +Y  LV  Y Q+  L E       ++      S++ C         L+    +    DL 
Sbjct: 189 IYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNK-------LLGGLVRTGWVDLA 241

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            +I  E+   GIE +  T N +++   K +KFE +    S M E  G   DI T N++I+
Sbjct: 242 WEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDM-EGKGVFADIVTYNTLIN 300

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           AY   G +E+  +  N F+  G++  + T N +     + G YD+ + V+  M +    P
Sbjct: 301 AYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTP 360

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
              TYN ++    +  +I + +E F +M  RG+ P+ +++ SL+   ++ G + +     
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHF 420

Query: 265 RQVENSDVILDTPFFNCIISAY---GQAGDVEKMGE------------------------ 297
           R++E S ++ D   +  +I  +   G   D  KM +                        
Sbjct: 421 REMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKK 480

Query: 298 --------LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                   LF  M ER  VPD  TF T+I+ Y   G  + A NL   M+
Sbjct: 481 KMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMV 529



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 123/249 (49%), Gaps = 4/249 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+     A +LF  M+  G+ P    +T L+  Y + G +D+A +    M   ++ K
Sbjct: 476 GLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVR-TNLK 534

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY+ LI    K       +++  +M    I    ++Y T+++G+  +    E  + 
Sbjct: 535 PDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNL 594

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+E  G  P++ T N++I  Y  SG++ K  ++ ++    G+  D  + N L   Y 
Sbjct: 595 CDQMLEK-GIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYL 653

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    +K   +++ M+KR     ++TYN+++  F   G +++ E+  +KM   G+ P+  
Sbjct: 654 KEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGA 713

Query: 243 TYCSLVSAY 251
           TY SL++ +
Sbjct: 714 TYSSLINGH 722



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 146/335 (43%), Gaps = 37/335 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA + F  M   G+ P   +YT L+  + ++G L +A    ++M +   C  DV TY+  
Sbjct: 415 QALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLA-RGCFMDVVTYNTF 473

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    K   F   + +  EM   G+     T+ T+I GY K    ++  + F AMV +  
Sbjct: 474 LNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTN- 532

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNE-----------------------------F 162
             PD  T N++I  +  +G + + ++ +++                              
Sbjct: 533 LKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEAL 592

Query: 163 NLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           NL       G++ ++ T N L K Y R+G   K    +  M      P   +YN +I+ +
Sbjct: 593 NLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGY 652

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            K  ++EK      +M+ RG++ N ITY  +++ +   G + + + +LR++    +  D 
Sbjct: 653 LKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDG 712

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
             ++ +I+ +    ++++       M +R  VPD+
Sbjct: 713 ATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDD 747



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 124/294 (42%), Gaps = 36/294 (12%)

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM------------- 126
           R  ++E +++   Y G     + Y+ ++  Y +AKK  E   +F  +             
Sbjct: 169 RVKVVESLISTCFYFG--SVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACN 226

Query: 127 ---------------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
                                V  GG   +++TLN M++A       E +  + ++    
Sbjct: 227 KLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGK 286

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           GV ADI T N L  +Y R G+ ++   +++    R   P ++TYN ++    K G  ++ 
Sbjct: 287 GVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRA 346

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           ++   +M   G+ PN+ TY +L+    +   I++   I  ++    V+ D   F+ +I  
Sbjct: 347 KDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGV 406

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             + G + +    F  M+    VPDN+ +  +I  +   G    A  + ++M+A
Sbjct: 407 LARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLA 460



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+S+G+ P    Y  L+  Y +   L++AF  IN+M+     + ++ TY++++       
Sbjct: 633 MISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEK-RGLQFNIITYNLILNGFCAEG 691

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           +    E++L +M  +GI     TY+++I+G+      +E       M++ G    D F
Sbjct: 692 KMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDRF 749


>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
 gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
          Length = 481

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 140/277 (50%), Gaps = 1/277 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEME 120
           +P+  TY+ +I       R     +++ EM   G I     TY T+I G+ K  + E+  
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAA 203

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M+  G   P     N++I  Y + G ++   ++  +    GV   + T N+L  +
Sbjct: 204 KVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHA 263

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               G      +V++ MQ+    P V TYNI+I  + K G+ +K  E F++M  +G++  
Sbjct: 264 LFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRAT 323

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           ++TY SL+ A+S+ G + + D + +      +  D   +N +I+++   GD+E+  E+  
Sbjct: 324 AVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMA 383

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M+++   PD++T+ T+I+ +  LG  + A+ L ++M
Sbjct: 384 EMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEM 420



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 126/286 (44%), Gaps = 2/286 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P+   Y  +++ +   G +  A   + +M+      PD YTY+ LI    K  R +   
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAA 203

Query: 86  KILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           K+  EM   G +  SAV YN +I GY    K +        MV+ G     + T N ++ 
Sbjct: 204 KVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAM-TVATYNLLVH 262

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A    G          E    G+  D+ T NIL   Y + G   K   V + M ++    
Sbjct: 263 ALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRA 322

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           T VTY  +I  F + G +++ +  FK    +G++P+ + Y +L++++   G + +   I+
Sbjct: 323 TAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIM 382

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            ++E   +  D   +N +I  +   G +++   L   M +R   PD
Sbjct: 383 AEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPD 428



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 12/232 (5%)

Query: 18  EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CT 76
           E M+  G+  +V  Y  LV A    G   +A++ + +M+  +   PDV+TY+ILI   C 
Sbjct: 243 EDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQR-NGLSPDVFTYNILINGYCK 301

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           + +    +E +  EMS  G+  +AVTY ++I  + +  + +E +  F   V+ G   PD+
Sbjct: 302 EGNEKKALE-VFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKG-IRPDV 359

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
              N++I+++   G++E+  +   E     +  D  T N L + +   G  D+ R ++D 
Sbjct: 360 VMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDE 419

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           M KR   P +           K G  +  E   K+M  +G+ P+  TY SL+
Sbjct: 420 MTKRGIQPDL--------GLCKNGQGDDAENLMKEMVGKGITPDDSTYISLI 463



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q ++   LF+V +  G++P V +Y AL++++   G ++ AF  + +M+      PD  TY
Sbjct: 339 QVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEK-KRIPPDDVTY 397

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIE 97
           + LI+      R D    ++ EM+  GI+
Sbjct: 398 NTLIRGFCLLGRLDEARGLIDEMTKRGIQ 426


>gi|357138098|ref|XP_003570635.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Brachypodium distachyon]
          Length = 519

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 155/323 (47%), Gaps = 5/323 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G KP   VY +L+ A+     +S  L +A    + MK++
Sbjct: 121 VMGKKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALAKALGYFDKMKTI 180

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P++ TY+IL+++C +      +E +  ++    +     TYN +IDGYGK    +E
Sbjct: 181 ERCQPNIVTYNILLRACARASDAKQVEILFKDLDESLVTPDIYTYNGVIDGYGKNGMIKE 240

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           MES    M +S  C PD+ T N +I +YG     +KME+ +        +    T N + 
Sbjct: 241 MESVLVRM-KSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKERPTHPTFNSMI 299

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A + +K  SV++ M +  F P+ VT   +I  +     + K ++ F ++ +    
Sbjct: 300 TNYGKARLKEKAESVLEKMDELGFKPSYVTQECLIMMYAYCDCVSKAQQIFDELVNSQST 359

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
               +  +++ AY    L M+ D +L       V+     +  +  AY +A D   + +L
Sbjct: 360 VPLSSLNAMLDAYCMNRLPMEADRLLDAAIEKGVVPGASTYKLLYKAYTRANDKVLVQKL 419

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
              M ++  VP+   F   ++A+
Sbjct: 420 LGRMNKQGIVPNKKFFLDALEAF 442



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 6/241 (2%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNE 161
           Y+ +I   GK  +       FS M  SG C PD    NS+I A+ +S +  K + K    
Sbjct: 115 YSKLISVMGKKGQIRMAMWLFSQMRNSG-CKPDTSVYNSLIGAHLHSRDKSKALAKALGY 173

Query: 162 FNLMGV----KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
           F+ M      + +I T NIL ++  RA    ++  +   + +    P + TYN VI+ +G
Sbjct: 174 FDKMKTIERCQPNIVTYNILLRACARASDAKQVEILFKDLDESLVTPDIYTYNGVIDGYG 233

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           K G I++ME    +MK +  +P+ IT+  L+ +Y +  +  K++ + + +  S      P
Sbjct: 234 KNGMIKEMESVLVRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKERPTHP 293

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            FN +I+ YG+A   EK   +   M E    P  +T   +I  Y        AQ + +++
Sbjct: 294 TFNSMITNYGKARLKEKAESVLEKMDELGFKPSYVTQECLIMMYAYCDCVSKAQQIFDEL 353

Query: 338 I 338
           +
Sbjct: 354 V 354



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 5/145 (3%)

Query: 204 PTVVTYNIVI----ETFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIM 258
           P    YN +I     +  K+  + K   YF KMK     +PN +TY  L+ A ++A    
Sbjct: 145 PDTSVYNSLIGAHLHSRDKSKALAKALGYFDKMKTIERCQPNIVTYNILLRACARASDAK 204

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +V+ + + ++ S V  D   +N +I  YG+ G +++M  + + MK + C PD ITF  +I
Sbjct: 205 QVEILFKDLDESLVTPDIYTYNGVIDGYGKNGMIKEMESVLVRMKSKQCRPDVITFNILI 264

Query: 319 QAYNALGMTEAAQNLENKMIAMKEN 343
            +Y    + +  + +   ++  KE 
Sbjct: 265 DSYGRKQIFDKMEQVFKSLLRSKER 289


>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 426

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 153/341 (44%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
            L P    Y+ L++ +G+ GL D+A S +  M+     + D+  YS LI+   K   +  
Sbjct: 4   ALSPDRYTYSTLITYFGKEGLFDDALSWLQKMEQ-DRVRGDLVLYSNLIELSRKLCDYSK 62

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------- 130
              I + +   GI    V YN++I+ +GKAK F E  S  S M  +G             
Sbjct: 63  AISIFSRLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLT 122

Query: 131 ---------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
                                 C  D+ T N MI  YG  G  ++ +K +     +G++ 
Sbjct: 123 MYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M+ RG++PN+ITY +++S + K G + +   +  ++ +S + +D   +  +I AY +A
Sbjct: 243 QEMQSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYERA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     PDNI   T I      G  E A
Sbjct: 303 GLVSHAKRLLHELK----TPDNIPRDTAIHILARAGRIEEA 339



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 163/356 (45%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P + VY ++++ +G++ L  EA S I++M++ +   PD  +Y+ L+   
Sbjct: 66  IFSRLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRT-AGVMPDTVSYTALLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F +M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSM-RKLGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + + Y +++ AY 
Sbjct: 241 LIQEMQSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYE 300

Query: 253 KAGLIMKVDSILRQVENSDVIL-------------------------------DTPFFNC 281
           +AGL+     +L +++  D I                                D   F  
Sbjct: 301 RAGLVSHAKRLLHELKTPDNIPRDTAIHILARAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+      D+   A ++ AY  L   E A ++  +M
Sbjct: 361 MIDLFSKYKKYSNIVEVFDKMRGLEYFSDSYVIALVLNAYGKLHEFEKANDVYTEM 416



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   NSMI+ +G +    +     +E    GV  D  +   L   Y 
Sbjct: 67  FSRLKRSG-IMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  D+  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P+ IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QSRGIEPNAITYSTIISIWGKVGKLDRAAILFEKL 280



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           + R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RDRALSPDRYTYSTLITYFGKEGLFDDALSWLQKMEQDRVRGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G+ P+ + Y S+++ + KA L  +  S++ ++  + V+ DT  +  +
Sbjct: 61  SKAISIFSRLKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTAL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 608

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 166/336 (49%), Gaps = 2/336 (0%)

Query: 2   VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           +++GK K P +A+L+F+ ++ DG +P++  YT LV+A  +    +  F  I+ ++  +  
Sbjct: 67  ILIGKGK-PHEANLIFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEE-NGM 124

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           KPD   Y+ +I + ++        KI  +M   G + +  T+NT+I GYG A K EE   
Sbjct: 125 KPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLK 184

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               M   G   P+  T N ++ A+ +  NIE+     ++    G++ D+ T NIL ++Y
Sbjct: 185 MLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAY 244

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G   +   ++  MQ     P   T  I++  + K G++ +   +  +MK  G+ PN 
Sbjct: 245 AQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNL 304

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           + + SL+  +        VD  L  +E   V  D   F+ I++A+  AG ++K  E+F  
Sbjct: 305 VIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFND 364

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M +    PD   F+ + + Y   G TE A+++   M
Sbjct: 365 MAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSM 400



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 5/336 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K  E   LL   +  +G+KP   +Y A+++A+ +SG + EA      MK  + CKP
Sbjct: 103 LTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKD-TGCKP 161

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESS 122
              T++ LIK      + +   K+L  MS  G ++ +  TYN ++  +   K  EE  + 
Sbjct: 162 TTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNV 221

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              MV SG   PD+ T N +  AY   G   + E    E     V  + +T  I+   Y 
Sbjct: 222 LHKMVASG-IQPDVVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYC 280

Query: 183 RAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           + G M + +R V   M++    P +V +N +I+ F      + ++E    M+  G+KP+ 
Sbjct: 281 KEGNMIEALRFVYR-MKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDV 339

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           IT+ ++++A+S AGL+ K   I   +  + +  D   F+ +   Y +AG+ E    +  +
Sbjct: 340 ITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTS 399

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M +    P+ +   T+I  + + G  E A+ +  KM
Sbjct: 400 MAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKM 435



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 155/330 (46%), Gaps = 3/330 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           G   +PE+   +  +M  DG +KP+   Y  LV A+     ++EA++ ++ M + S  +P
Sbjct: 174 GNAGKPEEGLKMLHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVA-SGIQP 232

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TY+IL ++  +       E ++ EM Y  +  +  T   I++GY K     E    F
Sbjct: 233 DVVTYNILARAYAQKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEA-LRF 291

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              ++  G HP++   NS+I  + +  + + +++        GVK D+ T + +  ++  
Sbjct: 292 VYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSS 351

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG+ DK + + + M K    P +  ++I+ + + +AG  E  E     M   G++PN + 
Sbjct: 352 AGLMDKCQEIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVI 411

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
             +++S +  AG +     +  ++    +  +   F  +I  Y +A    K  EL   M+
Sbjct: 412 CTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKAEELLQLME 471

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           E+   P+  T   +  A+  +G+   A+ +
Sbjct: 472 EKGVFPEKSTIQLVADAWRNIGLLCEAKRI 501


>gi|255661194|gb|ACU25766.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 426

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 57
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 58  --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                    S   PD+  Y+ +I    K   F     ++ EM   G+    V+Y T++  
Sbjct: 64  ISIFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTM 123

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           + + K+F E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     +G++ 
Sbjct: 124 HVENKRFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M++RG++PNSITY +++S + K G + +   + +++ NS V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     PDNI   T I    A G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDTAIHILAAAGRLEEA 339



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 169/358 (47%), Gaps = 43/358 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y ++++ + ++ L  EA S IN+M++ +   PD  +Y+ L+   
Sbjct: 66  IFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRT-AGVMPDTVSYTTLLTMH 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  RF     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKIGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  + K G +++    F+K+++ G++ + + Y +++ AY 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYE 300

Query: 253 KAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQ-------------AGDVEKMG-- 296
           +AGL+     +L +++  D I  DT     I++A G+             AG+V+ +   
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDTAIH--ILAAAGRLEEATWVFRQAIDAGEVKDITVF 358

Query: 297 -----------------ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                            E+F  M+ER   PD+   A ++ AY  L   E A ++  +M
Sbjct: 359 ERLIHLFSKYKKYSNVVEVFDKMRERRYFPDSNVIALVLNAYGKLHEFEKANSVYMEM 416



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 134/289 (46%), Gaps = 5/289 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   NSMI+ +  +    +     NE    GV  D  +   L   + 
Sbjct: 67  FSRLKRSGFA-PDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
           + R   P++IT++T+I  +  +G  + A  L  K+     NSG ++ Q 
Sbjct: 246 QNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKL----RNSGVEIDQV 290



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 103/263 (39%), Gaps = 33/263 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 160 GQLGMAKEADKLFWGMRKIGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 218

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  + K  K +     F 
Sbjct: 219 VVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQ 278

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-------------------- 164
            +  SG    D     +MI AY  +G +   ++  +E                       
Sbjct: 279 KLRNSG-VEIDQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAAAGRLE 337

Query: 165 -----------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                       G   DI     L   + +   Y  +  V D M++R +FP      +V+
Sbjct: 338 EATWVFRQAIDAGEVKDITVFERLIHLFSKYKKYSNVVEVFDKMRERRYFPDSNVIALVL 397

Query: 214 ETFGKAGHIEKMEEYFKKMKHRG 236
             +GK    EK    + +M+  G
Sbjct: 398 NAYGKLHEFEKANSVYMEMQDEG 420



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y S+++ + KA L  +  S++ ++  + V+ DT  +  +
Sbjct: 61  SKAISIFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ + +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMHVENKRFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 50/105 (47%)

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           + R + P+  TY +L++ + K GL     S L+++E   V  D   ++ +I    +  D 
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            K   +F  +K     PD + + +MI  +    +   A++L N+M
Sbjct: 61  SKAISIFSRLKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEM 105


>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
 gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic-like [Cucumis sativus]
          Length = 680

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 162/359 (45%), Gaps = 39/359 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + KQ E A  LF+ M    L      Y+ L++ +G+ G+ D A S +  M+       D+
Sbjct: 171 RAKQWELAHGLFDEMRQRALAADRYTYSTLITYFGKEGMFDAALSWLQKMEQ-DRVSGDL 229

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME----- 120
             YS LI+   K   +     I + +   GI    V YNT+I+ +GKAK F E       
Sbjct: 230 VLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIVAYNTMINVFGKAKLFREARFLLKE 289

Query: 121 ----------SSFSAMV-------------------ESGGCHPDIFTLNSMISAYGNSGN 151
                      S+S ++                   +   C  D+ T N MI  YG    
Sbjct: 290 MRAVDVMPDTVSYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLTTCNIMIDVYGQLDM 349

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++ ++ +     +G++ ++ + N + + YG A ++ +   +   MQ++     VVTYN 
Sbjct: 350 VKEADRLFWRMRKIGIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNT 409

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ +GK    EK     + M+ RG++PN+ITY +++S + KAG + +   + +++ +S 
Sbjct: 410 MIKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQKLRSSG 469

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
             +D   +  +I AY +AG V     L   +K+    PDNI   T I      G  E A
Sbjct: 470 AEIDQVLYQTMIVAYEKAGLVGHAKRLLHELKQ----PDNIPRTTAITILAKAGRIEEA 524



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 161/352 (45%), Gaps = 39/352 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P +  Y  +++ +G++ L  EA   + +M++V D  PD  +YS L+   
Sbjct: 251 IFSRLKRSGITPDIVAYNTMINVFGKAKLFREARFLLKEMRAV-DVMPDTVSYSTLLNMF 309

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     +++EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 310 VENEKFLEALSVISEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWRM-RKIGIEPN 368

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG +   E   +  + F LM    +K ++ T N + K YG+   ++K  +
Sbjct: 369 VVSYNTILRVYGEA---ELFGEAIHLFRLMQRKEIKQNVVTYNTMIKIYGKTLEHEKATN 425

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQKR   P  +TY+ +I  +GKAG +++    F+K++  G + + + Y +++ AY 
Sbjct: 426 LVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAYE 485

Query: 253 KAGLIMKVDSILRQVENSDVIL-------------------------------DTPFFNC 281
           KAGL+     +L +++  D I                                D   F C
Sbjct: 486 KAGLVGHAKRLLHELKQPDNIPRTTAITILAKAGRIEEATWVFRQAFDAGELKDISVFEC 545

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +I  + +    + + E+F  M+     P++   A ++ AY  L   + A  L
Sbjct: 546 MIDLFSRNKKHKNVLEVFEKMRNVGHFPNSDVIALVLNAYGKLRDFDTADAL 597



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/310 (20%), Positives = 135/310 (43%), Gaps = 36/310 (11%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P VY Y++++++  +  +++L   +  EM    +     TY+T+I  +GK   F+   S 
Sbjct: 157 PSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTYSTLITYFGKEGMFDAALSW 216

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E      D+   +++I       +  K    ++     G+  DI   N +   +G
Sbjct: 217 LQKM-EQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGITPDIVAYNTMINVFG 275

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTY--------------------------------- 209
           +A ++ + R ++  M+     P  V+Y                                 
Sbjct: 276 KAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVENEKFLEALSVISEMKEVNCPLDLT 335

Query: 210 --NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
             NI+I+ +G+   +++ +  F +M+  G++PN ++Y +++  Y +A L  +   + R +
Sbjct: 336 TCNIMIDVYGQLDMVKEADRLFWRMRKIGIEPNVVSYNTILRVYGEAELFGEAIHLFRLM 395

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           +  ++  +   +N +I  YG+  + EK   L   M++R   P+ IT++T+I  +   G  
Sbjct: 396 QRKEIKQNVVTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKL 455

Query: 328 EAAQNLENKM 337
           + +  L  K+
Sbjct: 456 DRSAMLFQKL 465



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 14/316 (4%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  ++  YG++ L  EA      M+   + K +
Sbjct: 345 GQLDMVKEADRLFWRMRKIGIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQR-KEIKQN 403

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ +IK   K    +    ++ +M   GIE +A+TY+TII  +GKA K +     F 
Sbjct: 404 VVTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQ 463

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +  S G   D     +MI AY  +G +   ++  +E            + IL K    A
Sbjct: 464 KL-RSSGAEIDQVLYQTMIVAYEKAGLVGHAKRLLHELKQPDNIPRTTAITILAK----A 518

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  ++   V            +  +  +I+ F +    + + E F+KM++ G  PNS   
Sbjct: 519 GRIEEATWVFRQAFDAGELKDISVFECMIDLFSRNKKHKNVLEVFEKMRNVGHFPNSDVI 578

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF----- 299
             +++AY K       D++  +++    +        ++S YG   D +++  LF     
Sbjct: 579 ALVLNAYGKLRDFDTADALYMEMQEEGCVFTDEVHFQMLSLYGARNDYKRLESLFERLDS 638

Query: 300 ---LTMKERHCVPDNI 312
              +  KE H V  +I
Sbjct: 639 DPNINKKELHLVVASI 654



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 182 GRAGMYDKMRSVMDFM-QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            R   + +  +++D++ ++  + P+V  YN+V+    +A   E     F +M+ R +  +
Sbjct: 134 SRESDWQRSLAILDWINEEALYTPSVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAAD 193

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY +L++ + K G+     S L+++E   V  D   ++ +I    +  D  K   +F 
Sbjct: 194 RYTYSTLITYFGKEGMFDAALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFS 253

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +K     PD + + TMI  +    +   A+ L  +M A+
Sbjct: 254 RLKRSGITPDIVAYNTMINVFGKAKLFREARFLLKEMRAV 293


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 167/349 (47%), Gaps = 13/349 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYS 69
           E+A  +FE M   GL P++  Y  ++  YG+ G   ++    +++M+S +  + D +T S
Sbjct: 226 ERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRS-NGLEFDEFTCS 284

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            +I +C +    D   K  A +   G      TYN+++  +GKA  + E  S    M E 
Sbjct: 285 TVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEM-EK 343

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
             C PD+ T N +++AY  +G  E+   + +     G+  +  T   +  +YG+AG  DK
Sbjct: 344 NNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDK 403

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             S    M++    P V TYN ++   GK   +E+M +    M+  G  PNS+T+ ++++
Sbjct: 404 ALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLA 463

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG---DVEKMGELFLTMKERH 306
                G+   V+ + R++++     +   FN +I AYG+ G   DV KM E  +      
Sbjct: 464 MCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTP 523

Query: 307 CVPDNITFATMIQAYNALGMTEAAQ----NLENKMIAMKENSGKKLIQC 351
           CV    T+  ++ A    G  EAA+    ++++K     E S   ++ C
Sbjct: 524 CV---TTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNC 569



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 143/273 (52%)

Query: 54  DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113
           D  SV +   DV  ++ ++ + ++  +++    +  +M   G+  + VTYN ++D YGK 
Sbjct: 198 DEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKM 257

Query: 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
            +           + S G   D FT +++ISA G  G +++  K++      G  A   T
Sbjct: 258 GRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFT 317

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L + +G+AG+Y +  S++  M+K    P +VTYN ++  + +AG  E+  ++   M 
Sbjct: 318 YNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMI 377

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +G+ PN+ITY ++++AY KAG   K  S  RQ++ S  + +   +N I+   G+   +E
Sbjct: 378 RKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLE 437

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +M ++   M+   C P+++T+ TM+      GM
Sbjct: 438 EMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGM 470



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 159/361 (44%), Gaps = 43/361 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A   F  + S+G       Y +L+  +G++G+  EA S + +M+  ++C PD+ TY+ 
Sbjct: 297 DEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEK-NNCPPDLVTYNE 355

Query: 71  LIKSCTK--FHR--FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           L+ +  +  FH    D I+ ++ +    GI  +A+TY T+I+ YGKA K ++  S F  M
Sbjct: 356 LVAAYVRAGFHEEGADFIDTMIRK----GIMPNAITYTTVINAYGKAGKEDKALSFFRQM 411

Query: 127 VESG----------------------------------GCHPDIFTLNSMISAYGNSGNI 152
            ESG                                  GC P+  T N+M++  GN G  
Sbjct: 412 KESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMH 471

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           + + + + E    G + +  T N L  +YGR G    +  + + M K  F P V TYN +
Sbjct: 472 KYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNAL 531

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           +    + G  E  E     MK +G KPN  +Y  +++ Y+K G    ++ I  ++ N  +
Sbjct: 532 LNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHI 591

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
                    ++ A  +   +  M   F    +    PD + F +M+  +    M + A  
Sbjct: 592 FPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHE 651

Query: 333 L 333
           +
Sbjct: 652 M 652



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 170/365 (46%), Gaps = 38/365 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+ +   + M+  G+ P+   YT +++AYG++G  D+A S    MK  S C P+V TY+ 
Sbjct: 367 EEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKE-SGCVPNVCTYNA 425

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K  R + +  +L +M   G   ++VT+NT++   G     + +   F  M +S 
Sbjct: 426 ILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREM-KSC 484

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+  T N++I AYG  G+   + K Y E    G    + T N L  +  R G ++  
Sbjct: 485 GFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAA 544

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGH---IEKMEE-------------------- 227
            SV+  M+ + F P   +Y++++  + K G+   IEK+EE                    
Sbjct: 545 ESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLA 604

Query: 228 ------------YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                        F++    G KP+ + + S++S ++K  +  +   +LR +  S +  D
Sbjct: 605 NFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPD 664

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
              +N ++  Y + G+  K  E+   +++    PD +++ T+I+ +   G M EA + L 
Sbjct: 665 LVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLS 724

Query: 335 NKMIA 339
              I+
Sbjct: 725 EMTIS 729



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 152/324 (46%), Gaps = 8/324 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + M G     +  + +F  M S G +P+ D + AL+ AYG+ G   +      +M   + 
Sbjct: 462 LAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIK-AG 520

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFE 117
             P V TY+ L+ +  +   ++  E ++ +M   G + +  +Y+ +++ Y   G  +  E
Sbjct: 521 FTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIE 580

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           ++E      + +G   P    L +++ A      +  ME+ + EF   G K D+   N +
Sbjct: 581 KIEEE----IYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSM 636

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              + +  MYD+   ++  +++    P +VTYN +++ + + G   K EE  K ++  G 
Sbjct: 637 LSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGG 696

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           KP+ ++Y +++  + + GL+ +    L ++  S +      +N  ++ Y   G   ++ E
Sbjct: 697 KPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEE 756

Query: 298 LFLTMKERHCVPDNITFATMIQAY 321
           +   M +  C P+ +T+  ++  Y
Sbjct: 757 VISYMIQHDCRPNELTYKIVVDGY 780



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 165/376 (43%), Gaps = 51/376 (13%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  + ++A   F  M   G  P+V  Y A++   G+   L+E    + DM+S + C P+
Sbjct: 396 GKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRS-NGCAPN 454

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             T++ ++  C        + ++  EM   G E +  T+N +I  YG+     ++   + 
Sbjct: 455 SVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYE 514

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+++G   P + T N++++A    G+ E  E    +    G K +  + +++   Y + 
Sbjct: 515 EMIKAG-FTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKG 573

Query: 185 G-----------MYD------------------KMRSVMDFMQKRF-------FFPTVVT 208
           G           +Y+                  K R++M  M++ F       + P +V 
Sbjct: 574 GNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMG-MERAFQEFCKHGYKPDLVL 632

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           +N ++  F K    ++  E  + ++  G++P+ +TY SL+  Y++ G   K + IL+ ++
Sbjct: 633 FNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQ 692

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE------RHCVPDNITFATMIQAYN 322
            S    D   +N +I  + + G    M E   T+ E      R C+   +T+ T +  Y+
Sbjct: 693 KSGGKPDLVSYNTVIKGFCRQG---LMQEAIRTLSEMTISGIRPCI---VTYNTFVAGYS 746

Query: 323 ALGMTEAAQNLENKMI 338
             GM    + + + MI
Sbjct: 747 GKGMFSEVEEVISYMI 762



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 113/285 (39%), Gaps = 37/285 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C        ++E M+  G  P V  Y AL++A  + G  + A S I DMKS    KP+
Sbjct: 501 GRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKS-KGFKPN 559

Query: 65  VYTYSILIKSCTK---------------------------------FHRFDLI--EKILA 89
             +YS+++    K                                 F R  L+  E+   
Sbjct: 560 ETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQ 619

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           E    G +   V +N+++  + K K ++        + ESG   PD+ T NS++  Y   
Sbjct: 620 EFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESG-LQPDLVTYNSLMDMYARG 678

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G   K E+        G K D+ + N + K + R G+  +    +  M      P +VTY
Sbjct: 679 GECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTY 738

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           N  +  +   G   ++EE    M     +PN +TY  +V  Y K 
Sbjct: 739 NTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKG 783



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 97/204 (47%), Gaps = 36/204 (17%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-------- 221
           D++    +  +Y R G Y++  ++ + M+K    PT+VTYN++++ +GK G         
Sbjct: 208 DVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGL 267

Query: 222 ----------------------------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
                                       +++  ++F ++K  G    + TY SL+  + K
Sbjct: 268 LDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGK 327

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           AG+  +  SIL+++E ++   D   +N +++AY +AG  E+  +   TM  +  +P+ IT
Sbjct: 328 AGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAIT 387

Query: 314 FATMIQAYNALGMTEAAQNLENKM 337
           + T+I AY   G  + A +   +M
Sbjct: 388 YTTVINAYGKAGKEDKALSFFRQM 411



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 80/171 (46%), Gaps = 1/171 (0%)

Query: 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           K D Q + ++ +  GR   +     ++D +    +   V  +  ++  + + G  E+   
Sbjct: 171 KIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAIT 230

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIM-KVDSILRQVENSDVILDTPFFNCIISAY 286
            F+KM+  G+ P  +TY  ++  Y K G    K+  +L ++ ++ +  D    + +ISA 
Sbjct: 231 MFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISAC 290

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           G+ G +++  + F  +K    V    T+ +++Q +   G+   A ++  +M
Sbjct: 291 GREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEM 341


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 160/334 (47%), Gaps = 2/334 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  + ++A  +FE M     +PSV  Y A+++   + G   +A      MK +    PD
Sbjct: 87  GRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG-IYPD 145

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VYT++I +KS     R     ++L  M   G E +AV+Y  +I G+ K     E    F 
Sbjct: 146 VYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFD 205

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M++ G C PDI T N +I      GN+++ EK +++    GV  ++ T NI  +   R 
Sbjct: 206 EMLKQGIC-PDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRK 264

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D+   +++ +      P V++YN +I  F K   + + E Y  KM + G++PN  TY
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTY 324

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            ++++ + KAG++   D ILR       I D   ++ +I+     GD+ +   +F    E
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAME 384

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +      I + T+++  +  G+   A  L   M+
Sbjct: 385 KGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMM 418



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 156/373 (41%), Gaps = 40/373 (10%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  +  +A      M++ G++P+   Y  +++ + ++G++  A   + D     
Sbjct: 292 LICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRD-AMFK 350

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD +TYS LI         +    +  E    G + S + YNT++ G  K     + 
Sbjct: 351 GFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQA 410

Query: 120 ESSFSAMVESG----------------------------------GCHPDIFTLNSMISA 145
                 M+E G                                  GC PDIFT N++I  
Sbjct: 411 LQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDG 470

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           Y    N++K  +  +     G+  D+ T N L     +A   D +      M ++   P 
Sbjct: 471 YCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPN 530

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           ++TYNI+IE+F K   + +  E FK+MK RG+ P+ +T C+L+      G + K   +  
Sbjct: 531 IITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFV 590

Query: 266 QVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            +E        T  FN +I+A+    +V    +LF  M    C PDN T+  MI +Y   
Sbjct: 591 TIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKT 650

Query: 325 GMTEAAQN--LEN 335
           G  + A    LEN
Sbjct: 651 GNIDLAHTFLLEN 663



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 148/331 (44%), Gaps = 5/331 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF+ ML  G+ P +  +  L+    + G + E+    + +     C P+++T++I 
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVC-PNLFTFNIF 257

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I+   +    D   ++L  +   G+    ++YNT+I G+ K  K  E E     MV SG 
Sbjct: 258 IQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSG- 316

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P+ FT N++I+ +  +G ++  +K   +    G   D  T + L       G  ++  
Sbjct: 317 VEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAM 376

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           +V     ++ F  +++ YN +++   K G + +  +  K M   G  P+  TY  +V+  
Sbjct: 377 AVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGL 436

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K G +   + IL        I D   FN +I  Y +  +++K  E+  TM      PD 
Sbjct: 437 CKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDV 496

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
           IT+ T++   N L       N+ +   AM E
Sbjct: 497 ITYNTLL---NGLCKARKLDNVVDTFKAMLE 524



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 141/350 (40%), Gaps = 44/350 (12%)

Query: 21  LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80
           ++  L+P    + A V  Y    L   A    N +K+    K  + TY  +I+      +
Sbjct: 1   MNRALQPK---HVAAVIRYQNDPL--NALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGK 55

Query: 81  FDLIEKILAEMSYLGIECSAV--TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
           F+ +E +LAEM    ++   +   Y  I+  YG+  K +E  + F  M +   C P + +
Sbjct: 56  FEAMEDVLAEMRK-NVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERM-DFYDCEPSVQS 113

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY---GR------------ 183
            N++++     G   +  K Y     +G+  D+ T  I  KS+   GR            
Sbjct: 114 YNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMP 173

Query: 184 ---------------AGMYD-----KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
                          +G Y      +   + D M K+   P ++T+N +I    K G+++
Sbjct: 174 GQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQ 233

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
           + E+ F K+  RG+ PN  T+   +    + G I +   +L  + +  +  D   +N +I
Sbjct: 234 ESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLI 293

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             + +   + +       M      P+  T+ T+I  +   GM + A  +
Sbjct: 294 CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 1/242 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G + +  TY  +I+  G   KFE ME   + M ++            ++  YG  G +++
Sbjct: 35  GFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQE 94

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               +   +    +  +Q+ N +       G + +   V   M+    +P V T+ I ++
Sbjct: 95  AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMK 154

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
           +F   G           M  +G + N+++YC+++S + K    ++   +  ++    +  
Sbjct: 155 SFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICP 214

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNL 333
           D   FN +I    + G+V++  +LF  + +R   P+  TF   IQ     G + EAA+ L
Sbjct: 215 DILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLL 274

Query: 334 EN 335
           E+
Sbjct: 275 ES 276


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 164/362 (45%), Gaps = 38/362 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  + +  L +GL P    +  +V+ Y Q G +++A++TI  M++V   +P+  TY+ 
Sbjct: 374 EKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVG-LRPNHVTYNS 432

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+K   +    +  EK + +M   G+  +  TYNT+IDGYG++  F+        M E  
Sbjct: 433 LVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEM-EKK 491

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P++ +   +I+      NI + E    +    GV  + Q  N+L      AG     
Sbjct: 492 GLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDA 551

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGK-------------------------------- 218
               D M  R   PT+VTYNI+I    K                                
Sbjct: 552 FRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISG 611

Query: 219 ---AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
              AG+++K  E ++ MK  G+KP   TY  L++   K GL++ V+ I +++   +++ D
Sbjct: 612 YSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVL-VEKIYQEMLQMNLVPD 670

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N +I  Y + GDV+K   L   M+ +   PD +T+  +I  +   G     +NL N
Sbjct: 671 RVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVN 730

Query: 336 KM 337
            M
Sbjct: 731 DM 732



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 160/359 (44%), Gaps = 37/359 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + +  E+A  + E M   G  P    YT L   + + G +D +  T+++       + 
Sbjct: 297 LCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASI-TLSEEAVRKGVQI 355

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
             YT SIL+ +  K    +  E++L +    G+    V +NTI++GY +     +  ++ 
Sbjct: 356 LDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTI 415

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E+ G  P+  T NS++  +    N+E+ EK   +    GV  +++T N L   YGR
Sbjct: 416 EKM-EAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGR 474

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS-- 241
           + ++D+   +++ M+K+   P V++Y  +I    K  +I + E     M HRG+ PN+  
Sbjct: 475 SCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQI 534

Query: 242 ---------------------------------ITYCSLVSAYSKAGLIMKVDSILRQVE 268
                                            +TY  L++   K G +M+ +++  ++ 
Sbjct: 535 YNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEIT 594

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
              +  D   +N +IS Y  AG+V+K  EL+ TMK+    P   T+  +I      G+ 
Sbjct: 595 RKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLV 653



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 163/374 (43%), Gaps = 39/374 (10%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G CK+   + A  LF+ ML   + P+   Y  L+  Y + G L+EAF+    MK V
Sbjct: 222 VVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMK-V 280

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-------- 110
            + +P + T++ L+    +    +  +++L EM   G      TY T+ DG+        
Sbjct: 281 ENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDA 340

Query: 111 ---------------------------GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
                                       K    E+ E      +E+G     +F  N+++
Sbjct: 341 SITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVF-FNTIV 399

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           + Y   G+I K      +   +G++ +  T N L K +      ++    +  M ++   
Sbjct: 400 NGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVL 459

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P V TYN +I+ +G++   ++  +  ++M+ +G+KPN I+Y  L++   K   I++ + I
Sbjct: 460 PNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVI 519

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L  + +  V+ +   +N +I     AG ++     F  M  R  VP  +T+  +I     
Sbjct: 520 LGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCK 579

Query: 324 LGMTEAAQNLENKM 337
            G    A+NL +++
Sbjct: 580 KGKVMEAENLASEI 593



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 142/320 (44%), Gaps = 36/320 (11%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  E+A    + M+  G+ P+V+ Y  L+  YG+S L D  F  + +M+     KP+V +
Sbjct: 441 KNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEK-KGLKPNVIS 499

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y  LI    K       E IL +M + G+  +A  YN +IDG   A K ++    F  MV
Sbjct: 500 YGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMV 559

Query: 128 E--------------SGGCHP--------------------DIFTLNSMISAYGNSGNIE 153
                          +G C                      D+ T NS+IS Y ++GN++
Sbjct: 560 AREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQ 619

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
           K  + Y      G+K  + T + L    G+ G+    +   + +Q     P  V YN +I
Sbjct: 620 KALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVLVEKIYQEMLQMNLV-PDRVIYNALI 678

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
             + + G ++K       M+ +G++P+ +TY  L+  + K G + KV +++  ++   +I
Sbjct: 679 HCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLI 738

Query: 274 LDTPFFNCIISAYGQAGDVE 293
             T  ++ +I  + +  D +
Sbjct: 739 PKTETYDILIVGHCKLKDFD 758



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 148/331 (44%), Gaps = 2/331 (0%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K   +++ L+ +M  DG+ PSV      + +   +   ++     +++   S  +PD + 
Sbjct: 126 KMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVE-SGLRPDQFM 184

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y   I++  K        +++  M   G+      YN +I G  K K+ ++ E  F  M+
Sbjct: 185 YGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEML 244

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           +     P+  T N++I  Y   G +E+         +  V+  I T N L     RA M 
Sbjct: 245 DRR-VAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMM 303

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           ++ + V++ M+   F P   TY  + +   K G+++      ++   +G++    T   L
Sbjct: 304 EEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSIL 363

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++A  K G + K + +L++   + +     FFN I++ Y Q GD+ K       M+    
Sbjct: 364 LNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGL 423

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            P+++T+ ++++ +  +   E A+    KM+
Sbjct: 424 RPNHVTYNSLVKKFCEMKNMEEAEKCIKKMV 454



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +++ ML   L P   +Y AL+  Y + G + +A S  + M++    +PD  TY+ LI   
Sbjct: 658 IYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEA-QGIQPDKMTYNCLILGH 716

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R   ++ ++ +M   G+     TY+ +I G+ K K F+     +  M E+G   P 
Sbjct: 717 FKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFT-PS 775

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +   +++I+     G     +   +E N+ G
Sbjct: 776 VSICDNLITGLREEGRSHDADVICSEMNMKG 806


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 161/341 (47%), Gaps = 2/341 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV LGK +  E    L + M + GLKP+V  +T  +   G++G ++EA+  +  M     
Sbjct: 232 MVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDD-EG 290

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C PDV TY++LI +     + D  +++ A+M     +   VTY T++D +   +  + + 
Sbjct: 291 CGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVN 350

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +S M E  G  PD+ T   ++ A   +GN  +     +     G+  ++ T N L   
Sbjct: 351 QFWSEM-EKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICG 409

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             R    D    + D M+     PT  TY + I+ +GK+G      E F+KMK +G+ PN
Sbjct: 410 LLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPN 469

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +   + + + +KAG   +   I   +++  ++ D+  +N ++  Y + G++++  +L  
Sbjct: 470 IVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLS 529

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            M E  C PD I   ++I         + A  +  +M  MK
Sbjct: 530 EMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK 570



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 169/336 (50%), Gaps = 2/336 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L K +   +A  ++  M+ DG +PS+  Y++L+   G+   ++     + +M+++   K
Sbjct: 199 LLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLG-LK 257

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+VYT++I I+   +  + +   +IL  M   G     VTY  +ID    A+K +  +  
Sbjct: 258 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV 317

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ M ++G   PD  T  +++  + ++ +++ + ++++E    G   D+ T  IL  +  
Sbjct: 318 FAKM-KTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALC 376

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG + +  + +D M+ +   P + TYN +I    +   ++   E F  M+  G+KP + 
Sbjct: 377 KAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAY 436

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY   +  Y K+G  +       +++   +  +    N  + +  +AG   +  ++F  +
Sbjct: 437 TYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGL 496

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           K+   VPD++T+  M++ Y+ +G  + A  L ++M+
Sbjct: 497 KDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMV 532



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 142/299 (47%), Gaps = 2/299 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  DG  P V  +T LV A  ++G   EAF+ ++ M+      P+++TY+ LI    + H
Sbjct: 356 MEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRD-QGILPNLHTYNTLICGLLRVH 414

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R D   +I   M  LG++ +A TY   ID YGK+        +F  M ++ G  P+I   
Sbjct: 415 RLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKM-KTKGIAPNIVAC 473

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N+ + +   +G   + ++ +     +G+  D  T N++ K Y + G  D+   ++  M +
Sbjct: 474 NASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVE 533

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P V+  N +I T  KA  +++  + F +MK   +KP  +TY +L++   K G I +
Sbjct: 534 NCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQE 593

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
              +   +       +T  FN +     +  +V    ++   M +  CVPD  T+ T+I
Sbjct: 594 AIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 652



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 144/309 (46%), Gaps = 4/309 (1%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E A  +F  + + G  P V  Y  L+ AYG+SG +DE F    +M S  +C+P+  T++I
Sbjct: 804  EIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEM-SAHECEPNTITHNI 862

Query: 71   LIKSCTKFHRFD-LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            +I    K    D  ++     MS      +A TY  +IDG  K+ +  E +  F  M + 
Sbjct: 863  VISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDY 922

Query: 130  GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G C P+    N +I+ +G +G  +     +      GV+ D++T ++L       G  D+
Sbjct: 923  G-CRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDE 981

Query: 190  MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLV 248
                   +++    P VV YN++I   GK   +E+    F +MK  RG+ P+  TY SL+
Sbjct: 982  GLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLI 1041

Query: 249  SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                 AG++ +   I  +++ + +  +   FN +I  Y  +G  E    ++ TM      
Sbjct: 1042 LNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFS 1101

Query: 309  PDNITFATM 317
            P+  T+  +
Sbjct: 1102 PNTGTYEQL 1110



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 156/328 (47%), Gaps = 3/328 (0%)

Query: 13   ASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            A +LFE    D G++P +  Y  L+    ++ +++ A      +K+ + C PDV TY+ L
Sbjct: 770  ARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKN-TGCIPDVATYNFL 828

Query: 72   IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
            + +  K  + D + +I  EMS    E + +T+N +I G  KA   ++    +  ++    
Sbjct: 829  LDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRD 888

Query: 132  CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              P   T   +I     SG + + ++ +   +  G + +    NIL   +G+AG  D   
Sbjct: 889  FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAAC 948

Query: 192  SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++   M K    P + TY+++++     G +++   YF+++K  G+ P+ + Y  +++  
Sbjct: 949  ALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGL 1008

Query: 252  SKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K   + +   +  +++ S  I  D   +N +I   G AG VE+ G+++  ++     P+
Sbjct: 1009 GKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPN 1068

Query: 311  NITFATMIQAYNALGMTEAAQNLENKMI 338
              TF  +I+ Y+  G  E A  +   M+
Sbjct: 1069 VFTFNALIRGYSLSGKPEHAYAVYQTMV 1096



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 100/206 (48%), Gaps = 1/206 (0%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K  +  +A  LFE M   G +P+  +Y  L++ +G++G  D A +    M      +P
Sbjct: 903  LSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVK-EGVRP 961

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            D+ TYS+L+       R D       E+   G+    V YN II+G GK  + EE    F
Sbjct: 962  DLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLF 1021

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            + M +S G  PD++T NS+I   G +G +E+  K YNE    G++ ++ T N L + Y  
Sbjct: 1022 NEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSL 1081

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTY 209
            +G  +   +V   M    F P   TY
Sbjct: 1082 SGKPEHAYAVYQTMVTGGFSPNTGTY 1107



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 163/402 (40%), Gaps = 74/402 (18%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +  +A  +F  +   GL P    Y  ++  Y + G +DEA   +++M   + C+P
Sbjct: 480 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVE-NCCEP 538

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV   + LI +  K  R D   K+   M  + ++ + VTYNT++ G GK  K +E    F
Sbjct: 539 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 598

Query: 124 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
             MV+ G                                  GC PD+FT N++I     +
Sbjct: 599 EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKN 658

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY-DKMRSVMDFMQKRFFFPTVVT 208
           G +++   ++++   + V  D  TL  L     +AG+  D  + + +F+      P  + 
Sbjct: 659 GQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLF 717

Query: 209 YNIVIETFGKAGHIEKMEEYFKKM---------------------KHR------------ 235
           +  ++ +      I+    + +++                     KH             
Sbjct: 718 WEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKF 777

Query: 236 ----GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
               G++P   TY  L+    +A +I     +  QV+N+  I D   +N ++ AYG++G 
Sbjct: 778 TKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGK 837

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++++ E++  M    C P+ IT   +I      G  + A +L
Sbjct: 838 IDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDL 879



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 124/252 (49%), Gaps = 2/252 (0%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            GK  + ++   +++ M +   +P+   +  ++S   ++G +D+A     D+ S  D  P 
Sbjct: 833  GKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPT 892

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              TY  LI   +K  R    +++   MS  G   +   YN +I+G+GKA + +   + F 
Sbjct: 893  ACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFK 952

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             MV+  G  PD+ T + ++      G +++   ++ E    G+  D+   N++    G+ 
Sbjct: 953  RMVKE-GVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKF 1011

Query: 185  GMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               ++   + + M+K R   P + TYN +I   G AG +E+  + + +++  G++PN  T
Sbjct: 1012 HRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFT 1071

Query: 244  YCSLVSAYSKAG 255
            + +L+  YS +G
Sbjct: 1072 FNALIRGYSLSG 1083



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 156/377 (41%), Gaps = 48/377 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + ++A  LFE M+  G  P+   +  L     ++  +  A   +  M  +  C P
Sbjct: 585 LGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMG-CVP 643

Query: 64  DVYTYSILIKSCTK----------FHRFD---------------------LIE---KILA 89
           DV+TY+ +I    K          FH+                       LIE   KI+A
Sbjct: 644 DVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKAGLIEDAYKIIA 703

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS-AMVESGGCHPDIFTLNSMISAYGN 148
              Y   +  A  +   + G   A+   +   SFS  +V +G C      L  +I     
Sbjct: 704 NFLYSCADQPANLFWEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSFK 763

Query: 149 SGNIEKMEKWYNEFNL-MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             N       + +F   +GV+  + T N+L      A M +  + V   ++     P V 
Sbjct: 764 HNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVA 823

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TYN +++ +GK+G I+++ E +K+M     +PN+IT+  ++S   KAG    VD  L   
Sbjct: 824 TYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAG---NVDDALDLY 880

Query: 268 ENSDVILDTPF------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
              D++ D  F      +  +I    ++G + +  +LF  M +  C P+   +  +I  +
Sbjct: 881 --YDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGF 938

Query: 322 NALGMTEAAQNLENKMI 338
              G  +AA  L  +M+
Sbjct: 939 GKAGEADAACALFKRMV 955



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 135/327 (41%), Gaps = 2/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+ + +F++M    +K   + Y  +       G L +A   +  M+       + Y+Y+ 
Sbjct: 137 EEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVL-NAYSYNG 195

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K        ++   M   G   S  TY++++ G GK +  E +      M E+ 
Sbjct: 196 LIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEM-ETL 254

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+++T    I   G +G I +  +     +  G   D+ T  +L  +   A   D  
Sbjct: 255 GLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA 314

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + V   M+     P  VTY  +++ F     ++ + +++ +M+  G  P+ +T+  LV A
Sbjct: 315 KEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDA 374

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             KAG   +  + L  + +  ++ +   +N +I    +   ++   E+F  M+     P 
Sbjct: 375 LCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPT 434

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
             T+   I  Y   G + +A     KM
Sbjct: 435 AYTYIVFIDYYGKSGDSVSALETFEKM 461



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 3/225 (1%)

Query: 116 FEEMESSFSAMVESGGCHPDIFT---LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
           F + +SSFS      G    + T    N M+ A    G IE+M   ++      +K D  
Sbjct: 97  FPDTDSSFSYFKSVAGNSNLVHTTETCNYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTN 156

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T   + K     G   +    +  M++  F     +YN +I    K+    +  E +++M
Sbjct: 157 TYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRM 216

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
              G +P+  TY SL+    K   I  V  +L+++E   +  +   F   I   G+AG +
Sbjct: 217 ILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKI 276

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +  E+   M +  C PD +T+  +I A       + A+ +  KM
Sbjct: 277 NEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKM 321


>gi|255661176|gb|ACU25757.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 426

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 160/343 (46%), Gaps = 43/343 (12%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILI---------- 72
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI          
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 73  KSCTKFHRF-------DLI------------------EKILAEMSYLGIECSAVTYNTII 107
           K+ + F R        DL+                    +++EM   G+  +  +Y+T++
Sbjct: 62  KAISIFSRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 167
             Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG+
Sbjct: 122 TMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180

Query: 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           + ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK   
Sbjct: 181 EPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
             ++M+HRG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY 
Sbjct: 241 LIQEMQHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +AG V     L   +K     PDNI     I      G  E A
Sbjct: 301 RAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSG-FMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKL 280



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G + L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRT-AGVMPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQHRGIEPNSITYSTIISIWGKVGKLDRAAVLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ +  A L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFMPDLVAYNAMINVFGXAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 158/335 (47%), Gaps = 3/335 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  +PE A   F  +L  GL+ ++ +   L+  + ++   DEA   +        C PDV
Sbjct: 126 RAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDV 185

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSF 123
           ++YSIL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K     +    F
Sbjct: 186 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 245

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+  G  PD+ T NS++ A   +  ++K E +  +     V  +  T N L   Y  
Sbjct: 246 KEMVQR-GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSS 304

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +   V   M++    P VVT ++++ +  K G I++  + F  M  +G  P+  +
Sbjct: 305 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 364

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +++ Y+  G ++ +  +   +    +  D   FN +I AY   G ++K   +F  M+
Sbjct: 365 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 424

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +    PD +T+ T+I A   +G  + A    N+MI
Sbjct: 425 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 459



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 152/328 (46%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF+ M+  G+ P +  Y ++V A  ++  +D+A + +  M +     P+ +TY+ L
Sbjct: 240 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVN-KRVLPNNWTYNNL 298

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I   +   ++    ++  EM    I    VT + ++    K  K +E    F  M   G 
Sbjct: 299 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 358

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
            +PD+F+ N M++ Y   G +  M   ++     G+  D  T N+L K+Y   GM DK  
Sbjct: 359 -NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 417

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 418 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 477

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G ++K   ++ ++ N+ + LD  FF+ II+   + G V     +F         PD 
Sbjct: 478 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 537

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
           + +  ++  Y  +G  E A  + + M++
Sbjct: 538 VVYNMLMDGYCLVGKMEKALRVFDAMVS 565



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 146/335 (43%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A      M++  + P+   Y  L+  Y  +G   EA     +M+  S   P
Sbjct: 267 LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS-ILP 325

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T S+L+ S  K+ +      +   M+  G      +YN +++GY       +M   F
Sbjct: 326 DVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF 385

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+   G  PD +T N +I AY N G ++K    +NE    GVK D+ T   +  +  R
Sbjct: 386 DLML-GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 444

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D      + M  +   P    YN +I+ F   G + K +E   ++ + GM  + + 
Sbjct: 445 IGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVF 504

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + S+++   K G +M   +I     N  +  D   +N ++  Y   G +EK   +F  M 
Sbjct: 505 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 564

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                P+ + + T++  Y  +G  +   +L  +M+
Sbjct: 565 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 599



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 157/364 (43%), Gaps = 39/364 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF++ML DG+ P    +  L+ AY   G+LD+A    N+M+     KPDV TY  +I + 
Sbjct: 384 LFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRD-HGVKPDVVTYRTVIAAL 442

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESS---------- 122
            +  + D   +   +M   G+      YN +I G+   G   K +E+ S           
Sbjct: 443 CRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDI 502

Query: 123 --FSAMVES-------------------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
             FS+++ +                    G HPD    N ++  Y   G +EK  + ++ 
Sbjct: 503 VFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDA 562

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G++ ++     L   Y + G  D+  S+   M +R   P+ + Y+I+I+   +AG 
Sbjct: 563 MVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGR 622

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
               +  F +M   G+  +  TY  ++    K     +   + +++   +V ++    N 
Sbjct: 623 TVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 682

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +I    Q   VE+  +LF ++     VP  +T++ MI      G+ E A+++ + M    
Sbjct: 683 MIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSM---- 738

Query: 342 ENSG 345
           +N+G
Sbjct: 739 QNAG 742



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 34/279 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +TY+IL+  CT+ HR +L      ++   G+  + +  N +++G+ +AK+ +E    
Sbjct: 112 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDI 171

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
                   GC PD+F+ + ++ +  +                                 G
Sbjct: 172 LLHRTPELGCVPDVFSYSILLKSLCDQ--------------------------------G 199

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G  D +  +M         P VV YN VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 200 KSGQADDLLRMMA-EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 258

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S+V A  KA  + K ++ LRQ+ N  V+ +   +N +I  Y   G  ++   +F  M
Sbjct: 259 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 318

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +    +PD +T + ++ +    G  + A+++ + M AMK
Sbjct: 319 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMK 356



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 2/263 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +F++ ++ GL P   VY  L+  Y   G +++A    + M S +  +P+V  Y  L+
Sbjct: 521 AQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVS-AGIEPNVVGYGTLV 579

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K  R D    +  EM   GI+ S + Y+ IIDG  +A +    +  F  M ESG  
Sbjct: 580 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESG-I 638

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             DI T N ++     +   ++    + E   M VK +I TLN +     +    ++ + 
Sbjct: 639 AMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKD 698

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   + +    P+VVTY+I+I    K G +E+ E+ F  M++ G +PNS     +V    
Sbjct: 699 LFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELL 758

Query: 253 KAGLIMKVDSILRQVENSDVILD 275
           K   I++  + L +++  +  L+
Sbjct: 759 KKNEIVRAGAYLSKIDERNFSLE 781



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/391 (18%), Positives = 154/391 (39%), Gaps = 72/391 (18%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
             C   ++A ++F  M   G+KP V  Y  +++A  + G +D+A    N M       PD
Sbjct: 408 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMID-QGVAPD 466

Query: 65  VYTYSILIKS-CTK---FHRFDLIEKILAEMSYL-------------------------- 94
            Y Y+ LI+  CT        +LI +I+    +L                          
Sbjct: 467 KYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFD 526

Query: 95  -----GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
                G+   AV YN ++DGY    K E+    F AMV S G  P++    ++++ Y   
Sbjct: 527 LTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV-SAGIEPNVVGYGTLVNGYCKI 585

Query: 150 GNIEKMEKWYNEFNLMGVKA-----------------------------------DIQTL 174
           G I++    + E    G+K                                    DI T 
Sbjct: 586 GRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTY 645

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           NI+ +   +   +D+   +   ++       ++T N +I+   +   +E+ ++ F  +  
Sbjct: 646 NIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 705

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
             + P+ +TY  +++   K GL+ + + +   ++N+    ++   N ++    +  ++ +
Sbjct: 706 SRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVR 765

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALG 325
            G     + ER+   +++T   ++  +++ G
Sbjct: 766 AGAYLSKIDERNFSLEHLTAMLLVDLFSSKG 796


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 152/319 (47%), Gaps = 2/319 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G+   +  Y  L++AY + GLL EAF  +N M S    KP ++TY+ +I    K  
Sbjct: 211 MEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSM-SGKGLKPTLFTYNAVINGLCKKG 269

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R+   + +  EM  +G+     TYNT++    +   F E +  FS M+  G   PD+ + 
Sbjct: 270 RYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRG-VSPDLISF 328

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           +S+I     +G++++   ++ +    G+  D     IL   Y R GM  +   + D M +
Sbjct: 329 SSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLE 388

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           +     VV YN ++    K   +      F +M  RG+ P+  T+ +L+  + K G + K
Sbjct: 389 QGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGK 448

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
             S+   +   ++  D   +N +I  + +  ++EK  EL+  M  R   P++I++A ++ 
Sbjct: 449 ALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVN 508

Query: 320 AYNALGMTEAAQNLENKMI 338
            Y  LG    A  L ++MI
Sbjct: 509 GYCNLGFVSEAFRLWDEMI 527



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 147/311 (47%), Gaps = 2/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA + F  M + GL P   +YT L++ Y ++G++ EA   I D      C  DV  Y+ 
Sbjct: 342 DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALE-IRDKMLEQGCALDVVAYNT 400

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K         +  EM   G+     T+ T+I G+ K     +  S F  M +  
Sbjct: 401 ILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKN 460

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PDI T N +I  +  +  +EK  + +NE     +  +  +  IL   Y   G   + 
Sbjct: 461 -IKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEA 519

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + D M ++   PT+VT N VI+ + ++G + K +E+  KM   G+ P+SITY +L++ 
Sbjct: 520 FRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLING 579

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + K   + K   ++ ++E   +  D   +N I++ + + G +++   +   M ER   PD
Sbjct: 580 FVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPD 639

Query: 311 NITFATMIQAY 321
             T+ T+I  Y
Sbjct: 640 RSTYTTLINGY 650



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 154/327 (47%), Gaps = 2/327 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  ML  G+ P +  +++L+    ++G LD+A     DMK+ S   PD   Y+IL
Sbjct: 308 EAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKT-SGLVPDNVIYTIL 366

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    +        +I  +M   G     V YNTI++G  K K   +  + F  MVE G 
Sbjct: 367 INGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERG- 425

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD  T  ++I  +   GN+ K    +       +K DI T NIL   + +    +K  
Sbjct: 426 VVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKAN 485

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + + M  R  FP  ++Y I++  +   G + +    + +M  +G+KP  +T  +++  Y
Sbjct: 486 ELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGY 545

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            ++G + K D  L ++ +  V  D+  +N +I+ + +   ++K   L   M+ +   PD 
Sbjct: 546 CRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDV 605

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           +T+  ++  +   G  + A+ +  KMI
Sbjct: 606 VTYNVILNGFCRQGRMQEAELILRKMI 632



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 124/280 (44%), Gaps = 1/280 (0%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S C  D   + +LI+S  +  + +        +   G   S    N+++ G  K    + 
Sbjct: 109 STCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDL 168

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               ++ +  SG    +++TLN M++A      I+ ++ +  +    G+ ADI T N L 
Sbjct: 169 AWEVYNEIARSG-IELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLI 227

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y R G+  +   VM+ M  +   PT+ TYN VI    K G   + +  F +M   G+ 
Sbjct: 228 NAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLS 287

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++ TY +L+    +    ++   I   + +  V  D   F+ +I    + G +++    
Sbjct: 288 PDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMY 347

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  MK    VPDN+ +  +I  Y   GM   A  + +KM+
Sbjct: 348 FRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKML 387



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 8/204 (3%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E+A+ L+  M+S  + P+   Y  LV+ Y   G + EAF   ++M      K
Sbjct: 474 GFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIR-KGIK 532

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P + T + +IK   +       ++ L +M   G+   ++TYNT+I+G+ K    E M+ +
Sbjct: 533 PTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKG---EYMDKA 589

Query: 123 FSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           F  +  +E+ G  PD+ T N +++ +   G +++ E    +    G+  D  T   L   
Sbjct: 590 FFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLING 649

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFP 204
           Y       +     D M +R F P
Sbjct: 650 YVSQDNLKEAFRFHDEMLQRGFVP 673



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C+  +  +A      M+S+G+ P    Y  L++ + +   +D+AF  IN M++  
Sbjct: 541 VIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMET-K 599

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +PDV TY++++    +  R    E IL +M   GI+    TY T+I+GY      +E 
Sbjct: 600 GLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEA 659

Query: 120 ESSFSAMVESGGCHPDIF 137
                 M++ G    D F
Sbjct: 660 FRFHDEMLQRGFVPDDDF 677



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/239 (17%), Positives = 99/239 (41%), Gaps = 38/239 (15%)

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R +++E +++  S  G++   + ++ +I  Y +A+K  E   +F  ++   G    I   
Sbjct: 97  RVEIVESLISMSSTCGVD--NLVFDLLIRSYVQARKLNEGTDTFK-ILRRKGFLVSINAC 153

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           NS++      G ++   + YNE    G++ ++ TLNI+                      
Sbjct: 154 NSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIM---------------------- 191

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
                        +    K   I+ ++ +   M+ +G+  + +TY +L++AY + GL+ +
Sbjct: 192 -------------VNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGE 238

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
              ++  +    +      +N +I+   + G   +   +F  M      PD  T+ T++
Sbjct: 239 AFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLL 297


>gi|255661160|gb|ACU25749.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 426

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + K   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G ++K    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     P++   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPESNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 122/320 (38%), Gaps = 74/320 (23%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S   +M+ +  C 
Sbjct: 88  VFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIK-CL 146

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 147 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 206

Query: 123 FSAM----------------------------------VESGGCHPDIFTLNSMISAYGN 148
           F  M                                  +++ G  P+  T +++IS +G 
Sbjct: 207 FRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGK 266

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G ++K    + +    GV  D      +  +Y RAG+    + ++  +++    P  + 
Sbjct: 267 VGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIP 322

Query: 209 YNIVIETFGKAGHIEK-----------------------------------MEEYFKKMK 233
            +I I     AG IE+                                   + E F KM+
Sbjct: 323 RDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMR 382

Query: 234 HRGMKPNSITYCSLVSAYSK 253
             G  P S     +++AY K
Sbjct: 383 GLGYFPESNVIALVLNAYGK 402



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  + ++A++LF+ + S G+     +Y  ++ AY ++GL+  A   ++++K     +
Sbjct: 263 IWGKVGKLDKAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK-----R 317

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD     I I       R +    +  +    G       +  +I  + K KK+  +   
Sbjct: 318 PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEV 377

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           F  M    G  P+   +  +++AYG     +K    Y E   +G
Sbjct: 378 FDKM-RGLGYFPESNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 156/327 (47%), Gaps = 2/327 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++  +A  L + M    LKP+V VY  L+  + + G  DEAF  I +M + +  +P
Sbjct: 302 LCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA-AGVQP 360

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TY  L++   K  + D    +L +M         +TYN II+G+ +    ++     
Sbjct: 361 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLL 420

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M E+ G  P+++T + MI     SG  EK      E    G+K +      L   Y R
Sbjct: 421 SEM-ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR 479

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G       + D M K    P +  YN +I    K G +E+  +YF +M+ RG+ PN  T
Sbjct: 480 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 539

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+  Y K G +   + +++++ ++ +  +   +  ++ +Y ++ D+EK+   F +M 
Sbjct: 540 YSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSML 599

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAA 330
           ++  + DN  +  +I   ++ G  EAA
Sbjct: 600 DQGVMLDNRIYGILIHNLSSSGNMEAA 626



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 145/307 (47%), Gaps = 2/307 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y  L++   +SG ++EAF    DM+      PD +TY  LI    K  R +  + +L EM
Sbjct: 260 YNVLIAGLCRSGAVEEAFGFKKDMEDYG-LVPDGFTYGALINGLCKSRRSNEAKALLDEM 318

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
           S   ++ + V Y  +IDG+ +    +E       MV + G  P+  T ++++      G 
Sbjct: 319 SCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMV-AAGVQPNKITYDNLVRGLCKMGQ 377

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++      +      + D  T N++ + + R         ++  M+     P V TY+I
Sbjct: 378 MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSI 437

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I    ++G  EK  +  ++M  +G+KPN+  Y  L+S Y + G +     I  ++   +
Sbjct: 438 MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVN 497

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           V+ D   +N +I    + G VE+  + F  M+ER  +P+  T++ +I  Y   G  E+A+
Sbjct: 498 VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAE 557

Query: 332 NLENKMI 338
            L  +M+
Sbjct: 558 QLVQRML 564



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 150/335 (44%), Gaps = 4/335 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  +PE+AS L E M + GLKP+  VY  L+S Y + G +  A    + M  V +  
Sbjct: 441 GLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKV-NVL 499

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+Y Y+ LI   +K  R +   K  A+M   G+  +  TY+ +I GY K    E  E  
Sbjct: 500 PDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQL 559

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+++G    D+  ++ ++ +Y  S +IEK+   +      GV  D +   IL  +  
Sbjct: 560 VQRMLDTGLKPNDVIYID-LLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLS 618

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            +G  +    V+  ++K    P V  Y+ +I    K    EK      +M  +G+ PN +
Sbjct: 619 SSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIV 678

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y +L+    K+G I    ++   +    ++ +   +  +I    + GD+     L+  M
Sbjct: 679 CYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEM 738

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 PD   ++ +    ++ G  E A  L  +M
Sbjct: 739 LATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 773



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 142/318 (44%), Gaps = 39/318 (12%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  Q ++ASLL + M+ D  +P    Y  ++  + +     +AF  +++M++ +   
Sbjct: 371 GLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMEN-AGIS 429

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+VYTYSI+I    +    +    +L EM+  G++ +A  Y  +I GY +          
Sbjct: 430 PNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEI 489

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +     PD++  NS+I      G +E+  K++ +                     
Sbjct: 490 FDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFAQ--------------------- 527

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                         MQ+R   P   TY+ +I  + K G +E  E+  ++M   G+KPN +
Sbjct: 528 --------------MQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDV 573

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y  L+ +Y K+  I KV S  + + +  V+LD   +  +I     +G++E    +   +
Sbjct: 574 IYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGI 633

Query: 303 KERHCVPDNITFATMIQA 320
           ++   VPD   ++++I  
Sbjct: 634 EKNGSVPDVHVYSSLISG 651



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 127/260 (48%), Gaps = 7/260 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+ S  F+ ML  G+     +Y  L+     SG ++ AF  ++ ++  +   PDV+ YS 
Sbjct: 589 EKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEK-NGSVPDVHVYSS 647

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K    +    IL EMS  G++ + V YN +IDG  K+       + F++++ + 
Sbjct: 648 LISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSIL-AK 706

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+  T  S+I      G+I      YNE    G+  D    ++LT     AG    +
Sbjct: 707 GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAG---DL 763

Query: 191 RSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
              M  +++ F     ++ ++N +++ F K G +++  +    +  RG+ PN++T  +++
Sbjct: 764 EQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENII 823

Query: 249 SAYSKAGLIMKVDSILRQVE 268
           S  S+AG + +V +I  +++
Sbjct: 824 SGLSEAGKLSEVHTIFVELQ 843



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/160 (19%), Positives = 80/160 (50%)

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           ++Y +   +D  + V+  M++R      VTYN++I    ++G +E+   + K M+  G+ 
Sbjct: 230 EAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLV 289

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+  TY +L++   K+    +  ++L ++  +++  +   +  +I  + + G+ ++  ++
Sbjct: 290 PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 349

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              M      P+ IT+  +++    +G  + A  L  +M+
Sbjct: 350 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMV 389



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 97/245 (39%), Gaps = 40/245 (16%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    E+A  + + M   G+ P++  Y AL+    +SG +  A +  N         
Sbjct: 651 GLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFN--------- 701

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
                 SIL K                     G+  + VTY ++IDG  K          
Sbjct: 702 ------SILAK---------------------GLVPNCVTYTSLIDGSCKVGDISNAFYL 734

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           ++ M+ + G  PD F  + + +   ++G++E+      E  L G  A I + N L   + 
Sbjct: 735 YNEMLAT-GITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFC 792

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   +   ++  +  R   P  +T   +I    +AG + ++   F +++ +  +  + 
Sbjct: 793 KRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAAR 852

Query: 243 TYCSL 247
            + SL
Sbjct: 853 HFSSL 857



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/181 (18%), Positives = 73/181 (40%)

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           S + AY      +  +K   E    G   +  T N+L     R+G  ++       M+  
Sbjct: 227 SALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDY 286

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P   TY  +I    K+    + +    +M    +KPN + Y +L+  + + G   + 
Sbjct: 287 GLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEA 346

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +++++  + V  +   ++ ++    + G +++   L   M      PD IT+  +I+ 
Sbjct: 347 FKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEG 406

Query: 321 Y 321
           +
Sbjct: 407 H 407


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 167/349 (47%), Gaps = 13/349 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYS 69
           E+A  +FE M   GL P++  Y  ++  YG+ G   ++    +++M+S +  + D +T S
Sbjct: 226 ERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRS-NGLEFDEFTCS 284

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            +I +C +    D   K  A +   G      TYN+++  +GKA  + E  S    M E 
Sbjct: 285 TVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEM-EK 343

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
             C PD+ T N +++AY  +G  E+   + +     G+  +  T   +  +YG+AG  DK
Sbjct: 344 NNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDK 403

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             S    M++    P V TYN ++   GK   +E+M +    M+  G  PNS+T+ ++++
Sbjct: 404 ALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLA 463

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG---DVEKMGELFLTMKERH 306
                G+   V+ + R++++     +   FN +I AYG+ G   DV KM E  +      
Sbjct: 464 MCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTP 523

Query: 307 CVPDNITFATMIQAYNALGMTEAAQ----NLENKMIAMKENSGKKLIQC 351
           CV    T+  ++ A    G  EAA+    ++++K     E S   ++ C
Sbjct: 524 CV---TTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNC 569



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 143/273 (52%)

Query: 54  DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113
           D  SV +   DV  ++ ++ + ++  +++    +  +M   G+  + VTYN ++D YGK 
Sbjct: 198 DEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKM 257

Query: 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
            +           + S G   D FT +++ISA G  G +++  K++      G  A   T
Sbjct: 258 GRSWNKILGLLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFT 317

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L + +G+AG+Y +  S++  M+K    P +VTYN ++  + +AG  E+  ++   M 
Sbjct: 318 YNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMI 377

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +G+ PN+ITY ++++AY KAG   K  S  RQ++ S  + +   +N I+   G+   +E
Sbjct: 378 RKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLE 437

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +M ++   M+   C P+++T+ TM+      GM
Sbjct: 438 EMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGM 470



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 159/361 (44%), Gaps = 43/361 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A   F  + S+G       Y +L+  +G++G+  EA S + +M+  ++C PD+ TY+ 
Sbjct: 297 DEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEK-NNCPPDLVTYNE 355

Query: 71  LIKSCTK--FHR--FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           L+ +  +  FH    D I+ ++ +    GI  +A+TY T+I+ YGKA K ++  S F  M
Sbjct: 356 LVAAYVRAGFHEEGADFIDTMIRK----GIMPNAITYTTVINAYGKAGKEDKALSFFRQM 411

Query: 127 VESG----------------------------------GCHPDIFTLNSMISAYGNSGNI 152
            ESG                                  GC P+  T N+M++  GN G  
Sbjct: 412 KESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMH 471

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           + + + + E    G + +  T N L  +YGR G    +  + + M K  F P V TYN +
Sbjct: 472 KYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNAL 531

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           +    + G  E  E     MK +G KPN  +Y  +++ Y+K G    ++ I  ++ N  +
Sbjct: 532 LNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHI 591

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
                    ++ A  +   +  M   F    +    PD + F +M+  +    M + A  
Sbjct: 592 FPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHE 651

Query: 333 L 333
           +
Sbjct: 652 M 652



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 170/365 (46%), Gaps = 38/365 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+ +   + M+  G+ P+   YT +++AYG++G  D+A S    MK  S C P+V TY+ 
Sbjct: 367 EEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKE-SGCVPNVCTYNA 425

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K  R + +  +L +M   G   ++VT+NT++   G     + +   F  M +S 
Sbjct: 426 ILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREM-KSC 484

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+  T N++I AYG  G+   + K Y E    G    + T N L  +  R G ++  
Sbjct: 485 GFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAA 544

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGH---IEKMEE-------------------- 227
            SV+  M+ + F P   +Y++++  + K G+   IEK+EE                    
Sbjct: 545 ESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLA 604

Query: 228 ------------YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                        F++    G KP+ + + S++S ++K  +  +   +LR +  S +  D
Sbjct: 605 NFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPD 664

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
              +N ++  Y + G+  K  E+   +++    PD +++ T+I+ +   G M EA + L 
Sbjct: 665 LVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLS 724

Query: 335 NKMIA 339
              I+
Sbjct: 725 EMTIS 729



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 152/324 (46%), Gaps = 8/324 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + M G     +  + +F  M S G +P+ D + AL+ AYG+ G   +      +M   + 
Sbjct: 462 LAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIK-AG 520

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFE 117
             P V TY+ L+ +  +   ++  E ++ +M   G + +  +Y+ +++ Y   G  +  E
Sbjct: 521 FTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIE 580

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           ++E      + +G   P    L +++ A      +  ME+ + EF   G K D+   N +
Sbjct: 581 KIEEE----IYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSM 636

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              + +  MYD+   ++  +++    P +VTYN +++ + + G   K EE  K ++  G 
Sbjct: 637 LSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGG 696

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           KP+ ++Y +++  + + GL+ +    L ++  S +      +N  ++ Y   G   ++ E
Sbjct: 697 KPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEE 756

Query: 298 LFLTMKERHCVPDNITFATMIQAY 321
           +   M +  C P+ +T+  ++  Y
Sbjct: 757 VISYMIQHDCRPNELTYKIVVDGY 780



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 165/376 (43%), Gaps = 51/376 (13%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  + ++A   F  M   G  P+V  Y A++   G+   L+E    + DM+S + C P+
Sbjct: 396 GKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRS-NGCAPN 454

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             T++ ++  C        + ++  EM   G E +  T+N +I  YG+     ++   + 
Sbjct: 455 SVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYE 514

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+++G   P + T N++++A    G+ E  E    +    G K +  + +++   Y + 
Sbjct: 515 EMIKAG-FTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKG 573

Query: 185 G-----------MYD------------------KMRSVMDFMQKRF-------FFPTVVT 208
           G           +Y+                  K R++M  M++ F       + P +V 
Sbjct: 574 GNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMG-MERAFQEFCKHGYKPDLVL 632

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           +N ++  F K    ++  E  + ++  G++P+ +TY SL+  Y++ G   K + IL+ ++
Sbjct: 633 FNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQ 692

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE------RHCVPDNITFATMIQAYN 322
            S    D   +N +I  + + G    M E   T+ E      R C+   +T+ T +  Y+
Sbjct: 693 KSGGKPDLVSYNTVIKGFCRQG---LMQEAIRTLSEMTISGIRPCI---VTYNTFVAGYS 746

Query: 323 ALGMTEAAQNLENKMI 338
             GM    + + + MI
Sbjct: 747 GKGMFSEVEEVISYMI 762



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 113/285 (39%), Gaps = 37/285 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C        ++E M+  G  P V  Y AL++A  + G  + A S I DMKS    KP+
Sbjct: 501 GRCGSQIDVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKS-KGFKPN 559

Query: 65  VYTYSILIKSCTK---------------------------------FHRFDLI--EKILA 89
             +YS+++    K                                 F R  L+  E+   
Sbjct: 560 ETSYSLMLNCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQ 619

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           E    G +   V +N+++  + K K ++        + ESG   PD+ T NS++  Y   
Sbjct: 620 EFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESG-LQPDLVTYNSLMDMYARG 678

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G   K E+        G K D+ + N + K + R G+  +    +  M      P +VTY
Sbjct: 679 GECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTY 738

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           N  +  +   G   ++EE    M     +PN +TY  +V  Y K 
Sbjct: 739 NTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKG 783



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 97/204 (47%), Gaps = 36/204 (17%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-------- 221
           D++    +  +Y R G Y++  ++ + M+K    PT+VTYN++++ +GK G         
Sbjct: 208 DVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGL 267

Query: 222 ----------------------------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
                                       +++  ++F ++K  G    + TY SL+  + K
Sbjct: 268 LDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGK 327

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           AG+  +  SIL+++E ++   D   +N +++AY +AG  E+  +   TM  +  +P+ IT
Sbjct: 328 AGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAIT 387

Query: 314 FATMIQAYNALGMTEAAQNLENKM 337
           + T+I AY   G  + A +   +M
Sbjct: 388 YTTVINAYGKAGKEDKALSFFRQM 411



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/171 (20%), Positives = 80/171 (46%), Gaps = 1/171 (0%)

Query: 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           K D Q + ++ +  GR   +     ++D +    +   V  +  ++  + + G  E+   
Sbjct: 171 KIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAIT 230

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIM-KVDSILRQVENSDVILDTPFFNCIISAY 286
            F+KM+  G+ P  +TY  ++  Y K G    K+  +L ++ ++ +  D    + +ISA 
Sbjct: 231 MFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTVISAC 290

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           G+ G +++  + F  +K    V    T+ +++Q +   G+   A ++  +M
Sbjct: 291 GREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEM 341


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 165/366 (45%), Gaps = 46/366 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE ++  G  P V  Y  L+ +  ++G L+EA     DM S   C P+V TYS+LI   
Sbjct: 59  LFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSS-RGCVPNVVTYSVLINGL 117

Query: 76  TKFHRFDLIEKILAEMSY---------------------------------------LGI 96
            K  R D   +++ EM+                                        L +
Sbjct: 118 CKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV 177

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
               VT++T+IDG  K  + +E  S F  M+ +GG  P++ T N++++    +  +E+  
Sbjct: 178 SPDTVTFSTLIDGLCKCGQIDEACSVFDDMI-AGGYVPNVITYNALVNGLCKADKMERAH 236

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV-----VTYNI 211
                    GV  D+ T ++L  ++ +A   D+   ++  M  R   P V     VT+NI
Sbjct: 237 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNI 296

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I    KAG+ E+    F++M  + ++P+ +T+ +L+    KAG +     IL  + N  
Sbjct: 297 LIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 356

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           V  +   +N ++    ++G +E+  +    M    CVPD+IT+ +++ A      T+ A 
Sbjct: 357 VPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDAL 416

Query: 332 NLENKM 337
            L +++
Sbjct: 417 QLVSEL 422



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 151/331 (45%), Gaps = 13/331 (3%)

Query: 5   GKCKQPEQASLLFEVM--LSDG---LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           G CKQ   A    E+M  L DG   + P    ++ L+    + G +DEA S  +DM +  
Sbjct: 153 GLCKQSMTAEAC-ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIA-G 210

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P+V TY+ L+    K  + +    ++  M   G+    +TY+ ++D + KA + +E 
Sbjct: 211 GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 270

Query: 120 ESSFSAMVESGGCHPDIF-----TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
                 M  S GC P++      T N +I+    +GN E+    + E     ++ D+ T 
Sbjct: 271 LELLHGMA-SRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTF 329

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
             L     +AG  +  R ++D M      P VVTYN ++    K+G IE+  ++ ++M  
Sbjct: 330 GALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVS 389

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G  P+SITY SLV A  +A        ++ ++++     DT  +N ++    ++G  E+
Sbjct: 390 SGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQ 449

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALG 325
              +   M  +   PD+ TFA      +  G
Sbjct: 450 AITVLEEMVGKGHQPDSFTFAACFSGLHRSG 480



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 143/326 (43%), Gaps = 9/326 (2%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  DG+ P++  Y  +++   +S  L        ++       PDV TY+ LI S  K  
Sbjct: 28  MARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGH-HPDVVTYNTLIDSLCKAG 86

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV-ESGGCHPDIFT 138
             +   ++  +MS  G   + VTY+ +I+G  K  + +E       M  +S    P+I T
Sbjct: 87  DLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIIT 146

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFN--LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            NS +          +  +         + V  D  T + L     + G  D+  SV D 
Sbjct: 147 YNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDD 206

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M    + P V+TYN ++    KA  +E+     + M  +G+ P+ ITY  LV A+ KA  
Sbjct: 207 MIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 266

Query: 257 IMKVDSIL-----RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           + +   +L     R    + ++ D   FN +I+   +AG+ E+   LF  M  ++  PD 
Sbjct: 267 VDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDV 326

Query: 312 ITFATMIQAYNALGMTEAAQNLENKM 337
           +TF  +I      G  EAA+++ + M
Sbjct: 327 MTFGALIDGLCKAGQVEAARDILDLM 352



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 151/325 (46%), Gaps = 15/325 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDC 61
           L KC Q ++A  +F+ M++ G  P+V  Y ALV+   ++  ++ A + I  M  K V+  
Sbjct: 191 LCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVT-- 248

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA-------VTYNTIIDGYGKAK 114
            PDV TYS+L+ +  K  R D   ++L  M+  G  C+        VT+N +I G  KA 
Sbjct: 249 -PDVITYSVLVDAFCKASRVDEALELLHGMASRG--CTPNVLVPDKVTFNILIAGACKAG 305

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
            FE+  + F  MV +    PD+ T  ++I     +G +E      +    +GV  ++ T 
Sbjct: 306 NFEQASALFEEMV-AKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTY 364

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N L     ++G  ++    ++ M      P  +TY  ++    +A   +   +   ++K 
Sbjct: 365 NALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKS 424

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G  P+++TY  LV    K+G   +  ++L ++       D+  F    S   ++G++  
Sbjct: 425 FGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAG 484

Query: 295 MGELFLTMKERHCVPDNITFATMIQ 319
             EL   +  +  +PD  T ++++ 
Sbjct: 485 TMELLRVVLAKGMLPDATTCSSILD 509



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 139/300 (46%), Gaps = 10/300 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E+A  + E M+  G+ P V  Y+ LV A+ ++  +DEA   ++ M S   C P
Sbjct: 226 LCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMAS-RGCTP 284

Query: 64  DVY-----TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +V      T++ILI    K   F+    +  EM    ++   +T+  +IDG  KA + E 
Sbjct: 285 NVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEA 344

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  M  + G  P++ T N+++     SG IE+  ++  E    G   D  T   L 
Sbjct: 345 ARDILDLM-GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLV 403

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +  RA   D    ++  ++   + P  VTYNI+++   K+G  E+     ++M  +G +
Sbjct: 404 YALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQ 463

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG---DVEKM 295
           P+S T+ +  S   ++G +     +LR V    ++ D    + I+    ++G   DV+ M
Sbjct: 464 PDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAM 523



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 139/320 (43%), Gaps = 46/320 (14%)

Query: 65  VYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           V  Y+I+++S C        +E    EM+  G+  + VTYNTII+G  K+         F
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             +VE G  HPD+ T N++I +   +G++E+  + + + +  G   ++ T ++L     +
Sbjct: 61  EELVERGH-HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCK 119

Query: 184 AGMYDKMRSVMDFMQKRF--FFPTVVTYN------------------------------- 210
            G  D+ R ++  M ++     P ++TYN                               
Sbjct: 120 VGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSP 179

Query: 211 ------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
                  +I+   K G I++    F  M   G  PN ITY +LV+   KA  + +  +++
Sbjct: 180 DTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMI 239

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC-----VPDNITFATMIQ 319
             + +  V  D   ++ ++ A+ +A  V++  EL   M  R C     VPD +TF  +I 
Sbjct: 240 ESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIA 299

Query: 320 AYNALGMTEAAQNLENKMIA 339
                G  E A  L  +M+A
Sbjct: 300 GACKAGNFEQASALFEEMVA 319


>gi|255661156|gb|ACU25747.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 426

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     I AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  S+   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 158/335 (47%), Gaps = 3/335 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  +PE A   F  +L  GL+ ++ +   L+  + ++   DEA   +        C PDV
Sbjct: 123 RAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDV 182

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSF 123
           ++YSIL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K     +    F
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 242

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+  G  PD+ T NS++ A   +  ++K E +  +     V  +  T N L   Y  
Sbjct: 243 KEMVQR-GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSS 301

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +   V   M++    P VVT ++++ +  K G I++  + F  M  +G  P+  +
Sbjct: 302 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 361

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +++ Y+  G ++ +  +   +    +  D   FN +I AY   G ++K   +F  M+
Sbjct: 362 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 421

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +    PD +T+ T+I A   +G  + A    N+MI
Sbjct: 422 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 153/328 (46%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF+ M+  G+ P +  Y ++V A  ++  +D+A + +  M +     P+ +TY+ L
Sbjct: 237 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVN-KRVLPNNWTYNNL 295

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I   +   ++    ++  EM    I    VT + ++    K  K +E    F  M   G 
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
            +PD+F+ N M++ Y   G +  M   ++     G+  D  T N+L K+Y   GM DK  
Sbjct: 356 -NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 414

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 415 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 474

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G ++K   ++ ++ N+ + LD  FF+ II+   + G V     +F         PD 
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 534

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
           + ++ ++  Y  +G  E A  + + M++
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVS 562



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 146/335 (43%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A      M++  + P+   Y  L+  Y  +G   EA     +M+  S   P
Sbjct: 264 LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS-ILP 322

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T S+L+ S  K+ +      +   M+  G      +YN +++GY       +M   F
Sbjct: 323 DVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF 382

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+   G  PD +T N +I AY N G ++K    +NE    GVK D+ T   +  +  R
Sbjct: 383 DLML-GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 441

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D      + M  +   P    YN +I+ F   G + K +E   ++ + GM  + + 
Sbjct: 442 IGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVF 501

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + S+++   K G +M   +I     N  +  D   ++ ++  Y   G +EK   +F  M 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                P+ + + T++  Y  +G  +   +L  +M+
Sbjct: 562 SAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREML 596



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 145/322 (45%), Gaps = 4/322 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           M+M   CK  + ++A  +F+ M   G  P V  Y  +++ Y   G L +  + + D+   
Sbjct: 329 MLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD-MTDLFDLMLG 387

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PD YT+++LIK+       D    I  EM   G++   VTY T+I    +  K ++
Sbjct: 388 DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDD 447

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F+ M++ G   PD +  N +I  +   G++ K ++  +E    G+  DI   + + 
Sbjct: 448 AMEKFNQMIDQG-VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSII 506

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +  + G     +++ D        P  V Y+++++ +   G +EK    F  M   G++
Sbjct: 507 NNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE 566

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN + YC+LV+ Y K G I +  S+ R++    +   T  ++ II    QAG        
Sbjct: 567 PNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVK 626

Query: 299 FLTMKERHCVPDNITFATMIQA 320
           F  M E     D  T+  +++ 
Sbjct: 627 FHEMTESGIAMDICTYNIVLRG 648



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 34/279 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +TY+IL+  CT+ HR +L      ++   G+  + +  N +++G+ +AK+ +E    
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDI 168

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
                   GC PD+F+ + ++ +  +                                 G
Sbjct: 169 LLHRTPELGCVPDVFSYSILLKSLCDQ--------------------------------G 196

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G  D +  +M         P VV YN VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 197 KSGQADDLLRMMA-EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 255

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S+V A  KA  + K ++ LRQ+ N  V+ +   +N +I  Y   G  ++   +F  M
Sbjct: 256 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 315

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +    +PD +T + ++ +    G  + A+++ + M AMK
Sbjct: 316 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMK 353



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 157/364 (43%), Gaps = 39/364 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF++ML DG+ P    +  L+ AY   G+LD+A    N+M+     KPDV TY  +I + 
Sbjct: 381 LFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRD-HGVKPDVVTYRTVIAAL 439

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESS---------- 122
            +  + D   +   +M   G+      YN +I G+   G   K +E+ S           
Sbjct: 440 CRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDI 499

Query: 123 --FSAMVES-------------------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
             FS+++ +                    G HPD    + ++  Y   G +EK  + ++ 
Sbjct: 500 VFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDA 559

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G++ ++     L   Y + G  D+  S+   M +R   P+ + Y+I+I+   +AG 
Sbjct: 560 MVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGR 619

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
               +  F +M   G+  +  TY  ++    K     +   + +++   +V ++    N 
Sbjct: 620 TVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 679

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +I    Q   VE+  +LF ++     VP  +T++ MI      G+ E A+++ + M    
Sbjct: 680 MIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSM---- 735

Query: 342 ENSG 345
           +N+G
Sbjct: 736 QNAG 739



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 125/263 (47%), Gaps = 2/263 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +F++ ++ GL P   VY+ L+  Y   G +++A    + M S +  +P+V  Y  L+
Sbjct: 518 AQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS-AGIEPNVVVYCTLV 576

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K  R D    +  EM   GI+ S + Y+ IIDG  +A +    +  F  M ESG  
Sbjct: 577 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESG-I 635

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             DI T N ++     +   ++    + E   M VK +I TLN +     +    ++ + 
Sbjct: 636 AMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKD 695

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   + +    P+VVTY+I+I    K G +E+ E+ F  M++ G +PNS     +V    
Sbjct: 696 LFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELL 755

Query: 253 KAGLIMKVDSILRQVENSDVILD 275
           K   I++  + L +++  +  L+
Sbjct: 756 KKNEIVRAGAYLSKIDERNFSLE 778


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 160/340 (47%), Gaps = 5/340 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            A  L + M   G  P V  Y  LV+   + G LDEA   +NDM S S C+P+V T++I+
Sbjct: 257 HAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS-SGCQPNVITHNII 315

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           ++S     R+   EK+LA+M   G   S VT+N +I+   +             M + G 
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG- 374

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  + N ++  +     +++  ++       G   DI T N +  +  + G  +   
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +++ +  +   P ++TYN VI+   KAG   K  +   +M+ + +KP++ITY SLV   
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGL 494

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           S+ G + +      + E   +  +   FN I+    ++   ++  +  + M  R C P+ 
Sbjct: 495 SREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNE 554

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI---AMKENSGKKL 348
            ++  +I+     GM + A  L N++     MK++S +++
Sbjct: 555 TSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQV 594



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 163/343 (47%), Gaps = 22/343 (6%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK ++   A+ + E++   G  P V  Y  ++S Y ++G ++ A S ++ M SVS   P
Sbjct: 150 LGKTRK---AAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM-SVS---P 202

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID------GYGKAKKF- 116
           DV TY+ +++S     +     ++L  M         +TY  +I+      G G A K  
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLL 262

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +EM           GC PD+ T N +++     G +++  K+ N+    G + ++ T NI
Sbjct: 263 DEMRDR--------GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           + +S    G +     ++  M ++ F P+VVT+NI+I    + G + +  +  +KM   G
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
            +PNS++Y  L+  + K   + +    L ++ +     D   +N +++A  + G VE   
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           E+   +  + C P  IT+ T+I      G T  A  L ++M A
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA 477



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 135/328 (41%), Gaps = 32/328 (9%)

Query: 41  QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 100
           ++G L+E F  + +M    +  PD+   + LI+   +  +     KIL  +   G     
Sbjct: 114 RTGELEEGFKFLENMVYHGNV-PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDV 172

Query: 101 VTYNTIIDGYGKAKK-------FEEMESS---------FSAMVESG-------------- 130
           +TYN +I GY KA +        + M  S           ++ +SG              
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ 232

Query: 131 -GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
             C+PD+ T   +I A      +    K  +E    G   D+ T N+L     + G  D+
Sbjct: 233 RDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDE 292

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
               ++ M      P V+T+NI++ +    G     E+    M  +G  P+ +T+  L++
Sbjct: 293 AIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
              + GL+ +   IL ++       ++  +N ++  + +   +++  E    M  R C P
Sbjct: 353 FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYP 412

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
           D +T+ TM+ A    G  E A  + N++
Sbjct: 413 DIVTYNTMLTALCKDGKVEDAVEILNQL 440



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 102/235 (43%), Gaps = 12/235 (5%)

Query: 111 GKAKKFEEMESSFS--------AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           G+A+KFE + S +S        + V S     D+ + N+ +     +G +E+  K+    
Sbjct: 70  GRAQKFETLSSGYSNSNGNGHYSSVNSSFALEDVES-NNHLRQMVRTGELEEGFKFLENM 128

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              G   DI     L + + R G   K   +++ ++     P V+TYN++I  + KAG I
Sbjct: 129 VYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEI 188

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                   +M    + P+ +TY +++ +   +G + +   +L ++   D   D   +  +
Sbjct: 189 NNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTIL 245

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           I A  +   V    +L   M++R C PD +T+  ++      G  + A    N M
Sbjct: 246 IEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 5/122 (4%)

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           + G +E+  ++ + M + G  P+ I   +L+  + + G   K   IL  +E S  + D  
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQAYNALGMTEAAQNLENK 336
            +N +IS Y +AG++       L++ +R  V PD +T+ T++++    G  + A  + ++
Sbjct: 174 TYNVMISGYCKAGEINNA----LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229

Query: 337 MI 338
           M+
Sbjct: 230 ML 231


>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 642

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 160/333 (48%), Gaps = 3/333 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + E+A  LFE M   G  P+V  YT L+   G++G ++EA+    +M +     PDV
Sbjct: 280 KVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLT-DGLTPDV 338

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFS 124
              + L+    K  R + +  +  EM       + V+YNT+I    ++K    E+ S F 
Sbjct: 339 VFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFD 398

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M ++ G  P  FT + +I  Y  +  +EK      E +  G          L  + G+A
Sbjct: 399 KM-KADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKA 457

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
             Y+    +   +++ F   +   Y ++I+ FGK G + +  + F +MK++G  P+   Y
Sbjct: 458 KRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+S   KAG++ + +S+LR++E +    D    N I++ + + G   +  E+F TMK 
Sbjct: 518 NALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKH 577

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               PD +T+ T++  +   GM E A  L  +M
Sbjct: 578 CGIKPDGVTYNTLLGCFAHAGMFEEAARLMREM 610



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 151/335 (45%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ K   +A  +F        KP+   Y +++    Q G  ++      +M +  DC P
Sbjct: 172 LGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFP 231

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TYS LI S  K  R D   ++  EM    ++ +   Y T++  Y K  K E+    F
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M +  GC P ++T   +I   G +G +E+    Y      G+  D+  LN L    G+
Sbjct: 292 EEM-KRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGK 350

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            G  +++ +V + M      PTVV+YN VI+  F     + ++  +F KMK  G+ P+  
Sbjct: 351 VGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEF 410

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+  Y K   + K   +L +++          +  +I+A G+A   E   ELF  +
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKEL 470

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           KE      +  +A MI+ +   G    A +L N+M
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 146/321 (45%), Gaps = 40/321 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + E+A  L++ ML+DGL P V     L++  G+ G L+E  +  N+M +   C P
Sbjct: 313 LGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWR-CTP 371

Query: 64  DV------------------------------------YTYSILIKSCTKFHRFDLIEKI 87
            V                                    +TYSILI    K +R +    +
Sbjct: 372 TVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLL 431

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-GGCHPDIFTLNSMISAY 146
           L EM   G       Y ++I+  GKAK++E     F  + E+ G     ++ +  MI  +
Sbjct: 432 LEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAV--MIKHF 489

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           G  G + +    +NE    G   D+   N L     +AGM ++  S++  M++      +
Sbjct: 490 GKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADI 549

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            ++NI++  F + G   +  E F+ MKH G+KP+ +TY +L+  ++ AG+  +   ++R+
Sbjct: 550 NSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMRE 609

Query: 267 VENSDVILDTPFFNCIISAYG 287
           +++     D   ++ I+ A G
Sbjct: 610 MKDKGFEYDAITYSSILDAVG 630



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 115/261 (44%), Gaps = 7/261 (2%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEM---SYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           D  TY  LI+   +   +  + + + E+   +Y+ +    V  + ++   G+AK   +  
Sbjct: 125 DCSTYMALIRCLEEARLYGEMYRTIQEVVRNTYVSV--GPVVLSELVKALGRAKMVSKAL 182

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTK 179
           S F    +   C P   T NS+I      G  EK+ + Y E  N      D  T + L  
Sbjct: 183 SVF-YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALIS 241

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           SY + G  D    + D M+     PT   Y  ++  + K G +EK  + F++MK  G  P
Sbjct: 242 SYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSP 301

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
              TY  L+    KAG + +   + + +    +  D  F N +++  G+ G +E++  +F
Sbjct: 302 TVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVF 361

Query: 300 LTMKERHCVPDNITFATMIQA 320
             M    C P  +++ T+I+A
Sbjct: 362 NEMGTWRCTPTVVSYNTVIKA 382



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 7/169 (4%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           L+ L K+ GRA M  K  SV    + R   PT  TYN VI    + G  EK+ E + +M 
Sbjct: 165 LSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMC 224

Query: 234 HRG-MKPNSITYCSLVSAYSKAGLIMKVDSILR---QVENSDVILDTPFFNCIISAYGQA 289
           + G   P++ITY +L+S+Y K G   + DS +R   +++++ +      +  ++  Y + 
Sbjct: 225 NEGDCFPDTITYSALISSYEKLG---RNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKV 281

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           G VEK  +LF  MK   C P   T+  +I+     G  E A +L   M+
Sbjct: 282 GKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVEEAYDLYKNML 330



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 6/220 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK-SVSDC 61
           G CK  + E+A LL E M   G  P    Y +L++A G++   + A     ++K +  + 
Sbjct: 418 GYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNV 477

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
              VY  +++IK   K  +      +  EM   G       YN ++ G  KA    E  S
Sbjct: 478 SSRVY--AVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANS 535

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               M E  GC  DI + N +++ +  +G   +  + +      G+K D  T N L   +
Sbjct: 536 LLRKM-EENGCTADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCF 594

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
             AGM+++   +M  M+ + F    +TY+ +++  G   H
Sbjct: 595 AHAGMFEEAARLMREMKDKGFEYDAITYSSILDAVGNMDH 634



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 102/242 (42%), Gaps = 3/242 (1%)

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
           +CS  TY  +I    +A+ + EM  +   +V +         L+ ++ A G +  + K  
Sbjct: 125 DCS--TYMALIRCLEEARLYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSKAL 182

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPTVVTYNIVIET 215
             + +      K    T N +     + G ++K+  V   M  +   FP  +TY+ +I +
Sbjct: 183 SVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISS 242

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           + K G  +     F +MK   M+P    Y +L+  Y K G + K   +  +++ +     
Sbjct: 243 YEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPT 302

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +  +I   G+AG VE+  +L+  M      PD +    ++     +G  E   N+ N
Sbjct: 303 VYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFN 362

Query: 336 KM 337
           +M
Sbjct: 363 EM 364


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 2/248 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ KQ  + + L + M+ DG KP+   Y  L+ +YG++  L EA +  N M+  + C+P
Sbjct: 369 LGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQE-AGCEP 427

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY  LI    K    D+   +   M   G+     TY+ II+  GKA         F
Sbjct: 428 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLF 487

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV  G C P++ T N MI+ +  + N E   K Y +    G + D  T +I+ +  G 
Sbjct: 488 CEMVGQG-CTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGH 546

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  ++   V   MQ++ + P    Y ++++ +GKAG+++K  ++++ M   G++PN  T
Sbjct: 547 CGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPT 606

Query: 244 YCSLVSAY 251
             SL+S +
Sbjct: 607 CNSLLSTF 614



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 140/286 (48%), Gaps = 1/286 (0%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           +K     K D +TY+ ++ +  +  +F  I K+L EM   G + + VTYN +I  YG+A 
Sbjct: 349 LKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRAN 408

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
             +E  + F+ M E+G C PD  T  ++I  +  +G ++     Y      G+  D  T 
Sbjct: 409 YLKEAMNVFNQMQEAG-CEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTY 467

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           +++    G+AG       +   M  +   P +VT+NI+I    KA + E   + ++ M++
Sbjct: 468 SVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQN 527

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G +P+ +TY  ++      G + + + +  +++  + + D P +  ++  +G+AG+V+K
Sbjct: 528 AGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDK 587

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             + +  M +    P+  T  +++  +  +     A NL   M+A+
Sbjct: 588 AWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLAL 633



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 129/277 (46%), Gaps = 7/277 (2%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFD 82
           G K     YT +V   G++    E    +++M  V D CKP+  TY+ LI S  + +   
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEM--VRDGCKPNTVTYNRLIHSYGRANYLK 411

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
               +  +M   G E   VTY T+ID + KA   +     +  M E+G   PD FT + +
Sbjct: 412 EAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAG-LSPDTFTYSVI 470

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           I+  G +G++    + + E    G   ++ T NI+   + +A  Y+    +   MQ   F
Sbjct: 471 INCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGF 530

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P  VTY+IV+E  G  G +E+ E  F +M+ +   P+   Y  LV  + KAG + K   
Sbjct: 531 QPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQ 590

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
             + +  + +  + P  N ++S + +   V +M E +
Sbjct: 591 WYQAMLQAGLRPNVPTCNSLLSTFLR---VHRMSEAY 624



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 6/211 (2%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D +  N ++    N  N      W       G K D  T   +  + GRA  + ++  ++
Sbjct: 325 DAYQANQVLKQMDNYANALGFFYWLKR--QPGFKHDGHTYTTMVGNLGRAKQFGEINKLL 382

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M +    P  VTYN +I ++G+A ++++    F +M+  G +P+ +TYC+L+  ++KA
Sbjct: 383 DEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKA 442

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G +     + ++++ + +  DT  ++ II+  G+AG +     LF  M  + C P+ +TF
Sbjct: 443 GFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTF 502

Query: 315 ATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
             MI  +      E A  L   M    +N+G
Sbjct: 503 NIMIALHAKARNYETALKLYRDM----QNAG 529



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 3/134 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E+A  +F  M      P   VY  LV  +G++G +D+A+     M   + 
Sbjct: 541 MEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQ-AG 599

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            +P+V T + L+ +  + HR      +L  M  LG+  S  TY  ++     A+   +M 
Sbjct: 600 LRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDMG 659

Query: 121 SSFSAMVESGGCHP 134
                M  SG  HP
Sbjct: 660 FCGQLMAVSG--HP 671


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 157/336 (46%), Gaps = 5/336 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ K+     LL E+    G  P V  Y+ +V+ Y + G LD+ +  I  MK     KP
Sbjct: 259 LGRIKEAHHLLLLMEL---KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKR-KGLKP 314

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           + Y Y  +I    +  +    E+  +EM   GI    V Y T+IDG+ K          F
Sbjct: 315 NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  S    PD+ T  ++IS +   G++ +  K ++E    G++ D  T   L   Y +
Sbjct: 375 YEM-HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCK 433

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG       V + M +    P VVTY  +I+   K G ++   E   +M   G++PN  T
Sbjct: 434 AGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFT 493

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S+V+   K+G I +   ++ + E + +  DT  +  ++ AY ++G+++K  E+   M 
Sbjct: 494 YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEML 553

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +   P  +TF  ++  +   GM E  + L N M+A
Sbjct: 554 GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLA 589



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 160/351 (45%), Gaps = 40/351 (11%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           CK  E A   F  M+  G+ P   VYT L+  + + G +  A     +M S  D  PDV 
Sbjct: 330 CKLAE-AEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS-RDITPDVL 387

Query: 67  TYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           TY+ +I    +    D++E  K+  EM   G+E  +VT+  +I+GY KA   ++     +
Sbjct: 388 TYTAIISGFCQIG--DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHN 445

Query: 125 AMVESG----------------------------------GCHPDIFTLNSMISAYGNSG 150
            M+++G                                  G  P+IFT NS+++    SG
Sbjct: 446 HMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSG 505

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           NIE+  K   EF   G+ AD  T   L  +Y ++G  DK + ++  M  +   PT+VT+N
Sbjct: 506 NIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 565

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           +++  F   G +E  E+    M  +G+ PN+ T+ SLV  Y     +    +I + + + 
Sbjct: 566 VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 625

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            V  D   +  ++  + +A ++++   LF  MK +       T++ +I+ +
Sbjct: 626 GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 676



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 144/303 (47%), Gaps = 2/303 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  M   GL+P    +T L++ Y ++G + +AF   N M   + C P+V TY+ L
Sbjct: 404 EAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ-AGCSPNVVTYTTL 462

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K    D   ++L EM  +G++ +  TYN+I++G  K+   EE         E+ G
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEE-AVKLVGEFEAAG 521

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
            + D  T  +++ AY  SG ++K ++   E    G++  I T N+L   +   GM +   
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 581

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++++M  +   P   T+N +++ +    +++     +K M  RG+ P+  TY +LV  +
Sbjct: 582 KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGH 641

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            KA  + +   + ++++     +    ++ +I  + +     +  E+F  M+      D 
Sbjct: 642 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADK 701

Query: 312 ITF 314
             F
Sbjct: 702 EIF 704



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 1/216 (0%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F    E G C  ++ + N +I      G I++         L G   D+ + + +   Y 
Sbjct: 234 FREFPEVGVCW-NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G  DK+  +++ M+++   P    Y  +I    +   + + EE F +M  +G+ P+++
Sbjct: 293 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTV 352

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y +L+  + K G I        ++ + D+  D   +  IIS + Q GD+ + G+LF  M
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 412

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +   PD++TF  +I  Y   G  + A  + N MI
Sbjct: 413 FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 448


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 3/335 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  +PE A   F  +L  GL+    + + L+  + ++   DEA   +        C PDV
Sbjct: 125 RAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDV 184

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSF 123
           ++Y+IL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K     +    F
Sbjct: 185 FSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 244

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+ G   PD+ T +S++ A   +  ++K E +  +    GV  D  T N L   Y  
Sbjct: 245 KEMVQRG-IPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSS 303

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +   V   M+++   P VV  N ++ +  K G I++  + F  M  +G  P+  +
Sbjct: 304 TGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 363

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +++ Y+  G ++ +  +   +    +  D   FN +I AY   G ++K   +F  M+
Sbjct: 364 YTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMR 423

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +    P  +T+ T+I A   +G  + A    N+MI
Sbjct: 424 DHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI 458



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 152/328 (46%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF+ M+  G+ P +  Y+++V A  ++  +D+A + +  M +     PD +TY+ L
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN-KGVLPDNWTYNNL 297

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I   +   ++    ++  EM    I    V  NT++    K  K +E    F  M   G 
Sbjct: 298 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQ 357

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
            +PD+F+   M++ Y   G +  M   ++     G+  DI T N+L K+Y   GM DK  
Sbjct: 358 -NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM 416

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 417 IIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGF 476

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G ++K   ++ ++ N+ + LD  FF  II+   + G V     +F         PD 
Sbjct: 477 CTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 536

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
           + +  ++  Y  +G  E A  + + M++
Sbjct: 537 VVYNMLMDGYCLVGKMEKALRVFDAMVS 564



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 144/335 (42%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A      M++ G+ P    Y  L+  Y  +G   EA     +M+  S   P
Sbjct: 266 LCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS-ILP 324

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV   + L+ S  K+ +      +   M+  G      +Y  +++GY       +M   F
Sbjct: 325 DVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLF 384

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+   G  PDI+T N +I AY N G ++K    +NE    GVK  + T   +  +  R
Sbjct: 385 DLML-GDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCR 443

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D      + M  +   P    Y+ +I+ F   G + K +E   ++ + GM+ + + 
Sbjct: 444 IGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVF 503

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + S+++   K G +M   +I     N  +  D   +N ++  Y   G +EK   +F  M 
Sbjct: 504 FGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 563

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                P+ + + T++  Y  +G  +   +L  +M+
Sbjct: 564 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 598



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 128/279 (45%), Gaps = 34/279 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  YTY+IL+  CT+ HR +L      ++   G+   A+  + ++ G+ +AK+ +E    
Sbjct: 111 PTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDI 170

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
                   GC PD+F+ N ++ +  N                                 G
Sbjct: 171 LLHRTPELGCVPDVFSYNILLKSLCNQ--------------------------------G 198

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G  D +  +M         P VV YN VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 199 KSGQADDLLRMMA-EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 257

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S+V A  KA  + K ++ LRQ+ N  V+ D   +N +I  Y   G  ++   +F  M
Sbjct: 258 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 317

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           + +  +PD +   T++ +    G  + A+++ + M AMK
Sbjct: 318 RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTM-AMK 355



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 159/365 (43%), Gaps = 41/365 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF++ML DG+ P +  +  L+ AY   G+LD+A    N+M+     KP V TY  +I + 
Sbjct: 383 LFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRD-HGVKPHVVTYMTVIAAL 441

Query: 76  TKFHRFD-----------------------LIE------------KILAEMSYLGIECSA 100
            +  + D                       LI+            ++++E+   G+    
Sbjct: 442 CRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDI 501

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           V + +II+   K  +  + ++ F   V  G  HPD    N ++  Y   G +EK  + ++
Sbjct: 502 VFFGSIINNLCKLGRVMDAQNIFDLTVNVG-LHPDAVVYNMLMDGYCLVGKMEKALRVFD 560

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
                G++ ++     L   Y + G  D+  S+   M ++   P+ + YNI+I+   +AG
Sbjct: 561 AMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAG 620

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
                +  F +M   G+  N  TY  ++    K     +   + +++   +V +D    N
Sbjct: 621 RTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLN 680

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +I+   Q   VE+  +LF ++     VP  +T++ MI      G+ E A+++ + M   
Sbjct: 681 TMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSM--- 737

Query: 341 KENSG 345
            +N+G
Sbjct: 738 -QNAG 741



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 141/310 (45%), Gaps = 2/310 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F+ M   G  P V  YT +++ Y   G L +  + + D+       PD+YT+++
Sbjct: 343 KEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVD-MTDLFDLMLGDGIAPDIYTFNV 401

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LIK+       D    I  EM   G++   VTY T+I    +  K ++    F+ M++  
Sbjct: 402 LIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQ- 460

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD +  + +I  +   G++ K ++  +E    G++ DI     +  +  + G     
Sbjct: 461 GVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDA 520

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           +++ D        P  V YN++++ +   G +EK    F  M   G++PN + Y +LV+ 
Sbjct: 521 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 580

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K G I +  S+ R++    +   T  +N II    +AG        F  M E     +
Sbjct: 581 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMN 640

Query: 311 NITFATMIQA 320
             T++ +++ 
Sbjct: 641 KCTYSIVLRG 650



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 121/263 (46%), Gaps = 2/263 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +F++ ++ GL P   VY  L+  Y   G +++A    + M S +  +P+V  Y  L+
Sbjct: 520 AQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVS-AGIEPNVVGYGTLV 578

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K  R D    +  EM   GI+ S + YN IIDG  +A +    +  F  M ESG  
Sbjct: 579 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG-I 637

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             +  T + ++     +   ++    + E   M VK DI TLN +     +    ++ + 
Sbjct: 638 AMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKD 697

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   + +    P  VTY+I+I    K G +E+ E+ F  M++ G +P+S     +V    
Sbjct: 698 LFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELL 757

Query: 253 KAGLIMKVDSILRQVENSDVILD 275
           K   I++  + L +++  +  L+
Sbjct: 758 KKNEIVRAGAYLSKIDERNFSLE 780



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/394 (19%), Positives = 152/394 (38%), Gaps = 82/394 (20%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C   ++A ++F  M   G+KP V  Y  +++A  + G +D+A    N M       PD Y
Sbjct: 409 CGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMID-QGVVPDKY 467

Query: 67  TYSILIKS-CTKFH----------------RFDLI------------------EKILAEM 91
            Y  LI+  CT                   R D++                  + I    
Sbjct: 468 AYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLT 527

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
             +G+   AV YN ++DGY    K E+    F AMV S G  P++    ++++ Y   G 
Sbjct: 528 VNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV-SAGIEPNVVGYGTLVNGYCKIGR 586

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD---------------- 195
           I++    + E    G+K      NI+       G+++  R+V                  
Sbjct: 587 IDEGLSLFREMLQKGIKPSTILYNIIID-----GLFEAGRTVPAKVKFHEMTESGIAMNK 641

Query: 196 ---------------FMQKRFFFP---------TVVTYNIVIETFGKAGHIEKMEEYFKK 231
                          F +  F F           ++T N +I    +   +E+ ++ F  
Sbjct: 642 CTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFAS 701

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           +   G+ P ++TY  +++   K GL+ + + +   ++N+    D+   N ++    +  +
Sbjct: 702 ISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNE 761

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           + + G     + ER+   +++T   ++  +++ G
Sbjct: 762 IVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKG 795


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 163/339 (48%), Gaps = 8/339 (2%)

Query: 2   VMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  E   A+ LF+ M   G +P+V  Y  L+ +  +  L++EA    + MK+  
Sbjct: 206 IINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKA-K 264

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD++TY+ LI+    F R+     +L EM+ L I  +  T+N ++D   K  K  E 
Sbjct: 265 RISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEA 324

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +  F  M E G   PD+ T +S++  Y     I +  K ++     G K D  + NIL K
Sbjct: 325 QGVFKTMTEMG-VEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIK 383

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y +A   D+ + + + M  +   P  V YN +I    + G + + ++ FK M   G  P
Sbjct: 384 GYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLP 443

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  TY  L+  + K G + K   + R ++++ +  D   +N +I A  + G+++   +LF
Sbjct: 444 DLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLF 503

Query: 300 LTMKERHCVPDNITFATMIQAYNALGM----TEAAQNLE 334
             +  +  +P+   + T+I      G+     EA +N+E
Sbjct: 504 SELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNME 542



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 156/356 (43%), Gaps = 36/356 (10%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  ML     P +  +T L+SA  + G    A  +++    ++   PD+YT SILI   +
Sbjct: 82  FNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFS 141

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
              R DL   + ++M  LG++  AVT+NT+I+G  K  KF +    F    E+ GC P +
Sbjct: 142 HLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDF-EASGCQPTV 200

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
           +T  ++I+     G        + +    G + ++ T NIL  S  +  + ++   +  +
Sbjct: 201 YTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSY 260

Query: 197 MQ---------------------KRF--------------FFPTVVTYNIVIETFGKAGH 221
           M+                     +R+                P + T+N++++   K G 
Sbjct: 261 MKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGK 320

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           + + +  FK M   G++P+ +TY SL+  YS    I++   +   +       D   +N 
Sbjct: 321 VSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNI 380

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  Y +A  +++  +LF  M  +   PDN+ + T+I     LG    AQ+L   M
Sbjct: 381 LIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNM 436



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 156/331 (47%), Gaps = 4/331 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  QA   F+   + G +P+V  YT +++   + G    A      M+  + C+
Sbjct: 174 GLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEE-AGCQ 232

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V TY+ILI S  K    +    I + M    I     TYN++I G    ++++E  + 
Sbjct: 233 PNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASAL 292

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M  S    P+IFT N ++ A    G + + +  +     MGV+ D+ T + L   Y 
Sbjct: 293 LNEMT-SLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYS 351

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                 + R + D M  +   P   +YNI+I+ + KA  I++ ++ F +M H+G+ P+++
Sbjct: 352 LRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNV 411

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y +L+    + G + +   + + + ++  + D   ++ ++  + + G + K   LF  M
Sbjct: 412 NYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVM 471

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +  +  PD   +  +I A    G  + A+ L
Sbjct: 472 QSTYLKPDIAMYNILIDAMCKFGNLKDARKL 502



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 146/308 (47%), Gaps = 12/308 (3%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPD 64
           ++ ++AS L   M S  + P++  +  LV A  + G + EA   F T+ +M      +PD
Sbjct: 284 RRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEM----GVEPD 339

Query: 65  VYTYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           V TYS L+   +   R +++E  K+   M   G +  A +YN +I GY KAK+ +E +  
Sbjct: 340 VVTYSSLMYGYSL--RMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQL 397

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ M+  G   PD    N++I      G + + +  +   +  G   D+ T ++L   + 
Sbjct: 398 FNEMIHQG-LTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFC 456

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   K   +   MQ  +  P +  YNI+I+   K G+++   + F ++  +G+ PN  
Sbjct: 457 KEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQ 516

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y ++++   K GL+ +     R +E      D   +N II  + Q  D  +  +L   M
Sbjct: 517 IYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEM 576

Query: 303 KERHCVPD 310
           ++R  V +
Sbjct: 577 RDRGFVAE 584



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%)

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           S S  +E  G  PDI+TL+ +I  + +   ++     +++   +G++ D  T N L    
Sbjct: 116 SLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGL 175

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G + +     D  +     PTV TY  +I    K G        FKKM+  G +PN 
Sbjct: 176 CKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNV 235

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  L+ +  K  L+ +   I   ++   +  D   +N +I         ++   L   
Sbjct: 236 VTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNE 295

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           M   + +P+  TF  ++ A    G    AQ +   M  M
Sbjct: 296 MTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEM 334



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF  +   GL P+V +YT +++   + GLLDEA     +M+    C PD ++Y++
Sbjct: 497 KDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEG-DGCPPDEFSYNV 555

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVT 102
           +I+   ++       +++ EM   G    A T
Sbjct: 556 IIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587


>gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa]
 gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa]
          Length = 416

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 150/317 (47%), Gaps = 5/317 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G +P   VY AL++A+     ++  L +A +    MKS+
Sbjct: 98  VMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKSLTKALAYFEKMKSI 157

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P+V TY+I++++  +    + +  +  ++    +     TYN ++D YGK     E
Sbjct: 158 ERCQPNVVTYNIILRAFAQARNVNQVNALFKDLEESIVSPDIYTYNGVLDAYGKNGMIRE 217

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           MES  S M +   C PDI T N +I +YG   + EKME+ +        K  + T N + 
Sbjct: 218 MESVLSRM-KIDQCKPDIITFNLLIDSYGKKQDFEKMEQVFKSLLRSKEKPTLPTFNSMI 276

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A + DK  SV   M    + P+ +T+  +I  +G    + K  + F  M   G +
Sbjct: 277 VNYGKARLKDKAESVFKKMADMRYTPSFITFESLIMMYGICDCVSKARDIFDDMVESGKE 336

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
               T  ++++ Y   GL M+   +L    +  V  ++  +  +  AY +A   E + +L
Sbjct: 337 VKVSTLNAVLNVYCMNGLHMEAHILLENARSIGVPPNSSTYKLLYRAYTKAKMKELVQKL 396

Query: 299 FLTMKERHCVPDNITFA 315
              M +   +P+   F 
Sbjct: 397 LKHMDKDGIIPNKRFFV 413



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 145/317 (45%), Gaps = 36/317 (11%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y+ L+S  G+ G    A    ++M++ S C+PD   Y+ LI +    H  D  + +   +
Sbjct: 92  YSKLISVMGKKGQTRMAMWLFSEMRN-SGCRPDTSVYNALITA--HLHSKDKAKSLTKAL 148

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
           +Y                      FE+M+S     +E   C P++ T N ++ A+  + N
Sbjct: 149 AY----------------------FEKMKS-----IER--CQPNVVTYNIILRAFAQARN 179

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           + ++   + +     V  DI T N +  +YG+ GM  +M SV+  M+     P ++T+N+
Sbjct: 180 VNQVNALFKDLEESIVSPDIYTYNGVLDAYGKNGMIREMESVLSRMKIDQCKPDIITFNL 239

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+++GK    EKME+ FK +     KP   T+ S++  Y KA L  K +S+ +++ +  
Sbjct: 240 LIDSYGKKQDFEKMEQVFKSLLRSKEKPTLPTFNSMIVNYGKARLKDKAESVFKKMADMR 299

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY--NALGMTEA 329
                  F  +I  YG    V K  ++F  M E        T   ++  Y  N L M EA
Sbjct: 300 YTPSFITFESLIMMYGICDCVSKARDIFDDMVESGKEVKVSTLNAVLNVYCMNGLHM-EA 358

Query: 330 AQNLEN-KMIAMKENSG 345
              LEN + I +  NS 
Sbjct: 359 HILLENARSIGVPPNSS 375



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++M G C    +A  +F+ M+  G +  V    A+++ Y  +GL  EA   + + +S+  
Sbjct: 311 IMMYGICDCVSKARDIFDDMVESGKEVKVSTLNAVLNVYCMNGLHMEAHILLENARSIG- 369

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 96
             P+  TY +L ++ TK    +L++K+L  M   GI
Sbjct: 370 VPPNSSTYKLLYRAYTKAKMKELVQKLLKHMDKDGI 405


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 174/379 (45%), Gaps = 41/379 (10%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           +++ G C   + ++A  L ++M  DG    P V  YT +++ + + G LD+A+ T ++M 
Sbjct: 167 ILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEML 226

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
                 P+V TYS +I +  K    D   ++L  M   G+  +  TYN+I+ GY  + + 
Sbjct: 227 D-RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +E    F   + S G  PD+ T NS++     +G   +  K ++     G+K +I T   
Sbjct: 286 KE-AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L + Y   G   +M  ++D M +    P    ++I+I  + K G +++    F KM+ +G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 237 MKPNSITYCSLVSAYSKAGLIM-----------------------------------KVD 261
           + P+++TY +++    K+G +                                    K  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            ++ ++ +  + LDT FFN II ++ + G V +  +LF  M      PD IT++T+I  Y
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 322 NALGMTEAAQNLENKMIAM 340
              G  + A  L   M+++
Sbjct: 525 CLAGKMDEATKLLASMVSV 543



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 159/349 (45%), Gaps = 6/349 (1%)

Query: 2   VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++G C    +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKF 116
             C P+V++Y+IL+K     +R     ++L  M   G +C    V+Y T+I+G+ K    
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           ++   ++  M++ G   P++ T +S+I+A   +  ++K  +        GV  + +T N 
Sbjct: 216 DKAYGTYHEMLDRG-ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +   Y  +G   +    +  M      P VVTYN +++   K G   +  + F  M  RG
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           +KP   TY +L+  Y+  G ++++  +L  +  + +  +   F+ +I AY + G V++  
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            +F  M+++   PD +T+ T+I      G  E A     +MI  + + G
Sbjct: 395 LVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 139/312 (44%), Gaps = 8/312 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA L+F  M   GL P    Y  ++    +SG +++A      M       P    Y+ 
Sbjct: 391 DQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID-ERLSPGNIVYNS 449

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S   F ++D  ++++ EM   GI    + +N+IID + K  +  E E  F  MV  G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PDI T +++I  Y  +G +++  K       +G+K D  T N L   Y +    +  
Sbjct: 510 -VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M+     P ++TYNI+++   +       +E +  +   G +    TY  ++  
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 251 YSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
             K  L    D  LR  +N   +D+ L+T  FN +I A  + G  ++  +LF  +     
Sbjct: 629 LCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGL 685

Query: 308 VPDNITFATMIQ 319
           VPD  T++ M +
Sbjct: 686 VPDVRTYSLMAE 697



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 135/297 (45%), Gaps = 4/297 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   ML  G+      + +++ ++ + G + E+    + M  +   KPD+ TYS 
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKPDIITYST 519

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       + D   K+LA M  +G++   VTYNT+I+GY K  + E+    F  M ES 
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREM-ESS 578

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK- 189
           G  PDI T N ++     +      ++ Y      G + ++ T NI+     +  + D+ 
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEA 638

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +R   +         T  T+NI+I    K G  ++ ++ F  +   G+ P+  TY  +  
Sbjct: 639 LRMFQNLCLTDLQLETR-TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAE 697

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
              + GL+ ++D +   +E +    ++   N I+    Q GD+ + G     + E+H
Sbjct: 698 NLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKH 754



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 124/264 (46%), Gaps = 4/264 (1%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+    ++  LF++M+  G+KP +  Y+ L+  Y  +G +DEA   +  M SV   KPD
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG-MKPD 548

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ LI    K  R +    +  EM   G+    +TYN I+ G  + ++    +  + 
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 608

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + ESG    ++ T N ++     +   ++  + +    L  ++ + +T NI+  +  + 
Sbjct: 609 GITESG-TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 667

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D+ + +   +      P V TY+++ E   + G +E++++ F  M+  G   NS   
Sbjct: 668 GRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRML 727

Query: 245 CSLVSAYSKAGLIMKVDSILRQVE 268
            S+V    + G I +  + L  ++
Sbjct: 728 NSIVRKLLQRGDITRAGTYLFMID 751


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 162/335 (48%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ E        M   G+ P V  Y  L++AY + GLL+EAF  ++ M S    KP
Sbjct: 368 LCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM-SGKGLKP 426

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V+TY+ +I    K  ++   + +L EM  +G+     TYN ++    +     + E  F
Sbjct: 427 CVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIF 486

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  S G  PD+ + +++I     +G +++  K++ +    G+  D     IL   + R
Sbjct: 487 DEM-PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCR 545

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G+  +   V D M ++     VVTYN ++    K   + + +E F +M  RG+ P+  T
Sbjct: 546 NGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYT 605

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +L++ Y K G + K  ++   +   ++  D   +N +I  + +  ++EK+ EL+  M 
Sbjct: 606 FTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMI 665

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            R   P++I++  +I  Y  +G    A  L ++M+
Sbjct: 666 SRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMV 700



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 157/311 (50%), Gaps = 2/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA   F  M + GL P   +YT L+  + ++G++ EA    ++M     C  DV TY+ 
Sbjct: 515 DQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLE-QGCXLDVVTYNT 573

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K       +++  EM+  G+     T+ T+I+GY K     +  + F  M++  
Sbjct: 574 ILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRN 633

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T N++I  +     +EK+ + +N+     +  +  +  IL   Y   G   + 
Sbjct: 634 -LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEA 692

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + D M ++ F  T++T N +++ + +AG+  K +E+   M  +G+ P+ ITY +L++ 
Sbjct: 693 FRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLING 752

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + K   + +  +++ ++ENS ++ D   +N I++ + + G +++   + L M ER   PD
Sbjct: 753 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 812

Query: 311 NITFATMIQAY 321
             T+ ++I  +
Sbjct: 813 RSTYTSLINGH 823



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 160/361 (44%), Gaps = 39/361 (10%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F V+ S GL  S++   +L+    + G +D A+    ++   S  + +VYT +I+I +  
Sbjct: 311 FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVR-SGVQVNVYTLNIMINALC 369

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K  + +  +  L++M   G+    VTYNT+I+ Y +    EE      +M    G  P +
Sbjct: 370 KNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM-SGKGLKPCV 428

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-GMYDKMRSVMD 195
           FT N++I+    +G   + +   +E   +G+  D  T NIL     R   M D  R + D
Sbjct: 429 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER-IFD 487

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M  +   P +V+++ +I    K G +++  +YF+ MK+ G+ P+++ Y  L+  + + G
Sbjct: 488 EMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNG 547

Query: 256 -----------------------------------LIMKVDSILRQVENSDVILDTPFFN 280
                                              ++ + D +  ++    V  D   F 
Sbjct: 548 VMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFT 607

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +I+ Y + G++ K   LF  M +R+  PD +T+ T+I  +      E    L N MI+ 
Sbjct: 608 TLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISR 667

Query: 341 K 341
           +
Sbjct: 668 R 668



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 144/331 (43%), Gaps = 21/331 (6%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           + P+  +++  ++   G+   V++  +LV  YG                   +C  +   
Sbjct: 251 RLPDAQAVILRMVRKSGVS-RVEIVESLVLTYG-------------------NCGSNPLV 290

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           + +L+++  +  +     +    +   G+  S    N+++ G  K    +     +  +V
Sbjct: 291 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 350

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            SG    +++TLN MI+A   +  IE  + + ++    GV  D+ T N L  +Y R G+ 
Sbjct: 351 RSG-VQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 409

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           ++   +MD M  +   P V TYN +I    K G   + +    +M   GM P++ TY  L
Sbjct: 410 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 469

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +    +   +M  + I  ++ +  V+ D   F+ +I    + G +++  + F  MK    
Sbjct: 470 LVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 529

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            PDN+ +  +I  +   G+   A  + ++M+
Sbjct: 530 APDNVIYTILIGGFCRNGVMSEALKVRDEML 560



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML  G+ P    Y  L++ + +   +D AF+ +N M++ S   PDV TY++++   ++  
Sbjct: 734 MLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMEN-SGLLPDVITYNVILNGFSRQG 792

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           R    E I+ +M   G+     TY ++I+G+      +E       M++ G    D F
Sbjct: 793 RMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDKF 850


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 158/335 (47%), Gaps = 3/335 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  +PE A   F  +L  GL+ ++ +   L+  + ++   DEA   +        C PDV
Sbjct: 136 RAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDV 195

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSF 123
           ++YSIL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K     +    F
Sbjct: 196 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 255

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+  G  PD+ T NS++ A   +  ++K E +  +     V  +  T N L   Y  
Sbjct: 256 KEMVQR-GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSS 314

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +   V   M++    P VVT ++++ +  K G I++  + F  M  +G  P+  +
Sbjct: 315 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 374

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +++ Y+  G ++ +  +   +    +  D   FN +I AY   G ++K   +F  M+
Sbjct: 375 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMR 434

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +    PD +T+ T+I A   +G  + A    N+MI
Sbjct: 435 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 469



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 153/328 (46%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF+ M+  G+ P +  Y ++V A  ++  +D+A + +  M +     P+ +TY+ L
Sbjct: 250 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVN-KRVLPNNWTYNNL 308

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I   +   ++    ++  EM    I    VT + ++    K  K +E    F  M   G 
Sbjct: 309 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQ 368

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
            +PD+F+ N M++ Y   G +  M   ++     G+  D  T N+L K+Y   GM DK  
Sbjct: 369 -NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 427

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 428 IIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF 487

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G ++K   ++ ++ N+ + LD  FF+ II+   + G V     +F         PD 
Sbjct: 488 CTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 547

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
           + ++ ++  Y  +G  E A  + + M++
Sbjct: 548 VVYSMLMDGYCLVGKMEKALRVFDAMVS 575



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 146/335 (43%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A      M++  + P+   Y  L+  Y  +G   EA     +M+  S   P
Sbjct: 277 LCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS-ILP 335

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T S+L+ S  K+ +      +   M+  G      +YN +++GY       +M   F
Sbjct: 336 DVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF 395

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+   G  PD +T N +I AY N G ++K    +NE    GVK D+ T   +  +  R
Sbjct: 396 DLML-GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 454

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D      + M  +   P    YN +I+ F   G + K +E   ++ + GM  + + 
Sbjct: 455 IGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVF 514

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + S+++   K G +M   +I     N  +  D   ++ ++  Y   G +EK   +F  M 
Sbjct: 515 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 574

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                P+ + + T++  Y  +G  +   +L  +M+
Sbjct: 575 SAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREML 609



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 145/322 (45%), Gaps = 4/322 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           M+M   CK  + ++A  +F+ M   G  P V  Y  +++ Y   G L +  + + D+   
Sbjct: 342 MLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD-MTDLFDLMLG 400

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PD YT+++LIK+       D    I  EM   G++   VTY T+I    +  K ++
Sbjct: 401 DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDD 460

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F+ M++ G   PD +  N +I  +   G++ K ++  +E    G+  DI   + + 
Sbjct: 461 AMEKFNQMIDQG-VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSII 519

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +  + G     +++ D        P  V Y+++++ +   G +EK    F  M   G++
Sbjct: 520 NNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE 579

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN + YC+LV+ Y K G I +  S+ R++    +   T  ++ II    QAG        
Sbjct: 580 PNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMK 639

Query: 299 FLTMKERHCVPDNITFATMIQA 320
           F  M E     D  T+  +++ 
Sbjct: 640 FHEMTESGIAMDICTYNIVLRG 661



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 158/364 (43%), Gaps = 39/364 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF++ML DG+ P    +  L+ AY   G+LD+A    N+M+     KPDV TY  +I + 
Sbjct: 394 LFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRD-HGVKPDVVTYRTVIAAL 452

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESS---------- 122
            +  + D   +   +M   G+      YN +I G+   G   K +E+ S           
Sbjct: 453 CRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDI 512

Query: 123 --FSAMVES-------------------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
             FS+++ +                    G HPD    + ++  Y   G +EK  + ++ 
Sbjct: 513 VFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDA 572

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G++ ++     L   Y + G  D+  S+   M +R   P+ + Y+I+I+   +AG 
Sbjct: 573 MVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGR 632

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
               +  F +M   G+  +  TY  ++    K     +   + +++   +V ++    N 
Sbjct: 633 TVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNT 692

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +I    Q   VE+  +LF ++     VP+ +T++ MI      G+ E A+++ + M    
Sbjct: 693 MIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSM---- 748

Query: 342 ENSG 345
           +N+G
Sbjct: 749 QNAG 752



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 34/279 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +TY+IL+  CT+ HR +L      ++   G+  + +  N +++G+ +AK+ +E    
Sbjct: 122 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDI 181

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
                   GC PD+F+ + ++ +  +                                 G
Sbjct: 182 LLHRTPELGCVPDVFSYSILLKSLCDQ--------------------------------G 209

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G  D +  +M         P VV YN VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 210 KSGQADDLLRMMA-EGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 268

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S+V A  KA  + K ++ LRQ+ N  V+ +   +N +I  Y   G  ++   +F  M
Sbjct: 269 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 328

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +    +PD +T + ++ +    G  + A+++ + M AMK
Sbjct: 329 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTM-AMK 366



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 2/263 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +F++ ++ GL P   VY+ L+  Y   G +++A    + M S +  +P+V  Y  L+
Sbjct: 531 AQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVS-AGIEPNVVVYCTLV 589

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K  R D    +  EM   GI+ S + Y+ IIDG  +A +    +  F  M ESG  
Sbjct: 590 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESG-I 648

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             DI T N ++     +   ++    + E   M VK +I TLN +     +    ++ + 
Sbjct: 649 AMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKD 708

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   + +    P VVTY+I+I    K G +E+ E+ F  M++ G +PNS     +V    
Sbjct: 709 LFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELL 768

Query: 253 KAGLIMKVDSILRQVENSDVILD 275
           K   I++  + L +++  +  L+
Sbjct: 769 KKNEIVRAGAYLSKIDERNFSLE 791


>gi|255661168|gb|ACU25753.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 352

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 2/158 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 160 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 218

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K +     F 
Sbjct: 219 VVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 278

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
            +  S G   D     +MI AY  +G +   ++  +E 
Sbjct: 279 KL-RSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL 315



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 160/334 (47%), Gaps = 2/334 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  + ++A  +FE M     +PSV  Y A+++   + G   +A      MK +    PD
Sbjct: 87  GRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIG-IYPD 145

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VYT++I +KS     R     ++L  M   G E +AV+Y  +I G+ K     E    F 
Sbjct: 146 VYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFD 205

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M++ G C PDI T N +I      GN+++ EK +++    GV  ++ T NI  +   R 
Sbjct: 206 EMLKQGIC-PDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRK 264

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D+   +++ +      P V++YN +I  F K   + + E Y  KM + G++PN  TY
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTY 324

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            ++++ + KAG++   D ILR       I D   ++ +I+     GD+ +   +F    E
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAME 384

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +      I + T+++  +  G+   A  L   M+
Sbjct: 385 KGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMM 418



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 157/373 (42%), Gaps = 40/373 (10%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  +  +A      M++ G++P+   Y  +++ + ++G++  A   + D     
Sbjct: 292 LICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRD-AMFK 350

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD +TYS LI         +    +  E    G + S + YNT++ G  K     + 
Sbjct: 351 GFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQA 410

Query: 120 ESSFSAMVESG----------------------------------GCHPDIFTLNSMISA 145
                 M+E G                                  GC PDIFT N++I  
Sbjct: 411 LQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDG 470

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           Y    N++K  +  +     G+  D+ T N L     +A   D +      M ++   P 
Sbjct: 471 YCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPN 530

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           ++TYNI+IE+F K   + +  E FK+MK RG+ P+ +T C+L+      G + K   +  
Sbjct: 531 IITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFV 590

Query: 266 QVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            +E        T  FN +I+A+ +  +V    +LF  M    C PDN T+  MI +Y   
Sbjct: 591 TIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKT 650

Query: 325 GMTEAAQN--LEN 335
           G  + A    LEN
Sbjct: 651 GNIDLAHTFLLEN 663



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 148/331 (44%), Gaps = 5/331 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF+ ML  G+ P +  +  L+    + G + E+    + +     C P+++T++I 
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVC-PNLFTFNIF 257

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I+   +    D   ++L  +   G+    ++YNT+I G+ K  K  E E     MV SG 
Sbjct: 258 IQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSG- 316

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P+ FT N++I+ +  +G ++  +K   +    G   D  T + L       G  ++  
Sbjct: 317 VEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAM 376

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           +V     ++ F  +++ YN +++   K G + +  +  K M   G  P+  TY  +V+  
Sbjct: 377 AVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGL 436

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K G +   + IL        I D   FN +I  Y +  +++K  E+  TM      PD 
Sbjct: 437 CKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDV 496

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
           IT+ T++   N L       N+ +   AM E
Sbjct: 497 ITYNTLL---NGLCKARKLDNVVDTFKAMLE 524



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 141/350 (40%), Gaps = 44/350 (12%)

Query: 21  LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80
           ++  L+P    + A V  Y    L   A    N +K+    K  + TY  +I+      +
Sbjct: 1   MNRALQPK---HVAAVIRYQNDPL--NALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGK 55

Query: 81  FDLIEKILAEMSYLGIECSAV--TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
           F+ +E +LAEM    ++   +   Y  I+  YG+  K +E  + F  M +   C P + +
Sbjct: 56  FEAMEDVLAEMRK-NVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERM-DFYDCEPSVQS 113

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY---GR------------ 183
            N++++     G   +  K Y     +G+  D+ T  I  KS+   GR            
Sbjct: 114 YNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMP 173

Query: 184 ---------------AGMYD-----KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
                          +G Y      +   + D M K+   P ++T+N +I    K G+++
Sbjct: 174 GQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQ 233

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
           + E+ F K+  RG+ PN  T+   +    + G I +   +L  + +  +  D   +N +I
Sbjct: 234 ESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLI 293

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             + +   + +       M      P+  T+ T+I  +   GM + A  +
Sbjct: 294 CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 105/242 (43%), Gaps = 1/242 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G + +  TY  +I+  G   KFE ME   + M ++            ++  YG  G +++
Sbjct: 35  GFKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQE 94

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               +   +    +  +Q+ N +       G + +   V   M+    +P V T+ I ++
Sbjct: 95  AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMK 154

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
           +F   G           M  +G + N+++YC+++S + K    ++   +  ++    +  
Sbjct: 155 SFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICP 214

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNL 333
           D   FN +I    + G+V++  +LF  + +R   P+  TF   IQ     G + EAA+ L
Sbjct: 215 DILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLL 274

Query: 334 EN 335
           E+
Sbjct: 275 ES 276


>gi|255661164|gb|ACU25751.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 426

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 57
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 58  --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSXFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 152/337 (45%), Gaps = 10/337 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S   +M+ +  C 
Sbjct: 88  VFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSXFAEMREIK-CL 146

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 147 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 206

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +      ++ T NSM+  YG +   EK      E    G++ +  T + +   +G
Sbjct: 207 FRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWG 265

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + G  D  R+ M F + R     +  V Y  +I  + +AG +     + K++ H   +P+
Sbjct: 266 KVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVA----HAKRLLHELKRPD 319

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +I     +   + AG I +   + RQ  ++  + D   F  +I  + +      + E+F 
Sbjct: 320 NIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFD 379

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 380 KMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/362 (20%), Positives = 152/362 (41%), Gaps = 74/362 (20%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F       AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G+  + + Y +++ AY 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 253 K-------------------------------AGLIMKVDSILRQVENSDVILDTPFFN- 280
           +                               AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 281 ----------------------------------CIISAYGQAGDVEKMGELFLTMKERH 306
                                              +++AYG+  + +K  ++++ M+E  
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420

Query: 307 CV 308
           CV
Sbjct: 421 CV 422



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +    F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSXFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 158/344 (45%), Gaps = 37/344 (10%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LFE +   G+KP    Y AL+  Y ++G L +A S +++M+      PD +TYS+L
Sbjct: 322 EAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEK-RGVSPDEHTYSLL 380

Query: 72  IKSCTKFHRFDLIE-----------------------------------KILAEMSYLGI 96
           I +     R++                                      ++L EM  +G+
Sbjct: 381 IDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGV 440

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
           +     YN +ID +GK    +   ++F  M+ S G  PD  T N++I  +   G     E
Sbjct: 441 KPDRQFYNVVIDTFGKFNCLDHAMTTFDRML-SEGIEPDRVTWNTLIDCHCKHGRHIVAE 499

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           + +      G      T NI+  SYG    +D M+ ++  M+ +   P VVT+  +++ +
Sbjct: 500 EMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVY 559

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           GK+G      E  ++MK  G+KP+S  Y +L++AY++ GL  +  +  R + +  +    
Sbjct: 560 GKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSL 619

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
              N +I+A+G+     +   +   MKE    PD +T+ T+++A
Sbjct: 620 LALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKA 663



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 145/329 (44%), Gaps = 2/329 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
             K   P +A  L  +  + GL        +++SA   SG   EA +   +++  S  KP
Sbjct: 279 FAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQ-SGIKP 337

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
               Y+ L+K   K       E +++EM   G+     TY+ +ID Y  A ++E      
Sbjct: 338 RTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVL 397

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E+G   P+ F  + +++ + + G  +K  +   E   +GVK D Q  N++  ++G+
Sbjct: 398 KEM-EAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGK 456

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               D   +  D M      P  VT+N +I+   K G     EE F+ M+ RG  P + T
Sbjct: 457 FNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATT 516

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  ++++Y        +  +L ++++  ++ +      ++  YG++G      E    MK
Sbjct: 517 YNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMK 576

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQN 332
                P +  +  +I AY   G++E A N
Sbjct: 577 SVGLKPSSTMYNALINAYAQRGLSEQAVN 605



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 137/292 (46%), Gaps = 4/292 (1%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--LIEKILA 89
           Y AL+ A  ++  +++A + I  M+     + D   YS++I+S T+ ++ D  ++ ++  
Sbjct: 200 YNALIGACARNNDIEKALNLIAKMRQ-DGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYK 258

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           E+    +E      N II G+ K+            M ++ G      TL S+ISA  +S
Sbjct: 259 EIERDKLELDVQLVNDIIMGFAKSGD-PSKALQLLGMAQATGLSAKTATLVSIISALADS 317

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G   + E  + E    G+K   +  N L K Y + G      S++  M+KR   P   TY
Sbjct: 318 GRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTY 377

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           +++I+ +  AG  E      K+M+   ++PNS  +  L++ +   G   K   +L+++++
Sbjct: 378 SLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKS 437

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             V  D  F+N +I  +G+   ++     F  M      PD +T+ T+I  +
Sbjct: 438 IGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 489



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 121/253 (47%), Gaps = 14/253 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG---LLDEAFSTINDMKSVSD 60
            GK    + A   F+ MLS+G++P    +  L+  + + G   + +E F  +        
Sbjct: 454 FGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER----RG 509

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P   TY+I+I S     R+D ++++L +M   GI  + VT+ T++D YGK+ +F +  
Sbjct: 510 CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAI 569

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNIL 177
                M +S G  P     N++I+AY   G  E+     N F +M   G+K  +  LN L
Sbjct: 570 ECLEEM-KSVGLKPSSTMYNALINAYAQRGLSEQA---VNAFRVMTSDGLKPSLLALNSL 625

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             ++G      +  +V+ +M++    P VVTY  +++   +    +K+   +++M   G 
Sbjct: 626 INAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGC 685

Query: 238 KPNSITYCSLVSA 250
           KP+      L SA
Sbjct: 686 KPDRKARSMLRSA 698



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 141/310 (45%), Gaps = 7/310 (2%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +Y+ L+ A G+S  L EAF  ++  ++++       TY+ LI +C + +  +    ++A+
Sbjct: 169 LYSILIHALGRSEKLYEAF-LLSQKQTLTPL-----TYNALIGACARNNDIEKALNLIAK 222

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           M   G +   V Y+ +I    ++ K +  M       +E      D+  +N +I  +  S
Sbjct: 223 MRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKS 282

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G+  K  +        G+ A   TL  +  +   +G   +  ++ + +++    P    Y
Sbjct: 283 GDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAY 342

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N +++ + K G ++  E    +M+ RG+ P+  TY  L+ AY  AG       +L+++E 
Sbjct: 343 NALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEA 402

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
            DV  ++  F+ +++ +   G+ +K  ++   MK     PD   +  +I  +      + 
Sbjct: 403 GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH 462

Query: 330 AQNLENKMIA 339
           A    ++M++
Sbjct: 463 AMTTFDRMLS 472


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 174/379 (45%), Gaps = 41/379 (10%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           +++ G C   + ++A  L ++M  DG    P V  YT +++ + + G LD+A+ T ++M 
Sbjct: 167 ILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEML 226

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
                 P+V TYS +I +  K    D   ++L  M   G+  +  TYN+I+ GY  + + 
Sbjct: 227 D-RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +E    F   + S G  PD+ T NS++     +G   +  K ++     G+K +I T   
Sbjct: 286 KE-AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L + Y   G   +M  ++D M +    P    ++I+I  + K G +++    F KM+ +G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 237 MKPNSITYCSLVSAYSKAGLIM-----------------------------------KVD 261
           + P+++TY +++    K+G +                                    K  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            ++ ++ +  + LDT FFN II ++ + G V +  +LF  M      PD IT++T+I  Y
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 322 NALGMTEAAQNLENKMIAM 340
              G  + A  L   M+++
Sbjct: 525 CLAGKMDEATKLLASMVSV 543



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 139/312 (44%), Gaps = 8/312 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA L+F  M   GL P    Y  ++    +SG +++A      M       P    Y+ 
Sbjct: 391 DQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID-ERLSPGNIVYNS 449

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S   F ++D  ++++ EM   GI    + +N+IID + K  +  E E  F  MV  G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PDI T +++I  Y  +G +++  K       +G+K D  T N L   Y +    +  
Sbjct: 510 -VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M+     P ++TYNI+++   +       +E +  +   G +    TY  ++  
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 251 YSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
             K  L    D  LR  +N   +D+ L+T  FN +I A  + G  ++  +LF  +     
Sbjct: 629 LCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGL 685

Query: 308 VPDNITFATMIQ 319
           VPD  T++ M +
Sbjct: 686 VPDVRTYSLMAE 697



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 139/287 (48%), Gaps = 3/287 (1%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEE 118
           C P+V++Y+IL+K     +R     ++L  M   G +C    V+Y T+I+G+ K    ++
Sbjct: 158 CIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDK 217

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
              ++  M++ G   P++ T +S+I+A   +  ++K  +        GV  + +T N + 
Sbjct: 218 AYGTYHEMLDRG-ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIV 276

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             Y  +G   +    +  M      P VVTYN +++   K G   +  + F  M  RG+K
Sbjct: 277 HGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLK 336

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P   TY +L+  Y+  G ++++  +L  +  + +  +   F+ +I AY + G V++   +
Sbjct: 337 PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLV 396

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           F  M+++   PD +T+ T+I      G  E A     +MI  + + G
Sbjct: 397 FSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 135/297 (45%), Gaps = 4/297 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   ML  G+      + +++ ++ + G + E+    + M  +   KPD+ TYS 
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKPDIITYST 519

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       + D   K+LA M  +G++   VTYNT+I+GY K  + E+    F  M ES 
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREM-ESS 578

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK- 189
           G  PDI T N ++     +      ++ Y      G + ++ T NI+     +  + D+ 
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEA 638

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +R   +         T  T+NI+I    K G  ++ ++ F  +   G+ P+  TY  +  
Sbjct: 639 LRMFQNLCLTDLQLETR-TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAE 697

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
              + GL+ ++D +   +E +    ++   N I+    Q GD+ + G     + E+H
Sbjct: 698 NLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKH 754



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 124/264 (46%), Gaps = 4/264 (1%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+    ++  LF++M+  G+KP +  Y+ L+  Y  +G +DEA   +  M SV   KPD
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG-MKPD 548

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ LI    K  R +    +  EM   G+    +TYN I+ G  + ++    +  + 
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 608

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + ESG    ++ T N ++     +   ++  + +    L  ++ + +T NI+  +  + 
Sbjct: 609 GITESG-TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 667

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D+ + +   +      P V TY+++ E   + G +E++++ F  M+  G   NS   
Sbjct: 668 GRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRML 727

Query: 245 CSLVSAYSKAGLIMKVDSILRQVE 268
            S+V    + G I +  + L  ++
Sbjct: 728 NSIVRKLLQRGDITRAGTYLFMID 751



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 134/333 (40%), Gaps = 7/333 (2%)

Query: 11  EQASLLFEVMLSDGLKPSV-DVYTALVSAYGQSGLLDEAFSTINDMK--SVSDCKPDVYT 67
           E A  +F+ +L  G   S+  +  AL      S     A S  N M      +  P++ T
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPA--AAVSRYNRMARAGADEVTPNLCT 93

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y IL+ SC    R DL    L  +   G    A+ +  ++ G    K+  +        +
Sbjct: 94  YGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRM 153

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG--VKADIQTLNILTKSYGRAG 185
              GC P++F+ N ++    +    ++  +        G     D+ +   +   + + G
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             DK       M  R   P VVTY+ +I    KA  ++K  E    M   G+ PN  TY 
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           S+V  Y  +G   +    L+++ +  V  D   +N ++    + G   +  ++F +M +R
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              P+  T+ T++Q Y   G       L + M+
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 366


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 158/344 (45%), Gaps = 37/344 (10%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LFE +   G+KP    Y AL+  Y ++G L +A S +++M+      PD +TYS+L
Sbjct: 293 EAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEK-RGVSPDEHTYSLL 351

Query: 72  IKSCTKFHRFDLIE-----------------------------------KILAEMSYLGI 96
           I +     R++                                      ++L EM  +G+
Sbjct: 352 IDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGV 411

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
           +     YN +ID +GK    +   ++F  M+ S G  PD  T N++I  +   G     E
Sbjct: 412 KPDRQFYNVVIDTFGKFNCLDHAMTTFDRML-SEGIEPDRVTWNTLIDCHCKHGRHIVAE 470

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           + +      G      T NI+  SYG    +D M+ ++  M+ +   P VVT+  +++ +
Sbjct: 471 EMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVY 530

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           GK+G      E  ++MK  G+KP+S  Y +L++AY++ GL  +  +  R + +  +    
Sbjct: 531 GKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSL 590

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
              N +I+A+G+     +   +   MKE    PD +T+ T+++A
Sbjct: 591 LALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKA 634



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 145/329 (44%), Gaps = 2/329 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
             K   P +A  L  +  + GL        +++SA   SG   EA +   +++  S  KP
Sbjct: 250 FAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQ-SGIKP 308

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
               Y+ L+K   K       E +++EM   G+     TY+ +ID Y  A ++E      
Sbjct: 309 RTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVL 368

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E+G   P+ F  + +++ + + G  +K  +   E   +GVK D Q  N++  ++G+
Sbjct: 369 KEM-EAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGK 427

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               D   +  D M      P  VT+N +I+   K G     EE F+ M+ RG  P + T
Sbjct: 428 FNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATT 487

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  ++++Y        +  +L ++++  ++ +      ++  YG++G      E    MK
Sbjct: 488 YNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMK 547

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQN 332
                P +  +  +I AY   G++E A N
Sbjct: 548 SVGLKPSSTMYNALINAYAQRGLSEQAVN 576



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 145/301 (48%), Gaps = 2/301 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A ++ + M +  ++P+  V++ L++ +   G   + F  + +MKS+   KPD   Y++
Sbjct: 362 ESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIG-VKPDRQFYNV 420

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I +  KF+  D        M   GIE   VT+NT+ID + K  +    E  F AM E  
Sbjct: 421 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAM-ERR 479

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC P   T N MI++YG+    + M++   +    G+  ++ T   L   YG++G ++  
Sbjct: 480 GCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDA 539

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              ++ M+     P+   YN +I  + + G  E+    F+ M   G+KP+ +   SL++A
Sbjct: 540 IECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINA 599

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + +     +  ++L+ ++ + V  D   +  ++ A  +    +K+  ++  M    C PD
Sbjct: 600 FGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPD 659

Query: 311 N 311
            
Sbjct: 660 R 660



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 137/292 (46%), Gaps = 4/292 (1%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--LIEKILA 89
           Y AL+ A  ++  +++A + I  M+     + D   YS++I+S T+ ++ D  ++ ++  
Sbjct: 171 YNALIGACARNNDIEKALNLIAKMRQ-DGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYK 229

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           E+    +E      N II G+ K+            M ++ G      TL S+ISA  +S
Sbjct: 230 EIERDKLELDVQLVNDIIMGFAKSGD-PSKALQLLGMAQATGLSAKTATLVSIISALADS 288

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G   + E  + E    G+K   +  N L K Y + G      S++  M+KR   P   TY
Sbjct: 289 GRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTY 348

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           +++I+ +  AG  E      K+M+   ++PNS  +  L++ +   G   K   +L+++++
Sbjct: 349 SLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKS 408

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             V  D  F+N +I  +G+   ++     F  M      PD +T+ T+I  +
Sbjct: 409 IGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 460



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 121/253 (47%), Gaps = 14/253 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG---LLDEAFSTINDMKSVSD 60
            GK    + A   F+ MLS+G++P    +  L+  + + G   + +E F  +        
Sbjct: 425 FGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER----RG 480

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P   TY+I+I S     R+D ++++L +M   GI  + VT+ T++D YGK+ +F +  
Sbjct: 481 CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAI 540

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNIL 177
                M +S G  P     N++I+AY   G  E+     N F +M   G+K  +  LN L
Sbjct: 541 ECLEEM-KSVGLKPSSTMYNALINAYAQRGLSEQA---VNAFRVMTSDGLKPSLLALNSL 596

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             ++G      +  +V+ +M++    P VVTY  +++   +    +K+   +++M   G 
Sbjct: 597 INAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGC 656

Query: 238 KPNSITYCSLVSA 250
           KP+      L SA
Sbjct: 657 KPDRKARSMLRSA 669



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 141/310 (45%), Gaps = 7/310 (2%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +Y+ L+ A G+S  L EAF  ++  ++++       TY+ LI +C + +  +    ++A+
Sbjct: 140 LYSILIHALGRSEKLYEAF-LLSQKQTLTPL-----TYNALIGACARNNDIEKALNLIAK 193

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           M   G +   V Y+ +I    ++ K +  M       +E      D+  +N +I  +  S
Sbjct: 194 MRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKS 253

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G+  K  +        G+ A   TL  +  +   +G   +  ++ + +++    P    Y
Sbjct: 254 GDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAY 313

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N +++ + K G ++  E    +M+ RG+ P+  TY  L+ AY  AG       +L+++E 
Sbjct: 314 NALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEA 373

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
            DV  ++  F+ +++ +   G+ +K  ++   MK     PD   +  +I  +      + 
Sbjct: 374 GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH 433

Query: 330 AQNLENKMIA 339
           A    ++M++
Sbjct: 434 AMTTFDRMLS 443


>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
 gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
          Length = 1429

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 162/343 (47%), Gaps = 7/343 (2%)

Query: 2   VMLGKCKQPEQASLLFEVML--SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
            +LG   +  Q SL  E+       +   V VY A++  Y +SG   +A   ++ M+   
Sbjct: 196 AILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELLDAMRQ-R 254

Query: 60  DCKPDVYTYSILIKSCTKFHRF--DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            C PD+ +++ LI +  K      +L+ ++L  +   G+   A+TYNT++    +    E
Sbjct: 255 GCVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNSGLRPDAITYNTLLSACSRDSNLE 314

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
                F  M E+  C PD++T N+MIS YG  G   + E+ + E  L G   D  T N L
Sbjct: 315 GAVKVFEDM-EAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIELELKGFSPDAVTYNSL 373

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RG 236
             ++ R    +K++ V   MQK  F    +TYN +I  +GK G ++   + +K MK   G
Sbjct: 374 LYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSG 433

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             P++ITY  L+ +  KA   ++  +++ ++ +  +      ++ +I  Y +AG  E+  
Sbjct: 434 RNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAE 493

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           + F  M      PDN+ ++ M+        T  A  L   MI+
Sbjct: 494 DTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRDMIS 536



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 135/311 (43%), Gaps = 7/311 (2%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-LLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +A  L + M   G  P +  +  L++A  +SG L       + DM   S  +PD  TY+ 
Sbjct: 243 KAQELLDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVVELLDMVRNSGLRPDAITYNT 302

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +C++    +   K+  +M     +    TYN +I  YG+     E E  F  + E  
Sbjct: 303 LLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIEL-ELK 361

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD-- 188
           G  PD  T NS++ A+    N EK+++ Y +   MG   D  T N +   YG+ G  D  
Sbjct: 362 GFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421

Query: 189 -KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            ++   M  +  R   P  +TY ++I++ GKA    +      +M   G+KP   TY +L
Sbjct: 422 LQLYKDMKGLSGRN--PDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSAL 479

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  Y+KAG   + +     +  S    D   ++ ++    +  +  K   L+  M     
Sbjct: 480 ICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRDMISDGH 539

Query: 308 VPDNITFATMI 318
            P +  +  MI
Sbjct: 540 TPSHSLYELMI 550



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 135/310 (43%), Gaps = 36/310 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +AS +F  +   G +PS  V  ++V  Y + G  + A+  +N                  
Sbjct: 699 EASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQ----------------- 741

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
                            AE       CS + Y  II+ YGK K +++ ES    + +SG 
Sbjct: 742 -----------------AETKGFHFACSPM-YTDIIEAYGKLKLWQKAESVVGNLRQSGR 783

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+ T NS++SAY   G  E+    +N     G    ++++N L  +    G  +++ 
Sbjct: 784 T-PDLKTWNSLMSAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELY 842

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V++ +Q   F  +  +  ++++ F +AG+I ++ + +  MK  G  P    Y  ++   
Sbjct: 843 VVVEELQDMGFKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELL 902

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K   +   + ++ ++E ++  ++   +N ++  Y    D +K  +++  +KE    PD 
Sbjct: 903 CKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDE 962

Query: 312 ITFATMIQAY 321
            T+ T+I  Y
Sbjct: 963 TTYNTLIIMY 972



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 147/340 (43%), Gaps = 6/340 (1%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            GK K  ++A  +   +   G  P +  + +L+SAY + G  + A +  N M       P 
Sbjct: 763  GKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECGCYERARAIFNTMMR-DGPSPT 821

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            V + + L+ +     R + +  ++ E+  +G + S  +   ++D + +A    E+   +S
Sbjct: 822  VESINKLLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVNKIYS 881

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +M ++ G  P I     MI        +   E   +E      K ++   N + K Y   
Sbjct: 882  SM-KAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTVI 940

Query: 185  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              Y K   V   +++    P   TYN +I  + +    E+     ++M++ G+ P   TY
Sbjct: 941  EDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYSLMQQMRNLGLDPKLDTY 1000

Query: 245  CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             SL+SA+ K   + + + +  ++ +  + LD  F++ ++     +G   K  +L   MK 
Sbjct: 1001 KSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN 1060

Query: 305  RHCVPDNITFATMIQAYNALGMTEAAQ----NLENKMIAM 340
                P   T   ++ +Y++ G  + A+    NL+N  + +
Sbjct: 1061 AGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVEL 1100



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 149/355 (41%), Gaps = 37/355 (10%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            M    +C   E+A  +F  M+ DG  P+V+    L+ A    G L+E +  + +++ +  
Sbjct: 794  MSAYAECGCYERARAIFNTMMRDGPSPTVESINKLLHALCVDGRLEELYVVVEELQDMG- 852

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             K    +  +++ +  +      + KI + M   G   +   Y  +I+   K K+  + E
Sbjct: 853  FKISKSSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAE 912

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
               S M E      ++   NSM+  Y    + +K  + Y      G++ D  T N L   
Sbjct: 913  IMVSEM-EEANFKVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIM 971

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK--------- 231
            Y R    ++  S+M  M+     P + TY  +I  FGK   +E+ E+ F++         
Sbjct: 972  YCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031

Query: 232  --------------------------MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
                                      MK+ G++P   T   L+ +YS +G   + + +L 
Sbjct: 1032 RSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLS 1091

Query: 266  QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             ++N++V L T  ++ +I AY ++ D +   E  L MK+    PD+  +   ++A
Sbjct: 1092 NLKNTEVELTTLPYSSVIDAYLRSKDYKSGIERLLEMKKEGLEPDHRIWTCFVRA 1146



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 1/258 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  +FE M +   +P +  Y A++S YG+ GL  EA     +++ +    PD  TY+ 
Sbjct: 314 EGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIELE-LKGFSPDAVTYNS 372

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +    + ++++  +M  +G     +TYNTII  YGK  + +     +  M    
Sbjct: 373 LLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLS 432

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G +PD  T   +I + G +    +     +E   +G+K  +QT + L   Y +AG  ++ 
Sbjct: 433 GRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEA 492

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
                 M +    P  + Y+++++   +     K    ++ M   G  P+   Y  ++  
Sbjct: 493 EDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWVLYRDMISDGHTPSHSLYELMILG 552

Query: 251 YSKAGLIMKVDSILRQVE 268
             K      V   +R +E
Sbjct: 553 LMKENRSDDVQKTIRDME 570



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 89/172 (51%), Gaps = 2/172 (1%)

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK--MEEY 228
           +Q  N +   Y R+G + K + ++D M++R   P ++++N +I    K+G +    + E 
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELLDAMRQRGCVPDLISFNTLINARLKSGGLTPNLVVEL 284

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
              +++ G++P++ITY +L+SA S+   +     +   +E      D   +N +IS YG+
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGR 344

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            G   +   LF+ ++ +   PD +T+ +++ A+     TE  + +  +M  M
Sbjct: 345 CGLAAEAERLFIELELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM 396



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 152/373 (40%), Gaps = 44/373 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  +  +A+ L   ML  G+KP++  Y+AL+  Y ++G  +EA  T + M   S  KP
Sbjct: 448 LGKANRSVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLR-SGTKP 506

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   YS+++    + +       +  +M   G   S   Y  +I G  K  + ++++ + 
Sbjct: 507 DNLAYSVMLDVLLRGNETRKAWVLYRDMISDGHTPSHSLYELMILGLMKENRSDDVQKTI 566

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E  G +P    ++S++   G   ++   +      N  G + +  TL  +  SY  
Sbjct: 567 RDMEELCGMNP--LEISSVL-VKGECFDLAARQLKVAITN--GYELENDTLLSILGSYSS 621

Query: 184 AGMYDKMRSVMDFMQ------KRFFFPTVVTYNIVIETFGKA------------------ 219
           +G + +   +++F++      KR     ++  +  +   G A                  
Sbjct: 622 SGRHSEAFELLEFLKEHASGSKRLINEALIVLHCKVNNIGAALDEYLADPCVHGWCFGGS 681

Query: 220 -------------GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
                         H  +  + F +++  G +P+     S+V  Y K G       ++ Q
Sbjct: 682 TMYETLLHCCVANEHYAEASQVFSELRLSGCEPSESVCKSMVVVYCKLGFPETAYQVVNQ 741

Query: 267 VENSDVILD-TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            E        +P +  II AYG+    +K   +   +++    PD  T+ +++ AY   G
Sbjct: 742 AETKGFHFACSPMYTDIIEAYGKLKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAECG 801

Query: 326 MTEAAQNLENKMI 338
             E A+ + N M+
Sbjct: 802 CYERARAIFNTMM 814


>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 426

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRXEEA 339



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG   +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRXEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 142/340 (41%), Gaps = 39/340 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S   +M+ +  C 
Sbjct: 88  VFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIK-CL 146

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 147 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 206

Query: 123 FSAM----------------------------------VESGGCHPDIFTLNSMISAYGN 148
           F  M                                  +++ G  P+  T +++IS +G 
Sbjct: 207 FRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGK 266

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G +++    + +    GV  D      +  +Y RAG+    + ++  +++    P  + 
Sbjct: 267 VGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELKR----PDNIP 322

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
            +I I     AG  E+    F++    G   +   +  ++  +SK      V  +  ++ 
Sbjct: 323 RDIAIHILAGAGRXEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMR 382

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                 D+     +++AYG+  + +K  ++++ M+E  CV
Sbjct: 383 GLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVGCV 422



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 174/379 (45%), Gaps = 41/379 (10%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           +++ G C   + ++A  L ++M  DG    P V  YT +++ + + G LD+A+ T ++M 
Sbjct: 167 ILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEML 226

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
                 P+V TYS +I +  K    D   ++L  M   G+  +  TYN+I+ GY  + + 
Sbjct: 227 D-RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +E    F   + S G  PD+ T NS++     +G   +  K ++     G+K +I T   
Sbjct: 286 KE-AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L + Y   G   +M  ++D M +    P    ++I+I  + K G +++    F KM+ +G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 237 MKPNSITYCSLVSAYSKAGLIM-----------------------------------KVD 261
           + P+++TY +++    K+G +                                    K  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            ++ ++ +  + LDT FFN II ++ + G V +  +LF  M      PD IT++T+I  Y
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 322 NALGMTEAAQNLENKMIAM 340
              G  + A  L   M+++
Sbjct: 525 CLAGKMDEATKLLASMVSV 543



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 159/349 (45%), Gaps = 6/349 (1%)

Query: 2   VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++G C    +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKF 116
             C P+V++Y+IL+K     +R     ++L  M   G +C    V+Y T+I+G+ K    
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           ++   ++  M++ G   P++ T +S+I+A   +  ++K  +        GV  + +T N 
Sbjct: 216 DKAYGTYHEMLDRG-ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +   Y  +G   +    +  M      P VVTYN +++   K G   +  + F  M  RG
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           +KP   TY +L+  Y+  G ++++  +L  +  + +  +   F+ +I AY + G V++  
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            +F  M+++   PD +T+ T+I      G  E A     +MI  + + G
Sbjct: 395 LVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 139/312 (44%), Gaps = 8/312 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA L+F  M   GL P    Y  ++    +SG +++A      M       P    Y+ 
Sbjct: 391 DQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID-ERLSPGNIVYNS 449

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S   F ++D  ++++ EM   GI    + +N+IID + K  +  E E  F  MV  G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PDI T +++I  Y  +G +++  K       +G+K D  T N L   Y +    +  
Sbjct: 510 -VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M+     P ++TYNI+++   +       +E +  +   G +    TY  ++  
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 251 YSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
             K  L    D  LR  +N   +D+ L+T  FN +I A  + G  ++  +LF  +     
Sbjct: 629 LCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGL 685

Query: 308 VPDNITFATMIQ 319
           VPD  T++ M +
Sbjct: 686 VPDVRTYSLMAE 697



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 135/297 (45%), Gaps = 4/297 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   ML  G+      + +++ ++ + G + E+    + M  +   KPD+ TYS 
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKPDIITYST 519

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       + D   K+LA M  +G++   VTYNT+I+GY K  + E+    F  M ES 
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREM-ESS 578

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK- 189
           G  PDI T N ++     +      ++ Y      G + ++ T NI+     +  + D+ 
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEA 638

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +R   +         T  T+NI+I    K G  ++ ++ F  +   G+ P+  TY  +  
Sbjct: 639 LRMFQNLCLTDLQLETR-TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAE 697

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
              + GL+ ++D +   +E +    ++   N I+    Q GD+ + G     + E+H
Sbjct: 698 NLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKH 754



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 122/260 (46%), Gaps = 4/260 (1%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+    ++  LF++M+  G+KP +  Y+ L+  Y  +G +DEA   +  M SV   KPD
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG-MKPD 548

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ LI    K  R +    +  EM   G+    +TYN I+ G  + ++    +  + 
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 608

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + ESG    ++ T N ++     +   ++  + +    L  ++ + +T NI+  +  + 
Sbjct: 609 GITESG-TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 667

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D+ + +   +      P V TY+++ E   + G +E++++ F  M+  G   NS   
Sbjct: 668 GRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRML 727

Query: 245 CSLVSAYSKAGLIMKVDSIL 264
            S+V    + G I +  + L
Sbjct: 728 NSIVRKLLQRGDITRAGTYL 747


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 158/332 (47%), Gaps = 1/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + E+A  LFE M   G  P+V  YT L+   G++G +DEA+    DM       PDV
Sbjct: 280 KVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLR-DGLTPDV 338

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
              + L+    K  R + +  + +EM       + V+YNT+I    ++K      SS+  
Sbjct: 339 VFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFD 398

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
            +++    P  FT + +I  Y  +  +EK      E +  G          L  + G+A 
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            Y+    +   +++ F   +   Y ++I+ FGK G + +  + F +MK++G  P+   Y 
Sbjct: 459 RYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYN 518

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L+S   KAG+I + +S+LR++E +    D    N I++ + + G   +  E+F T+K  
Sbjct: 519 ALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHS 578

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              PD +T+ T++  +   GM E A  +  +M
Sbjct: 579 GIKPDGVTYNTLLGCFAHAGMFEEAARMMREM 610



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 152/335 (45%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ K   +A  +F        KP+   Y +++    Q G  ++      +M +  DC P
Sbjct: 172 LGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFP 231

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TYS LI S  K  R D   ++  EM    ++ +   Y T++  Y K  K E+    F
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M +  GC P ++T   +I   G +G +++   +Y +    G+  D+  LN L    G+
Sbjct: 292 EEM-KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGK 350

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            G  +++ +V   M      PTVV+YN VI+  F    H+ ++  +F KMK   + P+  
Sbjct: 351 VGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEF 410

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+  Y K   + K   +L +++          +  +I+A G+A   E   ELF  +
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKEL 470

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           KE      +  +A MI+ +   G    A +L N+M
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 6/296 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVS 59
           M +LGK  + E+ + +F  M      P+V  Y  ++ A  +S   + E  S  + MK+ S
Sbjct: 345 MNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADS 404

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P  +TYSILI    K +R +    +L EM   G       Y ++I+  GKAK++E  
Sbjct: 405 -VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAA 463

Query: 120 ESSFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
              F  + E+ G     ++ +  MI  +G  G + +    +NE    G   D+   N L 
Sbjct: 464 NELFKELKENFGNVSSRVYAV--MIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALM 521

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               +AGM ++  S++  M++      + ++NI++  F + G   +  E F+ +KH G+K
Sbjct: 522 SGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIK 581

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           P+ +TY +L+  ++ AG+  +   ++R++++     D   ++ I+ A G   D EK
Sbjct: 582 PDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNV-DHEK 636



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 7/261 (2%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEM---SYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           D  TY  LI+   +   +  + + + E+   +Y+ +  S    + ++   G+AK   +  
Sbjct: 125 DCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSV--SPAVLSELVKALGRAKMVSKAL 182

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTK 179
           S F    +   C P   T NS+I      G  EK+ + Y E  N      D  T + L  
Sbjct: 183 SVF-YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALIS 241

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           SY + G  D    + D M+     PT   Y  ++  + K G +EK  + F++MK  G  P
Sbjct: 242 SYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSP 301

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
              TY  L+    KAG + +     + +    +  D  F N +++  G+ G VE++  +F
Sbjct: 302 TVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVF 361

Query: 300 LTMKERHCVPDNITFATMIQA 320
             M    C P  +++ T+I+A
Sbjct: 362 SEMGMWRCTPTVVSYNTVIKA 382



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 7/169 (4%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           L+ L K+ GRA M  K  SV    + R   PT  TYN VI    + G  EK+ E + +M 
Sbjct: 165 LSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMC 224

Query: 234 HRG-MKPNSITYCSLVSAYSKAGLIMKVDSILR---QVENSDVILDTPFFNCIISAYGQA 289
           + G   P++ITY +L+S+Y K G   + DS +R   +++++ +      +  ++  Y + 
Sbjct: 225 NEGDCFPDTITYSALISSYEKLG---RNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKV 281

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           G VEK  +LF  MK   C P   T+  +I+     G  + A      M+
Sbjct: 282 GKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 34/154 (22%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------ 57
            GKC +  +A  LF  M + G  P V  Y AL+S   ++G+++EA S +  M+       
Sbjct: 489 FGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRAD 548

Query: 58  ----------------------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
                                        S  KPD  TY+ L+        F+   +++ 
Sbjct: 549 INSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMR 608

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           EM   G E  A+TY++I+D  G     ++  SSF
Sbjct: 609 EMKDKGFEYDAITYSSILDAVGNVDHEKDDVSSF 642


>gi|255661142|gb|ACU25740.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 426

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 57
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 58  --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTM 123

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV     + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 152/337 (45%), Gaps = 10/337 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S   +M+ +  C 
Sbjct: 88  VFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYVENKKFLEALSVFAEMREIK-CL 146

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 147 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 206

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +      ++ T NSM+  YG +   EK      E    G++ +  T + +   +G
Sbjct: 207 FRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWG 265

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + G  D  R+ M F + R     +  V Y  +I  + +AG +     + K++ H   +P+
Sbjct: 266 KVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVA----HAKRLLHELKRPD 319

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +I     +   + AG I +   + RQ  ++  + D   F  +I  + +      + E+F 
Sbjct: 320 NIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFD 379

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 380 KMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/362 (20%), Positives = 152/362 (41%), Gaps = 74/362 (20%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P   +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPTTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G+  + + Y +++ AY 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 253 K-------------------------------AGLIMKVDSILRQVENSDVILDTPFFN- 280
           +                               AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 281 ----------------------------------CIISAYGQAGDVEKMGELFLTMKERH 306
                                              I++AYG+  + +K  ++++ M+E  
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEMQEVG 420

Query: 307 CV 308
           CV
Sbjct: 421 CV 422



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V   T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 162/358 (45%), Gaps = 42/358 (11%)

Query: 2   VMLGKCKQPEQASLLFEVMLS-DGLKPSVDVYTALVSAYGQSGLLDEA------------ 48
           V+LG   +  Q S+  EV L   G   +V V+ A++  Y +SG  D+A            
Sbjct: 193 VVLGVLGRARQDSIAEEVFLRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGI 252

Query: 49  ------FSTINDMKSVSDC------------------KPDVYTYSILIKSCTKFHRFDLI 84
                 F+T+ + +S S C                  +PDV TY+ LI +C++    +  
Sbjct: 253 DPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDA 312

Query: 85  EKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
             +  EM  +  EC     TYN ++  +G+  K EE E  F  +VE G   PD  T NS+
Sbjct: 313 VTVFEEM--IASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKG-FMPDAVTYNSL 369

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           + A+   GN++K+E    E    G K +  T N +   YG+ G  D    + D M+    
Sbjct: 370 LYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGC 429

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P  VTY ++I++ GK   I +  +  + M   G+KP  + + +L+ AY+K G     + 
Sbjct: 430 TPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALICAYAKGGRRADAEK 489

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
               +  S V  D   +  ++  + ++G+ EKM  L+ TM   +  PD+  +  ++ A
Sbjct: 490 TFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVLLVA 547



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 146/289 (50%), Gaps = 3/289 (1%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 74
           LLFEV  S GL+P V  Y  L+SA  QS  L++A +   +M + S+C+PD++TY+ ++  
Sbjct: 280 LLFEVRQS-GLRPDVITYNTLISACSQSSNLEDAVTVFEEMIA-SECRPDLWTYNAMVSV 337

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             +  + +  E++  E+   G    AVTYN+++  + K    +++E +   +V++G    
Sbjct: 338 HGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKN 397

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           +I T N+MI  YG  G ++     Y+E   +G   D  T  ++  S G+     +   V+
Sbjct: 398 EI-TYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVL 456

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + M      PT+V ++ +I  + K G     E+ F  M   G+KP+ + Y  ++  ++++
Sbjct: 457 EDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARS 516

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           G   K+  + R + N +   D   +  ++ A  +    E++ E+   M+
Sbjct: 517 GETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDME 565



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 152/337 (45%), Gaps = 11/337 (3%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPS--VD--VYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            G  K  +QA +L +     GL+ +  +D  ++ AL+ AY +SGL ++A +  ++M     
Sbjct: 757  GNIKLWQQAEILVK-----GLRQASGIDRRIWNALIHAYAESGLYEKARAVFDNMIKTGP 811

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
              P V + + ++++     R D +  ++ E+  +  + S  T   ++D + KA    E+ 
Sbjct: 812  L-PTVDSVNGMMRALIVDGRLDELYVVVGELQDMDFKISKSTVLLMLDAFAKAGDVFEVM 870

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              ++ M ++ G  P++    SM S   +      +E    E    G K D+   N L   
Sbjct: 871  KIYNGM-KAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNM 929

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            Y  AG +D+   V   + +    P   TYN +I  + ++   E+      +M  RG+ P 
Sbjct: 930  YTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPK 989

Query: 241  SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
              +Y SL++A +KA L  + D +  ++ +    L+   ++ ++  Y  AG+  K   L  
Sbjct: 990  LQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLA 1049

Query: 301  TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             MKE    P   T   ++ +Y   G    A+N+ N +
Sbjct: 1050 VMKEDGIEPTIATMHILMTSYGTAGQPHEAENVLNSL 1086



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 152/345 (44%), Gaps = 37/345 (10%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK-------- 62
            E+A  +F+ M+  G  P+VD    ++ A    G LDE +  + +++ + D K        
Sbjct: 797  EKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDM-DFKISKSTVLL 855

Query: 63   ---------------------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 95
                                       P+++ Y  +       +RF  +E ++AEM   G
Sbjct: 856  MLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEMEGAG 915

Query: 96   IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
             +     +N++++ Y  A  F+     + +++E+G   PD  T N++I  Y  S   E+ 
Sbjct: 916  FKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAG-LEPDEDTYNTLIVMYCRSLRPEEG 974

Query: 156  EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
                NE    G+   +Q+   L  +  +A + ++   + + M+ + +      Y+++++ 
Sbjct: 975  FTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKI 1034

Query: 216  FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
            +  AG+  K E     MK  G++P   T   L+++Y  AG   + +++L  +++S + + 
Sbjct: 1035 YRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPHEAENVLNSLKSSSLEVS 1094

Query: 276  TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            T  ++ +  AY + GD +   +  L MK     PD+  +   I+A
Sbjct: 1095 TLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVEPDHQVWTCFIRA 1139



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 94/216 (43%), Gaps = 37/216 (17%)

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G  A +Q  N +   Y R+G +D  R ++D M  R   P +V++N +I    K+G 
Sbjct: 212 LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGC 271

Query: 222 IEK--MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           +      +   +++  G++P+ ITY +L+SA S++  +    ++  ++  S+   D   +
Sbjct: 272 LAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTY 331

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPD----------------------------- 310
           N ++S +G+ G  E+   LF  + E+  +PD                             
Sbjct: 332 NAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVK 391

Query: 311 ------NITFATMIQAYNALGMTEAAQNLENKMIAM 340
                  IT+ TMI  Y  +G  + A  L ++M A+
Sbjct: 392 AGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAV 427



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 125/310 (40%), Gaps = 46/310 (14%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y  LI    +   F    ++  +M ++GIE S   Y +II  Y K    E         +
Sbjct: 678 YEHLITCLVEAELFSEACQVFCDMQFIGIEASKNIYESIISTYCKLGFPETAHGLMDDAL 737

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN-EFNLMGVKA----DIQTLNILTKSYG 182
           +SG     +     +I AYGN      ++ W   E  + G++     D +  N L  +Y 
Sbjct: 738 QSGIPLNILSCRVIIIEAYGN------IKLWQQAEILVKGLRQASGIDRRIWNALIHAYA 791

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYN-------------------------------- 210
            +G+Y+K R+V D M K    PTV + N                                
Sbjct: 792 ESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDMDFKISKS 851

Query: 211 ---IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
              ++++ F KAG + ++ + +  MK  G  PN   Y S+ S          V+ ++ ++
Sbjct: 852 TVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEM 911

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           E +    D   FN +++ Y  AG+ ++  +++ ++ E    PD  T+ T+I  Y      
Sbjct: 912 EGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRP 971

Query: 328 EAAQNLENKM 337
           E    L N+M
Sbjct: 972 EEGFTLLNEM 981



 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 131/325 (40%), Gaps = 12/325 (3%)

Query: 1   MVML---GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           +VML    +  + E+   L+  M++D  +P  D+Y  L+ A  +    +E    I DM+ 
Sbjct: 507 LVMLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDMEL 566

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           +      V + +ILIK+        L++K   +    G +  A +  +I++ Y   +K E
Sbjct: 567 LCQMSLGVIS-TILIKARCVSQGGKLLKKACLQ----GYKPDAKSLWSIMNAYVMTEKHE 621

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E  S    + +      D+ +  S+I       +I   E++     L     +      L
Sbjct: 622 EGLSLLECIRDHVSSSQDLISECSIILLCRKQTSISAYEQYSQRLMLKYPGQNCNLYEHL 681

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                 A ++ +   V   MQ      +   Y  +I T+ K G  E            G+
Sbjct: 682 ITCLVEAELFSEACQVFCDMQFIGIEASKNIYESIISTYCKLGFPETAHGLMDDALQSGI 741

Query: 238 KPNSITYCS--LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            P +I  C   ++ AY    L  + + +++ +  +  I D   +N +I AY ++G  EK 
Sbjct: 742 -PLNILSCRVIIIEAYGNIKLWQQAEILVKGLRQASGI-DRRIWNALIHAYAESGLYEKA 799

Query: 296 GELFLTMKERHCVPDNITFATMIQA 320
             +F  M +   +P   +   M++A
Sbjct: 800 RAVFDNMIKTGPLPTVDSVNGMMRA 824


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 174/379 (45%), Gaps = 41/379 (10%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           +++ G C   + ++A  L ++M  DG    P V  YT +++ + + G LD+A+ T ++M 
Sbjct: 167 ILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEML 226

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
                 P+V TYS +I +  K    D   ++L  M   G+  +  TYN+I+ GY  + + 
Sbjct: 227 D-RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +E    F   + S G  PD+ T NS++     +G   +  K ++     G+K +I T   
Sbjct: 286 KE-AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L + Y   G   +M  ++D M +    P    ++I+I  + K G +++    F KM+ +G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 237 MKPNSITYCSLVSAYSKAGLIM-----------------------------------KVD 261
           + P+++TY +++    K+G +                                    K  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            ++ ++ +  + LDT FFN II ++ + G V +  +LF  M      PD IT++T+I  Y
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 322 NALGMTEAAQNLENKMIAM 340
              G  + A  L   M+++
Sbjct: 525 CLAGKMDEATKLLASMVSV 543



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 159/349 (45%), Gaps = 6/349 (1%)

Query: 2   VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++G C    +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKF 116
             C P+V++Y+IL+K     +R     ++L  M   G +C    V+Y T+I+G+ K    
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           ++   ++  M++ G   P++ T +S+I+A   +  ++K  +        GV  + +T N 
Sbjct: 216 DKAYGTYHEMLDRG-ILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +   Y  +G   +    +  M      P VVTYN +++   K G   +  + F  M  RG
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           +KP   TY +L+  Y+  G ++++  +L  +  + +  +   F+ +I AY + G V++  
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            +F  M+++   PD +T+ T+I      G  E A     +MI  + + G
Sbjct: 395 LVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 139/312 (44%), Gaps = 8/312 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA L+F  M   GL P    Y  ++    +SG +++A      M       P    Y+ 
Sbjct: 391 DQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID-ERLSPGNIVYNS 449

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S   F ++D  ++++ EM   GI    + +N+IID + K  +  E E  F  MV  G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PDI T +++I  Y  +G +++  K       +G+K D  T N L   Y +    +  
Sbjct: 510 -VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M+     P ++TYNI+++   +       +E +  +   G +    TY  ++  
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 251 YSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
             K  L    D  LR  +N   +D+ L+T  FN +I A  + G  ++  +LF  +     
Sbjct: 629 LCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGL 685

Query: 308 VPDNITFATMIQ 319
           VPD  T++ M +
Sbjct: 686 VPDVRTYSLMAE 697



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 135/297 (45%), Gaps = 4/297 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   ML  G+      + +++ ++ + G + E+    + M  +   KPD+ TYS 
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKPDIITYST 519

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       + D   K+LA M  +G++   VTYNT+I+GY K  + E+    F  M ES 
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREM-ESS 578

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK- 189
           G  PDI T N ++     +      ++ Y      G + ++ T NI+     +  + D+ 
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEA 638

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +R   +         T  T+NI+I    K G  ++ ++ F  +   G+ P+  TY  +  
Sbjct: 639 LRMFQNLCLTDLQLETR-TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAE 697

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
              + GL+ ++D +   +E +    ++   N I+    Q GD+ + G     + E+H
Sbjct: 698 NLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKH 754



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 124/264 (46%), Gaps = 4/264 (1%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+    ++  LF++M+  G+KP +  Y+ L+  Y  +G +DEA   +  M SV   KPD
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG-MKPD 548

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ LI    K  R +    +  EM   G+    +TYN I+ G  + ++    +  + 
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 608

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + ESG    ++ T N ++     +   ++  + +    L  ++ + +T NI+  +  + 
Sbjct: 609 GITESG-TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 667

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D+ + +   +      P V TY+++ E   + G +E++++ F  M+  G   NS   
Sbjct: 668 GRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRML 727

Query: 245 CSLVSAYSKAGLIMKVDSILRQVE 268
            S+V    + G I +  + L  ++
Sbjct: 728 NSIVRKLLQRGDITRAGTYLFMID 751


>gi|410110081|gb|AFV61120.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           camara]
          Length = 381

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 22  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVXPNTTSYSTL 80

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 81  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 139

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 140 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 259

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 260 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 299



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 63  SEM-KTAGVXPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 121

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 122 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 181

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D I F TMI AY   G+   A+ L +++
Sbjct: 242 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 275



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 26  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVXPNTTSYSTLLTMY 84

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 85  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 143

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 144 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANN 200

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 201 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 260

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 261 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 320

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+     ++ AY  L   + A ++  +M
Sbjct: 321 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVITVVLNAYGKLQEFDKANDVYMEM 376



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 31/262 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 120 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 178

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ +I    K    +    ++ EM   GIE +++TY+TII  +GK  K       F+
Sbjct: 179 VVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 238

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        F  M+   E  G              PD    ++ I     +G IE+
Sbjct: 239 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEE 298

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +     +   Y  +  V D M+   +FP      +V+ 
Sbjct: 299 ATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVITVVLN 358

Query: 215 TFGKAGHIEKMEEYFKKMKHRG 236
            +GK    +K  + + +M+  G
Sbjct: 359 AYGKLQEFDKANDVYMEMQEVG 380


>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 425

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  S+   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     I AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 426

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      +  +F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVVVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171



 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  + ++A++LF+ + S G+     +Y  ++ AY ++GL+  A   ++++K     +
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHELK-----R 317

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD     I I       R +    +  +    G       +  +I  + K KK+  +   
Sbjct: 318 PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVVV 377

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           F  M    G  PD   +  +++AYG     +K    Y E   +G
Sbjct: 378 FDKM-RGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 426

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDIXVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 158/335 (47%), Gaps = 3/335 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  +PE A   F  +L  GL+  + +   L+  + ++   DEA   +        C PDV
Sbjct: 123 RAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDV 182

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSF 123
           ++YSIL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K     +    F
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLF 242

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+  G  PD  T +S++ A   +  ++K E +  +    GV  +  T N L   Y  
Sbjct: 243 KEMVQR-GIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSS 301

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +   V   M+++   P VVT+N+++ +  K G I++  + F  M  +G  P+  +
Sbjct: 302 TGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 361

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +++ Y+  G ++ +  +   +    +      FN +I AY   G ++K   +F  M+
Sbjct: 362 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMR 421

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +    P+ +T+ T+I A   +G  + A    N+MI
Sbjct: 422 DHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMI 456



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 152/328 (46%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF+ M+  G+ P    Y+++V A  ++  +D+A + +  M +     P+ +TY+ L
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVN-KGVLPNNWTYNNL 295

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I   +   ++    ++  EM    I    VT+N ++    K  K +E    F  M   G 
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQ 355

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
            +PD+F+ N M++ Y   G +  M   ++     G+   I T N+L K+Y   GM DK  
Sbjct: 356 -NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAM 414

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + + M+     P V+TY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 415 IIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 474

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G ++K   ++ ++ N+ + LD   F+ II+   + G V     +F         P  
Sbjct: 475 CTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTA 534

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
           + ++ ++  Y  +G  E A  + + M++
Sbjct: 535 VVYSMLMDGYCLVGKMEKALRVFDAMVS 562



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 142/324 (43%), Gaps = 4/324 (1%)

Query: 12  QASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           QA  L  +M   G    P V  Y  ++  + + G +++A     +M       PD  TYS
Sbjct: 200 QADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ-RGIPPDFVTYS 258

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            ++ +  K    D  E  L +M   G+  +  TYN +I GY    +++E    F  M   
Sbjct: 259 SVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM-RR 317

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
               PD+ T N ++ +    G I++    ++   + G   D+ + NI+   Y   G    
Sbjct: 318 QSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVD 377

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           M  + D M      P + T+N++I+ +   G ++K    F +M+  G+KPN +TY ++++
Sbjct: 378 MTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIA 437

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           A  + G +        Q+ +  V  D   ++C+I  +   G + K  EL   +       
Sbjct: 438 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHL 497

Query: 310 DNITFATMIQAYNALGMTEAAQNL 333
           D + F+++I     LG    AQN+
Sbjct: 498 DIVLFSSIINNLCKLGRVMDAQNI 521



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 147/335 (43%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A      M++ G+ P+   Y  L+  Y  +G   EA     +M+  S   P
Sbjct: 264 LCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS-ILP 322

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T+++L+ S  K+ +      +   M+  G      +YN +++GY       +M   F
Sbjct: 323 DVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF 382

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+   G  P I T N +I AY N G ++K    +NE    GVK ++ T   +  +  R
Sbjct: 383 DLML-GDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCR 441

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D      + M  +   P    Y+ +I+ F   G + K +E   ++ + GM  + + 
Sbjct: 442 IGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVL 501

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + S+++   K G +M   +I     N  +      ++ ++  Y   G +EK   +F  M 
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                P+++ + T++  Y  +G  +   +L  +M+
Sbjct: 562 SAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREML 596



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 155/334 (46%), Gaps = 21/334 (6%)

Query: 9   QPEQASLLFEVMLSDG---LKPSVDVYTALV-----SAYGQSG------LLDEAFSTIND 54
           +PE+A  L + +   G   L+  ++ + A +     SA  +SG      L + A S    
Sbjct: 44  RPEEAHDLLDELQRRGTPVLERDLNGFLAAIARAPSSAACRSGPALAVALFNRAASRAQG 103

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
            + +S   P  +TY+IL+  CT+ HR +L      ++   G+    +  N ++ G+ +AK
Sbjct: 104 PRVLS---PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAK 160

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAY---GNSGNIEKMEKWYNEFNLMGVKADI 171
           + +E            GC PD+F+ + ++ +    G SG  + + +   E   +    D+
Sbjct: 161 RTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPDV 219

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
              N +   + + G  +K   +   M +R   P  VTY+ V+    KA  ++K E + ++
Sbjct: 220 VAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQ 279

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M ++G+ PN+ TY +L+  YS  G   +   + +++    ++ D   FN ++ +  + G 
Sbjct: 280 MVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGK 339

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           +++  ++F TM  +   PD  ++  M+  Y   G
Sbjct: 340 IKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKG 373



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 154/341 (45%), Gaps = 6/341 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
             C   ++A ++F  M   G+KP+V  YT +++A  + G +D+A    N M       PD
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMID-QGVAPD 463

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            Y Y  LI+           +++++E+   G+    V +++II+   K  +  + ++ F 
Sbjct: 464 KYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFD 523

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             V  G  HP     + ++  Y   G +EK  + ++     G++ +      L   Y + 
Sbjct: 524 LTVNVG-LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKI 582

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D+  S+   M ++   P+ + YNI+I+   +AG     +  F +M   G+  N  TY
Sbjct: 583 GRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTY 642

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             ++    K     +   + +++   +V +D    N +I+   Q   VE+  +LF ++  
Sbjct: 643 SIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISR 702

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
              VP  +T++ MI      G+ E A+++ + M    +N+G
Sbjct: 703 SGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSM----QNAG 739



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 123/263 (46%), Gaps = 2/263 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +F++ ++ GL P+  VY+ L+  Y   G +++A    + M S +  +P+   Y  L+
Sbjct: 518 AQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVS-AGIEPNDVVYGTLV 576

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K  R D    +  EM   GI+ S + YN IIDG  +A +    +  F  M ESG  
Sbjct: 577 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG-I 635

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             +  T + ++     +   ++    + E   M VK DI TLN +     +    ++ + 
Sbjct: 636 AMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKD 695

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   + +    P VVTY+I+I    K G +E+ E+ F  M++ G +P+S     +V    
Sbjct: 696 LFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELL 755

Query: 253 KAGLIMKVDSILRQVENSDVILD 275
           K   I++  + L +++  +  L+
Sbjct: 756 KKNEIVRAGAYLSKIDERNFSLE 778


>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 426

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
 gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
 gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 426

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 426

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  S+   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     I AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFNKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 155/334 (46%), Gaps = 2/334 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK  + E+ S L + M S G  P +  Y  L+ A+ QSG + EA      M+  + C P
Sbjct: 55  FGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQG-AGCVP 113

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TYSIL+    +  R+D +  +  EM     E +A TYN +I+ +G+   F+E+ + F
Sbjct: 114 NAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLF 173

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MVE     P++ T   +I A G  G  E  +K     N  GV    +    + ++YG+
Sbjct: 174 HDMVEEN-VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQ 232

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A +Y++     + M +    PTV TYN +I+ F K G  ++ E    KM   G+  N  T
Sbjct: 233 AALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDT 292

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           +  ++ A+ + G   +      ++E +    D      ++S Y  AG VE+  E F  +K
Sbjct: 293 FNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIK 352

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               +P  + +  M+  Y      + A  L ++M
Sbjct: 353 ALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEM 386



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 162/321 (50%), Gaps = 2/321 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A ++F  M   G+ P +  Y+ LV  +G+   L++    + +M+S     PD+ +Y++
Sbjct: 27  DEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMES-GGSFPDITSYNV 85

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++  +         +  +M   G   +A TY+ +++ YG+  +++++   F  M  S 
Sbjct: 86  LLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSN 145

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P+  T N +I+ +G  G  +++   +++     V+ +++T   L  + G+ G+++  
Sbjct: 146 -TEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDA 204

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + ++  M ++   P+   Y  VIE +G+A   E+    F  M   G KP   TY SL+  
Sbjct: 205 KKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQM 264

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           ++K GL  + ++IL ++  S V  +   FN +I A+ Q G  E+  + ++ M++  C PD
Sbjct: 265 FAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPD 324

Query: 311 NITFATMIQAYNALGMTEAAQ 331
             T   ++  Y   G+ E ++
Sbjct: 325 EQTLEAVLSVYCFAGLVEESE 345



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 135/276 (48%), Gaps = 1/276 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           + D+ TY+ L+ +C +    D  E +   M+  GI     TY+ +++ +GK  + E++  
Sbjct: 7   QADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSE 66

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               M ESGG  PDI + N ++ A+  SG+I++    + +    G   +  T +IL   Y
Sbjct: 67  LLKEM-ESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLY 125

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           GR G YD +R +   M+     P   TYNI+I  FG+ G+ +++   F  M    ++PN 
Sbjct: 126 GRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNM 185

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY  L+ A  K GL      IL  +    V+  +  +  +I AYGQA   E+    F T
Sbjct: 186 ETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNT 245

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M E    P   T+ ++IQ +   G+ + ++ +  KM
Sbjct: 246 MNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKM 281



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 93/173 (53%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G++ADI T N L  +  R G+ D+   V   M +    P + TY+ ++ETFGK   +EK+
Sbjct: 5   GIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKV 64

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
            E  K+M+  G  P+  +Y  L+ A++++G I +   + RQ++ +  + +   ++ +++ 
Sbjct: 65  SELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNL 124

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           YG+ G  + + +LFL MK  +  P+  T+  +I  +   G  +    L + M+
Sbjct: 125 YGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMV 177



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 106/203 (52%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G   DI T N+++SA    G  ++ E  +   N  G+  DI T + L +++G+    +K+
Sbjct: 5   GIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKV 64

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M+    FP + +YN+++E   ++G I++    F++M+  G  PN+ TY  L++ 
Sbjct: 65  SELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNL 124

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y + G    V  +  +++ S+   +   +N +I+ +G+ G  +++  LF  M E +  P+
Sbjct: 125 YGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPN 184

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
             T+  +I A    G+ E A+ +
Sbjct: 185 METYEGLIFACGKGGLHEDAKKI 207



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 57/106 (53%)

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M+H G++ + +TY +L+SA ++ GL  + + + R +    ++ D   ++ ++  +G+   
Sbjct: 1   MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNR 60

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +EK+ EL   M+     PD  ++  +++A+   G  + A  +  +M
Sbjct: 61  LEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQM 106


>gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic [Vitis vinifera]
 gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 156/333 (46%), Gaps = 8/333 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G +P   VY AL++A+     +S  L +A    + MK +
Sbjct: 143 VMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALIKALGYFDKMKGM 202

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             CKP++ TY+IL+++  +    +    +  E++   +     T+N ++D YGK    +E
Sbjct: 203 ERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMDAYGKNGMIKE 262

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           MES  S M +S  C PDI T N +I +YG     +KME+ +        K  + T N + 
Sbjct: 263 MESVLSRM-KSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEKPTLPTFNSMI 321

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A + +K  +V   M    + P  +TY  +I  +G    I +  E F +M     +
Sbjct: 322 TNYGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCDCISRAREIFDEMMASKKE 381

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
               T  +++  Y   GL M+ D +L +   +     +  +  +  AY +A   E + +L
Sbjct: 382 MKVSTLNAMLEVYCMNGLPMEADLLLERARKNRPFPGSSTYKLLYKAYTKADQKELLEKL 441

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
              M     +P+   F   ++A  A G + A+Q
Sbjct: 442 LKLMDSDGILPNKRFF---LEALGAFGSSPASQ 471



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 142/298 (47%), Gaps = 11/298 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           VY+ L+S  G+ G    A    ++M++ S C+PD   Y+ LI +    H  D  + ++  
Sbjct: 136 VYSKLISVMGKKGQTRMAMWLFSEMRN-SGCRPDTSVYNALITA--HLHSRDKSKALIKA 192

Query: 91  MSYL----GIE-CSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + Y     G+E C    VTYN ++  + +A+   +  + F  + ES    PDIFT N ++
Sbjct: 193 LGYFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESI-VSPDIFTFNGVM 251

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AYG +G I++ME   +       K DI T N+L  SYGR   +DKM  V   + +    
Sbjct: 252 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEK 311

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT+ T+N +I  +GKA   EK E  FKKM   G  PN ITY SL+  Y     I +   I
Sbjct: 312 PTLPTFNSMITNYGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCDCISRAREI 371

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             ++  S   +     N ++  Y   G   +   L    ++    P + T+  + +AY
Sbjct: 372 FDEMMASKKEMKVSTLNAMLEVYCMNGLPMEADLLLERARKNRPFPGSSTYKLLYKAY 429



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 143/308 (46%), Gaps = 23/308 (7%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV------------- 101
           MK+    +P + T +  +K     H F L E++     +L  +C  V             
Sbjct: 76  MKNFGGERPLISTLNKYVKVIRTEHCFRLFEELGKTDKWL--QCLEVFRWMQKQRWYIAD 133

Query: 102 --TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKW 158
              Y+ +I   GK  +       FS M  SG C PD    N++I+A+ +S +  K + K 
Sbjct: 134 NGVYSKLISVMGKKGQTRMAMWLFSEMRNSG-CRPDTSVYNALITAHLHSRDKSKALIKA 192

Query: 159 YNEFNLMG----VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
              F+ M      K +I T NIL +++ +A   ++  ++   + +    P + T+N V++
Sbjct: 193 LGYFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMD 252

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +GK G I++ME    +MK    KP+ IT+  L+ +Y +     K++ + + +  S    
Sbjct: 253 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEKP 312

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
             P FN +I+ YG+A   EK   +F  M +    P+ IT+ ++I  Y        A+ + 
Sbjct: 313 TLPTFNSMITNYGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCDCISRAREIF 372

Query: 335 NKMIAMKE 342
           ++M+A K+
Sbjct: 373 DEMMASKK 380


>gi|255661178|gb|ACU25758.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 352

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSXKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSXKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSG-FMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 2/158 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 160 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 218

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K +     F 
Sbjct: 219 VVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 278

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
            +  S G   D     +MI AY  +G +   ++  +E 
Sbjct: 279 KL-RSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHEL 315



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSXKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 426

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  D  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   PD  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPDTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDEMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  DT  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|255661196|gb|ACU25767.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 426

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 151/341 (44%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
            L P    Y+ L++ +G+ GL D+A S +  M+     + D+  YS LI+   K   +  
Sbjct: 4   ALSPDKYTYSTLITHFGKEGLFDDALSWLQKMEH-DRVRGDLXLYSNLIELSRKLCDYSK 62

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------- 130
              I + +   GI    V YN++I+ +GKAK F E  S    M   G             
Sbjct: 63  AISIFSRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLT 122

Query: 131 ---------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
                                 C  D+ T N MI  YG  G  ++ +K +     +GV+ 
Sbjct: 123 MYVENKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + Y  A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M+ RG++PN+ITY +++S + K G + +   +  ++ +S + +D   +  +I AY +A
Sbjct: 243 QEMQSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYERA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     PDNI   T IQ     G  E A
Sbjct: 303 GLVSHAKRLLHELK----TPDNIPRDTAIQILAGSGRMEEA 339



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/349 (21%), Positives = 155/349 (44%), Gaps = 33/349 (9%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P + VY ++++ +G++ L  EA S I +M++     PD  +Y+ L+   
Sbjct: 66  IFSRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXG-VMPDTVSYTTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F +M    G  P+
Sbjct: 125 VENKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSM-RKLGVEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + + N+++  Y ++    +    +       ++ ++ T N +   YG+   ++K  +++ 
Sbjct: 184 VVSYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQ 243

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + + Y +++ AY +AG
Sbjct: 244 EMQSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYERAG 303

Query: 256 LIMKVDSILRQVENSDVIL-------------------------------DTPFFNCIIS 284
           L+     +L +++  D I                                D   F  +I 
Sbjct: 304 LVSHAKRLLHELKTPDNIPRDTAIQILAGSGRMEEATWVFRQAIDAGEVKDITVFEQMID 363

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            + +      + E+F  M+     PD+   A ++ AY  L   E A ++
Sbjct: 364 LFSKYRKYSNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHDFEKANDV 412



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M +  +      Y+ +I+   K   + +  S 
Sbjct: 7   PDKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   NSMI+ +G +    +      E    GV  D  +   L   Y 
Sbjct: 67  FSRLKRSG-ITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFIEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGVEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  YS A L  +   + R ++  D+  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYSDAELFGEAXHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P+ IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QSRGIEPNAITYSTIISIWGKVGKLDRAAMLFEKL 280



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/124 (24%), Positives = 60/124 (48%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           ++R   P   TY+ +I  FGK G  +    + +KM+H  ++ +   Y +L+    K    
Sbjct: 1   RERALSPDKYTYSTLITHFGKEGLFDDALSWLQKMEHDRVRGDLXLYSNLIELSRKLCDY 60

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            K  SI  +++ S +  D   +N +I+ +G+A    +   L   M+    +PD +++ T+
Sbjct: 61  SKAISIFSRLKRSGITPDLVVYNSMINVFGKAKLFREARSLICEMRTXGVMPDTVSYTTL 120

Query: 318 IQAY 321
           +  Y
Sbjct: 121 LTMY 124



 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 6/159 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  + ++A++LFE + S G++    +Y  ++ AY ++GL+  A   ++++K+     
Sbjct: 263 IWGKVGKLDRAAMLFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLHELKT----- 317

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD       I+      R +    +  +    G       +  +ID + K +K+  +   
Sbjct: 318 PDNIPRDTAIQILAGSGRMEEATWVFRQAIDAGEVKDITVFEQMIDLFSKYRKYSNVVEV 377

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           F  M    G  PD   +  +++AYG   + EK    Y E
Sbjct: 378 FDKM-RGLGYFPDSNVIALVLNAYGKLHDFEKANDVYLE 415


>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
 gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 426

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 150/310 (48%), Gaps = 12/310 (3%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   PD  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVTPDTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     I AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G+  + + Y +++ AY 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           +AGL+     +L +++  D I      +  I     AG +E+   +F    +   V D  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPR----DIAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 313 TFATMIQAYN 322
            F  MI  ++
Sbjct: 357 VFERMIHLFS 366



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  D  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  S+   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ +++ + V  DT  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|410110083|gb|AFV61121.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           cujabensis]
          Length = 359

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 22  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTXGVMPNTTSYSTL 80

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 81  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 139

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 140 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 259

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 260 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 299



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 63  SEM-KTXGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 121

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 122 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 181

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D I F TMI AY   G+   A+ L +++
Sbjct: 242 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 275



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 145/320 (45%), Gaps = 10/320 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S  ++M+ +  C 
Sbjct: 48  VFGKAKLFREARSLISEMKTXGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIK-CL 106

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 107 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 166

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +      ++ T NSMI  YG +   EK      E    G++ +  T + +   +G
Sbjct: 167 FRLM-QRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWG 225

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + G  D  R+ M F + R     +  + +  +I  + +AG +     + K++ H   +P+
Sbjct: 226 KVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA----HAKRLLHELKRPD 279

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +I   + +   + AG I +   + RQ  ++  + D   F  +I    +      + E+F 
Sbjct: 280 NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFD 339

Query: 301 TMKERHCVPDNITFATMIQA 320
            M+     PD+   A ++ A
Sbjct: 340 KMRGLGYFPDSNVIAVVLNA 359


>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 426

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 57
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 58  --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSG-FMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 158/332 (47%), Gaps = 1/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + E+A  LFE M   G  P+V  YT L+   G++G +DEA+    DM       PDV
Sbjct: 280 KVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLR-DGLTPDV 338

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
              + L+    K  R + +  + +EM       + V+YNT+I    ++K      SS+  
Sbjct: 339 VFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFD 398

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
            +++    P  FT + +I  Y  +  +EK      E +  G          L  + G+A 
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            Y+    +   +++ F   +   Y ++I+ FGK G + +  + F +MK++G  P+   Y 
Sbjct: 459 RYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYN 518

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L+S   KAG+I + +S+LR++E +    D    N I++ + + G   +  E+F T+K  
Sbjct: 519 ALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHS 578

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              PD +T+ T++  +   GM E A  +  +M
Sbjct: 579 GIKPDGVTYNTLLGCFAHAGMFEEAARMMREM 610



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 152/335 (45%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ K   +A  +F        KP+   Y +++    Q G  ++      +M +  DC P
Sbjct: 172 LGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFP 231

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TYS LI S  K  R D   ++  EM    ++ +   Y T++  Y K  K E+    F
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M +  GC P ++T   +I   G +G +++   +Y +    G+  D+  LN L    G+
Sbjct: 292 EEM-KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGK 350

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            G  +++ +V   M      PTVV+YN VI+  F    H+ ++  +F KMK   + P+  
Sbjct: 351 VGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEF 410

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+  Y K   + K   +L +++          +  +I+A G+A   E   ELF  +
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKEL 470

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           KE      +  +A MI+ +   G    A +L N+M
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 145/296 (48%), Gaps = 6/296 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVS 59
           M +LGK  + E+ + +F  M      P+V  Y  ++ A  +S   + E  S  + MK+ S
Sbjct: 345 MNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADS 404

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P  +TYSILI    K +R +    +L EM   G       Y ++I+  GKAK++E  
Sbjct: 405 -VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAA 463

Query: 120 ESSFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           +  F  + E+ G     ++ +  MI  +G  G + +    +NE    G   D+   N L 
Sbjct: 464 DELFKELKENFGNVSSRVYAV--MIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALM 521

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               +AGM ++  S++  M++      + ++NI++  F + G   +  E F+ +KH G+K
Sbjct: 522 SGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIK 581

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           P+ +TY +L+  ++ AG+  +   ++R++++     D   ++ I+ A G   D EK
Sbjct: 582 PDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNV-DHEK 636



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 7/261 (2%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEM---SYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           D  TY  LI+   +   +  + + + E+   +Y+ +  S    + ++   G+AK   +  
Sbjct: 125 DCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSV--SPAVLSELVKALGRAKMVSKAL 182

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTK 179
           S F    +   C P   T NS+I      G  EK+ + Y E  N      D  T + L  
Sbjct: 183 SVF-YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALIS 241

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           SY + G  D    + D M+     PT   Y  ++  + K G +EK  + F++MK  G  P
Sbjct: 242 SYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSP 301

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
              TY  L+    KAG + +     + +    +  D  F N +++  G+ G VE++  +F
Sbjct: 302 TVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVF 361

Query: 300 LTMKERHCVPDNITFATMIQA 320
             M    C P  +++ T+I+A
Sbjct: 362 SEMGMWRCTPTVVSYNTVIKA 382



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 7/169 (4%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           L+ L K+ GRA M  K  SV    + R   PT  TYN VI    + G  EK+ E + +M 
Sbjct: 165 LSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMC 224

Query: 234 HRG-MKPNSITYCSLVSAYSKAGLIMKVDSILR---QVENSDVILDTPFFNCIISAYGQA 289
           + G   P++ITY +L+S+Y K G   + DS +R   +++++ +      +  ++  Y + 
Sbjct: 225 NEGDCFPDTITYSALISSYEKLG---RNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKV 281

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           G VEK  +LF  MK   C P   T+  +I+     G  + A      M+
Sbjct: 282 GKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 34/154 (22%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------ 57
            GKC +  +A  LF  M + G  P V  Y AL+S   ++G+++EA S +  M+       
Sbjct: 489 FGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRAD 548

Query: 58  ----------------------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
                                        S  KPD  TY+ L+        F+   +++ 
Sbjct: 549 INSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMR 608

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           EM   G E  A+TY++I+D  G     ++  SSF
Sbjct: 609 EMKDKGFEYDAITYSSILDAVGNVDHEKDDVSSF 642


>gi|410110107|gb|AFV61133.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           brasiliensis]
          Length = 382

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 81

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 200

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 260

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 261 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  SEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D I F TMI AY   G+   A+ L +++
Sbjct: 243 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 166/357 (46%), Gaps = 41/357 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 27  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 85

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 144

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 145 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANN 201

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++ AY 
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 261

Query: 253 KAGLIMKVDSILRQVENSDVI-LDTPF---------------FNCIISAYGQAGDV---E 293
           +AGL+     +L +++  D I  DT                 F   I A G+  D+   E
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDA-GEVKDITVFE 320

Query: 294 KM-------------GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +M              E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 321 RMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 377



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 31/262 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 179

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ +I    K    +    ++ EM   GIE +++TY+TII  +GK  K       F+
Sbjct: 180 VVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 239

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        F  M+   E  G              PD    ++ I     +G IE+
Sbjct: 240 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEE 299

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +     +   Y  +  V D M+   +FP      +V+ 
Sbjct: 300 ATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYXNVVEVFDKMRGLGYFPDSNVIAVVLN 359

Query: 215 TFGKAGHIEKMEEYFKKMKHRG 236
            +GK    +K  + + +M+  G
Sbjct: 360 AYGKLQEFDKANDVYMEMQEVG 381


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 157/319 (49%), Gaps = 2/319 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           +L  GL+PS+  +T L++     G +D+     +DM  V   +P+VYTY+++I S +K  
Sbjct: 123 ILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDM-LVRGLQPNVYTYNVIINSLSKSG 181

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           + +     L +M  +G   + V Y+T+IDGY    + +E  S F  MV S GC P+++T 
Sbjct: 182 KANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMV-SKGCTPNVYTY 240

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            S+++ Y     IE+  +  +E    G+  DI T   +     RAG     + +  ++  
Sbjct: 241 TSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICA 300

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P ++TY ++++   K G++E+    F++M+   +KPN + Y  L+ +  K G I  
Sbjct: 301 HGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKD 360

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +  ++ +  +  +   +  ++ A  + G + +  +LF  M+E  C PD   +  +IQ
Sbjct: 361 GKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQ 420

Query: 320 AYNALGMTEAAQNLENKMI 338
            +        A+ L  +M+
Sbjct: 421 GFLQHKDPSMARQLVEEMV 439



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 130/314 (41%), Gaps = 37/314 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +  +A    + M   G  P+V  Y+ L+  Y   G +DEA S  + M S   C P
Sbjct: 177 LSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVS-KGCTP 235

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +VYTY+ L+    K  R +   ++L E    G+    VT+ TII G  +A +    +  F
Sbjct: 236 NVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLF 295

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             +   G   P+I T   ++      GN+E+    + E                      
Sbjct: 296 RYICAHGHT-PNIMTYGVLLDGLCKHGNLEEAFALFQE---------------------- 332

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
                        MQ+    P +V Y I+I++  K G I+  +E F ++   G+KPN  T
Sbjct: 333 -------------MQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYT 379

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +LV A  K GLI++   + R++E      D   +N II  + Q  D     +L   M 
Sbjct: 380 YTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMV 439

Query: 304 ERHCVPDNITFATM 317
            R    D  T A +
Sbjct: 440 NRGFSADAATRALL 453



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 126/275 (45%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  +S L  S  +   ++ +  +  E+ +LGIE    + + +I+ +    + +   S 
Sbjct: 60  PCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            S +++ G   P I T  ++++     G ++++   Y++  + G++ ++ T N++  S  
Sbjct: 120 LSKILKLG-LEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLS 178

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G  ++    +  M+K    P VV Y+ +I+ +   G +++    F  M  +G  PN  
Sbjct: 179 KSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVY 238

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL++ Y K   I +   +L +     ++ D   F  IIS   +AG      +LF  +
Sbjct: 239 TYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYI 298

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 P+ +T+  ++      G  E A  L  +M
Sbjct: 299 CAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEM 333



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 4/178 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C+  +P  A  LF  + + G  P++  Y  L+    + G L+EAF+   +M+  S
Sbjct: 278 IISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQR-S 336

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KP++  Y+ILI S  K  +    +++ + +   G++ +  TY  ++    K     E 
Sbjct: 337 TVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEA 396

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
              F  M E  GC PD    N +I  +    +     +   E    G  AD  T  +L
Sbjct: 397 HKLFRKM-EEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRALL 453



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 35/206 (16%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P I   + + S+    G+ E +     E   +G++ DI +L+IL   +      D   SV
Sbjct: 60  PCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           +  + K    P++VT+  ++      G ++++   +  M  RG++PN  TY  ++++ SK
Sbjct: 120 LSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSK 179

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           +G   +    L+Q+E                         K+G          CVP+ + 
Sbjct: 180 SGKANEALGFLKQME-------------------------KVG----------CVPNVVN 204

Query: 314 FATMIQAYNALGMTEAAQNLENKMIA 339
           ++T+I  Y   G  + A+++ + M++
Sbjct: 205 YSTLIDGYCLRGQMDEARSVFDLMVS 230


>gi|356526577|ref|XP_003531893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 878

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 152/318 (47%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  +  +A  L   M   GL+P++  Y A++ A  +  L  E      +    + C P
Sbjct: 235 LGRNNRFSEAVSLLRSMGKFGLEPNLVTYNAIIDAGAKGELTFEIVVKFLEEMIAAGCMP 294

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY+ L+K+C    R+ L   +LAEM + GI     TYNT +D   K  + +    + 
Sbjct: 295 DRLTYNSLLKTCVAKGRWKLCRDLLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAI 354

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              + +    P++ T +++++ Y  +   E     Y+E   + ++ D  + N L   Y  
Sbjct: 355 DVEMPAKNIWPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYAN 414

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G +++       M+       VVTYN +IE +G+     ++++ F +MK R + PN +T
Sbjct: 415 LGWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVQKLFDEMKARRIYPNDLT 474

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+  Y+K  +  +   + R+++   +  D  F++ +I A  + G +E    L   M 
Sbjct: 475 YSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLLDVMT 534

Query: 304 ERHCVPDNITFATMIQAY 321
           E+   P+ +T+ ++I A+
Sbjct: 535 EKGSRPNVVTYNSIIDAF 552



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 124/258 (48%), Gaps = 1/258 (0%)

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VY++S +I +  + +RF     +L  M   G+E + VTYN IID   K +   E+   F 
Sbjct: 225 VYSFSAMISALGRNNRFSEAVSLLRSMGKFGLEPNLVTYNAIIDAGAKGELTFEIVVKFL 284

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             + + GC PD  T NS++      G  +       E    G+  D+ T N    +  + 
Sbjct: 285 EEMIAAGCMPDRLTYNSLLKTCVAKGRWKLCRDLLAEMEWKGIGRDVYTYNTYVDALCKG 344

Query: 185 GMYDKMRSVMDF-MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           G  D  R  +D  M  +  +P VVTY+ ++  + KA   E     + +MKH  ++ + ++
Sbjct: 345 GRMDLARHAIDVEMPAKNIWPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVS 404

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +LV  Y+  G   +     +++E   +  D   +N +I  YG+     ++ +LF  MK
Sbjct: 405 YNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVQKLFDEMK 464

Query: 304 ERHCVPDNITFATMIQAY 321
            R   P+++T++T+I+ Y
Sbjct: 465 ARRIYPNDLTYSTLIKIY 482



 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M +  + P+   Y+ L+  Y +  +  EA     ++K     K DV  YS LI + 
Sbjct: 459 LFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQ-EGMKTDVVFYSALIDAL 517

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            K    +   ++L  M+  G   + VTYN+IID +   ++   +E
Sbjct: 518 CKNGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAFKIGQQLPALE 562


>gi|255661180|gb|ACU25759.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 426

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 152/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 132/275 (48%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS + +SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKKSG-FMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++   F  + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVMPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIYLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           + R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RDRALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKKSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C  D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCFLDLTTCNIMIDVYGQLGMAKEADKL 171



 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK  + ++A++LF+ + S G++    +Y  ++ AY ++GL+  A   ++++K     +
Sbjct: 263 IWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELK-----R 317

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD     I I       R +    +  +    G       +  +I  + K KK+  +   
Sbjct: 318 PDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIYLFSKYKKYGNVVEV 377

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           F  M    G  PD   +  +++AYG     +K    Y E   +G
Sbjct: 378 FDKM-RGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 165/328 (50%), Gaps = 11/328 (3%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +++ M+   + P++  +  +++   + G L++A   ++DMK V    P+V TY+ LI   
Sbjct: 217 VYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMK-VWGFWPNVVTYNTLIDGY 275

Query: 76  TKFHRFDLIEK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
            K  R   + K   IL EM    +  ++VT+N +IDG+ K +        F  M +S G 
Sbjct: 276 CKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEM-QSQGL 334

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            P + T NS+++   N G + + +   +E     +K ++ T N L   Y +  + ++ R 
Sbjct: 335 KPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARE 394

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF---KKMKHRGMKPNSITYCSLVS 249
           + D + K+   P V+T+N ++  + K G   KMEE F   K M  +G  PN+ TY  L+ 
Sbjct: 395 LFDNIGKQGLTPNVITFNTLLHGYCKFG---KMEEAFLLQKVMLEKGFLPNASTYNCLIV 451

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            + + G + +V ++L +++   V  DT  +N +ISA+ +  + +K   L   M ++   P
Sbjct: 452 GFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKP 511

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
            ++T+  ++  Y   G   AA NL  +M
Sbjct: 512 SHLTYNILLNGYCMEGNLRAALNLRKQM 539



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 132/265 (49%), Gaps = 4/265 (1%)

Query: 5   GKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    ++ L  FE M S GLKP+V  Y +LV+     G L+EA   +++M S S+ K
Sbjct: 312 GFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLS-SNLK 370

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V TY+ LI    K    +   ++   +   G+  + +T+NT++ GY K  K EE    
Sbjct: 371 PNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLL 430

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+E G   P+  T N +I  +   G +E+++   NE    GVKAD  T NIL  ++ 
Sbjct: 431 QKVMLEKGFL-PNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWC 489

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                 K   ++D M  +   P+ +TYNI++  +   G++       K+M+  G   N +
Sbjct: 490 EKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVV 549

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  L+  Y + G +   + +L ++
Sbjct: 550 TYNVLIQGYCRKGKLEDANGLLNEM 574



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 148/314 (47%), Gaps = 8/314 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           +G+  +  +A  + + M+ + + P+   +  L+  + +   L  A     +M+S    KP
Sbjct: 278 MGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQS-QGLKP 336

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V TY+ L+       + +  + +L EM    ++ + +TYN +I+GY K K  EE    F
Sbjct: 337 TVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELF 396

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKS 180
              +   G  P++ T N+++  Y   G   KME+ +    +M   G   +  T N L   
Sbjct: 397 DN-IGKQGLTPNVITFNTLLHGYCKFG---KMEEAFLLQKVMLEKGFLPNASTYNCLIVG 452

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + R G  ++++++++ MQ R      VTYNI+I  + +    +K      +M  +G+KP+
Sbjct: 453 FCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPS 512

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY  L++ Y   G +    ++ +Q+E      +   +N +I  Y + G +E    L  
Sbjct: 513 HLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLN 572

Query: 301 TMKERHCVPDNITF 314
            M E+  +P+  T+
Sbjct: 573 EMLEKGLIPNRTTY 586



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 132/279 (47%), Gaps = 4/279 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEM 119
           P++ T++ +I    K  + +    ++ +M   G   + VTYNT+IDGY   G+  K  + 
Sbjct: 228 PNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKA 287

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           ++    MVE+    P+  T N +I  +    N+    K + E    G+K  + T N L  
Sbjct: 288 DAILKEMVENK-VSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVN 346

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                G  ++ + ++D M      P V+TYN +I  + K   +E+  E F  +  +G+ P
Sbjct: 347 GLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTP 406

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N IT+ +L+  Y K G + +   + + +     + +   +NC+I  + + G +E++  L 
Sbjct: 407 NVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLL 466

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M+ R    D +T+  +I A+      + A  L ++M+
Sbjct: 467 NEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEML 505



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 130/297 (43%), Gaps = 14/297 (4%)

Query: 47  EAFSTINDMK---SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 103
           EAF    D +   SV  C P       L+ +  K + F  +E +  EM    I  + +T+
Sbjct: 181 EAFKRAGDYRYKLSVLSCNP-------LLSALVKENEFGGVEFVYKEMIRRKISPNLITF 233

Query: 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW---YN 160
           NT+I+G  K  K  +       M +  G  P++ T N++I  Y   G + KM K      
Sbjct: 234 NTVINGLCKVGKLNKAGDVVDDM-KVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILK 292

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E     V  +  T N+L   + +         V + MQ +   PTVVTYN ++      G
Sbjct: 293 EMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEG 352

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            + + +    +M    +KPN ITY +L++ Y K  L+ +   +   +    +  +   FN
Sbjct: 353 KLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFN 412

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            ++  Y + G +E+   L   M E+  +P+  T+  +I  +   G  E  +NL N+M
Sbjct: 413 TLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEM 469



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 3/175 (1%)

Query: 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           K  + + N L  +  +   +  +  V   M +R   P ++T+N VI    K G + K  +
Sbjct: 192 KLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGD 251

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLI---MKVDSILRQVENSDVILDTPFFNCIIS 284
               MK  G  PN +TY +L+  Y K G +    K D+IL+++  + V  ++  FN +I 
Sbjct: 252 VVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLID 311

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            + +  ++    ++F  M+ +   P  +T+ +++      G    A+ L ++M++
Sbjct: 312 GFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLS 366


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 151/323 (46%), Gaps = 1/323 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA+ + E M + G +P +  Y  L     Q+G +DEAF   ++M+ +S   PDV TY+ 
Sbjct: 295 KQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNT 354

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +C K+       ++L EM   G++ + VT+N ++    K  K EE       + E G
Sbjct: 355 LVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG 414

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T N++I AY  +GN+ K     +E    G+K D  TLN +  +  +   Y+  
Sbjct: 415 -LAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDA 473

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++    +R F P  V+Y  V+  + K  + E     + +M  R + P+  TY +L+  
Sbjct: 474 EELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKG 533

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +   + +    L ++    ++ D   +N II AY + GD+E        M E    PD
Sbjct: 534 LCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPD 593

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
            +T  T++      G  + A  L
Sbjct: 594 VVTCNTLMNGLCLHGKLDKALKL 616



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 130/296 (43%), Gaps = 1/296 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P    Y  L++A+ + G+L EA + +  MK      P   TY+ L+ +  +      
Sbjct: 238 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKR-DGIAPTQPTYNTLVSAFARLGWIKQ 296

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             K++  M+  G E    TYN +  G  +A K +E       M       PD+ T N+++
Sbjct: 297 ATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLV 356

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A           +   E    GVK  + T NI+ KS  + G  ++    ++ + +    
Sbjct: 357 DACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLA 416

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P V+TYN +I+ + KAG++ K      +M  +G+K ++ T  +++    K       + +
Sbjct: 417 PDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEEL 476

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           L        + D   +  +++AY +  + E    L+  M ER  +P   T+ T+I+
Sbjct: 477 LHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIK 532



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 138/295 (46%), Gaps = 37/295 (12%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A    E +  +GL P V  Y  L+ AY ++G + +AF+ +++M      K D +T + 
Sbjct: 401 EEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVG-KGLKMDTFTLNT 459

Query: 71  LIKSCTKFHRFDLIEKILA----------EMSYLGIEC---------------------- 98
           ++ +  K  R++  E++L           E+SY  +                        
Sbjct: 460 VLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERK 519

Query: 99  ---SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
              S  TYNT+I G  + ++ +E     + +VE G   PD  T N +I AY   G++E  
Sbjct: 520 LIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLV-PDETTYNIIIHAYCKEGDLENA 578

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            +++N+      K D+ T N L       G  DK   + +   ++     V+TYN +I++
Sbjct: 579 FRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQS 638

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             K G ++    +F  M+ +G++P++ TY  ++SA S+AG   +  ++L ++ +S
Sbjct: 639 MCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADS 693



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 100/249 (40%), Gaps = 3/249 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K+ E A  L       G  P    Y  +++AY +    + A    + M       P
Sbjct: 464 LCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIE-RKLIP 522

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            + TY+ LIK   +  R       L E+   G+     TYN II  Y K    E      
Sbjct: 523 SISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFH 582

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + MVE+    PD+ T N++++     G ++K  K +  +   G K D+ T N L +S  +
Sbjct: 583 NKMVENS-FKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCK 641

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D      D M+ +   P   TYN+V+    +AG  E+      K+   G    S  
Sbjct: 642 VGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFA 701

Query: 244 YCSLVSAYS 252
            C L+   S
Sbjct: 702 -CPLLKPSS 709



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 131/317 (41%), Gaps = 8/317 (2%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT----YSILIKSCTKFHRFD 82
           P+  +  A +SAY +  L   A   ++ ++     +P +       S L +S +   +  
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
           L   +   +  L +  +  T+N ++  +       +  ++ S M +  G  PD  T N++
Sbjct: 193 L--DVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTM-QGFGLSPDAVTYNTL 249

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           ++A+   G + +           G+     T N L  ++ R G   +   V++ M    F
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGF 309

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-PNSITYCSLVSAYSKAGLIMKVD 261
            P + TYN++     +AG +++      +M+      P+ +TY +LV A  K        
Sbjct: 310 EPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDAL 369

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +L ++ +  V       N ++ +  + G +E+       + E    PD IT+ T+I AY
Sbjct: 370 RLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAY 429

Query: 322 NALGMTEAAQNLENKMI 338
              G    A  L ++M+
Sbjct: 430 CKAGNVAKAFTLMDEMV 446



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/280 (20%), Positives = 113/280 (40%), Gaps = 38/280 (13%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           PE A  L++ M+   L PS+  Y  L+    +   L EA   +N++       PD  TY+
Sbjct: 505 PEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVE-KGLVPDETTYN 563

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           I+I +  K    +   +   +M     +   VT NT+++G     K ++    F + VE 
Sbjct: 564 IIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEK 623

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G    D+ T N++I +    G+++    ++++  + G++ D  T N++  +   AG  ++
Sbjct: 624 GK-KVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEE 682

Query: 190 MRSVMDFM------QKRFFFP------------------------------TVVTYNIVI 213
             +++  +       + F  P                               + TY   +
Sbjct: 683 AHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERL 742

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
                 G +++ +    +M  +GM  +S TY +L+    K
Sbjct: 743 NGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIK 782


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 160/337 (47%), Gaps = 7/337 (2%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            LG+ K+     LL E+    G  P V  Y+ +V+ Y + G LD+ +  I  MK     KP
Sbjct: 702  LGRIKEAHHLLLLMEL---KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKR-KGLKP 757

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            + Y Y  +I    +  +    E+  +EM   GI    V Y T+IDG+ K          F
Sbjct: 758  NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 817

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              M  S    PD+ T  ++IS +   G++ +  K ++E    G++ D  T   L   Y +
Sbjct: 818  YEM-HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCK 876

Query: 184  AG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            AG M D  R V + M +    P VVTY  +I+   K G ++   E   +M   G++PN  
Sbjct: 877  AGHMKDAFR-VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 935

Query: 243  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            TY S+V+   K+G I +   ++ + E + +  DT  +  ++ AY ++G+++K  E+   M
Sbjct: 936  TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEM 995

Query: 303  KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              +   P  +TF  ++  +   GM E  + L N M+A
Sbjct: 996  LGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLA 1032



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 160/351 (45%), Gaps = 40/351 (11%)

Query: 7    CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
            CK  E A   F  M+  G+ P   VYT L+  + + G +  A     +M S  D  PDV 
Sbjct: 773  CKLAE-AEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS-RDITPDVL 830

Query: 67   TYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            TY+ +I    +    D++E  K+  EM   G+E  +VT+  +I+GY KA   ++     +
Sbjct: 831  TYTAIISGFCQIG--DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHN 888

Query: 125  AMVESG----------------------------------GCHPDIFTLNSMISAYGNSG 150
             M+++G                                  G  P+IFT NS+++    SG
Sbjct: 889  HMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSG 948

Query: 151  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            NIE+  K   EF   G+ AD  T   L  +Y ++G  DK + ++  M  +   PT+VT+N
Sbjct: 949  NIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 1008

Query: 211  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +++  F   G +E  E+    M  +G+ PN+ T+ SLV  Y     +    +I + + + 
Sbjct: 1009 VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 1068

Query: 271  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             V  D   +  ++  + +A ++++   LF  MK +       T++ +I+ +
Sbjct: 1069 GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 1119



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 144/303 (47%), Gaps = 2/303 (0%)

Query: 12   QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            +A  LF  M   GL+P    +T L++ Y ++G + +AF   N M   + C P+V TY+ L
Sbjct: 847  EAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ-AGCSPNVVTYTTL 905

Query: 72   IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
            I    K    D   ++L EM  +G++ +  TYN+I++G  K+   EE         E+ G
Sbjct: 906  IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEA-VKLVGEFEAAG 964

Query: 132  CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             + D  T  +++ AY  SG ++K ++   E    G++  I T N+L   +   GM +   
Sbjct: 965  LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 1024

Query: 192  SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
             ++++M  +   P   T+N +++ +    +++     +K M  RG+ P+  TY +LV  +
Sbjct: 1025 KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGH 1084

Query: 252  SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
             KA  + +   + ++++     +    ++ +I  + +     +  E+F  M+      D 
Sbjct: 1085 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADK 1144

Query: 312  ITF 314
              F
Sbjct: 1145 EIF 1147



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 1/216 (0%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F    E G C  ++ + N +I      G I++         L G   D+ + + +   Y 
Sbjct: 677 FREFPEVGVCW-NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 735

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G  DK+  +++ M+++   P    Y  +I    +   + + EE F +M  +G+ P+++
Sbjct: 736 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTV 795

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y +L+  + K G I        ++ + D+  D   +  IIS + Q GD+ + G+LF  M
Sbjct: 796 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 855

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +   PD++TF  +I  Y   G  + A  + N MI
Sbjct: 856 FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 891


>gi|410110091|gb|AFV61125.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           micrantha]
          Length = 406

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 34  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 92

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 93  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 151

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 152 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 211

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 212 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 271

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 272 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 311



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 167/357 (46%), Gaps = 41/357 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 38  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 96

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 97  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 155

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 156 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANN 212

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++ AY 
Sbjct: 213 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 272

Query: 253 KAGLIMKVDSILRQVENSDVI-LDTPF---------------FNCIISAYGQAGDV---E 293
           +AGL+     +L +++  D I  DT                 F   I A G+A D+   E
Sbjct: 273 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDA-GEAKDITVFE 331

Query: 294 KM-------------GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +M              E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 332 RMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 388



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 15  DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 74

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 75  SEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 133

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 134 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 193

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 194 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 253

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D I F TMI AY   G+   A+ L +++
Sbjct: 254 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 287


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 151/343 (44%), Gaps = 16/343 (4%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLG  K   QA  +F  + +   +P    Y +++      G  ++     N+M +   C 
Sbjct: 135 MLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCF 194

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DGYGKAKK 115
           PD  TYS LI +  K  R D   ++L EM  +G++ +   Y  +I       D +G    
Sbjct: 195 PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSL 254

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           FEEM   +        C PD+FT   +I   G +G I++   ++ E    G + D   +N
Sbjct: 255 FEEMRHQY--------CRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMN 306

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKH 234
            +    G+AG  D    +   M+     P+VVTYN +I+  F       ++  +F++MK 
Sbjct: 307 NMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKE 366

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+ P+S TY  L+  + K   + K   +L +++          +  +I A G+A   + 
Sbjct: 367 SGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 426

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             ELF  +KE         +A MI+     G  + A N+ ++M
Sbjct: 427 ACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM 469



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 150/323 (46%), Gaps = 3/323 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M     +P V  YT L+   G++G +DEA+    +M+    C+PD    + +I   
Sbjct: 254 LFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQR-EGCRPDTVFMNNMINFL 312

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHP 134
            K  R D   K+  EM  L    S VTYNTII    ++K +  E+ S F  M ESG   P
Sbjct: 313 GKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG-ISP 371

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
             FT + +I  +  +  +EK      E +  G          L  + G+A  YD    + 
Sbjct: 372 SSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 431

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             +++     +   Y ++I+  GKAG ++     F +M   G  P+   Y +L+S  ++ 
Sbjct: 432 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLART 491

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G++ +  S +R+++    I D   +N I++   + G   +  E+   MK+    PD +++
Sbjct: 492 GMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSY 551

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
            T++ A +  GM E A  L  +M
Sbjct: 552 NTVLGALSHAGMFEEASKLMKEM 574



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 132/287 (45%), Gaps = 5/287 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVSDCK 62
           LGK  + + A  LF+ M +    PSV  Y  ++ A  +S     E  S    MK  S   
Sbjct: 312 LGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKE-SGIS 370

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++     
Sbjct: 371 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 430

Query: 123 FSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F  + E+ G     ++ +  MI   G +G ++     ++E N +G   D+   N L    
Sbjct: 431 FQELKENCGSSSARVYAV--MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 488

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R GM D+  S M  MQ+    P + +YNI++    K G   +  E    MK   ++P+ 
Sbjct: 489 ARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDV 548

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           ++Y +++ A S AG+  +   +++++       D   ++ I+ A G+
Sbjct: 549 VSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 595



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 6/220 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 61
           G CK  + E+A +L E M   G  P    Y +L+ A G++   D A     ++K   +C 
Sbjct: 382 GFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE--NCG 439

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
                 Y+++IK   K  R D    +  EM+ LG       YN ++ G  +    +E  S
Sbjct: 440 SSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALS 499

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           +   M E G C PDI + N +++    +G   +  +  +      V+ D+ + N +  + 
Sbjct: 500 TMRRMQEHG-CIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGAL 558

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
             AGM+++   +M  M    F   ++TY+ ++E  GK  H
Sbjct: 559 SHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVDH 598



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 1/241 (0%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           TY  +I      +++ EM      MV +  C      L+ ++   GN+  + +    + +
Sbjct: 92  TYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQ 151

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAG 220
                 +   Q  N +       G Y+K+  + + M      FP  VTY+ +I  F K G
Sbjct: 152 IKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLG 211

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
             +   +   +MK  GM+P +  Y  L++ + K        S+  ++ +     D   + 
Sbjct: 212 RRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYT 271

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +I   G+AG +++    F  M+   C PD +    MI      G  + A  L  +M  +
Sbjct: 272 ELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETL 331

Query: 341 K 341
           +
Sbjct: 332 R 332


>gi|410110123|gb|AFV61141.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           macrophylla]
          Length = 381

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 22  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 80

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 81  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 139

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 140 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 199

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 200 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 259

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 260 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 299



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 63  SEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 121

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 122 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 181

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D I F TMI AY   G+   A+ L +++
Sbjct: 242 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 275



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 26  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 84

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 85  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 143

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 144 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANN 200

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 201 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 260

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 261 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 320

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 321 MIHLLSKXKKYSNVVEVFNKMRGLGYFPDSDVIAXVLNAYGKLQEFDKANDVYMEM 376


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 149/311 (47%), Gaps = 8/311 (2%)

Query: 34  ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS- 92
           AL++A G++       + + +MK + D +P+V T+ ILI    KF R D   ++  +M+ 
Sbjct: 310 ALLTALGRAREFKRMNTLLAEMKEM-DIQPNVVTFGILINHLCKFRRVDEALEVFEKMNG 368

Query: 93  -----YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
                +L +E   +TYNT+IDG  K  + EE       M     C P+  T N +I  Y 
Sbjct: 369 GESNGFL-VEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYC 427

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            +  IE   + +++ N  GV  ++ TLN L     + G  +      + MQ +      V
Sbjct: 428 KASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAV 487

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  +I  F    +IEK  E F +M   G  P++I Y +L+S  S+AG + +   +L ++
Sbjct: 488 TYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKM 547

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           + +    D   FN +I+ + +   +++  E+   M+     PD +T+ T+I  ++  G  
Sbjct: 548 KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDF 607

Query: 328 EAAQNLENKMI 338
             A  L  KM+
Sbjct: 608 STAHRLMKKMV 618



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 152/313 (48%), Gaps = 6/313 (1%)

Query: 4   LGKCKQPEQASLLFEVM---LSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           L K ++ ++A  +FE M    S+G  ++P V  Y  L+    + G  +E    +  M+S 
Sbjct: 350 LCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQ 409

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C P+  TY+ LI    K    +   ++  +M+  G+  + VT NT++DG  K  +   
Sbjct: 410 PRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRING 469

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F+ M +  G   +  T  ++I A+ N  NIEK  + ++E    G   D      L 
Sbjct: 470 AVEFFNEM-QGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLI 528

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               +AG  D+   V+  M++  F P +V++N++I  F +   +++  E  K+M++ G+K
Sbjct: 529 SGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIK 588

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ +TY +L+S +SK G       +++++    ++     +  +I AY   G++++  ++
Sbjct: 589 PDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKI 648

Query: 299 FLTMKERHCVPDN 311
           F  M     VP N
Sbjct: 649 FRDMSSTSKVPPN 661



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 150/329 (45%), Gaps = 12/329 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +  LG+ ++ ++ + L   M    ++P+V  +  L++   +   +DEA      M     
Sbjct: 312 LTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGES 371

Query: 61  ----CKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112
                +PDV TY+ LI    K  R      L+E++ ++   +    + VTYN +IDGY K
Sbjct: 372 NGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMP---NTVTYNCLIDGYCK 428

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
           A   E     F  M    G  P++ TLN+++      G I    +++NE    G+K +  
Sbjct: 429 ASMIEAARELFDQM-NKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAV 487

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T   L +++      +K   + D M +    P  + Y  +I    +AG +++      KM
Sbjct: 488 TYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKM 547

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           K  G  P+ +++  L++ + +   + +   +L+++EN+ +  D   +N +IS + + GD 
Sbjct: 548 KEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDF 607

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAY 321
                L   M +   VP  +T+  +I AY
Sbjct: 608 STAHRLMKKMVKEGLVPTVVTYGALIHAY 636



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 147/326 (45%), Gaps = 5/326 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    E A  LF+ M  DG+ P+V     LV    + G ++ A    N+M+     K
Sbjct: 425 GYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQG-KGLK 483

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            +  TY+ LI++    +  +   ++  EM   G    A+ Y T+I G  +A K +     
Sbjct: 484 GNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFV 543

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            S M E+G   PDI + N +I+ +     +++  +   E    G+K D  T N L   + 
Sbjct: 544 LSKMKEAG-FSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFS 602

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNS 241
           + G +     +M  M K    PTVVTY  +I  +   G++++  + F+ M     + PN+
Sbjct: 603 KTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNT 662

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           + Y  L+++  +   +    S++  ++   V  +T  FN +     +   + K  EL   
Sbjct: 663 VIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDR 722

Query: 302 MKERHCVPDNITFATMIQAYNALGMT 327
           M E  C PD IT   + +  +A+G T
Sbjct: 723 MTEHACNPDYITMEILTEWLSAVGET 748



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 3/261 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LF+ ML  G  P   VY  L+S   Q+G LD A   ++ MK  +   PD+ ++++
Sbjct: 503 EKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKE-AGFSPDIVSFNV 561

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    + ++ D   ++L EM   GI+   VTYNT+I  + K   F         MV+ G
Sbjct: 562 LINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEG 621

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDK 189
              P + T  ++I AY  +GN+++  K + + +    V  +    NIL  S  R    D 
Sbjct: 622 LV-PTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDL 680

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             S+MD M+ +   P   T+N + +   +   + K  E   +M      P+ IT   L  
Sbjct: 681 ALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTE 740

Query: 250 AYSKAGLIMKVDSILRQVENS 270
             S  G   K+ S ++  E S
Sbjct: 741 WLSAVGETAKLKSFVQGYEVS 761



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 147/344 (42%), Gaps = 34/344 (9%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY--SILIK 73
           LF+   S  +  SV+  T L+  +G++ ++DE+F   N++     C     T+  +ILI 
Sbjct: 146 LFKTSKSHKIPLSVNAATLLIRCFGRAQMVDESFLVYNEL-----CPSRRLTHIRNILID 200

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII--------DGYGKAKKFEEMESSFSA 125
              +  R D    +L EM     E    +    I        D  G+A   EE+    S 
Sbjct: 201 VLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSK 260

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
             E     P+   L  +IS    SG  ++     +    +G   +  + N L  + GRA 
Sbjct: 261 FAEHE-VFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAR 319

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KHRG--MKPN 240
            + +M +++  M++    P VVT+ I+I    K   +++  E F+KM   +  G  ++P+
Sbjct: 320 EFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPD 379

Query: 241 SITYCSLVSAYSKA-------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            ITY +L+    K        GL+ ++ S  R + N      T  +NC+I  Y +A  +E
Sbjct: 380 VITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPN------TVTYNCLIDGYCKASMIE 433

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              ELF  M +    P+ +T  T++      G    A    N+M
Sbjct: 434 AARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEM 477



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 1/227 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +  + ++AS +   M   G  P +  +  L++ + +   LDEA+  + +M++ +  KP
Sbjct: 531 LSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMEN-AGIKP 589

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY+ LI   +K   F    +++ +M   G+  + VTY  +I  Y      +E    F
Sbjct: 590 DGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIF 649

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  +    P+    N +I++      ++      ++  + GVK +  T N + K    
Sbjct: 650 RDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQE 709

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
                K   +MD M +    P  +T  I+ E     G   K++ + +
Sbjct: 710 KNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGETAKLKSFVQ 756


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 156/352 (44%), Gaps = 5/352 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +  + E+A  LF  +   G+ P++  Y  ++  YG+ G        + +    +  +P
Sbjct: 99  LSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEP 158

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +T S +I +C +    D       ++   G     VTYN ++  +GKA  + E     
Sbjct: 159 DDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVL 218

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E  GC PD  T N +   Y  +G  E+  K  +     G+  +  T N +  +Y  
Sbjct: 219 KEM-EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYAN 277

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+  ++ D M+K  + P V TYN++    GK      M E  ++M   G  PN +T
Sbjct: 278 VGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVT 337

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + ++++   K G+   V  +L  +++  V L    +N +ISAYG+ G      +++  M 
Sbjct: 338 WNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMI 397

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI--AMKEN--SGKKLIQC 351
                P   T+  ++   +  G    AQ++ +KM+    K N  S   L+QC
Sbjct: 398 SSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQC 449



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 147/303 (48%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           +V A G+ G  D     +++M      + DV  Y+ ++ + ++  R++   ++ AE+   
Sbjct: 59  VVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQ 118

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G+  + VTYN ++D YG+  +      +    + + G  PD FT +++I+A G  G +++
Sbjct: 119 GVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQ 178

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
              ++ +    G    + T N L + +G+AG Y +   V+  M+     P  VTYN +  
Sbjct: 179 AVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 238

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
           T+ +AG  E+  +    M  +G+ PN+ TY ++++AY+  G + +  ++  +++ +  + 
Sbjct: 239 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVP 298

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           +   +N I    G+      M E+   M    C P+ +T+ TM+      GM +    + 
Sbjct: 299 NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 358

Query: 335 NKM 337
           N M
Sbjct: 359 NGM 361



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 172/364 (47%), Gaps = 37/364 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A+   + M S GL P+   Y  +++AY   G +DEA +  + MK  +   P+V TY++
Sbjct: 247 EEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKK-NGYVPNVNTYNL 305

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +     K  RF  + ++L EMS  G   + VT+NT++   GK +  E+  +     ++S 
Sbjct: 306 IFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGK-RGMEDYVTRVLNGMKSC 364

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G      T N++ISAYG  G+     K Y+E    G    + T N L     R G +   
Sbjct: 365 GVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTA 424

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----------------------------- 221
           +S++  M K  F P   +Y+++++ + K G+                             
Sbjct: 425 QSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIA 484

Query: 222 ------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                 +E +E+ F+++K +G KP+ + + S+++ Y+K GL  K   +   ++ S +  D
Sbjct: 485 NFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPD 544

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N ++  Y ++ +  +  ++   +K     PD +++ T+I  +   G+ + AQ + +
Sbjct: 545 LITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILS 604

Query: 336 KMIA 339
           +MIA
Sbjct: 605 EMIA 608



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 150/357 (42%), Gaps = 35/357 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA   FE + + G  P V  Y AL+  +G++G   EA   + +M+  S C+PD  TY+ 
Sbjct: 177 DQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED-SGCQPDAVTYNE 235

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM----------- 119
           L  +  +   F+   K L  M+  G+  +  TYNT++  Y    + +E            
Sbjct: 236 LAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNG 295

Query: 120 -----------------ESSFSAMVE------SGGCHPDIFTLNSMISAYGNSGNIEKME 156
                            +S F+AM+E        GC P+  T N+M++  G  G  + + 
Sbjct: 296 YVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVT 355

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           +  N     GV+    T N L  +YGR G       + D M    F P + TYN ++   
Sbjct: 356 RVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVL 415

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            + G     +    KM   G KPN  +Y  L+  Y+K G    ++SI ++V    +    
Sbjct: 416 SRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSW 475

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                ++ A  +   +E + + F  +K +   PD + F +M+  Y   G+   A  +
Sbjct: 476 VILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 532



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 161/348 (46%), Gaps = 2/348 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + GK    +  + +   M S G++ S D Y  L+SAYG+ G    AF   ++M S S 
Sbjct: 342 LAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMIS-SG 400

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P + TY+ L+   ++   +   + I+++M   G + +  +Y+ ++  Y K      +E
Sbjct: 401 FTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIE 460

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            S    V  G   P    L +++ A      +E +EK + E    G K D+   N +   
Sbjct: 461 -SIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAM 519

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y + G+Y K   + D +++    P ++TYN +++ + K+    + E+  K++K   +KP+
Sbjct: 520 YAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPD 579

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ++Y ++++ + K GLI +   IL ++    +      ++ ++  Y       +  E+  
Sbjct: 580 VVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVN 639

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 348
            M   +  P  +T+  ++ +Y      + A+   +++    +N  +KL
Sbjct: 640 YMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKL 687


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 171/362 (47%), Gaps = 45/362 (12%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + E++  L + ++S GL+P   +YT ++++  +S  L EA   + +M   +
Sbjct: 88  LLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIR-A 146

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C P + T++ LI  C +    ++ + +L  M+  G++   VTYNT++DG  KA + +E 
Sbjct: 147 GCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEA 206

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-------EKMEKWYNEFNLM------- 165
           E     M ++ GC PD+   +S +     SG +       E+M    ++ N++       
Sbjct: 207 EQLLERM-KASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILD 265

Query: 166 ----------------------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                                 G   ++   + +     + G   + RSVM+ M +    
Sbjct: 266 GLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCR 325

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVTY+ ++    KAG IE+  E  ++M   G KPN++TYCSLV      G + + + +
Sbjct: 326 PDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERM 385

Query: 264 LRQVENSDVILD-----TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           + ++ +     D        +N +I    +AG ++   + F  M+ + C PD ++++T++
Sbjct: 386 VEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIV 445

Query: 319 QA 320
           + 
Sbjct: 446 EG 447



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 143/324 (44%), Gaps = 3/324 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYT 67
           +P     L E M + G++P+V  Y  L+    +     EA   + DM S      PD+ T
Sbjct: 25  RPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVT 84

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           YS L+    K  + +   ++L E+   G+   A+ Y  ++    K+ +  E       M+
Sbjct: 85  YSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMI 144

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            +G C P + T N++IS      N+E  +         GVKAD+ T N L     +AG  
Sbjct: 145 RAG-CCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRL 203

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            +   +++ M+     P VV Y+  +    K+G +    +  ++M+     PN +TY ++
Sbjct: 204 QEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTI 263

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           +    K+G I     ++ Q+ +SD   L+   ++ ++    + G  ++   +   M    
Sbjct: 264 LDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAG 323

Query: 307 CVPDNITFATMIQAYNALGMTEAA 330
           C PD +T+++++      G  E A
Sbjct: 324 CRPDVVTYSSLVNGLCKAGKIEEA 347



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 142/316 (44%), Gaps = 37/316 (11%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           + C P+  T++ L+   +K  R    E++L  M+  GI+ + V+YN +++G  K +++ E
Sbjct: 4   TGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHE 63

Query: 119 MESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
            E     M+  GG   PD+ T ++++S Y  +G +E+  +   E    G++ D      +
Sbjct: 64  AEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKV 123

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI------------------------ 213
             S  ++    +   +++ M +    PT++T+N +I                        
Sbjct: 124 MASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGV 183

Query: 214 -----------ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
                      +   KAG +++ E+  ++MK  G  P+ + Y S V    K+G ++    
Sbjct: 184 KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQ 243

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVPDNITFATMIQAY 321
           +L Q+ +SD   +   +N I+    ++G ++   E+   M     C  + + ++T++   
Sbjct: 244 VLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGL 303

Query: 322 NALGMTEAAQNLENKM 337
             LG T+ A+++   M
Sbjct: 304 CKLGRTQEARSVMEAM 319



 Score = 40.8 bits (94), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 2/110 (1%)

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M   G  PNS+T+ +LV+ +SK G     + +L  +    +  +   +N ++    +   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 292 VEKMGELFLTMKER--HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             +  EL   M  R     PD +T++T++  Y   G  E ++ L  ++I+
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVIS 110


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 153/320 (47%), Gaps = 2/320 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML+ G  P+   Y  L+ +  Q+   +EA S    M +   C P+V++YSILI    +  
Sbjct: 43  MLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM-AAQGCSPNVFSYSILIAGLCRGQ 101

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           + D   ++L EM   G + + VTY +++ G  K  K +E    FS MV  G C PD    
Sbjct: 102 KVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRG-CPPDGVVY 160

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N +I  +   G++ +  + + E    G    + T N L   + R G + +++S+   M +
Sbjct: 161 NVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLR 220

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           +   P + T+N +++ F K G + +    F +M+  G  P+ ++Y +L+      G   +
Sbjct: 221 QGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHE 280

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +LR++  S V  D   +N +I  Y ++G ++   +LF  + +    PD  +++T+I 
Sbjct: 281 AQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIID 340

Query: 320 AYNALGMTEAAQNLENKMIA 339
                G   AA  +   MIA
Sbjct: 341 CLCRAGKVGAAFVVFKDMIA 360



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 141/303 (46%), Gaps = 9/303 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + ++ E+A  +F  M + G  P+V  Y+ L++   +   +DEA   +N+M      +P
Sbjct: 62  LCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGH-QP 120

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TY  L+    K  +      + + M Y G     V YN +IDG+ K     E    F
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+E  GC P +FT NS++S +   G   +++  + +    G   +I T N L   + +
Sbjct: 181 EEMLEK-GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 184 AGMYDKMRSVMDFMQKRFFF--PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            G  D + +   F++ R     P VV+YN +I      G   + +   ++M   G+ P+ 
Sbjct: 240 MG--DMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDI 297

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           ++Y  L+  YSK+G +     +  ++  S +  D   ++ II    +AG   K+G  F+ 
Sbjct: 298 VSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAG---KVGAAFVV 354

Query: 302 MKE 304
            K+
Sbjct: 355 FKD 357



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 134/307 (43%), Gaps = 37/307 (12%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y  L+    +SG  D  + T NDM + + C P+ YTY  L++S  +              
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLA-AGCVPNTYTYGYLLRSLCQ-------------- 64

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
                                A++FEE  S F  M   G C P++F+ + +I+       
Sbjct: 65  ---------------------AQRFEEARSVFRGMAAQG-CSPNVFSYSILIAGLCRGQK 102

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++  +  NE    G + ++ T   L     + G   +   +   M  R   P  V YN+
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ F K G + +    F++M  +G  P   TY SL+S +S+ G   +V S+ + +    
Sbjct: 163 LIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
            + +   FN ++  + + GD+ +   LFL M+   C PD +++ T+I+   + G    AQ
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQ 282

Query: 332 NLENKMI 338
            L  +MI
Sbjct: 283 RLLREMI 289



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 137/311 (44%), Gaps = 4/311 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + ++A  LF  M+  G  P   VY  L+  + + G + EA+    +M    
Sbjct: 128 LLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLE-K 186

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C P V+TY+ L+   ++   F  ++ +  +M   G   +  T+N ++DG+ K     E 
Sbjct: 187 GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEA 246

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M  S GC PD+ + N++I    + G   + ++   E    GV  DI + NIL  
Sbjct: 247 HRLFLEM-RSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILID 305

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y ++G  D    +   + K    P   +Y+ +I+   +AG +      FK M   G  P
Sbjct: 306 GYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAP 365

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           ++     LV    +   + +   + + +   + +   P +N ++    +A   + + E+F
Sbjct: 366 DAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIF 425

Query: 300 LTMKERHCVPD 310
             + ER   PD
Sbjct: 426 HELTERGFSPD 436



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 41/241 (17%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS- 74
           LF+ ML  G  P++  +  L+  + + G + EA     +M+S+  C PDV +Y+ LI+  
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLG-CPPDVVSYNTLIRGM 272

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
           C+K    +  +++L EM   G+    V+YN +IDGY K+   +     F  + +SG   P
Sbjct: 273 CSKGKPHE-AQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSG-LEP 330

Query: 135 DIFTLNSMISAYGNSGNI--------------------------------EKMEKWYNEF 162
           D F+ +++I     +G +                                E++ +    F
Sbjct: 331 DAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELF 390

Query: 163 NLMGVKAD----IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             M VK +    I   N+L     +A   D +  +   + +R F P V    +++ET  +
Sbjct: 391 QAM-VKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRR 449

Query: 219 A 219
           +
Sbjct: 450 S 450



 Score = 44.3 bits (103), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 26/132 (19%), Positives = 62/132 (46%)

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           ++YN ++E   K+G  + +   +  M   G  PN+ TY  L+ +  +A    +  S+ R 
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +       +   ++ +I+   +   V++  EL   M +    P+ +T+ +++     +G 
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 327 TEAAQNLENKMI 338
            + A +L ++M+
Sbjct: 138 LKEAVDLFSRMV 149


>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
           [Burroughsia fastigiata]
          Length = 348

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +KS S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 5   KAISIFSRLKS-SGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTL 63

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 64  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 123 IEPNVVSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 182

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S   +D   F  +I AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAY 242

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 243 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 282



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 127/251 (50%), Gaps = 1/251 (0%)

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           I + +   G     V YNT+I  +GKAK F E  S  S M ++ G  P+  + +++++ Y
Sbjct: 9   IFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEM-KTAGVTPNTTSYSTLLTMY 67

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +    +    ++E   +    D+ T NI+   YG+ GM  +   +   M+K    P V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K ++++++
Sbjct: 128 VSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQE 187

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+
Sbjct: 188 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGL 247

Query: 327 TEAAQNLENKM 337
              A+ L +++
Sbjct: 248 VAHAKRLLHEL 258



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 149/326 (45%), Gaps = 10/326 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++ GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S  ++M+ +  
Sbjct: 29  IIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTLLTMYVENKKFLEALSVFSEMREIK- 87

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C  D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E  
Sbjct: 88  CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLVRVYGDAELFGEAI 147

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M +      ++ T NSMI  YG +   EK      E    G++ +  T + +   
Sbjct: 148 HLFRLM-QRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISI 206

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           +G+ G  D  R+ M F + R     +  + +  +I  + +AG +     + K++ H   +
Sbjct: 207 WGKVGKLD--RAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVA----HAKRLLHELKR 260

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++I   + +   + AG I +   + RQ  ++  + D   F  +I    +      + E+
Sbjct: 261 PDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEV 320

Query: 299 FLTMKERHCVPDNITFATMIQAYNAL 324
           F  M+     PD+   A ++ AY  L
Sbjct: 321 FDKMRGLGYFPDSDVIAIVLNAYGKL 346



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 105/216 (48%)

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           S  + ++S G  PD+   N+MI  +G +    +     +E    GV  +  + + L   Y
Sbjct: 8   SIFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTLLTMY 67

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
                + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN 
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           ++Y +LV  Y  A L  +   + R ++  ++  +   +N +I  YG+  + EK   L   
Sbjct: 128 VSYNTLVRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQE 187

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M+ R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 188 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 223



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 69/135 (51%)

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y K  S+   ++   + P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 3   YSKAISIFSRLKSSGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYST 62

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++ Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 307 CVPDNITFATMIQAY 321
             P+ +++ T+++ Y
Sbjct: 123 IEPNVVSYNTLVRVY 137


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 157/324 (48%), Gaps = 2/324 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M  D   P+V  YT ++ A   +    E     N+M+  S C+P+V+TY++++ + 
Sbjct: 306 LFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERS-CEPNVHTYTVMVDAM 364

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  + D   +IL EM   G+  S VTYN +I GY +  + E        M ES  C P+
Sbjct: 365 CKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLM-ESNNCRPN 423

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T N +I  +    ++ K     ++     +   + T N L     +AG +D    ++D
Sbjct: 424 ERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLD 483

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            +++    P   TY++ I+T  K+  +E+  + F  +K +G+K N + Y +L+  + KAG
Sbjct: 484 LLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAG 543

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I +  S+L ++ + D + ++  +N +I    + G V++   +   M +    P   T+ 
Sbjct: 544 KIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYT 603

Query: 316 TMIQAYNALGMTEAAQNLENKMIA 339
            +I+     G  + A  + N+M++
Sbjct: 604 ILIEEMLREGDFDHANRVFNQMVS 627



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 133/280 (47%), Gaps = 2/280 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
             K K   +A  L   ML   L PS+  Y +L+    ++G  D A+  ++ +K  +   P
Sbjct: 434 FSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKE-NGLVP 492

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +TYS+ I +  K  R +    +   +   GI+ + V Y  +IDG+ KA K +E  S  
Sbjct: 493 DQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLL 552

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  S  C P+  T NS+I      G +++        + MGVK  + T  IL +   R
Sbjct: 553 ERM-HSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLR 611

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G +D    V + M      P V TY   I T+  +G++++ E    +M   G+ P+S+T
Sbjct: 612 EGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLT 671

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
           Y  L+SAY + GL     ++L+++ ++      P +N +I
Sbjct: 672 YTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 161/338 (47%), Gaps = 4/338 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ML +    ++   ++  ML+D + P++     +V+AY + G + EA   ++ +   + 
Sbjct: 186 LMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQ-AG 244

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD +TY+ LI    + +  +   K+   M   G   + V+Y TII G  +A + +E  
Sbjct: 245 LSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGI 304

Query: 121 SSFSAMVESGGCHPDIFTLNSMISA-YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           S F  M E   C+P + T   +I A +GN  N+E M+  +NE      + ++ T  ++  
Sbjct: 305 SLFKKMRED-DCYPTVRTYTVIIHALFGNDRNLEGMD-LFNEMRERSCEPNVHTYTVMVD 362

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +  +    D+ R +++ M ++   P+VVTYN +I  + + G IE   E    M+    +P
Sbjct: 363 AMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRP 422

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N  TY  L+  +SK   + K  ++L ++  S +      +N +I    +AG  +   +L 
Sbjct: 423 NERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLL 482

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +KE   VPD  T++  I         E A +L N +
Sbjct: 483 DLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSL 520



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 2/333 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K ++ +++  +   M+  GL PSV  Y AL+  Y + G ++ A   +  M+S ++C+P+ 
Sbjct: 366 KERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMES-NNCRPNE 424

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ LI   +K         +L++M    +  S VTYN++I    KA  F+        
Sbjct: 425 RTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDL 484

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           + E+G   PD +T +  I     S  +E+    +N     G+KA+      L   + +AG
Sbjct: 485 LKENGLV-PDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAG 543

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D+  S+++ M      P   TYN +I    K G +++     + M   G+KP   TY 
Sbjct: 544 KIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYT 603

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+    + G     + +  Q+ +     D   +   I  Y  +G+V++   +   M E 
Sbjct: 604 ILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEA 663

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +PD++T+  +I AY  LG+   A N+  +M+
Sbjct: 664 GVMPDSLTYTLLISAYERLGLAYDAFNVLKRML 696



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 142/319 (44%), Gaps = 4/319 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++LG C+  +   A  +F +M + G + +   YT ++    ++G +DE  S    M+   
Sbjct: 255 LILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMRE-D 313

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           DC P V TY+++I +     R      +  EM     E +  TY  ++D   K +K +E 
Sbjct: 314 DCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDES 373

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
               + M+E G   P + T N++I  Y   G IE   +          + + +T N L  
Sbjct: 374 RRILNEMMEKGLV-PSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELIC 432

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + +     K  +++  M +    P++VTYN +I    KAGH +   +    +K  G+ P
Sbjct: 433 GFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVP 492

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  TY   +    K+  + +   +   ++   +  +   +  +I  + +AG +++   L 
Sbjct: 493 DQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLL 552

Query: 300 LTMKERHCVPDNITFATMI 318
             M    C+P++ T+ ++I
Sbjct: 553 ERMHSEDCLPNSSTYNSLI 571



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 150/337 (44%), Gaps = 15/337 (4%)

Query: 14  SLLFEVMLSDGL-----KPSVDVYTALVSAYGQSGLLD---EAFSTINDMKSVSDCKPDV 65
           S L ++++ + L     K  + +  A VS      LLD   +     ND+K     K  V
Sbjct: 124 SFLLKILIPNNLFGVGEKIRISMIKACVSVDDIRFLLDFLRQMNRDDNDIKF----KLSV 179

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            +Y+ L+    +F   D ++++  EM    I  +  T NT+++ Y K     E     S 
Sbjct: 180 RSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSK 239

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           + ++G   PD FT  S+I  Y  + ++    K +N     G + +  +   +      AG
Sbjct: 240 IFQAG-LSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAG 298

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
             D+  S+   M++   +PTV TY ++I   FG   ++E M+  F +M+ R  +PN  TY
Sbjct: 299 RIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMD-LFNEMRERSCEPNVHTY 357

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +V A  K   + +   IL ++    ++     +N +I  Y + G +E   E+   M+ 
Sbjct: 358 TVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMES 417

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            +C P+  T+  +I  ++       A  L +KM+  K
Sbjct: 418 NNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESK 454


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 161/329 (48%), Gaps = 37/329 (11%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E    +F++M+++G+KP++  Y +L+ AY   G+  EA +  N +K  +  +PD+   
Sbjct: 203 QVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK-NGLRPDI--- 258

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
                                           V+Y ++++ YG++ + E+    F+ M +
Sbjct: 259 --------------------------------VSYTSLLNAYGRSAQPEKAREVFNKM-K 285

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
              C P+  + N++I AYG++G +++     +E    G++ D+ +++ L  + GR     
Sbjct: 286 KNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQIT 345

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           ++ ++++  + R      V YN  I+++   G  EK  E +  M+   +KP+++TY  L+
Sbjct: 346 RIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILI 405

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           S  SK G   +       + +S V      ++ +I +Y + G + +    F +MK+  C 
Sbjct: 406 SGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCF 465

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKM 337
           PD +T+ T+IQAYNA G  + A +L  +M
Sbjct: 466 PDVLTYTTLIQAYNAGGGWKRAWDLFKEM 494



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 152/310 (49%), Gaps = 4/310 (1%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D+Y  ++  Y +   +D+A     +M+    CKPD   Y+ LI + ++  ++     I+ 
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWR-CKPDADIYNSLIHAHSRAGQWRWAINIME 70

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M    I  +  TYN +I+  G A  +++       M E+ G  PD+ T N ++SA  N 
Sbjct: 71  DMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTEN-GVGPDLVTHNIVLSALKNG 129

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVV 207
               K   ++       V +D  TLNI+     + G   +   + + M++R     P VV
Sbjct: 130 AQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVV 189

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  ++ ++   G +E  +  F  M   G+KPN + Y SL+ AY+  G+  +  +I   +
Sbjct: 190 TYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLI 249

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           + + +  D   +  +++AYG++   EK  E+F  MK+  C P+ +++  +I AY + GM 
Sbjct: 250 KKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGML 309

Query: 328 EAAQNLENKM 337
           + A  L ++M
Sbjct: 310 KEAVGLLHEM 319



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 183/418 (43%), Gaps = 74/418 (17%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +  +  Q +QA  LF  M     KP  D+Y +L+ A+ ++G    A + + DM   +   
Sbjct: 20  LYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAA-IP 78

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG------YGKA-KK 115
           P   TY+ +I +C     +    ++  +M+  G+    VT+N ++        Y KA   
Sbjct: 79  PTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISY 138

Query: 116 FEEMESS----------------------------FSAMVE-SGGCHPDIFTLNSMISAY 146
           FE M+ +                            F++M E    C PD+ T  S++ +Y
Sbjct: 139 FEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSY 198

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G +E  +  ++     GVK +I   N L  +Y   GM+ +  ++ + ++K    P +
Sbjct: 199 CIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDI 258

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL---------- 256
           V+Y  ++  +G++   EK  E F KMK    KPN ++Y +L+ AY  AG+          
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHE 318

Query: 257 -------------------------IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
                                    I ++++IL    +  + L+T  +N  I +Y   GD
Sbjct: 319 MEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGD 378

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLENKMIAMKENSGKKL 348
            EK  EL+ +M+E +  PD +T+  +I   + LG  TE+ +  E+ M+  K +S K++
Sbjct: 379 YEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFED-MVDSKVSSTKEV 435



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 157/329 (47%), Gaps = 5/329 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  QPE+A  +F  M  +  KP+   Y AL+ AYG +G+L EA   +++M+     +PD
Sbjct: 269 GRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEK-DGIQPD 327

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V + S L+ +C +  +   IE IL      GI+ + V YN+ I  Y     +E+    ++
Sbjct: 328 VVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYT 387

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           +M ES    PD  T N +IS     G   +  +++ +     V +  +  + L  SY + 
Sbjct: 388 SMRESN-VKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQ 446

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +  S    M+K   FP V+TY  +I+ +   G  ++  + FK+M+  G+ P++I  
Sbjct: 447 GKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIIC 506

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+ A++K G   +V  ++  ++   + L+   +  II++     D +   E+   +  
Sbjct: 507 SSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDS 566

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNL 333
                 +I+  T+    N LG     +N+
Sbjct: 567 SL---SSISVGTLNHVLNFLGKCGKTENM 592



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+ +  MI  Y     +++    + E      K D    N L  ++ RAG +    ++M
Sbjct: 12  DIYGM--MIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIM 69

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + M +    PT  TYN VI   G AG+ +K  E  KKM   G+ P+ +T+  ++SA    
Sbjct: 70  EDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNG 129

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 312
               K  S    ++ ++V  DT   N II    + G   +  ELF +M+ER   C PD +
Sbjct: 130 AQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVV 189

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           T+ +++ +Y   G  E  + + + M+A
Sbjct: 190 TYTSIMHSYCIYGQVENCKAIFDLMVA 216


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 155/329 (47%), Gaps = 6/329 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G +P + ++T+L+S Y   G  +EA+  + +M +   C PDV  Y+ LI       
Sbjct: 529 MRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEM-TARGCAPDVILYTSLIDLLFSTG 587

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R      +   M   G    A+TY TII  + K    E        M +SG   PD F  
Sbjct: 588 RVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSG-VGPDCFAY 646

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM-DFMQ 198
           NS++  Y     +++    Y+     G+K +  T N+L     + G  D+  S+  + ++
Sbjct: 647 NSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLE 706

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           K    PT+V+Y I+I+  GKAG + +    F++M  RG+ P   TY SL+ + +KAG I 
Sbjct: 707 KDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIP 766

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +   ++  +    V  D   ++ +I+    +  V+   ++F  M +R C P+ +T+  + 
Sbjct: 767 EAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLR 826

Query: 319 QAYNALGMT---EAAQNLENKMIAMKENS 344
           + + A G     EA +   ++ +AM+  S
Sbjct: 827 RGFRAAGRALDLEAVKQHFSQGVAMEAGS 855



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 8/315 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+++ S G KP+   YT ++     +  ++EA       K+  D   DV +Y+ +IK  
Sbjct: 321 LFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEA-------KAFFDEALDVISYTTVIKGL 373

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               R D   ++  ++   G   + V Y  +IDG  KA + E+   +F  M  S  C P 
Sbjct: 374 ADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSS-CVPT 432

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T   +I     +  +    K + +    G   D  T   L   + +A   D+ R ++D
Sbjct: 433 RTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLD 492

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M  +   PT VTY  ++  F K   I + +E   +M+ RG +P    + SL+S Y   G
Sbjct: 493 VMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKG 552

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
              +   +L ++       D   +  +I      G V +   +F +M E+ C PD +T+ 
Sbjct: 553 RAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYG 612

Query: 316 TMIQAYNALGMTEAA 330
           T+IQ ++ +G  EAA
Sbjct: 613 TIIQNFSKIGNVEAA 627



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 151/370 (40%), Gaps = 36/370 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS---- 59
           L   K+ ++A  LFE + + G  P+V  YTA++    ++G +++      DM   S    
Sbjct: 373 LADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPT 432

Query: 60  ------------------------------DCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
                                          C PD  TY+ LI   +K  + D   K+L 
Sbjct: 433 RTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLD 492

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
            M   G E +AVTY +I+ G+ K     E +   + M E G C P +F   S++S Y + 
Sbjct: 493 VMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERG-CEPGLFIFTSLLSYYLSK 551

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G  E+  +   E    G   D+     L       G   + R V D M ++   P  +TY
Sbjct: 552 GRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTY 611

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
             +I+ F K G++E   E  + M   G+ P+   Y SL+  Y K   + +   +  ++  
Sbjct: 612 GTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA 671

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-ITFATMIQAYNALGMTE 328
           S +  +   FN ++    + G  ++   LF  M E+  VP   +++  +I      G   
Sbjct: 672 SGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVS 731

Query: 329 AAQNLENKMI 338
            A +   +MI
Sbjct: 732 EAFSQFQEMI 741



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 158/363 (43%), Gaps = 29/363 (7%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + ++A+ +++ +++  +  S   Y +L+  Y + G +D+    +  M    D  P
Sbjct: 239 LCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVEC-DNFP 297

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+ TY+IL+   ++ +R D   ++   +S  G + +A TY TII G   A++ EE ++ F
Sbjct: 298 DIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFF 357

Query: 124 SAMVE----------------------------SGGCHPDIFTLNSMISAYGNSGNIEKM 155
              ++                            + GC P++    ++I     +G IE  
Sbjct: 358 DEALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDG 417

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            K + + +         T  ++     +A M      V + M ++   P  +TY  +I+ 
Sbjct: 418 LKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDG 477

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           F KA  +++  +    M  +G +P ++TY S+V  + K  +I +   ++ Q+        
Sbjct: 478 FSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPG 537

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              F  ++S Y   G  E+  ++   M  R C PD I + ++I    + G    A+++ +
Sbjct: 538 LFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFD 597

Query: 336 KMI 338
            MI
Sbjct: 598 SMI 600



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 147/329 (44%), Gaps = 8/329 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ ++A  LF  M S G +P++  Y  ++S       +DEA+   N M   + C+P
Sbjct: 30  LCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMID-NGCEP 88

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV  ++ LI    K  +   +  +L   +          Y ++I GY KA    ++++ F
Sbjct: 89  DVIAFTTLIHGFCKAGQ-PQVGHMLLNQALKRFRPDVFLYTSVIHGYCKAG---DLDTGF 144

Query: 124 SAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             + E  + GC PD      +I      G +++  + +      G   D  T   L ++ 
Sbjct: 145 KILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEAL 204

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
              G  D+   +   M +R + P +   + +I    KAG +++  E ++ +  + +  + 
Sbjct: 205 SNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSR 264

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           + Y SL+  Y K G +     +L Q+   D   D   +N +++ + +A  ++   ELF  
Sbjct: 265 VAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKL 324

Query: 302 MKERHCVPDNITFATMIQA-YNALGMTEA 329
           +    C P+  T+ T+IQ  Y+A  M EA
Sbjct: 325 LSSYGCKPNAATYTTIIQGLYDAQRMEEA 353



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 115/256 (44%), Gaps = 2/256 (0%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           + PE A  +F+ M+  G  P    Y  ++  + + G + EA   I ++ + S   PD + 
Sbjct: 588 RVPE-ARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNV-EAAGEILELMAKSGVGPDCFA 645

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ L+    K  R D    +   M   GI+ +AVT+N ++ G  K  K +   S F  M+
Sbjct: 646 YNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEML 705

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E     P + +   +I   G +G + +    + E    G+  +  T   L  S  +AG  
Sbjct: 706 EKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRI 765

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            + + +++ M K    P V  Y+ +I     +  ++   + F++M  RG  PN +TY  L
Sbjct: 766 PEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 825

Query: 248 VSAYSKAGLIMKVDSI 263
              +  AG  + ++++
Sbjct: 826 RRGFRAAGRALDLEAV 841



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 110/251 (43%), Gaps = 37/251 (14%)

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
           L EM   G+    V  N +++G  KA+K ++    F  M  S GC P I + N++IS   
Sbjct: 8   LKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEM-PSMGCEPTIVSYNTVISGLA 66

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
           +   I+KM++ Y  FN                            S++D   +    P V+
Sbjct: 67  S---IDKMDEAYKFFN----------------------------SMIDNGCE----PDVI 91

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            +  +I  F KAG  +       +   R  +P+   Y S++  Y KAG +     IL ++
Sbjct: 92  AFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFKILEEM 150

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
             +  I D   +  +I    + G V++  ELF  M++  C+ D +TF T+I+A +  G  
Sbjct: 151 LAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKL 210

Query: 328 EAAQNLENKMI 338
           + A  L  +MI
Sbjct: 211 DEACELYREMI 221


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 34/375 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L KC++ ++A  L E M   G  P+V  Y ++++ + ++  +DEA   +  M +   C P
Sbjct: 119 LCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVA-EGCHP 177

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------F 116
           D+ TY+ LI    K        ++L E++  G     VTY+T+IDG  KA +       F
Sbjct: 178 DIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIF 237

Query: 117 EEMESSFSAMVES---GG---------------------CHPDIFTLNSMISAYGNSGNI 152
           EEM  + +A+  +   GG                     C PD+ T  +++SA+   G +
Sbjct: 238 EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRL 297

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           +   + + +     +  D+ T   L       G  +    +++ + +R   PT+ TYN V
Sbjct: 298 DDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCV 357

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV--ENS 270
           ++ + KA  + K EE     + RG  PN++TY  LV+   +AG   +    L Q+  E  
Sbjct: 358 VDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGG 417

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
                   +  I+ A  + G  +   + +  M +R  VP   TFAT++ A       + A
Sbjct: 418 PCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQA 477

Query: 331 QNLENKMIAMKENSG 345
             L  +MI      G
Sbjct: 478 HELLEEMIKYGHTPG 492



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 150/313 (47%), Gaps = 5/313 (1%)

Query: 21  LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80
           ++D   P    YT LV    ++  L +A   + +M S     PD  T +++++S     R
Sbjct: 31  MNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARH-VPDNTTLTVVVQSLCLGDR 89

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            D   +++ EM + G+  +A+TY+ ++DG  K ++ +E  +    M E  GC P + T N
Sbjct: 90  VDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAER-GCAPTVVTYN 148

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           S+I+ +  +  +++   +  +    G   DI T   L   + ++    +   ++  + +R
Sbjct: 149 SIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRR 208

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
            F P +VTY+ VI+   KAG +    + F++M      P +ITY SL+  Y +AG + + 
Sbjct: 209 GFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGDMDEA 265

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +L ++ +     D   +  ++SA+ + G ++   ELF  M      PD +TF +++  
Sbjct: 266 IRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDG 325

Query: 321 YNALGMTEAAQNL 333
               G  E A  L
Sbjct: 326 LCGEGRMEDALEL 338



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 133/320 (41%), Gaps = 5/320 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  L E ML  G+  +   Y+ALV    +   LDEA + +  M     C P V TY+ 
Sbjct: 91  DDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAE-RGCAPTVVTYNS 149

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    +  R D     + +M   G     +TY  +I G+ K++           +   G
Sbjct: 150 IITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRG 209

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PDI T +++I     +G +      + E   M       T N L   Y RAG  D+ 
Sbjct: 210 F-TPDIVTYSTVIDGLCKAGRLRDAVDIFEE---MSCAPTAITYNSLIGGYCRAGDMDEA 265

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M      P VVTY  ++  F K G ++   E F++M    + P+ +T+ SLV  
Sbjct: 266 IRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDG 325

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G +     +L ++           +NC++  Y +A  V K  EL    + R  VP+
Sbjct: 326 LCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPN 385

Query: 311 NITFATMIQAYNALGMTEAA 330
            +T+  ++      G T+ A
Sbjct: 386 TVTYNILVAGCCRAGRTDQA 405



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 11/302 (3%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK  +   A  +FE M      P+   Y +L+  Y ++G +DEA   +  M  V 
Sbjct: 220 VIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKM--VD 274

Query: 60  D-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           D C PDV TY+ L+ +  K  R D   ++  +M    +    VT+ +++DG     + E+
Sbjct: 275 DKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMED 334

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  +   G C P I+T N ++  Y  +  + K E+   +F   G   +  T NIL 
Sbjct: 335 ALELLEEITRRG-CPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILV 393

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFF-FPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
               RAG  D+    +D +       PT V  Y I+++   + G  +   +++++M  RG
Sbjct: 394 AGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRG 453

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             P + T+ ++V A  KA    +   +L ++            + ++SAY +AG ++K  
Sbjct: 454 YVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKAD 513

Query: 297 EL 298
           EL
Sbjct: 514 EL 515



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 124/263 (47%), Gaps = 10/263 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   M+ D   P V  YT L+SA+ + G LD+A+     M + +   PDV T++ 
Sbjct: 263 DEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVA-NKLSPDVVTFTS 321

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA---KKFEEMESSFSAMV 127
           L+       R +   ++L E++  G   +  TYN ++DGY KA   +K EE+ + F    
Sbjct: 322 LVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADF---- 377

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG--VKADIQTLNILTKSYGRAG 185
            S G  P+  T N +++    +G  ++  ++ ++ N  G      +    I+  +  R G
Sbjct: 378 RSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDG 437

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D      + M +R + P   T+  V+    KA   ++  E  ++M   G  P   T  
Sbjct: 438 RTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCD 497

Query: 246 SLVSAYSKAGLIMKVDSILRQVE 268
           ++VSAY +AG+I K D +  ++ 
Sbjct: 498 AVVSAYCRAGMIQKADELASELR 520



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 110/239 (46%), Gaps = 6/239 (2%)

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWY 159
           +TY  ++ G  KA++  +       MV +   H PD  TL  ++ +      ++   +  
Sbjct: 40  LTYTKLVHGLSKARRLRDAVQVLQEMVSAR--HVPDNTTLTVVVQSLCLGDRVDDARELV 97

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
            E    G+ A+  T + L     +    D+  ++++ M +R   PTVVTYN +I  F +A
Sbjct: 98  EEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRA 157

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
             +++   + ++M   G  P+ ITY +L+  + K+  + +   +L +V       D   +
Sbjct: 158 RRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTY 217

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + +I    +AG +    ++F   +E  C P  IT+ ++I  Y   G  + A  L  KM+
Sbjct: 218 STVIDGLCKAGRLRDAVDIF---EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMV 273



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK  Q  +A  L     S G  P+   Y  LV+   ++G  D+A   ++ + S  
Sbjct: 357 VVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG 416

Query: 60  -DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C   V  Y+I++ +  +  R D   +   EM   G   +A T+ T++    KA + ++
Sbjct: 417 GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQ 476

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
                  M++ G   P   T ++++SAY  +G I+K ++  +E  L
Sbjct: 477 AHELLEEMIKYGH-TPGPGTCDAVVSAYCRAGMIQKADELASELRL 521


>gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 494

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 148/298 (49%), Gaps = 11/298 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           VY+ L+S  G+ G +  A    ++M++ S C+PD   Y+ LI +    H  D  + ++  
Sbjct: 129 VYSKLISIMGKKGQIRMAMWLFSEMRN-SGCRPDTSVYNALITA--HLHSKDKAKALVKV 185

Query: 91  MSYL----GIE-CSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           +SY     G+E C    VTYN +   + +A K +++ + F  + ES     DI+T N ++
Sbjct: 186 LSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESV-VSADIYTYNGVM 244

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AYG +GNI++ME          +K DI + N+L  SYG+  ++DKM  V   + +    
Sbjct: 245 DAYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKER 304

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT+ T+N +I  +GKA   EK EE F+KMK  G  P+ +T  SL+  Y     + K   I
Sbjct: 305 PTLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREI 364

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
              + NS   +     N ++  Y   G   +   LF +       PD+ T+  + +AY
Sbjct: 365 FDGMVNSGKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYKAY 422



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 156/336 (46%), Gaps = 8/336 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G +P   VY AL++A+     ++  L +  S    MK +
Sbjct: 136 IMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYFEKMKGM 195

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             CKP++ TY+IL ++  +  + D +  +  ++    +     TYN ++D YGK    +E
Sbjct: 196 ERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGKNGNIKE 255

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           ME   + M +S    PDI + N +I +YG     +KME+ +        +  + T N + 
Sbjct: 256 MELMLARM-KSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMI 314

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A + +K   V   M+   + P+ VT   +I  +G    + K  E F  M + G +
Sbjct: 315 TNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSGKE 374

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
               T  +++  Y   GL ++ D +     N  V  D+  +  +  AY +A   E + +L
Sbjct: 375 VRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKADKKELLEKL 434

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
              M +   +P+   F   + A   +G ++  QNL+
Sbjct: 435 LKNMDKAGIIPNKRFF---LDALGTIGSSQENQNLQ 467



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 150/314 (47%), Gaps = 27/314 (8%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV------------- 101
           +++ SD +P + T    ++     H F L E++     +L  EC  V             
Sbjct: 69  IRNFSDKEPLLKTLDKYVRVMRTEHCFLLFEELGKRDKWL--ECLEVFRWMQKQRWYIAD 126

Query: 102 --TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKW 158
              Y+ +I   GK  +       FS M  SG C PD    N++I+A+ +S +  K + K 
Sbjct: 127 NGVYSKLISIMGKKGQIRMAMWLFSEMRNSG-CRPDTSVYNALITAHLHSKDKAKALVKV 185

Query: 159 YNEFNLMG----VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
            + F  M      K +I T NILT+++ +A   D++ ++   + +      + TYN V++
Sbjct: 186 LSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMD 245

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +GK G+I++ME    +MK   +KP+ I++  L+ +Y K  L  K++ + + +  S    
Sbjct: 246 AYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERP 305

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
             P FN +I+ YG+A   EK  E+F  MK+    P  +T  ++I  Y        A+ + 
Sbjct: 306 TLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIF 365

Query: 335 NKMIAMKENSGKKL 348
           + M+    NSGK++
Sbjct: 366 DGMV----NSGKEV 375


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 169/343 (49%), Gaps = 10/343 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVM--LSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           +V+ G CK     S  +EV+  + DG  + P +  Y+ +++ + + G +D A   + +M 
Sbjct: 14  VVVNGLCKA-RLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMV 72

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           +     PDV TY+ ++    +  + D   +++ EM   G+E    T++ +I G+  A+K 
Sbjct: 73  TRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKV 132

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 173
           +E    +  ++ S  C  D  + +++I+       I +  + + E  +      K D+ T
Sbjct: 133 DEALKLYKEILTSS-CRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVT 191

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
              L   + ++G  +K   ++  M+ R   P VVTY+ ++    KAG +++  + F++M 
Sbjct: 192 YTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMT 251

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +G  PN +TY +L+     A  +     ++ ++  +    DT  +N ++  Y + G +E
Sbjct: 252 SKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIE 311

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAY-NALGMTEAAQNLEN 335
           +  +LF  M  + C+PD IT+  +++ + NA  + EA   LEN
Sbjct: 312 EAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLEN 354



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 19/350 (5%)

Query: 2   VMLGKCKQPE---QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V+ G CKQ E      +L E++  DG+ P V  YT++V    + G +D A   + +MK +
Sbjct: 51  VINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMK-L 109

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK--- 115
              +PD +T+S LI       + D   K+  E+        AV+ + +I G  + ++   
Sbjct: 110 KGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGE 169

Query: 116 ----FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
               F+EME     M E G   PD+ T  ++I  +  SGN+EK  K            ++
Sbjct: 170 AYELFQEME-----MREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNV 224

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
            T + L     +AG  D+   +   M  +   P VVTY  +I     A  ++       +
Sbjct: 225 VTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDE 284

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M       ++++Y +L+  Y + G I +   + +++     + D   + C++  +  A  
Sbjct: 285 MTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASR 344

Query: 292 VEKMGELFLTMKERHCV-PDNITFATMIQAYN-ALGMTEAAQNLENKMIA 339
           +E+   L   MK    + PD +T++ ++  Y+ A    EAA+ ++ +MIA
Sbjct: 345 LEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQ-EMIA 393



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 134/304 (44%), Gaps = 14/304 (4%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  + E+A  LF+ M +    P    YT LV  +  +  L+EA   + +MK+ +   
Sbjct: 303 GYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 362

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TYSI++   ++  RF    + + EM    +  +AVTY+++IDG  KA +       
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV 422

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              + +     PD+ T   +I     +   E+      E     V+  + T N +  +  
Sbjct: 423 LKNVDK-----PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALC 477

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G  D+   ++  M      P +VTY  ++E F + G +E   E F+ M+ +  K +S 
Sbjct: 478 RLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSA 537

Query: 243 -------TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
                   + +L+    KA  I K  +++ ++ + +          I+    +AG  E+ 
Sbjct: 538 ANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEA 597

Query: 296 GELF 299
           G+L 
Sbjct: 598 GKLI 601



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 132/331 (39%), Gaps = 42/331 (12%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  QA  LF  M S G  P+V  YT L+     +  +D A   +++M +   C 
Sbjct: 233 GLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC-CP 291

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D  +Y+ L+    +  R +  +++  EM+        +TY  ++ G+  A + EE    
Sbjct: 292 ADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFL 351

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M  + G  PD+                                    T +I+   Y 
Sbjct: 352 LENMKTAAGIDPDVV-----------------------------------TYSIVVAGYS 376

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           RA  + +    +  M  R   P  VTY+ +I+   KAG +    E  K +     KP+ +
Sbjct: 377 RAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVD----KPDVV 432

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  ++          +  ++L ++ N  V      FN +I A  + GD+++  +L + M
Sbjct: 433 TYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAM 492

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                 P  +T+ T+++ ++  G  E A  L
Sbjct: 493 AAHGLEPGMVTYTTLLEGFSRTGRMEIAYEL 523



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 3/134 (2%)

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLI 257
           + F  P   TYN+V+    KA    K  E  K+M+  + + P+ +TY ++++ + K G +
Sbjct: 2   REFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEM 61

Query: 258 MKVDSILRQVENSD-VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
            +   ILR++   D +  D   +  ++    + G +++  E+   MK +   PD  TF+ 
Sbjct: 62  DRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSA 121

Query: 317 MIQAY-NALGMTEA 329
           +I  + NA  + EA
Sbjct: 122 LITGWCNARKVDEA 135


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 148/297 (49%), Gaps = 4/297 (1%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLI 84
           P+V V+ A++  Y +SG  D+A   ++ M+   D +PD+ +++ LI +  K       + 
Sbjct: 59  PTVQVFNAMMGVYARSGRFDDARQLLDAMRD-QDIEPDLVSFNTLINARAKSGCLAAGVA 117

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            ++L E+   G+   A+TYNT+I    +    ++  + F  M+ S  C PD++T N+M+S
Sbjct: 118 LELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASE-CRPDLWTYNAMVS 176

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
            +G  G  ++ E  + E    G + D  T N L  ++ + G  +++  V + + K  F  
Sbjct: 177 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 236

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
             +TYN +I  +GK G ++     + +M+  G  P+++TY  LV +  K   I +   +L
Sbjct: 237 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVL 296

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            ++ ++ +      F+ +I AY ++G  +     F  M E    PD + +  M+  +
Sbjct: 297 EEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 353



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 152/314 (48%), Gaps = 8/314 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE--AFSTINDMKSVSDCKPDVYTY 68
           + A  L + M    ++P +  +  L++A  +SG L    A   +++++     +PD  TY
Sbjct: 78  DDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAG-LRPDAITY 136

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSFSAM 126
           + LI +C++    D    +  EM  +  EC     TYN ++  +G+  K +E E  F  +
Sbjct: 137 NTLISACSQGSNLDDAVAVFEEM--IASECRPDLWTYNAMVSVHGRCGKAQEAELMFKEL 194

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           VE G   PD  T NS++ A+   G++E++E+   E    G + D  T N +   YG+ G 
Sbjct: 195 VEKG-FQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGR 253

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D    + D M+     P  VTY +++++ GK   I +  +  ++M   G+KP  +T+ +
Sbjct: 254 LDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSA 313

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+ AY+K+G     +    ++  S V  D   +  ++  + ++ +  K+  L+  M +  
Sbjct: 314 LICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDG 373

Query: 307 CVPDNITFATMIQA 320
             PD+  +  ++ A
Sbjct: 374 YKPDDGLYQVLLAA 387



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 166/371 (44%), Gaps = 40/371 (10%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK- 73
           LL EV  + GL+P    Y  L+SA  Q   LD+A +   +M + S+C+PD++TY+ ++  
Sbjct: 120 LLHEVRQA-GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIA-SECRPDLWTYNAMVSV 177

Query: 74  --SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
              C K    +L+ K L E    G +  AVTYN+++  + K    E +E     +V++G 
Sbjct: 178 HGRCGKAQEAELMFKELVEK---GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAG- 233

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              D  T N+MI  YG  G ++     Y+E   +G   D  T  +L  S G+     +  
Sbjct: 234 FRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAG 293

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V++ M      PT+VT++ +I  + K+G  +  E  F +M   G+KP+ + Y  ++  +
Sbjct: 294 KVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 353

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-------GDVEKMGELF----- 299
           +++    K+  + R +       D   +  +++A  +        G ++ M  +F     
Sbjct: 354 ARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPL 413

Query: 300 ---------------LTMKERHCV----PDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
                           ++ +R C+    PD  +  +++ AY  +G  E   +L   +   
Sbjct: 414 VISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQH 473

Query: 341 KENSGKKLIQC 351
             NS   + +C
Sbjct: 474 VPNSHNLISEC 484



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 131/300 (43%), Gaps = 41/300 (13%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA-------------------------- 38
           G+C + ++A L+F+ ++  G +P    Y +L+ A                          
Sbjct: 179 GRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDG 238

Query: 39  ---------YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
                    YG+ G LD A    ++M+++  C PD  TY++L+ S  K  R     K+L 
Sbjct: 239 ITYNTMIHMYGKMGRLDLALGLYDEMRAIG-CTPDAVTYTVLVDSLGKMDRISEAGKVLE 297

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           EM+  G++ + VT++ +I  Y K+ + ++ E +F  MVES G  PD      M+  +  S
Sbjct: 298 EMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVES-GVKPDRLAYLVMLDVFARS 356

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
               K+   Y      G K D     +L  +  +   +D++  V+  M+  F    +V  
Sbjct: 357 DETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVIS 416

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           +I+I    KA  I +     K+   +G +P+  +  S++ AY K G   K  S+L  +  
Sbjct: 417 SILI----KAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQ 472



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 147/311 (47%), Gaps = 2/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  +F++M+  G  P+V+    ++ A    G LDE +  + +++ + D K    T  +
Sbjct: 639 EHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDL-DIKISKSTVLL 697

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++++  K      + KI   M   G   +   Y  +I      K+F ++E   + M E  
Sbjct: 698 MLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEM-EGA 756

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD+  LN+++  Y  +GN ++  + Y+     G++ D  T N L   Y R    ++ 
Sbjct: 757 GFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEG 816

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +++  M KR   P + +Y I++   GKA   E+ +  F++M+ +G + N   Y  ++  
Sbjct: 817 FTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKI 876

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y  A    K + +L  ++   +       + ++++YG +G  ++  ++  ++K  +    
Sbjct: 877 YRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEIS 936

Query: 311 NITFATMIQAY 321
            + ++T++ AY
Sbjct: 937 TLPYSTVLDAY 947



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 133/307 (43%), Gaps = 2/307 (0%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           ++ AL+ AY +SGL + A   I D+       P V + + ++++     R D +  ++ E
Sbjct: 624 IWNALIHAYAESGLYEHA-RAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQE 682

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           +  L I+ S  T   +++ + KA    E+   ++ M ++ G  P++     MIS   ++ 
Sbjct: 683 LQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGM-KAAGYLPNMHLYRIMISLLCHNK 741

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
               +E    E    G K D+  LN L   Y   G +D+   V   + +    P   TYN
Sbjct: 742 RFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYN 801

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I  + +    E+      +M  RG+ P   +Y  L++A  KA L  + D +  ++   
Sbjct: 802 TLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTK 861

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              L+   ++ ++  Y  A +  K   L   MKE    P   T   ++ +Y   G  + A
Sbjct: 862 GYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEA 921

Query: 331 QNLENKM 337
           + + N +
Sbjct: 922 EKVLNSL 928



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 126/306 (41%), Gaps = 56/306 (18%)

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           DC  D+Y Y  LI    +   F    ++  +M +LGI  S   Y +II       +    
Sbjct: 516 DC--DLYEY--LITYLEEAELFPEACQVFCDMQFLGIVPSQKIYQSII---YTCCRLGFP 568

Query: 120 ESSFSAMVESGGCHPDIFTLN---SMISAYGNSGNIEKMEKWYNEFNLM-GVK----ADI 171
           E+++  M ++      +  L+   +MI AYG      K++ W    N + G+K     D 
Sbjct: 569 ETAYQLMDDAARSDISLNILSCRVAMIEAYG------KLKLWQQAENFVKGLKQESGVDR 622

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN--------------------- 210
           +  N L  +Y  +G+Y+  R++ D M K+   PTV + N                     
Sbjct: 623 RIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQE 682

Query: 211 --------------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
                         +++E F KAG + ++ + +  MK  G  PN   Y  ++S       
Sbjct: 683 LQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKR 742

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
              V+ ++ ++E +    D    N ++  Y   G+ ++  E++ ++ E    PD  T+ T
Sbjct: 743 FRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNT 802

Query: 317 MIQAYN 322
           +I  Y+
Sbjct: 803 LIVMYS 808



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 151/385 (39%), Gaps = 68/385 (17%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  +  +A  + E M   GLKP++  ++AL+ AY +SG  D+A  T + M   S  KP
Sbjct: 283 LGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVE-SGVKP 341

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILA---EMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           D   Y +++     F R D   K++     M   G +     Y  ++    K  + +E+E
Sbjct: 342 DRLAYLVMLDV---FARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIE 398

Query: 121 SSFSAM--------------------VESG----------GCHPDIFTLNSMISAYGNSG 150
                M                    +  G          G  PD  +L S++ AY   G
Sbjct: 399 GVIQDMEAVFEMNPLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMG 458

Query: 151 NIEK---MEKWY-----NEFNLMGVKADIQTL----NIL--TKSYGRAGMYDKMRSVMDF 196
             EK   + +W      N  NL+  +  I  L     I+   + Y R  M  +      F
Sbjct: 459 KHEKGLSLLEWIRQHVPNSHNLIS-ECSIMLLCKNGKIVDAIQEYSRKQMLKR----GSF 513

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
            Q    +  ++TY    E F +A  +      F  M+  G+ P+   Y S++    + G 
Sbjct: 514 GQDCDLYEYLITYLEEAELFPEACQV------FCDMQFLGIVPSQKIYQSIIYTCCRLGF 567

Query: 257 IMKVDSILRQVENSDVILDTPFFNC---IISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
                 ++     SD+ L+    +C   +I AYG+    ++       +K+   V D   
Sbjct: 568 PETAYQLMDDAARSDISLN--ILSCRVAMIEAYGKLKLWQQAENFVKGLKQESGV-DRRI 624

Query: 314 FATMIQAYNALGMTEAAQNLENKMI 338
           +  +I AY   G+ E A+ + + MI
Sbjct: 625 WNALIHAYAESGLYEHARAIFDIMI 649



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 137/326 (42%), Gaps = 12/326 (3%)

Query: 1   MVML---GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           +VML    +  +  +  +L+  M+ DG KP   +Y  L++A  +    DE    I DM++
Sbjct: 347 LVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEA 406

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           V +  P V + SILIK+        L+++   +    G E    +  +I+D Y K  K E
Sbjct: 407 VFEMNPLVIS-SILIKAECISQGASLLKRACLQ----GYEPDGKSLLSILDAYEKMGKHE 461

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLN 175
           +  S    + +      ++ +  S++    N   ++ ++++  +  L       D     
Sbjct: 462 KGLSLLEWIRQHVPNSHNLISECSIMLLCKNGKIVDAIQEYSRKQMLKRGSFGQDCDLYE 521

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L      A ++ +   V   MQ     P+   Y  +I T  + G  E   +        
Sbjct: 522 YLITYLEEAELFPEACQVFCDMQFLGIVPSQKIYQSIIYTCCRLGFPETAYQLMDDAARS 581

Query: 236 GMKPNSIT-YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            +  N ++   +++ AY K  L  + ++ ++ ++    + D   +N +I AY ++G  E 
Sbjct: 582 DISLNILSCRVAMIEAYGKLKLWQQAENFVKGLKQESGV-DRRIWNALIHAYAESGLYEH 640

Query: 295 MGELFLTMKERHCVPDNITFATMIQA 320
              +F  M ++  +P   +   M++A
Sbjct: 641 ARAIFDIMIKKGPLPTVESVNGMMRA 666



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 2/141 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK K  EQA LLFE M + G + +  +Y  ++  Y  +    +A   ++ MK     +P 
Sbjct: 843 GKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKE-DGIEPT 901

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + T  IL+ S       D  EK+L  +    +E S + Y+T++D Y + + +    +   
Sbjct: 902 IATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLL 961

Query: 125 AMVESGGCHPDIFTLNSMISA 145
            M +  G  PD     S I A
Sbjct: 962 EM-KRDGVEPDHQVWTSFIRA 981


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 157/336 (46%), Gaps = 10/336 (2%)

Query: 8   KQPEQASLLFEVMLSDG----LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           ++ E+A  L  +M+ DG      P V  Y  +++ +   G +D+A+S   +M  VS   P
Sbjct: 169 RRAEEARELLHMMV-DGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM-GVS---P 223

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TY+ +I    K    D  E +  +M   G++ + VTYNTIIDG  KA++ +  E  F
Sbjct: 224 DVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVF 283

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+ G   P   T N++I     +  +++ E  + +    GVK D  T N +     +
Sbjct: 284 QKMVDKG-VKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCK 342

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A   DK   V   M  +   P  +TY I+I+   KA  +++ E  F++M  +G+KPN+ T
Sbjct: 343 AQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGT 402

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+  Y   G   +V   ++++   D+  D   +  ++    + G   +   LF +M 
Sbjct: 403 YNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMI 462

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +   P    +  M+  Y   G      +L N M+A
Sbjct: 463 RKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVA 498



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 149/337 (44%), Gaps = 2/337 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A  +F+ M+  G+KP    Y  ++    ++  +D+A      M      KP
Sbjct: 305 LCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMID-KGVKP 363

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY+I+I    K    D  E +  +M   G++ +  TYN +I GY    ++EE+    
Sbjct: 364 DNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRI 423

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  +    PD+FT   ++     +G   +    ++     G+K  +    I+   YG+
Sbjct: 424 KEM-SAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGK 482

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   +M  +++ M      P    +N VI  + K   I+++   F KMK +G+ PN +T
Sbjct: 483 KGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVT 542

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+ A  K G +        Q+ N  V  +   FN ++         EK+ ELFL M 
Sbjct: 543 YGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEML 602

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +   PD + F T++      G    A+ L + M+ M
Sbjct: 603 NQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCM 639



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 163/353 (46%), Gaps = 11/353 (3%)

Query: 1   MVMLGKCKQPEQASL-LFEVMLSD---GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           +V   KC    + ++  F  ML D    + P    Y+ ++  + + G L+  F+    + 
Sbjct: 52  VVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLIL 111

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
                  D+    +L   C      + +  +L +M  +G     V+YNT++ G    ++ 
Sbjct: 112 KTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRA 171

Query: 117 EEMESSFSAMV--ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           EE       MV  +   C PD+ + N +I+ + N G ++K    Y+ F  MGV  D+ T 
Sbjct: 172 EEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKA---YSLFLEMGVSPDVVTY 228

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N +     +A   D+   V   M ++   P  VTYN +I+   KA  ++  E  F+KM  
Sbjct: 229 NTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVD 288

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           +G+KP+++TY +++    KA  + + + + +Q+ +  V  D   +N II    +A  ++K
Sbjct: 289 KGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDK 348

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI--AMKENSG 345
              +F  M ++   PDN+T+  +I         + A+ +  +MI   +K N+G
Sbjct: 349 AEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNG 401



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 148/330 (44%), Gaps = 6/330 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--CKPDVYTY 68
           E   +L   M   G +  V  Y  L+         +EA   ++ M    D  C PDV +Y
Sbjct: 137 EAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSY 196

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I+I       + D    +  EM   G+    VTYNTIIDG  KA++ +  E  F  MVE
Sbjct: 197 NIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVE 253

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G   P+  T N++I     +  ++  E  + +    GVK    T N +     +A   D
Sbjct: 254 KG-VKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVD 312

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   V   M  R   P  VTYN +I+   KA  I+K E  F++M  +G+KP+++TY  ++
Sbjct: 313 RAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIII 372

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               KA  + + + + +Q+ +  V  +   +NC+I  Y   G  E++ +    M      
Sbjct: 373 DGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLE 432

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMI 338
           PD  T+  ++      G    A++L + MI
Sbjct: 433 PDVFTYGLLLDYLCKNGKCNEARSLFDSMI 462



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 150/317 (47%), Gaps = 5/317 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GKC +   A  LF+ M+  G+KPSV +Y  ++  YG+ G L E    +N M + +   P+
Sbjct: 449 GKCNE---ARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVA-NGISPN 504

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              ++ +I +  K    D +  I  +M   G+  + VTY T+ID   K  + ++    F+
Sbjct: 505 HRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFN 564

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+  G   P+    NS++         EK+E+ + E    G++ DI   N +  +  + 
Sbjct: 565 QMINEG-VTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKE 623

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   + R ++D M      P V++YN +I+    A  +++  +    M   G+KPN ++Y
Sbjct: 624 GRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSY 683

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+  Y KAG I     + R++    V      +N I++   ++G   +  EL++ M +
Sbjct: 684 NTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIK 743

Query: 305 RHCVPDNITFATMIQAY 321
              +    T++ ++  +
Sbjct: 744 SRKLWSICTYSIILDGF 760



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 150/336 (44%), Gaps = 2/336 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A  +F+ M+  G+KP    YT ++    ++  +D A      M      KP
Sbjct: 340 LCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMID-KGVKP 398

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TY+ LI       +++ + + + EMS   +E    TY  ++D   K  K  E  S F
Sbjct: 399 NNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLF 458

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            +M+  G   P +     M+  YG  G + +M    N     G+  + +  N +  +Y +
Sbjct: 459 DSMIRKG-IKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAK 517

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
             M D++  +   M+++   P VVTY  +I+   K G ++     F +M + G+ PN++ 
Sbjct: 518 RAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVV 577

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + SLV          KV+ +  ++ N  +  D  FFN ++    + G V +   L  +M 
Sbjct: 578 FNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMV 637

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
                PD I++ T+I  +      + A  L + M++
Sbjct: 638 CMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVS 673



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 145/318 (45%), Gaps = 2/318 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L  +M+++G+ P+  ++  ++ AY +  ++DE       MK      P+V TY  LI + 
Sbjct: 492 LLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQ-QGLSPNVVTYGTLIDAL 550

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R D       +M   G+  + V +N+++ G     K+E++E  F  M+  G   PD
Sbjct: 551 CKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQG-IRPD 609

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I   N+++      G + +  +  +    MG+K D+ + N L   +  A   D+   ++D
Sbjct: 610 IVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLD 669

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M      P +V+YN ++  + KAG I+     F++M  +G+ P   TY ++++   ++G
Sbjct: 670 GMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSG 729

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
              +   +   +  S  +     ++ I+  + +    ++  ++F ++       D ITF 
Sbjct: 730 RFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFN 789

Query: 316 TMIQAYNALGMTEAAQNL 333
            MI      G  E A +L
Sbjct: 790 IMIDGLFKGGRKEDAMDL 807



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 151/373 (40%), Gaps = 35/373 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A  +F+ M+  G+KP+   Y  L+  Y  +G  +E    I +M S  D +P
Sbjct: 375 LCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEM-SAHDLEP 433

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV+TY +L+    K  + +    +   M   GI+ S   Y  ++ GYGK     EM    
Sbjct: 434 DVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLL 493

Query: 124 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
           + MV +G                                  G  P++ T  ++I A    
Sbjct: 494 NLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKL 553

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G ++     +N+    GV  +    N L         ++K+  +   M  +   P +V +
Sbjct: 554 GRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFF 613

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N V+    K G + +       M   G+KP+ I+Y +L+  +  A  + +   +L  + +
Sbjct: 614 NTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVS 673

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
           + +  +   +N ++  Y +AG ++    LF  M  +   P   T+ T++      G    
Sbjct: 674 AGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSE 733

Query: 330 AQNLENKMIAMKE 342
           A+ L   MI  ++
Sbjct: 734 ARELYVNMIKSRK 746



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 133/289 (46%), Gaps = 4/289 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+   CK+    +A  L + M+  GLKP V  Y  L+  +  +  +DEA   ++ M S +
Sbjct: 616 VLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVS-A 674

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KP++ +Y+ L+    K  R D    +  EM   G+     TYNTI++G  ++ +F E 
Sbjct: 675 GLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEA 734

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              +  M++S      I T + ++  +  +   ++  K +     M ++ DI T NI+  
Sbjct: 735 RELYVNMIKSRKLW-SICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMID 793

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G  +    +   +      P+VVTY ++ E   + G +E+++  F  M+  G  P
Sbjct: 794 GLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAP 853

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           NS    +L+      G I +  + L +++  +  L+    + +IS + +
Sbjct: 854 NSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSR 902



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 149/328 (45%), Gaps = 6/328 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+   LF  ML+ G++P +  +  ++    + G + EA   I+ M  +   KPDV +Y+ 
Sbjct: 592 EKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMG-LKPDVISYNT 650

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       R D   K+L  M   G++ + V+YNT++ GY KA + +     F  M+  G
Sbjct: 651 LIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKG 710

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA--DIQTLNILTKSYGRAGMYD 188
              P + T N++++    SG   +  + Y   N++  +    I T +I+   + +   +D
Sbjct: 711 -VTPGVETYNTILNGLFRSGRFSEARELY--VNMIKSRKLWSICTYSIILDGFCKNNCFD 767

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   +   +        ++T+NI+I+   K G  E   + F  +   G+ P+ +TY  + 
Sbjct: 768 EAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIA 827

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               + G + ++D +   +E S    ++   N +I      G++ + G     + E++  
Sbjct: 828 ENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFS 887

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENK 336
            +  T + +I  ++     + A++L  K
Sbjct: 888 LEASTTSMLISLFSREEYQQHAKSLPEK 915


>gi|255661214|gb|ACU25776.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 426

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 57
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 58  --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                    S   PD+  Y+ +I    K   F     +++EM   G+  + V+Y+T++  
Sbjct: 64  ISIFSKLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLTM 123

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           Y + K+F E  S F+ M E   C  D+ T N MI  YG     ++ +K +     MG++ 
Sbjct: 124 YVENKRFREALSVFAEMREIK-CLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M++RG++PNSITY +++S + K G + +   + +++  S + +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRVSGIEIDQVLYQTMIVAYERA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     P+NI   T I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PNNIPRDTAIHILAGAGRIEEA 339



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 159/360 (44%), Gaps = 39/360 (10%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  +   G+ P +  Y ++++ +G++ L  EA S I++M+ V+   P+  +YS L
Sbjct: 62  KAISIFSKLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMR-VAGVMPNTVSYSTL 120

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    +  RF     + AEM  +       T N +ID YG+    +E +  F  M    G
Sbjct: 121 LTMYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGM-RKMG 179

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ---TLNILTKSYGRAGMYD 188
             P++ + N+++  YG++   E   +  + F LM  K  +Q   T N +   YG+   ++
Sbjct: 180 IEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHE 236

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK--------------- 233
           K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++               
Sbjct: 237 KANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRVSGIEIDQVLYQTMI 296

Query: 234 ----------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
                           H   +PN+I   + +   + AG I +   + RQ  ++  + D  
Sbjct: 297 VAYERAGLVAHAKRLLHELKRPNNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDIT 356

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            F  +IS + +      + E+F  M+     PD+   A ++ AY  L   E A  +  +M
Sbjct: 357 VFERMISLFSKYKKYTNVVEVFEKMRGLGYFPDSNVIAVVLNAYGKLHKFENANGVYMEM 416



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 131/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   NSMI+ +G +    +     +E  + GV  +  + + L   Y 
Sbjct: 67  FSKLKRSG-ITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+    ++ ++ F  M+  G++PN +
Sbjct: 126 ENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  D++ +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKDIVQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           + R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RDRALSPDRYTYSTLITHFGKEGLFDGALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F K+K  G+ P+ + Y S+++ + KA L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSKLKRSGITPDLVAYNSMINVFGKARLFREARSLISEMRVAGVMPNTVSYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  L M + A  L
Sbjct: 121 LTMYVENKRFREALSVFAEMREIKCLLDLTTCNIMIDVYGQLDMAKEADKL 171


>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 426

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 57
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKA 63

Query: 58  --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY ++
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERS 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 151/337 (44%), Gaps = 10/337 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S   +M+ +  C 
Sbjct: 88  VFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIK-CL 146

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 147 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 206

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +      ++ T NSM+  YG +   EK      E    G++ +  T + +   +G
Sbjct: 207 FRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWG 265

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + G  D  R+ M F + R     +  V Y  +I  + ++G +     + K++ H   +P+
Sbjct: 266 KVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIVAYERSGLVA----HAKRLLHELKRPD 319

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +I     +   + AG I +   + RQ  ++  + D   F  +I  + +      + E+F 
Sbjct: 320 NIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFD 379

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M      PD+   A ++ AY  L   + A ++  +M
Sbjct: 380 KMCGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/362 (20%), Positives = 152/362 (41%), Gaps = 74/362 (20%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +      P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G+  + + Y +++ AY 
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 253 K-------------------------------AGLIMKVDSILRQVENSDVILDTPFFN- 280
           +                               AG I +   + RQ  ++  + D   F  
Sbjct: 301 RSGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 281 ----------------------------------CIISAYGQAGDVEKMGELFLTMKERH 306
                                              +++AYG+  + +K  ++++ M+E  
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 420

Query: 307 CV 308
           CV
Sbjct: 421 CV 422



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 102/263 (38%), Gaps = 33/263 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 160 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 218

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K +     F 
Sbjct: 219 VVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 278

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-------------------- 164
            +  S G   D     +MI AY  SG +   ++  +E                       
Sbjct: 279 KL-RSSGVDIDQVLYQTMIVAYERSGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIE 337

Query: 165 -----------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                       G   DI     +   + +   Y  +  V D M    +FP      +V+
Sbjct: 338 EATWVFRQAIDAGEVKDITVFERMIHLFSKYKKYGNVVEVFDKMCGLGYFPDSNVIALVL 397

Query: 214 ETFGKAGHIEKMEEYFKKMKHRG 236
             +GK    +K  + + +M+  G
Sbjct: 398 NAYGKLHEFDKANDVYMEMQEVG 420



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K     P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 163/344 (47%), Gaps = 8/344 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV LGK +  E   +L + M   GL+P+V  +T  +   G++G +DEA+     M     
Sbjct: 234 MVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDD-EG 292

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID---GYGKAKKFE 117
           C PD+ TY++LI +     + +  +++  +M   G +   V Y T++D    +G    F+
Sbjct: 293 CGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFK 352

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E    F + +E+ G  PD+ T   ++     + + ++    ++     G+  ++ T N L
Sbjct: 353 E----FWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTL 408

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                RAG  +    ++D M+     PT  TY   I+ FGK+G   K  E F+KMK +G+
Sbjct: 409 ICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGI 468

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            PN +   + + + ++ G + +  ++   +  + +  D+  +N ++  Y + G V++   
Sbjct: 469 VPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVN 528

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           L   M    C PD I   ++I +    G  + A  + ++M  MK
Sbjct: 529 LLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMK 572



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 2/299 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M +DG  P V  +T LV    ++   DEAF+T + M+      P+++TY+ LI    +  
Sbjct: 358 MEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRK-QGILPNLHTYNTLICGLLRAG 416

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R +   K+L  M  +G++ +A TY T ID +GK+ +  +   +F  M ++ G  P+I   
Sbjct: 417 RIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKM-KAKGIVPNIVAC 475

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N+ + +    G + + +  +N     G+  D  T N++ K Y + G  D+  +++  M +
Sbjct: 476 NASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIR 535

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P V+  N +I++  KAG +++  + F +MK   + P  +TY +L+S   K G + K
Sbjct: 536 NGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQK 595

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
              +   +       +T  FN ++  + +  +VE   ++F  M    C PD +T+ T+I
Sbjct: 596 AIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVI 654



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 143/307 (46%), Gaps = 2/307 (0%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E+A  LF+ M + G  P    +  L++ +G+SG + E F    +M S   CKPD  TY+I
Sbjct: 805  EKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMIS-RRCKPDAITYNI 863

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            +I S  K +  D       ++       +  TY  +IDG  K  + EE    F  M + G
Sbjct: 864  VISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYG 923

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
             C P+    N +I+ YG  G+ E   + +      G++ D+++  IL      AG  D+ 
Sbjct: 924  -CKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEA 982

Query: 191  RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
                + ++     P  + YN +I   GK+  +E+    + +M++RG+ P+  TY SL+  
Sbjct: 983  LYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLN 1042

Query: 251  YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               AG++ +   +  +++ + +  D   +N +I  Y  + + E    ++  M    C P+
Sbjct: 1043 LGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPN 1102

Query: 311  NITFATM 317
              T+A +
Sbjct: 1103 IGTYAQL 1109



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 149/342 (43%), Gaps = 37/342 (10%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y  L+    QSG   EA      M S    KP + TYS L+ +  K    +++  +L EM
Sbjct: 195 YNGLIHLLIQSGFCGEALEVYRRMVS-EGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
             LG+  +  T+   I   G+A K +E    F  M +  GC PD+ T   +I A  N+G 
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRM-DDEGCGPDLVTYTVLIDALCNAGQ 312

Query: 152 IEKMEKW----------------------YNEFNLM-------------GVKADIQTLNI 176
           +E  ++                       +N+F  +             G   D+ T  I
Sbjct: 313 LENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTI 372

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L     +A  +D+  +  D M+K+   P + TYN +I    +AG IE   +    M+  G
Sbjct: 373 LVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVG 432

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           ++P + TY + +  + K+G   K      +++   ++ +    N  + +  + G + +  
Sbjct: 433 VQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAK 492

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +F  ++E    PD++T+  M++ Y+ +G  + A NL ++MI
Sbjct: 493 TMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMI 534



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 138/299 (46%), Gaps = 2/299 (0%)

Query: 24   GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
            G+ P++  Y  L+    +    ++A+    DMK+V  C PD +T+++L+    K  +   
Sbjct: 783  GISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVG-CAPDAFTFNMLLAVHGKSGKITE 841

Query: 84   IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            + ++  EM     +  A+TYN +I    K+   ++    F  +V S    P   T   +I
Sbjct: 842  LFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLV-SSDFRPTPRTYGPLI 900

Query: 144  SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                  G +E+  + + E +  G K +    NIL   YG+ G  +    +   M      
Sbjct: 901  DGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIR 960

Query: 204  PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
            P + +Y I+++    AG +++   YF ++K  G+ P+ I Y  +++   K+  + +  ++
Sbjct: 961  PDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALAL 1020

Query: 264  LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
              ++ N  ++ D   +N ++   G AG VE+   ++  ++     PD  T+  +I+ Y+
Sbjct: 1021 YNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYS 1079



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 121/248 (48%), Gaps = 2/248 (0%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            GK  +  +   L++ M+S   KP    Y  ++S+  +S  LD+A     D+ S SD +P 
Sbjct: 834  GKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVS-SDFRPT 892

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              TY  LI    K  R +   ++  EMS  G + +   +N +I+GYGK    E     F 
Sbjct: 893  PRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFK 952

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             MV   G  PD+ +   ++     +G +++   ++NE    G+  D    N +    G++
Sbjct: 953  RMVNE-GIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKS 1011

Query: 185  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
               ++  ++ + M+ R   P + TYN ++   G AG +E+ +  +++++  G++P+  TY
Sbjct: 1012 QRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTY 1071

Query: 245  CSLVSAYS 252
             +L+  YS
Sbjct: 1072 NALIRGYS 1079



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 127/271 (46%), Gaps = 1/271 (0%)

Query: 63   PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            P + +Y+ LI    + H  +    +  +M  +G    A T+N ++  +GK+ K  E+   
Sbjct: 786  PTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFEL 845

Query: 123  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            +  M+ S  C PD  T N +IS+   S N++K   ++ +      +   +T   L     
Sbjct: 846  YKEMI-SRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLA 904

Query: 183  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            + G  ++   + + M      P    +NI+I  +GK G  E   + FK+M + G++P+  
Sbjct: 905  KVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLK 964

Query: 243  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            +Y  LV     AG + +      +++++ +  D   +N II+  G++  +E+   L+  M
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024

Query: 303  KERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            + R  VPD  T+ +++      GM E A+ +
Sbjct: 1025 RNRGIVPDLYTYNSLMLNLGLAGMVEQAKRM 1055



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 147/351 (41%), Gaps = 73/351 (20%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L K +  ++A   F+VM   G+ P++  Y  L+    ++G +++A   ++ M+SV   +
Sbjct: 376 VLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVG-VQ 434

Query: 63  PDVYTYSILI----KSCTKFHRFDLIEKI------------------LAEMSYL------ 94
           P  YTY   I    KS       +  EK+                  LAEM  L      
Sbjct: 435 PTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTM 494

Query: 95  -------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
                  G+   +VTYN ++  Y K  + +E  +  S M+ +G C PD+  +NS+I +  
Sbjct: 495 FNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG-CEPDVIVVNSLIDSLY 553

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            +G ++  E W                           M+D+M+ +          PTVV
Sbjct: 554 KAGRVD--EAW--------------------------QMFDRMKDMK-------LSPTVV 578

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TYN ++   GK G ++K  E F+ M  +   PN+I++ +L+  + K   +     +  ++
Sbjct: 579 TYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKM 638

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
              D   D   +N +I    +   V      F  +K +   PD++T  T++
Sbjct: 639 TVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMHPDHVTICTLL 688



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 2/178 (1%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K  + E+A  LFE M   G KP+  ++  L++ YG+ G  + A      M +    +P
Sbjct: 903  LAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVN-EGIRP 961

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            D+ +Y+IL+       R D       E+   G++   + YN II+G GK+++ EE  + +
Sbjct: 962  DLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALY 1021

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            + M  + G  PD++T NS++   G +G +E+ ++ Y E  L G++ D+ T N L + Y
Sbjct: 1022 NEM-RNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGY 1078



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 124/276 (44%), Gaps = 1/276 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           + D+ TY  + K+ +       +  +L +M   G   +A +YN +I    ++    E   
Sbjct: 154 RRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALE 213

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +  MV S G  P + T ++++ A G   + E +     E   +G++ ++ T  I  +  
Sbjct: 214 VYRRMV-SEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVL 272

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           GRAG  D+   +   M      P +VTY ++I+    AG +E  +E F KMK  G KP+ 
Sbjct: 273 GRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQ 332

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           + Y +L+  ++  G +        Q+E    + D   F  ++    +A D ++    F  
Sbjct: 333 VIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDV 392

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M+++  +P+  T+ T+I      G  E A  L + M
Sbjct: 393 MRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTM 428



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 120/280 (42%), Gaps = 7/280 (2%)

Query: 61   CKPDVYT---YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            C+ D +      +L K   + + + + +K   +   LGI  +  +YN +I    +    E
Sbjct: 749  CREDSFLIPLVRVLCKHKRELYAYQIFDKFTKK---LGISPTLASYNCLIGELLEVHYTE 805

Query: 118  EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
            +    F  M ++ GC PD FT N +++ +G SG I ++ + Y E      K D  T NI+
Sbjct: 806  KAWDLFKDM-KNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 178  TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              S  ++   DK       +    F PT  TY  +I+   K G +E+    F++M   G 
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGC 924

Query: 238  KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            KPN   +  L++ Y K G       + +++ N  +  D   +  ++     AG V++   
Sbjct: 925  KPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALY 984

Query: 298  LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             F  +K     PD I +  +I         E A  L N+M
Sbjct: 985  YFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM 1024



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 113/262 (43%), Gaps = 38/262 (14%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +  +  +A  +F  +  +GL P    Y  ++  Y + G +DEA + +++M   + C+P
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIR-NGCEP 540

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV   + LI S  K  R D   ++   M  + +  + VTYNT++ G GK  + ++    F
Sbjct: 541 DVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELF 600

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            +M+    C P+  + N+++  +  +  +E   K +++  +M  K               
Sbjct: 601 ESMIXKK-CSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCK--------------- 644

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
                               P V+TYN VI    K   +     +F ++K + M P+ +T
Sbjct: 645 --------------------PDVLTYNTVIYGLIKENKVNHAFWFFHQLK-KSMHPDHVT 683

Query: 244 YCSLVSAYSKAGLIMKVDSILR 265
            C+L+    K G I    SI R
Sbjct: 684 ICTLLPGLVKCGQIGDAISIAR 705



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 3/209 (1%)

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T N M+        +E M   +       ++ D+ T   + K+    G   +M +V++ M
Sbjct: 124 TCNFMLEFLRVHDKVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKM 183

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +K  F     +YN +I    ++G   +  E +++M   G+KP+  TY +L+ A  K    
Sbjct: 184 RKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDS 243

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
             V  +L+++E+  +  +   F   I   G+AG +++  E+F  M +  C PD +T+  +
Sbjct: 244 EMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVL 303

Query: 318 IQAYNALGMTEAAQNLENKMIAMKENSGK 346
           I A    G  E A+ L    + MK N  K
Sbjct: 304 IDALCNAGQLENAKEL---FVKMKANGHK 329



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 1/225 (0%)

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           K E+M + F  M +      D+ T  ++  A    G + +M    N+    G   +  + 
Sbjct: 137 KVEDMAAVFEFM-QKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSY 195

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N L     ++G   +   V   M      P++ TY+ ++   GK    E +    K+M+ 
Sbjct: 196 NGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMED 255

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G++PN  T+   +    +AG I +   I R++++     D   +  +I A   AG +E 
Sbjct: 256 LGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLEN 315

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             ELF+ MK     PD + + T++  +N  G  +  +   ++M A
Sbjct: 316 AKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEA 360



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            M+ LG     EQA  ++E +   GL+P V  Y AL+  Y  S   + A++   +M  V  
Sbjct: 1040 MLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNM-MVDG 1098

Query: 61   CKPDVYTYSIL 71
            C P++ TY+ L
Sbjct: 1099 CNPNIGTYAQL 1109


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 159/328 (48%), Gaps = 3/328 (0%)

Query: 5   GKCKQPEQASLLFEVML-SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           G  ++PE++  L E+M  +  LKP+   Y  LV A  +   + EA++ ++ M + S  +P
Sbjct: 173 GIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLA-SGVQP 231

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TY+ L ++  +    +  E I+ +M    +  +  T   I+ GY +     E     
Sbjct: 232 DVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVV 291

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M + G  HP++   NS+I  + + G+ + ++K        GVK D+ T + +   +  
Sbjct: 292 YRMRDLG-IHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSS 350

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  DK + + D M K    P +  ++I+ + F +AG   K E     M   G++PN + 
Sbjct: 351 AGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVI 410

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +++S +  AG + K   +   + + DV  +   F  +I  YG+A    +  E+   M+
Sbjct: 411 FTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMME 470

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQ 331
           E + VP+N T   + +A+ ++GM   A+
Sbjct: 471 EMNVVPENSTLKLVSEAWRSIGMVNDAK 498



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 155/342 (45%), Gaps = 4/342 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F+ M   G KP+   +  L+  YG     +E+   +  M   ++ KP+  TY+I
Sbjct: 144 KEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNI 203

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  K         ++ +M   G++   VTYNT+   Y +  +  + ES    M+   
Sbjct: 204 LVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKK 263

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
             +P+  T   ++  Y   GN+ +  +       +G+  ++   N L K +   G  D +
Sbjct: 264 -VNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGV 322

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              +  M++    P V+T++ ++  +  AG ++K +E F  M   G++P+   +  L   
Sbjct: 323 DKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKG 382

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + +AG  +K +S+L  +    V  +   F  IIS +  AG +EK  ++F  M +    P+
Sbjct: 383 FVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPN 442

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMK---ENSGKKLI 349
             TF T+I  Y        A+ +   M  M    ENS  KL+
Sbjct: 443 LKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTLKLV 484



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 154/329 (46%), Gaps = 1/329 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P++A  +F  ++  G +P+   YTALV+A  +          +++M+  +  KPD    
Sbjct: 72  KPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEE-TGIKPDSILL 130

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I + ++        +I  +M   G + +  T+NT+I GYG  +K EE       M  
Sbjct: 131 NAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTR 190

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           +    P+  T N ++ A     +I++     ++    GV+ D+ T N L ++Y + G  +
Sbjct: 191 TTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETN 250

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K  S++  M  +   P   T  I++  + + G++ +      +M+  G+ PN + + SL+
Sbjct: 251 KAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLI 310

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             +   G    VD  L  +E S V  D   F+ I++ +  AG ++K  E+F  M +    
Sbjct: 311 KGFLDIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIE 370

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKM 337
           PD   F+ + + +   G    A++L N M
Sbjct: 371 PDIHVFSILAKGFVRAGEPVKAESLLNFM 399



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 68/124 (54%), Gaps = 4/124 (3%)

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           NI++E     G  ++ +  F  +  +G +P ++TY +LV+A ++      +  +L ++E 
Sbjct: 65  NILVE----RGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEE 120

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
           + +  D+   N II+A+ ++G+V++  E+F  M+E  C P   TF T+I+ Y  +   E 
Sbjct: 121 TGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEE 180

Query: 330 AQNL 333
           +  L
Sbjct: 181 SMKL 184



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 90/193 (46%), Gaps = 7/193 (3%)

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
           +N     G +    T   L  +  R   +  +  ++  M++    P  +  N +I  F +
Sbjct: 80  FNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSE 139

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE----NSDVIL 274
           +G++++  E F+KM+  G KP + T+ +L+  Y   G+I K +  ++ +E     +++  
Sbjct: 140 SGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGY---GIIRKPEESMKLLELMTRTTNLKP 196

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           +   +N ++ A  +   +++   +   M      PD +T+ T+ +AY   G T  A+++ 
Sbjct: 197 NNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESII 256

Query: 335 NKMIAMKENSGKK 347
             M+  K N  ++
Sbjct: 257 VDMLNKKVNPNER 269


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 157/327 (48%), Gaps = 5/327 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L + ML  G +PSV  YT L+ A  +S    +A   +++M++   C P++ TY+++
Sbjct: 163 EALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRA-KGCTPNIVTYNVI 221

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    +  R D   + L  +S  G +   V+Y T++ G   AK++E++E  F+ M+E   
Sbjct: 222 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN- 280

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  T + ++  +   G +E+  +   + +  G  A+    NI+  +  + G  D   
Sbjct: 281 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 340

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
             ++ M      P  ++Y  V++   +A   E  +E  K+M  +   PN +T+ + +   
Sbjct: 341 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL 400

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + GLI +   ++ Q+      ++   +N +++ +   G V+   ELF +M    C P+ 
Sbjct: 401 CQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNT 457

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           IT+ T++         +AA  L  +M+
Sbjct: 458 ITYTTLLTGLCNAERLDAAAELLAEML 484



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 138/327 (42%), Gaps = 5/327 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+ L +   S G  P V + T L+    + G   +A   +   +  S    DV+ Y+ L
Sbjct: 61  EAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER-SGTAVDVFAYNTL 119

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    ++ + D   +++A M    +   A TY  II G     +  E  S    M+  G 
Sbjct: 120 VAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG- 175

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P + T   ++ A   S    +  +  +E    G   +I T N++     R G  D  R
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
             ++ +    F P  V+Y  V++    A   E +EE F +M  +   PN +T+  LV  +
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 295

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + G++ +   +L Q+       +T   N +I+   + G V+   +    M    C PD 
Sbjct: 296 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDT 355

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           I++ T+++        E A+ L  +M+
Sbjct: 356 ISYTTVLKGLCRAERWEDAKELLKEMV 382



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 136/309 (44%), Gaps = 2/309 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           + P    YT ++      G + EA S ++DM     C+P V TY++L+++  K   F   
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLH-RGCQPSVVTYTVLLEAVCKSTGFGQA 199

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            ++L EM   G   + VTYN II+G  +  + ++    F   + S G  PD  +  +++ 
Sbjct: 200 MEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE-FLNRLSSYGFQPDTVSYTTVLK 258

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               +   E +E+ + E        +  T ++L + + R GM ++   V++ M       
Sbjct: 259 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAA 318

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
                NIVI T  K G ++   ++   M   G  P++I+Y +++    +A        +L
Sbjct: 319 NTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELL 378

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           +++   +   +   FN  I    Q G +E+   L   M E  C  + +T+  ++  +   
Sbjct: 379 KEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQ 438

Query: 325 GMTEAAQNL 333
           G  ++A  L
Sbjct: 439 GRVDSALEL 447



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 138/313 (44%), Gaps = 9/313 (2%)

Query: 28  SVDV--YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +VDV  Y  LV+ Y + G LD A   I  M       PD YTY+ +I+      R     
Sbjct: 110 AVDVFAYNTLVAGYCRYGQLDAARRLIASMPVA----PDAYTYTPIIRGLCDRGRVGEAL 165

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +L +M + G + S VTY  +++   K+  F +       M  + GC P+I T N +I+ 
Sbjct: 166 SLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEM-RAKGCTPNIVTYNVIING 224

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
               G ++   ++ N  +  G + D  +   + K    A  ++ +  +   M ++   P 
Sbjct: 225 MCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPN 284

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV-SAYSKAGLIMKVDSIL 264
            VT+++++  F + G +E+  +  ++M   G   N+ T C++V +   K G +      L
Sbjct: 285 EVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANT-TLCNIVINTICKQGRVDDAFQFL 343

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             + +     DT  +  ++    +A   E   EL   M  ++C P+ +TF T I      
Sbjct: 344 NNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQK 403

Query: 325 GMTEAAQNLENKM 337
           G+ E A  L  +M
Sbjct: 404 GLIEQATMLIEQM 416



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 115/263 (43%), Gaps = 5/263 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           EQA++L E M   G + ++  Y ALV+ +   G +D A      M     CKP+  TY+ 
Sbjct: 407 EQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP----CKPNTITYTT 462

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+       R D   ++LAEM       + VT+N ++  + +    +E       M+E G
Sbjct: 463 LLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P++ T N+++       N E+  +  +     GV  DI T + +     R    ++ 
Sbjct: 523 -CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEA 581

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   +Q     P  V YN ++    K  + +   ++F  M   G  PN +TY +L+  
Sbjct: 582 IKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEG 641

Query: 251 YSKAGLIMKVDSILRQVENSDVI 273
            +    + +   +LR++ +  V+
Sbjct: 642 LANEDFLKETRDLLRELCSRGVL 664



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/345 (19%), Positives = 150/345 (43%), Gaps = 40/345 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  + E M   G   +  +   +++   + G +D+AF  +N+M S   C PD  +Y+ 
Sbjct: 302 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYG-CSPDTISYTT 360

Query: 71  LIKSCTKFHRFD--------------------------------LIEK---ILAEMSYLG 95
           ++K   +  R++                                LIE+   ++ +MS  G
Sbjct: 361 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 420

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
            E + VTYN +++G+    + +     F +M     C P+  T  ++++   N+  ++  
Sbjct: 421 CEVNIVTYNALVNGFCVQGRVDSALELFYSM----PCKPNTITYTTLLTGLCNAERLDAA 476

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            +   E        ++ T N+L   + + G+ D+   +++ M +    P ++TYN +++ 
Sbjct: 477 AELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDG 536

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K  + E+  E    +   G+ P+ +TY S++   S+   + +   +   V++  +   
Sbjct: 537 ITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPK 596

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
              +N I+ A  +  + +   + F  M    C+P+ +T+ T+I+ 
Sbjct: 597 AVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEG 641


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 167/379 (44%), Gaps = 52/379 (13%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-VSDC- 61
            L K  Q EQA  + E M+  G  P V  Y  L+ +  ++G L+EA     DM S VS C 
Sbjct: 717  LWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCC 776

Query: 62   KPDVYTYSILIKSCTKFHRFDLIEKILAEM---------------SYLGIEC-------- 98
             P+V TYS+LI    K  R D   +++ EM               S+L   C        
Sbjct: 777  VPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEA 836

Query: 99   ----------------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
                              VT++T+IDG  K  + +E  + F  M+ +GG  P++ T N +
Sbjct: 837  CELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMI-AGGYVPNVVTYNVL 895

Query: 143  ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
            ++    +  +E+           GV  D+ T ++L  ++ +A   D+   ++  M  R  
Sbjct: 896  MNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGC 955

Query: 203  FPTVVTYNIVIETFGKAGHIEKMEEYFKKM--KHRGMKPNSITYCSLVSAYSKAGLIMKV 260
             P VVT+N +I+   K+    +  + F  M  KH G+ P+ ITYC+L+    + G   + 
Sbjct: 956  TPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKH-GLAPDKITYCTLIDGLFRTGWAGQA 1014

Query: 261  DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            + +L  + + D    T  FNC I+   + GDV +       M E   VPD +TF  +I  
Sbjct: 1015 EVLLDAMPDPD----TYAFNCCINGLSKLGDVSRA---LHRMLELELVPDKVTFNILIAG 1067

Query: 321  YNALGMTEAAQNLENKMIA 339
                G  E A  L  +M+A
Sbjct: 1068 ACKAGNFEQASALFEEMVA 1086



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 160/337 (47%), Gaps = 7/337 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E+A  + E M+  G+ P V  Y+ LV A+ ++  +DEA   ++ M S   C P
Sbjct: 405 LCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMAS-RGCTP 463

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSY-LGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           +V T++ +I    K  R     ++  +M+   G+    +TY T+IDG  +  +  + E+ 
Sbjct: 464 NVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEAL 523

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             AM +     PD +  N  I+     G++ +  + YN    + +  D  T NIL     
Sbjct: 524 LDAMPD-----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGAC 578

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG +++  ++ + M  +   P V+T+  +I+   KAG +E   +    M + G+ PN +
Sbjct: 579 KAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVV 638

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +LV    K+G I +    L ++ +S  + D+  +  ++ A  +A   +   +L   +
Sbjct: 639 TYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSEL 698

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           K     PD +T+  ++      G TE A  +  +M+ 
Sbjct: 699 KSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVG 735



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 162/343 (47%), Gaps = 9/343 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K     +A  ++  ML   L P    +  L++   ++G  ++A +   +M +  + +P
Sbjct: 542 LSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVA-KNLQP 600

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T+  LI    K  + +    IL  M  LG+  + VTYN ++ G  K+ + EE     
Sbjct: 601 DVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFL 660

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV SG C PD  T  S++ A   +   +   +  +E    G   D  T NIL     +
Sbjct: 661 EEMVSSG-CVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWK 719

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK---PN 240
           +G  ++  +V++ M  +   P VVTYN +I++  KAG +E+       M  R  +   PN
Sbjct: 720 SGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPN 779

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQV--ENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            +TY  L++   K G I +   +++++  ++ DV+ +   +N  +    +   + +  EL
Sbjct: 780 VVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACEL 839

Query: 299 FLTMKER--HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             ++++      PD +TF+T+I      G T+ A N+ + MIA
Sbjct: 840 MRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIA 882



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 168/342 (49%), Gaps = 11/342 (3%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  Q E A  + ++M + G+ P+V  Y ALV    +SG ++EA   + +M S S C 
Sbjct: 611 GLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVS-SGCV 669

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  L+ +  +  R D   ++++E+   G +   VTYN ++DG  K+ + E+  + 
Sbjct: 670 PDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITV 729

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA---DIQTLNILTK 179
              MV  G  HPD+ T N++I +   +G++E+  + + + +    +    ++ T ++L  
Sbjct: 730 LEEMVGKGH-HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLIN 788

Query: 180 SYGRAGMYDKMRSVMDFMQKRF--FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              + G  D+ R ++  M ++     P ++TYN  ++   K   + +  E  + ++   +
Sbjct: 789 GLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSL 848

Query: 238 K--PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           +  P+++T+ +L+    K G   +  ++   +     + +   +N +++   +   +E+ 
Sbjct: 849 RVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERA 908

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +  +M ++   PD IT++ ++ A+      + A  L + M
Sbjct: 909 HAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGM 950



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 157/378 (41%), Gaps = 47/378 (12%)

Query: 5    GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            G CK  + E+A    E M+S G  P    Y +LV A  ++   D+A   ++++KS     
Sbjct: 646  GLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFG-WD 704

Query: 63   PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE---M 119
            PD  TY+IL+    K  + +    +L EM   G     VTYNT+ID   KA   EE   +
Sbjct: 705  PDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRL 764

Query: 120  ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW-----------------YNEF 162
                S+ V S  C P++ T + +I+     G I++  +                  YN F
Sbjct: 765  HGDMSSRV-SRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSF 823

Query: 163  ----------------------NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
                                    + V  D  T + L     + G  D+  +V D M   
Sbjct: 824  LDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAG 883

Query: 201  FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
             + P VVTYN+++    K   +E+     + M  +G+ P+ ITY  LV A+ KA  + + 
Sbjct: 884  GYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEA 943

Query: 261  DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVPDNITFATMIQ 319
              +L  + +     +   FN II    ++    +  ++F  M  +H   PD IT+ T+I 
Sbjct: 944  LELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLID 1003

Query: 320  AYNALGMTEAAQNLENKM 337
                 G    A+ L + M
Sbjct: 1004 GLFRTGWAGQAEVLLDAM 1021



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%)

Query: 5   GKCKQPEQAS--LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E  +   LFE ++  G  P V  Y  L+ +  ++G L+EA     DM S S C 
Sbjct: 225 GLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRS-CV 283

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGK----AKKF 116
           P+V TYS+LI    K  R D   +++ EM+    +   + +TYN+ +DG  K    A+  
Sbjct: 284 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 343

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           E M S     +      PD  T +++I      G I++    +++    G   ++ T N 
Sbjct: 344 ELMRSLRDGSLRV---SPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNA 400

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L     +A   ++  ++++ M  +   P V+TY+++++ F KA  +++  E    M  RG
Sbjct: 401 LVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRG 460

Query: 237 MKPNSITYCSLVSAYSKA-----GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
             PN +T+ S++    K+        M  D  L+     D I      + +    G+AG 
Sbjct: 461 CTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRT-GRAGQ 519

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            E    L   M +    PD   F   I   + LG    A  + N+M+ ++
Sbjct: 520 AEA---LLDAMPD----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELE 562



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 149/340 (43%), Gaps = 12/340 (3%)

Query: 5   GKCKQPE--QASLLFEVM-LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           G CK     +A  +F+ M L  GL P    Y  L+    ++G   +A + ++ M      
Sbjct: 474 GLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD---- 529

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PD Y ++  I   +K        ++   M  L +    VT+N +I G  KA  FE+  +
Sbjct: 530 -PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASA 588

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  MV +    PD+ T  ++I     +G +E      +    +GV  ++ T N L    
Sbjct: 589 LFEEMV-AKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGL 647

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            ++G  ++    ++ M      P  +TY  ++    +A   +   +   ++K  G  P++
Sbjct: 648 CKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDT 707

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  LV    K+G   +  ++L ++       D   +N +I +  +AGD+E+   L   
Sbjct: 708 VTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGD 767

Query: 302 MK---ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           M     R CVP+ +T++ +I     +G  + A+ L  +M+
Sbjct: 768 MSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMM 807



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 156/358 (43%), Gaps = 43/358 (12%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L K   P +A  LF   L    +P+   Y+ L+ A  ++G   +   T+   + +    
Sbjct: 120 LLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAG--GDVERTLGFFRRIRSSS 177

Query: 63  PDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
             V  Y+I+++S C        +E    EM+  G+  + VTYNTII+G  K+ +      
Sbjct: 178 RSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGME 237

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  +VE G  HPD+ T N++I +   +G++E+  + + + +      ++ T ++L    
Sbjct: 238 LFEELVERGH-HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGL 296

Query: 182 GRAGMYDKMRSVMDFMQKRF--FFPTVVTYN----------------------------- 210
            + G  D+ R ++  M ++     P ++TYN                             
Sbjct: 297 CKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV 356

Query: 211 --------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
                    +I+   K G I++    F  M   G  PN ITY +LV+   KA  + +  +
Sbjct: 357 SPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHA 416

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           ++  + +  V  D   ++ ++ A+ +A  V++  EL   M  R C P+ +TF ++I  
Sbjct: 417 MIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 474



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 146/345 (42%), Gaps = 10/345 (2%)

Query: 1   MVMLGKCKQPEQASLLFEV----MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           +V+   C+  E A  L E+    M  DG+ P++  Y  +++   +S  L        ++ 
Sbjct: 185 IVLQSLCRAGETARAL-EIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELV 243

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
                 PDV TY+ LI S  K    +   ++  +MS      + VTY+ +I+G  K  + 
Sbjct: 244 ERGH-HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRI 302

Query: 117 EEMESSFSAMV-ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN--LMGVKADIQT 173
           +E       M  +S    P+I T NS +          +  +         + V  D  T
Sbjct: 303 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 362

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            + L     + G  D+  SV D M    + P V+TYN ++    KA  +E+     + M 
Sbjct: 363 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV 422

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +G+ P+ ITY  LV A+ KA  + +   +L  + +     +   FN II    ++    
Sbjct: 423 DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSG 482

Query: 294 KMGELFLTMKERH-CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +  ++F  M  +H  VPD IT+ T+I      G    A+ L + M
Sbjct: 483 EAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAM 527



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 146/341 (42%), Gaps = 13/341 (3%)

Query: 5   GKCKQPEQASLLFEVM--LSDG---LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           G CKQ   A    E+M  L DG   + P    ++ L+    + G +DEA S  +DM +  
Sbjct: 332 GLCKQSMTAEAC-ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIA-G 389

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P+V TY+ L+    K  + +    ++  M   G+    +TY+ ++D + KA + +E 
Sbjct: 390 GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 449

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-MGVKADIQTLNILT 178
                 M  S GC P++ T NS+I     S    +  + +++  L  G+  D  T   L 
Sbjct: 450 LELLHGMA-SRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLI 508

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               R G   +  +++D M      P    +N  I    K G + +  + + +M    + 
Sbjct: 509 DGLFRTGRAGQAEALLDAMPD----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELV 564

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ +T+  L++   KAG   +  ++  ++   ++  D   F  +I    +AG VE   ++
Sbjct: 565 PDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDI 624

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              M      P+ +T+  ++      G  E A     +M++
Sbjct: 625 LDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVS 665



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 14/257 (5%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDC 61
            L KC Q ++A  +F+ M++ G  P+V  Y  L++   ++  ++ A + I  M  K V+  
Sbjct: 864  LCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVT-- 921

Query: 62   KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
             PDV TYS+L+ +  K    D   ++L  M+  G   + VT+N+IIDG  K+ +  E   
Sbjct: 922  -PDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQ 980

Query: 122  SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN-LMGVKADIQTLNILTKS 180
             F  M    G  PD  T  ++I     +G       W  +   L+    D  T       
Sbjct: 981  MFDDMTLKHGLAPDKITYCTLIDGLFRTG-------WAGQAEVLLDAMPDPDTYAFNCCI 1033

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             G + + D  R++   ++     P  VT+NI+I    KAG+ E+    F++M  + ++P+
Sbjct: 1034 NGLSKLGDVSRALHRMLELELV-PDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPD 1092

Query: 241  SITYCSLVSAYSKAGLI 257
             +T+ +L+    KAG +
Sbjct: 1093 VMTFGALIDGLCKAGQV 1109



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 103/207 (49%), Gaps = 10/207 (4%)

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           IF+ N  ++    SG+  K    +        + +  T + L ++  +AG  D  R++  
Sbjct: 111 IFSFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAG-GDVERTLGF 169

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK-KMKHRGMKPNSITYCSLVSAYSKA 254
           F + R    +V  YNIV+++  +AG   +  E F+ +M   G+ P  +TY ++++   K+
Sbjct: 170 FRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKS 229

Query: 255 ---GLIMKV-DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
              G  M++ + ++ +  + DV+     +N +I +  +AGD+E+   L   M  R CVP+
Sbjct: 230 NELGAGMELFEELVERGHHPDVVT----YNTLIDSLCKAGDLEEARRLHGDMSSRSCVPN 285

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            +T++ +I     +G  + A+ L  +M
Sbjct: 286 VVTYSVLINGLCKVGRIDEARELIQEM 312



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 31/224 (13%)

Query: 1    MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
            ++M G CK    E+A  + E M+  G+ P V  Y+ LV A+ ++  +DEA   ++ M S 
Sbjct: 894  VLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMAS- 952

Query: 59   SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY-LGIECSAVTYNTIIDGYGKAKKFE 117
              C P+V T++ +I    K  +     ++  +M+   G+    +TY T+IDG  +     
Sbjct: 953  RGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAG 1012

Query: 118  EMESSFSAMVE-------------------SGGCH--------PDIFTLNSMISAYGNSG 150
            + E    AM +                   S   H        PD  T N +I+    +G
Sbjct: 1013 QAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAG 1072

Query: 151  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
            N E+    + E     ++ D+ T   L     +AG  +    +M
Sbjct: 1073 NFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 154/327 (47%), Gaps = 9/327 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYS 69
            +A  +FE M   GL PS+  Y  ++  YG+ G   D+    +++M+S      D +T S
Sbjct: 239 HRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDEMRS-RGLDFDEFTCS 297

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            ++ +C +    D   +  + +   G +   VTYN ++  +GKA  F E  S  S M E 
Sbjct: 298 TVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEM-EE 356

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
             C PD  T N +++AY  +G  E+     +     G+  +  T   +  +YGR G  DK
Sbjct: 357 NNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDK 416

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              + D M +    P V TYN V+   GK    E+M +    MK  G  PN IT+ ++++
Sbjct: 417 ALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLA 476

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG---DVEKMGELFLTMKERH 306
              K G+   V+ + R+++N     D   FN +ISAYG+ G   D  KM E  +      
Sbjct: 477 MCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSP 536

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNL 333
           C+    T+  ++ A    G  +AA+++
Sbjct: 537 CIN---TYNALLNALARRGDWKAAESV 560



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 157/337 (46%), Gaps = 3/337 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+  Q   AS LF+V+  D     V  YT ++ AY ++G    A      M   S   
Sbjct: 196 ILGRESQHTVASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNE-SGLS 254

Query: 63  PDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY++++    K  R +D I ++L EM   G++    T +T++   G+    +E   
Sbjct: 255 PSLVTYNVMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEARE 314

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            FS + +S G  P   T N+++  +G +G   +     +E        D  T N +  +Y
Sbjct: 315 FFSGL-KSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAY 373

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            RAG +++   V+D M  +   P  VTY  +I  +G+ G I+K  E F +M   G  PN 
Sbjct: 374 VRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNV 433

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY +++    K  L  ++  IL  ++ +    +   +N +++  G+ G  + + ++F  
Sbjct: 434 ATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFRE 493

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           MK     PD  TF T+I AY   G    A  +  +MI
Sbjct: 494 MKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMI 530



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 160/359 (44%), Gaps = 39/359 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A   F  + S+G KP    Y AL+  +G++G+  EA S +++M+  ++C PD  TY+ 
Sbjct: 310 DEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEE-NNCPPDAVTYNE 368

Query: 71  LIKSCTK--FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           ++ +  +  FH    +  ++  M+  GI  +AVTY TII+ YG+    ++    F  M+E
Sbjct: 369 VVAAYVRAGFHEEGAV--VIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMME 426

Query: 129 SG----------------------------------GCHPDIFTLNSMISAYGNSGNIEK 154
            G                                  GC P+  T N+M++  G  G  + 
Sbjct: 427 LGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKY 486

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
           + + + E    G + D  T N L  +YGR G  +    + + M K  F P + TYN ++ 
Sbjct: 487 VNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLN 546

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
              + G  +  E     M+++G +P+  +Y  +V +Y+K G +  ++ I + + + D+  
Sbjct: 547 ALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFP 606

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                  ++ A  +   +  M   F  +++    PD +   +M+  +    M + A  +
Sbjct: 607 SWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEM 665



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 170/365 (46%), Gaps = 37/365 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+ +++ + M S G+ P+   YT +++AYG+ G +D+A    + M  +  C P+V TY+ 
Sbjct: 380 EEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELG-CVPNVATYNA 438

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K    + + KIL  M   G   + +T+NT++   GK    + +   F  M ++ 
Sbjct: 439 VLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREM-KNC 497

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD  T N++ISAYG  G+     K + E    G    I T N L  +  R G +   
Sbjct: 498 GFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAA 557

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGH------IEK-------------------- 224
            SV+  M+ + F P+  +Y++++ ++ K G+      IEK                    
Sbjct: 558 ESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLA 617

Query: 225 ---------MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                    ME  F+ ++  G KP+ +   S++S ++K  +  +   +LR + ++ +  D
Sbjct: 618 NFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPD 677

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
               N ++  Y + GD  K  E+   ++     PD +++ T+I+ +   G+ +    + +
Sbjct: 678 LVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILS 737

Query: 336 KMIAM 340
           +M ++
Sbjct: 738 EMTSI 742



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 146/324 (45%), Gaps = 8/324 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + M GK    +  + +F  M + G +P  D +  L+SAYG+ G  ++A     +M     
Sbjct: 475 LAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAG- 533

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFE 117
             P + TY+ L+ +  +   +   E ++ +M   G   S  +Y+ ++  Y   G  K  E
Sbjct: 534 FSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIE 593

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
            +E S    +  G   P    L +++ A     ++  ME+ +      G K D+   N +
Sbjct: 594 MIEKS----IYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSM 649

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              + +  MYD+   ++  +      P +VT+N +++ + + G   K EE  + ++  G 
Sbjct: 650 LSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGG 709

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           KP+ ++Y +++  + + GL+ +   IL ++ +  V      +N  IS Y   G   ++ +
Sbjct: 710 KPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEIND 769

Query: 298 LFLTMKERHCVPDNITFATMIQAY 321
           +   M   +C P+ +T+  +   Y
Sbjct: 770 VISYMIVHNCRPNELTYKIVADGY 793



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM-YDKMRSV 193
           D+    +++ AY  +G   +  + +   N  G+   + T N++   YG+ G  +DK+  +
Sbjct: 221 DVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILEL 280

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           +D M+ R       T + V+   G+ G I++  E+F  +K  G KP ++TY +L+  + K
Sbjct: 281 LDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGK 340

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           AG+  +  S+L ++E ++   D   +N +++AY +AG  E+   +   M  +  +P+ +T
Sbjct: 341 AGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVT 400

Query: 314 FATMIQAYNALGMTEAAQNLENKMIAM 340
           + T+I AY  +G  + A  + ++M+ +
Sbjct: 401 YTTIINAYGRVGDIDKALEMFDQMMEL 427



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 35/284 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C     A+ + E M+  G  P ++ Y AL++A  + G    A S I DM++    +P 
Sbjct: 514 GRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRN-KGFRPS 572

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +YS+++ S  K      IE I   +    I  S +   T++    K +    ME +F 
Sbjct: 573 ETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQ 632

Query: 125 AMVESG----------------------------------GCHPDIFTLNSMISAYGNSG 150
           A+ + G                                  G  PD+ T NS++  Y   G
Sbjct: 633 ALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLMDMYARGG 692

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           +  K E+        G K D+ + N + K + R G+  +   ++  M      P + TYN
Sbjct: 693 DCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCIFTYN 752

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             I  +   G   ++ +    M     +PN +TY  +   Y KA
Sbjct: 753 TFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGYCKA 796


>gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Cucumis sativus]
          Length = 528

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 148/298 (49%), Gaps = 11/298 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           VY+ L+S  G+ G +  A    ++M++ S C+PD   Y+ LI +    H  D  + ++  
Sbjct: 129 VYSKLISIMGKKGQIRMAMWLFSEMRN-SGCRPDTSVYNALITA--HLHSKDKAKALVKV 185

Query: 91  MSYL----GIE-CSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           +SY     G+E C    VTYN +   + +A K +++ + F  + ES     DI+T N ++
Sbjct: 186 LSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESV-VSADIYTYNGVM 244

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AYG +GNI++ME          +K DI + N+L  SYG+  ++DKM  V   + +    
Sbjct: 245 DAYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKER 304

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT+ T+N +I  +GKA   EK EE F+KMK  G  P+ +T  SL+  Y     + K   I
Sbjct: 305 PTLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREI 364

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
              + NS   +     N ++  Y   G   +   LF +       PD+ T+  + +AY
Sbjct: 365 FDGMVNSGKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYKAY 422



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 153/333 (45%), Gaps = 11/333 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G +P   VY AL++A+     ++  L +  S    MK +
Sbjct: 136 IMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYFEKMKGM 195

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             CKP++ TY+IL ++  +  + D +  +  ++    +     TYN ++D YGK    +E
Sbjct: 196 ERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGKNGNIKE 255

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           ME   + M +S    PDI + N +I +YG     +KME+ +        +  + T N + 
Sbjct: 256 MELMLARM-KSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMI 314

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A + +K   V   M+   + P+ VT   +I  +G    + K  E F  M + G +
Sbjct: 315 TNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSGKE 374

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
               T  +++  Y   GL ++ D +     N  V  D+  +  +  AY +A   E + +L
Sbjct: 375 VRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKADKKELLEKL 434

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
              M +   +P+   F       +ALG   ++Q
Sbjct: 435 LKNMDKAGIIPNKRFF------LDALGTIGSSQ 461



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 150/314 (47%), Gaps = 27/314 (8%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV------------- 101
           +++ SD +P + T    ++     H F L E++     +L  EC  V             
Sbjct: 69  IRNFSDKEPLLKTLDKYVRVMRTEHCFLLFEELGKRDKWL--ECLEVFRWMQKQRWYIAD 126

Query: 102 --TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKW 158
              Y+ +I   GK  +       FS M  SG C PD    N++I+A+ +S +  K + K 
Sbjct: 127 NGVYSKLISIMGKKGQIRMAMWLFSEMRNSG-CRPDTSVYNALITAHLHSKDKAKALVKV 185

Query: 159 YNEFNLMG----VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
            + F  M      K +I T NILT+++ +A   D++ ++   + +      + TYN V++
Sbjct: 186 LSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMD 245

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +GK G+I++ME    +MK   +KP+ I++  L+ +Y K  L  K++ + + +  S    
Sbjct: 246 AYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERP 305

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
             P FN +I+ YG+A   EK  E+F  MK+    P  +T  ++I  Y        A+ + 
Sbjct: 306 TLPTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIF 365

Query: 335 NKMIAMKENSGKKL 348
           + M+    NSGK++
Sbjct: 366 DGMV----NSGKEV 375


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 157/327 (48%), Gaps = 5/327 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L + ML  G +PSV  YT L+ A  +S    +A   +++M++   C P++ TY+++
Sbjct: 194 EALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRA-KGCTPNIVTYNVI 252

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    +  R D   + L  +S  G +   V+Y T++ G   AK++E++E  F+ M+E   
Sbjct: 253 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN- 311

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  T + ++  +   G +E+  +   + +  G  A+    NI+  +  + G  D   
Sbjct: 312 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 371

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
             ++ M      P  ++Y  V++   +A   E  +E  K+M  +   PN +T+ + +   
Sbjct: 372 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL 431

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + GLI +   ++ Q+      ++   +N +++ +   G V+   ELF +M    C P+ 
Sbjct: 432 CQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNT 488

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           IT+ T++         +AA  L  +M+
Sbjct: 489 ITYTTLLTGLCNAERLDAAAELLAEML 515



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 138/327 (42%), Gaps = 5/327 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+ L +   S G  P V + T L+    + G   +A   +   +  S    DV+ Y+ L
Sbjct: 92  RAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER-SGTAVDVFAYNTL 150

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    ++ + D   +++A M    +   A TY  II G     +  E  S    M+  G 
Sbjct: 151 VAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG- 206

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P + T   ++ A   S    +  +  +E    G   +I T N++     R G  D  R
Sbjct: 207 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 266

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
             ++ +    F P  V+Y  V++    A   E +EE F +M  +   PN +T+  LV  +
Sbjct: 267 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 326

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + G++ +   +L Q+       +T   N +I+   + G V+   +    M    C PD 
Sbjct: 327 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDT 386

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           I++ T+++        E A+ L  +M+
Sbjct: 387 ISYTTVLKGLCRAERWEDAKELLKEMV 413



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 136/309 (44%), Gaps = 2/309 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           + P    YT ++      G + EA S ++DM     C+P V TY++L+++  K   F   
Sbjct: 172 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLH-RGCQPSVVTYTVLLEAVCKSTGFGQA 230

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            ++L EM   G   + VTYN II+G  +  + ++    F   + S G  PD  +  +++ 
Sbjct: 231 MEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE-FLNRLSSYGFQPDTVSYTTVLK 289

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               +   E +E+ + E        +  T ++L + + R GM ++   V++ M       
Sbjct: 290 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAA 349

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
                NIVI T  K G ++   ++   M   G  P++I+Y +++    +A        +L
Sbjct: 350 NTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELL 409

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           +++   +   +   FN  I    Q G +E+   L   M E  C  + +T+  ++  +   
Sbjct: 410 KEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQ 469

Query: 325 GMTEAAQNL 333
           G  ++A  L
Sbjct: 470 GRVDSALEL 478



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 138/313 (44%), Gaps = 9/313 (2%)

Query: 28  SVDV--YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +VDV  Y  LV+ Y + G LD A   I  M       PD YTY+ +I+      R     
Sbjct: 141 AVDVFAYNTLVAGYCRYGQLDAARRLIASMPVA----PDAYTYTPIIRGLCDRGRVGEAL 196

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +L +M + G + S VTY  +++   K+  F +       M  + GC P+I T N +I+ 
Sbjct: 197 SLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEM-RAKGCTPNIVTYNVIING 255

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
               G ++   ++ N  +  G + D  +   + K    A  ++ +  +   M ++   P 
Sbjct: 256 MCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPN 315

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV-SAYSKAGLIMKVDSIL 264
            VT+++++  F + G +E+  +  ++M   G   N+ T C++V +   K G +      L
Sbjct: 316 EVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANT-TLCNIVINTICKQGRVDDAFQFL 374

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             + +     DT  +  ++    +A   E   EL   M  ++C P+ +TF T I      
Sbjct: 375 NNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQK 434

Query: 325 GMTEAAQNLENKM 337
           G+ E A  L  +M
Sbjct: 435 GLIEQATMLIEQM 447



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 115/263 (43%), Gaps = 5/263 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           EQA++L E M   G + ++  Y ALV+ +   G +D A      M     CKP+  TY+ 
Sbjct: 438 EQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP----CKPNTITYTT 493

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+       R D   ++LAEM       + VT+N ++  + +    +E       M+E G
Sbjct: 494 LLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 553

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P++ T N+++       N E+  +  +     GV  DI T + +     R    ++ 
Sbjct: 554 -CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEA 612

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   +Q     P  V YN ++    K  + +   ++F  M   G  PN +TY +L+  
Sbjct: 613 IKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEG 672

Query: 251 YSKAGLIMKVDSILRQVENSDVI 273
            +    + +   +LR++ +  V+
Sbjct: 673 LANEDFLKETRDLLRELCSRGVL 695



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/345 (19%), Positives = 150/345 (43%), Gaps = 40/345 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  + E M   G   +  +   +++   + G +D+AF  +N+M S   C PD  +Y+ 
Sbjct: 333 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYG-CSPDTISYTT 391

Query: 71  LIKSCTKFHRFD--------------------------------LIEK---ILAEMSYLG 95
           ++K   +  R++                                LIE+   ++ +MS  G
Sbjct: 392 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 451

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
            E + VTYN +++G+    + +     F +M     C P+  T  ++++   N+  ++  
Sbjct: 452 CEVNIVTYNALVNGFCVQGRVDSALELFYSM----PCKPNTITYTTLLTGLCNAERLDAA 507

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            +   E        ++ T N+L   + + G+ D+   +++ M +    P ++TYN +++ 
Sbjct: 508 AELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDG 567

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K  + E+  E    +   G+ P+ +TY S++   S+   + +   +   V++  +   
Sbjct: 568 ITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPK 627

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
              +N I+ A  +  + +   + F  M    C+P+ +T+ T+I+ 
Sbjct: 628 AVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEG 672


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 156/352 (44%), Gaps = 5/352 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +  + E+A  LF  +   G+ P++  Y  ++  YG+ G        + +    +  +P
Sbjct: 190 LSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEP 249

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +T S +I +C +    D       ++   G     VTYN ++  +GKA  + E     
Sbjct: 250 DDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVL 309

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E  GC PD  T N +   Y  +G  E+  K  +     G+  +  T N +  +Y  
Sbjct: 310 KEM-EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYAN 368

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+  ++ D M+K  + P V TYN++    GK      M E  ++M   G  PN +T
Sbjct: 369 VGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVT 428

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + ++++   K G+   V  +L  +++  V L    +N +ISAYG+ G      +++  M 
Sbjct: 429 WNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMI 488

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI--AMKEN--SGKKLIQC 351
                P   T+  ++   +  G    AQ++ +KM+    K N  S   L+QC
Sbjct: 489 SSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQC 540



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 147/303 (48%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           +V A G+ G  D     +++M      + DV  Y+ ++ + ++  R++   ++ AE+   
Sbjct: 150 VVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQ 209

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G+  + VTYN ++D YG+  +      +    + + G  PD FT +++I+A G  G +++
Sbjct: 210 GVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQ 269

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
              ++ +    G    + T N L + +G+AG Y +   V+  M+     P  VTYN +  
Sbjct: 270 AVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 329

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
           T+ +AG  E+  +    M  +G+ PN+ TY ++++AY+  G + +  ++  +++ +  + 
Sbjct: 330 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVP 389

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           +   +N I    G+      M E+   M    C P+ +T+ TM+      GM +    + 
Sbjct: 390 NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 449

Query: 335 NKM 337
           N M
Sbjct: 450 NGM 452



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 172/364 (47%), Gaps = 37/364 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A+   + M S GL P+   Y  +++AY   G +DEA +  + MK  +   P+V TY++
Sbjct: 338 EEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKK-NGYVPNVNTYNL 396

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +     K  RF  + ++L EMS  G   + VT+NT++   GK +  E+  +     ++S 
Sbjct: 397 IFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGK-RGMEDYVTRVLNGMKSC 455

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G      T N++ISAYG  G+     K Y+E    G    + T N L     R G +   
Sbjct: 456 GVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTA 515

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----------------------------- 221
           +S++  M K  F P   +Y+++++ + K G+                             
Sbjct: 516 QSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIA 575

Query: 222 ------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                 +E +E+ F+++K +G KP+ + + S+++ Y+K GL  K   +   ++ S +  D
Sbjct: 576 NFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPD 635

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N ++  Y ++ +  +  ++   +K     PD +++ T+I  +   G+ + AQ + +
Sbjct: 636 LITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILS 695

Query: 336 KMIA 339
           +MIA
Sbjct: 696 EMIA 699



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 150/357 (42%), Gaps = 35/357 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA   FE + + G  P V  Y AL+  +G++G   EA   + +M+  S C+PD  TY+ 
Sbjct: 268 DQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED-SGCQPDAVTYNE 326

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM----------- 119
           L  +  +   F+   K L  M+  G+  +  TYNT++  Y    + +E            
Sbjct: 327 LAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNG 386

Query: 120 -----------------ESSFSAMVE------SGGCHPDIFTLNSMISAYGNSGNIEKME 156
                            +S F+AM+E        GC P+  T N+M++  G  G  + + 
Sbjct: 387 YVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVT 446

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           +  N     GV+    T N L  +YGR G       + D M    F P + TYN ++   
Sbjct: 447 RVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVL 506

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            + G     +    KM   G KPN  +Y  L+  Y+K G    ++SI ++V    +    
Sbjct: 507 SRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSW 566

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                ++ A  +   +E + + F  +K +   PD + F +M+  Y   G+   A  +
Sbjct: 567 VILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 623



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 161/348 (46%), Gaps = 2/348 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + GK    +  + +   M S G++ S D Y  L+SAYG+ G    AF   ++M S S 
Sbjct: 433 LAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMIS-SG 491

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P + TY+ L+   ++   +   + I+++M   G + +  +Y+ ++  Y K      +E
Sbjct: 492 FTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIE 551

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            S    V  G   P    L +++ A      +E +EK + E    G K D+   N +   
Sbjct: 552 -SIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAM 610

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y + G+Y K   + D +++    P ++TYN +++ + K+    + E+  K++K   +KP+
Sbjct: 611 YAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPD 670

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ++Y ++++ + K GLI +   IL ++    +      ++ ++  Y       +  E+  
Sbjct: 671 VVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVN 730

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 348
            M   +  P  +T+  ++ +Y      + A+   +++    +N  +KL
Sbjct: 731 YMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKL 778


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 156/316 (49%), Gaps = 2/316 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K ++  +A  +F  M   G+ P +  Y +L+          EA + +N+M+S+ +  PD+
Sbjct: 250 KDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSL-NIMPDI 308

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            T+++L+ +  K  +    + +L  M+ +G+E   VTY++++ GY    +  E    F A
Sbjct: 309 VTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDA 368

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+ + GC PD+F+ N +I+ Y     I++ ++ +NE    G+  +  + N L     + G
Sbjct: 369 MI-TKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLG 427

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              + R++   M      P + TY+I+++ F K G+  K    F+ M+    KPN + Y 
Sbjct: 428 SLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYN 487

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+ A  K+G +     +  ++    +  +   +  II+   + G +++  E F  M+E 
Sbjct: 488 ILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEED 547

Query: 306 HCVPDNITFATMIQAY 321
            C PD I++  +I+ +
Sbjct: 548 GCPPDEISYNVIIRGF 563



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 152/330 (46%), Gaps = 40/330 (12%)

Query: 11  EQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           ++  L F V+   +  GL+P++  +T L++   + G   +A    +DM +   C+PDVYT
Sbjct: 147 QRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVA-RGCRPDVYT 205

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ +I    K         +L +M   G + + VTY+TIID + K ++  E    FS M 
Sbjct: 206 YTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYM- 264

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           +  G  PDIFT NS+I    N    ++     NE         +++LNI+          
Sbjct: 265 KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNE---------MRSLNIM---------- 305

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                           P +VT+N++++T  K G + + +   K M   G++P+ +TY SL
Sbjct: 306 ----------------PDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSL 349

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  YS    +++   +   +       D   +N +I+ Y +   +++  +LF  M  +  
Sbjct: 350 MYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGL 409

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKM 337
            P+N+++ T+I     LG    A+NL   M
Sbjct: 410 TPNNVSYNTLIHGLCQLGSLREARNLFKNM 439



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 154/336 (45%), Gaps = 8/336 (2%)

Query: 5   GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E A+   L + M   G +P+V  Y+ ++ ++ +   ++EA    + MK V    
Sbjct: 212 GLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMK-VKGIS 270

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD++TY+ LI+    F ++     +L EM  L I    VT+N ++D   K  K  E +  
Sbjct: 271 PDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGV 330

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E G   PD+ T +S++  Y     + +  K ++     G K D+ + NIL   Y 
Sbjct: 331 LKTMTEMG-VEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYC 389

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    D+ + + + M  +   P  V+YN +I    + G + +    FK M   G  PN  
Sbjct: 390 KVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLF 449

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+  + K G   K   + R ++++    +   +N +I A  ++G++    +LF  +
Sbjct: 450 TYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSEL 509

Query: 303 KERHCVPDNITFATMIQAYNALGM----TEAAQNLE 334
             +   P+   + T+I      G+     EA +N+E
Sbjct: 510 FVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNME 545



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 144/322 (44%), Gaps = 36/322 (11%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  ML     P +  +T L+SA  + G   +   ++     ++   P++YT SILI   +
Sbjct: 85  FNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFS 144

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
              R DL   +LA++  LG++ + VT+ T+I+   K  KF +    F  MV + GC PD+
Sbjct: 145 HLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMV-ARGCRPDV 203

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
           +T  ++I+     G                            ++   AG+  KM      
Sbjct: 204 YTYTTIINGLCKIG----------------------------ETAAAAGLLKKM------ 229

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
            ++    P VVTY+ +I++  K   + +  + F  MK +G+ P+  TY SL+        
Sbjct: 230 -EEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQ 288

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
             +  ++L ++ + +++ D   FN ++    + G V +   +  TM E    PD +T+++
Sbjct: 289 WKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSS 348

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           ++  Y+       A+ L + MI
Sbjct: 349 LMYGYSLRSEVVEARKLFDAMI 370



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 99/240 (41%)

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           + +  ++    K  ++ +   S +  +E  G  P+I+TL+ +I+ + +   ++       
Sbjct: 98  IQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLA 157

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           +   +G++  I T   L     + G + +   + D M  R   P V TY  +I    K G
Sbjct: 158 KIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIG 217

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
                    KKM+  G +PN +TY +++ ++ K   + +   I   ++   +  D   +N
Sbjct: 218 ETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYN 277

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +I         ++   L   M+  + +PD +TF  ++      G    AQ +   M  M
Sbjct: 278 SLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEM 337



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 2/163 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A  LF+ M ++G  P++  Y+ L+  + + G   +AF     M+S    KP++  Y+I
Sbjct: 430 REARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYS-KPNLVMYNI 488

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI +  K        K+ +E+   G++ +A  Y TII+G  K    +E   +F  M E  
Sbjct: 489 LIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNM-EED 547

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
           GC PD  + N +I  + +  +  +  +   E    G  AD+ T
Sbjct: 548 GCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 157/327 (48%), Gaps = 5/327 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L + ML  G +PSV  YT L+ A  +S    +A   +++M++   C P++ TY+++
Sbjct: 163 EALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRA-KGCTPNIVTYNVI 221

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    +  R D   + L  +S  G +   V+Y T++ G   AK++E++E  F+ M+E   
Sbjct: 222 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKN- 280

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  T + ++  +   G +E+  +   + +  G  A+    NI+  +  + G  D   
Sbjct: 281 CMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAF 340

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
             ++ M      P  ++Y  V++   +A   E  +E  K+M  +   PN +T+ + +   
Sbjct: 341 QFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICIL 400

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + GLI +   ++ Q+      ++   +N +++ +   G V+   ELF +M    C P+ 
Sbjct: 401 CQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP---CKPNT 457

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           IT+ T++         +AA  L  +M+
Sbjct: 458 ITYTTLLTGLCNAERLDAAAELLAEML 484



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 138/327 (42%), Gaps = 5/327 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+ L +   S G  P V + T L+    + G   +A   +   +  S    DV+ Y+ L
Sbjct: 61  EAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER-SGTAVDVFAYNTL 119

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    ++ + D   +++A M    +   A TY  II G     +  E  S    M+  G 
Sbjct: 120 VAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG- 175

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P + T   ++ A   S    +  +  +E    G   +I T N++     R G  D  R
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
             ++ +    F P  V+Y  V++    A   E +EE F +M  +   PN +T+  LV  +
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 295

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + G++ +   +L Q+       +T   N +I+   + G V+   +    M    C PD 
Sbjct: 296 CRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDT 355

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           I++ T+++        E A+ L  +M+
Sbjct: 356 ISYTTVLKGLCRAERWEDAKELLKEMV 382



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 136/309 (44%), Gaps = 2/309 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           + P    YT ++      G + EA S ++DM     C+P V TY++L+++  K   F   
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLH-RGCQPSVVTYTVLLEAVCKSTGFGQA 199

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            ++L EM   G   + VTYN II+G  +  + ++    F   + S G  PD  +  +++ 
Sbjct: 200 MEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE-FLNRLSSYGFQPDTVSYTTVLK 258

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               +   E +E+ + E        +  T ++L + + R GM ++   V++ M       
Sbjct: 259 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAA 318

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
                NIVI T  K G ++   ++   M   G  P++I+Y +++    +A        +L
Sbjct: 319 NTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELL 378

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           +++   +   +   FN  I    Q G +E+   L   M E  C  + +T+  ++  +   
Sbjct: 379 KEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQ 438

Query: 325 GMTEAAQNL 333
           G  ++A  L
Sbjct: 439 GRVDSALEL 447



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 138/313 (44%), Gaps = 9/313 (2%)

Query: 28  SVDV--YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +VDV  Y  LV+ Y + G LD A   I  M       PD YTY+ +I+      R     
Sbjct: 110 AVDVFAYNTLVAGYCRYGQLDAARRLIASMPVA----PDAYTYTPIIRGLCDRGRVGEAL 165

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +L +M + G + S VTY  +++   K+  F +       M  + GC P+I T N +I+ 
Sbjct: 166 SLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEM-RAKGCTPNIVTYNVIING 224

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
               G ++   ++ N  +  G + D  +   + K    A  ++ +  +   M ++   P 
Sbjct: 225 MCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPN 284

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV-SAYSKAGLIMKVDSIL 264
            VT+++++  F + G +E+  +  ++M   G   N+ T C++V +   K G +      L
Sbjct: 285 EVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANT-TLCNIVINTICKQGRVDDAFQFL 343

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             + +     DT  +  ++    +A   E   EL   M  ++C P+ +TF T I      
Sbjct: 344 NNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQK 403

Query: 325 GMTEAAQNLENKM 337
           G+ E A  L  +M
Sbjct: 404 GLIEQATMLIEQM 416



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 116/263 (44%), Gaps = 5/263 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           EQA++L E M   G + ++  Y ALV+ +   G +D A      M     CKP+  TY+ 
Sbjct: 407 EQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP----CKPNTITYTT 462

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+       R D   ++LAEM       + VT+N ++  + +    +E       M+E G
Sbjct: 463 LLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHG 522

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P++ T N+++    N  N E+  +  +     GV  DI T + +     R    ++ 
Sbjct: 523 -CTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEA 581

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   +Q     P  V YN ++    K  + +   ++F  M   G  PN +TY +L+  
Sbjct: 582 IKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEG 641

Query: 251 YSKAGLIMKVDSILRQVENSDVI 273
            +    + +   +LR++ +  V+
Sbjct: 642 LANEDFLKETRDLLRELCSRGVL 664



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/345 (19%), Positives = 149/345 (43%), Gaps = 40/345 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  + E M   G   +  +   +++   + G +D+AF  +N+M S   C PD  +Y+ 
Sbjct: 302 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYG-CSPDTISYTT 360

Query: 71  LIKSCTKFHRFD--------------------------------LIEK---ILAEMSYLG 95
           ++K   +  R++                                LIE+   ++ +MS  G
Sbjct: 361 VLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHG 420

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
            E + VTYN +++G+    + +     F +M     C P+  T  ++++   N+  ++  
Sbjct: 421 CEVNIVTYNALVNGFCVQGRVDSALELFYSM----PCKPNTITYTTLLTGLCNAERLDAA 476

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            +   E        ++ T N+L   + + G+ D+   +++ M +    P ++TYN +++ 
Sbjct: 477 AELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDG 536

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                + E+  E    +   G+ P+ +TY S++   S+   + +   +   V++  +   
Sbjct: 537 ITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPK 596

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
              +N I+ A  +  + +   + F  M    C+P+ +T+ T+I+ 
Sbjct: 597 AVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEG 641


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 160/340 (47%), Gaps = 6/340 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +++  C++    +A  +F  ML  G+ P +  +++L++ + ++  LD+A     DMK   
Sbjct: 229 LLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFG 288

Query: 60  DCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              PD   Y++L+   C   +  + + KI  EM   G     + YNTI++G  K K   +
Sbjct: 289 -LVPDNVIYTVLMHGYCRNGNMLEAL-KIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTD 346

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            +  F  MVE G   PD +T  ++I  +   GN+ K    +       +K DI   N L 
Sbjct: 347 ADKLFDEMVERGAL-PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLI 405

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + + G  +K   + D M  R  FP  +TY I+I  +   GH+ +    +  M  +G+K
Sbjct: 406 DGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIK 465

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P  +T  +++  Y ++G   K D  L ++    V  D   +N +I+ + +  +++K    
Sbjct: 466 PTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLW 525

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              M++   +PD IT+  ++  +   G  + A+ +  KMI
Sbjct: 526 INKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMI 565



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 157/325 (48%), Gaps = 3/325 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + ++  + +  F ++ S G   S++   +L+    +   ++ A+    ++   S  + +V
Sbjct: 60  QARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVR-SGIELNV 118

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YT +I++ +  K  +FD ++  L+EM   GI    VTYNT+I  Y +    EE     ++
Sbjct: 119 YTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNS 178

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M + G   P +FT N++I+     G   + +    E   +G+  D  T N L     R  
Sbjct: 179 MADKG-LKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRD 237

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            + + + +   M ++   P +V+++ +I  F +  H+++   YF+ MK  G+ P+++ Y 
Sbjct: 238 NFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYT 297

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+  Y + G +++   I  ++     +LD   +N I++   +   +    +LF  M ER
Sbjct: 298 VLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVER 357

Query: 306 HCVPDNITFATMIQAYNALG-MTEA 329
             +PD  TF T+I  +   G MT+A
Sbjct: 358 GALPDFYTFTTLIHGHCQDGNMTKA 382



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 148/355 (41%), Gaps = 37/355 (10%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+   +  Y  L+ AY + GLL+EAF  +N M      KP ++TY+ +I    K  
Sbjct: 144 MEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMAD-KGLKPSLFTYNAIINGLCKKG 202

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R+   + IL EM  +G+     TYNT++    +   F E +  F  M+  G   PD+ + 
Sbjct: 203 RYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQG-VVPDLVSF 261

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG-------------- 185
           +S+I+ +  + ++++   ++ +    G+  D     +L   Y R G              
Sbjct: 262 SSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLE 321

Query: 186 ---------------------MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
                                M      + D M +R   P   T+  +I    + G++ K
Sbjct: 322 QGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTK 381

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
               F  M  R +KP+ + Y +L+  + K G + K   +   + +  +  +   +  +I+
Sbjct: 382 ALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILIN 441

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           AY   G V +   L+  M E+   P  +T  T+I+ Y   G +  A     +MIA
Sbjct: 442 AYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIA 496



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 116/252 (46%), Gaps = 4/252 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK+     A  LF+ M+  G  P    +T L+  + Q G + +A S    M    
Sbjct: 334 ILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQ-R 392

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           + KPD+  Y+ LI    K    +   ++   M    I  + +TY  +I+ Y       E 
Sbjct: 393 NIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEA 452

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              +  M+E G   P + T N++I  Y  SG+  K +++       GV  D  + N L  
Sbjct: 453 FRLWDVMIEKG-IKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 511

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + R    DK    ++ M+K    P ++TYN+V+  F + G +++ E   +KM  +G+ P
Sbjct: 512 GFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINP 571

Query: 240 NSITYCSLVSAY 251
           +  TY +L++ +
Sbjct: 572 DRSTYTALINGH 583



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 150/346 (43%), Gaps = 35/346 (10%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM----- 55
           + +  + +  +QA + F  M   GL P   +YT L+  Y ++G + EA    ++M     
Sbjct: 265 IAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGC 324

Query: 56  -----------------KSVSDCK------------PDVYTYSILIKSCTKFHRFDLIEK 86
                            K ++D              PD YT++ LI    +         
Sbjct: 325 VLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALS 384

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +   M+   I+   V YNT+IDG+ K  + E+    +  M+ S    P+  T   +I+AY
Sbjct: 385 LFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMI-SRKIFPNHITYGILINAY 443

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
            + G++ +  + ++     G+K  + T N + K Y R+G   K    +  M  +   P  
Sbjct: 444 CSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDH 503

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           ++YN +I  F +  +++K   +  KM+  G+ P+ ITY  +++ + + G + + + +LR+
Sbjct: 504 ISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRK 563

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           +    +  D   +  +I+ +    ++ +       M +R   PD++
Sbjct: 564 MIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDV 609



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 158/342 (46%), Gaps = 5/342 (1%)

Query: 3   MLGKCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +LG   + +   L +EV   ++  G++ +V     +V+A  + G  D+  S +++M+  +
Sbjct: 89  LLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEG-N 147

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
               D+ TY+ LI +  +    +   +I+  M+  G++ S  TYN II+G  K  ++   
Sbjct: 148 GIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARA 207

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +     M+  G   PD  T N+++       N  + ++ + E    GV  D+ + + L  
Sbjct: 208 KGILIEMLNIG-LSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIA 266

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + R    D+       M+K    P  V Y +++  + + G++ +  +   +M  +G   
Sbjct: 267 VFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVL 326

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + I Y ++++   K  ++   D +  ++     + D   F  +I  + Q G++ K   LF
Sbjct: 327 DVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLF 386

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            TM +R+  PD + + T+I  +  +G  E A  L + MI+ K
Sbjct: 387 GTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRK 428



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 126/279 (45%), Gaps = 1/279 (0%)

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +C  +   + +LI++  +  +     +    +   G   S    N+++ G  K    E  
Sbjct: 43  NCGTNNLVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELA 102

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 +V SG    +++TLN M++A    G  + ++ + +E    G+ AD+ T N L  
Sbjct: 103 WEVHREVVRSG-IELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIG 161

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +Y R G+ ++   +M+ M  +   P++ TYN +I    K G   + +    +M + G+ P
Sbjct: 162 AYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSP 221

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           ++ TY +L+    +     +   I  ++    V+ D   F+ +I+ + +   +++    F
Sbjct: 222 DTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYF 281

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             MK+   VPDN+ +  ++  Y   G    A  + ++M+
Sbjct: 282 RDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEML 320



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C+  +  +A      M++ G+ P    Y  L++ + +   +D+AF  IN M+   
Sbjct: 474 VIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEK-E 532

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD+ TY++++    +  R    E +L +M   GI     TY  +I+G+       E 
Sbjct: 533 GLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEA 592

Query: 120 ESSFSAMVESGGCHPDIF 137
                 M++ G    D+F
Sbjct: 593 FRFHDEMLQRGFAPDDVF 610


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 158/337 (46%), Gaps = 6/337 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +   M   G +P + ++T+L+S Y   G  +EA+  + +M +   C PDV  Y+ L
Sbjct: 266 EAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEM-TARGCAPDVILYTSL 324

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R      +   M   G    A+TY TII  + K    E        M +SG 
Sbjct: 325 IDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSG- 383

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD F  NS++  Y     +++    Y+     G+K +  T N+L     + G  D+  
Sbjct: 384 VGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAF 443

Query: 192 SVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           S+  + ++K    PT+V+Y I+I+  GKAG + +    F++M  RG+ P   TY SL+ +
Sbjct: 444 SLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYS 503

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            +KAG I +   ++  +    V  D   ++ +I+    +  V+   ++F  M +R C P+
Sbjct: 504 LAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPN 563

Query: 311 NITFATMIQAYNALGMT---EAAQNLENKMIAMKENS 344
            +T+  + + + A G     EA +   ++ +AM+  S
Sbjct: 564 EVTYKVLRRGFRAAGRALDLEAVKQHFSQGVAMEAGS 600



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 146/332 (43%), Gaps = 10/332 (3%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA-FSTINDMKSVSDC 61
           G CK  QP+    L    L    +P V +YT+++  Y ++G LD   F  +    S+   
Sbjct: 51  GFCKAGQPQVGHKLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASL--- 106

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
             DV +Y+ +IK      R D   ++  E+   G   + V Y  +IDG  KA + E+   
Sbjct: 107 --DVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLK 164

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           +F  M  S  C P   T   +I     +  +    K + +    G   D  T   L   +
Sbjct: 165 NFEEMSGSS-CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGF 223

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            +A   D+ R ++D M  +   PT VTY  ++  F K   I + +E   +M+ RG +P  
Sbjct: 224 SKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGL 283

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             + SL+S Y   G   +   +L ++       D   +  +I      G V +   +F +
Sbjct: 284 FIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDS 343

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           M E+ C PD +T+ T+IQ ++ +G  EAA  +
Sbjct: 344 MIEKGCAPDALTYGTIIQNFSKIGNVEAAGEI 375



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 147/362 (40%), Gaps = 36/362 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS---- 59
           L   K+ ++A  LFE + + G  P+V  YTA++    ++G +++      +M   S    
Sbjct: 118 LADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPT 177

Query: 60  ------------------------------DCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
                                          C PD  TY+ LI   +K  + D   K+L 
Sbjct: 178 RTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLD 237

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
            M   G E +AVTY +I+ G+ K     E +   + M E G C P +F   S++S Y + 
Sbjct: 238 VMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERG-CEPGLFIFTSLLSYYLSK 296

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G  E+  +   E    G   D+     L       G   + R V D M ++   P  +TY
Sbjct: 297 GRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTY 356

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
             +I+ F K G++E   E  + M   G+ P+   Y SL+  Y K   + +   +  ++  
Sbjct: 357 GTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA 416

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-ITFATMIQAYNALGMTE 328
           S +  +   FN ++    + G  ++   LF  M E+  VP   +++  +I      G   
Sbjct: 417 SGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVS 476

Query: 329 AA 330
            A
Sbjct: 477 EA 478



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 145/330 (43%), Gaps = 10/330 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A   F  M+ +G +P V  +T L+  + ++G        +N  +++   +PDV+ Y+ 
Sbjct: 24  DEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLN--QALKRFRPDVFLYTS 81

Query: 71  LIKSCTKFHRFDL--IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I    K    D      +  + S        ++Y T+I G   +K+ +E    F  + +
Sbjct: 82  VIHGYCKAGDLDTGYFRAVTPKASL-----DVISYTTVIKGLADSKRIDEACELFEEL-K 135

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           + GC P++    ++I     +G IE   K + E +         T  ++     +A M  
Sbjct: 136 TAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLP 195

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
               V + M ++   P  +TY  +I+ F KA  +++  +    M  +G +P ++TY S+V
Sbjct: 196 DACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIV 255

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             + K  +I +   ++ Q+           F  ++S Y   G  E+  ++   M  R C 
Sbjct: 256 HGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCA 315

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMI 338
           PD I + ++I    + G    A+++ + MI
Sbjct: 316 PDVILYTSLIDLLFSTGRVPEARHVFDSMI 345



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 9/247 (3%)

Query: 94  LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153
           +G E + V+YNT+I G     K +E    F++M+++ GC PD+    ++I  +  +G  +
Sbjct: 1   MGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDN-GCEPDVIAFTTLIHGFCKAGQPQ 59

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK--MRSVMDFMQKRFFFPTVVTYNI 211
              K  N+  L   + D+     +   Y +AG  D    R+V            V++Y  
Sbjct: 60  VGHKLLNQ-ALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASL-----DVISYTT 113

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           VI+    +  I++  E F+++K  G  PN + Y +++    KAG I        ++  S 
Sbjct: 114 VIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSS 173

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
            +     +  +I    +A  +    ++F  M ++ CVPD IT+ T+I  ++     + A+
Sbjct: 174 CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEAR 233

Query: 332 NLENKMI 338
            L + M+
Sbjct: 234 KLLDVML 240


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 156/352 (44%), Gaps = 5/352 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +  + E+A  LF  +   G+ P++  Y  ++  YG+ G        + +    +  +P
Sbjct: 190 LSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEP 249

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +T S +I +C +    D       ++   G     VTYN ++  +GKA  + E     
Sbjct: 250 DDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVL 309

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E  GC PD  T N +   Y  +G  E+  K  +     G+  +  T N +  +Y  
Sbjct: 310 KEM-EDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYAN 368

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+  ++ D M+K  + P V TYN++    GK      M E  ++M   G  PN +T
Sbjct: 369 VGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVT 428

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + ++++   K G+   V  +L  +++  V L    +N +ISAYG+ G      +++  M 
Sbjct: 429 WNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMI 488

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI--AMKEN--SGKKLIQC 351
                P   T+  ++   +  G    AQ++ +KM+    K N  S   L+QC
Sbjct: 489 SSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQC 540



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 147/303 (48%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           +V A G+ G  D     +++M      + DV  Y+ ++ + ++  R++   ++ AE+   
Sbjct: 150 VVRALGREGQHDVVCDLLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQ 209

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G+  + VTYN ++D YG+  +      +    + + G  PD FT +++I+A G  G +++
Sbjct: 210 GVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQ 269

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
              ++ +    G    + T N L + +G+AG Y +   V+  M+     P  VTYN +  
Sbjct: 270 AVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAG 329

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
           T+ +AG  E+  +    M  +G+ PN+ TY ++++AY+  G + +  ++  +++ +  + 
Sbjct: 330 TYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVP 389

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           +   +N I    G+      M E+   M    C P+ +T+ TM+      GM +    + 
Sbjct: 390 NVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVL 449

Query: 335 NKM 337
           N M
Sbjct: 450 NGM 452



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 172/364 (47%), Gaps = 37/364 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A+   + M S GL P+   Y  +++AY   G +DEA +  + MK  +   P+V TY++
Sbjct: 338 EEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKK-NGYVPNVNTYNL 396

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +     K  RF  + ++L EMS  G   + VT+NT++   GK +  E+  +     ++S 
Sbjct: 397 IFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGK-RGMEDYVTRVLNGMKSC 455

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G      T N++ISAYG  G+     K Y+E    G    + T N L     R G +   
Sbjct: 456 GVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTA 515

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----------------------------- 221
           +S++  M K  F P   +Y+++++ + K G+                             
Sbjct: 516 QSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSWVILRTLVIA 575

Query: 222 ------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                 +E +E+ F+++K +G KP+ + + S+++ Y+K GL  K   +   ++ S +  D
Sbjct: 576 NFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPD 635

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N ++  Y ++ +  +  ++   +K     PD +++ T+I  +   G+ + AQ + +
Sbjct: 636 LITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILS 695

Query: 336 KMIA 339
           +MIA
Sbjct: 696 EMIA 699



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 150/357 (42%), Gaps = 35/357 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA   FE + + G  P V  Y AL+  +G++G   EA   + +M+  S C+PD  TY+ 
Sbjct: 268 DQAVAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMED-SGCQPDAVTYNE 326

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM----------- 119
           L  +  +   F+   K L  M+  G+  +  TYNT++  Y    + +E            
Sbjct: 327 LAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNG 386

Query: 120 -----------------ESSFSAMVE------SGGCHPDIFTLNSMISAYGNSGNIEKME 156
                            +S F+AM+E        GC P+  T N+M++  G  G  + + 
Sbjct: 387 YVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVT 446

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           +  N     GV+    T N L  +YGR G       + D M    F P + TYN ++   
Sbjct: 447 RVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVL 506

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            + G     +    KM   G KPN  +Y  L+  Y+K G    ++SI ++V    +    
Sbjct: 507 SRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPSW 566

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                ++ A  +   +E + + F  +K +   PD + F +M+  Y   G+   A  +
Sbjct: 567 VILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEM 623



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 161/348 (46%), Gaps = 2/348 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + GK    +  + +   M S G++ S D Y  L+SAYG+ G    AF   ++M S S 
Sbjct: 433 LAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMIS-SG 491

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P + TY+ L+   ++   +   + I+++M   G + +  +Y+ ++  Y K      +E
Sbjct: 492 FTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIE 551

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            S    V  G   P    L +++ A      +E +EK + E    G K D+   N +   
Sbjct: 552 -SIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAM 610

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y + G+Y K   + D +++    P ++TYN +++ + K+    + E+  K++K   +KP+
Sbjct: 611 YAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPD 670

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ++Y ++++ + K GLI +   IL ++    +      ++ ++  Y       +  E+  
Sbjct: 671 VVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVVN 730

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 348
            M   +  P  +T+  ++ +Y      + A+   +++    +N  +KL
Sbjct: 731 YMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEISDTDQNFDQKL 778


>gi|410110133|gb|AFV61146.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rhodocnemis]
          Length = 345

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 135/268 (50%), Gaps = 5/268 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  Y + KKF E  S 
Sbjct: 20  PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSV 79

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ ++ + N L + YG
Sbjct: 80  FSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYG 138

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            A ++ +   +   MQ++     VVTYN +I  +GK    EK     ++M+ RG++PNSI
Sbjct: 139 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSI 198

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +++S + K G + +   + +++ +S V +D   F  +I AY +AG V     L   +
Sbjct: 199 TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 258

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
           K     PDNI   T I      G  E A
Sbjct: 259 KR----PDNIPRDTAIHILAGAGRIEEA 282



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 128/251 (50%), Gaps = 1/251 (0%)

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           I + +  LG     V YN +I+ +GKAK F E  S  S M ++ G  P+  + +++++ Y
Sbjct: 9   IFSRLKRLGFMPDLVAYNAMINVFGKAKLFREARSLISEM-KTAGVMPNTTSYSTLLTMY 67

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +    +    ++E   +    D+ T NI+   YG+ GM  +   +   M+K    P V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K ++++++
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQE 187

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+
Sbjct: 188 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGL 247

Query: 327 TEAAQNLENKM 337
              A+ L +++
Sbjct: 248 VAHAKRLLHEL 258



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 146/321 (45%), Gaps = 10/321 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S  ++M+ +  C 
Sbjct: 31  VFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIK-CL 89

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 90  LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 149

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +      ++ T NSMI  YG +   EK      E    G++ +  T + +   +G
Sbjct: 150 FRLM-QRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWG 208

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + G  D  R+ M F + R     +  + +  +I  + +AG +     + K++ H   +P+
Sbjct: 209 KVGKLD--RAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVA----HAKRLLHELKRPD 262

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +I   + +   + AG I +   + RQ  ++  + D   F  +I    +      + E+F 
Sbjct: 263 NIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFD 322

Query: 301 TMKERHCVPDNITFATMIQAY 321
            M+     PD+   A ++ AY
Sbjct: 323 KMRGLGYFPDSDVIAIVLNAY 343



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 70/135 (51%)

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 3   YSKAISIFSRLKRLGFMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 62

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++ Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 307 CVPDNITFATMIQAY 321
             P+ +++ T+++ Y
Sbjct: 123 IEPNVVSYNTLLRVY 137


>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
          Length = 410

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 158/336 (47%), Gaps = 4/336 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  +A  +F+ M   GL P+   YTAL+  Y   G  ++ F+   +M+     +
Sbjct: 47  GCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRR-GGVE 105

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++YTY+ LI    +   F+    +  EM   GI  + V+YNT+I G  +  K  +  + 
Sbjct: 106 PNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWD-AAK 164

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+ + G  P I T N ++  YG +G +     ++N+    G +    T N+L   + 
Sbjct: 165 LLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFC 224

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           RA    +    +  M++R   PT VTY I+I++F +  H+ K  E    M+  G++ ++ 
Sbjct: 225 RARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAH 284

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  LV A    G +     + + +    V      ++ +I  YG+ G   K  +L + M
Sbjct: 285 TYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEM 344

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +++  +P++ ++   I+        + A+ L + M+
Sbjct: 345 RQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMV 380



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 148/323 (45%), Gaps = 13/323 (4%)

Query: 19  VMLSDGLKPS-----VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 73
            ML+ G K       V   TALV+   + G + EA    ++M  +    P+  TY+ L+ 
Sbjct: 23  AMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLG-LAPNEVTYTALMH 81

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
                 + +    +  EM   G+E +  TYN +I  + +  +FE   S F  M   G   
Sbjct: 82  GYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVR 141

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
            ++ + N++I+     G +    K  +     G +  I T N+L   YG+AG   KM + 
Sbjct: 142 -NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAG---KMSNA 197

Query: 194 MDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + F   M+   F P+ VTYN++I  F +A  + +       MK RG++P  +TY  L+ +
Sbjct: 198 LPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDS 257

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           +++   + K   IL  +E + + +D   +  ++ A    G+++   +LF +M E+   P 
Sbjct: 258 FARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPS 317

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
           N+ +  MI  Y   G +  A  L
Sbjct: 318 NVIYDMMIYGYGREGSSYKALKL 340



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 119/259 (45%), Gaps = 14/259 (5%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C+  +   A+ L ++M ++G +PS+  +  LV  YG++G +  A    N MK+ +
Sbjct: 149 LIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKA-A 207

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKK 115
             +P   TY++LI    +        + L++M   G+E + VTY  +ID + +     K 
Sbjct: 208 GFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKA 267

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           FE +     A +E  G   D  T   ++ A    GN++   K +      GV+      +
Sbjct: 268 FEIL-----AGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYD 322

Query: 176 ILTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           ++   YGR G  Y  ++ +M+ M+++   P   +Y + I    K    ++ E     M  
Sbjct: 323 MMIYGYGREGSSYKALKLIME-MRQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMVR 381

Query: 235 RGMKPNSITYCSLVSAYSK 253
            G++ +     +L+ A ++
Sbjct: 382 AGLQTSESICQALLDAKAR 400



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 70/170 (41%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           D+     L     + G   + R V D M      P  VTY  ++  +   G  EK    F
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M+  G++PN  TY  L+  + + G   +  S+  ++    ++ +   +N +I+   + 
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           G +    +L   M+     P  ITF  ++  Y   G    A    N+M A
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKA 206


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 153/343 (44%), Gaps = 16/343 (4%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLG  K   +A  +F  + +   +P+   Y +++      G  ++     N+M +   C+
Sbjct: 168 MLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQ 227

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DGYGKAKK 115
           PD  TYS LI +  K  R D   ++L EM   G++ +A  Y  II       + +G    
Sbjct: 228 PDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSL 287

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           FEEM   +        C PD+FT   +I   G +G I++   +Y+E    G K D   +N
Sbjct: 288 FEEMRYMY--------CRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMN 339

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKH 234
            +    G+AG  D    + + M      P VVTYN +I+  F     + ++  +F++MK 
Sbjct: 340 NMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKG 399

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+ P+  TY  L+  + K   I K   +L +++          +  +I A G+A   + 
Sbjct: 400 SGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 459

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             ELF  +KE         +A MI+     G  + A NL ++M
Sbjct: 460 ACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEM 502



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 150/326 (46%), Gaps = 3/326 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M     +P V  YT L+   G++G +DEA+   ++M+    CKPD    + +I   
Sbjct: 287 LFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQR-EGCKPDTVVMNNMINFL 345

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHP 134
            K  R D   K+  EM       + VTYNTII    ++K +  E+ S F  M +  G  P
Sbjct: 346 GKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERM-KGSGISP 404

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
             FT + +I  +  +  IEK      E +  G          L  + G+A  YD    + 
Sbjct: 405 SPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 464

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             +++     +   Y ++I+  GKAG ++     F +M   G  PN   Y +L+S  ++A
Sbjct: 465 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARA 524

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
            ++ +  + +R+++    + D   +N I++   + G   +  E+   MK     PD +++
Sbjct: 525 CMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSY 584

Query: 315 ATMIQAYNALGMTEAAQNLENKMIAM 340
            T++ A +  GM E A  L  +M A+
Sbjct: 585 NTVLSALSHAGMFEEAAELMKEMNAL 610



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 135/287 (47%), Gaps = 5/287 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVSDCK 62
           LGK  + +    LFE M      P+V  Y  ++ A  +S   + E FS    MK  S   
Sbjct: 345 LGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKG-SGIS 403

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++     
Sbjct: 404 PSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 123 FSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F  + E+ G     ++ +  MI   G +G ++     ++E + +G   ++   N L    
Sbjct: 464 FQELKENCGSSSARVYAV--MIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGL 521

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            RA M D+  + M  MQ+    P + +YNI++    K G   +  E    MK+  +KP++
Sbjct: 522 ARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDA 581

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           ++Y +++SA S AG+  +   +++++       D   ++ I+ A G+
Sbjct: 582 VSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGK 628



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 145/318 (45%), Gaps = 3/318 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + ++A   +  M  +G KP   V   +++  G++G LD+      +M  VS C P
Sbjct: 310 LGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM-GVSHCIP 368

Query: 64  DVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           +V TY+ +IK+  +   R   +      M   GI  S  TY+ +IDG+ K  + E+    
Sbjct: 369 NVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMML 428

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E G   P      S+I A G +   +   + + E       +  +   ++ K  G
Sbjct: 429 LEEMDEKG-FPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLG 487

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG  D   ++ D M K    P V  YN ++    +A  +++     +KM+  G  P+  
Sbjct: 488 KAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDIN 547

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y  +++  +K G   +   +L  ++NS +  D   +N ++SA   AG  E+  EL   M
Sbjct: 548 SYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607

Query: 303 KERHCVPDNITFATMIQA 320
                  D IT++++++A
Sbjct: 608 NALGFEYDLITYSSILEA 625



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 96/255 (37%), Gaps = 36/255 (14%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           TY  +I      +++ EM      MV S  C      L+ +I   GN+  I K    + +
Sbjct: 125 TYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQ 184

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAG 220
                 +   Q  N +       G Y+K+  + + M       P  VTY+ +I  F K G
Sbjct: 185 IKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLG 244

Query: 221 HIEKMEEYFKKMKHRGMKPNS-----------------------------------ITYC 245
             +       +MK  GM+P +                                    TY 
Sbjct: 245 RQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYT 304

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+    KAG I +      +++      DT   N +I+  G+AG ++   +LF  M   
Sbjct: 305 ELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS 364

Query: 306 HCVPDNITFATMIQA 320
           HC+P+ +T+ T+I+A
Sbjct: 365 HCIPNVVTYNTIIKA 379



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 1/165 (0%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           L+ + +  G A M  K  ++   ++ R   PT   YN +I      G  EK+ E + +M 
Sbjct: 162 LSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMS 221

Query: 234 HRGM-KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           + G  +P+++TY +L+SA+ K G       +L +++ + +      +  IIS + +  +V
Sbjct: 222 NEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNV 281

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                LF  M+  +C PD  T+  +I+     G  + A +  ++M
Sbjct: 282 HGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEM 326


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 161/343 (46%), Gaps = 7/343 (2%)

Query: 2   VMLGKCKQPEQASLLFEVML--SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
            +LG   +  Q SL  E+       +   V VY A++  Y +SG   +A   ++ M+   
Sbjct: 196 AILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQ-R 254

Query: 60  DCKPDVYTYSILIKSCTKFHRF--DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            C PD+ +++ LI +  K      +L  ++L  +   G+   A+TYNT++    +    +
Sbjct: 255 GCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLD 314

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
                F  M E+  C PD++T N+MIS YG  G   + E+ + E  L G   D  T N L
Sbjct: 315 GAVKVFEDM-EAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSL 373

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RG 236
             ++ R    +K++ V   MQK  F    +TYN +I  +GK G ++   + +K MK   G
Sbjct: 374 LYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSG 433

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             P++ITY  L+ +  KA   ++  +++ ++ +  +      ++ +I  Y +AG  E+  
Sbjct: 434 RNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAE 493

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           + F  M      PDN+ ++ M+        T  A  L   MI+
Sbjct: 494 DTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMIS 536



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 135/311 (43%), Gaps = 7/311 (2%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFST-INDMKSVSDCKPDVYTYSI 70
           +A  L + M   G  P +  +  L++A  +SG L    +  + DM   S  +PD  TY+ 
Sbjct: 243 KAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNT 302

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +C++    D   K+  +M     +    TYN +I  YG+     E E  F  + E  
Sbjct: 303 LLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMEL-ELK 361

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD-- 188
           G  PD  T NS++ A+    N EK+++ Y +   MG   D  T N +   YG+ G  D  
Sbjct: 362 GFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLA 421

Query: 189 -KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            ++   M  +  R   P  +TY ++I++ GKA    +      +M   G+KP   TY +L
Sbjct: 422 LQLYKDMKGLSGRN--PDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSAL 479

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  Y+KAG   + +     +  S    D   ++ ++    +  +  K   L+  M     
Sbjct: 480 ICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGH 539

Query: 308 VPDNITFATMI 318
            P    +  MI
Sbjct: 540 TPSYTLYELMI 550



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 115/233 (49%), Gaps = 2/233 (0%)

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           AE       CS + Y  II+ YGK K +++ ES    + +SG   PD+ T NS++SAY  
Sbjct: 742 AETKGFHFACSPM-YTDIIEAYGKQKLWQKAESVVGNLRQSGRT-PDLKTWNSLMSAYAQ 799

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G  E+    +N     G    ++++NIL  +    G  +++  V++ +Q   F  +  +
Sbjct: 800 CGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSS 859

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
             ++++ F +AG+I ++++ +  MK  G  P    Y  ++    K   +   + ++ ++E
Sbjct: 860 ILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEME 919

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            ++  ++   +N ++  Y    D +K  +++  +KE    PD  T+ T+I  Y
Sbjct: 920 EANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY 972



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 144/329 (43%), Gaps = 2/329 (0%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            GK K  ++A  +   +   G  P +  + +L+SAY Q G  + A +  N M       P 
Sbjct: 763  GKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMR-DGPSPT 821

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            V + +IL+ +     R + +  ++ E+  +G + S  +   ++D + +A    E++  +S
Sbjct: 822  VESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYS 881

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +M ++ G  P I     MI        +   E   +E      K ++   N + K Y   
Sbjct: 882  SM-KAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAI 940

Query: 185  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              Y K   V   +++    P   TYN +I  + +    E+     ++M++ G+ P   TY
Sbjct: 941  EDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTY 1000

Query: 245  CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             SL+SA+ K   + + + +  ++ +  + LD  F++ ++     +G   K  +L   MK 
Sbjct: 1001 KSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN 1060

Query: 305  RHCVPDNITFATMIQAYNALGMTEAAQNL 333
                P   T   ++ +Y++ G  + A+ +
Sbjct: 1061 AGIEPTLATMHLLMVSYSSSGNPQEAEKV 1089



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 148/355 (41%), Gaps = 37/355 (10%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            M    +C   E+A  +F  M+ DG  P+V+    L+ A    G L+E +  + +++ +  
Sbjct: 794  MSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMG- 852

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             K    +  +++ +  +      ++KI + M   G   +   Y  +I+   K K+  + E
Sbjct: 853  FKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAE 912

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
               S M E      ++   NSM+  Y    + +K  + Y      G++ D  T N L   
Sbjct: 913  IMVSEM-EEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIM 971

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK--------- 231
            Y R    ++   +M  M+     P + TY  +I  FGK   +E+ E+ F++         
Sbjct: 972  YCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031

Query: 232  --------------------------MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
                                      MK+ G++P   T   L+ +YS +G   + + +L 
Sbjct: 1032 RSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLS 1091

Query: 266  QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +++++V L T  ++ +I AY ++ D     E  L MK+    PD+  +   ++A
Sbjct: 1092 NLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRA 1146



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 111/253 (43%), Gaps = 1/253 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +FE M +   +P +  Y A++S YG+ GL  EA     +++ +    PD  TY+ L+ + 
Sbjct: 319 VFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELE-LKGFFPDAVTYNSLLYAF 377

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +    + ++++  +M  +G     +TYNTII  YGK  + +     +  M    G +PD
Sbjct: 378 ARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPD 437

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T   +I + G +    +     +E   +G+K  +QT + L   Y +AG  ++      
Sbjct: 438 AITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFS 497

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M +    P  + Y+++++   +     K    ++ M   G  P+   Y  ++    K  
Sbjct: 498 CMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKEN 557

Query: 256 LIMKVDSILRQVE 268
               +   +R +E
Sbjct: 558 RSDDIQKTIRDME 570



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/374 (19%), Positives = 159/374 (42%), Gaps = 50/374 (13%)

Query: 12   QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS---DCKPDVYTY 68
            +AS +F  +   G + S  V  ++V  Y + G  + A   +N  ++      C P    Y
Sbjct: 699  EASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSP---MY 755

Query: 69   SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
            + +I++  K   +   E ++  +   G      T+N+++  Y +   +E   + F+ M+ 
Sbjct: 756  TDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMR 815

Query: 129  SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             G   P + ++N ++ A    G +E++     E   MG K    ++ ++  ++ RAG   
Sbjct: 816  DGP-SPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 189  KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME---------------------- 226
            +++ +   M+   + PT+  Y ++IE   K   +   E                      
Sbjct: 875  EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934

Query: 227  -------------EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN--SD 271
                         + ++++K  G++P+  TY +L+  Y +     +   +++Q+ N   D
Sbjct: 935  KMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994

Query: 272  VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
              LDT  +  +ISA+G+   +E+  +LF  +  +    D   + TM++     G    A+
Sbjct: 995  PKLDT--YKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052

Query: 332  NLENKMIAMKENSG 345
                K++ M +N+G
Sbjct: 1053 ----KLLQMMKNAG 1062



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 88/172 (51%), Gaps = 2/172 (1%)

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK--MEEY 228
           +Q  N +   Y R+G + K + ++D M++R   P ++++N +I    K+G +      E 
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
              +++ G++P++ITY +L+SA S+   +     +   +E      D   +N +IS YG+
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGR 344

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            G   +   LF+ ++ +   PD +T+ +++ A+     TE  + +  +M  M
Sbjct: 345 CGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM 396



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 127/278 (45%), Gaps = 8/278 (2%)

Query: 3    MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 61
            +L K K+   A ++   M     K  + ++ +++  Y     +++   T+   + + +  
Sbjct: 901  LLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTA---IEDYKKTVQVYQRIKETG 957

Query: 62   -KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             +PD  TY+ LI    +  R +    ++ +M  LG++    TY ++I  +GK K  E+ E
Sbjct: 958  LEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAE 1017

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              F  ++ S G   D    ++M+    +SG+  K EK        G++  + T+++L  S
Sbjct: 1018 QLFEELL-SKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVS 1076

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            Y  +G   +   V+  ++      T + Y+ VI+ + ++       E   +MK  G++P+
Sbjct: 1077 YSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPD 1136

Query: 241  SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
               +   V A S +   ++V  +L+ +E  D+  D P 
Sbjct: 1137 HRIWTCFVRAASFSKEKIEVMLLLKALE--DIGFDLPI 1172


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 166/337 (49%), Gaps = 4/337 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK     +A  L+  M + G+ P+V  Y+ L+  +  +G L EAF  +N+M  + +  
Sbjct: 159 GLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEM-ILKNIN 217

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+VYTY+IL+ +  K  +    + +LA M+  G++ + V+YNT++DGY    + +  +  
Sbjct: 218 PNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQM 277

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV+ G  +P++++ N MI     S  +++      E     +  +  T + L   + 
Sbjct: 278 FHTMVQKG-VNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFC 336

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G       ++  M  R     VVTY  +++   K  +++K    F KMK RG++PN  
Sbjct: 337 KLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKY 396

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+    K G       + + +      ++   +N +IS   + G +++   +   M
Sbjct: 397 TYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKM 456

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +E  C+PD +TF  +I++       + A+ L ++MIA
Sbjct: 457 EENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIA 493



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 157/336 (46%), Gaps = 8/336 (2%)

Query: 2   VMLGKCKQPE-QASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C + E + SL F + +++ G +     Y  L++   + G   E  S +  ++ + 
Sbjct: 86  LMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIG---ETRSALKLLRMIE 142

Query: 60  D--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           D   +P+V  Y+ +I    K    +    + +EM   GI  + +TY+T+I G+  A +  
Sbjct: 143 DRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLM 202

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E     + M+     +P+++T   ++ A    G +++ +         GVK ++ + N L
Sbjct: 203 EAFGLLNEMILKN-INPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTL 261

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              Y   G     + +   M ++   P V +YNI+I+   K+  +++     +++ H+ M
Sbjct: 262 MDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNM 321

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            PN++TY SL+  + K G I     +L+++ +     D   +  ++ A  +  +++K   
Sbjct: 322 VPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATA 381

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           LF+ MKER   P+  T+  +I      G  + AQ L
Sbjct: 382 LFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKL 417



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 154/345 (44%), Gaps = 24/345 (6%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K    A  LF+ M   G++P +     L++ +   G +  +F+ +  +  +   +P
Sbjct: 20  LVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLG-YQP 78

Query: 64  DVYTYSILIKS-CTK--------FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           +  T + L+K  C K        FH     +K++A+    G +   V+Y T+++G  K  
Sbjct: 79  NTITLNTLMKGLCLKGEVKKSLHFH-----DKVVAQ----GFQMDQVSYATLLNGLCK-- 127

Query: 115 KFEEMESSFS--AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
              E  S+     M+E     P++   N++I        + +    Y+E +  G+  ++ 
Sbjct: 128 -IGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVI 186

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T + L   +  AG   +   +++ M  +   P V TY I+++   K G +++ +     M
Sbjct: 187 TYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVM 246

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
              G+KPN ++Y +L+  Y   G +     +   +    V  +   +N +I    ++  V
Sbjct: 247 TKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRV 306

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++   L   +  ++ VP+ +T++++I  +  LG   +A +L  +M
Sbjct: 307 DEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEM 351



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 126/278 (45%), Gaps = 5/278 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  ++ ++ S  K   +     +  +M   GIE    T N +I+ +       +M  S
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCH---LGQMTFS 64

Query: 123 FSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           F+ +  +   G  P+  TLN+++      G ++K   ++++    G + D  +   L   
Sbjct: 65  FTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNG 124

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             + G       ++  ++ R   P VV YN +I+   K   + +  + + +M  RG+ PN
Sbjct: 125 LCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPN 184

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ITY +L+  +  AG +M+   +L ++   ++  +   +  ++ A  + G V++   L  
Sbjct: 185 VITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLA 244

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            M +    P+ +++ T++  Y  +G  + A+ + + M+
Sbjct: 245 VMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMV 282



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 125/276 (45%), Gaps = 6/276 (2%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           ++M   CK+ +  +A  L  VM  +G+KP+V  Y  L+  Y   G +  A    + M   
Sbjct: 225 ILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQ- 283

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               P+VY+Y+I+I    K  R D    +L E+ +  +  + VTY+++IDG+ K  +   
Sbjct: 284 KGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITS 343

Query: 119 MESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
                  M   G   P D+ T  S++ A   + N++K    + +    G++ +  T   L
Sbjct: 344 ALDLLKEMYHRG--QPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTAL 401

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                + G +   + +   +  +     V TYN++I    K G +++      KM+  G 
Sbjct: 402 IDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGC 461

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
            P+++T+  ++ +  +     K + +L ++   D++
Sbjct: 462 IPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDLL 497



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 127/310 (40%), Gaps = 8/310 (2%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P +  +  +V +  +      A S    M+ V   +PD++T +ILI       +      
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQ-VKGIEPDLFTLNILINCFCHLGQMTFSFT 66

Query: 87  ILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           +L ++  LG + + +T NT++ G    G+ KK       F   V + G   D  +  +++
Sbjct: 67  VLGKILKLGYQPNTITLNTLMKGLCLKGEVKK----SLHFHDKVVAQGFQMDQVSYATLL 122

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           +     G      K          + ++   N +     +  + ++   +   M  R  F
Sbjct: 123 NGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIF 182

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P V+TY+ +I  F  AG + +      +M  + + PN  TY  L+ A  K G + +  ++
Sbjct: 183 PNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNL 242

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L  +    V  +   +N ++  Y   G+V+   ++F TM ++   P+  ++  MI     
Sbjct: 243 LAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCK 302

Query: 324 LGMTEAAQNL 333
               + A NL
Sbjct: 303 SKRVDEAMNL 312


>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
 gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
          Length = 669

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 137/275 (49%), Gaps = 1/275 (0%)

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YTY++++K      + +L EK++ EM+  GI+    T++T+I+   + ++ EE    F  
Sbjct: 144 YTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFER 203

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M +S G  PD  T NS+I  YG  G + +  + Y +   +  K D  T   +   Y RAG
Sbjct: 204 M-KSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAG 262

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            Y  +  ++  M+     P  V  N ++ T  KAG + + ++ F +M+  G+ P  +T  
Sbjct: 263 DYQSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLS 322

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            LV  Y++ G   +   +   ++      D   +N ++ A  + G VE+  ++   MK  
Sbjct: 323 ILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRA 382

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            C PD++T+ T +  Y   GM + A+ + +K++A+
Sbjct: 383 GCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVAL 417



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 147/309 (47%), Gaps = 3/309 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L   +Q E +  L E M   G++P    ++ L++   +    +EA      MKS     
Sbjct: 152 ILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKS-EGIV 210

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY+ +I    +  R +   ++  ++  +  +   VTY  I + Y +A  ++ +   
Sbjct: 211 PDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIMQL 270

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M +SG   P+   +N+++     +G + + +K +NE    GV     TL+IL + Y 
Sbjct: 271 VQEMRDSGS-SPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYT 329

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G YD+   V + ++   +   V  YN +++   + G +E+ E+  K+MK  G  P+ +
Sbjct: 330 RVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHL 389

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY + ++ Y+  G++     +  +V   +   DTP F  +I A   AG++E+  ++F  M
Sbjct: 390 TYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEM 449

Query: 303 KERHCV-PD 310
            E  C  PD
Sbjct: 450 MESGCCSPD 458


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 150/322 (46%), Gaps = 5/322 (1%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
           ++     +P +  Y  L+ AYG+   L++A S    +   + C P   TY++L+++    
Sbjct: 177 IVYRSSFRPDIICYNLLIDAYGRKRQLNKAESIYAAVLE-AQCVPTEDTYALLLRAYCNA 235

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
                 E +++EM   GI  SA  YN  +DG  KA+   +    +  M +   C  +  T
Sbjct: 236 RSLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKER-CRTNTET 294

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
              MI+ YG S       K +NE   +G KA+I T   L  ++ R G+ +K   V + MQ
Sbjct: 295 YTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQ 354

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +    P V  YN ++E + +AG  +   E F  M+H G +P+  +Y  LV AY +AGL  
Sbjct: 355 QAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHR 414

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           + ++    ++   +         ++SA+ ++G+V +  ++   + +    PD      M+
Sbjct: 415 EAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAML 474

Query: 319 QAYNALGMTEAAQNLENKMIAM 340
            AY   G  +   ++E  + AM
Sbjct: 475 HAYARAGRLD---DMERLLAAM 493



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 153/303 (50%), Gaps = 8/303 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK KQP  A  +F  M S G K ++  YTALV+A+ + GL ++A      M+     +PD
Sbjct: 303 GKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGH-EPD 361

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VY Y+ L+++ ++        +I + M ++G E    +YN ++D YG+A    E E++F 
Sbjct: 362 VYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATFE 421

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           ++ + G   P + +   ++SA+  SGN+ + E+   + +  G++ D   LN +  +Y RA
Sbjct: 422 SLKQQG-MAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARA 480

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-----GMKP 239
           G  D M  ++  M        V ++N+ +  + +AG++ +ME  F+ ++ R     G+  
Sbjct: 481 GRLDDMERLLAAMDL-AGSADVGSHNVAVNAYARAGYLGRMEAAFEGIRRRKGKKGGIDA 539

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +++ S +  Y++     K   I  ++ ++    D      +++A      VE++  + 
Sbjct: 540 DVVSWTSRMGGYARKKEYGKCLEIFEEMVDAGCYPDAGTAKVLMAACSDERQVEQVAAIV 599

Query: 300 LTM 302
            +M
Sbjct: 600 RSM 602



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 145/288 (50%), Gaps = 7/288 (2%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G+ PS  VY A +    ++    +A      MK    C+ +  TY+++I    K  
Sbjct: 248 MQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKK-ERCRTNTETYTLMINVYGKSK 306

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +     KI  EM  +G + +  TY  +++ + +    E+ E  F  M ++G   PD++  
Sbjct: 307 QPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGH-EPDVYAY 365

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N+++ AY  +G  +   + ++    MG + D  + NIL  +YGRAG++ +  +  + +++
Sbjct: 366 NALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATFESLKQ 425

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           +   PT+ ++ +++    ++G++ + E+   ++   G++P++    +++ AY++AG   +
Sbjct: 426 QGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARAG---R 482

Query: 260 VDSILRQVENSDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +D + R +   D+    D    N  ++AY +AG + +M   F  ++ R
Sbjct: 483 LDDMERLLAAMDLAGSADVGSHNVAVNAYARAGYLGRMEAAFEGIRRR 530



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 1/152 (0%)

Query: 187 YDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           +D + SV +++  R  F P ++ YN++I+ +G+   + K E  +  +      P   TY 
Sbjct: 167 WDPIISVCEWIVYRSSFRPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYA 226

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+ AY  A  + + + ++ +++   +      +N  +    +A    K  E++  MK+ 
Sbjct: 227 LLLRAYCNARSLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKE 286

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            C  +  T+  MI  Y       +A  + N+M
Sbjct: 287 RCRTNTETYTLMINVYGKSKQPMSAMKIFNEM 318


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 156/318 (49%), Gaps = 16/318 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDC 61
           L KC Q ++A    + M++ G  P+V  Y ALV+   ++  ++ A + I  M  K V+  
Sbjct: 235 LCKCGQTDEAC--NDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVT-- 290

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK----FE 117
            PDV TYS+L+ +  K  R D   ++L  M+  G   + VT+N+IIDG  K+ +    F+
Sbjct: 291 -PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQ 349

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
                ++ M+      PD  T N +I+    +GN E+    + E     ++ D+ T   L
Sbjct: 350 IALQVYNRMLV-----PDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGAL 404

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                +AG  +  R ++D M      P VVTYN+++    K+G IE+  E+ ++M   G 
Sbjct: 405 IDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGC 464

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P S+TY SLV A  +A        ++ ++++     DT  +N ++    ++G  E+   
Sbjct: 465 VPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAIT 524

Query: 298 LFLTMKERHCVPDNITFA 315
           +   M  +   PD+ TFA
Sbjct: 525 VLEEMVGKGHQPDSFTFA 542



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 160/341 (46%), Gaps = 14/341 (4%)

Query: 5   GKCKQPEQAS--LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E  +   LFE ++  G  P V  Y  L+ +  ++G L+EA      M S   C 
Sbjct: 90  GLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSS-RGCV 148

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGK----AKKF 116
           P+V TYS+LI    K  R D   +++ EM+    +   + +TYN+ +DG  K    A+  
Sbjct: 149 PNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEAC 208

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           E M S     +      PD  T +++I      G  +  E   ++    G   ++ T N 
Sbjct: 209 ELMRSLRDGSLRVS---PDTVTFSTLIDGLCKCGQTD--EACNDDMIAGGYVPNVVTYNA 263

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L     +A   ++  ++++ M  +   P V+TY+++++ F KA  +++  E    M  RG
Sbjct: 264 LVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRG 323

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             PN +T+ S++    K+    +   I  QV N  ++ D   FN +I+   +AG+ E+  
Sbjct: 324 CTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQAS 383

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            LF  M  ++  PD +TF  +I      G  EAA+++ + M
Sbjct: 384 ALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLM 424



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 143/315 (45%), Gaps = 2/315 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E+A  + E M+  G+ P V  Y+ LV A+ ++  +DEA   ++ M S   C P
Sbjct: 268 LCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMAS-RGCTP 326

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V T++ +I    K  R     +I  ++    +    VT+N +I G  KA  FE+  + F
Sbjct: 327 NVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALF 386

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV +    PD+ T  ++I     +G +E      +    +GV  ++ T N+L     +
Sbjct: 387 EEMV-AKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCK 445

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G  ++    ++ M      P  +TY  ++    +A   +   +   K+K  G  P+++T
Sbjct: 446 SGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVT 505

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  LV    K+G   +  ++L ++       D+  F        ++G++    EL   + 
Sbjct: 506 YNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVL 565

Query: 304 ERHCVPDNITFATMI 318
            +  +PD  T ++++
Sbjct: 566 AKGMLPDATTCSSIL 580



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 137/354 (38%), Gaps = 48/354 (13%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           SV  Y  ++ +  ++G    A        +     P + TY+ +I    K +      ++
Sbjct: 44  SVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMEL 103

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             E+   G     VTYNT+ID   KA   EE       M  S GC P++ T + +I+   
Sbjct: 104 FEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGM-SSRGCVPNVVTYSVLINGLC 162

Query: 148 NSGNIEKMEKW-----------------YNEF----------------------NLMGVK 168
             G I++  +                  YN F                        + V 
Sbjct: 163 KVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVS 222

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            D  T + L     + G  D+  +  D M    + P VVTYN ++    KA  +E+    
Sbjct: 223 PDTVTFSTLIDGLCKCGQTDE--ACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAM 280

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            + M  +G+ P+ ITY  LV A+ KA  + +   +L  + +     +   FN II    +
Sbjct: 281 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 340

Query: 289 AGDVEKMGELF---LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +   ++ GE F   L +  R  VPD +TF  +I      G  E A  L  +M+A
Sbjct: 341 S---DRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVA 391


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 168/367 (45%), Gaps = 37/367 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS----- 57
           ++G+    E+ S +FE M  + +K +V  +TAL++AYG++G  + +   +  MK      
Sbjct: 91  IMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEP 150

Query: 58  --------VSDC----------------------KPDVYTYSILIKSCTKFHRFDLIEKI 87
                   ++ C                      +PD+ TY+ L+ +C+     +    +
Sbjct: 151 NLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMV 210

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
              M+  G+   AVTY +++D +  + +   +E     M E  G  PDI   NS+I AY 
Sbjct: 211 FKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREM-EDEGNSPDIAGYNSLIEAYA 269

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
           ++GN+      + +    G   D++T + L + YG  G ++++RS+   M++    PTV 
Sbjct: 270 DAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVA 329

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TYN +I+ FG+ G+ ++    F  M   G+KP+  TY +L+S   + GL  +   I + +
Sbjct: 330 TYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHM 389

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM- 326
             ++          +IS+YG+    +     +  ++E    P    +  +IQ Y   G+ 
Sbjct: 390 LTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLY 449

Query: 327 TEAAQNL 333
            EA   L
Sbjct: 450 VEAGSTL 456



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 147/313 (46%), Gaps = 1/313 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+  +YT ++   G+ GLL++      DM   +D K +VY ++ LI +  +  +++   
Sbjct: 79  KPTEHIYTIMIGIMGREGLLEKCSEIFEDMPE-NDVKWNVYAFTALINAYGRNGQYEASL 137

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +LA M    +E + +TYNT+++   K     E   +  A +   G  PD+ T N+++SA
Sbjct: 138 HLLARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSA 197

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
             + G +E+    +   N  GV AD  T   L  ++  +    ++  ++  M+     P 
Sbjct: 198 CSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPD 257

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           +  YN +IE +  AG++      FK+M+  G  P+  TY +L+  Y   G   +V S+  
Sbjct: 258 IAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFS 317

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            ++          +N +I  +G+ G  ++   LF  M +    PD+ T++ ++      G
Sbjct: 318 DMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGG 377

Query: 326 MTEAAQNLENKMI 338
           +T  A  +   M+
Sbjct: 378 LTREAAKIHQHML 390



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 133/285 (46%), Gaps = 2/285 (0%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           M+    CKP  + Y+I+I    +    +   +I  +M    ++ +   +  +I+ YG+  
Sbjct: 72  MQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNG 131

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQT 173
           ++ E      A ++     P++ T N++++A    G + E +   + +    G++ D+ T
Sbjct: 132 QY-EASLHLLARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLIT 190

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L  +    G+ ++   V   M +       VTY  +++TF  +  + ++EE  ++M+
Sbjct: 191 YNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREME 250

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G  P+   Y SL+ AY+ AG +     + +Q++      D   ++ ++  YG  G  E
Sbjct: 251 DEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFE 310

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++  LF  MKE    P   T+ ++IQ +   G  + + NL + M+
Sbjct: 311 QVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMV 355



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 36/251 (14%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M     C P       MI   G  G +EK  + + +     VK ++     L  +YG
Sbjct: 69  FKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYG 128

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNS 241
           R G Y+    ++  M+K    P ++TYN V+    K G   E +   F +M+H G++P+ 
Sbjct: 129 RNGQYEASLHLLARMKKERVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDL 188

Query: 242 ITYCSLVSAYSKAGLIM-----------------------------------KVDSILRQ 266
           ITY +L+SA S  GL+                                    +V+ +LR+
Sbjct: 189 ITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLRE 248

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +E+     D   +N +I AY  AG+V     +F  M+   C PD  T++T+++ Y   G 
Sbjct: 249 MEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGC 308

Query: 327 TEAAQNLENKM 337
            E  ++L + M
Sbjct: 309 FEQVRSLFSDM 319



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 142/327 (43%), Gaps = 7/327 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L   M  +G  P +  Y +L+ AY  +G +  A      M+    C PDV TYS L++  
Sbjct: 245 LLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQR-GGCAPDVETYSTLLRIY 303

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                F+ +  + ++M  L    +  TYN++I  +G+   F+E  + F  MV+SG   PD
Sbjct: 304 GNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSG-VKPD 362

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T ++++S  G  G   +  K +           ++    L  SYG+  MY        
Sbjct: 363 DATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYY 422

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            +++    P V  Y+ +I+ + K G   +       M   G +    +  S++ AYSK G
Sbjct: 423 RIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVG 482

Query: 256 L---IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           L    ++  S L+Q E S+V  D      ++  Y   G +E+  E F+ +KE   VP   
Sbjct: 483 LHDEALEFFSELQQKEGSEV--DERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGAR 540

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
            +  ++         + A  L ++MIA
Sbjct: 541 VYCLLLSLCVRRSKWDYATQLLDEMIA 567



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 147/335 (43%), Gaps = 6/335 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           EQA+++F+ M   G+      Y +LV  +  S  L      + +M+   +  PD+  Y+ 
Sbjct: 205 EQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGN-SPDIAGYNS 263

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI++            +  +M   G      TY+T++  YG    FE++ S FS M E  
Sbjct: 264 LIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELS 323

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P + T NS+I  +G  G  ++    +++    GVK D  T + L    GR G+  + 
Sbjct: 324 -TPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREA 382

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M      P++     +I ++GK    +     + +++  G+ P    Y +L+  
Sbjct: 383 AKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQG 442

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP- 309
           Y+K GL ++  S L  +  +         N ++ AY + G  ++  E F  ++++     
Sbjct: 443 YAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEV 502

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           D  T  T++  Y  +G+ E A+    + + +KE S
Sbjct: 503 DERTHETLLGVYCDMGLLEEAK---EEFVIIKETS 534



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 2/170 (1%)

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGH 221
           +L   K  +Q  +++ + +     + +   +  +MQ++ +  PT   Y I+I   G+ G 
Sbjct: 38  DLYRSKLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGL 97

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           +EK  E F+ M    +K N   + +L++AY + G       +L +++   V  +   +N 
Sbjct: 98  LEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNT 157

Query: 282 IISAYGQAG-DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +++A  + G D E +  LF  M+     PD IT+ T++ A ++ G+ E A
Sbjct: 158 VLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQA 207


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 161/343 (46%), Gaps = 7/343 (2%)

Query: 2   VMLGKCKQPEQASLLFEVML--SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
            +LG   +  Q SL  E+       +   V VY A++  Y +SG   +A   ++ M+   
Sbjct: 196 AILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQ-R 254

Query: 60  DCKPDVYTYSILIKSCTKFHRF--DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            C PD+ +++ LI +  K      +L  ++L  +   G+   A+TYNT++    +    +
Sbjct: 255 GCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLD 314

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
                F  M E+  C PD++T N+MIS YG  G   + E+ + E  L G   D  T N L
Sbjct: 315 GAVKVFEDM-EAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSL 373

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RG 236
             ++ R    +K++ V   MQK  F    +TYN +I  +GK G ++   + +K MK   G
Sbjct: 374 LYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSG 433

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             P++ITY  L+ +  KA   ++  +++ ++ +  +      ++ +I  Y +AG  E+  
Sbjct: 434 RNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAE 493

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           + F  M      PDN+ ++ M+        T  A  L   MI+
Sbjct: 494 DTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMIS 536



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 115/233 (49%), Gaps = 2/233 (0%)

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           AE       CS + Y  II+ YGK K +++ ES    + +SG   PD+ T NS++SAY  
Sbjct: 742 AETKGFHFACSPM-YTDIIEAYGKQKLWQKAESVVGNLRQSGRT-PDLKTWNSLMSAYAQ 799

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G  E+    +N     G    ++++NIL  +    G  +++  V++ +Q   F  +  +
Sbjct: 800 CGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSS 859

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
             ++++ F +AG+I ++++ +  MK  G  P    Y  ++    K   +   + ++ ++E
Sbjct: 860 ILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEME 919

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            ++  ++   +N ++  Y    D +K  +++  +KE    PD  T+ T+I  Y
Sbjct: 920 EANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY 972



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 144/329 (43%), Gaps = 2/329 (0%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            GK K  ++A  +   +   G  P +  + +L+SAY Q G  + A +  N M       P 
Sbjct: 763  GKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMR-DGPSPT 821

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            V + +IL+ +     R + +  ++ E+  +G + S  +   ++D + +A    E++  +S
Sbjct: 822  VESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYS 881

Query: 125  AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            +M ++ G  P I     MI        +   E   +E      K ++   N + K Y   
Sbjct: 882  SM-KAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAI 940

Query: 185  GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              Y K   V   +++    P   TYN +I  + +    E+     ++M++ G+ P   TY
Sbjct: 941  EDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTY 1000

Query: 245  CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             SL+SA+ K   + + + +  ++ +  + LD  F++ ++     +G   K  +L   MK 
Sbjct: 1001 KSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN 1060

Query: 305  RHCVPDNITFATMIQAYNALGMTEAAQNL 333
                P   T   ++ +Y++ G  + A+ +
Sbjct: 1061 AGIEPTLATMHLLMVSYSSSGNPQEAEKV 1089



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 148/355 (41%), Gaps = 37/355 (10%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            M    +C   E+A  +F  M+ DG  P+V+    L+ A    G L+E +  + +++ +  
Sbjct: 794  MSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMG- 852

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             K    +  +++ +  +      ++KI + M   G   +   Y  +I+   K K+  + E
Sbjct: 853  FKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAE 912

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
               S M E      ++   NSM+  Y    + +K  + Y      G++ D  T N L   
Sbjct: 913  IMVSEM-EEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIM 971

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK--------- 231
            Y R    ++   +M  M+     P + TY  +I  FGK   +E+ E+ F++         
Sbjct: 972  YCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031

Query: 232  --------------------------MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
                                      MK+ G++P   T   L+ +YS +G   + + +L 
Sbjct: 1032 RSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLS 1091

Query: 266  QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +++++V L T  ++ +I AY ++ D     E  L MK+    PD+  +   ++A
Sbjct: 1092 NLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRA 1146



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 111/253 (43%), Gaps = 1/253 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +FE M +   +P +  Y A++S YG+ GL  EA     +++ +    PD  TY+ L+ + 
Sbjct: 319 VFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELE-LKGFFPDAVTYNSLLYAF 377

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +    + ++++  +M  +G     +TYNTII  YGK  + +     +  M    G +PD
Sbjct: 378 ARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPD 437

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T   +I + G +    +     +E   +G+K  +QT + L   Y +AG  ++      
Sbjct: 438 AITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFS 497

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M +    P  + Y+++++   +     K    ++ M   G  P+   Y  ++    K  
Sbjct: 498 CMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKEN 557

Query: 256 LIMKVDSILRQVE 268
               +   +R +E
Sbjct: 558 RSDDIQKTIRDME 570



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/374 (19%), Positives = 159/374 (42%), Gaps = 50/374 (13%)

Query: 12   QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS---DCKPDVYTY 68
            +AS +F  +   G + S  V  ++V  Y + G  + A   +N  ++      C P    Y
Sbjct: 699  EASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSP---MY 755

Query: 69   SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
            + +I++  K   +   E ++  +   G      T+N+++  Y +   +E   + F+ M+ 
Sbjct: 756  TDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMR 815

Query: 129  SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             G   P + ++N ++ A    G +E++     E   MG K    ++ ++  ++ RAG   
Sbjct: 816  DGPS-PTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874

Query: 189  KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME---------------------- 226
            +++ +   M+   + PT+  Y ++IE   K   +   E                      
Sbjct: 875  EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934

Query: 227  -------------EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN--SD 271
                         + ++++K  G++P+  TY +L+  Y +     +   +++Q+ N   D
Sbjct: 935  KMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994

Query: 272  VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
              LDT  +  +ISA+G+   +E+  +LF  +  +    D   + TM++     G    A+
Sbjct: 995  PKLDT--YKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052

Query: 332  NLENKMIAMKENSG 345
                K++ M +N+G
Sbjct: 1053 ----KLLQMMKNAG 1062



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 88/172 (51%), Gaps = 2/172 (1%)

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK--MEEY 228
           +Q  N +   Y R+G + K + ++D M++R   P ++++N +I    K+G +      E 
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
              +++ G++P++ITY +L+SA S+   +     +   +E      D   +N +IS YG+
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGR 344

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            G   +   LF+ ++ +   PD +T+ +++ A+     TE  + +  +M  M
Sbjct: 345 CGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM 396



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 127/278 (45%), Gaps = 8/278 (2%)

Query: 3    MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 61
            +L K K+   A ++   M     K  + ++ +++  Y     +++   T+   + + +  
Sbjct: 901  LLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTA---IEDYKKTVQVYQRIKETG 957

Query: 62   -KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             +PD  TY+ LI    +  R +    ++ +M  LG++    TY ++I  +GK K  E+ E
Sbjct: 958  LEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAE 1017

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              F  ++ S G   D    ++M+    +SG+  K EK        G++  + T+++L  S
Sbjct: 1018 QLFEELL-SKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVS 1076

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            Y  +G   +   V+  ++      T + Y+ VI+ + ++       E   +MK  G++P+
Sbjct: 1077 YSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPD 1136

Query: 241  SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
               +   V A S +   ++V  +L+ +E  D+  D P 
Sbjct: 1137 HRIWTCFVRAASFSKEKIEVMLLLKALE--DIGFDLPI 1172


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 161/341 (47%), Gaps = 5/341 (1%)

Query: 2   VMLGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +++G C++ +  S   +F  M   G + +   YT L+     +  +DEA      MK   
Sbjct: 259 LIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKD-D 317

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +C P V TY++LIKS     R      ++ EM   GI+ +  TY  +ID      KFE+ 
Sbjct: 318 ECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKA 377

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 M+E G   P++ T N++I+ Y   G IE             +  + +T N L K
Sbjct: 378 RELLGQMLEKG-LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIK 436

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y ++ ++  M  V++ M +R   P VVTYN +I+   ++G+ +        M  RG+ P
Sbjct: 437 GYCKSNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  TY S++ +  K+  + +   +   +E   V  +   +  +I  Y +AG V++   + 
Sbjct: 496 DQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLML 555

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             M  ++C+P+++TF  +I    A G  + A  LE KM+ +
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKI 596



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 143/314 (45%), Gaps = 3/314 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML D + P++  Y  +V+ Y + G ++EA   ++ +   +   PD +TY+ LI    +  
Sbjct: 209 MLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVE-AGLDPDFFTYTSLIMGYCQRK 267

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             D   K+  EM   G   + V Y  +I G   A++ +E    F  M +   C P + T 
Sbjct: 268 DLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM-KDDECFPTVRTY 326

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
             +I +   S    +      E    G+K +I T  +L  S      ++K R ++  M +
Sbjct: 327 TVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE 386

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           +   P V+TYN +I  + K G IE   +  + M+ R + PN+ TY  L+  Y K+  + K
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHK 445

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +L ++    V+ D   +N +I    ++G+ +    L   M +R  VPD  T+ +MI 
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMID 505

Query: 320 AYNALGMTEAAQNL 333
           +       E A +L
Sbjct: 506 SLCKSKRVEEACDL 519



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 3/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  L   ML  GL P+V  Y AL++ Y + G++++A   +  M+S     P+  TY+ 
Sbjct: 375 EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMES-RKLSPNTRTYNE 433

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LIK   K +    +  +L +M    +    VTYN++IDG  ++  F+      S M + G
Sbjct: 434 LIKGYCKSNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG 492

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD +T  SMI +   S  +E+    ++     GV  ++     L   Y +AG  D+ 
Sbjct: 493 LV-PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M  +   P  +T+N +I      G +++     +KM   G++P   T   L+  
Sbjct: 552 HLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHR 611

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K G      S  +Q+ +S    D   +   I  Y + G +    ++   M+E    PD
Sbjct: 612 LLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPD 671

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
             T++++I+ Y  LG T  A ++  +M
Sbjct: 672 LFTYSSLIKGYGDLGQTNFAFDVLKRM 698



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 152/340 (44%), Gaps = 11/340 (3%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    E+A+     ++  GL P    YT+L+  Y Q   LD AF   N+M  +  C+
Sbjct: 227 GYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM-PLKGCR 285

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGY-GKAKKFEEM 119
            +   Y+ LI       R D    +  +M     EC  +  TY  +I    G  +K E +
Sbjct: 286 RNEVAYTHLIHGLCVARRIDEAMDLFVKMK--DDECFPTVRTYTVLIKSLCGSERKSEAL 343

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
             +    +E  G  P+I T   +I +  +    EK  +   +    G+  ++ T N L  
Sbjct: 344 --NLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALIN 401

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y + GM +    V++ M+ R   P   TYN +I+ + K+ ++ K      KM  R + P
Sbjct: 402 GYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLP 460

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +TY SL+    ++G       +L  + +  ++ D   +  +I +  ++  VE+  +LF
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLF 520

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +++++   P+ + +  +I  Y   G  + A  +  KM++
Sbjct: 521 DSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 134/304 (44%), Gaps = 27/304 (8%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K+ E+A  LF+ +   G+ P+V +YTAL+  Y ++G +DEA   +  M S  +C P
Sbjct: 507 LCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS-KNCLP 565

Query: 64  DVYTYSILIKS-CT--KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           +  T++ LI   C   K     L+E+   +M  +G++ +  T   +I    K   F+   
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEE---KMVKIGLQPTVSTDTILIHRLLKDGDFDHAY 622

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S F  M+ S G  PD  T  + I  Y   G +   E    +    GV  D+ T + L K 
Sbjct: 623 SRFQQML-SSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKG 681

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-----TFGKAGHIEK--------ME- 226
           YG  G  +    V+  M+     P+  T+  +I+      +GK    E         ME 
Sbjct: 682 YGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEF 741

Query: 227 ----EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF-FNC 281
               E  +KM    + PN+ +Y  L+    + G +   + +   ++ ++ I  +   FN 
Sbjct: 742 DTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNA 801

Query: 282 IISA 285
           ++S 
Sbjct: 802 LLSC 805



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 143/351 (40%), Gaps = 48/351 (13%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           K SV  Y +L++    +G +   F     M    D   D      L +   K  RF+L  
Sbjct: 120 KHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKY 179

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           K++       I C    YNT+++   +    +EM+  +  M+E   C P+I+T N M++ 
Sbjct: 180 KLI-------IGC----YNTLLNSLARFGLVDEMKQVYMEMLEDKVC-PNIYTYNKMVNG 227

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD----------------- 188
           Y   GN+E+  ++ ++    G+  D  T   L   Y +    D                 
Sbjct: 228 YCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRN 287

Query: 189 ---------------KMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
                          ++   MD    M+    FPTV TY ++I++   +    +     K
Sbjct: 288 EVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVK 347

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           +M+  G+KPN  TY  L+ +        K   +L Q+    ++ +   +N +I+ Y + G
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            +E   ++   M+ R   P+  T+  +I+ Y    + +A   L NKM+  K
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVL-NKMLERK 457



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 104/249 (41%), Gaps = 19/249 (7%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK------ 73
           M  +G+ P +  Y++L+  YG  G  + AF  +  M+  + C+P  +T+  LIK      
Sbjct: 663 MRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRD-TGCEPSQHTFLSLIKHLLEMK 721

Query: 74  ------------SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
                       + +    FD + ++L +M    +  +A +Y  +I G  +       E 
Sbjct: 722 YGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEK 781

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M  + G  P     N+++S         +  K  ++   +G    +++  +L    
Sbjct: 782 VFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGL 841

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G  ++  SV   + +  ++   + + I+I+  GK G +E   E F  M+  G K +S
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSS 901

Query: 242 ITYCSLVSA 250
            TY  L+  
Sbjct: 902 QTYSLLIEG 910


>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 426

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 151/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            G V     L   +K     PDNI     I      G  E A
Sbjct: 302 VGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RVGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSXVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 149/311 (47%), Gaps = 1/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  + + M   GLKPS   Y  L+  YG +G  DE+   ++ M +  + KP++ TY++
Sbjct: 159 EDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNM 218

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI++  K         ++ +M+  G++   VT+NTI   Y +  K  + E+    M +  
Sbjct: 219 LIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEM-QRN 277

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P+  T   +IS Y   G +++  ++      +G++ ++  LN L   +      D +
Sbjct: 278 SLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGV 337

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V+  M++    P V+TY+ ++  + +AG +EK +E +  M   G+KP++  Y  L   
Sbjct: 338 DEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKG 397

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y +A  + K + +L  +  S V  +   F  +IS +   G ++    +F  M E    P+
Sbjct: 398 YVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFGVSPN 457

Query: 311 NITFATMIQAY 321
             TF T+I  Y
Sbjct: 458 LKTFETLIWGY 468



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 158/321 (49%), Gaps = 1/321 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +L K  +P++A ++F+ ++  G +PS+  YT L++A           S ++ ++    
Sbjct: 79  MNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEE-KQ 137

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KPD   ++ LI +  +    +  +K++ +M   G++ SA TYNT+I GYG A K +E  
Sbjct: 138 MKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESM 197

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M   G   P++ T N +I A     NI +      +    G++ D+ T N +  +
Sbjct: 198 KLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATA 257

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y + G   +  +++  MQ+    P   T  I+I  + + G +++   +  +MK  GM+PN
Sbjct: 258 YAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPN 317

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            I   SLV+ +        VD +L+ +E   +  D   ++ I++A+ QAG +EK  E++ 
Sbjct: 318 LIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYN 377

Query: 301 TMKERHCVPDNITFATMIQAY 321
            M +    PD   ++ + + Y
Sbjct: 378 NMLKSGVKPDAHAYSILAKGY 398



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 130/280 (46%), Gaps = 37/280 (13%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G + S  TY T+++     K F+ + S  S +VE     PD    N++I+A+  SGN+E 
Sbjct: 102 GHQPSLATYTTLLNALTTQKYFKPIHSIVS-LVEEKQMKPDSIFFNALINAFAESGNMED 160

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVI 213
            +K   +    G+K    T N L K YG AG  D+   ++D M       P + TYN++I
Sbjct: 161 AKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNMLI 220

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
               K  +I +      KM   GM+P+ +T+ ++ +AY++ G   + ++++ +++ + + 
Sbjct: 221 RALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLK 280

Query: 274 LDTPFFNCIISAYGQAGDVE-------KMGEL---------------FLTMKERHCV--- 308
            +      IIS Y + G V+       +M +L               F+ M +R  V   
Sbjct: 281 PNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVDEV 340

Query: 309 ----------PDNITFATMIQAYNALGMTEAAQNLENKMI 338
                     PD IT++T++ A++  G  E  + + N M+
Sbjct: 341 LKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNML 380



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 4/124 (3%)

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           NI+I    K+G  ++    F+ +   G +P+  TY +L++A +       + SI+  VE 
Sbjct: 80  NILI----KSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEE 135

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
             +  D+ FFN +I+A+ ++G++E   ++   MKE    P   T+ T+I+ Y   G  + 
Sbjct: 136 KQMKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDE 195

Query: 330 AQNL 333
           +  L
Sbjct: 196 SMKL 199


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 156/331 (47%), Gaps = 4/331 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   +QA    +  +S+G +P    Y  LV+   + G    A   ++ M  +    
Sbjct: 282 GFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAM-LLGGLD 340

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+YTY+ LI    K    +   KIL +M       +AVTYN II    K  + +E  + 
Sbjct: 341 PDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEA-TE 399

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + ++ S G  PD+ T NS+I     S N +     + E    G + D  T N+L  S  
Sbjct: 400 IARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLC 459

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            +   ++  +++  M+       VV YN +I+ F K   IE+ EE F +M+ +G+  +S+
Sbjct: 460 SSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSV 519

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+    K+  +     ++ Q+    +  D   +N +++ + + GD++K  ++  TM
Sbjct: 520 TYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTM 579

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNL 333
               C PD +T+AT+I      G  + A  L
Sbjct: 580 TSSGCNPDIVTYATLISGLCKAGRVQVASRL 610



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 149/347 (42%), Gaps = 39/347 (11%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    + A  + + ML  GL P +  Y +L+S   + G ++EA   ++ M S  DC 
Sbjct: 317 GLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVS-RDCS 375

Query: 63  PDVYTYSILIKSCTKFHRFD-----------------------LIE------------KI 87
           P+  TY+ +I S  K +R D                       LI+             +
Sbjct: 376 PNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDL 435

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             EM   G      TYN +ID    ++K EE  +    M E  GC  ++   N++I  + 
Sbjct: 436 FEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEM-ELNGCARNVVIYNTLIDGFC 494

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            +  IE+ E+ ++E  L GV  D  T N L     ++   +    +MD M      P   
Sbjct: 495 KNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKF 554

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TYN ++  F K G I+K  +  + M   G  P+ +TY +L+S   KAG +     +LR +
Sbjct: 555 TYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSI 614

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           +   ++L    +N +I A  +     +   LF  M ++   PD IT+
Sbjct: 615 QMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITY 661



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 147/335 (43%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  Q   A L+ E M S GL P    +T ++  Y + G LD A      M     C  
Sbjct: 213 LCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYG-CPC 271

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
              T ++LI    K  R D     + E    G      TYNT+++G  K    +      
Sbjct: 272 TDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVV 331

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            AM+  GG  PDI+T NS+IS     G IE+  K  ++        +  T N +  S  +
Sbjct: 332 DAML-LGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCK 390

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               D+   +   +  +   P V T+N +I+    + + +   + F++MK +G +P+  T
Sbjct: 391 ENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFT 450

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+ +   +  + +  ++L+++E +    +   +N +I  + +   +E+  E+F  M+
Sbjct: 451 YNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEME 510

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +    D++T+ T+I         E A  L ++MI
Sbjct: 511 LQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMI 545



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 141/316 (44%), Gaps = 8/316 (2%)

Query: 25  LKPSVDVYTALVSAYGQSG---LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
           +KP    Y  L++    +    L++ A S++   +     + DV T++ILIK+  K H+ 
Sbjct: 164 IKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRR----IRHDVSTFNILIKALCKAHQV 219

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
                ++ EM   G+     T+ TI+ GY +    +        MVE G    D+ T+N 
Sbjct: 220 RPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDV-TVNV 278

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I+ +   G I++   +  E    G + D  T N L     + G       V+D M    
Sbjct: 279 LINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGG 338

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P + TYN +I    K G IE+  +   +M  R   PN++TY +++S+  K   + +  
Sbjct: 339 LDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEAT 398

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            I R + +  ++ D   FN +I     + + +   +LF  MK + C PD  T+  +I + 
Sbjct: 399 EIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSL 458

Query: 322 NALGMTEAAQNLENKM 337
            +    E A NL  +M
Sbjct: 459 CSSRKLEEALNLLKEM 474



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 139/334 (41%), Gaps = 1/334 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK    E    + E M   G +    ++   V +YG+  L DE    +  M+     KP
Sbjct: 107 LGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKP 166

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   Y++L+      ++  L+E   + M    I     T+N +I    KA +        
Sbjct: 167 DTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMM 226

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  S G  PD  T  +++  Y   GN++   +   +    G      T+N+L   + +
Sbjct: 227 EEM-PSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCK 285

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+  S +       F P   TYN ++    K GH +   E    M   G+ P+  T
Sbjct: 286 QGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYT 345

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL+S   K G I +   IL Q+ + D   +   +N IIS+  +   V++  E+   + 
Sbjct: 346 YNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLT 405

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +  +PD  TF ++IQ        ++A +L  +M
Sbjct: 406 SKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEM 439



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 121/297 (40%), Gaps = 43/297 (14%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P    Y  +++   K   F+ + ++L EM   G E     +   ++ YGK + ++E+   
Sbjct: 95  PSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGI 154

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M +     PD    N +++   ++  ++ +E  ++      ++ D+ T NIL K+  
Sbjct: 155 VKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALC 214

Query: 183 RAGMYDKMRSVMDFMQKRFFFP-----------------------------------TVV 207
           +A        +M+ M      P                                   T V
Sbjct: 215 KAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDV 274

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG----LIMKVDSI 263
           T N++I  F K G I++   + ++    G +P+  TY +LV+   K G     +  VD++
Sbjct: 275 TVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAM 334

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           L    + D+      +N +IS   + G++E+  ++   M  R C P+ +T+  +I +
Sbjct: 335 LLGGLDPDIYT----YNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISS 387



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
           F P+   Y  ++   GKAG  E M    ++MK  G + +   +   V +Y K  L  +V 
Sbjct: 93  FVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVV 152

Query: 262 SILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            I++ +E+   +  DT F+N +++    A  ++ +     +M  R    D  TF  +I+A
Sbjct: 153 GIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKA 212


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 152/320 (47%), Gaps = 2/320 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML  G  P+   Y  L+ +  Q+   +EA S    M +   C P+V++YSILI    +  
Sbjct: 43  MLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM-AAQGCSPNVFSYSILIAGLCRGQ 101

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           + D   ++L EM   G + + VTY +++ G  K  K +E    FS MV  G C PD    
Sbjct: 102 KVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRG-CPPDGVVY 160

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N +I  +   G++ +  + + E    G    + T N L   + R G + +++S+   M +
Sbjct: 161 NVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLR 220

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           +   P + T+N +++ F K G + +    F +M+  G  P+ ++Y +L+      G   +
Sbjct: 221 QGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHE 280

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +LR++  S V  D   +N +I  Y ++G ++   +LF  + +    PD  +++T+I 
Sbjct: 281 AQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIID 340

Query: 320 AYNALGMTEAAQNLENKMIA 339
                G   AA  +   MIA
Sbjct: 341 CLCRAGKVGAAFVVFKDMIA 360



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 142/317 (44%), Gaps = 6/317 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + ++ E+A  +F  M + G  P+V  Y+ L++   +   +DEA   +N+M      +P
Sbjct: 62  LCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGH-QP 120

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TY  L+    K  +      + + M Y G     V YN +IDG+ K     E    F
Sbjct: 121 NVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLF 180

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+E  GC P +FT NS++S +   G   +++  + +    G   +I T N L   + +
Sbjct: 181 EEMLEK-GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCK 239

Query: 184 AGMYDKMRSVMDFMQKRFFF--PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            G  D + +   F++ R     P VV+YN ++      G   + +   ++M   G+ P+ 
Sbjct: 240 MG--DMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDI 297

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           ++Y  L+  YSK+G +     +  ++  S +  D   ++ II    +AG V     +F  
Sbjct: 298 VSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKD 357

Query: 302 MKERHCVPDNITFATMI 318
           M      PD      ++
Sbjct: 358 MIANGSAPDAAVVIPLV 374



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 133/307 (43%), Gaps = 37/307 (12%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y  L+    +SG  D  + T NDM   + C P+ YTY  L++S  +              
Sbjct: 20  YNYLLEVLAKSGRCDHVYGTYNDMLG-AGCVPNTYTYGYLLRSLCQ-------------- 64

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
                                A++FEE  S F  M   G C P++F+ + +I+       
Sbjct: 65  ---------------------AQRFEEARSVFRGMAAQG-CSPNVFSYSILIAGLCRGQK 102

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++  +  NE    G + ++ T   L     + G   +   +   M  R   P  V YN+
Sbjct: 103 VDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ F K G + +    F++M  +G  P   TY SL+S +S+ G   +V S+ + +    
Sbjct: 163 LIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
            + +   FN ++  + + GD+ +   LFL M+   C PD +++ T+++   + G    AQ
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQ 282

Query: 332 NLENKMI 338
            L  +MI
Sbjct: 283 RLLREMI 289



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 137/311 (44%), Gaps = 4/311 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + ++A  LF  M+  G  P   VY  L+  + + G + EA+    +M    
Sbjct: 128 LLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLE-K 186

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C P V+TY+ L+   ++   F  ++ +  +M   G   +  T+N ++DG+ K     E 
Sbjct: 187 GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEA 246

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M  S GC PD+ + N+++    + G   + ++   E    GV  DI + NIL  
Sbjct: 247 HRLFLEM-RSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILID 305

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y ++G  D    +   + K    P   +Y+ +I+   +AG +      FK M   G  P
Sbjct: 306 GYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAP 365

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           ++     LV    +   + +   + + +   + +   P +N ++    +A   + + E+F
Sbjct: 366 DAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIF 425

Query: 300 LTMKERHCVPD 310
             + ER   PD
Sbjct: 426 HELTERGFSPD 436



 Score = 44.3 bits (103), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 26/132 (19%), Positives = 62/132 (46%)

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           ++YN ++E   K+G  + +   +  M   G  PN+ TY  L+ +  +A    +  S+ R 
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +       +   ++ +I+   +   V++  EL   M +    P+ +T+ +++     +G 
Sbjct: 78  MAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 327 TEAAQNLENKMI 338
            + A +L ++M+
Sbjct: 138 LKEAVDLFSRMV 149


>gi|302785283|ref|XP_002974413.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
 gi|300158011|gb|EFJ24635.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
          Length = 447

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 169/342 (49%), Gaps = 11/342 (3%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           ++M G CK  E  QA  L + M S+G++P+V ++T ++     +G + +A   ++  +  
Sbjct: 35  ILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQAL--LHFRRIG 92

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            DC P+VYTYSIL+ +  K  +      ++ EM   G   + VTYN +IDG+ K ++ +E
Sbjct: 93  EDCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDE 152

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL- 177
           +      M + G C  D+ T   ++  +  + +I++  +  N       K ++ T N L 
Sbjct: 153 VLMLLKEMSQRG-CRADVITYTMILDIFCKNNSIDEAYRLLNALE----KRNVVTYNSLF 207

Query: 178 -TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
              S        +  S+++ M +    P  V Y  V+    K   +++  +    M  +G
Sbjct: 208 TALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQG 267

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
            K + ++Y  LV A++ AG       +L ++  S  ILDT   N +I  + +AGD+ +  
Sbjct: 268 CKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAH 327

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +LF +M +R  +P N+T+ T+I A+      + A  L ++MI
Sbjct: 328 QLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMI 369



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 108/258 (41%), Gaps = 41/258 (15%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L E M+ +G +P+   Y  ++    ++  LDEA+  +  M S   CK D  +Y IL
Sbjct: 220 EALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYS-QGCKTDDVSYKIL 278

Query: 72  IKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           + +     R +D +E +L  M   G      T N +I  + KA    E    F +M + G
Sbjct: 279 VVAFASAGRTYDSLE-LLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMCQRG 337

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P   T N++I A+  +   +   K  ++     ++AD                    
Sbjct: 338 SI-PSNVTYNTLIGAFCKAQQPDTAVKLLHQM----IQAD-------------------- 372

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL-VS 249
                      F P V+TYN +I++F +    E+    F+ M   G  P+ ++Y +L +S
Sbjct: 373 -----------FKPNVITYNSIIKSFCREQREEEARGIFQMMVDSGCFPDRVSYTTLKIS 421

Query: 250 AYSKAGLIMKV-DSILRQ 266
               A    KV D+ LR+
Sbjct: 422 KNDAAIYDQKVHDTCLRK 439



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 69/140 (49%), Gaps = 7/140 (5%)

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V+Y I+++ F KAG  ++  E   +MK  G++PN + + +++     AG + +     R+
Sbjct: 31  VSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRR 90

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +   D   +   ++ ++ A  ++G   +   L   M ++ C P+ +T+  +I  +  L  
Sbjct: 91  I-GEDCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKL-- 147

Query: 327 TEAAQNLENKMIAMKENSGK 346
               + L+  ++ +KE S +
Sbjct: 148 ----ERLDEVLMLLKEMSQR 163


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 159/317 (50%), Gaps = 4/317 (1%)

Query: 26  KPSVDVYTALVS--AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           +   DVY+  ++  A+ ++G + + F  +  M+++    P+V+ Y+ILI++C +    D 
Sbjct: 102 RTQFDVYSFWITIKAFCENGNVSKGFELLAQMETMG-VSPNVFIYTILIEACCRNGDIDQ 160

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            + + + M  LG+  +   Y  +I+G+ K K +++        ++  G  P+++T NS+I
Sbjct: 161 AKVMFSRMDDLGLAANQYIYTIMINGFFK-KGYKKDGFELYQKMKLVGVLPNLYTYNSLI 219

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           + Y   G +    K ++E +  GV  +  T NIL     R G   K   +++ M++    
Sbjct: 220 TEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHIN 279

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT  T+N++++     G ++K   Y +K+K  G+ P  +TY  L+S +SK G    V  +
Sbjct: 280 PTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSEL 339

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           +R++E+  +      +  +++ + ++ D+EK  E+F  MK    VPD  T+  +I     
Sbjct: 340 VREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCI 399

Query: 324 LGMTEAAQNLENKMIAM 340
            G    A  L   M+ M
Sbjct: 400 KGNMVEASKLYKSMVEM 416



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 153/327 (46%), Gaps = 2/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA ++F  M   GL  +  +YT +++ + + G   + F     MK V    P++YTY+ 
Sbjct: 159 DQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVG-VLPNLYTYNS 217

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  +  L  K+  E+S  G+ C+AVTYN +I G  +  +  + E     M +  
Sbjct: 218 LITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERM-KRA 276

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
             +P   T N ++    N+G ++K   +  +  L+G+   + T NIL   + + G    +
Sbjct: 277 HINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVV 336

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M+ R   P+ VTY I++ TF ++  IEK  E F  MK  G+ P+  TY  L+  
Sbjct: 337 SELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHG 396

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G +++   + + +    +  +   +N +I+ Y +  +  K  +    M +    P+
Sbjct: 397 LCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPN 456

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
             ++ + IQ     G +  A+ L  +M
Sbjct: 457 VASYISTIQILCKDGKSIEAKRLLKEM 483



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 4/237 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  Q  +A  L E M    + P+   +  L+     +G LD+A S +  +K +  C 
Sbjct: 256 GLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLC- 314

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P + TY+ILI   +K     ++ +++ EM   GI  S VTY  +++ + ++   E+    
Sbjct: 315 PTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEM 374

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  G  PD  T   +I      GN+ +  K Y     M ++ +    N +   Y 
Sbjct: 375 FHLM-KRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYC 433

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +     K    ++ M K    P V +Y   I+   K G   + +   K+M   G+KP
Sbjct: 434 KECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKP 490


>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           montevidensis]
          Length = 418

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 150/333 (45%), Gaps = 39/333 (11%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKS---------------------------------- 57
           Y+ L++ +G+ GL D A S +  M+                                   
Sbjct: 2   YSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRLK 61

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T++  Y + KKF 
Sbjct: 62  RSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKKFL 121

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ ++ + N L
Sbjct: 122 EALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTL 180

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     ++M+ RG+
Sbjct: 181 LRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGI 240

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +PNSITY +++S + K G + +   + +++ +S   +D   F  +I AY +AG V     
Sbjct: 241 EPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKR 300

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           L   +K     PDNI   T I      G  E A
Sbjct: 301 LLHELKR----PDNIPRDTAIHILAGAGRIEEA 329



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+   
Sbjct: 56  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA-AGVMPNTTSYSTLLTMY 114

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 115 VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 173

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 174 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 230

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 231 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYE 290

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 291 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 350

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 351 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 406



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 126/271 (46%), Gaps = 1/271 (0%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S FS +
Sbjct: 1   TYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYSKAISIFSRL 60

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
             SG   PD+   N+MI+ +G +    +      E    GV  +  + + L   Y     
Sbjct: 61  KRSGFT-PDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKK 119

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN ++Y +
Sbjct: 120 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 179

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M+ R 
Sbjct: 180 LLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG 239

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             P++IT++T+I  +  +G  + A  L  K+
Sbjct: 240 IEPNSITYSTIISIWGKVGKLDRAAMLFQKL 270


>gi|410110139|gb|AFV61149.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           salviifolia]
          Length = 378

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 6   KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 64

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 65  LSMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 123

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 124 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 183

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 184 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 243

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 244 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 283



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 127/251 (50%), Gaps = 1/251 (0%)

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           I + +   G     V YN +I+ +GKAK F E  S  S M ++ G  P+  + ++++S Y
Sbjct: 10  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEM-KTAGVMPNTTSYSTLLSMY 68

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +    +    ++E   +    D+ T NI+   YG+ GM  +   +   M+K    P V
Sbjct: 69  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 128

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K ++++++
Sbjct: 129 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 188

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+
Sbjct: 189 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGL 248

Query: 327 TEAAQNLENKM 337
              A+ L +++
Sbjct: 249 VAHAKRLLHEL 259



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 10  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLSMY 68

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 69  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 127

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 128 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 184

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 185 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 244

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 245 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFER 304

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 305 MIHLLSKYKKYSNVXEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 360



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 1/217 (0%)

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   
Sbjct: 9   SIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLSM 67

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y     + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN
Sbjct: 68  YVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPN 127

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ++Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L  
Sbjct: 128 VVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQ 187

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M+ R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 188 EMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 224



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 70/135 (51%)

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 4   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 63

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+S Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 64  LLSMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 123

Query: 307 CVPDNITFATMIQAY 321
             P+ +++ T+++ Y
Sbjct: 124 IEPNVVSYNTLLRVY 138


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 171/339 (50%), Gaps = 13/339 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ ++  +A LL +      L P    Y AL++A  ++  L++A + I+ M+   D  P
Sbjct: 164 LGRSEKLYEAFLLSQ---QQALSPLT--YNALINACARNNDLEKAINLISRMRQ--DGYP 216

Query: 64  -DVYTYSILIKSCTKFHRFD--LIEKILAEMSYLGIECSAVTYNTIIDGYGKA-KKFEEM 119
            D   YS++I+S  + +R D  +++K+ +E+    +E      N II G+ KA    + M
Sbjct: 217 SDFVNYSLIIQSLVRSNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVGFAKAGDPNKAM 276

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E  F  MV++ G  P   TL ++ISA G+SG I + E  + E    G+K   +  N L K
Sbjct: 277 E--FLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLK 334

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y +AGM      ++  M++    P   TY+++I+ +  AG  E      K+M+   + P
Sbjct: 335 GYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMP 394

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           NS  +  ++++Y   G   K   +L++++NS V  D  F+N +I  +G+   ++   + F
Sbjct: 395 NSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTF 454

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M      PD +T+ T+I  +    + E A+ L  +M+
Sbjct: 455 DKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMM 493



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 156/320 (48%), Gaps = 6/320 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG   +  +A  +FE M  +GLKP    Y  L+  Y ++G+L +A   +++M+  S   P
Sbjct: 301 LGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMER-SGVSP 359

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TYS+LI + +   R++    +L EM    I  ++  ++ I+  Y   +   E + SF
Sbjct: 360 DECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASY---RDRGEWQKSF 416

Query: 124 SAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             + E  + G  PD    N MI  +G    ++     +++    G++ D  T N L   +
Sbjct: 417 QVLKEMKNSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCH 476

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            +A ++++   + + M ++ F P V T+NI+I +FG+    + ++     M+  G+ PN 
Sbjct: 477 CKAELHERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNV 536

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L+  Y K+G        L  ++++ +   +  +N +I+AY Q G  E+    F  
Sbjct: 537 VTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRL 596

Query: 302 MKERHCVPDNITFATMIQAY 321
           M+     P  +   ++I A+
Sbjct: 597 MRADSLKPSLLALNSLINAF 616



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 155/314 (49%), Gaps = 45/314 (14%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A ++ + M ++ + P+  V++ ++++Y   G   ++F  + +MK+ S  +PD + Y++
Sbjct: 378 ESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKN-SGVRPDRHFYNV 436

Query: 71  LIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +I +  KF    H  D  +K+L+E    GI+   VT+NT+ID + KA+  E  E  F  M
Sbjct: 437 MIDTFGKFSCLDHAMDTFDKMLSE----GIQPDTVTWNTLIDCHCKAELHERAEELFEEM 492

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           +E G   P + T N MI+++G      + E+W                            
Sbjct: 493 MEKG-FSPCVTTFNIMINSFG------EQERW---------------------------- 517

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D ++++M  M+     P VVTY  +I+ +GK+G      E  + MK  G+KP+S  Y +
Sbjct: 518 -DDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNA 576

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++AY++ GL  +  +  R +    +       N +I+A+G+     +   +   MKE  
Sbjct: 577 LINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKEND 636

Query: 307 CVPDNITFATMIQA 320
             PD +T+ T+++A
Sbjct: 637 LKPDVVTYTTLMKA 650


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 150/308 (48%), Gaps = 2/308 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A L+   M   G+ P    Y+ L+ AY  +G  + A   + +M++  D +P+ + +S L+
Sbjct: 360 AELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMET-GDVQPNSFVFSRLL 418

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                   +    ++L EM  +G++     YN +ID +GK    +   ++F  M+ S G 
Sbjct: 419 AGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRML-SEGI 477

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PD  T N++I  +   G     E+ +      G      T NI+  SYG    +D M+ 
Sbjct: 478 EPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKR 537

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  M+ +   P VVT+  +++ +GK+G      E  ++MK  G+KP+S  Y +L++AY+
Sbjct: 538 LLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYA 597

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           + GL  +  +  R + +  +       N +I+A+G+     +   +   MKE    PD +
Sbjct: 598 QRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVV 657

Query: 313 TFATMIQA 320
           T+ T+++A
Sbjct: 658 TYTTLMKA 665



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 148/312 (47%), Gaps = 6/312 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LFE +   G+KP    Y AL+  Y ++G L +A   +++M+      PD +TYS+L
Sbjct: 324 EAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEK-RGVSPDEHTYSLL 382

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--S 129
           I +     R++    +L EM    ++ ++  ++ ++ GY   +   E + +F  + E  S
Sbjct: 383 IDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGY---RDRGEWQKTFQVLKEMKS 439

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G  PD    N +I  +G    ++     ++     G++ D  T N L   + + G +  
Sbjct: 440 IGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIV 499

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              + + M++R   P   TYNI+I ++G     + M+    KMK +G+ PN +T+ +LV 
Sbjct: 500 AEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVD 559

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            Y K+G        L ++++  +   +  +N +I+AY Q G  E+    F  M      P
Sbjct: 560 VYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKP 619

Query: 310 DNITFATMIQAY 321
             +   ++I A+
Sbjct: 620 SLLALNSLINAF 631



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 145/329 (44%), Gaps = 2/329 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
             K   P +A  L  +  + GL        +++SA   SG   EA +   +++  S  KP
Sbjct: 281 FAKSGDPSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEAEALFEELRQ-SGIKP 339

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
               Y+ L+K   K       E +++EM   G+     TY+ +ID Y  A ++E      
Sbjct: 340 RTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVL 399

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E+G   P+ F  + +++ Y + G  +K  +   E   +GVK D Q  N++  ++G+
Sbjct: 400 KEM-ETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGK 458

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               D   +  D M      P  VT+N +I+   K G     EE F+ M+ RG  P + T
Sbjct: 459 FNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATT 518

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  ++++Y        +  +L ++++  ++ +      ++  YG++G      E    MK
Sbjct: 519 YNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMK 578

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQN 332
                P +  +  +I AY   G++E A N
Sbjct: 579 SVGLKPSSTMYNALINAYAQRGLSEQAVN 607



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 145/301 (48%), Gaps = 2/301 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A ++ + M +  ++P+  V++ L++ Y   G   + F  + +MKS+   KPD   Y++
Sbjct: 393 ESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIG-VKPDRQFYNV 451

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I +  KF+  D        M   GIE   VT+NT+ID + K  +    E  F AM E  
Sbjct: 452 VIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAM-ERR 510

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC P   T N MI++YG+    + M++   +    G+  ++ T   L   YG++G ++  
Sbjct: 511 GCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDA 570

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              ++ M+     P+   YN +I  + + G  E+    F+ M   G+KP+ +   SL++A
Sbjct: 571 IECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINA 630

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + +     +  ++L+ ++ + V  D   +  ++ A  +    +K+  ++  M    C PD
Sbjct: 631 FGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPGVYEEMIMSGCKPD 690

Query: 311 N 311
            
Sbjct: 691 R 691



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--LIEKIL 88
            Y AL+ A  ++  +++A + I+ M+     + D   YS++I+S T+ ++ D  +++++ 
Sbjct: 201 TYNALIGACARNNDIEKALNLISRMRQ-DGYQSDFVNYSLVIQSLTRCNKIDSVMLQRLY 259

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            E+    +E      N II G+ K+            M ++ G      TL S+ISA  N
Sbjct: 260 KEIERDKLELDVQLVNDIIMGFAKSGD-PSRALQLLGMAQATGLSAKTATLVSIISALAN 318

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           SG   + E  + E    G+K   +  N L K Y + G       ++  M+KR   P   T
Sbjct: 319 SGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHT 378

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y+++I+ +  AG  E      K+M+   ++PNS  +  L++ Y   G   K   +L++++
Sbjct: 379 YSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMK 438

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +  V  D  F+N +I  +G+   ++     F  M      PD +T+ T+I  +
Sbjct: 439 SIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 491



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 121/253 (47%), Gaps = 14/253 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG---LLDEAFSTINDMKSVSD 60
            GK    + A   F+ MLS+G++P    +  L+  + + G   + +E F  +        
Sbjct: 456 FGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER----RG 511

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P   TY+I+I S     R+D ++++L +M   GI  + VT+ T++D YGK+ +F +  
Sbjct: 512 CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAI 571

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNIL 177
                M +S G  P     N++I+AY   G  E+     N F +M   G+K  +  LN L
Sbjct: 572 ECLEEM-KSVGLKPSSTMYNALINAYAQRGLSEQA---VNAFRVMTSDGLKPSLLALNSL 627

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             ++G      +  +V+ +M++    P VVTY  +++   +    +K+   +++M   G 
Sbjct: 628 INAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPGVYEEMIMSGC 687

Query: 238 KPNSITYCSLVSA 250
           KP+      L SA
Sbjct: 688 KPDRKARSMLRSA 700


>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
 gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
          Length = 467

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 161/343 (46%), Gaps = 4/343 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  +A  +F+ M   GL P+   YTAL+  Y   G  ++ F+   +M+     +
Sbjct: 47  GCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRR-GGVE 105

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++YTY+ LI    +   F+    +  EM   GI  + V+YNT+I G  +  K  +  + 
Sbjct: 106 PNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDA-AK 164

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+ + G  P I T N ++  YG +G +     ++N+    G +    T N+L   + 
Sbjct: 165 LLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFC 224

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           RA    +    +  M++R   PT VTY I+I++F +  H+ K  E    M+  G++ ++ 
Sbjct: 225 RARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAH 284

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  LV A    G +     + + +    V      ++ +I  YG+ G   K  +L + M
Sbjct: 285 TYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEM 344

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           +++  +P++ ++   I+        + A+ L + M  ++  +G
Sbjct: 345 RQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMETIRSFAG 387



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 148/323 (45%), Gaps = 13/323 (4%)

Query: 19  VMLSDGLKPS-----VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 73
            ML+ G K       V   TALV+   + G + EA    ++M  +    P+  TY+ L+ 
Sbjct: 23  AMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLG-LAPNEVTYTALMH 81

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
                 + +    +  EM   G+E +  TYN +I  + +  +FE   S F  M   G   
Sbjct: 82  GYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVR 141

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
            ++ + N++I+     G +    K  +     G +  I T N+L   YG+AG   KM + 
Sbjct: 142 -NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAG---KMSNA 197

Query: 194 MDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + F   M+   F P+ VTYN++I  F +A  + +       MK RG++P  +TY  L+ +
Sbjct: 198 LPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDS 257

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           +++   + K   IL  +E + + +D   +  ++ A    G+++   +LF +M E+   P 
Sbjct: 258 FARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPS 317

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
           N+ +  MI  Y   G +  A  L
Sbjct: 318 NVIYDMMIYGYGREGSSYKALKL 340



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 70/170 (41%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           D+     L     + G   + R V D M      P  VTY  ++  +   G  EK    F
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M+  G++PN  TY  L+  + + G   +  S+  ++    ++ +   +N +I+   + 
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           G +    +L   M+     P  ITF  ++  Y   G    A    N+M A
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKA 206


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 144/298 (48%), Gaps = 10/298 (3%)

Query: 5   GKCKQPEQASL-LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           G C++    ++ L + ML   L P +  Y +L++   ++G LD A+  ++ MK      P
Sbjct: 302 GLCRKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKE-RGLVP 360

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY   I    K +R +   ++   ++  G+  + + Y+ +IDGY K  K +E    F
Sbjct: 361 DQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLF 420

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ S  C P+ +T N++I    ++GN+++    +++   MG+K  + T NIL     +
Sbjct: 421 EKML-SKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLK 479

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G +D     +  M      P   TYN  IE +  AG +++ E+   +MK  G+ P+  T
Sbjct: 480 QGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFT 539

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD----VEKMGE 297
           Y SL+ AY K GL      +L+ + ++D     P  +  +S   Q  D    VEK GE
Sbjct: 540 YTSLIKAYGKLGLTYSAFDVLKSMFDADC---EPSHHTFLSLIKQLFDKRYVVEKSGE 594



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 139/301 (46%), Gaps = 7/301 (2%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTK-FHRFDLIEKILA 89
           Y  L+    ++G +DEA S    MK    C P+VYTY+ LIK  C K  H+      +L 
Sbjct: 261 YNQLIHGLCEAGRIDEAVSLFVRMKDDC-CYPNVYTYTALIKGLCRKNVHK---AMGLLD 316

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           EM    +    +TYN++I G  +A   +      S M E G   PD  T    I     S
Sbjct: 317 EMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLV-PDQRTYGCFIDFLCKS 375

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
             +E+  + ++     GV A++   ++L   Y + G  D+   + + M  +   P   T+
Sbjct: 376 NRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTF 435

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N +I     AG++++    F +M   G+KP   T+  L+    K G        L+++ +
Sbjct: 436 NALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMS 495

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
           S        +N  I  Y  AG V++  ++ + MKE    PD+ T+ ++I+AY  LG+T +
Sbjct: 496 SGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYS 555

Query: 330 A 330
           A
Sbjct: 556 A 556



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 144/320 (45%), Gaps = 11/320 (3%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHR 80
           D  K S+  Y  L++   + GL+DE      +M  + VS    D+YT++++I    K   
Sbjct: 151 DITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVS---MDIYTFNLMINVYCKMGF 207

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
               ++ + +M   G+     T  + I GY ++K   +++S+F    E    + +  + N
Sbjct: 208 VKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSK---DVDSAFRVFEEMP--NRNEVSYN 262

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I     +G I++    +          ++ T   L K   R  ++  M  ++D M +R
Sbjct: 263 QLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVHKAM-GLLDEMLER 321

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P ++TYN +I    +AGH++        MK RG+ P+  TY   +    K+  + + 
Sbjct: 322 NLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEA 381

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +   +    V  +   ++ +I  Y + G V++ G LF  M  ++C P+  TF  +I  
Sbjct: 382 RRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHG 441

Query: 321 YNALGMTEAAQNLENKMIAM 340
             + G  + A +L ++M+ M
Sbjct: 442 LCSAGNLKEALSLFDQMVKM 461



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 129/305 (42%), Gaps = 34/305 (11%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + ++A  LFE MLS    P+   + AL+     +G L EA S  + M  +   K
Sbjct: 406 GYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMG-LK 464

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P VYT++ILI    K   FD   K L +M   G +  A TYN  I+ Y  A K +E E  
Sbjct: 465 PTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDM 524

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E G   PD FT  S+I AYG      K+   Y+ F+++    D            
Sbjct: 525 MVQMKEEG-VPPDDFTYTSLIKAYG------KLGLTYSAFDVLKSMFDADC--------- 568

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNI-VIETFG--KAGHIEKMEEY------FKKMK 233
               +  +  +     KR+         +  +  FG     ++ KM E+      F++M+
Sbjct: 569 EPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEME 628

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA------YG 287
             G  P+S  Y  L+S   K   +     +L Q++   +      FN +IS       YG
Sbjct: 629 KHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYG 688

Query: 288 QAGDV 292
           +A ++
Sbjct: 689 EAANI 693



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 8/260 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +   M  +G+ P    YT+L+ AYG+ GL   AF  +  M   +DC+P  +T+  
Sbjct: 519 QEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFD-ADCEPSHHTFLS 577

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LIK    F +  ++EK        G+E  +   +       K  +F+ +   F  M E  
Sbjct: 578 LIKQL--FDKRYVVEK----SGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEM-EKH 630

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PD      +IS      N+    K  ++    G+       N +     +   Y + 
Sbjct: 631 GCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEA 690

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            ++++ M      P +     +I    + G  E+    FKK++  G   + I +  L+  
Sbjct: 691 ANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDG 750

Query: 251 YSKAGLIMKVDSILRQVENS 270
             K GL+ +   +  ++E +
Sbjct: 751 MLKQGLVEEFSQLFEEMEKN 770



 Score = 43.1 bits (100), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 1/154 (0%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C PD   Y  LI    K     +  K+L +M   GI  S + +N +I    K +K+ E  
Sbjct: 632 CTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAA 691

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +    M+ SG   P +    ++I      G  E+    + +    G   D     IL   
Sbjct: 692 NIVEDMICSGH-SPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDG 750

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             + G+ ++   + + M+K     +  TY+I+ +
Sbjct: 751 MLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQ 784


>gi|410110063|gb|AFV61111.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
           barbata]
          Length = 364

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 5   KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTL 63

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 64  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 242

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 243 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 282



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 167/361 (46%), Gaps = 41/361 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  +   G  P +  Y A+++ +G++ L  EA S I++MK  +   P+  +YS L
Sbjct: 5   KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKX-AGVMPNTTSYSTL 63

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G
Sbjct: 64  LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMG 122

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYD 188
             P++ + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++
Sbjct: 123 IEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 179

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++
Sbjct: 180 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 239

Query: 249 SAYSKAGLIMKVDSILRQVENSDVI-LDTPF---------------FNCIISAYGQAGDV 292
            AY +AGL+     +L +++  D I  DT                 F   I A G+  D+
Sbjct: 240 VAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDA-GEVKDI 298

Query: 293 ---EKM-------------GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
              E+M              E+F  M+     PD+   A ++ AY  L   + A ++  +
Sbjct: 299 TVFERMIHLLSKYKKYSNVXEVFDKMRGLGYFPDSNVIAVVLNAYGKLXEFDKANDVYME 358

Query: 337 M 337
           M
Sbjct: 359 M 359



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 70/135 (51%)

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYST 62

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++ Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 307 CVPDNITFATMIQAY 321
             P+ +++ T+++ Y
Sbjct: 123 IEPNVVSYNTLLRVY 137



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 107/262 (40%), Gaps = 31/262 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 103 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 161

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K       F+
Sbjct: 162 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 221

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        F  M+   E  G              PD    ++ I     +G IE+
Sbjct: 222 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEE 281

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +     +   Y  +  V D M+   +FP      +V+ 
Sbjct: 282 ATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVXEVFDKMRGLGYFPDSNVIAVVLN 341

Query: 215 TFGKAGHIEKMEEYFKKMKHRG 236
            +GK    +K  + + +M+  G
Sbjct: 342 AYGKLXEFDKANDVYMEMQEVG 363


>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 426

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 153/341 (44%), Gaps = 39/341 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-------------------------- 57
            L P    Y+ L++ +G+ GL D A S +  M+                           
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKA 63

Query: 58  --------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                    S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T++  
Sbjct: 64  ISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTM 123

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG++ 
Sbjct: 124 YVENKKFLEALSIFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEP 182

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     
Sbjct: 183 NVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLI 242

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M++RG++PNSITY +++S + K G + +   + +++ +  V +D   +  +I AY +A
Sbjct: 243 QEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAYERA 302

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G V     L   +K     PDNI     I      G  E A
Sbjct: 303 GLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   + +  S 
Sbjct: 7   PDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDYXKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   Y 
Sbjct: 67  FSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  S+   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN +
Sbjct: 126 ENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 246 QNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     I AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 416



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  XKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 150/329 (45%), Gaps = 2/329 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  M  D   P+V  YT L+ A   SG   EA +  N+MK    C+P+V+TY++L
Sbjct: 282 EALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKE-KGCEPNVHTYTVL 340

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K ++ D   K+L+EMS  G+  S VTYN +IDGY K    ++       M ES  
Sbjct: 341 IDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLM-ESNS 399

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  T N +I        + K     N+     +   + T N L     +    +   
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAY 459

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++  M +    P   TY++ I+T  K G +E+    F  +K +G+K N + Y +L+  Y
Sbjct: 460 RLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGY 519

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K G I    S+L ++ N   + ++  +N +I    +   +++   L   M      P  
Sbjct: 520 CKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTV 579

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAM 340
           +T+  +I      G  + A  + N M+++
Sbjct: 580 VTYTILIGEMLKDGAFDHALKVFNHMVSL 608



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 147/328 (44%), Gaps = 4/328 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   ++A  +   M   GL PSV  Y AL+  Y + G++D+AF  ++ M+S S C 
Sbjct: 343 GLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS-CG 401

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+  TY+ LI    K  +      +L +M    +  S +TYN++I G  K    E     
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRL 461

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            S M E+G   PD +T +  I      G +E+    ++     GVKA+      L   Y 
Sbjct: 462 LSLMNENGLV-PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYC 520

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D   S+++ M      P   TYN++IE   K   +++      KM   G+KP  +
Sbjct: 521 KVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVV 580

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+    K G       +   + +     D   +   + AY   G +E++ ++   M
Sbjct: 581 TYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKM 640

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
            E   +PD +T+  +I  Y  LG+T  A
Sbjct: 641 NEEGILPDLVTYTVLIDGYARLGLTHRA 668



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 142/327 (43%), Gaps = 2/327 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A L    ++  GL P    YT+L+  + ++  +D A+     M     C+ +  +Y+ L
Sbjct: 212 EAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQ-KGCQRNEVSYTNL 270

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    +  R +   K+ A+M+      +  TY  +I     + +  E  + F+ M E G 
Sbjct: 271 IHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKG- 329

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P++ T   +I        +++  K  +E +  G+   + T N L   Y + GM D   
Sbjct: 330 CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAF 389

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++D M+     P   TYN +I    K   + K      KM  R + P+ ITY SL+   
Sbjct: 390 EILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQ 449

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K   +     +L  +  + ++ D   ++  I    + G VE+ G LF ++K +    + 
Sbjct: 450 CKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANE 509

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           + +  +I  Y  +G  + A +L  +M+
Sbjct: 510 VIYTALIDGYCKVGKIDVAYSLLERML 536



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 121/266 (45%), Gaps = 4/266 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK+ +  +A  L   ML   L PS+  Y +L+    +   L+ A+  ++ M   +
Sbjct: 410 LICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNE-N 468

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD +TYS+ I +  K  R +    +   +   G++ + V Y  +IDGY K  K +  
Sbjct: 469 GLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVA 528

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            S    M+ +  C P+ +T N +I        +++      +   MGVK  + T  IL  
Sbjct: 529 YSLLERML-NDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIG 587

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G +D    V + M    + P V TY   +  +   G +E++++   KM   G+ P
Sbjct: 588 EMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILP 647

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILR 265
           + +TY  L+  Y++ GL  +    L+
Sbjct: 648 DLVTYTVLIDGYARLGLTHRAFDFLK 673



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 148/355 (41%), Gaps = 24/355 (6%)

Query: 10  PEQASLLFE-VMLSDGLKPSVDVYTALVSAYGQSGLLDEA----FSTINDMKSVSDC--- 61
           P+ A   F  + L  G K +V  Y+++++   ++ LL  A     S I    S+ D    
Sbjct: 81  PQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFV 140

Query: 62  ---------------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
                          KP +  Y+ ++ S +KF   D ++ +  E+    I  +  T+N +
Sbjct: 141 LEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAM 200

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           ++GY K     E E   S +V++G  HPD FT  S+I  +  +  ++   + +      G
Sbjct: 201 VNGYCKIGNVVEAELYASKIVQAG-LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG 259

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
            + +  +   L      AG  ++   +   M +    PTV TY ++I     +G   +  
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL 319

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
             F +MK +G +PN  TY  L+    K   + +   +L ++    +I     +N +I  Y
Sbjct: 320 NLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGY 379

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            + G ++   E+   M+   C P+  T+  +I           A  L NKM+  K
Sbjct: 380 CKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK 434



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 142/336 (42%), Gaps = 22/336 (6%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+ +  +AS L   ML+ G+KP+V  YT L+    + G  D A    N M S+   +
Sbjct: 553 GLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGY-Q 611

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TY+  + +       + ++ ++A+M+  GI    VTY  +IDGY +          
Sbjct: 612 PDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDF 671

Query: 123 FSAMVESGGCHPDIFTLNSMI------------------SAYGNSGNIEKMEKWYNEFNL 164
              MV++G C P ++ ++ +I                   +  N+   E   K + +   
Sbjct: 672 LKCMVDTG-CKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVE 730

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G   D+     L   + +    ++ + ++  M++R   P+   YN +++   K G   +
Sbjct: 731 HGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAE 790

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
                  M   G+ P   +Y  LV      G   K  ++   + +     D   +  +I 
Sbjct: 791 AVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLID 850

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
              +   V++  EL   M+E+ C P+ +T++ +I+ 
Sbjct: 851 GLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEG 886



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 105/254 (41%), Gaps = 22/254 (8%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+ P +  YT L+  Y + GL   AF  +  M   + CKP +Y  SILIK+ +  +
Sbjct: 640 MNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVD-TGCKPSLYIVSILIKNLSHEN 698

Query: 80  R------------------FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           R                  +++  K+  +M   G       Y  +I G+ + ++ EE + 
Sbjct: 699 RMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQG 758

Query: 122 SFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
               M E G     DI+  NS++      G   +  +  +     G+   +++  +L   
Sbjct: 759 LVHHMKERGMSPSEDIY--NSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCG 816

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               G  +K ++V   +    +    V + ++I+   K   +++  E    M+ +G +PN
Sbjct: 817 LYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPN 876

Query: 241 SITYCSLVSAYSKA 254
            +TY  L+    + 
Sbjct: 877 PLTYSLLIEGLERT 890


>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 829

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 160/346 (46%), Gaps = 7/346 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYS 69
           ++A  LF  M   GL P++  Y  ++  YG+ G   D     +++M+S    + D +T S
Sbjct: 232 KRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRS-KGLELDEFTCS 290

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            +I +C +    D   K LAE+ + G +   VTYN+++  +GKA  + E  S    M E 
Sbjct: 291 TVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEM-ED 349

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
             C PD  T N + + Y  +G +++     +     GV  +  T   +  +YG+AG  D 
Sbjct: 350 NNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDD 409

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              +   M+     P V TYN V+   GK    E + +   +MK  G  PN  T+ ++++
Sbjct: 410 ALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLA 469

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
             S+ G    V+ +LR+++N     D   FN +ISAY + G      +++  M +    P
Sbjct: 470 VCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTP 529

Query: 310 DNITFATMIQAYNALGMTEAA----QNLENKMIAMKENSGKKLIQC 351
              T+  ++ A    G  +AA    Q++  K     ENS   L+ C
Sbjct: 530 CVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHC 575



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 147/324 (45%), Gaps = 3/324 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+  Q   AS LF+++  +     V  YT ++ +Y ++G    A      MK +    
Sbjct: 189 ILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIG-LD 247

Query: 63  PDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY++++    K  R +D I ++L EM   G+E    T +T+I   G+    +E   
Sbjct: 248 PTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEAR- 306

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F A ++  G  P   T NSM+  +G +G   +      E        D  T N L  +Y
Sbjct: 307 KFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATY 366

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            RAG  D+  +V+D M  +   P  +TY  VI+ +GKAG  +     F  MK  G  PN 
Sbjct: 367 VRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNV 426

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY S+++   K      V  +L +++ +    +   +N +++   + G    + ++   
Sbjct: 427 YTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLRE 486

Query: 302 MKERHCVPDNITFATMIQAYNALG 325
           MK     PD  TF T+I AY   G
Sbjct: 487 MKNCGFEPDKDTFNTLISAYARCG 510



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/420 (21%), Positives = 180/420 (42%), Gaps = 74/420 (17%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  + + A  LF +M   G  P+V  Y ++++  G+    ++    + +MK ++ C P+
Sbjct: 402 GKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMK-LNGCAPN 460

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-------AKKFE 117
             T++ ++  C++  + + + K+L EM   G E    T+NT+I  Y +       AK + 
Sbjct: 461 RATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYG 520

Query: 118 EMESS------------FSAMVESG---------------GCHPDIFTLNSMISAYGNSG 150
           EM  S             +A+   G               G  P+  + + ++  Y  +G
Sbjct: 521 EMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAG 580

Query: 151 N---IEKMEK----------W----------------------YNEFNLMGVKADIQTLN 175
           N   IEK+EK          W                      +++    G K D+  +N
Sbjct: 581 NVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVIN 640

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +   + R  M+ K R ++ F+ +    P + TYN +++ + + G   K EE  K +++ 
Sbjct: 641 SMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNS 700

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G +P+ ++Y +++  + + GL+ +   +L ++    +      +N  +S Y      ++ 
Sbjct: 701 GPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEA 760

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKENSGKKLIQC 351
            E+   M E +C P  +T+  ++  Y   G  E A +  +K+    I+  + S K+L  C
Sbjct: 761 NEVIRFMIEHNCRPSELTYKILVDGYCKAGKYEEAMDFVSKIKELDISFDDQSVKRLGSC 820



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 143/296 (48%), Gaps = 4/296 (1%)

Query: 50  STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
           S + D+  V     DV  Y+ ++ S  +  ++     +  +M  +G++ + VTYN ++D 
Sbjct: 200 SKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDV 259

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           YGK  +  +        + S G   D FT +++ISA G  G +++  K+  E    G K 
Sbjct: 260 YGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKP 319

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
              T N + + +G+AG+Y +  S++  M+     P  VTYN +  T+ +AG +++     
Sbjct: 320 GTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVI 379

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
             M  +G+ PN+ITY +++ AY KAG       +   +++     +   +N +++  G+ 
Sbjct: 380 DTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKK 439

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
              E + ++   MK   C P+  T+ TM+    A+   E   N  NK++   +N G
Sbjct: 440 SRTEDVIKVLCEMKLNGCAPNRATWNTML----AVCSEEGKHNYVNKVLREMKNCG 491



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 148/346 (42%), Gaps = 37/346 (10%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82
           +G KP    Y +++  +G++G+  EA S + +M+  ++C PD  TY+ L  +  +    D
Sbjct: 315 NGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMED-NNCPPDSVTYNELAATYVRAGFLD 373

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
               ++  M+  G+  +A+TY T+ID YGKA + ++    FS M + G C P+++T NS+
Sbjct: 374 EGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLG-CAPNVYTYNSV 432

Query: 143 ISAYGNSGNIEKMEKWYNEFNL-----------------------------------MGV 167
           ++  G     E + K   E  L                                    G 
Sbjct: 433 LAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGF 492

Query: 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           + D  T N L  +Y R G       +   M K  F P V TYN ++    + G  +  E 
Sbjct: 493 EPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAES 552

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
             + M+ +G KPN  +Y  L+  YSKAG +  ++ + +++ +  V         ++    
Sbjct: 553 VIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNH 612

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +   +  M   F  +++    PD +   +M+  +    M   A+ +
Sbjct: 613 KCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREM 658



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 23/222 (10%)

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM-----EKWYNEFNLMGVKA 169
           KFE +E+ F                 S++ A   SGN E+        W +  +   ++ 
Sbjct: 135 KFELLEADFP----------------SLLKALDLSGNWERALLLFEWGWLHFGSDQNLRL 178

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           D Q + ++ +  GR   +     + D +    +   V  Y  ++ ++ + G  ++  + F
Sbjct: 179 DNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLF 238

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIM-KVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            KMK  G+ P  +TY  ++  Y K G    ++  +L ++ +  + LD    + +ISA G+
Sbjct: 239 GKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGR 298

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM-TEA 329
            G +++  +    +K     P  +T+ +M+Q +   G+ TEA
Sbjct: 299 EGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEA 340


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 155/328 (47%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA  L + M + G KP V  Y  L++   + G LDEA   +N+M S   C+P+V T++I+
Sbjct: 212 QAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG-CQPNVITHNII 270

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           ++S     R+   EK+L++M   G   S VT+N +I+   +             M    G
Sbjct: 271 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM-PMHG 329

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  + N ++  +     +++  ++ +     G   DI T N L  +  + G  D   
Sbjct: 330 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 389

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +++ +  +   P ++TYN VI+   K G  E+  +   +M+ +G+KP+ ITY SLVS  
Sbjct: 390 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 449

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           S+ G + +       +E   +  +   +N I+    ++   ++  +    M  + C P  
Sbjct: 450 SREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 509

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
            T+  +I+     G+ + A +L N++ +
Sbjct: 510 ATYTILIEGIAYEGLAKEALDLLNELCS 537



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 143/321 (44%), Gaps = 5/321 (1%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
            E M+  G  P +   T+L+  + + G   +A + + ++   S   PDV TY++LI    
Sbjct: 80  LESMVYRGDIPDIIPCTSLIRGFCRIGKTKKA-TWVMEILEQSGAVPDVITYNVLISGYC 138

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K    D   ++L  M+   +    VTYNTI+     + K ++        ++   C+PD+
Sbjct: 139 KSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE-CYPDV 194

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            T   +I A      + +  K  +E    G K D+ T N+L     + G  D+    ++ 
Sbjct: 195 ITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 254

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M      P V+T+NI++ +    G     E+    M  +G  P+ +T+  L++   + GL
Sbjct: 255 MPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGL 314

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + +   IL ++       ++  +N ++  + +   +++  E    M  R C PD +T+ T
Sbjct: 315 LGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT 374

Query: 317 MIQAYNALGMTEAAQNLENKM 337
           ++ A    G  + A  + N++
Sbjct: 375 LLTALCKDGKVDVAVEILNQL 395



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 118 EMESSF---SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE-FNLMGVKADIQT 173
           E+E  F    +MV  G   PDI    S+I  +   G  +K   W  E     G   D+ T
Sbjct: 72  ELEDGFKFLESMVYRGDI-PDIIPCTSLIRGFCRIGKTKK-ATWVMEILEQSGAVPDVIT 129

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N+L   Y ++G  D    V+D M      P VVTYN ++ T   +G +++  E   +  
Sbjct: 130 YNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 186

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +   P+ ITY  L+ A  K   + +   +L ++ N     D   +N +I+   + G ++
Sbjct: 187 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 246

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  +    M    C P+ IT   ++++  + G    A+ L + M+
Sbjct: 247 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDML 291



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 3/189 (1%)

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +G +E   K+       G   DI     L + + R G   K   VM+ +++    P V+T
Sbjct: 70  NGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVIT 129

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN++I  + K+G I+   +   +M    + P+ +TY +++     +G + +   +L +  
Sbjct: 130 YNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 186

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
             +   D   +  +I A  +   V +  +L   M+ +   PD +T+  +I      G  +
Sbjct: 187 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 246

Query: 329 AAQNLENKM 337
            A    N M
Sbjct: 247 EAIKFLNNM 255



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E+A  L + M   GLKP +  Y++LVS   + G +DEA    +D++ +   +P
Sbjct: 414 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLG-IRP 472

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
           +  TY+ ++    K  + D     LA M     + +  TY  +I+G
Sbjct: 473 NAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEG 518



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           + G +E   ++ + M +RG  P+ I   SL+  + + G   K   ++  +E S  + D  
Sbjct: 69  RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 128

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +N +IS Y ++G+++   ++   M   +  PD +T+ T+++     G  + A  + ++ 
Sbjct: 129 TYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQ 185

Query: 338 I 338
           +
Sbjct: 186 L 186


>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
 gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
          Length = 674

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 137/275 (49%), Gaps = 1/275 (0%)

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YTY++++K      + +L EK++ EM+  GI+    T++T+I+   + ++ EE    F  
Sbjct: 144 YTYNVMLKILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFER 203

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M +S G  PD  T NS+I  YG  G + +  + Y +   +  K D  T   +   Y RAG
Sbjct: 204 M-KSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAG 262

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            Y  +  ++  M+     P  V  N ++ T  KAG + + ++ F +M+  G+ P  +T  
Sbjct: 263 DYQSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLS 322

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            LV  Y++ G   +   +   ++      D   +N ++ A  + G VE+  ++   MK  
Sbjct: 323 ILVEMYTRVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRA 382

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            C PD++T+ T +  Y   GM + A+ + +K++A+
Sbjct: 383 GCNPDHLTYRTAMNTYATKGMVDPARRMFDKVVAL 417



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 147/309 (47%), Gaps = 3/309 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L   +Q E +  L E M   G++P    ++ L++   +    +EA      MKS     
Sbjct: 152 ILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFERMKS-EGIV 210

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY+ +I    +  R +   ++  ++  +  +   VTY  I + Y +A  ++ +   
Sbjct: 211 PDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGDYQSIIQL 270

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M +SG   P+   +N+++     +G + + +K +NE    GV     TL+IL + Y 
Sbjct: 271 VQEMRDSGS-SPNAVIMNTLMGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYT 329

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G YD+   V + ++   +   V  YN +++   + G +E+ E+  K+MK  G  P+ +
Sbjct: 330 RVGAYDQAFEVYETLKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHL 389

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY + ++ Y+  G++     +  +V   +   DTP F  +I A   AG++E+  ++F  M
Sbjct: 390 TYRTAMNTYATKGMVDPARRMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEM 449

Query: 303 KERHCV-PD 310
            E  C  PD
Sbjct: 450 MESGCCSPD 458



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 36/170 (21%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M  L K  +  QA  +F  M + G+ P+    + LV  Y + G  D+AF     +K+   
Sbjct: 290 MGTLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKT-EG 348

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---------- 110
            K DV  Y+ L+K+C +  R +  E IL EM   G     +TY T ++ Y          
Sbjct: 349 WKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPAR 408

Query: 111 ----------GK---------------AKKFEEMESSFSAMVESGGCHPD 135
                     GK               A + E+    F  M+ESG C PD
Sbjct: 409 RMFDKVVALNGKPDTPLFTVMIRACKLAGEIEQASKIFDEMMESGCCSPD 458


>gi|410110143|gb|AFV61151.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           velutina]
          Length = 382

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 81

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 260

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 261 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  SEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D I F TMI AY   G+   A+ L +++
Sbjct: 243 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 27  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 85

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 144

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 145 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 261

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAVDAGEVKDITVFER 321

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 322 MVHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 377



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 31/262 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 179

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K       F+
Sbjct: 180 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 239

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        F  M+   E  G              PD    ++ I     +G IE+
Sbjct: 240 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEE 299

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +     +   Y  +  V D M+   +FP      IV+ 
Sbjct: 300 ATYVFRQAVDAGEVKDITVFERMVHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 359

Query: 215 TFGKAGHIEKMEEYFKKMKHRG 236
            +GK    +K  + + +M+  G
Sbjct: 360 AYGKLQEFDKANDVYMEMQEVG 381


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 165/336 (49%), Gaps = 6/336 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K   +A  LF  M+S G+ P V  Y+AL+S +   G L++A    N M  + + KPDV
Sbjct: 237 KVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKM-ILENIKPDV 295

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YT++IL+ +  K  +    + +   M   GI+ + VTYN+++DGY   K+  + +S F+ 
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNT 355

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M + GG +PDI + + MI+ +      ++    + E +   +  D+ T + L     ++G
Sbjct: 356 MAQ-GGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSG 414

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
                  ++D M  R   PT+ TYN +++   K   ++K      K+K +G++PN  TY 
Sbjct: 415 RISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYS 474

Query: 246 SLVSAYSKAGLIMKVDSILRQ--VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
            L+    ++G +     +     V+  ++ +DT  +  +I  +   G   +   L   M+
Sbjct: 475 ILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDT--YTIMIQGFCVEGLFNEALALLSKME 532

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +  C+PD  T+  +I +       + A+ L  +MIA
Sbjct: 533 DNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIA 568



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 154/337 (45%), Gaps = 6/337 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--CKPDVY 66
           Q +QA L  + +++ G       Y  L+    + G   E  + ++ ++ V     +P+V 
Sbjct: 170 QIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG---ETRAALDLLQRVDGNLVQPNVV 226

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y+ +I S  K    +    + +EM   GI    VTY+ +I G+    K  +    F+ M
Sbjct: 227 MYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKM 286

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           +      PD++T N +++A+   G +++ +  ++     G+K +  T N L   Y     
Sbjct: 287 ILEN-IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKE 345

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            +K +S+ + M +    P + +Y+I+I  F K    ++    FK+M  + + P+ +TY S
Sbjct: 346 VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+   SK+G I     ++ Q+ +  V      +N I+ A  +   V+K   L   +K++ 
Sbjct: 406 LIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKG 465

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
             P+  T++ +I+     G  E A+ +   ++    N
Sbjct: 466 IQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHN 502



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 152/343 (44%), Gaps = 20/343 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K       L + M   G+KP++     L++ + Q GL+  AFS    +  +    P
Sbjct: 95  LVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYV-P 153

Query: 64  DVYTYSILIKS-CTKFH---RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           D  T++ LIK  C K      F   +K++A    LG     ++Y T+I G  K     E 
Sbjct: 154 DTITFTTLIKGLCLKGQIQQAFLFHDKVVA----LGFHFDQISYGTLIHGLCKVG---ET 206

Query: 120 ESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
            ++   +  V+     P++   N++I +      + +    ++E    G+  D+ T + L
Sbjct: 207 RAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSAL 266

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFF---FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
              +   G   K+   +D   K       P V T+NI++  F K G +++ +  F  M  
Sbjct: 267 ISGFCILG---KLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMK 323

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           +G+KPN +TY SL+  Y     + K  SI   +    V  D   ++ +I+ + +    ++
Sbjct: 324 QGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDE 383

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              LF  M  ++ +PD +T++++I   +  G    A  L ++M
Sbjct: 384 AMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM 426



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 113/263 (42%), Gaps = 2/263 (0%)

Query: 77  KFHRFDLIEKI-LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           KF  F  ++      + Y   + + ++Y++    +      ++  S F+ ++      P 
Sbjct: 26  KFQSFQFLKNTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTT-PP 84

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            F  N ++ +   S +   +     +    G+K ++   NIL   + + G+     SV  
Sbjct: 85  AFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFA 144

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            + K  + P  +T+  +I+     G I++   +  K+   G   + I+Y +L+    K G
Sbjct: 145 KILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG 204

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
                  +L++V+ + V  +   +N II +  +   V +  +LF  M  +   PD +T++
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYS 264

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
            +I  +  LG    A +L NKMI
Sbjct: 265 ALISGFCILGKLNDAIDLFNKMI 287



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 2/166 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  L + M   G+ P++  Y +++ A  +   +D+A + +  +K     +P
Sbjct: 410 LSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKD-KGIQP 468

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++YTYSILIK   +  + +   K+   +   G   +  TY  +I G+     F E  +  
Sbjct: 469 NMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALL 528

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           S M E  GC PD  T   +I +       +  EK   E    GV+ 
Sbjct: 529 SKM-EDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/290 (17%), Positives = 119/290 (41%), Gaps = 37/290 (12%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y++  + +  +  +D+A S  N +    +  P  + ++ ++ S  K   +  +  +  +M
Sbjct: 53  YSSTSTTFHSNNDVDDAVSLFNRLLR-RNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKM 111

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
            + GI+ + V  N +I+ + +        S F+ +++ G   PD  T  ++I      G 
Sbjct: 112 EFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYV-PDTITFTTLIKGLCLKGQ 170

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           I++   ++++   +G   D  +   L     + G   + R+ +D +Q+       V  N+
Sbjct: 171 IQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG---ETRAALDLLQR-------VDGNL 220

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           V                         +PN + Y +++ +  K  L+ +   +  ++ +  
Sbjct: 221 V-------------------------QPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKG 255

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +  D   ++ +IS +   G +    +LF  M   +  PD  TF  ++ A+
Sbjct: 256 ISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAF 305



 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 35/153 (22%)

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D   S+ + + +R   P    +N ++ +  K+ H   +    +KM+ RG+KPN +    L
Sbjct: 67  DDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNIL 126

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++ + + GLI                   PF      A+     + KMG           
Sbjct: 127 INCFCQLGLI-------------------PF------AFSVFAKILKMGY---------- 151

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           VPD ITF T+I+     G  + A    +K++A+
Sbjct: 152 VPDTITFTTLIKGLCLKGQIQQAFLFHDKVVAL 184


>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hermannioides]
          Length = 382

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 81

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 260

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 261 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  SEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLR 242

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D I F TMI AY   G+   A+ L +++
Sbjct: 243 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 27  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 85

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 144

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 145 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 261

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  +     F  
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKXITVFER 321

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 322 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 377



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 141/339 (41%), Gaps = 39/339 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S  ++M+ +  C 
Sbjct: 49  VFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIK-CL 107

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 108 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 167

Query: 123 FSAM----------------------------------VESGGCHPDIFTLNSMISAYGN 148
           F  M                                  ++S G  P+  T +++IS +G 
Sbjct: 168 FRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGK 227

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G +++    + +    GV+ D      +  +Y RAG+    + ++  +++    P  + 
Sbjct: 228 XGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIP 283

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
            +  I     AG IE+    F++    G       +  ++   SK      V  +  ++ 
Sbjct: 284 RDTAIHILAGAGRIEEATYVFRQAIDAGEVKXITVFERMIHLLSKYKKYSNVVEVFDKMR 343

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
                 D+     +++AYG+  + +K  ++++ M+E  C
Sbjct: 344 GLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVGC 382


>gi|410110115|gb|AFV61137.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           hederifolia]
          Length = 364

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 5   KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 63

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 64  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 242

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 243 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 282



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 127/251 (50%), Gaps = 1/251 (0%)

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           I + +   G     V YN +I+ +GKAK F E  S  S M ++ G  P+  + +++++ Y
Sbjct: 9   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEM-KTAGVMPNTTSYSTLLTMY 67

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +    +    ++E   +    D+ T NI+   YG+ GM  +   +   M+K    P V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K ++++++
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 187

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+
Sbjct: 188 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGL 247

Query: 327 TEAAQNLENKM 337
              A+ L +++
Sbjct: 248 VAHAKRLLHEL 258



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 156/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 9   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 67

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 126

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 127 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKANN 183

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 184 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 243

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 244 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 303

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 304 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 359



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 105/217 (48%), Gaps = 1/217 (0%)

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S FS +  SG   PD+   N+MI+ +G +    +     +E    GV  +  + + L   
Sbjct: 8   SIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTM 66

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y     + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN
Sbjct: 67  YVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPN 126

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ++Y +L+  Y  A L  +   + R ++   +  +   +N ++  YG+  + EK   L  
Sbjct: 127 VVSYNTLLRVYGDAELFGEAIHLFRLMQRKSIEQNVVTYNSMMMIYGKTLEHEKANNLIQ 186

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M+ R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 187 EMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 223



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 70/135 (51%)

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 62

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++ Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 307 CVPDNITFATMIQAY 321
             P+ +++ T+++ Y
Sbjct: 123 IEPNVVSYNTLLRVY 137



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 107/262 (40%), Gaps = 31/262 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+  S  + +
Sbjct: 103 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKS-IEQN 161

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K       F+
Sbjct: 162 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 221

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        F  M+   E  G              PD    ++ I     +G IE+
Sbjct: 222 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEE 281

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +     +   Y  +  V D M+   +FP      IV+ 
Sbjct: 282 ATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 341

Query: 215 TFGKAGHIEKMEEYFKKMKHRG 236
            +GK    +K  + + +M+  G
Sbjct: 342 AYGKLQEFDKANDVYMEMQEVG 363


>gi|410110147|gb|AFV61153.1| pentatricopeptide repeat-containing protein 123, partial [Phyla
           nodiflora]
          Length = 419

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 139/284 (48%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     ++ EM   G+     +Y+T+
Sbjct: 47  KAISIFSRLKX-SGXXPDLXAYNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTL 105

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y +  KF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 106 LTMYVENXKFLEALSVFSEMREXK-CLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMG 164

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN +I  +GK    EK  
Sbjct: 165 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKAN 224

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 225 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 284

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 285 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 324



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/303 (24%), Positives = 146/303 (48%), Gaps = 4/303 (1%)

Query: 36  VSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           ++ +G+ GL D A S +  M+   D  P D+   S LI+   K   +     I + +   
Sbjct: 1   ITHFGKEGLFDXALSWLQKMEX--DXVPGDLVLXSNLIELSRKLCDYSKAISIFSRLKXS 58

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G       YN +I+ +GKAK F E  S    M ++ G  P   + +++++ Y  +    +
Sbjct: 59  GXXPDLXAYNAMINVFGKAKLFREARSLIXEM-KTAGVMPXTTSYSTLLTMYVENXKFLE 117

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               ++E        D+ T NI+   YG+ GM  +   +   M+K    P VV+YN ++ 
Sbjct: 118 ALSVFSEMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLR 177

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +G A    +    F+ M+ + ++ N +TY S++  Y K     K +++++++++  +  
Sbjct: 178 VYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEP 237

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+   A+ L 
Sbjct: 238 NSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLL 297

Query: 335 NKM 337
           +++
Sbjct: 298 HEL 300



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 157/356 (44%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P   +YS L+   
Sbjct: 51  IFSRLKXSGXXPDLXAYNAMINVFGKAKLFREARSLIXEMKT-AGVMPXTTSYSTLLTMY 109

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM          T N +ID YG+    +E +  F  M    G  P+
Sbjct: 110 VENXKFLEALSVFSEMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 168

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 169 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANN 225

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++ AY 
Sbjct: 226 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 285

Query: 253 KAGLIMKVDSIL-------------------------------RQVENSDVILDTPFFNC 281
           +AGL+     +L                               RQ  +S  + D   F  
Sbjct: 286 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDSGEVKDITVFER 345

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 346 MIHLLSKYKKYMNVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLHEFDKASDIYMEM 401


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 150/329 (45%), Gaps = 2/329 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  M  D   P+V  YT L+ A   SG   EA +  N+MK    C+P+V+TY++L
Sbjct: 282 EALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKE-KGCEPNVHTYTVL 340

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K ++ D   K+L+EMS  G+  S VTYN +IDGY K    ++       M ES  
Sbjct: 341 IDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLM-ESNS 399

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  T N +I        + K     N+     +   + T N L     +    +   
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAY 459

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++  M +    P   TY++ I+T  K G +E+    F  +K +G+K N + Y +L+  Y
Sbjct: 460 RLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGY 519

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K G I    S+L ++ N   + ++  +N +I    +   +++   L   M      P  
Sbjct: 520 CKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTV 579

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAM 340
           +T+  +I      G  + A  + N M+++
Sbjct: 580 VTYTILIGEMLKDGAFDHALKVFNHMVSL 608



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 147/328 (44%), Gaps = 4/328 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   ++A  +   M   GL PSV  Y AL+  Y + G++D+AF  ++ M+S S C 
Sbjct: 343 GLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS-CG 401

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+  TY+ LI    K  +      +L +M    +  S +TYN++I G  K    E     
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRL 461

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            S M E+G   PD +T +  I      G +E+    ++     GVKA+      L   Y 
Sbjct: 462 LSLMNENGLV-PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYC 520

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D   S+++ M      P   TYN++IE   K   +++      KM   G+KP  +
Sbjct: 521 KVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVV 580

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+    K G       +   + +     D   +   + AY   G +E++ ++   M
Sbjct: 581 TYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKM 640

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
            E   +PD +T+  +I  Y  LG+T  A
Sbjct: 641 NEEGILPDLVTYTVLIDGYARLGLTHRA 668



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 144/328 (43%), Gaps = 4/328 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A L    ++  GL P    YT+L+  + ++  +D A+     M     C+ +  +Y+ L
Sbjct: 212 EAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQ-KGCQRNEVSYTNL 270

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-GKAKKFEEMESSFSAMVESG 130
           I    +  R +   K+ A+M+      +  TY  +I    G  +K E + + F+ M E G
Sbjct: 271 IHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEAL-NLFNEMKEKG 329

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P++ T   +I        +++  K  +E +  G+   + T N L   Y + GM D  
Sbjct: 330 -CEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDA 388

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++D M+     P   TYN +I    K   + K      KM  R + P+ ITY SL+  
Sbjct: 389 FEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG 448

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K   +     +L  +  + ++ D   ++  I    + G VE+ G LF ++K +    +
Sbjct: 449 QCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKAN 508

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
            + +  +I  Y  +G  + A +L  +M+
Sbjct: 509 EVIYTALIDGYCKVGKIDVAYSLLERML 536



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 121/266 (45%), Gaps = 4/266 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK+ +  +A  L   ML   L PS+  Y +L+    +   L+ A+  ++ M   +
Sbjct: 410 LICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNE-N 468

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD +TYS+ I +  K  R +    +   +   G++ + V Y  +IDGY K  K +  
Sbjct: 469 GLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVA 528

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            S    M+ +  C P+ +T N +I        +++      +   MGVK  + T  IL  
Sbjct: 529 YSLLERML-NDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIG 587

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G +D    V + M    + P V TY   +  +   G +E++++   KM   G+ P
Sbjct: 588 EMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILP 647

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILR 265
           + +TY  L+  Y++ GL  +    L+
Sbjct: 648 DLVTYTVLIDGYARLGLTHRAFDFLK 673



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 156/334 (46%), Gaps = 10/334 (2%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   E+A  LF+ + + G+K +  +YTAL+  Y + G +D A+S +  M +   C P+
Sbjct: 485 CKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLN-DACLPN 543

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            YTY++LI+   K  +      ++A+M  +G++ + VTY  +I    K   F+     F+
Sbjct: 544 SYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN 603

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            MV S G  PD+ T  + + AY + G +E+++    + N  G+  D+ T  +L   Y R 
Sbjct: 604 HMV-SLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARL 662

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G+  +    +  M      P++   +I+I+      H  +M+E   ++    +  +++  
Sbjct: 663 GLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLS---HENRMKETRSEIGIDSV--SNVNS 717

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +   +      + +    + VE+   I D   +  +I+ + Q   +E+   L   MKE
Sbjct: 718 VDIADVWKTLEYEIALKLFEKMVEHGCTI-DVSIYGALIAGFCQQERLEEAQGLVHHMKE 776

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           R   P    + +++     LG+   A  L + M+
Sbjct: 777 RGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMV 810



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 150/358 (41%), Gaps = 30/358 (8%)

Query: 10  PEQASLLFE-VMLSDGLKPSVDVYTALVSAYGQSGLLDEA----FSTINDMKSVSDC--- 61
           P+ A   F  + L  G K +V  Y+++++   ++ LL  A     S I    S+ D    
Sbjct: 81  PQTALSFFNWIALRPGFKHNVHSYSSMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFV 140

Query: 62  ---------------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
                          KP +  Y+ ++ S +KF   D ++ +  E+    I  +  T+N +
Sbjct: 141 LEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAM 200

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM- 165
           ++GY K     E E   S +V++G  HPD FT  S+I  +  +  ++     Y  F +M 
Sbjct: 201 VNGYCKIGNVVEAELYASKIVQAG-LHPDTFTYTSLILGHCRNKGVDNA---YEVFLIMP 256

Query: 166 --GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
             G + +  +   L      AG  ++   +   M +    PTV TY ++I     +G   
Sbjct: 257 QKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKV 316

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
           +    F +MK +G +PN  TY  L+    K   + +   +L ++    +I     +N +I
Sbjct: 317 EALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALI 376

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
             Y + G ++   E+   M+   C P+  T+  +I           A  L NKM+  K
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK 434



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 120/254 (47%), Gaps = 10/254 (3%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+ +  +AS L   ML+ G+KP+V  YT L+    + G  D A    N M S+   +
Sbjct: 553 GLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLG-YQ 611

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TY+  + +       + ++ ++A+M+  GI    VTY  +IDGY +          
Sbjct: 612 PDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDF 671

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              MV++G C P ++ ++ +I    N  +  +M++  +E  +  V +++ +++I      
Sbjct: 672 LKCMVDTG-CKPSLYIVSILIK---NLSHENRMKETRSEIGIDSV-SNVNSVDI--ADVW 724

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +   Y+    + + M +      V  Y  +I  F +   +E+ +     MK RGM P+  
Sbjct: 725 KTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSED 784

Query: 243 TYCSLVSAYSKAGL 256
            Y SL+    K G+
Sbjct: 785 IYNSLLDCCCKLGV 798


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 147/320 (45%), Gaps = 7/320 (2%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G C+  Q E+A  L   M   G  P   +Y AL+S Y ++    +AF  + +M   
Sbjct: 47  ILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVK- 105

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           + C P V TY+ ++    K  R     K+L EM   G   +  TYN I++G  + +K +E
Sbjct: 106 NHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDE 165

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            +     M   G   PD+ T NS I        +++  K+      M V  D+ +   + 
Sbjct: 166 AKKMLEEMAVRGY-FPDVVTYNSFIKGLCKCDRVDEARKFLAR---MPVTPDVVSYTTVI 221

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               ++G  D    ++D M  R   P VVTY+ +I+ F K G +E+       M   G +
Sbjct: 222 NGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCR 281

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN + Y SL+ A  + G I K + +L ++E      D   +N  I    +A  V+K   +
Sbjct: 282 PNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAV 341

Query: 299 FLTMKERHCVPDNITFATMI 318
           F  M ER C P+  +++ +I
Sbjct: 342 FDRMVERGCTPNASSYSMLI 361



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 148/310 (47%), Gaps = 5/310 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G + +V  Y  L+    +    D+A +   +M   S C+PD +T++IL++   + ++ + 
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKS-CQPDAFTFAILLRGLCRSNQLEK 60

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             K+L  M  +G       YN +I GY KAK F +     + MV++  C P + T  +++
Sbjct: 61  ARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKN-HCLPTVVTYTNIV 119

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                +       K  +E    G   +I T N++ +        D+ + +++ M  R +F
Sbjct: 120 DGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF 179

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVTYN  I+   K   +++  ++  +M    + P+ ++Y ++++   K+G +     +
Sbjct: 180 PDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRM 236

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L  + N     D   ++ +I  + + G+VE+   L  +M +  C P+ + + +++ A + 
Sbjct: 237 LDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHR 296

Query: 324 LGMTEAAQNL 333
           LG    A+++
Sbjct: 297 LGHIGKAEDM 306



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 149/343 (43%), Gaps = 31/343 (9%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK  +   AS + + M + G  P V  Y++L+  + + G ++ A   ++ M  + 
Sbjct: 220 VINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLG 279

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C+P++  Y+ L+ +  +       E +L EM   G     V+YN  IDG  KA++ ++ 
Sbjct: 280 -CRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKA 338

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           ++ F  MVE G C P+  + + +I                          DI    +L  
Sbjct: 339 KAVFDRMVERG-CTPNASSYSMLI-------------------------VDILLYTVLLD 372

Query: 180 SYGRAGMYDKMRSVMD-FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
              + G +D+  ++    + ++   P V  YN+++++  K   I+K  +  K+M  +   
Sbjct: 373 GLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNC- 431

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            N +T+  LV        +   +++L  + +   I D   +  ++ A  + G      EL
Sbjct: 432 CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALEL 491

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           F    +  CVPD +T++ +I       M E A  L  K++  +
Sbjct: 492 FEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERR 534



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 112/282 (39%), Gaps = 39/282 (13%)

Query: 94  LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153
           +G E +  TYN ++    +  + ++  + F  M++   C PD FT   ++     S  +E
Sbjct: 1   MGYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKS-CQPDAFTFAILLRGLCRSNQLE 59

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY---- 209
           K  K       MG   D    N L   Y +A  + +    +  M K    PTVVTY    
Sbjct: 60  KARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIV 119

Query: 210 -------------------------------NIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                                          N+++E   +   +++ ++  ++M  RG  
Sbjct: 120 DGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYF 179

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ +TY S +    K     +VD   + +    V  D   +  +I+   ++GD++    +
Sbjct: 180 PDVVTYNSFIKGLCKCD---RVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRM 236

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
              M  R C PD +T++++I  +   G  E A  L + M+ +
Sbjct: 237 LDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKL 278


>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
          Length = 496

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 161/343 (46%), Gaps = 4/343 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  +A  +F+ M   GL P+   YTAL+  Y   G  ++ F+   +M+     +
Sbjct: 47  GCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRR-GGVE 105

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++YTY+ LI    +   F+    +  EM   GI  + V+YNT+I G  +  K  +  + 
Sbjct: 106 PNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDA-AK 164

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+ + G  P I T N ++  YG +G +     ++N+    G +    T N+L   + 
Sbjct: 165 LLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKAAGFQPSAVTYNMLIAGFC 224

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           RA    +    +  M++R   PT VTY I+I++F +  H+ K  E    M+  G++ ++ 
Sbjct: 225 RARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAH 284

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  LV A    G +     + + +    V      ++ +I  YG+ G   K  +L + M
Sbjct: 285 TYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEM 344

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           +++  +P++ ++   I+        + A+ L + M  ++  +G
Sbjct: 345 RQKGLIPNSASYGLTIRVLCKDDKCQEAEALLDDMETIRSFAG 387



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 148/323 (45%), Gaps = 13/323 (4%)

Query: 19  VMLSDGLKPS-----VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 73
            ML+ G K       V   TALV+   + G + EA    ++M  +    P+  TY+ L+ 
Sbjct: 23  AMLARGTKSGDAALDVTACTALVNGCCKGGDVAEARRVFDEMPLLG-LAPNEVTYTALMH 81

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
                 + +    +  EM   G+E +  TYN +I  + +  +FE   S F  M   G   
Sbjct: 82  GYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVR 141

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
            ++ + N++I+     G +    K  +     G +  I T N+L   YG+AG   KM + 
Sbjct: 142 -NVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAG---KMSNA 197

Query: 194 MDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + F   M+   F P+ VTYN++I  F +A  + +       MK RG++P  +TY  L+ +
Sbjct: 198 LPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDS 257

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           +++   + K   IL  +E + + +D   +  ++ A    G+++   +LF +M E+   P 
Sbjct: 258 FARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPS 317

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
           N+ +  MI  Y   G +  A  L
Sbjct: 318 NVIYDMMIYGYGREGSSYKALKL 340



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 70/170 (41%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           D+     L     + G   + R V D M      P  VTY  ++  +   G  EK    F
Sbjct: 37  DVTACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALF 96

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M+  G++PN  TY  L+  + + G   +  S+  ++    ++ +   +N +I+   + 
Sbjct: 97  EEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLIAGLCRH 156

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           G +    +L   M+     P  ITF  ++  Y   G    A    N+M A
Sbjct: 157 GKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNALPFFNQMKA 206


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 154/340 (45%), Gaps = 3/340 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ L K  +   A  +F+ ML  GLK  V+V   L+    + G+L +A   ++ M + + 
Sbjct: 168 VIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHA- 226

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C  D +TY IL+ +  +  +   +   +    + G   SAV YN II G+ +  +  E  
Sbjct: 227 CARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEAT 286

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F + +      PD+FT N +I A   S  +E+    + E    GV  D+ T + L  +
Sbjct: 287 QLFESTMTKESV-PDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDA 344

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           +G+AG   K   V   MQK    P  V YN++I   GK G +++  E  + M  +G+ P+
Sbjct: 345 FGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPD 404

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY  ++   S  G   K  S    ++      D   +N +++   +    ++  +LF 
Sbjct: 405 CRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFD 464

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            M+   C+PD  TF T+I      G  E A     +++ M
Sbjct: 465 EMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKM 504



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 151/369 (40%), Gaps = 44/369 (11%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDV 65
           Q  + +   E+   DG   S   Y  ++  + + G L EA   F +    +SV    PDV
Sbjct: 246 QMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESV----PDV 301

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           +TY++LI  C K  + +    +  E    G+     TY+ ++D +GKA +  +    F  
Sbjct: 302 FTYNLLIALC-KSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYN 360

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M +  GC PD    N +IS  G  G +++  +   + N  G+  D +T NI+       G
Sbjct: 361 M-QKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCG 419

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIV--------------------------------- 212
            Y+K  S    M++R   P VVTYN +                                 
Sbjct: 420 RYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFG 479

Query: 213 --IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             I+T  KAG +E   E   ++   G  PNS  Y +L+S + ++G + K   + + +   
Sbjct: 480 TLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIEC 539

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
               D+  +  ++  + + G      EL   M      P   T+  +I++ +  G  E A
Sbjct: 540 SCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDA 599

Query: 331 QNLENKMIA 339
             L  +MIA
Sbjct: 600 YTLFKEMIA 608



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/341 (20%), Positives = 140/341 (41%), Gaps = 37/341 (10%)

Query: 33  TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 92
           T  + A+G++G LD A   ++DM+  + C+PD   ++  +    +  R +    +  +M 
Sbjct: 57  TECIQAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMR 116

Query: 93  YLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
               +C+   V YNT+I GY KA   +     F  + + G C P+  + ++++       
Sbjct: 117 ET-CDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMS 175

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
                   + E    G+KAD+   N L     R GM  + R ++  M          TY 
Sbjct: 176 RATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYG 235

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD--------- 261
           I++    +AG + ++  + +  +H G   +++ Y  ++  + + G + +           
Sbjct: 236 ILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTK 295

Query: 262 -------------------------SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
                                    ++ ++ E   V+LD   ++ ++ A+G+AG   K  
Sbjct: 296 ESVPDVFTYNLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKAL 355

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           E+F  M++  C+PD + +  +I      G  + A  L   M
Sbjct: 356 EVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM 396



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 140/331 (42%), Gaps = 3/331 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           M  L + ++ EQA  LF+ M       P V  Y  L++ Y ++G  D A      +K   
Sbjct: 96  MHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEG 155

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            CKP+  ++  L+    K  R      +  EM   G++      NT+I    +     + 
Sbjct: 156 SCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQA 215

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 M  +  C  D FT   +++A+  +G + ++  +       G        N + +
Sbjct: 216 RRLLHHMT-AHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQ 274

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + R G   +   + +    +   P V TYN++I    K+  +E+    F++ +  G+  
Sbjct: 275 GFIRCGRLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVL 333

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  TY  L+ A+ KAG   K   +   ++ +  + DT  +N +IS  G+ G V++  EL 
Sbjct: 334 DVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELL 393

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAA 330
             M  +  +PD  T+  +I   ++ G  E A
Sbjct: 394 EDMNRKGIMPDCRTYNIVIDVLSSCGRYEKA 424



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 113/281 (40%), Gaps = 35/281 (12%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS--- 57
           M   GK  +  +A  +F  M   G  P   VY  L+S  G+ G +DEA   + DM     
Sbjct: 342 MDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGI 401

Query: 58  VSDCK-------------------------------PDVYTYSILIKSCTKFHRFDLIEK 86
           + DC+                               PDV TY+ L+    K  R D    
Sbjct: 402 MPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACD 461

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  EM          T+ T+ID   KA + E+     + +V+ G   P+ +  N++IS +
Sbjct: 462 LFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHA-PNSYIYNALISGF 520

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             SG ++K  + + +        D  T  IL   + R G       ++  M +    P +
Sbjct: 521 CRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPAL 580

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            TYN++I +   AG +E     FK+M  +G  P+  TY +L
Sbjct: 581 ATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 621



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 109/273 (39%), Gaps = 36/273 (13%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +T + ++K   K  R +L+ ++LAE+   G+  S VT    I  +G+A   +      
Sbjct: 17  DAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGRAGDLDAAMGML 76

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M     C PD     + +              W  E     V+   Q + +       
Sbjct: 77  DDMRRGNFCQPDTVAFTAAM-------------HWLCE-----VRRVEQAMTL------- 111

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSI 242
              +D MR   D        P VV YN +I  + KAG  ++  + F+++K  G  KPN++
Sbjct: 112 ---FDDMRETCDCA------PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAV 162

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           ++ +LV    K        ++ +++  + +  D    N +I    + G + +   L   M
Sbjct: 163 SFDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHM 222

Query: 303 KERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
               C  D  T+  ++ A+   G M E A  +E
Sbjct: 223 TAHACARDAFTYGILVNAHCRAGQMHEVASFME 255



 Score = 44.3 bits (103), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 76/157 (48%), Gaps = 5/157 (3%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G+  D  T   + K   + G  + +  ++  ++++    + VT    I+ FG+AG ++  
Sbjct: 13  GLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGRAGDLDAA 72

Query: 226 EEYFKKMKHRG--MKPNSITYCSLVSAYSKAGLIMKVDSILRQV-ENSDVILDTPFFNCI 282
                 M+ RG   +P+++ + + +    +   + +  ++   + E  D   D   +N +
Sbjct: 73  MGMLDDMR-RGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTL 131

Query: 283 ISAYGQAGDVEKMGELFLTMK-ERHCVPDNITFATMI 318
           I+ Y +AGD ++  ++F  +K E  C P+ ++F T++
Sbjct: 132 IAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLV 168


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 155/328 (47%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA  L + M + G KP V  Y  L++   + G LDEA   +N+M S   C+P+V T++I+
Sbjct: 269 QAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG-CQPNVITHNII 327

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           ++S     R+   EK+L++M   G   S VT+N +I+   +             M    G
Sbjct: 328 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM-PMHG 386

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  + N ++  +     +++  ++ +     G   DI T N L  +  + G  D   
Sbjct: 387 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 446

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +++ +  +   P ++TYN VI+   K G  E+  +   +M+ +G+KP+ ITY SLVS  
Sbjct: 447 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 506

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           S+ G + +       +E   +  +   +N I+    ++   ++  +    M  + C P  
Sbjct: 507 SREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 566

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
            T+  +I+     G+ + A +L N++ +
Sbjct: 567 ATYTILIEGIAYEGLAKEALDLLNELCS 594



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 143/321 (44%), Gaps = 5/321 (1%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
            E M+  G  P +   T+L+  + + G   +A + + ++   S   PDV TY++LI    
Sbjct: 137 LESMVYRGDIPDIIPCTSLIRGFCRIGKTKKA-TWVMEILEQSGAVPDVITYNVLISGYC 195

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K    D   ++L  M+   +    VTYNTI+     + K ++        ++   C+PD+
Sbjct: 196 KSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE-CYPDV 251

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            T   +I A      + +  K  +E    G K D+ T N+L     + G  D+    ++ 
Sbjct: 252 ITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 311

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M      P V+T+NI++ +    G     E+    M  +G  P+ +T+  L++   + GL
Sbjct: 312 MPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGL 371

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + +   IL ++       ++  +N ++  + +   +++  E    M  R C PD +T+ T
Sbjct: 372 LGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT 431

Query: 317 MIQAYNALGMTEAAQNLENKM 337
           ++ A    G  + A  + N++
Sbjct: 432 LLTALCKDGKVDVAVEILNQL 452



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 9/225 (4%)

Query: 118 EMESSF---SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE-FNLMGVKADIQT 173
           E+E  F    +MV  G   PDI    S+I  +   G  +K   W  E     G   D+ T
Sbjct: 129 ELEDGFKFLESMVYRGDI-PDIIPCTSLIRGFCRIGKTKK-ATWVMEILEQSGAVPDVIT 186

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N+L   Y ++G  D    V+D M      P VVTYN ++ T   +G +++  E   +  
Sbjct: 187 YNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 243

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +   P+ ITY  L+ A  K   + +   +L ++ N     D   +N +I+   + G ++
Sbjct: 244 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 303

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  +    M    C P+ IT   ++++  + G    A+ L + M+
Sbjct: 304 EAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDML 348



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 3/189 (1%)

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +G +E   K+       G   DI     L + + R G   K   VM+ +++    P V+T
Sbjct: 127 NGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVIT 186

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN++I  + K+G I+   +   +M    + P+ +TY +++     +G + +   +L +  
Sbjct: 187 YNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 243

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
             +   D   +  +I A  +   V +  +L   M+ +   PD +T+  +I      G  +
Sbjct: 244 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLD 303

Query: 329 AAQNLENKM 337
            A    N M
Sbjct: 304 EAIKFLNNM 312



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E+A  L + M   GLKP +  Y++LVS   + G +DEA    +D++ +   +P
Sbjct: 471 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLG-IRP 529

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
           +  TY+ ++    K  + D     LA M     + +  TY  +I+G
Sbjct: 530 NAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEG 575



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 3/121 (2%)

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           + G +E   ++ + M +RG  P+ I   SL+  + + G   K   ++  +E S  + D  
Sbjct: 126 RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 185

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +N +IS Y ++G+++   ++   M   +  PD +T+ T+++     G  + A  + ++ 
Sbjct: 186 TYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQ 242

Query: 338 I 338
           +
Sbjct: 243 L 243


>gi|410110111|gb|AFV61135.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           duartei]
          Length = 381

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 134/268 (50%), Gaps = 5/268 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T++  Y + KKF E  S 
Sbjct: 37  PDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSV 96

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ ++ + N L + YG
Sbjct: 97  FSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYG 155

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            A ++ +   +   MQ++     VVTYN ++  +GK    EK     ++M+ RG++PNSI
Sbjct: 156 DAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSI 215

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +++S + K G + +   + +++ +S V +D   F  +I AY +AG V     L   +
Sbjct: 216 TYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 275

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
           K     PDNI   T I      G  E A
Sbjct: 276 KR----PDNIPRDTAIHILAGAGRIEEA 299



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +  LG     V YN +I+ +GKAK F E  S  
Sbjct: 3   DLVLYSNLIELSRKLCDYSKAISIFSRLKRLGFXPDLVAYNAMINVFGKAKLFREARSLI 62

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 63  GEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 121

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 122 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 181

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 182 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLR 241

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D I F TMI AY   G+   A+ L +++
Sbjct: 242 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 275



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+   
Sbjct: 26  IFSRLKRLGFXPDLVAYNAMINVFGKAKLFREARSLIGEMKT-AGVMPNTTSYSTLLTMY 84

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 85  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 143

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 144 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 200

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 201 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYE 260

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 261 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQXIDAGEVKDITVFER 320

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 321 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 376



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 142/339 (41%), Gaps = 39/339 (11%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K   +A  L   M + G+ P+   Y+ L++ Y ++    EA S  ++M+ +  C 
Sbjct: 48  VFGKAKLFREARSLIGEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIK-CL 106

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 107 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 166

Query: 123 FSAM----------------------------------VESGGCHPDIFTLNSMISAYGN 148
           F  M                                  ++S G  P+  T +++IS +G 
Sbjct: 167 FRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGK 226

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G +++    + +    GV+ D      +  +Y RAG+    + ++  +++    P  + 
Sbjct: 227 VGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKR----PDNIP 282

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
            +  I     AG IE+    F++    G   +   +  ++   SK      V  +  ++ 
Sbjct: 283 RDTAIHILAGAGRIEEATYVFRQXIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMR 342

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
                 D+     +++AYG+  + +K  ++++ M+E  C
Sbjct: 343 GLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEMQEVGC 381


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 168/378 (44%), Gaps = 56/378 (14%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  M   G+ P+V  Y  ++  Y   G   +A   + DM    +  PDV T+S L
Sbjct: 98  KAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIE-RNIDPDVVTFSAL 156

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I +  K  +    E++  EM    I  + +TY+++IDG+ K  + E+ +  F  MV S G
Sbjct: 157 INAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMV-SKG 215

Query: 132 CHPDIFTLNSMISA-----------YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           C PDI TLN++I             +   GN+   +  + E    GV  DI T N L   
Sbjct: 216 CSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAG 275

Query: 181 YGRAGMYDKMRSVMDFMQKRFF-----------------------------FPT------ 205
               G  +K   +    QK                                 P       
Sbjct: 276 LCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETD 335

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK----VD 261
           VVTYNI+I  F K G+  + E+ + +M  +G+ P+++TY S+V  + K   + +    VD
Sbjct: 336 VVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVD 395

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           S++ +  + DV+     F+ +I  Y +AG V+   ELF  M +R  V D IT+  +I  +
Sbjct: 396 SMVSEGCSPDVVT----FSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGF 451

Query: 322 NALGMTEAAQNLENKMIA 339
             +G    AQ++  +M++
Sbjct: 452 CKVGDLNGAQDIFEEMVS 469



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 148/333 (44%), Gaps = 15/333 (4%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C++    QA  L + M+ +G +P    Y  +V+   + G    A + +  M   S
Sbjct: 16  LMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDE-S 74

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             K +V  YS ++    K       + I  EM   GI  + +TYN +IDGY    K+ + 
Sbjct: 75  QIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDA 134

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E     M+E     PD+ T +++I+A+   G +   E+ Y E     +     T + +  
Sbjct: 135 EQLLRDMIER-NIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMID 193

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-----------TFGKAGHIEKMEEY 228
            + +    +  + + D M  +   P ++T N +I+            F + G++   ++ 
Sbjct: 194 GFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDL 253

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F++M   G+ P+ +T  +L++   + G + K   + +  + S + LDT   N II+   +
Sbjct: 254 FQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCK 313

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
              V++  +LF ++       D +T+  +I  +
Sbjct: 314 GNKVDEAWDLFNSLPVNGVETDVVTYNILIGVF 346



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 2/258 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  LF+ M+S+G+ P +     L++   ++G L++A       +  S    D  T +I+I
Sbjct: 250 AQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQK-SKMDLDTATCNIII 308

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K ++ D    +   +   G+E   VTYN +I  + K   F   E  +  M+   G 
Sbjct: 309 NGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEML-CKGI 367

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            P   T NSM+  +     +E+  +  +     G   D+ T + L K Y +AG  D    
Sbjct: 368 IPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLE 427

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   M +R      +TYN +I  F K G +   ++ F++M   G+ P++IT+ S+++   
Sbjct: 428 LFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLC 487

Query: 253 KAGLIMKVDSILRQVENS 270
               + K  ++L  ++ S
Sbjct: 488 TKAELQKGLTMLEDLQKS 505



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 133/303 (43%), Gaps = 15/303 (4%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSA-----------YGQSGLLDEAFST 51
           G CK    E A  +F++M+S G  P +     L+             + Q G ++ A   
Sbjct: 194 GFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDL 253

Query: 52  INDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 111
             +M S +   PD+ T + L+    +  + +   ++        ++    T N II+G  
Sbjct: 254 FQEMIS-NGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMC 312

Query: 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
           K  K +E    F+++    G   D+ T N +I  +   GN  + E  Y E    G+    
Sbjct: 313 KGNKVDEAWDLFNSL-PVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPST 371

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
            T N +   + +    ++ R ++D M      P VVT++ +I+ + KAG ++   E F +
Sbjct: 372 VTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSE 431

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M  RG+  ++ITY +L+  + K G +     I  ++ +S V  DT  F  +++      +
Sbjct: 432 MCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAE 491

Query: 292 VEK 294
           ++K
Sbjct: 492 LQK 494



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 118/260 (45%), Gaps = 12/260 (4%)

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M   G   + VT+ T+++G  +  +  +  +    MVE G   PD  T  ++++     G
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGH-QPDAVTYGTIVNGMCKLG 59

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           +         + +   +KA++   + +     + G + K +++   M ++  FP V+TYN
Sbjct: 60  DTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYN 119

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I+ +   G     E+  + M  R + P+ +T+ +L++A+ K G +   + + R++   
Sbjct: 120 CMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRR 179

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT-----------MIQ 319
           ++   T  ++ +I  + +   +E    +F  M  + C PD IT  T           +I 
Sbjct: 180 NIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIH 239

Query: 320 AYNALGMTEAAQNLENKMIA 339
            +  +G    AQ+L  +MI+
Sbjct: 240 GFCQVGNVNVAQDLFQEMIS 259



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 121/281 (43%), Gaps = 12/281 (4%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C  +V T++ L+    +  R      ++  M   G +  AVTY TI++G  K        
Sbjct: 6   CPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSAL 65

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +    M ES     ++   ++++      GN  K +  + E +  G+  ++ T N +   
Sbjct: 66  NMLRKMDES-QIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDG 124

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y   G +     ++  M +R   P VVT++ +I  F K G +   EE +++M  R + P 
Sbjct: 125 YCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPT 184

Query: 241 SITYCSLVSAYSKAGLIMKV----DSILRQVENSDVI-LDTPFFNC------IISAYGQA 289
           +ITY S++  + K   +       D ++ +  + D+I L+T    C      +I  + Q 
Sbjct: 185 TITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQV 244

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           G+V    +LF  M      PD +T  T++      G  E A
Sbjct: 245 GNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKA 285


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 167/367 (45%), Gaps = 37/367 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS----- 57
           ++G+    E+ S +FE M  + +K +V  +TAL++AYG++G  + +   +  MK      
Sbjct: 91  IMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEP 150

Query: 58  --------VSDC----------------------KPDVYTYSILIKSCTKFHRFDLIEKI 87
                   ++ C                      +PD+ TY+ L+ +C+     +    +
Sbjct: 151 NLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMV 210

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
              M+  G+   AVTY +++D +  + +   +E     M E  G  PDI   NS+I AY 
Sbjct: 211 FKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREM-EDEGNPPDIAGYNSLIEAYA 269

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
           ++GN+      + +    G   D++T + L + YG  G ++++RS+   M+     PTV 
Sbjct: 270 DAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVA 329

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TYN +I+ FG+ G+ ++    F  M   G+KP+  TY +L+S   + GL  +   I + +
Sbjct: 330 TYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHM 389

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM- 326
             ++          +IS+YG+    +     +  ++E    P    +  +IQ Y   G+ 
Sbjct: 390 LTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLY 449

Query: 327 TEAAQNL 333
            EA   L
Sbjct: 450 VEAGSTL 456



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 148/313 (47%), Gaps = 1/313 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+  +YT ++   G+ GLL++      DM   +D K +VY ++ LI +  +  +++   
Sbjct: 79  KPTEHIYTIMIGIMGREGLLEKCSEIFEDMPE-NDVKWNVYAFTALINAYGRNGQYEASL 137

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +LA M    +E + +TYNT+++   K     E   +  A +   G  PD+ T N+++SA
Sbjct: 138 HLLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSA 197

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
             + G +E+    +   N  GV AD  T   L  ++  +    ++  ++  M+     P 
Sbjct: 198 CSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPD 257

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           +  YN +IE +  AG++      FK+M+  G  P+  TY +L+  Y   G   +V S+  
Sbjct: 258 IAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFS 317

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            +++         +N +I  +G+ G  ++   LF  M +    PD+ T++ ++      G
Sbjct: 318 DMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGG 377

Query: 326 MTEAAQNLENKMI 338
           +T  A  +   M+
Sbjct: 378 LTREAAKIHQHML 390



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 133/285 (46%), Gaps = 2/285 (0%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           M+    CKP  + Y+I+I    +    +   +I  +M    ++ +   +  +I+ YG+  
Sbjct: 72  MQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNG 131

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQT 173
           ++ E      A ++     P++ T N++++A    G + E +   + +    G++ D+ T
Sbjct: 132 QY-EASLHLLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLIT 190

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L  +    G+ ++   V   M +       VTY  +++TF  +  + ++EE  ++M+
Sbjct: 191 YNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREME 250

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G  P+   Y SL+ AY+ AG +     + +Q++      D   ++ ++  YG  G  E
Sbjct: 251 DEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFE 310

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++  LF  MK+    P   T+ ++IQ +   G  + + NL + M+
Sbjct: 311 QVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMV 355



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 36/251 (14%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M     C P       MI   G  G +EK  + + +     VK ++     L  +YG
Sbjct: 69  FKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYG 128

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNS 241
           R G Y+    ++  M+K    P ++TYN V+    K G   E +   F +M+H G++P+ 
Sbjct: 129 RNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDL 188

Query: 242 ITYCSLVSAYSKAGLIM-----------------------------------KVDSILRQ 266
           ITY +L+SA S  GL+                                    +V+ +LR+
Sbjct: 189 ITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLRE 248

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +E+     D   +N +I AY  AG+V     +F  M+   C PD  T++T+++ Y   G 
Sbjct: 249 MEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGC 308

Query: 327 TEAAQNLENKM 337
            E  ++L + M
Sbjct: 309 FEQVRSLFSDM 319



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 142/327 (43%), Gaps = 7/327 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L   M  +G  P +  Y +L+ AY  +G +  A      M+    C PDV TYS L++  
Sbjct: 245 LLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQR-GGCAPDVETYSTLLRIY 303

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                F+ +  + ++M  L    +  TYN++I  +G+   F+E  + F  MV+SG   PD
Sbjct: 304 GNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSG-VKPD 362

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T ++++S  G  G   +  K +           ++    L  SYG+  MY        
Sbjct: 363 DATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYY 422

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            +++    P V  Y+ +I+ + K G   +       M   G +    +  S++ AYSK G
Sbjct: 423 RIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVG 482

Query: 256 L---IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           L    ++  S L+Q E S+V  D      ++  Y   G +E+  E F+ +KE   VP   
Sbjct: 483 LHDEALEFFSELQQKEGSEV--DERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGAR 540

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
            +  ++         + A  L ++MIA
Sbjct: 541 VYCLLLSLCVRRSKWDYATQLLDEMIA 567



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 152/368 (41%), Gaps = 47/368 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILI 72
           LF  M  +G++P +  Y  L+SA    GL+++A   F T+N+   V+D      TY  L+
Sbjct: 175 LFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVAD----AVTYKSLV 230

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
            +    ++   +E++L EM   G       YN++I+ Y  A         F  M + GGC
Sbjct: 231 DTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQM-QRGGC 289

Query: 133 HPDI-----------------------------------FTLNSMISAYGNSGNIEKMEK 157
            PD+                                    T NS+I  +G  G  ++   
Sbjct: 290 APDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQESIN 349

Query: 158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
            +++    GVK D  T + L    GR G+  +   +   M      P++     +I ++G
Sbjct: 350 LFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYG 409

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           K    +     + +++  G+ P    Y +L+  Y+K GL ++  S L  +  +       
Sbjct: 410 KMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVS 469

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQNLENK 336
             N ++ AY + G  ++  E F  ++++     D  T  T++  Y  +G+ E A+    +
Sbjct: 470 SVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDMGLLEEAK---EE 526

Query: 337 MIAMKENS 344
            + +KE S
Sbjct: 527 FVIIKETS 534



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 2/170 (1%)

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGH 221
           +L   K  +Q  +++ + +     + +   +  +MQ++ +  PT   Y I+I   G+ G 
Sbjct: 38  DLYRSKLTMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGL 97

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           +EK  E F+ M    +K N   + +L++AY + G       +L +++   V  +   +N 
Sbjct: 98  LEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNT 157

Query: 282 IISAYGQAG-DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +++A  + G D E +  LF  M+     PD IT+ T++ A ++ G+ E A
Sbjct: 158 VLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQA 207


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 149/307 (48%), Gaps = 2/307 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y  L+ AY + GLL+EAF  +N M      KP ++TY+ +I    K  R+   + IL EM
Sbjct: 4   YNTLIGAYCREGLLEEAFEIMNSMAD-KGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
             +G+     TYNT++    +   F E +  F  M+  G   PD+ + +S+++ +  + +
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQG-VVPDLVSFSSLMAVFSRNRH 121

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++   ++ +    G+  D     +L   Y R G   +   + D M ++     V+ YN 
Sbjct: 122 LDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNT 181

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           ++    K   +   ++ F +M  RG  P+  T+ +L+  + + G + K  S+   +   +
Sbjct: 182 ILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN 241

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           +  D   +N +I  + + G++EK  EL+  M  R   P++IT+  +I AY ++G    A 
Sbjct: 242 IKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAF 301

Query: 332 NLENKMI 338
            L + MI
Sbjct: 302 RLWDVMI 308



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 6/286 (2%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +++  C++    +A  +F  ML  G+ P +  +++L++ + ++  LD+A     DMK   
Sbjct: 77  LLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFG 136

Query: 60  DCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              PD   Y++L+   C   +  + + KI  EM   G     + YNTI++G  K K   +
Sbjct: 137 -LVPDNVIYTVLMHGYCRNGNMLEAL-KIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTD 194

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            +  F  MVE G   PD +T  ++I  +   GN+ K    +       +K DI   N L 
Sbjct: 195 ADKLFDEMVERGAL-PDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLI 253

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + + G  +K   + D M  R  FP  +TY I+I  +   GH+ +    +  M  +G+K
Sbjct: 254 DGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIK 313

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
           P  +T  +++  Y ++G   K D  L ++    V  D   +N +I+
Sbjct: 314 PTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 144/344 (41%), Gaps = 37/344 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-S 69
           E+A  +   M   GLKPS+  Y A+++   + G    A   + +M ++    PD  TY +
Sbjct: 18  EEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIG-LSPDTTTYNT 76

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           +L++SC +   F   ++I  EM   G+    V++++++  + + +  ++    F  M + 
Sbjct: 77  LLVESCRR-DNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKF 135

Query: 130 G----------------------------------GCHPDIFTLNSMISAYGNSGNIEKM 155
           G                                  GC  D+   N++++       +   
Sbjct: 136 GLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDA 195

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           +K ++E    G   D  T   L   + + G   K  S+   M +R   P +V YN +I+ 
Sbjct: 196 DKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDG 255

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           F K G +EK  E +  M  R + PN ITY  L++AY   G + +   +   +    +   
Sbjct: 256 FCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPT 315

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
               N +I  Y ++GD  K  E    M  +   PD+I++ T+I 
Sbjct: 316 LVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 2/230 (0%)

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           VTYNT+I  Y +    EE     ++M +  G  P +FT N++I+     G   + +    
Sbjct: 2   VTYNTLIGAYCREGLLEEAFEIMNSMADK-GLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E   +G+  D  T N L     R   + + + +   M ++   P +V+++ ++  F +  
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR 120

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
           H+++   YF+ MK  G+ P+++ Y  L+  Y + G +++   I  ++     +LD   +N
Sbjct: 121 HLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYN 180

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEA 329
            I++   +   +    +LF  M ER  +PD  TF T+I  +   G MT+A
Sbjct: 181 TILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKA 230



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 62/117 (52%)

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           +VTYN +I  + + G +E+  E    M  +G+KP+  TY ++++   K G   +   IL 
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILI 60

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           ++ N  +  DT  +N ++    +  +  +  E+F  M  +  VPD ++F++++  ++
Sbjct: 61  EMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFS 117


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 153/306 (50%), Gaps = 2/306 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  M + G+ P+V  YT+L+          EA + +N+M S+ +  PD+ T+S+LI   
Sbjct: 253 IFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSL-NIMPDIVTFSLLIDIF 311

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K       + +L  M+ +G+E + +TYN+++ GY    +  E    F  M+ + GC PD
Sbjct: 312 CKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMI-TRGCKPD 370

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +F+ + +I+ Y     I++ ++ +NE    G+  +  +   L  ++ + G   + R +  
Sbjct: 371 VFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFK 430

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M    + P + TY++++E F K G++ K    F+ M+   +KPN + Y  L+ +  K+G
Sbjct: 431 DMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSG 490

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +     +  ++    +  D   +  II+   + G +++  E F  M+E  C P+  ++ 
Sbjct: 491 NLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYN 550

Query: 316 TMIQAY 321
            +I+ +
Sbjct: 551 VIIRGF 556



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 157/331 (47%), Gaps = 4/331 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E  QA  LF+ M++ G +P V  YT +++   + G    A   I  M  V  C+
Sbjct: 170 GLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVG-CQ 228

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TYS LI S  K    +    I + M   GI  + V+Y ++I G     +++E  + 
Sbjct: 229 PDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAM 288

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M  S    PDI T + +I  +   GN+ + +        MGV+ ++ T N L   Y 
Sbjct: 289 LNEMT-SLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYS 347

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                 + R + D M  R   P V +Y+I+I  +     I++ ++ F +M H+G+ PN++
Sbjct: 348 LQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTV 407

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+ A+ + G + +   + + +  +  + D   ++ ++  + + G + K   LF  M
Sbjct: 408 SYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAM 467

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +  +  P+ + +  +I +    G    A+ L
Sbjct: 468 QGTYLKPNLVMYTILIDSMCKSGNLNHARKL 498



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 149/335 (44%), Gaps = 4/335 (1%)

Query: 5   GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E A+   L + M   G +P V  Y+ L+ +  +  L++EA    + MK+     
Sbjct: 205 GLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKA-KGIS 263

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V +Y+ LI+    F R+     +L EM+ L I    VT++ +ID + K     E +  
Sbjct: 264 PTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGV 323

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E G   P++ T NS++  Y     + +  K ++     G K D+ + +IL   Y 
Sbjct: 324 LKTMTEMG-VEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYC 382

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                D+ + + + M  +   P  V+Y  +I  F + G + +  E FK M   G  P+  
Sbjct: 383 MVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLC 442

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+  + K G + K   + R ++ + +  +   +  +I +  ++G++    +LF  +
Sbjct: 443 TYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSEL 502

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 PD   + T+I      G+ + A     KM
Sbjct: 503 FVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKM 537



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 149/322 (46%), Gaps = 1/322 (0%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  ML     P +  +  L+SA  +     +A  +++    ++   P+  T +ILI    
Sbjct: 78  FNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFC 137

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
                DL   +LA++  LG++ + +T+ T+I+G  KA +F +    F  MV + GC PD+
Sbjct: 138 LMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMV-ARGCQPDV 196

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
           +T  ++I+     G          +   +G + D+ T + L  S  +  + ++   +  +
Sbjct: 197 YTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSY 256

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M+ +   PTVV+Y  +I+        ++      +M    + P+ +T+  L+  + K G 
Sbjct: 257 MKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGN 316

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           +++   +L+ +    V  +   +N ++  Y    +V +  +LF  M  R C PD  +++ 
Sbjct: 317 VLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSI 376

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           +I  Y  +   + A+ L N+MI
Sbjct: 377 LINGYCMVKRIDEAKQLFNEMI 398



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 106/240 (44%), Gaps = 14/240 (5%)

Query: 108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN------- 160
           D     +  ++  +SF+ M+      P I   N ++SA      I +M ++Y+       
Sbjct: 63  DASSSFRNIDDALASFNHMLHRKPL-PCIIQFNKLLSA------IVRMRQYYDAVISLSK 115

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           +  L G+  +  TLNIL   +      D   SV+  + K    PT++T+  +I    KAG
Sbjct: 116 QMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAG 175

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
              +  E F  M  RG +P+  TY ++++   K G       +++++       D   ++
Sbjct: 176 EFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYS 235

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +I +  +   V +  ++F  MK +   P  +++ ++IQ   +    + A  + N+M ++
Sbjct: 236 TLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSL 295



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 98/240 (40%)

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           + +N ++    + +++ +   S S  +E  G  P+  TLN +I+ +    +++       
Sbjct: 91  IQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLA 150

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           +   +G++  I T   L     +AG + +   + D M  R   P V TY  +I    K G
Sbjct: 151 KVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMG 210

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
                    KKM   G +P+ +TY +L+ +  K  L+ +   I   ++   +      + 
Sbjct: 211 ETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYT 270

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +I         ++   +   M   + +PD +TF+ +I  +   G    AQ +   M  M
Sbjct: 271 SLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEM 330


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 138/309 (44%), Gaps = 2/309 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           +KP++  Y  ++ +  + GL+D+      +MK      PDV  YS +I       R++  
Sbjct: 234 IKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKG-RGISPDVVAYSSIIHGMCHTGRWEGA 292

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           + +  EM   G+  + VT+N +ID   KA K EE       M++ G   PD FT N++I 
Sbjct: 293 KGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGE-SPDTFTYNTLID 351

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
            +   G I+     +      G++ D  + N+L   Y ++G   + + +   M  +   P
Sbjct: 352 GFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMP 411

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           TV+TYN ++    + G +      F +MK   + P S TY  L+    K   + +   + 
Sbjct: 412 TVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELF 471

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             +EN D       FNC+I    +A  +E   ELF  +      P+ IT+  MI      
Sbjct: 472 HYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKS 531

Query: 325 GMTEAAQNL 333
           G  E A++L
Sbjct: 532 GQLENAKDL 540



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 143/311 (45%), Gaps = 8/311 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  LF  M+ +G+ P+V  +  L+ A  ++G ++EA   +  M    +  PD +TY+ 
Sbjct: 290 EGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGE-SPDTFTYNT 348

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       R D    +   M   GIE  AV+YN +I+GY K+ +  E +  +  M+   
Sbjct: 349 LIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMM--- 405

Query: 131 GCH---PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            C    P + T N++++     G +      + E  +  +  +  T NIL     +    
Sbjct: 406 -CKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHL 464

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            +   +  +++   F P++  +N +I+   KA  IE   E F ++ H G++PN ITY  +
Sbjct: 465 SEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVM 524

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +    K+G +     +   +E      +   FN ++  + Q  +++K+ EL   M E+  
Sbjct: 525 IHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDF 584

Query: 308 VPDNITFATMI 318
            PD  T + ++
Sbjct: 585 SPDASTISIVV 595



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 143/332 (43%), Gaps = 16/332 (4%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L++ M   GL P       L++ Y     +D   + + +M       P+  T++ L+K  
Sbjct: 114 LYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGH-SPNTVTFTSLVKGL 172

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG-------KAKKFEEM---ESSFSA 125
               R      +L +M  +G   + VTY T+++G           K  EEM      F  
Sbjct: 173 CLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGV 232

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
            ++     P++    ++I +    G I+K ++ + E    G+  D+   + +       G
Sbjct: 233 TIK-----PNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTG 287

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            ++  + + + M      P VVT+N++I+   KAG +E+     K M  RG  P++ TY 
Sbjct: 288 RWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYN 347

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L+  +   G I     +   +E+  +  D   +N +I+ Y ++G + +  +L+  M  +
Sbjct: 348 TLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCK 407

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +P  IT+ T++      G    A NL  +M
Sbjct: 408 EIMPTVITYNTLLTGLFREGKVRDAWNLFGEM 439



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 148/343 (43%), Gaps = 13/343 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS--DCK 62
           G  K+ E  S+ F  ++     P +  +  L+ A  +   +   F  I+  K +S     
Sbjct: 69  GHIKRSEAFSV-FNHLIDMQPTPPISSFNTLLGAVAK---IKRYFDVISLYKRMSLIGLA 124

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  T +ILI      ++ D    +L EM   G   + VT+ +++ G     +  E    
Sbjct: 125 PDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGL 184

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE-FNLMG-----VKADIQTLNI 176
              MV  G   P++ T  ++++    +GN     K + E  N  G     +K ++     
Sbjct: 185 LRKMVRMG-YRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCT 243

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +  S  + G+ DK + +   M+ R   P VV Y+ +I      G  E  +  F +M   G
Sbjct: 244 IIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEG 303

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + PN +T+  L+ A  KAG + + + +L+ +       DT  +N +I  +   G ++   
Sbjct: 304 VHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDAR 363

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +LF++M+ +    D +++  +I  Y   G    A+ L  +M+ 
Sbjct: 364 DLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMC 406



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 7/227 (3%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK     +A  L+  M+   + P+V  Y  L++   + G + +A++   +MK V D  
Sbjct: 387 GYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMK-VHDLT 445

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+  TY+IL+    K +      ++   +     + S   +N +IDG  KA+K E     
Sbjct: 446 PESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAREL 505

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ +   G   P++ T   MI     SG +E  +  +      G   ++ T N L + + 
Sbjct: 506 FNRLSHEG-LEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFC 564

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           +     K+  ++  M ++ F P   T +IV++   K    EK  EY 
Sbjct: 565 QNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKD---EKYREYL 608



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 7/248 (2%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           ++NT++    K K++ ++ S +  M    G  PD  TLN +I+ Y N   ++       E
Sbjct: 94  SFNTLLGAVAKIKRYFDVISLYKRM-SLIGLAPDFITLNILINCYCNLNKVDFGLAVLGE 152

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G   +  T   L K         +   ++  M +  + P VVTY  ++      G+
Sbjct: 153 MLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGN 212

Query: 222 ----IEKMEEYFKKMKHRG--MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
               ++  EE        G  +KPN + YC+++ +  K GLI K   +  +++   +  D
Sbjct: 213 TMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPD 272

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              ++ II      G  E    LF  M +    P+ +TF  +I A    G  E A +L  
Sbjct: 273 VVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLK 332

Query: 336 KMIAMKEN 343
            MI   E+
Sbjct: 333 LMIQRGES 340



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ E A  LF  +  +GL+P+V  YT ++    +SG L+ A      M+    C P
Sbjct: 493 LCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEE-KGCAP 551

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE---ME 120
           ++ T++ L++   +      + ++L EM+       A T + ++D   K +K+ E   + 
Sbjct: 552 NLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLL 611

Query: 121 SSFSAMVESG 130
            +F A  ++G
Sbjct: 612 PTFPAQGQTG 621


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 160/358 (44%), Gaps = 37/358 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+   +   M+  G  P + +Y  ++    + G L+ A   +N M S    KP+V  Y+ 
Sbjct: 279 ERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG-LKPNVVCYNT 337

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+K      R++  E++LAEM         VT+N ++D + +    + +      M+E G
Sbjct: 338 LLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERG 397

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKM-----------------------------EKWYNE 161
            C PD+ T  ++I+ +   G I++                              E+W + 
Sbjct: 398 -CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDA 456

Query: 162 FNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            +LM      G   +  T N L     + G+ ++   ++  M      P +++Y+ VI+ 
Sbjct: 457 EDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 516

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
            GKAG  ++  E    M ++GM PN+I Y S+ SA S+ G I KV  +   ++++ +  D
Sbjct: 517 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSD 576

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
              +N +IS+  + G+ E+  E    M    CVP+  T+  +I+   + G  + AQ +
Sbjct: 577 AVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEM 634



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 151/339 (44%), Gaps = 37/339 (10%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           +++A    G +DEA   + D+ S   C+PDV +Y+ ++K      R+  +++++ EM  +
Sbjct: 198 VLNAICDQGSVDEALHLLRDLPSFG-CEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRM 256

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
               + VT+NT+I    +   FE +    + MVE G C PDI    ++I      G++E 
Sbjct: 257 ACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHG-CTPDIRMYATIIDGICKEGHLEV 315

Query: 155 MEKWYNEFNLMGVKADIQ-----------------------------------TLNILTK 179
             +  N     G+K ++                                    T NIL  
Sbjct: 316 AHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVD 375

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + + G+ D++  +++ M +R   P V+TY  VI  F K G I++     K M   G KP
Sbjct: 376 FFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKP 435

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N+I+Y  ++     A   +  + ++ Q+      L+   FN +I+   + G VE+  EL 
Sbjct: 436 NTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELL 495

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M    C PD I+++T+I      G T+ A  L N M+
Sbjct: 496 KQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMV 534



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 141/315 (44%), Gaps = 2/315 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           + P+   Y  +V A    G + +A + +++M     C P    Y +++++  +   F   
Sbjct: 118 VPPNAYTYFPVVRALCARGRIADALAVLDEMPR-RGCAPIPPMYHVILEAACRGGGFRSA 176

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            ++L ++   G        N +++        +E       +  S GC PD+ + N+++ 
Sbjct: 177 VRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDL-PSFGCEPDVVSYNAVLK 235

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               +     +++   E   M    +I T N L     R G+++++  V+  M +    P
Sbjct: 236 GLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTP 295

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            +  Y  +I+   K GH+E   E   +M   G+KPN + Y +L+     A    + + +L
Sbjct: 296 DIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELL 355

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++ + D  LD   FN ++  + Q G V+++ EL   M ER C+PD IT+ T+I  +   
Sbjct: 356 AEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKE 415

Query: 325 GMTEAAQNLENKMIA 339
           G+ + A  L   M A
Sbjct: 416 GLIDEAVMLLKSMTA 430



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 118/252 (46%), Gaps = 2/252 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L E ML  G  P V  YT +++ + + GL+DEA   +  M +   CKP+  +Y+I++K  
Sbjct: 389 LLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG-CKPNTISYTIVLKGL 447

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               R+   E ++++M   G   + +T+NT+I+   K    E+       M+ +G C PD
Sbjct: 448 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG-CSPD 506

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + + +++I   G +G  ++  +  N     G+  +    + +  +  R G  +K+  + D
Sbjct: 507 LISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFD 566

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            +Q        V YN VI +  K G  E+  E+   M   G  PN  TY  L+   +  G
Sbjct: 567 NIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEG 626

Query: 256 LIMKVDSILRQV 267
            + +   +L ++
Sbjct: 627 FVKEAQEMLTEL 638



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 4/235 (1%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           YN ++ GY +A + E      +A+       P+ +T   ++ A    G I       +E 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVPVP----PNAYTYFPVVRALCARGRIADALAVLDEM 148

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              G        +++ ++  R G +     V++ +  R     V   N+V+      G +
Sbjct: 149 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 208

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           ++     + +   G +P+ ++Y +++     A     V  ++ ++       +   FN +
Sbjct: 209 DEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 268

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           IS   + G  E++ E+   M E  C PD   +AT+I      G  E A  + N+M
Sbjct: 269 ISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 323



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 3/166 (1%)

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N +   Y RAG  +  R +   +      P   TY  V+      G I        +M  
Sbjct: 94  NAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 150

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           RG  P    Y  ++ A  + G       +L  +      LD    N +++A    G V++
Sbjct: 151 RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDE 210

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
              L   +    C PD +++  +++           Q L  +M+ M
Sbjct: 211 ALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRM 256



 Score = 41.6 bits (96), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 1/128 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + ++A  L  VM++ G+ P+  +Y+++ SA  + G +++     ++++  +  + 
Sbjct: 517 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTT-IRS 575

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   Y+ +I S  K    +   + LA M   G   +  TY  +I G       +E +   
Sbjct: 576 DAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEML 635

Query: 124 SAMVESGG 131
           + +   G 
Sbjct: 636 TELCSKGA 643


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 158/317 (49%), Gaps = 4/317 (1%)

Query: 26  KPSVDVYT--ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           +   DVY+    + A+ ++G + + F  +  M+++    P+V+ Y+ILI++C +    D 
Sbjct: 102 RTQFDVYSFGITIKAFCENGNVSKGFELLAQMETMG-VSPNVFIYTILIEACCRNGDIDQ 160

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            + + + M  LG+  +   Y  +I+G+ K K +++        ++  G  P+++T NS+I
Sbjct: 161 AKVMFSRMDDLGLAANQYIYTIMINGFFK-KGYKKDGFELYQKMKLVGVLPNLYTYNSLI 219

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           + Y   G +    K ++E +  GV  +  T NIL     R G   K   +++ M++    
Sbjct: 220 TEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHIN 279

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT  T+N++++     G ++K   Y +K+K  G+ P  +TY  L+S +SK G    V  +
Sbjct: 280 PTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSEL 339

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           +R++E+  +      +  +++ + ++ D+EK  E+F  MK    VPD  T+  +I     
Sbjct: 340 VREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCI 399

Query: 324 LGMTEAAQNLENKMIAM 340
            G    A  L   M+ M
Sbjct: 400 KGNMVEASKLYKSMVEM 416



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 153/327 (46%), Gaps = 2/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA ++F  M   GL  +  +YT +++ + + G   + F     MK V    P++YTY+ 
Sbjct: 159 DQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVG-VLPNLYTYNS 217

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  +  L  K+  E+S  G+ C+AVTYN +I G  +  +  + E     M +  
Sbjct: 218 LITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERM-KRA 276

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
             +P   T N ++    N+G ++K   +  +  L+G+   + T NIL   + + G    +
Sbjct: 277 HINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVV 336

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M+ R   P+ VTY I++ TF ++  IEK  E F  MK  G+ P+  TY  L+  
Sbjct: 337 SELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHG 396

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G +++   + + +    +  +   +N +I+ Y +  +  K  +    M +    P+
Sbjct: 397 LCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPN 456

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
             ++ + IQ     G +  A+ L  +M
Sbjct: 457 VASYISTIQILCKDGKSIEAKRLLKEM 483



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 4/237 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  Q  +A  L E M    + P+   +  L+     +G LD+A S +  +K +  C 
Sbjct: 256 GLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLC- 314

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P + TY+ILI   +K     ++ +++ EM   GI  S VTY  +++ + ++   E+    
Sbjct: 315 PTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEM 374

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  G  PD  T   +I      GN+ +  K Y     M ++ +    N +   Y 
Sbjct: 375 FHLM-KRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYC 433

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +     K    ++ M K    P V +Y   I+   K G   + +   K+M   G+KP
Sbjct: 434 KECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKP 490


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 155/328 (47%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA  L + M + G KP V  Y  L++   + G LDEA   +N+M S   C+P+V T++I+
Sbjct: 100 QAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG-CQPNVITHNII 158

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           ++S     R+   EK+L++M   G   S VT+N +I+   +             M    G
Sbjct: 159 LRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM-PMHG 217

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  + N ++  +     +++  ++ +     G   DI T N L  +  + G  D   
Sbjct: 218 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 277

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +++ +  +   P ++TYN VI+   K G  E+  +   +M+ +G+KP+ ITY SLVS  
Sbjct: 278 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 337

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           S+ G + +       +E   +  +   +N I+    ++   ++  +    M  + C P  
Sbjct: 338 SREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 397

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
            T+  +I+     G+ + A +L N++ +
Sbjct: 398 ATYTILIEGIAYEGLAKEALDLLNELCS 425



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 1/106 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E+A  L + M   GLKP +  Y++LVS   + G +DEA    +D++ +   +P
Sbjct: 302 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLG-IRP 360

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
           +  TY+ ++    K  + D     LA M     + +  TY  +I+G
Sbjct: 361 NAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEG 406



 Score = 37.7 bits (86), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 2/143 (1%)

Query: 197 MQKRFFFP--TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + ++  FP  ++  ++  ++T  K   + +  +   +M+++G KP+ +TY  L++   K 
Sbjct: 71  INQQTLFPCFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKE 130

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G + +    L  + +     +    N I+ +    G      +L   M  + C P  +TF
Sbjct: 131 GRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTF 190

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
             +I      G+   A ++  KM
Sbjct: 191 NILINFLCRQGLLGRAIDILEKM 213


>gi|410110085|gb|AFV61122.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           fucata]
          Length = 382

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTL 81

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S + +D   F  +I AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAY 260

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 261 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 135/274 (49%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  GEM-KAAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D I F TMI AY   G+   A+ L +++
Sbjct: 243 SSGIEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+   
Sbjct: 27  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA-AGVMPNTTSYSTLLTMY 85

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 144

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 145 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYE 261

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 321

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 322 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 377



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 31/262 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 179

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K       F+
Sbjct: 180 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 239

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        F  M+   E  G              PD    ++ I     +G IE+
Sbjct: 240 KLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEE 299

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +     +   Y  +  V D M+   +FP      IV+ 
Sbjct: 300 ATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 359

Query: 215 TFGKAGHIEKMEEYFKKMKHRG 236
            +GK    +K  + + +M+  G
Sbjct: 360 AYGKLQEFDKANDVYMEMQEVG 381


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 155/325 (47%), Gaps = 2/325 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +  +A  L + M+  G +P++  Y  +V+   + G  D A + +N M++ +  + DV  +
Sbjct: 167 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEA-AKIEADVVIF 225

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I S  K+   D    +  EM   GI  + VTY+++I       ++ +     S M+E
Sbjct: 226 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 285

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
               +P++ T N++I A+   G   + EK Y++     +  DI T N L   +      D
Sbjct: 286 KK-INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 344

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K + + +FM  +  FP VVTYN +I+ F K+  +E   E F++M HRG+  +++TY +L+
Sbjct: 345 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 404

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                 G       + +Q+ +  V  D   ++ ++      G +EK  E+F  M++    
Sbjct: 405 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 464

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
            D   + TMI+     G  +   +L
Sbjct: 465 LDIYIYTTMIEGMCKAGKVDDGWDL 489



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 141/304 (46%), Gaps = 2/304 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            AS L   M+   + P++  + AL+ A+ + G   EA    +DM   S   PD++TY+ L
Sbjct: 275 DASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS-IDPDIFTYNSL 333

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +       R D  +++   M         VTYNT+I G+ K+K+ E+    F  M   G 
Sbjct: 334 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG- 392

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              D  T  ++I    + G+ +  +K + +    GV  DI T +IL       G  +K  
Sbjct: 393 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 452

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V D+MQK      +  Y  +IE   KAG ++   + F  +  +G+KPN +TY +++S  
Sbjct: 453 EVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 512

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
               L+ +  ++L++++    + ++  +N +I A+ + GD     EL   M+    V D 
Sbjct: 513 CSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 572

Query: 312 ITFA 315
            T  
Sbjct: 573 STIG 576



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 160/339 (47%), Gaps = 4/339 (1%)

Query: 1   MVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G CK+ +   A  L   M +  ++  V ++  ++ +  +   +D+A +   +M++ 
Sbjct: 192 VVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET- 250

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              +P+V TYS LI     + R+    ++L++M    I  + VT+N +ID + K  KF E
Sbjct: 251 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 310

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E  +  M++     PDIFT NS+++ +     ++K ++ +          D+ T N L 
Sbjct: 311 AEKLYDDMIKRS-IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLI 369

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           K + ++   +    +   M  R      VTY  +I+     G  +  ++ FK+M   G+ 
Sbjct: 370 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 429

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ +TY  L+      G + K   +   ++ S++ LD   +  +I    +AG V+   +L
Sbjct: 430 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 489

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           F ++  +   P+ +T+ TMI    +  + + A  L  KM
Sbjct: 490 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 528



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 37/332 (11%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+   A  L + M+  G +P    +T L+          EA + ++ M     C+P++ T
Sbjct: 131 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVT 189

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y +++    K    DL   +L +M    IE   V +NTIID   K +  ++  + F  M 
Sbjct: 190 YGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM- 248

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+ G  P++ T +S+IS   + G      +W +   L+                      
Sbjct: 249 ETKGIRPNVVTYSSLISCLCSYG------RWSDASQLLS--------------------- 281

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                  D ++K+   P +VT+N +I+ F K G   + E+ +  M  R + P+  TY SL
Sbjct: 282 -------DMIEKKIN-PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSL 333

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           V+ +     + K   +   + + D   D   +N +I  + ++  VE   ELF  M  R  
Sbjct: 334 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL 393

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           V D +T+ T+IQ     G  + AQ +  +M++
Sbjct: 394 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 425



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 138/306 (45%), Gaps = 2/306 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M+     PS+  +  L+SA  +    D   S    M+ + +    +YTY+ILI   
Sbjct: 34  LFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRL-EIVHGLYTYNILINCF 92

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +  L   +L +M  LG E S VT +++++GY   K+  +  +    MVE  G  PD
Sbjct: 93  CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM-GYRPD 151

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T  ++I          +     +     G + ++ T  ++     + G  D   ++++
Sbjct: 152 TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLN 211

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+       VV +N +I++  K  H++     FK+M+ +G++PN +TY SL+S     G
Sbjct: 212 KMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYG 271

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
                  +L  +    +  +   FN +I A+ + G   +  +L+  M +R   PD  T+ 
Sbjct: 272 RWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYN 331

Query: 316 TMIQAY 321
           +++  +
Sbjct: 332 SLVNGF 337



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 1/245 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S V +N ++    K KKF+ + S    M      H  ++T N +I+ +     I      
Sbjct: 46  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHG-LYTYNILINCFCRRSQISLALAL 104

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             +   +G +  I TL+ L   Y          +++D M +  + P  +T+  +I     
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 164

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
                +      +M  RG +PN +TY  +V+   K G      ++L ++E + +  D   
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 224

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           FN II +  +   V+    LF  M+ +   P+ +T++++I    + G    A  L + MI
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 339 AMKEN 343
             K N
Sbjct: 285 EKKIN 289


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 153/327 (46%), Gaps = 2/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A  LF+ M   G+KPS++ Y +L+  Y + G +DEA    ++M  +   KP+V TY  
Sbjct: 418 REALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEM-PMEGFKPNVVTYIT 476

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L++       FD    +L EM   G+ C+  TYN +I+G     +  E++    + + S 
Sbjct: 477 LMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFM-SE 535

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P + T NS+I+ +  +G +      Y +    G+  +I T       Y R G  D  
Sbjct: 536 GFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMA 595

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ +++R   P +V YN +I  F + G++    +    +   G+ PN++ Y SL++ 
Sbjct: 596 LKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITG 655

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y    ++ +V      +    ++ DT  +  +I  + + G+V    EL+  M  +  +PD
Sbjct: 656 YKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPD 715

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
             TF  +       G  + A+ L  +M
Sbjct: 716 AFTFTALTHGLCRSGDIDGAKKLLEEM 742



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 158/374 (42%), Gaps = 40/374 (10%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C + E   A  LF+  L DG+ P+  +Y  L+    Q G+  +A+     M    
Sbjct: 303 LMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTG-Q 361

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P  +  S+++K      R+     +  EM+  G+     TYN +I  + +A K  E 
Sbjct: 362 GLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGLP-DVFTYNNLIHWHCQAHKLREA 420

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            + F  M +  G  P I T NS++  Y   G +++  K Y+E  + G K ++ T   L +
Sbjct: 421 LNLFDRM-KKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMR 479

Query: 180 SYGRAGMYDKMRSVMDFMQ-------------------------------KRF----FFP 204
            Y     +D   +++D M+                               K F    F P
Sbjct: 480 GYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIP 539

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           T++TYN +I  F KAG +      +++M+ +G+ PN ITY S +  Y + G       +L
Sbjct: 540 TMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKML 599

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             V    +  D   +N +I+ + Q G++    +L + + +    P+ + + ++I  Y  L
Sbjct: 600 NDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNL 659

Query: 325 GMTEAAQNLENKMI 338
            M +        MI
Sbjct: 660 NMMKEVSKFYESMI 673



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 2/234 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +++ M   GL P++  YT+ +  Y ++G  D A   +ND++     +PD+  Y+ LI   
Sbjct: 563 VYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRR-RGLQPDIVAYNALINGF 621

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +        ++L  +   G+  + V YN++I GY      +E+   + +M++ GG   D
Sbjct: 622 CQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIK-GGIVAD 680

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T  ++I  +   GN+    + Y+E    G   D  T   LT    R+G  D  + +++
Sbjct: 681 TSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLE 740

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
            M++    P V  YN++I  + +   +++      +M + G++P+  TY  LVS
Sbjct: 741 EMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILVS 794



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 147/354 (41%), Gaps = 39/354 (11%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +++G CK+   ++A  L+  M  +G KP+V  Y  L+  Y      D A++ +++MK  +
Sbjct: 442 LLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQ-N 500

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
               + YTY++LI       R   ++ +L      G   + +TYN+II+G+ KA      
Sbjct: 501 GVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSA 560

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            + +  M E G   P+I T  S I  Y  +G  +   K  N+    G++ DI   N L  
Sbjct: 561 FTVYQQMREKG-LPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALIN 619

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN----------------------------- 210
            + + G       ++  + K    P  V YN                             
Sbjct: 620 GFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVA 679

Query: 211 ------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
                  +I+ F K G++    E + +M  +G  P++ T+ +L     ++G I     +L
Sbjct: 680 DTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLL 739

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
            ++   DV  +   +N +I+ Y +   +++   L   M      PD+ T+  ++
Sbjct: 740 EEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILV 793



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/323 (18%), Positives = 137/323 (42%), Gaps = 3/323 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++   +    + A  LF  M   G +    ++ AL+SA  + G+ ++A    ++M   ++
Sbjct: 164 LIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPG-AE 222

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD   Y++ I +  K        ++L EM  +G +    TY T++D   K  + EE  
Sbjct: 223 IDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEAL 282

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M ++G    D+    +++  Y     +      + E    G+        +L + 
Sbjct: 283 RVNDEMRDAGK-KMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRG 341

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             + GM  K   +   M  +   P+    ++V++        +     F++M   G+ P+
Sbjct: 342 CDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PD 400

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY +L+  + +A  + +  ++  +++ + V      +N ++  Y + G +++  +L+ 
Sbjct: 401 VFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYS 460

Query: 301 TMKERHCVPDNITFATMIQAYNA 323
            M      P+ +T+ T+++ Y A
Sbjct: 461 EMPMEGFKPNVVTYITLMRGYIA 483



 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 41/216 (18%), Positives = 84/216 (38%), Gaps = 1/216 (0%)

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           +++ MV + G  PDI +   ++       + +     + E    G + D    + L  + 
Sbjct: 144 TYAHMV-ARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSAC 202

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + GM++    + D M      P    Y + I    K G   +     ++MK  G     
Sbjct: 203 LKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCD 262

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY ++V    K G + +   +  ++ ++   +D      ++  Y    +V     LF  
Sbjct: 263 FTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKE 322

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   VP  + +  +I+  + +GMT+ A  L  +M
Sbjct: 323 TLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQM 358


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 3/335 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  +PE A   F  +L  GL+  + +   L+  + ++   DEA   +        C PDV
Sbjct: 127 RAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDV 186

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSF 123
           ++YSIL+KS     +    + +L  M+  G  CS   V Y T+ID + K     +    F
Sbjct: 187 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLF 246

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+ G   PD+ T +S++ A   +  + K E +  +    GV  D  T N L   Y  
Sbjct: 247 KEMVQRG-IPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSS 305

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +   V   M++    P VVT N+++ +  K G I++  + F  M  +G  P+  +
Sbjct: 306 TGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 365

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +++ Y+  G ++ +  +   +    +  D   F+ +I AY   G ++K   +F  M+
Sbjct: 366 YKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMR 425

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +    PD +T+ T+I A   +G  + A    N+MI
Sbjct: 426 DHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMI 460



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 158/331 (47%), Gaps = 8/331 (2%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF+ M+  G+ P +  Y+++V A  ++  + +A + +  M +     PD +TY+ L
Sbjct: 241 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVN-KGVLPDNWTYNNL 299

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I   +   ++    ++  EM    I    VT N ++    K  K +E    F  M   G 
Sbjct: 300 IYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQ 359

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
            +PD+F+   M++ Y   G +  M   ++     G+  DI T ++L K+Y   GM DK  
Sbjct: 360 -NPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAM 418

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 419 IIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF 478

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIIS---AYGQAGDVEKMGELFLTMKERHCV 308
              G ++K   ++ ++ N+ + LD  FF+ II+     G+  D + + +L + + +    
Sbjct: 479 CTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQH--- 535

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           PD + ++ ++  Y  +G  E A  + + M++
Sbjct: 536 PDAVVYSMLMDGYCLVGKMEKALRVFDAMVS 566



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 145/335 (43%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +   +A      M++ G+ P    Y  L+  Y  +G   EA     +M+  S   P
Sbjct: 268 LCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS-ILP 326

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T ++L+ S  K+ +      +   M+  G      +Y  +++GY       +M   F
Sbjct: 327 DVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLF 386

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+   G  PDI+T + +I AY N G ++K    +NE    GVK D+ T   +  +  R
Sbjct: 387 DLML-GDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCR 445

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D      + M  +   P    Y+ +I+ F   G + K +E   ++ + GM+ + + 
Sbjct: 446 IGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVF 505

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + S+++   K G IM   +I     N     D   ++ ++  Y   G +EK   +F  M 
Sbjct: 506 FSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 565

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                P+ + + T++  Y  +G  +   +L  +M+
Sbjct: 566 SAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREML 600



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 125/279 (44%), Gaps = 34/279 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +TY+IL+  CT+ HR +L      ++   G+    +  N ++ G+ +AK+ +E    
Sbjct: 113 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDI 172

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
                   GC PD+F+ + ++ +  +                                 G
Sbjct: 173 LLHRTPELGCVPDVFSYSILLKSLCDQ--------------------------------G 200

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G  D +  +M         P VV Y  VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 201 KSGQADDLLRMMA-EGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLV 259

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S+V A  KA  + K ++ LRQ+ N  V+ D   +N +I  Y   G  ++   +F  M
Sbjct: 260 TYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 319

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +    +PD +T   ++ +    G  + A+++ + M AMK
Sbjct: 320 RRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTM-AMK 357



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 145/323 (44%), Gaps = 4/323 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           M+M   CK  + ++A  +F+ M   G  P V  Y  +++ Y   G L +  + + D+   
Sbjct: 333 MLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVD-MTDLFDLMLG 391

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PD+YT+S+LIK+       D    I  EM   G++   VTY T+I    +  K ++
Sbjct: 392 DGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDD 451

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F+ M++ G   PD +  + +I  +   G++ K ++   E    G++ DI   + + 
Sbjct: 452 AMEKFNQMIDQG-VAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSII 510

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +  + G     +++ D        P  V Y+++++ +   G +EK    F  M   G++
Sbjct: 511 NNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE 570

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN + Y +LV+ Y K G I +  S+ R++    +   T  +N II     AG        
Sbjct: 571 PNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVK 630

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
           F  M E     +  T+  +++ +
Sbjct: 631 FHEMTESGIAINKCTYNIVLRGF 653



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 144/321 (44%), Gaps = 8/321 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF++ML DG+ P +  ++ L+ AY   G+LD+A    N+M+     KPDV TY+ +I + 
Sbjct: 385 LFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRD-HGVKPDVVTYTTVIAAL 443

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESGGC 132
            +  + D   +   +M   G+      Y+ +I G+   G   K +E+       + + G 
Sbjct: 444 CRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILE----IMNNGM 499

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             DI   +S+I+     G I   +  ++    +G   D    ++L   Y   G  +K   
Sbjct: 500 RLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALR 559

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V D M      P VV Y  ++  + K G I++    F++M  +G+KP++I Y  ++    
Sbjct: 560 VFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 619

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
            AG  +       ++  S + ++   +N ++  + +    ++   LF  ++  +   D I
Sbjct: 620 VAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDII 679

Query: 313 TFATMIQAYNALGMTEAAQNL 333
           T  TMI         E A++L
Sbjct: 680 TLNTMIAGMFQTRRVEEAKDL 700


>gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Glycine max]
          Length = 503

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 152/334 (45%), Gaps = 5/334 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G +P   VY AL++A+     ++  L +A      MK +
Sbjct: 118 VMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLHSRDKTKALAKAIGYFQKMKGM 177

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             CKP++ TY+IL+++  +    + +  +  ++    +     T+N ++D YGK     E
Sbjct: 178 ERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIRE 237

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           ME+  + M +S  C PD+ T N +I +YG      KME+ +        +A + T N + 
Sbjct: 238 MEAVLARM-KSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFKSLLRSKERASLPTFNSMI 296

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A + DK   V   M    + P+ VT+  +I  +G    + +  + F ++      
Sbjct: 297 LNYGKARLKDKAEDVFKRMTDMGYTPSFVTHESLIYMYGFCDCVSRAAQLFDELVESKAH 356

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
               T  +++  Y   GL  + DS+  +  +  +  D+  F  +  AY +A   E + +L
Sbjct: 357 IKVSTLNAMLDVYCINGLPQEADSLFERANSIKIYPDSSTFKLLYKAYTKANQKELLDKL 416

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
              M +   VP+   F   + A  +L     + N
Sbjct: 417 LKHMDKDGIVPNKRFFLDALGAVASLPANSESAN 450



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 141/305 (46%), Gaps = 11/305 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +Y+ L+S  G+ G    A    ++M++   C+PD   Y+ LI +    H  D  + +   
Sbjct: 111 IYSKLISVMGKKGQTRMAMWLFSEMRNTG-CRPDTSVYNALITA--HLHSRDKTKALAKA 167

Query: 91  MSYL----GIE-CSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + Y     G+E C    VTYN ++  + +A+  E++ S F  + ES    PDI+T N ++
Sbjct: 168 IGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESI-VSPDIYTFNGVM 226

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AYG +G I +ME           K D+ T N+L  SYG+   + KM  V   + +    
Sbjct: 227 DAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFKSLLRSKER 286

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
            ++ T+N +I  +GKA   +K E+ FK+M   G  P+ +T+ SL+  Y     + +   +
Sbjct: 287 ASLPTFNSMILNYGKARLKDKAEDVFKRMTDMGYTPSFVTHESLIYMYGFCDCVSRAAQL 346

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             ++  S   +     N ++  Y   G  ++   LF         PD+ TF  + +AY  
Sbjct: 347 FDELVESKAHIKVSTLNAMLDVYCINGLPQEADSLFERANSIKIYPDSSTFKLLYKAYTK 406

Query: 324 LGMTE 328
               E
Sbjct: 407 ANQKE 411


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 155/325 (47%), Gaps = 2/325 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +  +A  L + M+  G +P++  Y  +V+   + G  D A + +N M++ +  + DV  +
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEA-AKIEADVVIF 263

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I S  K+   D    +  EM   GI  + VTY+++I       ++ +     S M+E
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
               +P++ T N++I A+   G   + EK Y++     +  DI T N L   +      D
Sbjct: 324 KK-INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K + + +FM  +  FP VVTYN +I+ F K+  +E   E F++M HRG+  +++TY +L+
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                 G       + +Q+ +  V  D   ++ ++      G +EK  E+F  M++    
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 502

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
            D   + TMI+     G  +   +L
Sbjct: 503 LDIYIYTTMIEGMCKAGKVDDGWDL 527



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 141/304 (46%), Gaps = 2/304 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            AS L   M+   + P++  + AL+ A+ + G   EA    +DM   S   PD++TY+ L
Sbjct: 313 DASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS-IDPDIFTYNSL 371

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +       R D  +++   M         VTYNT+I G+ K+K+ E+    F  M   G 
Sbjct: 372 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG- 430

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              D  T  ++I    + G+ +  +K + +    GV  DI T +IL       G  +K  
Sbjct: 431 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 490

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V D+MQK      +  Y  +IE   KAG ++   + F  +  +G+KPN +TY +++S  
Sbjct: 491 EVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 550

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
               L+ +  ++L++++    + ++  +N +I A+ + GD     EL   M+    V D 
Sbjct: 551 CSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 610

Query: 312 ITFA 315
            T  
Sbjct: 611 STIG 614



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 160/339 (47%), Gaps = 4/339 (1%)

Query: 1   MVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G CK+ +   A  L   M +  ++  V ++  ++ +  +   +D+A +   +M++ 
Sbjct: 230 VVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET- 288

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              +P+V TYS LI     + R+    ++L++M    I  + VT+N +ID + K  KF E
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E  +  M++     PDIFT NS+++ +     ++K ++ +          D+ T N L 
Sbjct: 349 AEKLYDDMIKRS-IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLI 407

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           K + ++   +    +   M  R      VTY  +I+     G  +  ++ FK+M   G+ 
Sbjct: 408 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 467

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ +TY  L+      G + K   +   ++ S++ LD   +  +I    +AG V+   +L
Sbjct: 468 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 527

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           F ++  +   P+ +T+ TMI    +  + + A  L  KM
Sbjct: 528 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 566



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 37/332 (11%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+   A  L + M+  G +P    +T L+          EA + ++ M     C+P++ T
Sbjct: 169 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVT 227

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y +++    K    DL   +L +M    IE   V +NTIID   K +  ++  + F  M 
Sbjct: 228 YGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM- 286

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+ G  P++ T +S+IS   + G      +W +   L+                      
Sbjct: 287 ETKGIRPNVVTYSSLISCLCSYG------RWSDASQLLS--------------------- 319

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                  D ++K+   P +VT+N +I+ F K G   + E+ +  M  R + P+  TY SL
Sbjct: 320 -------DMIEKKIN-PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSL 371

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           V+ +     + K   +   + + D   D   +N +I  + ++  VE   ELF  M  R  
Sbjct: 372 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL 431

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           V D +T+ T+IQ     G  + AQ +  +M++
Sbjct: 432 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 463



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 138/306 (45%), Gaps = 2/306 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M+     PS+  +  L+SA  +    D   S    M+ + +    +YTY+ILI   
Sbjct: 72  LFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRL-EIVHGLYTYNILINCF 130

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +  L   +L +M  LG E S VT +++++GY   K+  +  +    MVE  G  PD
Sbjct: 131 CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM-GYRPD 189

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T  ++I          +     +     G + ++ T  ++     + G  D   ++++
Sbjct: 190 TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLN 249

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+       VV +N +I++  K  H++     FK+M+ +G++PN +TY SL+S     G
Sbjct: 250 KMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYG 309

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
                  +L  +    +  +   FN +I A+ + G   +  +L+  M +R   PD  T+ 
Sbjct: 310 RWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYN 369

Query: 316 TMIQAY 321
           +++  +
Sbjct: 370 SLVNGF 375



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 1/245 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S V +N ++    K KKF+ + S    M      H  ++T N +I+ +     I      
Sbjct: 84  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVH-GLYTYNILINCFCRRSQISLALAL 142

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             +   +G +  I TL+ L   Y          +++D M +  + P  +T+  +I     
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
                +      +M  RG +PN +TY  +V+   K G      ++L ++E + +  D   
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           FN II +  +   V+    LF  M+ +   P+ +T++++I    + G    A  L + MI
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 339 AMKEN 343
             K N
Sbjct: 323 EKKIN 327


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 2/311 (0%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           ++ ++A  LF  M  D   P+V  YT ++ A  Q G   EA +   +M     C+P+V+T
Sbjct: 288 RRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTE-KHCQPNVHT 346

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y++LI S  +   FD  +KIL  M   G+  S VTYN +IDGY K K          +++
Sbjct: 347 YTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCK-KGLSASALEILSLM 405

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           ES  C P+  T N +I  +    NI K     ++     ++ ++ T NIL     + G  
Sbjct: 406 ESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDL 465

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                ++  M +    P   TY++ I+T  K G +E+    F+ +K +G+K N + Y +L
Sbjct: 466 GSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTL 525

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  Y K G +     +L ++ ++  + ++  +N +I  Y +  + ++   L   M +R  
Sbjct: 526 IDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDI 585

Query: 308 VPDNITFATMI 318
            P   T+  +I
Sbjct: 586 EPAADTYTILI 596



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 133/320 (41%), Gaps = 39/320 (12%)

Query: 2   VMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++LG C  K   +A  L   ML   L+P+V  Y  L+    + G L  A+  ++ M   S
Sbjct: 420 LILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNE-S 478

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD +TYS+ I +  K    +    +   +   GI+ + V Y+T+IDGY K  K  + 
Sbjct: 479 GLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDG 538

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 M+ S GC P+  T NS+I  Y    N                            
Sbjct: 539 RFLLDKML-SAGCVPNSITYNSLIDGYCKEKN---------------------------- 569

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                  + + R ++D M KR   P   TY I+I+   K    ++  + F +M   G  P
Sbjct: 570 -------FKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHP 622

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +   Y + + AY   G +   + ++ ++    ++ DT  +   I AYG+ G ++    + 
Sbjct: 623 DVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGIL 682

Query: 300 LTMKERHCVPDNITFATMIQ 319
             M E  C P   T++ +I+
Sbjct: 683 KRMHEVGCEPSYYTYSCLIK 702



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 136/327 (41%), Gaps = 2/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  +   ML  GL PSV  Y AL+  Y + GL   A   ++ M+S ++C P+  TY+ 
Sbjct: 361 DDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMES-NNCSPNARTYNE 419

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +         +L +M    ++ + VTYN +I G  K           S M ESG
Sbjct: 420 LILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESG 479

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD +T +  I      G +E+    +      G+KA+    + L   Y + G     
Sbjct: 480 LV-PDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDG 538

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R ++D M      P  +TYN +I+ + K  + ++       M  R ++P + TY  L+  
Sbjct: 539 RFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDN 598

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K     +   +  Q+ ++    D   +   I AY   G ++    L   M  +  +PD
Sbjct: 599 LLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPD 658

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            + +   I AY   G  + A  +  +M
Sbjct: 659 TMLYTLFIDAYGRFGSIDGAFGILKRM 685



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 143/337 (42%), Gaps = 4/337 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK     +A L    ++  GL      YT+L+  Y ++  +D A +    M +   C 
Sbjct: 213 GYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPN-KGCL 271

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            +  +Y+ LI    +  R D   K+ ++M       +  TY  II    +  +  E  + 
Sbjct: 272 RNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNM 331

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M E   C P++ T   +I +     N +  +K  N     G+   + T N L   Y 
Sbjct: 332 FKEMTEKH-CQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYC 390

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G+      ++  M+     P   TYN +I  F +  +I K      KM  R ++PN +
Sbjct: 391 KKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVV 450

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+    K G +     +L  +  S ++ D   ++  I    + G VE+   LF ++
Sbjct: 451 TYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESL 510

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           KE+    + + ++T+I  Y  +G     + L +KM++
Sbjct: 511 KEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLS 547



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 125/314 (39%), Gaps = 37/314 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LFE +   G+K +  +Y+ L+  Y + G + +    ++ M S + C P+  TY+ 
Sbjct: 501 EEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLS-AGCVPNSITYNS 559

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K   F     ++  M    IE +A TY  +ID   K  +F++    F  M+ +G
Sbjct: 560 LIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTG 619

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
             HPD+F   + I AY + G ++  E    + N  G+  D     +   +YGR G  D  
Sbjct: 620 S-HPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGA 678

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME------------------------ 226
             ++  M +    P+  TY+ +I+    A   E                           
Sbjct: 679 FGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVD 738

Query: 227 -----EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR------QVENSDVILD 275
                + F KM   G  PN+ TY   ++   K G +     +        Q  N D+   
Sbjct: 739 YEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNS 798

Query: 276 TPFFNCIISAYGQA 289
               +C +  YG+A
Sbjct: 799 LLGCSCQLGLYGEA 812



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/373 (20%), Positives = 143/373 (38%), Gaps = 40/373 (10%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV-- 58
           ++M+      E A  + E++ S   +     +   +  Y    +L   F  I++MKSV  
Sbjct: 134 ILMIKSTDSSENALFVLEMLRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYL 193

Query: 59  ----SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
                   P+++T + ++    K       E  ++++   G+     TY ++I GY + K
Sbjct: 194 EMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNK 253

Query: 115 KFEEMESSFSAMVESG----------------------------------GCHPDIFTLN 140
             +   + F +M   G                                   C P + T  
Sbjct: 254 NVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYT 313

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I A    G   +    + E      + ++ T  +L  S      +D  + +++ M ++
Sbjct: 314 VIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEK 373

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P+VVTYN +I+ + K G      E    M+     PN+ TY  L+  + +   I K 
Sbjct: 374 GLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKA 433

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            S+L ++    +  +   +N +I    + GD+    +L   M E   VPD  T++  I  
Sbjct: 434 MSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDT 493

Query: 321 YNALGMTEAAQNL 333
               G+ E A++L
Sbjct: 494 LCKRGLVEEARSL 506



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 1/274 (0%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y++L+   ++F   D ++ +  EM    +  +  T NT+++GY K     E E   S +V
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIV 231

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           ++G    D FT  S+I  Y  + N++     +      G   +  +   L   +  A   
Sbjct: 232 QAG-LSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRV 290

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D+   +   M +   +PTV TY ++I    + G   +    FK+M  +  +PN  TY  L
Sbjct: 291 DEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVL 350

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           + +  +         IL  +    +I     +N +I  Y + G      E+   M+  +C
Sbjct: 351 ICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNC 410

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            P+  T+  +I  +        A +L +KM+  K
Sbjct: 411 SPNARTYNELILGFCRGKNIHKAMSLLHKMLERK 444



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 79/170 (46%)

Query: 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           K  ++  N+L     R  M D+M+SV   M      P + T N ++  + K G++ + E 
Sbjct: 166 KLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAEL 225

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
           Y  K+   G+  ++ TY SL+  Y +   +   ++I   + N   + +   +  +I  + 
Sbjct: 226 YVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFC 285

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +A  V++  +LF  M E +C P   T+  +I A   LG    A N+  +M
Sbjct: 286 EARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEM 335



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 114/312 (36%), Gaps = 31/312 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA  +F+ MLS G  P V +YTA + AY   G L +A   I  M +     PD   Y++
Sbjct: 606 DQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNA-KGIMPDTMLYTL 664

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK--------------- 115
            I +  +F   D    IL  M  +G E S  TY+ +I     AK                
Sbjct: 665 FIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSG 724

Query: 116 --------------FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
                         +E     F  M E G C P+  T    I+     G +E   + ++ 
Sbjct: 725 VASNDFSNCWRRVDYEFTLDLFGKMAEHG-CAPNANTYGKFITGLCKVGCLEVAHRLFDH 783

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G   +    N L     + G+Y +    +D M +    P + +  +++      G+
Sbjct: 784 MKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGN 843

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK +  F          + + +  L+    K GL  K   +   +E     +    ++ 
Sbjct: 844 DEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSM 903

Query: 282 IISAYGQAGDVE 293
           +I  +    +++
Sbjct: 904 LIEGFDGIQEID 915


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 158/340 (46%), Gaps = 5/340 (1%)

Query: 2   VMLGKCKQPEQASLLFEVMLS-DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           V+LG   +  Q S+  EV L   G   +V V+ A++  Y +SG  D+A   ++ M     
Sbjct: 193 VVLGVLGRARQDSIAEEVFLRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHD-RG 251

Query: 61  CKPDVYTYSILIKSCTKFHRF--DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             PD+ +++ LI + +K       +   +L E+   G+    +TYNT+I    ++   E+
Sbjct: 252 IDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLED 311

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             + F  M+ S  C PD++T N+M+S +G  G  E+ E+ + E    G   D  T N L 
Sbjct: 312 AVTVFEDMIASE-CRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLL 370

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            ++ + G  DK+    + + K  F    +TYN +I  +GK G ++     + +M+  G  
Sbjct: 371 YAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCT 430

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+++TY  ++ +  K   I +   +L  + ++ +      F+ +I AY + G        
Sbjct: 431 PDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENT 490

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  M      PD + +  M+  +   G TE    L  KM+
Sbjct: 491 FDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMM 530



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 146/289 (50%), Gaps = 3/289 (1%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 74
           LLFEV  S GL+P V  Y  L+SA  QS  L++A +   DM + S+C+PD++TY+ ++  
Sbjct: 280 LLFEVRQS-GLRPDVITYNTLISACSQSSNLEDAVTVFEDMIA-SECRPDLWTYNAMVSV 337

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             +  + +  E++  E+   G    A+TYN+++  + K    +++E +   +V++G    
Sbjct: 338 HGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKN 397

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           +I T N+MI  YG  G ++     Y+E   MG   D  T  ++  S G+     +   V+
Sbjct: 398 EI-TYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVL 456

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + M      PT++ ++ +I  + K G     E  F  M   G+KP+ + Y  ++  ++++
Sbjct: 457 EDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARS 516

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           G   K+  + R++ N +   D   +  ++ A  +    E++ E+   M+
Sbjct: 517 GDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDME 565



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 155/337 (45%), Gaps = 11/337 (3%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPS--VD--VYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            GK K  +QA +L +     GL+ +  +D  ++ AL+ AY +SGL ++A +  ++M     
Sbjct: 757  GKIKLWQQAEILVK-----GLRQASGIDRRIWNALIHAYAESGLYEKARAVFDNMIKTGP 811

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
              P V + + ++++     R D +  ++ E+  +  + S  T   ++D + KA    E+ 
Sbjct: 812  L-PTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVM 870

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              ++ M ++ G  P++    SMIS   +      +E    E    G K D+  LN L   
Sbjct: 871  KIYNGM-KAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNM 929

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            Y  AG +D+   V   + +    P   TYN +I  + ++   E+      +M  RG+ P 
Sbjct: 930  YTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPK 989

Query: 241  SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
              +Y SL++A +KA L  + D I  ++ +    L+   ++ ++  Y  AG+  K   L  
Sbjct: 990  LQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLA 1049

Query: 301  TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             MKE    P   T   ++ +Y   G    A+N+ N +
Sbjct: 1050 VMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNL 1086



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 134/286 (46%), Gaps = 2/286 (0%)

Query: 35   LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
            L+ A+ ++G + E     N MK+     P+++ Y  +I      +RF  +E ++AEM   
Sbjct: 856  LLDAFAKAGDVFEVMKIYNGMKAAGYL-PNMHLYRSMISLLCHHNRFRDVELMIAEMEGA 914

Query: 95   GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
            G +      N +++ Y  A  F+     + +++E+G   PD  T N++I  Y  S   E+
Sbjct: 915  GFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAG-LEPDEDTYNTLIVMYCRSFRPEE 973

Query: 155  MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
                 NE    G+   +Q+   L  +  +A + ++   + + M+ + +      Y+++++
Sbjct: 974  GFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMK 1033

Query: 215  TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
             +  AG+  K E     MK  G++P   T   L+++Y  AG   + +++L  +++S + +
Sbjct: 1034 IYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEV 1093

Query: 275  DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             T  ++ +  AY + GD        L MK     PD+  +   I+A
Sbjct: 1094 STLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRA 1139



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 143/311 (45%), Gaps = 2/311 (0%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E+A  +F+ M+  G  P+VD    ++ A    G LDE +  + +++ + + K    T  +
Sbjct: 797  EKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDM-NFKISKSTVLL 855

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            L+ +  K      + KI   M   G   +   Y ++I       +F ++E   + M E  
Sbjct: 856  LLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEM-EGA 914

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            G  PD+  LN++++ Y  +GN ++  + Y      G++ D  T N L   Y R+   ++ 
Sbjct: 915  GFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEG 974

Query: 191  RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++++ M KR   P + +Y  ++    KA   E+ ++ F++M+ +  + N   Y  ++  
Sbjct: 975  FTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKI 1034

Query: 251  YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            Y  AG   K +++L  ++   +       + ++++YG AG   +   +   +K       
Sbjct: 1035 YRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVS 1094

Query: 311  NITFATMIQAY 321
             + ++T+  AY
Sbjct: 1095 TLPYSTVFDAY 1105



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 37/216 (17%)

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G  A +Q  N +   Y R+G +D  R ++D M  R   P +V++N +I    K+G 
Sbjct: 212 LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGC 271

Query: 222 IEK--MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           +      +   +++  G++P+ ITY +L+SA S++  +    ++   +  S+   D   +
Sbjct: 272 LAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTY 331

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPD----------------------------- 310
           N ++S +G+ G  E+   LF  + E+  +PD                             
Sbjct: 332 NAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVK 391

Query: 311 ------NITFATMIQAYNALGMTEAAQNLENKMIAM 340
                  IT+ TMI  Y  +G  + A  L ++M AM
Sbjct: 392 AGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAM 427



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 162/406 (39%), Gaps = 73/406 (17%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN--------D 54
           ML K +   Q + L +     G KP +    ++++AY  +   +E  S +          
Sbjct: 578 MLIKARCVSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECICEHVSFS 637

Query: 55  MKSVSDCKP-------------DVYTYSILIK----SCTKFHRFD--LIE--------KI 87
              +S+C               + Y+  +++K    +C  +      LIE        ++
Sbjct: 638 QDLISECSIMLLCRKQTSISAYEQYSQRLMLKYPGQNCNLYEYLITCLIEAEFFSEACQV 697

Query: 88  LAEMSYLGIECSAVTYNT------------------------------------IIDGYG 111
             +M ++GIE S   Y +                                    II+ YG
Sbjct: 698 FCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGIPLNILSCRVIIIEAYG 757

Query: 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
           K K +++ E     + ++ G    I+  N++I AY  SG  EK    ++     G    +
Sbjct: 758 KIKLWQQAEILVKGLRQASGIDRRIW--NALIHAYAESGLYEKARAVFDNMIKTGPLPTV 815

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
            ++N + ++    G  D++  V++ +Q   F  +  T  ++++ F KAG + ++ + +  
Sbjct: 816 DSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNG 875

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           MK  G  PN   Y S++S          V+ ++ ++E +    D    N +++ Y  AG+
Sbjct: 876 MKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGN 935

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            ++  +++ ++ E    PD  T+ T+I  Y      E    L N+M
Sbjct: 936 FDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEM 981



 Score = 44.7 bits (104), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 125/325 (38%), Gaps = 12/325 (3%)

Query: 1   MVML---GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           +VML    +    E+   L+  M++D  +P  D+Y  L+ A  +    +E    I DM+ 
Sbjct: 507 LVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDMEL 566

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           +      + +  ++   C          K+L +    G +    +  +I++ Y   +K E
Sbjct: 567 LCRMNLGIISTMLIKARCVSQG-----AKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHE 621

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E  S    + E      D+ +  S++       +I   E++     L     +      L
Sbjct: 622 EGLSLLECICEHVSFSQDLISECSIMLLCRKQTSISAYEQYSQRLMLKYPGQNCNLYEYL 681

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                 A  + +   V   MQ      +   Y  +I T+ K G  E            G+
Sbjct: 682 ITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGI 741

Query: 238 KPNSITYCS--LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            P +I  C   ++ AY K  L  + + +++ +  +  I D   +N +I AY ++G  EK 
Sbjct: 742 -PLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQASGI-DRRIWNALIHAYAESGLYEKA 799

Query: 296 GELFLTMKERHCVPDNITFATMIQA 320
             +F  M +   +P   +   M++A
Sbjct: 800 RAVFDNMIKTGPLPTVDSVNGMMRA 824


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 147/310 (47%), Gaps = 2/310 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G  P V  Y+ +++ Y   G L +    I +M+ +   KP++YTY+ +I    K  + D 
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQ-MKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            E++L EM   GI    V Y T+IDG+ K    +     F  M E     PD     ++I
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEM-EKQRIVPDFIAYTAVI 122

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 G + + +K +N+    GV+ D  T   L   Y ++G  +K  S+ + M +    
Sbjct: 123 CGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLT 182

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVTY  + +   K G ++   E   +M  +G++ N  TY SLV+   K+G I +   +
Sbjct: 183 PNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKL 242

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           + ++E + +  DT  F  ++ AY + G++ K  EL   M +R   P  ITF  ++  +  
Sbjct: 243 MEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCM 302

Query: 324 LGMTEAAQNL 333
            GM E  + L
Sbjct: 303 SGMLEDGERL 312



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 125/251 (49%), Gaps = 2/251 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +C +  +A  +F  M S G++P    YT L+  Y +SG +++AFS  N M   S   P
Sbjct: 125 LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQ-SGLTP 183

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TY+ L     K  + D   ++L EM   G++ +  TYN++++G  K+    +     
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLM 243

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E  G +PD  T  +++ AY  +G + K  +   E    G++  + T N+L   +  
Sbjct: 244 EEM-EVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCM 302

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +GM +    ++ +M ++   P   TYN +++ +    ++    E +K M  RG+ P+S T
Sbjct: 303 SGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNT 362

Query: 244 YCSLVSAYSKA 254
           Y  L+  + KA
Sbjct: 363 YNILIKGHCKA 373



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 1/276 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV +YS +I           + K++ EM   G++ +  TYN+II    K+ K ++ E  
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+  G   PD     ++I  +   GNI+   K ++E     +  D      +     
Sbjct: 68  LREMINQG-IVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLC 126

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G   +   V + M  R   P  VTY  +I+ + K+G +EK      +M   G+ PN +
Sbjct: 127 RCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVV 186

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L     K G +   + +L ++    + L+   +N +++   ++G++ +  +L   M
Sbjct: 187 TYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEM 246

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +     PD ITF T++ AY   G    A  L  +M+
Sbjct: 247 EVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREML 282



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 133/303 (43%), Gaps = 4/303 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    + A  LF+ M    + P    YTA++    + G + EA    N M S    +
Sbjct: 89  GFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFS-RGVE 147

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY+ LI    K    +    +  +M   G+  + VTY  + DG  K  + +     
Sbjct: 148 PDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANEL 207

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M    G   +I T NS+++    SGNI +  K   E  + G+  D  T   L  +Y 
Sbjct: 208 LHEMC-GKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYC 266

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   K   ++  M  R   PTV+T+N+++  F  +G +E  E     M  +G+ PN+ 
Sbjct: 267 KTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTT 326

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+  Y     +     I + +    V+ D+  +N +I  + +A ++++   L   M
Sbjct: 327 TYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEM 386

Query: 303 KER 305
            E+
Sbjct: 387 AEK 389



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 101/207 (48%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD+ + +++I+ Y   G ++K+ K   E  + G+K ++ T N +     ++G  D  
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDA 64

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V+  M  +   P  V Y  +I+ F K G+I+   + F +M+ + + P+ I Y +++  
Sbjct: 65  ERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICG 124

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G +M+ D +  ++ +  V  D   +  +I  Y ++G++EK   L   M +    P+
Sbjct: 125 LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPN 184

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            +T+  +      LG  + A  L ++M
Sbjct: 185 VVTYTALADGLCKLGQVDTANELLHEM 211



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 84/173 (48%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G   D+ + + +   Y   G   K+  ++  MQ +   P + TYN +I    K+G ++  
Sbjct: 5   GDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDA 64

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           E   ++M ++G+ P+++ Y +L+  + K G I     +  ++E   ++ D   +  +I  
Sbjct: 65  ERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICG 124

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             + G + +  ++F  M  R   PD +T+ T+I  Y   G  E A +L N+M+
Sbjct: 125 LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMV 177



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 78/143 (54%)

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M+ R   P VV+Y+ VI  +   G ++K+ +  ++M+ +G+KPN  TY S++    K+G 
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           +   + +LR++ N  ++ DT  +  +I  + + G+++   +LF  M+++  VPD I +  
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 317 MIQAYNALGMTEAAQNLENKMIA 339
           +I      G    A  + NKM +
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFS 143


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 174/379 (45%), Gaps = 41/379 (10%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           +++ G C   + ++A  L ++M  DG    P V  YT +++ + + G LD+A+ T ++M 
Sbjct: 167 ILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEML 226

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
                 P+V TY+ +I +  K    D   ++L  M   G+  +  TYN+I+ GY  + + 
Sbjct: 227 D-RGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP 285

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +E    F   + S G  PD+ T NS++     +G   +  K ++     G+K +I T   
Sbjct: 286 KE-AIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L + Y   G   +M  ++D M +    P    ++I+I  + K G +++    F KM+ +G
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 237 MKPNSITYCSLVSAYSKAGLIM-----------------------------------KVD 261
           + P+++TY +++    K+G +                                    K  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            ++ ++ +  + LDT FFN II ++ + G V +  +LF  M      P+ IT++T+I  Y
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGY 524

Query: 322 NALGMTEAAQNLENKMIAM 340
              G  + A  L   M+++
Sbjct: 525 CLAGKMDEATKLLASMVSV 543



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 159/349 (45%), Gaps = 6/349 (1%)

Query: 2   VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++G C    +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 96  ILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQ 155

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKF 116
             C P+V++Y+IL+K     +R     ++L  M   G +C    V+Y T+I+G+ K    
Sbjct: 156 LGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDL 215

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           ++   ++  M++ G   P++ T NS+I+A   +  ++K  +        GV  + +T N 
Sbjct: 216 DKAYGTYHEMLDRG-ILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNS 274

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +   Y  +G   +    +  M      P VVTYN +++   K G   +  + F  M  RG
Sbjct: 275 IVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG 334

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           +KP   TY +L+  Y+  G ++++  +L  +  + +  +   F+ +I AY + G V++  
Sbjct: 335 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAM 394

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            +F  M+++   PD +T+ T+I      G  E A     +MI  + + G
Sbjct: 395 LVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 139/312 (44%), Gaps = 8/312 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA L+F  M   GL P    Y  ++    +SG +++A      M       P    Y+ 
Sbjct: 391 DQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID-ERLSPGNIVYNS 449

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S   F ++D  ++++ EM   GI    + +N+IID + K  +  E E  F  MV  G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P+I T +++I  Y  +G +++  K       +G+K D  T N L   Y +    +  
Sbjct: 510 -VKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M+     P ++TYNI+++   +       +E +  +   G +    TY  ++  
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 251 YSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
             K  L    D  LR  +N   +D+ L+T  FN +I A  + G  ++  +LF  +     
Sbjct: 629 LCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGL 685

Query: 308 VPDNITFATMIQ 319
           VPD  T++ M +
Sbjct: 686 VPDVRTYSLMAE 697



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 135/297 (45%), Gaps = 4/297 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   ML  G+      + +++ ++ + G + E+    + M  +   KP++ TYS 
Sbjct: 461 DKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKPNIITYST 519

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       + D   K+LA M  +G++   VTYNT+I+GY K  + E+    F  M ES 
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREM-ESS 578

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK- 189
           G  PDI T N ++     +      ++ Y      G + ++ T NI+     +  + D+ 
Sbjct: 579 GVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEA 638

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +R   +         T  T+NI+I    K G  ++ ++ F  +   G+ P+  TY  +  
Sbjct: 639 LRMFQNLCLTDLQLETR-TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAE 697

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
              + GL+ ++D +   +E +    ++   N I+    Q GD+ + G     + E+H
Sbjct: 698 NLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITRAGTYLFMIDEKH 754



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 125/264 (47%), Gaps = 4/264 (1%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+    ++  LF++M+  G+KP++  Y+ L+  Y  +G +DEA   +  M SV   KPD
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVG-MKPD 548

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ LI    K  R +    +  EM   G+    +TYN I+ G  + ++    +  + 
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 608

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + ESG    ++ T N ++     +   ++  + +    L  ++ + +T NI+  +  + 
Sbjct: 609 GITESG-TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKV 667

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D+ + +   +      P V TY+++ E   + G +E++++ F  M+  G   NS   
Sbjct: 668 GRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRML 727

Query: 245 CSLVSAYSKAGLIMKVDSILRQVE 268
            S+V    + G I +  + L  ++
Sbjct: 728 NSIVRKLLQRGDITRAGTYLFMID 751


>gi|357122825|ref|XP_003563115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Brachypodium distachyon]
          Length = 410

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 160/338 (47%), Gaps = 8/338 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  +  +A  +F+VM   GL P+   +TAL+  Y   G  ++  +    M+ +   +
Sbjct: 47  GYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGRREKGLALFEKMR-IGGIE 105

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++YTY+IL+    +   F+    +  EM   GI  + V+YNT+I G  + +K ++    
Sbjct: 106 PNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNTLIAGLCRYRKMKDATQL 165

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M   G   P + T N ++  YG +G +     + N+  + G +    T N L   + 
Sbjct: 166 LELMRREG-IRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAGYQPSAVTYNALIAGFC 224

Query: 183 RAGMYDKMRSVMDF--MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           RA   D +R+   F  M++R   PT VTY I+I+ F +   ++K  E F  M+  G++ +
Sbjct: 225 RA--RDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMFAGMEKAGLEVD 282

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY  LV A    G +     + + +    + +    ++ +I  YG+ G   K  +L +
Sbjct: 283 VRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGREGSSYKAMKLIM 342

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            M+++  VP++ ++   I+     G    A+ L + M+
Sbjct: 343 EMRKKGFVPNSASYGLTIRILCNDGKCSEAEALIDDMV 380



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 116/253 (45%), Gaps = 4/253 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + ++ + A+ L E+M  +G++PSV  +  LV  YG++G +  A    N M+ ++  +P
Sbjct: 153 LCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMR-MAGYQP 211

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
              TY+ LI    +        +  ++M   G+  + VTY  +ID + +    ++    F
Sbjct: 212 SAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAFARENDMDKAFEMF 271

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M E  G   D+ T   ++ A    GN++   K +      G++      ++L   YGR
Sbjct: 272 AGM-EKAGLEVDVRTYGVLVHALCMEGNMKDARKLFQSIGEKGLQVGNVIYDMLIYGYGR 330

Query: 184 AG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            G  Y  M+ +M+ M+K+ F P   +Y + I      G   + E     M   G++ +  
Sbjct: 331 EGSSYKAMKLIME-MRKKGFVPNSASYGLTIRILCNDGKCSEAEALIDDMVRAGVQTSES 389

Query: 243 TYCSLVSAYSKAG 255
               L++A ++ G
Sbjct: 390 VRQVLLNAKARQG 402



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/230 (18%), Positives = 92/230 (40%), Gaps = 35/230 (15%)

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            ++G    D+    +++  Y  SG++ + ++ ++    +G+  +  T   L   Y   G 
Sbjct: 29  AKAGDTTLDVAACTALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHGR 88

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            +K  ++ + M+     P + TYNI++  + + G  E+    F++M  +G+  N ++Y +
Sbjct: 89  REKGLALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYNT 148

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG---------------- 290
           L++   +   +     +L  +    +      FN ++  YG+AG                
Sbjct: 149 LIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQMRMAG 208

Query: 291 -------------------DVEKMGELFLTMKERHCVPDNITFATMIQAY 321
                              D+ +    F  MKER   P  +T+  +I A+
Sbjct: 209 YQPSAVTYNALIAGFCRARDMIRANRAFSDMKERGLAPTKVTYTILIDAF 258



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 5/177 (2%)

Query: 166 GVKADIQTLNI-----LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           G KA   TL++     L   Y R+G   + + V D M +    P  VT+  +I  +   G
Sbjct: 28  GAKAGDTTLDVAACTALVHGYCRSGDVAEAQRVFDVMPRLGLTPNEVTFTALIHGYFIHG 87

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
             EK    F+KM+  G++PN  TY  LV  + + G   +   +  ++    +  +   +N
Sbjct: 88  RREKGLALFEKMRIGGIEPNLYTYNILVGEWCRTGEFERARLLFEEMPAKGITRNVVSYN 147

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +I+   +   ++   +L   M+     P  +TF  ++  Y   G    A +  N+M
Sbjct: 148 TLIAGLCRYRKMKDATQLLELMRREGIRPSVVTFNLLVDGYGKAGKMSNALHFSNQM 204


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 3/335 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  +PE A   F  +L  GL+    + + L+  + ++   DEA   +        C PDV
Sbjct: 89  RAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDV 148

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSF 123
           ++Y+IL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K     +    F
Sbjct: 149 FSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 208

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+ G   PD+ T NS++ A   +  ++K E +  +     V  +  T N L   Y  
Sbjct: 209 KEMVQRG-IPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSS 267

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +   V   M++    P VVT ++++ +  K G I++  + F  M  +G  P+  +
Sbjct: 268 TGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 327

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +++ Y+  G ++ +  +   +    +  D   FN  I AY   G ++K   +F  M+
Sbjct: 328 YNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMR 387

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +    PD +T+ T+I A   +G  + A    N+MI
Sbjct: 388 DHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 422



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 33/281 (11%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  YTY+IL+  CT+ HR +L      ++   G+   A+  + ++ G+ +AK+ +E    
Sbjct: 75  PTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDI 134

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
                   GC PD+F+ N ++ +  N G   + +      NL+ + A+  T+        
Sbjct: 135 LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQAD------NLLRMMAEGGTV-------- 180

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                                P VV YN VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 181 -------------------CSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 221

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S+V A  KA  + K ++ LRQ+ N  V+ +   +N +I  Y   G  ++   +F  M
Sbjct: 222 TYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEM 281

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           +    +PD +T + ++ +    G  + A+++ + M    +N
Sbjct: 282 RRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 322


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 158/340 (46%), Gaps = 5/340 (1%)

Query: 2   VMLGKCKQPEQASLLFEVMLS-DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           V+LG   +  Q S+  EV L   G   +V V+ A++  Y +SG  D+A   ++ M     
Sbjct: 193 VVLGVLGRARQDSIAEEVFLRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHD-RG 251

Query: 61  CKPDVYTYSILIKSCTKFHRF--DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             PD+ +++ LI + +K       +   +L E+   G+    +TYNT+I    ++   E+
Sbjct: 252 IDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLED 311

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             + F  M+ S  C PD++T N+M+S +G  G  E+ E+ + E    G   D  T N L 
Sbjct: 312 AVTVFEDMIASE-CRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLL 370

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            ++ + G  DK+    + + K  F    +TYN +I  +GK G ++     + +M+  G  
Sbjct: 371 YAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCT 430

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+++TY  ++ +  K   I +   +L  + ++ +      F+ +I AY + G        
Sbjct: 431 PDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENT 490

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  M      PD + +  M+  +   G TE    L  KM+
Sbjct: 491 FDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMM 530



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 146/289 (50%), Gaps = 3/289 (1%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 74
           LLFEV  S GL+P V  Y  L+SA  QS  L++A +   DM + S+C+PD++TY+ ++  
Sbjct: 280 LLFEVRQS-GLRPDVITYNTLISACSQSSNLEDAVTVFEDMIA-SECRPDLWTYNAMVSV 337

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             +  + +  E++  E+   G    A+TYN+++  + K    +++E +   +V++G    
Sbjct: 338 HGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKN 397

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           +I T N+MI  YG  G ++     Y+E   MG   D  T  ++  S G+     +   V+
Sbjct: 398 EI-TYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVL 456

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + M      PT++ ++ +I  + K G     E  F  M   G+KP+ + Y  ++  ++++
Sbjct: 457 EDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARS 516

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           G   K+  + R++ N +   D   +  ++ A  +    E++ E+   M+
Sbjct: 517 GDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDME 565



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 155/337 (45%), Gaps = 11/337 (3%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPS--VD--VYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            GK K  +QA +L +     GL+ +  +D  ++ AL+ AY +SGL ++A +  ++M     
Sbjct: 757  GKIKLWQQAEILVK-----GLRQASGIDRRIWNALIHAYAESGLYEKARAVFDNMIKTGP 811

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
              P V + + ++++     R D +  ++ E+  +  + S  T   ++D + KA    E+ 
Sbjct: 812  L-PTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVM 870

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              ++ M ++ G  P++    SMIS   +      +E    E    G K D+  LN L   
Sbjct: 871  KIYNGM-KAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNM 929

Query: 181  YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            Y  AG +D+   V   + +    P   TYN +I  + ++   E+      +M  RG+ P 
Sbjct: 930  YTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPK 989

Query: 241  SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
              +Y SL++A +KA L  + D I  ++ +    L+   ++ ++  Y  AG+  K   L  
Sbjct: 990  LQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLA 1049

Query: 301  TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             MKE    P   T   ++ +Y   G    A+N+ N +
Sbjct: 1050 VMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNL 1086



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 134/286 (46%), Gaps = 2/286 (0%)

Query: 35   LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
            L+ A+ ++G + E     N MK+     P+++ Y  +I      +RF  +E ++AEM   
Sbjct: 856  LLDAFAKAGDVFEVMKIYNGMKAAGYL-PNMHLYRSMISLLCHHNRFRDVELMIAEMEGA 914

Query: 95   GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
            G +      N +++ Y  A  F+     + +++E+G   PD  T N++I  Y  S   E+
Sbjct: 915  GFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAG-LEPDEDTYNTLIVMYCRSFRPEE 973

Query: 155  MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
                 NE    G+   +Q+   L  +  +A + ++   + + M+ + +      Y+++++
Sbjct: 974  GFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMK 1033

Query: 215  TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
             +  AG+  K E     MK  G++P   T   L+++Y  AG   + +++L  +++S + +
Sbjct: 1034 IYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEV 1093

Query: 275  DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             T  ++ +  AY + GD        L MK     PD+  +   I+A
Sbjct: 1094 STLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRA 1139



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 143/311 (45%), Gaps = 2/311 (0%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E+A  +F+ M+  G  P+VD    ++ A    G LDE +  + +++ + + K    T  +
Sbjct: 797  EKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDM-NFKISKSTVLL 855

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            L+ +  K      + KI   M   G   +   Y ++I       +F ++E   + M E  
Sbjct: 856  LLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEM-EGA 914

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            G  PD+  LN++++ Y  +GN ++  + Y      G++ D  T N L   Y R+   ++ 
Sbjct: 915  GFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEG 974

Query: 191  RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++++ M KR   P + +Y  ++    KA   E+ ++ F++M+ +  + N   Y  ++  
Sbjct: 975  FTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKI 1034

Query: 251  YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            Y  AG   K +++L  ++   +       + ++++YG AG   +   +   +K       
Sbjct: 1035 YRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVS 1094

Query: 311  NITFATMIQAY 321
             + ++T+  AY
Sbjct: 1095 TLPYSTVFDAY 1105



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 37/212 (17%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK- 224
           G  A +Q  N +   Y R+G +D  R ++D M  R   P +V++N +I    K+G +   
Sbjct: 216 GEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAG 275

Query: 225 -MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
              +   +++  G++P+ ITY +L+SA S++  +    ++   +  S+   D   +N ++
Sbjct: 276 VALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMV 335

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPD--------------------------------- 310
           S +G+ G  E+   LF  + E+  +PD                                 
Sbjct: 336 SVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFK 395

Query: 311 --NITFATMIQAYNALGMTEAAQNLENKMIAM 340
              IT+ TMI  Y  +G  + A  L ++M AM
Sbjct: 396 KNEITYNTMIHMYGKMGRLDLAVGLYDEMRAM 427



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 81/406 (19%), Positives = 156/406 (38%), Gaps = 73/406 (17%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN--------D 54
           ML K +   Q + L +     G KP +    ++++AY  +   +E  S +          
Sbjct: 578 MLIKARCVSQGAKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHEEGLSLLECICEHVSFS 637

Query: 55  MKSVSDCK-------------------------PD--VYTYSILIKSCTKFHRFDLIEKI 87
              +S+C                          PD     Y  LI    +   F    ++
Sbjct: 638 QDLISECSIMLLCRKQTSISAYEQYSQRLMLKYPDQNCNLYEYLITCLIEAEFFSEACQV 697

Query: 88  LAEMSYLGIECSAVTYNT------------------------------------IIDGYG 111
             +M ++GIE S   Y +                                    II+ YG
Sbjct: 698 FCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGIPLNILSCRVIIIEAYG 757

Query: 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
           K K +++ E     + ++ G    I+  N++I AY  SG  EK    ++     G    +
Sbjct: 758 KIKLWQQAEILVKGLRQASGIDRRIW--NALIHAYAESGLYEKARAVFDNMIKTGPLPTV 815

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
            ++N + ++    G  D++  V++ +Q   F  +  T  ++++ F KAG + ++ + +  
Sbjct: 816 DSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNG 875

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           MK  G  PN   Y S++S          V+ ++ ++E +    D    N +++ Y  AG+
Sbjct: 876 MKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGN 935

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            ++  +++ ++ E    PD  T+ T+I  Y      E    L N+M
Sbjct: 936 FDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEM 981



 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 65/325 (20%), Positives = 125/325 (38%), Gaps = 12/325 (3%)

Query: 1   MVML---GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           +VML    +    E+   L+  M++D  +P  D+Y  L+ A  +    +E    I DM+ 
Sbjct: 507 LVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDMEL 566

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           +      + +  ++   C          K+L +    G +    +  +I++ Y   +K E
Sbjct: 567 LCRMNLGIISTMLIKARCVSQG-----AKLLKKACLQGYKPDIKSLRSIMNAYVMTEKHE 621

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E  S    + E      D+ +  S++       +I   E++     L     +      L
Sbjct: 622 EGLSLLECICEHVSFSQDLISECSIMLLCRKQTSISAYEQYSQRLMLKYPDQNCNLYEYL 681

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                 A  + +   V   MQ      +   Y  +I T+ K G  E            G+
Sbjct: 682 ITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIISTYCKLGFPETAHRLMDDALQSGI 741

Query: 238 KPNSITYCS--LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            P +I  C   ++ AY K  L  + + +++ +  +  I D   +N +I AY ++G  EK 
Sbjct: 742 -PLNILSCRVIIIEAYGKIKLWQQAEILVKGLRQASGI-DRRIWNALIHAYAESGLYEKA 799

Query: 296 GELFLTMKERHCVPDNITFATMIQA 320
             +F  M +   +P   +   M++A
Sbjct: 800 RAVFDNMIKTGPLPTVDSVNGMMRA 824


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 157/333 (47%), Gaps = 7/333 (2%)

Query: 5   GKCKQ---PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           G CK+    E    + E+ L +G  P    +  LV+   ++G +  A   + DM      
Sbjct: 274 GFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVM-DMMLREGF 332

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PD+YTY+ LI    K    D   K+L +M       + VTYNTII    K  + EE  +
Sbjct: 333 DPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEE--A 390

Query: 122 SFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           +  A+V +G G  PD+ T NS+I     S N     + Y E    G   D  T N+L  S
Sbjct: 391 TKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDS 450

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               G   +  +++  M+       V+TYN +I+ F K   I + EE F +M+ +G+  N
Sbjct: 451 LCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRN 510

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           S+TY +L+    K+  + +   ++ Q+    +  D   +N +++ + +AGD++K  ++  
Sbjct: 511 SVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQ 570

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           TM    C PD +T+ T+I      G  EAA  L
Sbjct: 571 TMASDGCEPDIVTYGTLIAGLCKAGRVEAATKL 603



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 153/352 (43%), Gaps = 37/352 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K    + A  + ++ML +G  P +  Y +L+S   + G +DEA   +N M    DC P
Sbjct: 311 LSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIE-RDCSP 369

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TY+ +I +  K ++ +   K+   ++  GI     TYN++I G   ++        +
Sbjct: 370 NTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELY 429

Query: 124 SAMVESGGCHPDIFTLN-----------------------------------SMISAYGN 148
             M ++ GCHPD FT N                                   ++I  +  
Sbjct: 430 KEM-KTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCK 488

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +  I + E+ +++  L GV  +  T N L     ++   ++   +MD M      P   T
Sbjct: 489 NKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFT 548

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN ++  F KAG I+K  +  + M   G +P+ +TY +L++   KAG +     +LR ++
Sbjct: 549 YNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQ 608

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
              + L    +N +I A  +    ++   LF  M E+   PD +T+  + + 
Sbjct: 609 MKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRG 660



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 140/344 (40%), Gaps = 37/344 (10%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTI--------------------------NDMKSVS---- 59
           D     + +Y   GL +E    +                          N +K V     
Sbjct: 125 DSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHS 184

Query: 60  -----DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
                  +PDV T++ILIK+  + H+      ++ EM   G+     T+ TI+ G+ +  
Sbjct: 185 NMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEG 244

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM-GVKADIQT 173
             +        MVE+ GC     T+N +++ +   G IE+  ++  E +L  G   D  T
Sbjct: 245 NLDGAMRVKEQMVEA-GCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYT 303

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N+L     + G       VMD M +  F P + TYN +I    K G +++  +   +M 
Sbjct: 304 FNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMI 363

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            R   PN++TY +++S   K   + +   +   +    ++ D   +N +I     + +  
Sbjct: 364 ERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHT 423

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              EL+  MK + C PD  T+  +I +    G  + A NL  +M
Sbjct: 424 VAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEM 467



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 136/333 (40%), Gaps = 39/333 (11%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
            KPS  ++  ++   G++G  D     + +MK +S    D  +  + I+S   F  ++ I
Sbjct: 85  FKPSSSIFKEVLHKLGKAGEFDAMKDILKEMK-ISLSVIDNDSLLVFIESYASFGLYNEI 143

Query: 85  EKILAEMSY-LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            + +  M    G+  +   YN +++      K + +E + S MV S G  PD+ T N +I
Sbjct: 144 LQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMV-SRGIRPDVSTFNILI 202

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD--------------- 188
            A   +  I        E    G+  D +T   + + +   G  D               
Sbjct: 203 KALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCV 262

Query: 189 -----------------KMRSVMDFMQ----KRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
                            ++   + F++    +  FFP   T+N+++    K GH++   E
Sbjct: 263 VTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALE 322

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
               M   G  P+  TY SL+S   K G + +   +L Q+   D   +T  +N IIS   
Sbjct: 323 VMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLC 382

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           +   VE+  +L L +  +  +PD  T+ ++IQ 
Sbjct: 383 KENQVEEATKLALVLTGKGILPDVCTYNSLIQG 415



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 125/315 (39%), Gaps = 50/315 (15%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI---IDGYGKAKKFEE 118
           KP    +  ++    K   FD ++ IL EM    I  S +  +++   I+ Y     + E
Sbjct: 86  KPSSSIFKEVLHKLGKAGEFDAMKDILKEMK---ISLSVIDNDSLLVFIESYASFGLYNE 142

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           +     AM    G   +    N +++   +   ++ +E  ++     G++ D+ T NIL 
Sbjct: 143 ILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILI 202

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE------------------------ 214
           K+  RA        +M+ M+     P   T+  +++                        
Sbjct: 203 KALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCV 262

Query: 215 -----------TFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCSLVSAYSKAGLIMK--- 259
                       F K G IE+   + ++M  R G  P+  T+  LV+  SK G +     
Sbjct: 263 VTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALE 322

Query: 260 -VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
            +D +LR+  + D+      +N +IS   + G+V++  ++   M ER C P+ +T+ T+I
Sbjct: 323 VMDMMLREGFDPDIYT----YNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTII 378

Query: 319 QAYNALGMTEAAQNL 333
                    E A  L
Sbjct: 379 STLCKENQVEEATKL 393


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 155/335 (46%), Gaps = 3/335 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  +PE A   F  +L  GL+    + + L+  + ++   DEA   +        C PDV
Sbjct: 125 RAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDV 184

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSF 123
           ++Y+IL+KS     +    + +L  M+  G  CS   V YNT+IDG+ K     +    F
Sbjct: 185 FSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 244

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+  G  PD+ T +S++ A   +  ++K E +  +    GV  D  T N L   Y  
Sbjct: 245 KEMVQR-GIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSS 303

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +   V   M+++   P VV  N ++ +  K G I++  + F  M  +G  P+  +
Sbjct: 304 TGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFS 363

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +++ Y+  G ++ +  +   +    +      FN +I AY   G ++K   +F  M+
Sbjct: 364 YTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMR 423

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +    P  +T+ T+I A   +G  + A    N+MI
Sbjct: 424 DHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI 458



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 151/328 (46%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF+ M+  G+ P +  Y+++V A  ++  +D+A + +  M +     PD +TY+ L
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN-KGVLPDNWTYNNL 297

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I   +   ++    ++  EM    I    V  NT++    K  K +E    F  M   G 
Sbjct: 298 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQ 357

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
            +PD+F+   M++ Y   G +  M   ++     G+   I T N+L K+Y   GM DK  
Sbjct: 358 -NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAM 416

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + + M+     P VVTY  VI    + G ++   E F +M  +G+ P+   Y  L+  +
Sbjct: 417 IIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGF 476

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G ++K   ++ ++ N+ + LD  FF  II+   + G V     +F         PD 
Sbjct: 477 CTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDA 536

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
           + +  ++  Y  +G  E A  + + M++
Sbjct: 537 VVYNMLMDGYCLVGKMEKALRVFDAMVS 564



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 145/331 (43%), Gaps = 6/331 (1%)

Query: 7   CKQPE--QASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           C Q +  QA  L  +M   G    P V  Y  ++  + + G +++A     +M       
Sbjct: 195 CNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ-RGIP 253

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+ TYS ++ +  K    D  E  L +M   G+     TYN +I GY    +++E    
Sbjct: 254 PDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRV 313

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M       PD+  LN+++ +    G I++    ++   + G   D+ +  I+   Y 
Sbjct: 314 FKEM-RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYA 372

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G    M  + D M      P + T+N++I+ +   G ++K    F +M+  G+KP+ +
Sbjct: 373 TKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVV 432

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY ++++A  + G +        Q+ +  V+ D   ++C+I  +   G + K  EL   +
Sbjct: 433 TYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 492

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                  D + F ++I     LG    AQN+
Sbjct: 493 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNI 523



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 128/279 (45%), Gaps = 34/279 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  YTY+IL+  CT+ HR +L      ++   G+   A+  + ++ G+ +AK+ +E    
Sbjct: 111 PTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDI 170

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
                   GC PD+F+ N ++ +  N                                 G
Sbjct: 171 LLHRTPELGCVPDVFSYNILLKSLCNQ--------------------------------G 198

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G  D +  +M         P VV YN VI+ F K G + K  + FK+M  RG+ P+ +
Sbjct: 199 KSGQADDLLRMMA-EGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLV 257

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S+V A  KA  + K ++ LRQ+ N  V+ D   +N +I  Y   G  ++   +F  M
Sbjct: 258 TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEM 317

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           + +  +PD +   T++ +    G  + A+++ + M AMK
Sbjct: 318 RRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTM-AMK 355



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 153/339 (45%), Gaps = 6/339 (1%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C   ++A ++F  M   G+KP V  Y  +++A  + G +D+A    N M       PD Y
Sbjct: 409 CGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMID-QGVVPDKY 467

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y  LI+           +++++E+   G+    V + +II+   K  +  + ++ F   
Sbjct: 468 AYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLT 527

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           V  G  HPD    N ++  Y   G +EK  + ++     G++ ++     L   Y + G 
Sbjct: 528 VNVG-LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGR 586

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D+  S+   M ++   P+ + YNI+I+   +AG     +  F +M   G+  N  TY  
Sbjct: 587 IDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSI 646

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++    K     +   + +++   +V +D    N +I+   Q   VE+  +LF ++    
Sbjct: 647 VLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSG 706

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            VP  +T++ MI      G+ E A+++ + M    +N+G
Sbjct: 707 LVPCAVTYSIMITNLIKEGLVEEAEDMFSSM----QNAG 741



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 142/335 (42%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A      M++ G+ P    Y  L+  Y  +G   EA     +M+  S   P
Sbjct: 266 LCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQS-ILP 324

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV   + L+ S  K+ +      +   M+  G      +Y  +++GY       +M   F
Sbjct: 325 DVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLF 384

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+   G  P I T N +I AY N G ++K    +NE    GVK  + T   +  +  R
Sbjct: 385 DLML-GDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCR 443

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D      + M  +   P    Y+ +I+ F   G + K +E   ++ + GM+ + + 
Sbjct: 444 IGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVF 503

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + S+++   K G +M   +I     N  +  D   +N ++  Y   G +EK   +F  M 
Sbjct: 504 FGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 563

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                P+ + + T++  Y  +G  +   +L  +M+
Sbjct: 564 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREML 598



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 139/310 (44%), Gaps = 2/310 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F+ M   G  P V  YT +++ Y   G L +  + + D+       P + T+++
Sbjct: 343 KEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVD-MTDLFDLMLGDGIAPVICTFNV 401

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LIK+       D    I  EM   G++   VTY T+I    +  K ++    F+ M++  
Sbjct: 402 LIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQ- 460

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD +  + +I  +   G++ K ++  +E    G++ DI     +  +  + G     
Sbjct: 461 GVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDA 520

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           +++ D        P  V YN++++ +   G +EK    F  M   G++PN + Y +LV+ 
Sbjct: 521 QNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNG 580

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K G I +  S+ R++    +   T  +N II    +AG        F  M E     +
Sbjct: 581 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMN 640

Query: 311 NITFATMIQA 320
             T++ +++ 
Sbjct: 641 KCTYSIVLRG 650



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 121/263 (46%), Gaps = 2/263 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +F++ ++ GL P   VY  L+  Y   G +++A    + M S +  +P+V  Y  L+
Sbjct: 520 AQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVS-AGIEPNVVGYGTLV 578

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K  R D    +  EM   GI+ S + YN IIDG  +A +    +  F  M ESG  
Sbjct: 579 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG-I 637

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             +  T + ++     +   ++    + E   M VK DI TLN +     +    ++ + 
Sbjct: 638 AMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKD 697

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   + +    P  VTY+I+I    K G +E+ E+ F  M++ G +P+S     +V    
Sbjct: 698 LFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELL 757

Query: 253 KAGLIMKVDSILRQVENSDVILD 275
           K   I++  + L +++  +  L+
Sbjct: 758 KKNEIVRAGAYLSKIDERNFSLE 780


>gi|255661130|gb|ACU25734.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 426

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 151/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   G     V YN +I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     MG++
Sbjct: 122 TMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK     K    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIDQNVVTYNSMMMIYGKTLEHVKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI     I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 339



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 154/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++M++ +   P+  +YS L+   
Sbjct: 66  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRT-AGVTPNTASYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    +  ++ T N +   YG+   + K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIDQNVVTYNSMMMIYGKTLEHVKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I     +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I  + +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 361 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALILNAYGKLHEFDKANDVYMEM 416



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++KME+                       
Sbjct: 1   RERALSPDRYTYSTLITHFGKEGLFDAALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G  P+ + Y ++++ + KA L  +  S++ ++  + V  +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C+ D  T   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKL 171


>gi|449457361|ref|XP_004146417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g23020-like [Cucumis sativus]
          Length = 858

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 161/334 (48%), Gaps = 6/334 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  Q ++AS  FE ML +G+ P+   +  ++   G  G L E    +  M+ +  C PD
Sbjct: 327 GKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEVTFLMQKMEELQ-CPPD 385

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ILI    K    DL     AEM   G++   V+Y T++  Y       E E   +
Sbjct: 386 TRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVAEAEKLIT 445

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGR 183
            M E G    D FT +++   Y ++G +E+   W+  F+L G + ++  + NI   +YG 
Sbjct: 446 EMDERG-LEIDEFTQSALTRMYIDAGMLEESWSWFWRFHLAGHMSSECYSANI--DAYGE 502

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   +   V    Q+     TV+ +N++I+ +G      K ++ F  MK  G+ P+  +
Sbjct: 503 RGFILEAERVFVSCQEEKKC-TVLEFNVMIKAYGVVKDYAKAQKIFDSMKSNGVVPDKCS 561

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL+   + A +     + L++++++ ++ D   ++ +IS++ + G +E   +L+  M 
Sbjct: 562 YSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSKLGHLEMADKLYREMV 621

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +    PD I +  +I A+   G  + A N  N M
Sbjct: 622 KHGVQPDIIVYGVLINAFADAGSVKEAINYVNAM 655



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 155/395 (39%), Gaps = 66/395 (16%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK ++      L+  M   G+KP    Y  L+  Y + G  +EA   +  M      +P
Sbjct: 196 LGKAQKWRLVESLWVEMNKKGIKPINSTYGTLIDVYSKGGFKEEALVWLERMNE-QGMEP 254

Query: 64  DVYTYSILIKSCTKFHRFDLIE-------------------------KILAEMSYLGIEC 98
           D  T  I+++   K   F   E                         K+ + +    +  
Sbjct: 255 DEVTMGIVVQLYKKAGEFQKAESFFKKWSSCNSMKYEITNKKKAASVKVESSLHPPHVSL 314

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S  TYNT+ID YGKA + +E  ++F  M++  G  P   T N+MI   GN G ++++   
Sbjct: 315 STYTYNTLIDTYGKAGQLKEASTTFENMLKE-GVSPTTVTFNTMIHICGNHGQLKEVTFL 373

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             +   +    D +T NIL   Y +    D   +    M++    P +V+Y  ++  +  
Sbjct: 374 MQKMEELQCPPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSI 433

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSIT----------------------------------Y 244
              + + E+   +M  RG++ +  T                                  Y
Sbjct: 434 RHMVAEAEKLITEMDERGLEIDEFTQSALTRMYIDAGMLEESWSWFWRFHLAGHMSSECY 493

Query: 245 CSLVSAYSKAGLIMKVDSILR--QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            + + AY + G I++ + +    Q E    +L+   FN +I AYG   D  K  ++F +M
Sbjct: 494 SANIDAYGERGFILEAERVFVSCQEEKKCTVLE---FNVMIKAYGVVKDYAKAQKIFDSM 550

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           K    VPD  +++++IQ      M   A     KM
Sbjct: 551 KSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKM 585



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 144/330 (43%), Gaps = 37/330 (11%)

Query: 34  ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMS 92
           A++ A  +   LDEA     D       K +    SI++K  T + R  ++ E       
Sbjct: 129 AILQALDEISDLDEALKPWKD-------KLNNKERSIILKEQTSWERALEIFEWFNMAGC 181

Query: 93  YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152
           Y   E + + YN ++   GKA+K+  +ES +  M    G  P   T  ++I  Y   G  
Sbjct: 182 Y---EVNVIHYNIVLGTLGKAQKWRLVESLWVEM-NKKGIKPINSTYGTLIDVYSKGGFK 237

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS-------------------- 192
           E+   W    N  G++ D  T+ I+ + Y +AG + K  S                    
Sbjct: 238 EEALVWLERMNEQGMEPDEVTMGIVVQLYKKAGEFQKAESFFKKWSSCNSMKYEITNKKK 297

Query: 193 -----VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                V   +       +  TYN +I+T+GKAG +++    F+ M   G+ P ++T+ ++
Sbjct: 298 AASVKVESSLHPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTM 357

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +      G + +V  +++++E      DT  +N +IS Y +  +++     F  M+E   
Sbjct: 358 IHICGNHGQLKEVTFLMQKMEELQCPPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGL 417

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKM 337
            PD +++ T++ AY+   M   A+ L  +M
Sbjct: 418 QPDIVSYRTLLYAYSIRHMVAEAEKLITEM 447



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 133/292 (45%), Gaps = 3/292 (1%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           K +V  +  ++ AYG      +A    + MKS +   PD  +YS LI+  T      +  
Sbjct: 521 KCTVLEFNVMIKAYGVVKDYAKAQKIFDSMKS-NGVVPDKCSYSSLIQILTGADMPAMAL 579

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
             L +M   G+    + Y+ +I  + K    E  +  +  MV+ G   PDI     +I+A
Sbjct: 580 AYLKKMQSAGLVSDCIPYSVVISSFSKLGHLEMADKLYREMVKHG-VQPDIIVYGVLINA 638

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           + ++G++++   + N     G+  +    N L K Y + G   +       +++    P 
Sbjct: 639 FADAGSVKEAINYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPA 698

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           + + N +I+ + +   +++ EE F+ +K +G + N  T+  ++  Y K G I +   + R
Sbjct: 699 IYSSNCMIDLYSERSMVKEAEEIFESLKKKG-EANEFTFAMMLCMYKKIGRIQEAICVAR 757

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           Q++   ++ D   FN +IS Y   G  ++   +F  M +    PD  T+ ++
Sbjct: 758 QMKEQGLLSDLLSFNNMISLYAMDGRFKEAVSIFQEMMKAAVQPDECTYKSL 809



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 129/306 (42%), Gaps = 45/306 (14%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           S + Y+A + AYG+ G + EA       +    C   V  ++++IK+      +   +KI
Sbjct: 489 SSECYSANIDAYGERGFILEAERVFVSCQEEKKCT--VLEFNVMIKAYGVVKDYAKAQKI 546

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
              M   G+     +Y+++I     A     M  ++   ++S G   D    + +IS++ 
Sbjct: 547 FDSMKSNGVVPDKCSYSSLIQILTGAD-MPAMALAYLKKMQSAGLVSDCIPYSVVISSFS 605

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G++E  +K Y E    GV+ DI                                   +
Sbjct: 606 KLGHLEMADKLYREMVKHGVQPDI-----------------------------------I 630

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            Y ++I  F  AG +++   Y   MK  G+  N++ Y SL+  Y+K G + +     + +
Sbjct: 631 VYGVLINAFADAGSVKEAINYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKML 690

Query: 268 ENSDVILDTPFF---NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           E +D   D P     NC+I  Y +   V++  E+F ++K++    +  TFA M+  Y  +
Sbjct: 691 EQTD---DGPAIYSSNCMIDLYSERSMVKEAEEIFESLKKKG-EANEFTFAMMLCMYKKI 746

Query: 325 GMTEAA 330
           G  + A
Sbjct: 747 GRIQEA 752



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 124/304 (40%), Gaps = 42/304 (13%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---VSDC 61
           G  K   +A  +F+ M S+G+ P    Y++L+     + +   A + +  M+S   VSDC
Sbjct: 535 GVVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDC 594

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            P    YS++I S +K    ++ +K+  EM   G++   + Y  +I+ +  A   +E  +
Sbjct: 595 IP----YSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAIN 650

Query: 122 SFSAMVESG----------------------GCH------------PDIFTLNSMISAYG 147
             +AM   G                        H            P I++ N MI  Y 
Sbjct: 651 YVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPAIYSSNCMIDLYS 710

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
               +++ E+ +      G +A+  T  ++   Y + G   +   V   M+++     ++
Sbjct: 711 ERSMVKEAEEIFESLKKKG-EANEFTFAMMLCMYKKIGRIQEAICVARQMKEQGLLSDLL 769

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           ++N +I  +   G  ++    F++M    ++P+  TY SL     K G+  +  S L   
Sbjct: 770 SFNNMISLYAMDGRFKEAVSIFQEMMKAAVQPDECTYKSLGVVLLKCGVSKQAVSKLEVT 829

Query: 268 ENSD 271
              D
Sbjct: 830 AKKD 833


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 154/335 (45%), Gaps = 4/335 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK     +A  L   M    ++P+V +Y  +V    + GL+ EA    +D+       
Sbjct: 192 GLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVG-RGID 250

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+TY+ LI       ++  + ++L +M    +  +  TYN +ID   K     +    
Sbjct: 251 PDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDM 310

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M+E G   PD+ T N+++S Y    ++ +  K ++ F   G+  D+ + NIL   Y 
Sbjct: 311 RNLMIERGQ-RPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYC 369

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    D+  S+ + M  +   P +VTY+ +I+   K+G I    E F  +   G  PN I
Sbjct: 370 KNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVI 429

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  ++ A  K  L+ K   +   +    +  +   +N +I+ Y ++  +++   LF  M
Sbjct: 430 TYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEM 489

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             R+ VPD++T+  +I      G    A  L N M
Sbjct: 490 HRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVM 524



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 128/284 (45%), Gaps = 2/284 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q  + + L   M+   +  +V  Y  L+ A  + G+L +A    N M      +PD+ T+
Sbjct: 268 QWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQ-RPDLVTF 326

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + L+     ++      K+    +  GI     +YN +I GY K  + +E  S F+ M  
Sbjct: 327 NTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKM-N 385

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                P+I T +S+I     SG I    + ++  +  G   ++ T NI+  +  +  + D
Sbjct: 386 YKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVD 445

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K   + + M +R   P V +YNI+I  + K+  I++    F++M  R + P+S+TY  L+
Sbjct: 446 KAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLI 505

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
               K+G I     +   + +    +D   +N +  A+ +   V
Sbjct: 506 DGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQHV 549



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 152/405 (37%), Gaps = 78/405 (19%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI------------- 52
           K K    A  L + M   G+ PS+   + L++ Y   G +  AFS +             
Sbjct: 90  KMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAI 149

Query: 53  ---------------------NDMKSVSDCKPDVYTYSILIKSCTKF----HRFDLIEKI 87
                                +D         D  TY  LI    K       F+L+ K+
Sbjct: 150 TLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKM 209

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             ++    +  + V YN I+DG  K     E    +S +V   G  PD+FT   +I  + 
Sbjct: 210 EGQV----VRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGR-GIDPDVFTYTCLIHGFC 264

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK---MRSVM---------- 194
             G   ++ +   +     V  ++ T NIL  +  + GM  K   MR++M          
Sbjct: 265 GLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLV 324

Query: 195 -------------DFMQKRFFF---------PTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
                        D ++ R  F         P V +YNI+I  + K   I++    F KM
Sbjct: 325 TFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKM 384

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
            ++ + PN +TY SL+    K+G I     +   + +     +   +N ++ A  +   V
Sbjct: 385 NYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLV 444

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +K  ELF  M ER   P+  ++  +I  Y      + A NL  +M
Sbjct: 445 DKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEM 489



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 117/261 (44%), Gaps = 5/261 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V  +++++ S  K   +     +  +M   GI  S VT + +I+ Y        M  +
Sbjct: 76  PSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCH---LGHMGFA 132

Query: 123 FS--AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           FS   MV   G   +  TL +++     +G + K  ++++     G   D  T   L   
Sbjct: 133 FSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLING 192

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             + G+  +   ++  M+ +   P VV YN++++   K G + +  + +  +  RG+ P+
Sbjct: 193 LCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPD 252

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY  L+  +   G   +V  +L  + + +V L+   +N +I A  + G + K  ++  
Sbjct: 253 VFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRN 312

Query: 301 TMKERHCVPDNITFATMIQAY 321
            M ER   PD +TF T++  Y
Sbjct: 313 LMIERGQRPDLVTFNTLMSGY 333



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 1/240 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S V +N I+    K K +     S S  +   G  P I TL+ +I+ Y + G++      
Sbjct: 77  SVVEFNMILGSIVKMKHYPT-AISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSV 135

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
                  G + +  TL  + K     G   K     D +  + F    VTY  +I    K
Sbjct: 136 LGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCK 195

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
            G   +  E   KM+ + ++PN + Y  +V    K GL+ +   +   V    +  D   
Sbjct: 196 IGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFT 255

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + C+I  +   G   ++  L   M +R+   +  T+  +I A    GM   A ++ N MI
Sbjct: 256 YTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMI 315



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 61/135 (45%)

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P+VV +N+++ +  K  H        K+M  RG+ P+ +T   L++ Y   G +    S
Sbjct: 75  LPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFS 134

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           +L  V      L+      I+      G+V K  E   ++  +  + D +T+ T+I    
Sbjct: 135 VLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLC 194

Query: 323 ALGMTEAAQNLENKM 337
            +G+T  A  L +KM
Sbjct: 195 KIGLTREAFELLHKM 209


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 163/364 (44%), Gaps = 37/364 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+   +   M+  G  P + +Y  ++    + G L+ A   +N M S    KP+V  Y+ 
Sbjct: 316 ERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG-LKPNVVCYNT 374

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+K      R++  E++LAEM         VT+N ++D + +    + +      M+E G
Sbjct: 375 LLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHG 434

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKM-----------------------------EKWYNE 161
            C PD+ T  ++I+ +   G I++                              E+W + 
Sbjct: 435 -CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDA 493

Query: 162 FNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            +LM      G   +  T N L     + G+ ++   ++  M      P +++Y+ VI+ 
Sbjct: 494 EDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 553

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
            GKAG  ++  E    M ++GM PN+I Y S+ SA S+ G I KV  +   ++++ +  D
Sbjct: 554 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSD 613

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N +IS+  + G+ E+  E    M    CVP+  T+  +I+   + G  + AQ +  
Sbjct: 614 AVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLT 673

Query: 336 KMIA 339
           ++ +
Sbjct: 674 ELCS 677



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 37/339 (10%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           +++A    G +DEA   + D+ S   C+PDV +Y+ ++K      R+  +++++ EM  +
Sbjct: 235 VLNAICDQGSVDEALHLLRDLPSFG-CEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRM 293

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
               + VT+NT+I    +   FE +    + MVE G C PDI    ++I      G++E 
Sbjct: 294 ACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHG-CTPDIRMYATIIDGICKEGHLEV 352

Query: 155 MEKWYNEFNLMGVKADIQ-----------------------------------TLNILTK 179
             +  N     G+K ++                                    T NIL  
Sbjct: 353 AHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVD 412

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + + G+ D++  +++ M +    P V+TY  VI  F K G I++     K M   G KP
Sbjct: 413 FFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKP 472

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N+I+Y  ++     A   +  + ++ Q+      L+   FN +I+   + G VE+  EL 
Sbjct: 473 NTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELL 532

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M    C PD I+++T+I      G T+ A  L N M+
Sbjct: 533 KQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMV 571



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 140/315 (44%), Gaps = 2/315 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           + P+   Y  +V A    G + +A + +++M     C P    Y +++++  +   F   
Sbjct: 155 VPPNAYTYFPVVRALCARGRIADALAVLDEMPR-RGCAPIPPMYHVILEAACRGGGFRSA 213

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            ++L ++   G        N +++        +E       +  S GC PD+ + N+++ 
Sbjct: 214 VRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDL-PSFGCEPDVVSYNAVLK 272

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               +     +++   E   M    +I T N L     R G+++++  V+  M +    P
Sbjct: 273 GLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTP 332

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            +  Y  +I+   K GH+E   E   +M   G+KPN + Y +L+     A    + + +L
Sbjct: 333 DIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELL 392

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++ + D  LD   FN ++  + Q G V+++ EL   M E  C+PD IT+ T+I  +   
Sbjct: 393 AEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKE 452

Query: 325 GMTEAAQNLENKMIA 339
           G+ + A  L   M A
Sbjct: 453 GLIDEAVMLLKSMTA 467



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 4/235 (1%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           YN ++ GY +A + E      +A+       P+ +T   ++ A    G I       +E 
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAVPVP----PNAYTYFPVVRALCARGRIADALAVLDEM 185

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              G        +++ ++  R G +     V++ +  R     V   N+V+      G +
Sbjct: 186 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 245

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           ++     + +   G +P+ ++Y +++     A     V  ++ ++       +   FN +
Sbjct: 246 DEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 305

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           IS   + G  E++ E+   M E  C PD   +AT+I      G  E A  + N+M
Sbjct: 306 ISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 360



 Score = 45.8 bits (107), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 3/166 (1%)

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N +   Y RAG  +  R +   +      P   TY  V+      G I        +M  
Sbjct: 131 NAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 187

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           RG  P    Y  ++ A  + G       +L  +      LD    N +++A    G V++
Sbjct: 188 RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDE 247

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
              L   +    C PD +++  +++           Q L  +M+ M
Sbjct: 248 ALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRM 293



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 1/128 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + ++A  L  VM++ G+ P+  +Y+++ SA  + G +++     ++++  +  + 
Sbjct: 554 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTT-IRS 612

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   Y+ +I S  K    +   + LA M   G   +  TY  +I G       +E +   
Sbjct: 613 DAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEML 672

Query: 124 SAMVESGG 131
           + +   G 
Sbjct: 673 TELCSKGA 680


>gi|449518091|ref|XP_004166077.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g23020-like [Cucumis sativus]
          Length = 859

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 161/334 (48%), Gaps = 6/334 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  Q ++AS  FE ML +G+ P+   +  ++   G  G L E    +  M+ +  C PD
Sbjct: 328 GKAGQLKEASTTFENMLKEGVSPTTVTFNTMIHICGNHGQLKEVTFLMQKMEELQ-CPPD 386

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ILI    K    DL     AEM   G++   V+Y T++  Y       E E   +
Sbjct: 387 TRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSIRHMVAEAEKLIT 446

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGR 183
            M E G    D FT +++   Y ++G +E+   W+  F+L G + ++  + NI   +YG 
Sbjct: 447 EMDERG-LEIDEFTQSALTRMYIDAGMLEESWSWFWRFHLAGHMSSECYSANI--DAYGE 503

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   +   V    Q+     TV+ +N++I+ +G      K ++ F  MK  G+ P+  +
Sbjct: 504 RGFILEAERVFVSCQEEKKC-TVLEFNVMIKAYGVVKDYAKAQKIFDSMKSNGVVPDKCS 562

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL+   + A +     + L++++++ ++ D   ++ +IS++ + G +E   +L+  M 
Sbjct: 563 YSSLIQILTGADMPAMALAYLKKMQSAGLVSDCIPYSVVISSFSKLGHLEMADKLYREMV 622

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +    PD I +  +I A+   G  + A N  N M
Sbjct: 623 KHGVQPDIIVYGVLINAFADAGSVKEAINYVNAM 656



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 155/395 (39%), Gaps = 66/395 (16%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK ++      L+  M   G+KP    Y  L+  Y + G  +EA   +  M      +P
Sbjct: 197 LGKAQKWRLVESLWVEMNKKGIKPINSTYGTLIDVYSKGGFKEEALVWLERMNE-QGMEP 255

Query: 64  DVYTYSILIKSCTKFHRFDLIE-------------------------KILAEMSYLGIEC 98
           D  T  I+++   K   F   E                         K+ + +    +  
Sbjct: 256 DEVTMGIVVQLYKKAGEFQKAESFFKKWSSCNSMKYEITNKKKAASVKVESSLHPPHVSL 315

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S  TYNT+ID YGKA + +E  ++F  M++  G  P   T N+MI   GN G ++++   
Sbjct: 316 STYTYNTLIDTYGKAGQLKEASTTFENMLKE-GVSPTTVTFNTMIHICGNHGQLKEVTFL 374

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             +   +    D +T NIL   Y +    D   +    M++    P +V+Y  ++  +  
Sbjct: 375 MQKMEELQCPPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGLQPDIVSYRTLLYAYSI 434

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSIT----------------------------------Y 244
              + + E+   +M  RG++ +  T                                  Y
Sbjct: 435 RHMVAEAEKLITEMDERGLEIDEFTQSALTRMYIDAGMLEESWSWFWRFHLAGHMSSECY 494

Query: 245 CSLVSAYSKAGLIMKVDSILR--QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            + + AY + G I++ + +    Q E    +L+   FN +I AYG   D  K  ++F +M
Sbjct: 495 SANIDAYGERGFILEAERVFVSCQEEKKCTVLE---FNVMIKAYGVVKDYAKAQKIFDSM 551

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           K    VPD  +++++IQ      M   A     KM
Sbjct: 552 KSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKM 586



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 144/330 (43%), Gaps = 37/330 (11%)

Query: 34  ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMS 92
           A++ A  +   LDEA     D       K +    SI++K  T + R  ++ E       
Sbjct: 130 AILQALDEISDLDEALKPWKD-------KLNNKERSIILKEQTSWERALEIFEWFNMAGC 182

Query: 93  YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152
           Y   E + + YN ++   GKA+K+  +ES +  M    G  P   T  ++I  Y   G  
Sbjct: 183 Y---EVNVIHYNIVLGTLGKAQKWRLVESLWVEM-NKKGIKPINSTYGTLIDVYSKGGFK 238

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS-------------------- 192
           E+   W    N  G++ D  T+ I+ + Y +AG + K  S                    
Sbjct: 239 EEALVWLERMNEQGMEPDEVTMGIVVQLYKKAGEFQKAESFFKKWSSCNSMKYEITNKKK 298

Query: 193 -----VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                V   +       +  TYN +I+T+GKAG +++    F+ M   G+ P ++T+ ++
Sbjct: 299 AASVKVESSLHPPHVSLSTYTYNTLIDTYGKAGQLKEASTTFENMLKEGVSPTTVTFNTM 358

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +      G + +V  +++++E      DT  +N +IS Y +  +++     F  M+E   
Sbjct: 359 IHICGNHGQLKEVTFLMQKMEELQCPPDTRTYNILISLYAKHDNIDLASNYFAEMEEAGL 418

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKM 337
            PD +++ T++ AY+   M   A+ L  +M
Sbjct: 419 QPDIVSYRTLLYAYSIRHMVAEAEKLITEM 448



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 133/292 (45%), Gaps = 3/292 (1%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           K +V  +  ++ AYG      +A    + MKS +   PD  +YS LI+  T      +  
Sbjct: 522 KCTVLEFNVMIKAYGVVKDYAKAQKIFDSMKS-NGVVPDKCSYSSLIQILTGADMPAMAL 580

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
             L +M   G+    + Y+ +I  + K    E  +  +  MV+ G   PDI     +I+A
Sbjct: 581 AYLKKMQSAGLVSDCIPYSVVISSFSKLGHLEMADKLYREMVKHG-VQPDIIVYGVLINA 639

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           + ++G++++   + N     G+  +    N L K Y + G   +       +++    P 
Sbjct: 640 FADAGSVKEAINYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPA 699

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           + + N +I+ + +   +++ EE F+ +K +G + N  T+  ++  Y K G I +   + R
Sbjct: 700 IYSSNCMIDLYSERSMVKEAEEIFESLKKKG-EANEFTFAMMLCMYKKIGRIQEAICVAR 758

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           Q++   ++ D   FN +IS Y   G  ++   +F  M +    PD  T+ ++
Sbjct: 759 QMKEQGLLSDLLSFNNMISLYAMDGRFKEAVSIFQEMMKAAVQPDECTYKSL 810



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 129/306 (42%), Gaps = 45/306 (14%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           S + Y+A + AYG+ G + EA       +    C   V  ++++IK+      +   +KI
Sbjct: 490 SSECYSANIDAYGERGFILEAERVFVSCQEEKKCT--VLEFNVMIKAYGVVKDYAKAQKI 547

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
              M   G+     +Y+++I     A     M  ++   ++S G   D    + +IS++ 
Sbjct: 548 FDSMKSNGVVPDKCSYSSLIQILTGAD-MPAMALAYLKKMQSAGLVSDCIPYSVVISSFS 606

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G++E  +K Y E    GV+ DI                                   +
Sbjct: 607 KLGHLEMADKLYREMVKHGVQPDI-----------------------------------I 631

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            Y ++I  F  AG +++   Y   MK  G+  N++ Y SL+  Y+K G + +     + +
Sbjct: 632 VYGVLINAFADAGSVKEAINYVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKML 691

Query: 268 ENSDVILDTPFF---NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           E +D   D P     NC+I  Y +   V++  E+F ++K++    +  TFA M+  Y  +
Sbjct: 692 EQTD---DGPAIYSSNCMIDLYSERSMVKEAEEIFESLKKKG-EANEFTFAMMLCMYKKI 747

Query: 325 GMTEAA 330
           G  + A
Sbjct: 748 GRIQEA 753



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 124/304 (40%), Gaps = 42/304 (13%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---VSDC 61
           G  K   +A  +F+ M S+G+ P    Y++L+     + +   A + +  M+S   VSDC
Sbjct: 536 GVVKDYAKAQKIFDSMKSNGVVPDKCSYSSLIQILTGADMPAMALAYLKKMQSAGLVSDC 595

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            P    YS++I S +K    ++ +K+  EM   G++   + Y  +I+ +  A   +E  +
Sbjct: 596 IP----YSVVISSFSKLGHLEMADKLYREMVKHGVQPDIIVYGVLINAFADAGSVKEAIN 651

Query: 122 SFSAMVESG----------------------GCH------------PDIFTLNSMISAYG 147
             +AM   G                        H            P I++ N MI  Y 
Sbjct: 652 YVNAMKRDGLSGNTVIYNSLIKLYTKVGYLKEAHEAYKMLEQTDDGPAIYSSNCMIDLYS 711

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
               +++ E+ +      G +A+  T  ++   Y + G   +   V   M+++     ++
Sbjct: 712 ERSMVKEAEEIFESLKKKG-EANEFTFAMMLCMYKKIGRIQEAICVARQMKEQGLLSDLL 770

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           ++N +I  +   G  ++    F++M    ++P+  TY SL     K G+  +  S L   
Sbjct: 771 SFNNMISLYAMDGRFKEAVSIFQEMMKAAVQPDECTYKSLGVVLLKCGVSKQAVSKLEVT 830

Query: 268 ENSD 271
              D
Sbjct: 831 XKKD 834


>gi|410110105|gb|AFV61132.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           aristata]
          Length = 382

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTL 81

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S + +D   F  +I AY
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAY 260

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 261 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 135/274 (49%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  GEM-KAAGVMPNTXSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D I F TMI AY   G+   A+ L +++
Sbjct: 243 SSGIEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 155/356 (43%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+   
Sbjct: 27  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA-AGVMPNTXSYSTLLTMY 85

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 144

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 145 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYE 261

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 321

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I    +      + E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 322 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKLQEFDKANDVYMEM 377



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 31/262 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 179

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K       F+
Sbjct: 180 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 239

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        F  M+   E  G              PD    ++ I     +G IE+
Sbjct: 240 KLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEE 299

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +     +   Y  +  V D M+   +FP      IV+ 
Sbjct: 300 ATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLN 359

Query: 215 TFGKAGHIEKMEEYFKKMKHRG 236
            +GK    +K  + + +M+  G
Sbjct: 360 AYGKLQEFDKANDVYMEMQEVG 381


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 158/373 (42%), Gaps = 40/373 (10%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CKQ +      LFE ML +G+ P    Y  L+  Y + G +DEA     +M SV   +P 
Sbjct: 19  CKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVG-LEPS 77

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF-EEMESSF 123
           +YTY+ L+ +  K  +     ++   M+  G E   VTY+TII G  K  K  E +E  F
Sbjct: 78  IYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLF 137

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+E G C  +    N++I+      NIE+  K   E    G   D  T N +     R
Sbjct: 138 HKMIERG-CSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCR 196

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG----------------------- 220
            G   + +   D M  R + P VV YN +++   K G                       
Sbjct: 197 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVT 256

Query: 221 ------------HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
                       ++++ EE FKKM   G  PN  TY  ++S + +A  +     +L ++ 
Sbjct: 257 YNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMS 316

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
               + D   +N ++    +   V+K  ELF TM +  C PD ++++ ++          
Sbjct: 317 KIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVH 376

Query: 329 AAQNLENKMIAMK 341
            A+ L ++MI  K
Sbjct: 377 DARVLFDRMIERK 389



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 150/372 (40%), Gaps = 39/372 (10%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+ +  +A  LF+ M   G +P V  Y+ ++S   ++G + EA   +        C  +
Sbjct: 89  CKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSAN 148

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+ LI    K    +   K+L EM+  G     +TYNTI+ G  +  K  E +  F 
Sbjct: 149 TVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFD 208

Query: 125 AMVESG----------------------------------GCHPDIFTLNSMISAYGNSG 150
           +M   G                                  G  PD  T NS++       
Sbjct: 209 SMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKS 268

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           N+++ E+ + +    G   +  T +I+   + RA   D    V++ M K    P VVTYN
Sbjct: 269 NMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYN 328

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           I+++   K   ++K  E F  M   G  P+ ++Y  +++   K   +     +  ++   
Sbjct: 329 ILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIER 388

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            ++ D   FN ++    +AG +++  +L   M    C PD + + T++      G    A
Sbjct: 389 KLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQA 448

Query: 331 QNLENKMIAMKE 342
             L     AMKE
Sbjct: 449 DRLTQ---AMKE 457



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 135/308 (43%), Gaps = 4/308 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    E+A  L E M S G  P    Y  ++S   + G + EA    + M S     
Sbjct: 158 GLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPS-RGYS 216

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV  Y+ L+ +  K  + D   K+  ++   G     VTYN+I+ G  +    +E E  
Sbjct: 217 PDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEM 276

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV SG C P+  T + ++S +  +  ++   K   E + +G   D+ T NIL     
Sbjct: 277 FKKMVASG-CAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLC 335

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +  + DK   +   M      P +V+Y++V+    K   +      F +M  R + P+ +
Sbjct: 336 KTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVV 395

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+  L+    KAG + +   +L Q+  S    D   +N +++   + G   +   L   M
Sbjct: 396 TFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAM 455

Query: 303 KERHCVPD 310
           KE+  + D
Sbjct: 456 KEKGFLSD 463



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 122/281 (43%), Gaps = 37/281 (13%)

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +C P+ YT+ +++KS  K  +     K+  +M   GI    + YN +IDGY K  + +E 
Sbjct: 3   ECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEA 62

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              +  MV S G  P I+T NS+++A+       KM++    F  M  K           
Sbjct: 63  NRLYEEMV-SVGLEPSIYTYNSLLNAFCKE---TKMKEAMELFKTMAEKG---------- 108

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI-EKMEEYFKKMKHRGMK 238
                                 F P VVTY+ +I    K G + E +E  F KM  RG  
Sbjct: 109 ----------------------FEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCS 146

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            N++ Y +L++   K   I +   +L ++ +   + D   +N I+S   + G V +  + 
Sbjct: 147 ANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQF 206

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           F +M  R   PD + +  ++ A    G T+ A  L   +IA
Sbjct: 207 FDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIA 247


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 145/310 (46%), Gaps = 1/310 (0%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           VY  L++   + G + EA     +  +     P+ +T++ILI+   +    +   ++   
Sbjct: 165 VYNYLLNELVKGGKVHEAIFLFKENLAFHS-PPNTWTFNILIRGLCRVGEVEKGFELFNA 223

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M   G     VTYNT+I G  KA + +        +     C PD+ T  S+IS +   G
Sbjct: 224 MQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLG 283

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            +E     + E    G++  + T N+L   +G+ G      ++ + M      P VVT+ 
Sbjct: 284 KLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFT 343

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I+ + + G I    + +  MK R + PN  TY  +++A  K   I +   +LRQ++ S
Sbjct: 344 SLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCS 403

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           DV      +N +I  + +AG+V++   +   M+E+ C PD +TF  +I  +   G    A
Sbjct: 404 DVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEA 463

Query: 331 QNLENKMIAM 340
            ++  KM+A+
Sbjct: 464 LDIFKKMLAI 473



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 38/320 (11%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G C+  + E+   LF  M S G  P V  Y  L+S   ++  LD A   + +++S 
Sbjct: 203 ILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSR 262

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +DC PDV TY+ +I    K  + +    +  EM   GIE + VT+N +IDG+GK      
Sbjct: 263 NDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVA 322

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E+    M  S  C PD+ T  S+I  Y  +G+I            +G+K          
Sbjct: 323 AEAMHEKMA-SYSCIPDVVTFTSLIDGYCRTGDIR-----------LGLK---------- 360

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                         V D M+ R   P + TY+++I    K   I +  +  +++K   + 
Sbjct: 361 --------------VWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVF 406

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P    Y  ++  + KAG + + + I+ ++E      D   F  +I  +   G + +  ++
Sbjct: 407 PKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDI 466

Query: 299 FLTMKERHCVPDNITFATMI 318
           F  M    C PDNIT ++++
Sbjct: 467 FKKMLAIGCAPDNITISSLV 486



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 36/204 (17%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKR--------------------------FFF 203
           D + L  L  S+ +AG +D  + ++  +Q                            F F
Sbjct: 127 DSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLF 186

Query: 204 ---------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
                    P   T+NI+I    + G +EK  E F  M+  G  P+ +TY +L+S   KA
Sbjct: 187 KENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKA 246

Query: 255 GLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
             + +   +L++V++ +D   D   +  IIS + + G +E    LF  M      P  +T
Sbjct: 247 NELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVT 306

Query: 314 FATMIQAYNALGMTEAAQNLENKM 337
           F  +I  +  +G   AA+ +  KM
Sbjct: 307 FNVLIDGFGKIGNMVAAEAMHEKM 330


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 162/322 (50%), Gaps = 2/322 (0%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F+ M  +G  P+V  Y  ++  Y +    DEAF  +  M  +   +P++ T++++I    
Sbjct: 6   FKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSM-GLKGLEPNLITFNMIINGLC 64

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           +  R     ++L EMS  G     VTYNT+++GY K   F +     + MV +G   P++
Sbjct: 65  RDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNG-LSPNV 123

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            T  S+I++   +GN+ +  +++++ ++ G+  + +T   +   + + G+ D+   V++ 
Sbjct: 124 VTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNE 183

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M +  F P++VTYN +I      G +E+     + M  +G+ P+ ++Y +++S +++   
Sbjct: 184 MTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQE 243

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + +   +  ++    V+ D   ++ +I    +   + +  ++F  M      PD  T+ T
Sbjct: 244 LDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTT 303

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           +I AY   G    A +L ++MI
Sbjct: 304 LINAYCKEGDLNKALHLHDEMI 325



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 149/332 (44%), Gaps = 21/332 (6%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A   F+ M   GL P+   YT +++ + Q GLLDEA+  +N+M + S   P + TY+ L
Sbjct: 141 RAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEM-TRSGFIPSIVTYNAL 199

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R +    +L +M   G+    V+Y+TII G+ +    +E++ +F   VE  G
Sbjct: 200 INGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARN---QELDRAFQMKVEMIG 256

Query: 132 --CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
               PD  T +S+I        + +    + E   + +  D  T   L  +Y + G  +K
Sbjct: 257 KSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNK 316

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY----- 244
              + D M ++ F P  VTYN++I    K    ++      K+ +    P+++TY     
Sbjct: 317 ALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIE 376

Query: 245 ----------CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
                      +LV  +   GL+ + D +   + N +   +   +N II  + + G+V K
Sbjct: 377 NCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLK 436

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGM 326
             +L+  M     VP  +T   +++A    GM
Sbjct: 437 AYKLYKEMVHVDFVPHTVTVLALVKALFTEGM 468



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 5/238 (2%)

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--GCHPDIFTLNSMI 143
           +   EM   G   + VTYNT+IDGY K K+ +E   +F  +   G  G  P++ T N +I
Sbjct: 4   RFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDE---AFGFLRSMGLKGLEPNLITFNMII 60

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           +     G +++  +   E +  G   D  T N L   Y + G + +   +   M +    
Sbjct: 61  NGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLS 120

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVTY  +I +  KAG++ +  E+F +M  RG+ PN  TY ++++ +++ GL+ +   +
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           L ++  S  I     +N +I+ +   G +E+   L   M  +  +PD ++++T+I  +
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGF 238



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 142/322 (44%), Gaps = 6/322 (1%)

Query: 1   MVMLGKCKQ---PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           M++ G C+     E + +L E M   G  P    Y  LV+ Y + G   +A     +M  
Sbjct: 58  MIINGLCRDGRLKETSEVLVE-MSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVR 116

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            +   P+V TY+ LI S  K    +   +   +M   G+  +  TY TII+G+ +    +
Sbjct: 117 -NGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLD 175

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E     + M  SG   P I T N++I+ +   G +E+      +    GV  D+ + + +
Sbjct: 176 EAYRVLNEMTRSGFI-PSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTI 234

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              + R    D+   +   M  +   P  VTY+ +I+   +   + +  + F++M    +
Sbjct: 235 ISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKL 294

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P+  TY +L++AY K G + K   +  ++     + D   +N +I+   +    ++   
Sbjct: 295 PPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARR 354

Query: 298 LFLTMKERHCVPDNITFATMIQ 319
           L L +     +P  +T+ T+I+
Sbjct: 355 LLLKLFYDDSIPSAVTYNTLIE 376



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 99/221 (44%)

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           M   F   +E  GC P++ T N+MI  Y      ++   +     L G++ ++ T N++ 
Sbjct: 1   MGLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMII 60

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               R G   +   V+  M ++ + P  VTYN ++  + K G+  +      +M   G+ 
Sbjct: 61  NGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLS 120

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN +TY SL+++  KAG + +      Q+    +  +   +  II+ + Q G +++   +
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              M     +P  +T+  +I  +  LG  E A  L   M+ 
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVG 221


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 150/323 (46%), Gaps = 3/323 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M     +P V  YT L+   G++G  DEA++  ++M+    C+PD    + +I   
Sbjct: 283 LFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRR-EGCRPDTVVINNMINFL 341

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHP 134
            K  R D   K+  EM  L    S VTYNTII    ++K +  E+ S F  M +  G  P
Sbjct: 342 GKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERM-KGSGISP 400

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
             FT + +I  +  +   EK      E +  G          L  + G+A  YD    + 
Sbjct: 401 SPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELF 460

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             +++     +   Y ++I+  GKAG ++     F +M   G  PN   Y +L+S  ++A
Sbjct: 461 QELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARA 520

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G++ +  + +R+++    I D   +N I++   + G   +  E+   MK+    PD +++
Sbjct: 521 GMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSY 580

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
            T++ A +  G+ E A  L  +M
Sbjct: 581 NTVLGAMSHAGLFEEAAKLMKEM 603



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 150/343 (43%), Gaps = 16/343 (4%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLG  K   +A  +F  +     +P+   Y +++      G  ++     N+M +   C 
Sbjct: 164 MLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCF 223

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DGYGKAKK 115
           PD  TYS LI +  K  R D   ++L EM   G++ +A  Y  +I       + +G    
Sbjct: 224 PDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGL 283

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           FEEM   +        C PD+FT   +I   G +G  ++   +++E    G + D   +N
Sbjct: 284 FEEMRHQY--------CRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVIN 335

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKH 234
            +    G+AG  D    + + M      P+VVTYN +I+  F     I ++  +F++MK 
Sbjct: 336 NMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKG 395

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+ P+  TY  L+  + K     K   +L +++          +  +I A G+A   + 
Sbjct: 396 SGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDI 455

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             ELF  +KE         +A MI+     G  + A NL ++M
Sbjct: 456 AHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEM 498



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 135/287 (47%), Gaps = 5/287 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVSDCK 62
           LGK  + + A  LFE M +    PSV  Y  ++ A  +S   + E  S    MK  S   
Sbjct: 341 LGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKG-SGIS 399

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++     
Sbjct: 400 PSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHEL 459

Query: 123 FSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F  + E+ G     ++ +  MI   G +G ++     ++E N +G   ++   N L    
Sbjct: 460 FQELKENCGSSSARVYAV--MIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGL 517

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            RAGM D+  + M  MQ+    P + +YNI++    K G   +  E    MK   +KP++
Sbjct: 518 ARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDA 577

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           ++Y +++ A S AGL  +   +++++       D   ++ I+ A G+
Sbjct: 578 VSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGK 624



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 6/220 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 61
           G CK  + E+A +L E M   G  P    Y +L+ A G++   D A     ++K   +C 
Sbjct: 411 GFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKE--NCG 468

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
                 Y+++IK   K  R D    +  EM+ LG   +   YN ++ G  +A   +E  +
Sbjct: 469 SSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALT 528

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           +   M E G C PDI + N +++    +G   +  +  +      +K D  + N +  + 
Sbjct: 529 TMRRMQEHG-CIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAM 587

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
             AG++++   +M  M    F   ++TY+ ++E  GK  H
Sbjct: 588 SHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKVDH 627



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 1/237 (0%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           TY  +I      +++ EM      MV +  C      L+ +I   GN+  I K    + +
Sbjct: 121 TYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQ 180

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAG 220
             +   +   Q  N +       G Y+K+  + + M      FP  VTY+ +I  F K G
Sbjct: 181 IKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLG 240

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
             +       +MK  GM+P +  Y  L++ + K   +     +  ++ +     D   + 
Sbjct: 241 RQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYT 300

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +I   G+AG  ++    F  M+   C PD +    MI      G  + A  L  +M
Sbjct: 301 ELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEM 357


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 148/321 (46%), Gaps = 7/321 (2%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G C+  Q E+A  L   M   G  P   +Y AL+S Y ++    +AF  + +M   
Sbjct: 15  ILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVK- 73

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           + C P V TY+ ++    K  R     K+L EM   G   +  TYN I++G  + +K +E
Sbjct: 74  NHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDE 133

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            +     M   G   PD+ T NS I        +++  K+      M V  D+ +   + 
Sbjct: 134 AKKMLEEMAVRGY-FPDVVTYNSFIKGLCKCDRVDEARKFLAR---MPVTPDVVSYTTVI 189

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               ++G  D    ++D M  R   P VVTY+ +I+ F K G +E+       M   G +
Sbjct: 190 NGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCR 249

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN + Y SL+ A  + G I K + +L ++E      D   +N  I    +A  V+K   +
Sbjct: 250 PNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAV 309

Query: 299 FLTMKERHCVPDNITFATMIQ 319
           F  M ER C P+  +++ +++
Sbjct: 310 FDRMVERGCTPNASSYSMLVE 330



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 149/337 (44%), Gaps = 8/337 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + + A  L + M   G  P++  Y  +V    +   LDEA   + +M +V    
Sbjct: 89  GLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEM-AVRGYF 147

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TY+  IK   K  R D   K LA M    +    V+Y T+I+G  K+   +     
Sbjct: 148 PDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRM 204

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M   G C PD+ T +S+I  +   G +E+     +    +G + ++   N L  +  
Sbjct: 205 LDQMTNRG-CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALH 263

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G   K   ++  M++R F P VV+YN  I+   KA  ++K +  F +M  RG  PN+ 
Sbjct: 264 RLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNAS 323

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF-LT 301
           +Y  LV    K   +    +++ Q      I+D   +  ++    + G  ++   LF   
Sbjct: 324 SYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKV 383

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + E+ C PD   +  M+ ++      + A  +  +M+
Sbjct: 384 LDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQML 420



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 136/273 (49%), Gaps = 4/273 (1%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+PD +T++IL++   + ++ +   ++L  M  +G       YN +I GY KAK F +  
Sbjct: 6   CQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAF 65

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              + MV++  C P + T  +++     +G  +   K  +E    G   +I T N++ + 
Sbjct: 66  KFLAEMVKN-HCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEG 124

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                  D+ + +++ M  R +FP VVTYN  I+   K   +++  ++  +M    + P+
Sbjct: 125 LCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPD 181

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ++Y ++++   K+G +     +L Q+ N     D   ++ +I  + + G+VE+   L  
Sbjct: 182 VVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLD 241

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +M +  C P+ + + +++ A + LG    A+++
Sbjct: 242 SMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDM 274



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 156/336 (46%), Gaps = 5/336 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K   QA      M+ +   P+V  YT +V    ++G   +A   +++M+    C P++
Sbjct: 57  KAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRD-KGCSPNI 115

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YTY+++++   +  + D  +K+L EM+  G     VTYN+ I G  K  + +E     + 
Sbjct: 116 YTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLAR 175

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M  +    PD+ +  ++I+    SG+++   +  ++    G   D+ T + L   + + G
Sbjct: 176 MPVT----PDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGG 231

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             ++   ++D M K    P +V YN ++    + GHI K E+   +M+ RG  P+ ++Y 
Sbjct: 232 EVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYN 291

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           + +    KA  + K  ++  ++       +   ++ ++    +  +++    L    +E+
Sbjct: 292 ACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREK 351

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           + + D + +  ++      G  + A  L +K++  K
Sbjct: 352 YQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEK 387



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 156/343 (45%), Gaps = 14/343 (4%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK  +   AS + + M + G  P V  Y++L+  + + G ++ A   ++ M  + 
Sbjct: 188 VINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLG 247

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C+P++  Y+ L+ +  +       E +L EM   G     V+YN  IDG  KA++ ++ 
Sbjct: 248 -CRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKA 306

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK----MEKWYNEFNLMGVKADIQTLN 175
           ++ F  MVE G C P+  + + ++        ++     +E+   ++ ++    DI    
Sbjct: 307 KAVFDRMVERG-CTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIV----DILLYT 361

Query: 176 ILTKSYGRAGMYDKMRSVMD-FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           +L     + G +D+  ++    + ++   P V  YN+++++  K   I+K  +  K+M  
Sbjct: 362 VLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE 421

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           R    N +T+  LV        +   +++L  + +   I D   +  ++ A  + G    
Sbjct: 422 RNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAA 480

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             ELF    +  CVPD +T++ +I       M E A  L  K+
Sbjct: 481 ALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL 523



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 108/242 (44%), Gaps = 4/242 (1%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
            A T+  ++ G  ++ + E+       M E G C PD    N++IS Y  + +  +  K+
Sbjct: 9   DAFTFAILLRGLCRSNQLEKARQLLGRMKEMG-CVPDDAIYNALISGYSKAKDFGQAFKF 67

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             E         + T   +     +AG       ++D M+ +   P + TYN+++E   +
Sbjct: 68  LAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 127

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
              +++ ++  ++M  RG  P+ +TY S +    K     +VD   + +    V  D   
Sbjct: 128 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCD---RVDEARKFLARMPVTPDVVS 184

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  +I+   ++GD++    +   M  R C PD +T++++I  +   G  E A  L + M+
Sbjct: 185 YTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSML 244

Query: 339 AM 340
            +
Sbjct: 245 KL 246



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 126/301 (41%), Gaps = 17/301 (5%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD- 82
           G  P V  Y A +    ++  + +A +  + M     C P+  +YS+L++   K    D 
Sbjct: 282 GFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVE-RGCTPNASSYSMLVEELCKKKELDD 340

Query: 83  ---LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
              L+E+   +   + I    + Y  ++DG  K  +F+E  + FS +++   C PD+F  
Sbjct: 341 AITLVEQAREKYQIVDI----LLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFY 396

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N M+ ++     I+K  + + +  L     ++ T NIL              +++  M  
Sbjct: 397 NVMLDSHCKRRQIDKALQIHKQM-LERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVD 455

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
             F P  VTY  +++   K G      E F++    G  P+ +TY +L++      +  +
Sbjct: 456 EGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEE 515

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +  +       LD   +N +I  Y + G  +   +LF+ + E    P+  TF   I 
Sbjct: 516 AYLLFTK-------LDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEIS 568

Query: 320 A 320
            
Sbjct: 569 G 569



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 121/280 (43%), Gaps = 20/280 (7%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +YT L+    + G  DEA +  + +     C+PDV+ Y++++ S  K  + D   +I  +
Sbjct: 359 LYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQ 418

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M      C+ VT+N ++ G     +  + E+    MV+ G   PD  T  +++ A    G
Sbjct: 419 MLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFI-PDFVTYGTLVDAMCKCG 476

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
                 + + E    G   D+ T + L        M ++   +       F    V  +N
Sbjct: 477 KSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLL-------FTKLDVALWN 529

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I  + + G  +   + F ++    ++PN+ T+   +S     G ++K +S+ +     
Sbjct: 530 AMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEIS-----GKLVKAESLGKARGLF 584

Query: 271 DVILDTPFF------NCIISAYGQAGDVEKMGELFLTMKE 304
           D  +   FF      N +I  + + GD+E+   +F +MK+
Sbjct: 585 DRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 105/262 (40%), Gaps = 35/262 (13%)

Query: 5   GKCK--QPEQASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           G CK  + ++A  LF  +L + + +P V  Y  ++ ++ +   +D+A      M   + C
Sbjct: 366 GLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC 425

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
             +V T++IL+       R    E +L  M   G     VTY T++D   K  K      
Sbjct: 426 --NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALE 483

Query: 122 SFSAMVESGGCHPDIFT----------------------------LNSMISAYGNSGNIE 153
            F   V+ GGC PD+ T                             N+MI  Y  +G+ +
Sbjct: 484 LFEEAVK-GGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGD 542

Query: 154 KMEKWYNEFNLMGVKADIQTLNI-LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
              K + E     V+ + +T    ++    +A    K R + D   K  FFP +   N +
Sbjct: 543 LGLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTL 602

Query: 213 IETFGKAGHIEKMEEYFKKMKH 234
           I+ F K G +E+    F  MK 
Sbjct: 603 IDVFAKCGDLEEARRIFYSMKQ 624



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/106 (21%), Positives = 51/106 (48%)

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M  +  +P++ T+  L+    ++  + K   +L +++    + D   +N +IS Y +A D
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +  +    M + HC+P  +T+  ++      G T+ A  L ++M
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEM 106


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 132/258 (51%), Gaps = 5/258 (1%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +FE M   GL+P+V  Y +L++    +G LDEA   + D  S    KP+V TY+ LI
Sbjct: 318 AKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALG-LQDKMSGMGLKPNVVTYNALI 376

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K        ++L ++   G+  + +T+NT+ID YGKA + ++     S M+++G C
Sbjct: 377 NGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC 436

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            P++ T N +I  +   GN+++  K   E    G+KAD+ T NIL  +  + G   K   
Sbjct: 437 -PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVR 495

Query: 193 VMD---FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           ++D    M+K+     +VTYN++I+ F   G +E+      +M  +G+ PN  TY  L  
Sbjct: 496 LLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD 555

Query: 250 AYSKAGLIMKVDSILRQV 267
              + G I  +D  L  V
Sbjct: 556 EMMEKGFIPDIDGHLYNV 573



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 2/284 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V T+ ++I    K  +F     ++ +M   G   S +TYNTIIDGY KA K  + ++  
Sbjct: 228 NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALL 287

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV +   HP+  T N +I  +    N+   +K + E    G++ ++ T N L      
Sbjct: 288 KEMV-AKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCS 346

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+   + D M      P VVTYN +I  F K   +++  E    +  RG+ PN IT
Sbjct: 347 NGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVIT 406

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +L+ AY KAG +     +   + ++ V  +   +NC+I  + + G+V++  +L   M+
Sbjct: 407 FNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEME 466

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
                 D +T+  ++ A    G T  A  L ++M  M E  G++
Sbjct: 467 GNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLM-EKKGRR 509



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 156/322 (48%), Gaps = 13/322 (4%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G CK  + ++A  + E M + G  PSV  Y  ++  Y ++G + +A + + +M + 
Sbjct: 234 VVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVA- 292

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               P+  T++ILI    +       +K+  EM   G++ + VTYN++I+G     K +E
Sbjct: 293 KRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDE 352

Query: 119 ---MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
              ++   S M    G  P++ T N++I+ +     +++  +  ++    G+  ++ T N
Sbjct: 353 ALGLQDKMSGM----GLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L  +YG+AG  D    +   M      P V TYN +I  F + G++++  +  K+M+  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQ---VENSDVILDTPFFNCIISAYGQAGDV 292
           G+K + +TY  LV A  K G   K   +L +   +E      +   +N +I  +   G +
Sbjct: 469 GLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKL 528

Query: 293 EKMGELFLTMKERHCVPDNITF 314
           E+   L   M E+  +P+  T+
Sbjct: 529 EEANRLLNEMLEKGLIPNRTTY 550



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 139/309 (44%), Gaps = 14/309 (4%)

Query: 35  LVSAYGQSGLLD---EAFSTINDMK---SVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88
           LV AY ++G +D   E F    D     S   C P       ++ S  K  R  ++E + 
Sbjct: 165 LVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNP-------MLVSLVKEGRIGVVESVY 217

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            EM    I  + VT++ +I+G  K  KF++       M ++ G  P + T N++I  Y  
Sbjct: 218 KEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM-KAWGFSPSVITYNTIIDGYCK 276

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +G + K +    E     +  +  T NIL   + R       + V + MQ++   P VVT
Sbjct: 277 AGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVT 336

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +I      G +++      KM   G+KPN +TY +L++ + K  ++ +   +L  + 
Sbjct: 337 YNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIG 396

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              +  +   FN +I AYG+AG ++    L   M +    P+  T+  +I  +   G  +
Sbjct: 397 KRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVK 456

Query: 329 AAQNLENKM 337
            A+ L  +M
Sbjct: 457 EARKLAKEM 465



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 122/264 (46%), Gaps = 5/264 (1%)

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTI---IDGYGKAKKFEEMESSFS-AMVESGGCHPDI 136
           F  I  +      L +  +A  YN I   +D + K   +       S +++ S GC   I
Sbjct: 101 FGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSI 160

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
             ++ ++ AY  +G ++   + ++     G +    + N +  S  + G    + SV   
Sbjct: 161 I-VDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKE 219

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M +R     VVT+++VI    K G  +K  +  + MK  G  P+ ITY +++  Y KAG 
Sbjct: 220 MIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGK 279

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + K D++L+++    +  +   FN +I  + +  +V    ++F  M+ +   P+ +T+ +
Sbjct: 280 MFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNS 339

Query: 317 MIQAYNALGMTEAAQNLENKMIAM 340
           +I    + G  + A  L++KM  M
Sbjct: 340 LINGLCSNGKLDEALGLQDKMSGM 363



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 86/203 (42%), Gaps = 21/203 (10%)

Query: 157 KWYN-EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY------ 209
           KW   EF   G   +++    L      A  Y+K+R+++D   K   +     +      
Sbjct: 95  KWTQKEF---GAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVL 151

Query: 210 -----------NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
                      ++++  + K G ++   E F +    G + ++++   ++ +  K G I 
Sbjct: 152 GSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIG 211

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
            V+S+ +++    + ++   F+ +I+   + G  +K G++   MK     P  IT+ T+I
Sbjct: 212 VVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTII 271

Query: 319 QAYNALGMTEAAQNLENKMIAMK 341
             Y   G    A  L  +M+A +
Sbjct: 272 DGYCKAGKMFKADALLKEMVAKR 294


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 156/315 (49%), Gaps = 2/315 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LF+ ML  G++P V +YT++++   + G +  AF   ++M       P+ YTY  
Sbjct: 275 EEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTE-RRLVPNAYTYGA 333

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K       E ++ +M   G++ + V +NT++DGY K    +E       +++  
Sbjct: 334 LINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEA-LRLQNIMQQK 392

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G   D FT N + S +  S   E+ ++        GV  ++ + +IL   Y +   + + 
Sbjct: 393 GFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEA 452

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R +   M+K+   P+VVTYN  IE + K G +E+  +   +M+ RG+ P++ TY SL+  
Sbjct: 453 RRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDG 512

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
              +G + +   +  ++    +  +   +  IIS   + G  ++  +L+  M +   VPD
Sbjct: 513 ERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPD 572

Query: 311 NITFATMIQAYNALG 325
           +  ++++I + + +G
Sbjct: 573 DGIYSSLIASLHKVG 587



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 157/341 (46%), Gaps = 10/341 (2%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAY---GQSGLLDEAFSTINDMK 56
           V+ G CK+ E  +A  L + ++  G KPSV  Y  L++ Y      G ++E  S +   K
Sbjct: 194 VVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLME--K 251

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           +V D   +V TY++LI+  ++  + +  EK+  EM   GIE     Y +II+   K    
Sbjct: 252 NVVDY--NVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNM 309

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +     F  M E     P+ +T  ++I+    +G ++  E   N+    GV  +    N 
Sbjct: 310 KRAFVLFDEMTERR-LVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNT 368

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   Y + GM D+   + + MQ++ F     T NI+   F ++   E+ +     M+ RG
Sbjct: 369 LMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERG 428

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + PN +++  L+  Y K     +   + + +E          +N  I  Y + G +E+  
Sbjct: 429 VAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAY 488

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +L   M+ER  +PD  T+ ++I    A G  + A  L N+M
Sbjct: 489 KLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEM 529



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 150/310 (48%), Gaps = 2/310 (0%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           +V  YT L+  Y +S  ++EA    ++M      +PDVY Y+ +I    KF        +
Sbjct: 257 NVTTYTMLIEWYSRSSKIEEAEKLFDEMLK-KGIEPDVYIYTSIINWNCKFGNMKRAFVL 315

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             EM+   +  +A TY  +I+G  KA + +  E   + M +S G   +    N+++  Y 
Sbjct: 316 FDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDM-QSKGVDVNRVIFNTLMDGYC 374

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G I++  +  N     G + D  T NI+   + R+   ++ + ++  M++R   P VV
Sbjct: 375 KKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVV 434

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           +++I+I+ + K  +  +    FK M+ +G  P+ +TY + +  Y K G + +   ++ ++
Sbjct: 435 SFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEM 494

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           +   ++ DT  +  +I     +G+V++  ELF  M +     + +T+  +I   +  G  
Sbjct: 495 QERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRA 554

Query: 328 EAAQNLENKM 337
           + A  L ++M
Sbjct: 555 DEAFKLYDEM 564



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 115/278 (41%), Gaps = 42/278 (15%)

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           +L  + L +M   GIE    ++  ++DG  K  +    ++    +V   G  P + T N+
Sbjct: 170 ELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELV-CKGFKPSVITYNT 228

Query: 142 MISA-----------------------------------YGNSGNIEKMEKWYNEFNLMG 166
           +++                                    Y  S  IE+ EK ++E    G
Sbjct: 229 LLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKG 288

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ D+     +     + G   +   + D M +R   P   TY  +I    KAG ++  E
Sbjct: 289 IEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAE 348

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLI---MKVDSILRQVENSDVILDTPFFNCII 283
                M+ +G+  N + + +L+  Y K G+I   +++ +I++Q       +D    N I 
Sbjct: 349 MMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQ---KGFEIDAFTCNIIA 405

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           S + ++   E+   L LTM+ER   P+ ++F+ +I  Y
Sbjct: 406 SGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIY 443



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 97/212 (45%), Gaps = 1/212 (0%)

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           MV+SG     + +  +++      G + + +   +E    G K  + T N L   Y    
Sbjct: 179 MVDSG-IEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIK 237

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
               +  ++  M+K      V TY ++IE + ++  IE+ E+ F +M  +G++P+   Y 
Sbjct: 238 DVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYT 297

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           S+++   K G + +   +  ++    ++ +   +  +I+   +AG+++    +   M+ +
Sbjct: 298 SIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSK 357

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               + + F T++  Y   GM + A  L+N M
Sbjct: 358 GVDVNRVIFNTLMDGYCKKGMIDEALRLQNIM 389



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 90/193 (46%)

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A   SGN+E   ++  +    G++  + +   +     + G   + +++MD +  + F P
Sbjct: 162 ALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKP 221

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           +V+TYN ++  + +   +  + E    M+   +  N  TY  L+  YS++  I + + + 
Sbjct: 222 SVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLF 281

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++    +  D   +  II+   + G++++   LF  M ER  VP+  T+  +I      
Sbjct: 282 DEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKA 341

Query: 325 GMTEAAQNLENKM 337
           G  +AA+ + N M
Sbjct: 342 GEMKAAEMMVNDM 354


>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 145/319 (45%), Gaps = 1/319 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           +  DG +P+ + YT L+S+    G L E    +  M+   +  PD   ++ L+    +  
Sbjct: 16  LRRDGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEE-DNVIPDAIFFNTLLNGYCEAG 74

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +    E ++ EM   G      +YNT+I GYG   + EE       M +     P+  T 
Sbjct: 75  KMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTF 134

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N +I A+ +  N EK     +     GV  D+ + N L + + + G      +V+  MQ 
Sbjct: 135 NMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQN 194

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
            +  P   TY IVI  +  AG I++     ++MK  G+ P    +  LV  YS++    K
Sbjct: 195 VYLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHK 254

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           VD + + +EN  V  D   F  I++A+   G +++   + L MKE    PD + ++ +++
Sbjct: 255 VDKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVK 314

Query: 320 AYNALGMTEAAQNLENKMI 338
            Y+  G  E  +   N MI
Sbjct: 315 GYSRQGRPEEGEAFLNIMI 333



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 143/303 (47%), Gaps = 3/303 (0%)

Query: 9   QPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           QPE+A  L + M  D   KP+   +  L+ A+      ++A + I+ M++     PDV +
Sbjct: 110 QPEEAMKLLQEMAKDVNSKPNDRTFNMLIKAWAHDKNPEKARNVISMMRAAG-VGPDVVS 168

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ L +   K  +    E ++ EM  + +  +  TY  +I+GY  A + +E       M 
Sbjct: 169 YNTLAQLFAKLGKPWDAENVITEMQNVYLRPNERTYGIVINGYIAAGQIDESLRLIERM- 227

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           +  G  P I   N ++  Y  S    K++K +      GVK D+QT  ++  ++   G+ 
Sbjct: 228 KMDGISPTIAVFNHLVKGYSESMKPHKVDKVFKLMENFGVKPDVQTFGLIMNAWCSTGLI 287

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D+ ++V+  M++    P V+ Y+I+++ + + G  E+ E +   M    +KPN ITY ++
Sbjct: 288 DEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQGRPEEGEAFLNIMIDENLKPNVITYTTV 347

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +S Y     +     + +++ +  V  +   F  +I  + +A    +  E+   +++   
Sbjct: 348 ISGYCSLAQMDDAMRVFQEMRSRSVFPNMQTFRTLIWGFKEARWPRRAEEILEYIRKAGF 407

Query: 308 VPD 310
            PD
Sbjct: 408 TPD 410



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 145/329 (44%), Gaps = 4/329 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK K+ E  +L+ E M   G       Y  L+  YG  G  +EA   + +M    + KP+
Sbjct: 74  GKMKEAE--ALVLE-MKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPN 130

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             T+++LIK+       +    +++ M   G+    V+YNT+   + K  K  + E+  +
Sbjct: 131 DRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVIT 190

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M ++    P+  T   +I+ Y  +G I++  +      + G+   I   N L K Y  +
Sbjct: 191 EM-QNVYLRPNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSES 249

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
               K+  V   M+     P V T+ +++  +   G I++ +    +MK   ++P+ + Y
Sbjct: 250 MKPHKVDKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAY 309

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             LV  YS+ G   + ++ L  + + ++  +   +  +IS Y     ++    +F  M+ 
Sbjct: 310 SILVKGYSRQGRPEEGEAFLNIMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRS 369

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNL 333
           R   P+  TF T+I  +        A+ +
Sbjct: 370 RSVFPNMQTFRTLIWGFKEARWPRRAEEI 398



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 117/280 (41%), Gaps = 40/280 (14%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +  K  +P  A  +   M +  L+P+   Y  +++ Y  +G +DE+   I  MK      
Sbjct: 175 LFAKLGKPWDAENVITEMQNVYLRPNERTYGIVINGYIAAGQIDESLRLIERMK------ 228

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
                              D I   +A             +N ++ GY ++ K  +++  
Sbjct: 229 ------------------MDGISPTIA------------VFNHLVKGYSESMKPHKVDKV 258

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M E+ G  PD+ T   +++A+ ++G I++ +          ++ D+   +IL K Y 
Sbjct: 259 FKLM-ENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYS 317

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G  ++  + ++ M      P V+TY  VI  +     ++     F++M+ R + PN  
Sbjct: 318 RQGRPEEGEAFLNIMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRSRSVFPNMQ 377

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           T+ +L+  + +A    + + IL  +  +     TP   CI
Sbjct: 378 TFRTLIWGFKEARWPRRAEEILEYIRKAGF---TPDLECI 414



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%)

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G   ++    K ++  G +P   TY  L+S+    G + +   +L+Q+E  +VI D  FF
Sbjct: 4   GDHRQVRSTLKNLRRDGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFF 63

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           N +++ Y +AG +++   L L MKER C     ++ T+I+ Y   G  E A  L  +M
Sbjct: 64  NTLLNGYCEAGKMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEM 121



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G + ++RS +  +++    P   TY +++ +    G + +     ++M+   + P++I +
Sbjct: 4   GDHRQVRSTLKNLRRDGHRPAKETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFF 63

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-K 303
            +L++ Y +AG + + ++++ +++     L T  +N +I  YG  G  E+  +L   M K
Sbjct: 64  NTLLNGYCEAGKMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAK 123

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           + +  P++ TF  +I+A+      E A+N+ + M A
Sbjct: 124 DVNSKPNDRTFNMLIKAWAHDKNPEKARNVISMMRA 159


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 37/330 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L + M+  G KP +     LV+    SG   EA   I+ M     C+P+  TY  +
Sbjct: 176 EALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYG-CQPNAVTYGPV 234

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    K  +  L  ++L +M    I+  AV Y+ IIDG  K                   
Sbjct: 235 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK------------------- 275

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
                             G+++     +NE  + G+  +I T NIL   +  AG +D   
Sbjct: 276 -----------------HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++  M KR   P VVT++++I++F K G + + EE  K+M HRG+ P++ITY SL+  +
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K   + K + ++  + +     +   FN +I+ Y +A  ++   ELF  M  R  V D 
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 438

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +T+ T+IQ +  LG    A+ L  +M++ K
Sbjct: 439 VTYNTLIQGFCELGKLNVAKELFQEMVSRK 468



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 144/332 (43%), Gaps = 2/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  Q   A  L   M    +K     Y+ ++    + G LD AF+  N+M+ +     ++
Sbjct: 240 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME-MKGITTNI 298

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ILI       R+D   K+L +M    I  + VT++ +ID + K  K  E E     
Sbjct: 299 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 358

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+  G   PD  T  S+I  +    +++K  +  +     G   +I+T NIL   Y +A 
Sbjct: 359 MIHRG-IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 417

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D    +   M  R      VTYN +I+ F + G +   +E F++M  R + PN +TY 
Sbjct: 418 RIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYK 477

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+      G   K   I  ++E S + LD   +N II     A  V+   +LF ++  +
Sbjct: 478 ILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 537

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              P   T+  MI      G    A+ L  KM
Sbjct: 538 GVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM 569



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 154/336 (45%), Gaps = 6/336 (1%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK    + A  LF  M   G+  ++  Y  L+  +  +G  D+    + DM   
Sbjct: 268 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK- 326

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               P+V T+S+LI S  K  +    E++  EM + GI    +TY ++IDG+ K    ++
Sbjct: 327 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  MV S GC P+I T N +I+ Y  +  I+   + + + +L GV AD  T N L 
Sbjct: 387 ANQMVDLMV-SKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           + +   G  +  + +   M  R   P +VTY I+++     G  EK  E F+K++   M+
Sbjct: 446 QGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKME 505

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            +   Y  ++     A  +     +   +    V      +N +I    + G + +   L
Sbjct: 506 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELL 565

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           F  M+E    PD  T+  +I+A+  LG  +A ++++
Sbjct: 566 FRKMEEDGHAPDGWTYNILIRAH--LGDGDATKSVK 599



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 153/338 (45%), Gaps = 16/338 (4%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + + A  LF  M+     P+V  ++ L SA  ++   D   +    M+ +     ++YT 
Sbjct: 68  KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQME-LKGIAHNLYTL 126

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           SI+I    +  +  L    + ++  LG E + +T++T+I+G     +  E       MVE
Sbjct: 127 SIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVE 186

Query: 129 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            G   PD+ T+N++++    SG        I+KM ++  + N +        LN++ KS 
Sbjct: 187 MGH-KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP---VLNVMCKSG 242

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
             A   + +R     M++R      V Y+I+I+   K G ++     F +M+ +G+  N 
Sbjct: 243 QTALAMELLRK----MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNI 298

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           ITY  L+  +  AG       +LR +    +  +   F+ +I ++ + G + +  EL   
Sbjct: 299 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 358

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M  R   PD IT+ ++I  +      + A  + + M++
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 139/304 (45%), Gaps = 10/304 (3%)

Query: 41  QSGLLD----EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 96
           +SGL+D    +A     DM   S   P V  +S L  +  K  ++DL+  +  +M   GI
Sbjct: 61  RSGLVDIKADDAIDLFRDMIH-SRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGI 119

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEK 154
             +  T + +I+ + + +K   +  +FSAM  +   G  P+  T +++I+     G + +
Sbjct: 120 AHNLYTLSIMINCFCRCRK---LCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSE 176

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             +  +    MG K D+ T+N L      +G   +   ++D M +    P  VTY  V+ 
Sbjct: 177 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLN 236

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
              K+G      E  +KM+ R +K +++ Y  ++    K G +    ++  ++E   +  
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITT 296

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           +   +N +I  +  AG  +   +L   M +R   P+ +TF+ +I ++   G    A+ L 
Sbjct: 297 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 356

Query: 335 NKMI 338
            +MI
Sbjct: 357 KEMI 360


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 162/335 (48%), Gaps = 5/335 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++LG C+  + + AS  F+ M   G +P+V VY  L+     SG L++A +   +MKS S
Sbjct: 156 LILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHS 215

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C PDV TY+ L+ +  K  R +   K+   M   G   + +T++T+I G  +  + E+ 
Sbjct: 216 -CSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKA 274

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F +M+E+G C P+ +T  ++IS    +  + +  + + +     +  D    N L  
Sbjct: 275 LEVFGSMLEAG-CKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIA 333

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            Y + G  D+   +   M       PT+VT+N +I+ F K G + +  E   +M  +G+ 
Sbjct: 334 GYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLA 393

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            +S TY  L++  S+A  + +   + +Q+     +LD       +    + G++++   +
Sbjct: 394 ADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAV 453

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           F   ++   VP+  TF  + ++   LG  E AQ L
Sbjct: 454 FEATRKSGAVPNPETFRILSESLIKLGRVEDAQKL 488



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 151/329 (45%), Gaps = 2/329 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +PE++  + E M++ G  P V  +  ++  + +S  +++A      M   S  KPD  +Y
Sbjct: 25  KPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVE-SGYKPDNVSY 83

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
            ILI    K  + D   KIL+EM   G   S   Y++++    KA++ +   S F  M+ 
Sbjct: 84  HILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIR 143

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            GG HPD      +I     +G ++   + + +    G + ++   N+L      +G  +
Sbjct: 144 -GGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLE 202

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +  ++   M+     P VVTYN +++   KA  +E+  + F+ M+  G  PN IT+ +L+
Sbjct: 203 QANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLI 262

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               + G + K   +   +  +    +   +  +IS   +A  V +  ELF  M +    
Sbjct: 263 HGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIP 322

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKM 337
           PD + + ++I  Y   G  + A+ L  +M
Sbjct: 323 PDAVAYNSLIAGYCKRGSMDEAEKLYREM 351



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 118/267 (44%), Gaps = 1/267 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K ++ E+   LFE M + G  P+V  ++ L+    ++G L++A      M   + CKP+ 
Sbjct: 232 KARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE-AGCKPNK 290

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YTY+ LI    +  +     ++  +M+   I   AV YN++I GY K    +E E  +  
Sbjct: 291 YTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYRE 350

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M    G  P I T N++I  +   G + +  +   E    G+ AD  T  IL     RA 
Sbjct: 351 MSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRAT 410

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D+   V   M+++ F    V+    +    K G+I++    F+  +  G  PN  T+ 
Sbjct: 411 KLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFR 470

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDV 272
            L  +  K G +     ++   +  D+
Sbjct: 471 ILSESLIKLGRVEDAQKLMEPAKARDI 497



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V+TYS +IKS  K  + +   K+L EM   G       +N ++ G+ ++   E+    +
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MVESG   PD  + + +I      G +++  K  +E  + G    +Q  + L ++  +
Sbjct: 69  QHMVESG-YKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAK 127

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A   D   S+ D M +    P  + +  +I    +AG ++   E FK+M   G +PN   
Sbjct: 128 ARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPV 187

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+     +G + + +++  ++++     D   +N ++ A  +A  VE+  +LF  M+
Sbjct: 188 YNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMR 247

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
               VP+ ITF+T+I      G  E A  +   M+
Sbjct: 248 AAGYVPNVITFSTLIHGLCRTGELEKALEVFGSML 282



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 1/225 (0%)

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
           I  +  TY++II    K  K EE       M+ + GC+PD+F  N ++  +  S N+EK 
Sbjct: 6   IAANVFTYSSIIKSLVKEAKPEESYKVLEEMM-AAGCNPDVFAFNGVMQGFARSNNMEKA 64

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            + Y      G K D  + +IL     + G  D+   ++  M  R   P++  Y+ ++  
Sbjct: 65  REVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRA 124

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             KA  ++     F +M   G  P+ + +  L+    +AG +       +Q+       +
Sbjct: 125 LAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPN 184

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            P +N ++     +G +E+   LF  MK   C PD +T+ T++ A
Sbjct: 185 VPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDA 229



 Score = 38.1 bits (87), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 21/107 (19%), Positives = 52/107 (48%)

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M+ + +  N  TY S++ +  K     +   +L ++  +    D   FN ++  + ++ +
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +EK  E++  M E    PDN+++  +I     +G  + +  + ++M+
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMV 107


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 149/323 (46%), Gaps = 1/323 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA+ + E M + G +P +  Y  L     Q+G +DEAF   ++M+ +    PDV TY+ 
Sbjct: 295 KQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNT 354

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +C K+       ++L EM   G++ + VT+N ++    K  K EE       + E G
Sbjct: 355 LVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG 414

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+ T N++I AY  +GN+ K     +E    G+K D  TLN +  +  +   Y+  
Sbjct: 415 -LAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDA 473

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++    +R F P  V+Y  V+  + K  + E     + +M  R + P+  TY +L+  
Sbjct: 474 EELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKG 533

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +   + +    L +     ++ D   +N II AY + GD+E        M E    PD
Sbjct: 534 LCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPD 593

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
            +T  T++      G  + A  L
Sbjct: 594 VVTCNTLMNGLCLHGKLDKALKL 616



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 131/296 (44%), Gaps = 1/296 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P    Y  L++A+ + G+L EA + +  MK      P   TY+ L+ +  +      
Sbjct: 238 GLSPDAVTYNTLLNAHCRKGMLGEARALLARMKR-DGIAPTQPTYNTLVSAFARLGWIKQ 296

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             K++  M+  G E    TYN +  G  +A K +E       M   G   PD+ T N+++
Sbjct: 297 ATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLV 356

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A           +   E    GVK  + T NI+ KS  + G  ++    ++ + +    
Sbjct: 357 DACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLA 416

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P V+TYN +I+ + KAG++ K      +M  +G+K ++ T  +++    K       + +
Sbjct: 417 PDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEEL 476

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           L        + D   +  +++AY +  + E    L+  M ER  +P   T+ T+I+
Sbjct: 477 LHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIK 532



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 137/295 (46%), Gaps = 37/295 (12%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A    E +  +GL P V  Y  L+ AY ++G + +AF+ +++M      K D +T + 
Sbjct: 401 EEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVG-KGLKMDTFTLNT 459

Query: 71  LIKSCTKFHRFDLIEKILA----------EMSYLGIEC---------------------- 98
           ++ +  K  R++  E++L           E+SY  +                        
Sbjct: 460 VLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERK 519

Query: 99  ---SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
              S  TYNT+I G  + ++ +E     +  VE G   PD  T N +I AY   G++E  
Sbjct: 520 LIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLV-PDETTYNIIIHAYCKEGDLENA 578

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            +++N+      K D+ T N L       G  DK   + +   ++     V+TYN +I++
Sbjct: 579 FRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQS 638

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             K G ++    +F  M+ +G++P++ TY  ++SA S+AG   +  ++L ++ +S
Sbjct: 639 MCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADS 693



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 99/249 (39%), Gaps = 3/249 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K+ E A  L       G  P    Y  +++AY +    + A    + M       P
Sbjct: 464 LCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIE-RKLIP 522

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            + TY+ LIK   +  R       L E    G+     TYN II  Y K    E      
Sbjct: 523 SISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFH 582

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + MVE+    PD+ T N++++     G ++K  K +  +   G K D+ T N L +S  +
Sbjct: 583 NKMVENS-FKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCK 641

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D      D M+ +   P   TYN+V+    +AG  E+      K+   G    S  
Sbjct: 642 VGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFA 701

Query: 244 YCSLVSAYS 252
            C L+   S
Sbjct: 702 -CPLLKPSS 709



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 132/317 (41%), Gaps = 8/317 (2%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT----YSILIKSCTKFHRFD 82
           P+  +  A +SAY +  L   A   ++ ++     +P +       S L +S +   +  
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
           L   +   +  L +  +  T+N ++  +       +  ++ S M +  G  PD  T N++
Sbjct: 193 L--DVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTM-QGFGLSPDAVTYNTL 249

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           ++A+   G + +           G+     T N L  ++ R G   +   V++ M    F
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGF 309

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-PNSITYCSLVSAYSKAGLIMKVD 261
            P + TYN++     +AG +++      +M+  G   P+ +TY +LV A  K        
Sbjct: 310 EPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDAL 369

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +L ++ +  V       N ++ +  + G +E+       + E    PD IT+ T+I AY
Sbjct: 370 RLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAY 429

Query: 322 NALGMTEAAQNLENKMI 338
              G    A  L ++M+
Sbjct: 430 CKAGNVAKAFTLMDEMV 446


>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 151/321 (47%), Gaps = 3/321 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L + +Q E +  + E M++ G++P    Y+ L+S   +    D A +  + M   + C 
Sbjct: 52  VLRRGQQWELSQQIAEDMINAGIRPDNITYSTLISCANRCNYQDAAMAWFDRMHD-AQCV 110

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TYS +I    K  ++D    +   +   G +   VTY T++  +G+A       S 
Sbjct: 111 PDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSI 170

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  G  P     N MIS  G +G +    K + E    GVK +  TL+ + + Y 
Sbjct: 171 FDEM-KGSGIQPGSVVYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYS 229

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R+G   +   +   M++      +V YN VI+   +AG + + E+Y ++M   G +PN  
Sbjct: 230 RSGKVMEGLGIFHHMRQDLACDIIV-YNAVIKMCREAGLVPEAEQYLREMVEYGHQPNDW 288

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +++S Y+K G+ ++   +  Q+  +    D   +  ++  YG A D EK+ E+   M
Sbjct: 289 TYRNMISLYAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQEILHEM 348

Query: 303 KERHCVPDNITFATMIQAYNA 323
              +C PD   +  ++   +A
Sbjct: 349 VSANCAPDERLWCVILNLLDA 369



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 141/291 (48%), Gaps = 2/291 (0%)

Query: 48  AFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 107
           A S    +++  +   ++YTY++++K   +  +++L ++I  +M   GI    +TY+T+I
Sbjct: 26  ALSLFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQQIAEDMINAGIRPDNITYSTLI 85

Query: 108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 167
               +    +   + F  M     C PD  T ++MI  YG  G  ++    Y      G 
Sbjct: 86  SCANRCNYQDAAMAWFDRM-HDAQCVPDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGW 144

Query: 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           K D  T   + + +GRAG      S+ D M+     P  V YNI+I   G+AG +    +
Sbjct: 145 KPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMISCLGRAGRMGHALK 204

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
            F++MK  G+KPN++T  +++  YS++G +M+   I   +   D+  D   +N +I    
Sbjct: 205 VFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIFHHMRQ-DLACDIIVYNAVIKMCR 263

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +AG V +  +    M E    P++ T+  MI  Y   GM   AQ + ++++
Sbjct: 264 EAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQLV 314


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 156/315 (49%), Gaps = 2/315 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LF+ ML  G++P V +YT++++   + G +  AF   ++M       P+ YTY  
Sbjct: 279 EEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTE-RRLVPNAYTYGA 337

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K       E ++ +M   G++ + V +NT++DGY K    +E       +++  
Sbjct: 338 LINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEA-LRLQNIMQQK 396

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G   D FT N + S +  S   E+ ++        GV  ++ + +IL   Y +   + + 
Sbjct: 397 GFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEA 456

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R +   M+K+   P+VVTYN  IE + K G +E+  +   +M+ RG+ P++ TY SL+  
Sbjct: 457 RRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDG 516

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
              +G + +   +  ++    +  +   +  IIS   + G  ++  +L+  M +   VPD
Sbjct: 517 ERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPD 576

Query: 311 NITFATMIQAYNALG 325
           +  ++++I + + +G
Sbjct: 577 DGIYSSLIASLHKVG 591



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 157/341 (46%), Gaps = 10/341 (2%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAY---GQSGLLDEAFSTINDMK 56
           V+ G CK+ E  +A  L + ++  G KPSV  Y  L++ Y      G ++E  S +   K
Sbjct: 198 VVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLME--K 255

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           +V D   +V TY++LI+  ++  + +  EK+  EM   GIE     Y +II+   K    
Sbjct: 256 NVVDY--NVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNM 313

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +     F  M E     P+ +T  ++I+    +G ++  E   N+    GV  +    N 
Sbjct: 314 KRAFVLFDEMTERR-LVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNT 372

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   Y + GM D+   + + MQ++ F     T NI+   F ++   E+ +     M+ RG
Sbjct: 373 LMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERG 432

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + PN +++  L+  Y K     +   + + +E          +N  I  Y + G +E+  
Sbjct: 433 VAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAY 492

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +L   M+ER  +PD  T+ ++I    A G  + A  L N+M
Sbjct: 493 KLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEM 533



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 150/310 (48%), Gaps = 2/310 (0%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           +V  YT L+  Y +S  ++EA    ++M      +PDVY Y+ +I    KF        +
Sbjct: 261 NVTTYTMLIEWYSRSSKIEEAEKLFDEMLK-KGIEPDVYIYTSIINWNCKFGNMKRAFVL 319

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             EM+   +  +A TY  +I+G  KA + +  E   + M +S G   +    N+++  Y 
Sbjct: 320 FDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDM-QSKGVDVNRVIFNTLMDGYC 378

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G I++  +  N     G + D  T NI+   + R+   ++ + ++  M++R   P VV
Sbjct: 379 KKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVV 438

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           +++I+I+ + K  +  +    FK M+ +G  P+ +TY + +  Y K G + +   ++ ++
Sbjct: 439 SFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEM 498

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           +   ++ DT  +  +I     +G+V++  ELF  M +     + +T+  +I   +  G  
Sbjct: 499 QERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRA 558

Query: 328 EAAQNLENKM 337
           + A  L ++M
Sbjct: 559 DEAFKLYDEM 568



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 115/278 (41%), Gaps = 42/278 (15%)

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           +L  + L +M   GIE    ++  ++DG  K  +    ++    +V   G  P + T N+
Sbjct: 174 ELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELV-CKGFKPSVITYNT 232

Query: 142 MISA-----------------------------------YGNSGNIEKMEKWYNEFNLMG 166
           +++                                    Y  S  IE+ EK ++E    G
Sbjct: 233 LLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKG 292

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ D+     +     + G   +   + D M +R   P   TY  +I    KAG ++  E
Sbjct: 293 IEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAE 352

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLI---MKVDSILRQVENSDVILDTPFFNCII 283
                M+ +G+  N + + +L+  Y K G+I   +++ +I++Q       +D    N I 
Sbjct: 353 MMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQ---KGFEIDAFTCNIIA 409

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           S + ++   E+   L LTM+ER   P+ ++F+ +I  Y
Sbjct: 410 SGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIY 447



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/212 (20%), Positives = 97/212 (45%), Gaps = 1/212 (0%)

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           MV+SG     + +  +++      G + + +   +E    G K  + T N L   Y    
Sbjct: 183 MVDSG-IEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIK 241

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
               +  ++  M+K      V TY ++IE + ++  IE+ E+ F +M  +G++P+   Y 
Sbjct: 242 DVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYT 301

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           S+++   K G + +   +  ++    ++ +   +  +I+   +AG+++    +   M+ +
Sbjct: 302 SIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSK 361

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               + + F T++  Y   GM + A  L+N M
Sbjct: 362 GVDVNRVIFNTLMDGYCKKGMIDEALRLQNIM 393



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 90/193 (46%)

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A   SGN+E   ++  +    G++  + +   +     + G   + +++MD +  + F P
Sbjct: 166 ALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKP 225

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           +V+TYN ++  + +   +  + E    M+   +  N  TY  L+  YS++  I + + + 
Sbjct: 226 SVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLF 285

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++    +  D   +  II+   + G++++   LF  M ER  VP+  T+  +I      
Sbjct: 286 DEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKA 345

Query: 325 GMTEAAQNLENKM 337
           G  +AA+ + N M
Sbjct: 346 GEMKAAEMMVNDM 358


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 161/341 (47%), Gaps = 5/341 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA  L + M S G KP V  Y  LV+   + G LDEA   +N M S    +P+V T++I+
Sbjct: 34  QAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGS-QPNVITHNII 92

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           ++S     R+   EK+L EM   G   S VT+N +I+   +             M  + G
Sbjct: 93  LRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKM-PTHG 151

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  + N ++  +     +++  ++       G   DI T N +  +  + G  D   
Sbjct: 152 CTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAV 211

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +++ +  +   P ++TYN VI+   K G  ++  E   +M+ +G+KP+ ITY SL++  
Sbjct: 212 ELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGL 271

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           S+ G + +       VE   V  +   +N I+    +A   ++  +    M  + C P  
Sbjct: 272 SREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTE 331

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA---MKENSGKKLI 349
           +++  +I+     G+ + A  L N++ +   +K++S ++++
Sbjct: 332 VSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVV 372



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 38/285 (13%)

Query: 54  DMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113
           D +   +C PDV TY+ILI            E   AE                  G G+A
Sbjct: 5   DRQLEKECYPDVITYTILI------------EATCAE-----------------SGVGQA 35

Query: 114 KKF-EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
            K  +EM S         GC PD+ T N +++     G +++  K+ N     G + ++ 
Sbjct: 36  MKLLDEMGSR--------GCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVI 87

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T NI+ +S    G +     ++  M ++   P+VVT+NI+I    + G + +  +  +KM
Sbjct: 88  THNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKM 147

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
              G  PNS++Y  L+  + K   + +    L  + +     D   +N +++A  + G V
Sbjct: 148 PTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKV 207

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +   EL   +  + C P  IT+ T+I   + +G T+ A  L ++M
Sbjct: 208 DAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEM 252



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 4/119 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + +QA  L   M   GLKP V  Y++L++   + G ++EA    +D++     KP
Sbjct: 236 LSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFG-VKP 294

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEM 119
           + +TY+ ++    K  + D     LA M   G + + V+Y  +I+G    G AK+  E+
Sbjct: 295 NAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALEL 353



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 62/145 (42%)

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V+D   ++  +P V+TY I+IE       + +  +   +M  RG KP+ +TY  LV+   
Sbjct: 3   VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           K G + +    L  + +     +    N I+ +    G      +L   M  + C P  +
Sbjct: 63  KEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVV 122

Query: 313 TFATMIQAYNALGMTEAAQNLENKM 337
           TF  +I      G+   A ++  KM
Sbjct: 123 TFNILINFLCRKGLLGRAIDILEKM 147


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 156/335 (46%), Gaps = 5/335 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK K+  +  +  +   S    P V  Y+ ++  Y   G L +A   ++DM+ +   KP
Sbjct: 271 LGKVKEAHRLLMQMDFRSS---TPDVVSYSTVIDGYCHLGELKKALKLMDDMQ-IKGLKP 326

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           + YTY+ +I    K  +    EK+L EM    I    V Y T+I G+ K          F
Sbjct: 327 NRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWF 386

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ S    PD  T  ++I  +G  G + + +  ++E    G+K D  T   L   Y +
Sbjct: 387 DEML-SKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCK 445

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG      S+ + M +    P +VTY  +I+   K G ++   E   +M+ +G++ N   
Sbjct: 446 AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCI 505

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S+V+   KAG I +   +++++E + +  D   +  +I AY + GD++K  +L   M 
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +R   P  +TF  ++  +  LGM E    L   M+
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWML 600



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 154/334 (46%), Gaps = 5/334 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  +P+    LF  M+S GLKP    YT L+  Y ++G +  AFS  N+M  +    P+
Sbjct: 412 GKVIEPQN---LFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMG-MTPN 467

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY  LI    K    D   ++L EM   G++ +   YN++++G  KA   E+      
Sbjct: 468 IVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMK 527

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E  G  PD  T  ++I AY   G+I+K  K   E    G++  + T N+L   +   
Sbjct: 528 EM-EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCML 586

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           GM +    ++ +M ++   P  +TYN +++       +    + +K+M+++G+ P+S TY
Sbjct: 587 GMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTY 646

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L+  + KA  + +   + +++     +     +N +I  + +     +  ELF  M+ 
Sbjct: 647 NILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRG 706

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              V D   +   +      G  E   NL ++ I
Sbjct: 707 HGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAI 740



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 168/355 (47%), Gaps = 8/355 (2%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C   E  +A  L + M   GLKP+   Y +++    + G   EA   + +M S  
Sbjct: 299 VIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMS-Q 357

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD   Y+ LI    K        K   EM    I    +TY T+I G+G+  K  E 
Sbjct: 358 KIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEP 417

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           ++ F  M+ S G  PD  T  ++I  Y  +G +      +NE   MG+  +I T   L  
Sbjct: 418 QNLFHEMI-SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALID 476

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G  D    ++D M+K+     V  YN ++    KAG+IE+  +  K+M+  G+ P
Sbjct: 477 GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDP 536

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           ++ITY +++ AY + G I K   +L+++ +  +      FN +++ +   G +E    L 
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLL 596

Query: 300 LTMKERHCVPDNITFATMIQAY---NALG-MTEAAQNLENKMIAMKENSGKKLIQ 350
             M E+  VPD IT+ T+++ +   N++   T+  + + N+ +A   N+   LI+
Sbjct: 597 GWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIK 651



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 2/309 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A+  F+ MLS  + P    YT L+  +GQ G + E  +  ++M S    KPD  TY+ LI
Sbjct: 382 ANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMIS-RGLKPDEVTYTTLI 440

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K         +  EM  +G+  + VTY  +IDG  K  + +        M    G 
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEM-RKKGL 499

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             ++   NSM++    +GNIE+  K   E  + G+  D  T   +  +Y R G  DK   
Sbjct: 500 QLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHK 559

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  M  R   PTVVT+N+++  F   G +E  +     M  +G+ P++ITY +L+  + 
Sbjct: 560 LLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHC 619

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
               +     I +++ N  V  D+  +N +I  + +A ++++   L+  M E+  VP   
Sbjct: 620 IRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVT 679

Query: 313 TFATMIQAY 321
           ++  +I+ +
Sbjct: 680 SYNALIKRF 688



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 25/259 (9%)

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
           FD+  ++L E+ +L                 +A+K  +   S+  +V    C       N
Sbjct: 193 FDIFFQVLVEIGHLS----------------EARKLLDKLLSYGLVVTVDSC-------N 229

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           + +S   N  N E +E     F   G+  +  + NI+  S  R G   +   ++  M  R
Sbjct: 230 AFLSRIAN--NSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFR 287

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P VV+Y+ VI+ +   G ++K  +    M+ +G+KPN  TY S++    K G   + 
Sbjct: 288 SSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEA 347

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           + +LR++ +  +I D   +  +I  + + G V    + F  M  +   PD IT+ T+IQ 
Sbjct: 348 EKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQG 407

Query: 321 YNALGMTEAAQNLENKMIA 339
           +   G     QNL ++MI+
Sbjct: 408 FGQGGKVIEPQNLFHEMIS 426



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 99/246 (40%), Gaps = 36/246 (14%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           GI  +  +YN II    +  K +E       M +     PD+ + +++I  Y + G ++K
Sbjct: 253 GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQM-DFRSSTPDVVSYSTVIDGYCHLGELKK 311

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             K  ++  + G+K +  T N +     + G   +   V+  M  +   P  V Y  +I 
Sbjct: 312 ALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIH 371

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            F K GH+    ++F +M  + + P+ ITY +L                           
Sbjct: 372 GFFKLGHVRTANKWFDEMLSKKISPDYITYTTL--------------------------- 404

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
                   I  +GQ G V +   LF  M  R   PD +T+ T+I  Y   G    A +L 
Sbjct: 405 --------IQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLH 456

Query: 335 NKMIAM 340
           N+M+ M
Sbjct: 457 NEMVQM 462


>gi|255661200|gb|ACU25769.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 426

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 153/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K   F 
Sbjct: 4   ALSPDKYTYSTLITYFGKEGLFDDALSWLQKMEQ--DRVPGDLVLYSNLIELSRKLCDFS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   GI    V YN++I+ +GKAK F E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  ++ T N MI  YG     ++ +K +      G++
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M +RG++P++ITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMHNRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/356 (21%), Positives = 159/356 (44%), Gaps = 39/356 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P +  Y ++++ +G++ L  EA S I++M+ ++   PD  +YS L+   
Sbjct: 66  IFSRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMR-MAGIMPDTVSYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +    + +T N +ID YG+    +E +  F  M    G  P+
Sbjct: 125 VENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGM-RKXGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  M  R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMHNRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIDAGEVKDITVFER 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I+ + +      + E+F  M+     PD+   A ++ AY  L   E A +   +M
Sbjct: 361 MINLFSKYKKYSNVVEVFEKMRGLGYFPDSNVIALVLNAYGKLREFEKANDAYTEM 416



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTYS LI    K   FD     L +M    +    V Y+ +I+   K   F +  S 
Sbjct: 7   PDKYTYSTLITYFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSKAISI 66

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           FS +  SG   PD+   NSMI+ +G +    +     +E  + G+  D  + + L   Y 
Sbjct: 67  FSRLKRSG-ITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLTMYV 125

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
               + +  SV   M++      ++T N++I+ +G+    ++ ++ F  M+  G++PN +
Sbjct: 126 ENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKLFWGMRKXGIEPNVV 185

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L   M
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNLIQEM 245

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             R   PD IT++T+I  +  +G  + A  L  K+
Sbjct: 246 HNRGIEPDAITYSTIISIWGKVGKLDRAAMLFQKL 280



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 35/169 (20%)

Query: 200 RFFFPTVVTYNIVIETFGKAG-------HIEKMEE------------------------- 227
           R   P   TY+ +I  FGK G        ++KME+                         
Sbjct: 3   RALSPDKYTYSTLITYFGKEGLFDDALSWLQKMEQDRVPGDLVLYSNLIELSRKLCDFSK 62

Query: 228 ---YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
               F ++K  G+ P+ + Y S+++ + KA L  +  S++ ++  + ++ DT  ++ +++
Sbjct: 63  AISIFSRLKRSGITPDLVAYNSMINVFGKAKLFREARSLISEMRMAGIMPDTVSYSTLLT 122

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            Y +     +   +F  M+E  C+ + IT   MI  Y  L M + A  L
Sbjct: 123 MYVENQKFLEALSVFAEMREIKCLLNLITCNVMIDVYGQLDMAKEADKL 171


>gi|168012346|ref|XP_001758863.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690000|gb|EDQ76369.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 367

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 160/323 (49%), Gaps = 9/323 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+     QA  LF+ MLS G++  +  + +++ AY + GL  +A+    DM   S  +
Sbjct: 19  VLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLFKKAWRMYEDMVE-SGIQ 77

Query: 63  PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNT---IIDGYGKAKKFEE 118
            D  T S L+    K     +  EKI +++   GI     TYNT   ++   G  ++ +E
Sbjct: 78  ADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSVLSRGGHTERCKE 137

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           +E     +       P+I T N+++  +   G +++  + Y      G+K  + T   L 
Sbjct: 138 LEIEMQRLE----VVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGLV 193

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           + Y RA  + +   V   M++    P ++ Y+++I  +GKAG  E+    F+++++ G  
Sbjct: 194 QMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALVFRQLQNDGYI 253

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN +T+C L+ A+   G + ++ +   ++  S  + D   +N ++ AYG+ G   +   L
Sbjct: 254 PNVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYGHSVQAAIL 313

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
           F  M+ +   P+ +++ TMIQAY
Sbjct: 314 FRRMQAQGISPNAVSYDTMIQAY 336



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 156/316 (49%), Gaps = 3/316 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           LKP+   YT ++   G++GL  +A    ++M S S  +  +++++ +I +  +   F   
Sbjct: 6   LKPNGHTYTLVLGVLGRAGLTIQARELFDEMLS-SGVEVGLHSFNSMIGAYARKGLFKKA 64

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            ++  +M   GI+   +T +T++ G GK +   E  E  FS + E+G   P + T N+++
Sbjct: 65  WRMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENG-ILPRVETYNTLL 123

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           S     G+ E+ ++   E   + V  +I T N L   + + G   +   V   +      
Sbjct: 124 SVLSRGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLK 183

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PTVVTY  +++ + +A   ++  E F +M+  G KP+ + Y  ++S Y KAG   +   +
Sbjct: 184 PTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEAALV 243

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
            RQ++N   I +   + C+I A+G  G ++++G  F  M    C+PD   +  M+ AY  
Sbjct: 244 FRQLQNDGYIPNVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGR 303

Query: 324 LGMTEAAQNLENKMIA 339
            G +  A  L  +M A
Sbjct: 304 YGHSVQAAILFRRMQA 319



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 132/273 (48%), Gaps = 13/273 (4%)

Query: 4   LGKCKQP-EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +GK + P E A  +F  +  +G+ P V+ Y  L+S   + G  +       +M+ + +  
Sbjct: 90  VGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSVLSRGGHTERCKELEIEMQRL-EVV 148

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++ T++ L+    +  R     ++   +   G++ + VTY  ++  Y +A K +E    
Sbjct: 149 PNIITFNTLLMMHVQGGRLKEAAEVYQRILDAGLKPTVVTYTGLVQMYCRASKHKEAIEV 208

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M   G C PD+   + MIS YG +G+ E+    + +    G   ++ T   L +++G
Sbjct: 209 FLEMRRVG-CKPDLMIYSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTWCCLIQAFG 267

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G   ++ +  + M      P +  YN+++  +G+ GH  +    F++M+ +G+ PN++
Sbjct: 268 WQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYGHSVQAAILFRRMQAQGISPNAV 327

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           +Y +++ AY  +          +Q  ++ ++LD
Sbjct: 328 SYDTMIQAYCHS----------KQAADAQIVLD 350



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 37/230 (16%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ +++ +L  GLKP+V  YT LV  Y ++    EA     +M+ V  CKPD+  YS+
Sbjct: 168 KEAAEVYQRILDAGLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVG-CKPDLMIYSL 226

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +                                   I  YGKA   EE    F  + ++ 
Sbjct: 227 M-----------------------------------ISVYGKAGSAEEAALVFRQL-QND 250

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P++ T   +I A+G  G ++++  ++NE    G   D+   N++  +YGR G   + 
Sbjct: 251 GYIPNVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGAYGRYGHSVQA 310

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             +   MQ +   P  V+Y+ +I+ +  +      +    +M   G  P+
Sbjct: 311 AILFRRMQAQGISPNAVSYDTMIQAYCHSKQAADAQIVLDQMTRAGFSPD 360



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 36/240 (15%)

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           V+ G   P+  T   ++   G +G   +  + ++E    GV+  + + N +  +Y R G+
Sbjct: 1   VQKGRLKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGL 60

Query: 187 YDKMRSVMDFM-----------------------------QKRF-------FFPTVVTYN 210
           + K   + + M                             +K F         P V TYN
Sbjct: 61  FKKAWRMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYN 120

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            ++    + GH E+ +E   +M+   + PN IT+ +L+  + + G + +   + +++ ++
Sbjct: 121 TLLSVLSRGGHTERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRILDA 180

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +      +  ++  Y +A   ++  E+FL M+   C PD + ++ MI  Y   G  E A
Sbjct: 181 GLKPTVVTYTGLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAGSAEEA 240



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 1/142 (0%)

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           +QK    P   TY +V+   G+AG   +  E F +M   G++    ++ S++ AY++ GL
Sbjct: 1   VQKGRLKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGL 60

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DVEKMGELFLTMKERHCVPDNITFA 315
             K   +   +  S +  D    + ++S  G+    VE   ++F  +KE   +P   T+ 
Sbjct: 61  FKKAWRMYEDMVESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYN 120

Query: 316 TMIQAYNALGMTEAAQNLENKM 337
           T++   +  G TE  + LE +M
Sbjct: 121 TLLSVLSRGGHTERCKELEIEM 142


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 156/335 (46%), Gaps = 5/335 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK K+  +  +  +   S    P V  Y+ ++  Y   G L +A   ++DM+ +   KP
Sbjct: 271 LGKVKEAHRLLMQMDFRSS---TPDVVSYSTVIDGYCHLGELKKALKLMDDMQ-IKGLKP 326

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           + YTY+ +I    K  +    EK+L EM    I    V Y T+I G+ K          F
Sbjct: 327 NRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWF 386

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ S    PD  T  ++I  +G  G + + +  ++E    G+K D  T   L   Y +
Sbjct: 387 DEML-SKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCK 445

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG      S+ + M +    P +VTY  +I+   K G ++   E   +M+ +G++ N   
Sbjct: 446 AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCI 505

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S+V+   KAG I +   +++++E + +  D   +  +I AY + GD++K  +L   M 
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +R   P  +TF  ++  +  LGM E    L   M+
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWML 600



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 155/334 (46%), Gaps = 5/334 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  +P+    LF  M+S GLKP    YT L+  Y ++G +  AFS  N+M  +    P+
Sbjct: 412 GKVIEPQN---LFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMG-MTPN 467

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY  LI    K    D   ++L EM   G++ +   YN++++G  KA   E+      
Sbjct: 468 IVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMK 527

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E  G  PD  T  ++I AY   G+I+K  K   E    G++  + T N+L   +   
Sbjct: 528 EM-EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCML 586

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           GM +    ++ +M ++   P  +TYN +++       +    + +K+M+++G+ P+S TY
Sbjct: 587 GMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTY 646

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L+  + KA  + +   + +++     +     +N +I  + +   + +  ELF  M+ 
Sbjct: 647 NILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRG 706

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              V D   +   +      G  E   NL ++ I
Sbjct: 707 HGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAI 740



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 168/355 (47%), Gaps = 8/355 (2%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C   E  +A  L + M   GLKP+   Y +++    + G   EA   + +M S  
Sbjct: 299 VIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMS-Q 357

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD   Y+ LI    K        K   EM    I    +TY T+I G+G+  K  E 
Sbjct: 358 KIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEP 417

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           ++ F  M+ S G  PD  T  ++I  Y  +G +      +NE   MG+  +I T   L  
Sbjct: 418 QNLFHEMI-SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALID 476

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G  D    ++D M+K+     V  YN ++    KAG+IE+  +  K+M+  G+ P
Sbjct: 477 GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDP 536

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           ++ITY +++ AY + G I K   +L+++ +  +      FN +++ +   G +E    L 
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLL 596

Query: 300 LTMKERHCVPDNITFATMIQAY---NALG-MTEAAQNLENKMIAMKENSGKKLIQ 350
             M E+  VPD IT+ T+++ +   N++   T+  + + N+ +A   N+   LI+
Sbjct: 597 GWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIK 651



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 2/309 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A+  F+ MLS  + P    YT L+  +GQ G + E  +  ++M S    KPD  TY+ LI
Sbjct: 382 ANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMIS-RGLKPDEVTYTTLI 440

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K         +  EM  +G+  + VTY  +IDG  K  + +        M    G 
Sbjct: 441 DVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEM-RKKGL 499

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             ++   NSM++    +GNIE+  K   E  + G+  D  T   +  +Y R G  DK   
Sbjct: 500 QLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHK 559

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  M  R   PTVVT+N+++  F   G +E  +     M  +G+ P++ITY +L+  + 
Sbjct: 560 LLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHC 619

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
               +     I +++ N  V  D+  +N +I  + +A ++++   L+  M E+  VP   
Sbjct: 620 IRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVT 679

Query: 313 TFATMIQAY 321
           ++  +I+ +
Sbjct: 680 SYNALIKRF 688



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 116/259 (44%), Gaps = 25/259 (9%)

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
           FD+  ++L E+ +L                 +A+K  +   S+  +V    C       N
Sbjct: 193 FDIFFQVLVEIGHLS----------------EARKLLDKLLSYGLVVTVDSC-------N 229

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           + +S   N  N E +E     F   G+  +  + NI+  S  R G   +   ++  M  R
Sbjct: 230 AFLSRIAN--NSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFR 287

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P VV+Y+ VI+ +   G ++K  +    M+ +G+KPN  TY S++    K G   + 
Sbjct: 288 SSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEA 347

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           + +LR++ +  +I D   +  +I  + + G V    + F  M  +   PD IT+ T+IQ 
Sbjct: 348 EKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQG 407

Query: 321 YNALGMTEAAQNLENKMIA 339
           +   G     QNL ++MI+
Sbjct: 408 FGQGGKVIEPQNLFHEMIS 426



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 99/246 (40%), Gaps = 36/246 (14%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           GI  +  +YN II    +  K +E       M +     PD+ + +++I  Y + G ++K
Sbjct: 253 GISWNTTSYNIIIYSLCRLGKVKEAHRLLMQM-DFRSSTPDVVSYSTVIDGYCHLGELKK 311

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             K  ++  + G+K +  T N +     + G   +   V+  M  +   P  V Y  +I 
Sbjct: 312 ALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIH 371

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            F K GH+    ++F +M  + + P+ ITY +L                           
Sbjct: 372 GFFKLGHVRTANKWFDEMLSKKISPDYITYTTL--------------------------- 404

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
                   I  +GQ G V +   LF  M  R   PD +T+ T+I  Y   G    A +L 
Sbjct: 405 --------IQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLH 456

Query: 335 NKMIAM 340
           N+M+ M
Sbjct: 457 NEMVQM 462


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 163/353 (46%), Gaps = 38/353 (10%)

Query: 4   LGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           LG  ++  +A  LF E  L+  +KP    Y AL+  Y + G L  A   +++M S     
Sbjct: 133 LGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEM-SQCGVA 191

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT-------------------- 102
           PD  TYS+L+ + T+  R++    +L EM   G++ S+                      
Sbjct: 192 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAV 251

Query: 103 ---------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
                          YN +ID +GK         +F  M E G   PD+ T N++I A+ 
Sbjct: 252 LREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEG-IEPDVVTWNTLIDAHC 310

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G  ++  + ++E           T NI+    G    ++ + +++  M+++   P ++
Sbjct: 311 KGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNII 370

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  +++ +G++G  ++  +  + MK  G+KP+S  Y +LV+AY++ GL     ++++ +
Sbjct: 371 TYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAM 430

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
               +   T   N +I+A+G+   + +   +   MKE    PD IT+ T+++A
Sbjct: 431 RADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKA 483



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 150/336 (44%), Gaps = 1/336 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
             + + P+ A  L     + GL P  +  TAL+S+ G +  + EA +   +     + KP
Sbjct: 98  FARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKP 157

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
               Y+ L+K   K       E++L EMS  G+     TY+ ++D Y +A ++E      
Sbjct: 158 RTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILL 217

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E+ G  P  +  + +++ + + G  +K      E +  GV+ D    N++  ++G+
Sbjct: 218 KEM-EADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGK 276

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
                      D M++    P VVT+N +I+   K G  ++  E F +M+       + T
Sbjct: 277 YNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTT 336

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +++   +      V+++L +++   ++ +   +  ++  YG++G  ++  +    MK
Sbjct: 337 YNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMK 396

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
                P +  +  ++ AY   G+ + A N+   M A
Sbjct: 397 ADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRA 432



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 151/319 (47%), Gaps = 10/319 (3%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  + E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M + S  +PD 
Sbjct: 206 RAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHA-SGVRPDR 264

Query: 66  YTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           + Y+++I +  K+    H  D  +++  E    GIE   VT+NT+ID + K  + +    
Sbjct: 265 HFYNVMIDTFGKYNCLGHAMDAFDRMREE----GIEPDVVTWNTLIDAHCKGGRHDRAIE 320

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M ES  C     T N MI+  G     E +E    E    G+  +I T   L   Y
Sbjct: 321 LFDEMRESN-CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVY 379

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           GR+G + +    ++ M+     P+   Y+ ++  + + G  +      K M+  G++ ++
Sbjct: 380 GRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEAST 439

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +   SL++A+ +   I +  S+L+ ++ + +  D   +  ++ A  +    EK+  ++  
Sbjct: 440 VVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEE 499

Query: 302 MKERHCVPDNITFATMIQA 320
           M    C PD    A +  A
Sbjct: 500 MITSGCAPDRKARAMLRSA 518



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 134/302 (44%), Gaps = 3/302 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           L+P   +++ L+SA+ ++ L D A   +   +++    P     + LI S     R    
Sbjct: 84  LEPDAPLFSDLISAFARARLPDAALELLASAQAIG-LTPRSNAVTALISSLGSARRVAEA 142

Query: 85  EKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           E +  E    G I+     YN ++ GY K    +  E     M +  G  PD  T + ++
Sbjct: 143 EALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQC-GVAPDEATYSLLV 201

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AY  +G  E       E    GVK      + +   +   G + K  +V+  M      
Sbjct: 202 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 261

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P    YN++I+TFGK   +    + F +M+  G++P+ +T+ +L+ A+ K G   +   +
Sbjct: 262 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 321

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             ++  S+  L T  +N +I+  G+    E +  +   MKE+  VP+ IT+ T++  Y  
Sbjct: 322 FDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGR 381

Query: 324 LG 325
            G
Sbjct: 382 SG 383



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 126/285 (44%), Gaps = 3/285 (1%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S  +PD   +S LI +  +    D   ++LA    +G+   +     +I   G A++  E
Sbjct: 82  SRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAE 141

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E+ F     +G   P     N+++  Y   G+++  E+  +E +  GV  D  T ++L 
Sbjct: 142 AEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 201

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y RAG ++  R ++  M+     P+   ++ ++  F   G  +K     ++M   G++
Sbjct: 202 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 261

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+   Y  ++  + K   +        ++    +  D   +N +I A+ + G  ++  EL
Sbjct: 262 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 321

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           F  M+E +C     T+  MI   N LG  +  + +E  +  MKE 
Sbjct: 322 FDEMRESNCPLGTTTYNIMI---NLLGEEQRWEGVEAMLAEMKEQ 363


>gi|255661218|gb|ACU25778.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
          Length = 426

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 153/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ G  D+A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPDRYTYSTLITHFGKEGRFDDALSWLQKMEE--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   GI    V YN++I+ +GKAK F+E  S    M  +G            
Sbjct: 62  KAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG  G  ++ +K +     M ++
Sbjct: 122 TMYVENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGXRKMEIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M++RG++PN+ITY +++S + K G + +   + +++ +S + +D   +  +I  Y +
Sbjct: 242 IQEMQNRGIEPNTITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMIITYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI   T I      G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 339



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 151/347 (43%), Gaps = 39/347 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  +   G+ P +  Y ++++ +G++ L  EA S I +M++ +   P+  +YS L
Sbjct: 62  KAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRT-AGVMPNTISYSTL 120

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    +  +F     + AEM  +      +T N +ID YG+    +E +  F        
Sbjct: 121 LTMYVENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKLFWGX-RKME 179

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYD 188
             P++ + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++
Sbjct: 180 IEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHE 236

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK--------------- 233
           K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++               
Sbjct: 237 KANNLIQEMQNRGIEPNTITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQVLYQTMI 296

Query: 234 ----------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
                           H   +P++I   + +   + AG I +   + RQ   +  + D  
Sbjct: 297 ITYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATWVFRQAIEAGEVKDIT 356

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            F  +I  + +      + E+F  M+     PD+   A ++ AY  L
Sbjct: 357 VFEHMIDLFSKYKKYSNIIEVFDKMRGIGYFPDSRVIALVLNAYGKL 403



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGH-------IEKMEE----------------------- 227
           + R   P   TY+ +I  FGK G        ++KMEE                       
Sbjct: 1   RXRALSPDRYTYSTLITHFGKEGRFDDALSWLQKMEEDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G+ P+ + Y S+++ + KA L  +  S++ ++  + V+ +T  ++ +
Sbjct: 61  SKAISIFSRLKRSGITPDLVAYNSMINVFGKAKLFKEARSLIGEMRTAGVMPNTISYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C  D IT   MI  Y  LGM + A  L
Sbjct: 121 LTMYVENKKFIEALSVFAEMREIQCSLDLITCNIMIDVYGQLGMAKEADKL 171


>gi|410110131|gb|AFV61145.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           rehmannii]
          Length = 379

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 5/272 (1%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T++  Y + KKF E
Sbjct: 34  SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTSSYSTLLTMYVENKKFLE 93

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG++ ++ + N L 
Sbjct: 94  ALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL 152

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK     ++M+ RG++
Sbjct: 153 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 212

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY +AG V     L
Sbjct: 213 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 272

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              +K     PDNI   T I      G  E A
Sbjct: 273 LHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 167/361 (46%), Gaps = 41/361 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L
Sbjct: 23  KAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKT-AGVMPNTSSYSTL 81

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMG 140

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYD 188
             P++ + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++
Sbjct: 141 IEPNVVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHE 197

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K  +++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++
Sbjct: 198 KANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMI 257

Query: 249 SAYSKAGLIMKVDSILRQVENSDVI-LDTPF---------------FNCIISAYGQAGDV 292
            AY +AGL+     +L +++  D I  DT                 F   I A G+  D+
Sbjct: 258 VAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDA-GEVKDI 316

Query: 293 ---EKM-------------GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
              E+M              E+F  M+     PD+   A ++ AY  L   + A ++  +
Sbjct: 317 TVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQXFDKANDVYME 376

Query: 337 M 337
           M
Sbjct: 377 M 377



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 135/274 (49%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAIAIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  GEM-KTAGVMPNTSSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D I F TMI AY   G+   A+ L +++
Sbjct: 243 SSGVEIDQILFQTMIVAYERAGLVAHAKRLLHEL 276



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 31/259 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 179

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K       F+
Sbjct: 180 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 239

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ SS        F  M+   E  G              PD    ++ I     +G IE+
Sbjct: 240 KLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEE 299

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +     +   Y  +  V D M+   +FP      +V+ 
Sbjct: 300 ATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLN 359

Query: 215 TFGKAGHIEKMEEYFKKMK 233
            +GK    +K  + + +M+
Sbjct: 360 AYGKLQXFDKANDVYMEMQ 378


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 155/348 (44%), Gaps = 3/348 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + ++ + A   F  +L  G+K  V V ++L+     +   DEA   +        C PD 
Sbjct: 115 RARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHRMPELGCVPDA 174

Query: 66  YTYSILIKSCTKFHRFDLIEKIL--AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            +YS ++KS     R      IL  A     G  C+ V Y+T++ G  K  K  E    F
Sbjct: 175 ISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLF 234

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M + G   P++ T NS+I A   +  ++K +    +    GV+ D  T N L   Y  
Sbjct: 235 HEMTQQG-VPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYST 293

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +   +   M  R   P  VT +  +    K G IE+  E+F  M  +G K N I+
Sbjct: 294 LGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIIS 353

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+  Y+ AG ++ + ++   +    ++ +   FN +++ Y + G V +   +F  M+
Sbjct: 354 YSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQ 413

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
           +R   PD +T+  +I A+  +G  + A +  N MI         + QC
Sbjct: 414 KRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQC 461



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 149/321 (46%), Gaps = 2/321 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G   +V VY+ +V    + G + EA    ++M       P+V TY+ +I +  K    D 
Sbjct: 206 GCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQ-QGVPPNVVTYNSVIHALCKARAVDK 264

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            + IL +M   G++   VTYNT+I GY    ++++    F  M  S G  P+  T ++ +
Sbjct: 265 AQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMT-SRGVIPNTVTCSTFV 323

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           +     G IE+  ++++     G K +I + + L   Y  AG    M ++ + M +    
Sbjct: 324 AFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIV 383

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P    +NI++  + K G + +    F+ M+ RG+ P+ +TY +++ A+ + G +      
Sbjct: 384 PNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDK 443

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              + +  V  +   + C+I  +   GD+ K  EL   ++ +   P  ++FA++I     
Sbjct: 444 FNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCK 503

Query: 324 LGMTEAAQNLENKMIAMKENS 344
            G    AQ + + +I   E +
Sbjct: 504 EGRVFEAQRIFDMIIRTGEKA 524



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 151/330 (45%), Gaps = 4/330 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  M   G+ P+V  Y +++ A  ++  +D+A   +  M   +  +PD  TY+ L
Sbjct: 229 EACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVG-NGVQPDNVTYNTL 287

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I   +   ++    ++  EM+  G+  + VT +T +    K  + EE    F +M+  G 
Sbjct: 288 IHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKG- 346

Query: 132 CHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            H  +I + ++++  Y  +G +  M   +N     G+  +    NIL   Y + GM  + 
Sbjct: 347 -HKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREA 405

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + + MQKR   P V+TY  VI  F + G ++   + F  M  +G++PN   Y  L+  
Sbjct: 406 MFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQG 465

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           +   G ++K + ++ ++ N  +      F  +I+   + G V +   +F  +       D
Sbjct: 466 FCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKAD 525

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAM 340
              F ++I  Y  +G    A  + + M+++
Sbjct: 526 VNIFTSLIDGYCLIGKMSEAFRVHDAMVSV 555



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 4/286 (1%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+    +A  +F++++  G K  V+++T+L+  Y   G + EAF   + M SV   +PD
Sbjct: 502 CKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVG-IEPD 560

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY  L+  C K  R D    +  E+ + G++ +  TY  I+DG   A +    +  F 
Sbjct: 561 IVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQ 620

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+ESG     I T + +++    +   E+    + +   M VK DI  LNI+     +A
Sbjct: 621 EMIESG-IAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKA 679

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              ++   +   +      PTV TY I++E   K G +E+ E  F  M   G+ P S   
Sbjct: 680 RRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFI 739

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
             +V    + G I+K    + +V+   ++ +    + ++S +   G
Sbjct: 740 NVIVRTLLEKGEIVKAGIYMCRVDGKSILFEASTASMLLSLFSCKG 785



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 129/282 (45%), Gaps = 10/282 (3%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P VYTYSILI  C +  R DL       +   G++   +  ++++ G   AK+ +E    
Sbjct: 101 PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDV 160

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK------ADIQTLNI 176
               +   GC PD  + ++++ +  + G      +W  +   M VK       ++   + 
Sbjct: 161 LFHRMPELGCVPDAISYSTVLKSVCDDGR----SQWALDILRMAVKQGGGCPCNVVVYST 216

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +     + G   +   +   M ++   P VVTYN VI    KA  ++K +   ++M   G
Sbjct: 217 VVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNG 276

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           ++P+++TY +L+  YS  G   +   + +++ +  VI +T   +  ++   + G +E+  
Sbjct: 277 VQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAR 336

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           E F +M  +    + I+++T++  Y   G      NL N M+
Sbjct: 337 EFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMV 378



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 120/273 (43%), Gaps = 8/273 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF +M+ DG+ P+  V+  LV+ Y + G++ EA     DM+      PDV TY  +I + 
Sbjct: 373 LFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQK-RGLNPDVLTYLAVIHAF 431

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESGGC 132
            +    D        M   G+E +   Y  +I G+   G   K EE+       + + G 
Sbjct: 432 CRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYE----IRNKGL 487

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            P I +  S+I+     G + + ++ ++     G KAD+     L   Y   G   +   
Sbjct: 488 GPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFR 547

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V D M      P +VTY  ++    K G I+     F+++ H+G+KP + TY  ++    
Sbjct: 548 VHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLF 607

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
            AG       + +++  S + +  P ++ +++ 
Sbjct: 608 HAGRTAAAKEMFQEMIESGIAVTIPTYSILLTG 640



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 149/336 (44%), Gaps = 8/336 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC    +A  +FE M   GL P V  Y A++ A+ + G +D+A    N M      +P+ 
Sbjct: 398 KCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMID-KGVEPNF 456

Query: 66  YTYSILIKS-CTKFHRFDLI--EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
             Y  LI+  CT     DL+  E+++ E+   G+    +++ ++I+   K  +  E +  
Sbjct: 457 AVYQCLIQGFCT---HGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRI 513

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  ++ +G    D+    S+I  Y   G + +  + ++    +G++ DI T   L     
Sbjct: 514 FDMIIRTGE-KADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCC 572

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D    +   +  +   PT  TY I+++    AG     +E F++M   G+     
Sbjct: 573 KNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIP 632

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L++   +     +  ++ +++   +V  D    N +IS   +A   E+   LF ++
Sbjct: 633 TYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASI 692

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +   VP   T+  M++     G  E A+ + + M+
Sbjct: 693 PDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVML 728



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/369 (17%), Positives = 142/369 (38%), Gaps = 35/369 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A  +   M+ +G++P    Y  L+  Y   G   +A     +M S     P
Sbjct: 256 LCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTS-RGVIP 314

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  T S  +    K  R +   +    M   G + + ++Y+T++ GY  A    +M + F
Sbjct: 315 NTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLF 374

Query: 124 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
           + MV  G                                  G +PD+ T  ++I A+   
Sbjct: 375 NLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRM 434

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G+++     +N     GV+ +      L + +   G   K   ++  ++ +   P ++++
Sbjct: 435 GSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSF 494

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
             +I    K G + + +  F  +   G K +   + SL+  Y   G + +   +   + +
Sbjct: 495 ASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVS 554

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
             +  D   +  +++   + G ++    LF  +  +   P   T+  ++      G T A
Sbjct: 555 VGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAA 614

Query: 330 AQNLENKMI 338
           A+ +  +MI
Sbjct: 615 AKEMFQEMI 623


>gi|255661204|gb|ACU25771.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 426

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 153/342 (44%), Gaps = 41/342 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFD 82
            L P    Y+ L++ +G+ GL D+A S +  M+   D  P D+  YS LI+   K   + 
Sbjct: 4   ALSPERYTYSTLITHFGKEGLFDDALSWLQXMEQ--DRVPGDLVLYSNLIELSRKLCDYS 61

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------------ 130
               I + +   GI    V YN++I+ +GKAK F+E  S  S M  +G            
Sbjct: 62  KAISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTLL 121

Query: 131 ----------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
                                  C  D+ T N MI  YG     ++ +K +     +G++
Sbjct: 122 TMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSMRKIGIE 181

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK    
Sbjct: 182 PNVISYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANNL 241

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++M + G++PN+ITY +++S + K G + +   + +++ +S V +D   +  +I AY +
Sbjct: 242 IQEMHNXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYER 301

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           AG V     L   +K     PDNI   T        G  E A
Sbjct: 302 AGLVAHAKRLLHELKR----PDNIPRDTAXHILAGAGRIEEA 339



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/343 (21%), Positives = 150/343 (43%), Gaps = 39/343 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G+ P    Y ++++ +G++ L  EA S I++MK+ +   PD  +YS L+   
Sbjct: 66  IFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKT-AGVXPDTVSYSTLLTMY 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F +M    G  P+
Sbjct: 125 VENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKLFWSM-RKIGIEPN 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 184 VISYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNTMMMIYGKTLEHEKANN 240

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  M      P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 241 LIQEMHNXGIEPNAITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQVLYQTMIVAYE 300

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   +     + AG I +   + RQ  ++  + D   F+ 
Sbjct: 301 RAGLVAHAKRLLHELKRPDNIPRDTAXHILAGAGRIEEATWVFRQAIDAGEVKDITVFSR 360

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           +I  + +      + E+F  M+     PD+   A ++ AY  L
Sbjct: 361 MIDLFSKYKKYANVVEVFDKMRGLGYFPDSNVIALVLNAYGKL 403



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 35/171 (20%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAG-------HIEKMEE----------------------- 227
           ++R   P   TY+ +I  FGK G        ++ ME+                       
Sbjct: 1   RZRALSPERYTYSTLITHFGKEGLFDDALSWLQXMEQDRVPGDLVLYSNLIELSRKLCDY 60

Query: 228 -----YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F ++K  G+ P+ + Y S+++ + KA L  +  S++ +++ + V  DT  ++ +
Sbjct: 61  SKAISIFSRLKRSGITPDXVAYNSMINVFGKAKLFKEARSLISEMKTAGVXPDTVSYSTL 120

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++ Y +     +   +F  M+E  C  D  T   MI  Y  L M + A  L
Sbjct: 121 LTMYVENQKFLEALSVFAEMREIKCSLDLTTCNIMIDVYGQLDMAKEADKL 171


>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
 gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
          Length = 410

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 156/327 (47%), Gaps = 4/327 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F+VM   G+ P+   YTAL+  Y   G  +  F+ + +M+     +P++YTY+ L
Sbjct: 56  EARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEMRR-GGVEPNLYTYNCL 114

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    +   F     +  EM   G+  + V+YN +I G  +  K ++    F AM   G 
Sbjct: 115 VGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRREG- 173

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-GMYDKM 190
            HP + T N +I  YG +G +     ++N+    G++  + T N L   + RA  +   +
Sbjct: 174 IHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAI 233

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R+  D M++R   PT VTY I+I  F K   +++  E   +M+  G++ +  +Y  L+ A
Sbjct: 234 RAFSD-MKERRLAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHA 292

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G +M    + + +++  V  +   ++ +I  YG+ G   K   L + M++   +P+
Sbjct: 293 LCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPN 352

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
             ++   I+     G  + A+ L   M
Sbjct: 353 VASYCLTIRLLCNEGKCQEAEALIGDM 379



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 130/310 (41%), Gaps = 36/310 (11%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            D   DV   + L+  C +        ++   M  LG+  + VTY  +I GY   +   E
Sbjct: 32  GDAALDVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGY-FVRGQRE 90

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           M  +    +  GG  P+++T N ++  +  +G  +     ++E  L GV  ++ + NIL 
Sbjct: 91  MGFALVGEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILI 150

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               R G       + + M++    P++VT+N++I+ +GKAG +     +F +MK  G++
Sbjct: 151 AGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQ 210

Query: 239 PNSITYCSLVSAYSKAGLIM-----------------------------------KVDSI 263
           P+ +TY  L+  + +A  I                                    +   +
Sbjct: 211 PSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKENEMDRAFEM 270

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L ++E + + +D   +  ++ A    G +    +LF +M  +   P+N+ +  MI  Y  
Sbjct: 271 LSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGR 330

Query: 324 LGMTEAAQNL 333
            G +  A  L
Sbjct: 331 EGSSYKALRL 340



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 117/268 (43%), Gaps = 4/268 (1%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           C+  E   A LLF+ M   G+  +V  Y  L++   + G L +A      M+      P 
Sbjct: 119 CRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRHGKLKDAAQLFEAMRR-EGIHPS 177

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + T+++LI    K  +         +M   G++ S VTYN +I G+ +A+       +FS
Sbjct: 178 MVTFNLLIDGYGKAGKMSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFS 237

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E     P   T   +I A+     +++  +  +E    G++ D+Q+  +L  +    
Sbjct: 238 DMKERR-LAPTKVTYTILIGAFAKENEMDRAFEMLSEMEKAGLEVDVQSYGVLLHALCME 296

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G     R +   M  +   P  V Y+++I  +G+ G   K      +M+  G+ PN  +Y
Sbjct: 297 GKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVASY 356

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDV 272
           C  +      G   + ++++  +E++ +
Sbjct: 357 CLTIRLLCNEGKCQEAEALIGDMEDAGL 384



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 111/243 (45%), Gaps = 10/243 (4%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G C+  +   A+ LFE M  +G+ PS+  +  L+  YG++G +  A    N MK+ 
Sbjct: 148 ILIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKA- 206

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +  +P V TY+ LI    +        +  ++M    +  + VTY  +I  + K     E
Sbjct: 207 AGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTILIGAFAKEN---E 263

Query: 119 MESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           M+ +F  +  +E  G   D+ +   ++ A    G +    K +   +  GVK +    ++
Sbjct: 264 MDRAFEMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDSKGVKPNNVLYDM 323

Query: 177 LTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
           +   YGR G  Y  +R +M+ M+K    P V +Y + I      G  ++ E     M+  
Sbjct: 324 MIYGYGREGSSYKALRLIME-MRKSGLIPNVASYCLTIRLLCNEGKCQEAEALIGDMEDA 382

Query: 236 GMK 238
           G++
Sbjct: 383 GLQ 385



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 70/170 (41%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           D+     L     ++G   + R V D M +    P  VTY  +I  +   G  E      
Sbjct: 37  DVAACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALV 96

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
            +M+  G++PN  TY  LV  + + G       +  ++    V+ +   +N +I+   + 
Sbjct: 97  GEMRRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYNILIAGLCRH 156

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           G ++   +LF  M+     P  +TF  +I  Y   G    A +  N+M A
Sbjct: 157 GKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGKMSNALHFFNQMKA 206


>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
 gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
          Length = 447

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 168/342 (49%), Gaps = 11/342 (3%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           ++M G CK  E  QA  L + M S+G++P+V ++T ++     +G + +A   ++  +  
Sbjct: 35  ILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQAL--LHFRRIG 92

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            DC P+VYTYS L+ +  K  +      ++ EM   G   + VTYN +IDG+ K ++ +E
Sbjct: 93  EDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDE 152

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL- 177
           +      M + G C  D+ T   ++  +  + +I++  +  N       K ++ T N L 
Sbjct: 153 VLMLLKEMSQRG-CRADVITYTMILDIFCKNNSIDEAYRLLNALE----KRNVVTYNSLF 207

Query: 178 -TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
              S        +  S+++ M +    P  V Y  V+    K   +++  +    M  +G
Sbjct: 208 TALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQG 267

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
            K + ++Y  LV A++ AG       +L ++  S  ILDT   N +I  + +AGD+ +  
Sbjct: 268 CKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAH 327

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +LF +M +R  +P N+T+ T+I A+      + A  L ++MI
Sbjct: 328 QLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMI 369



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 148/344 (43%), Gaps = 46/344 (13%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA L F  +  D   P+V  Y+ LV A  +SG   EA+  + +M     C P+V TY+ L
Sbjct: 83  QALLHFRRIGED-CAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVK-KGCSPNVVTYNAL 140

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K  R D +  +L EMS  G     +TY  I+D + K    +E     +A+ +   
Sbjct: 141 IDGFRKLERLDEVLMLLKEMSQRGCRADVITYTMILDIFCKNNSIDEAYRLLNALEKR-- 198

Query: 132 CHPDIFTLNSMISAYGNSGN---------IEKM--------EKWYNEFNLM--------- 165
              ++ T NS+ +A   +           +EKM        +  Y    LM         
Sbjct: 199 ---NVVTYNSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDE 255

Query: 166 -----------GVKADIQTLNILTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                      G K D  +  IL  ++  AG  YD +  +   +   +   T  T N+VI
Sbjct: 256 AYQVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTK-TMNVVI 314

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
             F KAG + +  + FK M  RG  P+++TY +L+ A+ KA        +L Q+  +D  
Sbjct: 315 HKFCKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFK 374

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            +   +N II ++ +    E+   +F  M +  C PD +++ T+
Sbjct: 375 PNVITYNSIIKSFCREQREEEARGIFQMMVDNGCFPDRVSYTTL 418



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 110/258 (42%), Gaps = 41/258 (15%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L E M+ +G +P+   Y  ++    ++  LDEA+  +  M S   CK D  +Y IL
Sbjct: 220 EALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYS-QGCKTDDVSYKIL 278

Query: 72  IKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           + +     R +D +E +L  M   G      T N +I  + KA    E    F +M + G
Sbjct: 279 VVAFANAGRTYDSLE-LLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMYQRG 337

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P   T N++I A+  +   +   K  ++     ++AD                    
Sbjct: 338 SI-PSNVTYNTLIGAFCKAQQPDTAVKLLHQM----IQAD-------------------- 372

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
                      F P V+TYN +I++F +    E+    F+ M   G  P+ ++Y +L  +
Sbjct: 373 -----------FKPNVITYNSIIKSFCREQREEEARGIFQMMVDNGCFPDRVSYTTLKLS 421

Query: 251 YSKAGLI-MKV-DSILRQ 266
            ++A +   KV D+ LR+
Sbjct: 422 KNEAAIYDQKVHDTYLRK 439



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 69/140 (49%), Gaps = 7/140 (5%)

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V+Y I+++ F KAG  ++  E   +MK  G++PN + + +++     AG + +     R+
Sbjct: 31  VSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHFRR 90

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +   D   +   ++ ++ A  ++G   +   L   M ++ C P+ +T+  +I  +  L  
Sbjct: 91  I-GEDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKL-- 147

Query: 327 TEAAQNLENKMIAMKENSGK 346
               + L+  ++ +KE S +
Sbjct: 148 ----ERLDEVLMLLKEMSQR 163


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 168/369 (45%), Gaps = 39/369 (10%)

Query: 9   QPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           + ++A  L  +M  DG    P V  Y+ +++ + + G LD+ +ST N+M       P+V 
Sbjct: 66  RSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLD-QRISPNVV 124

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY+ +I +  K    D   ++L  M   G+    +TYN+I+ G+  + + +E    F   
Sbjct: 125 TYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE-AIVFLKK 183

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           + S G  PD+ T NS++     +G   +  K ++     G+K +I T   L + Y   G 
Sbjct: 184 MRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA 243

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
             +M  ++D M +    P    ++I++  + K   +E+    F KM+ +G+ PN++TY +
Sbjct: 244 LVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGA 303

Query: 247 LVSAYSKAGLIM-----------------------------------KVDSILRQVENSD 271
           ++    K+G +                                    + + ++ ++ +  
Sbjct: 304 VIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 363

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           + L+T FFN II ++ + G V +  +LF  M      PD IT++T+I  Y   G  + A 
Sbjct: 364 ICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAT 423

Query: 332 NLENKMIAM 340
            L   M+++
Sbjct: 424 KLLASMVSV 432



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 134/296 (45%), Gaps = 5/296 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C +  +   +F+ M   GLKP +  Y  L+  Y   G L E    + D+   +   P+
Sbjct: 207 GRCTEARK---IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPN 262

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            Y +SIL+ +  K  + +    + ++M   G+  +AVTY  +I    K+ + E+    F 
Sbjct: 263 HYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 322

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M++ G   P     NS+I         E+ E+   E    G+  +    N +  S+ + 
Sbjct: 323 QMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 381

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +   + D M +    P ++TY+ +I+ +  AG +++  +    M   GMKP+ +TY
Sbjct: 382 GRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTY 441

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +L++ Y K   +     + R++E+S V  D   +N I+    Q        EL++
Sbjct: 442 STLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 497



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 137/303 (45%), Gaps = 2/303 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L  C + E+A  L   ML  G+  +   + +++ ++ + G + E+    + M  +   KP
Sbjct: 343 LCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG-VKP 401

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+ TYS LI       + D   K+LA M  +G++   VTY+T+I+GY K  + ++    F
Sbjct: 402 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLF 461

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ES G  PDI T N ++     +      ++ Y      G + ++ T NI+     +
Sbjct: 462 REM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCK 520

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
             + D    +   +          T+NI+I+   K G  ++ ++ F      G+ PN  T
Sbjct: 521 NKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWT 580

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +       GL+ ++D +   +E++   +D+   N I+    Q G++ + G     + 
Sbjct: 581 YRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMID 640

Query: 304 ERH 306
           E+H
Sbjct: 641 EKH 643



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 151/342 (44%), Gaps = 11/342 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            K ++ E+A L+F  M   GL P+   Y A++    +SG +++A      M       P 
Sbjct: 274 AKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGLSPG 332

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+ LI      ++++  E+++ EM   GI  + + +N+IID + K  +  E E  F 
Sbjct: 333 NIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFD 392

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            MV  G   PDI T +++I  Y  +G +++  K       +G+K D  T + L   Y + 
Sbjct: 393 LMVRIG-VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKI 451

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
                   +   M+     P ++TYNI+++   +       +E +  +   G +    TY
Sbjct: 452 SRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTY 511

Query: 245 CSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             ++    K  L    D  LR  +N    D+ L+   FN +I A  + G  ++  +LF+ 
Sbjct: 512 NIILHGLCKNKL---TDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVA 568

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
                 VP+  T+  M +     G+ E    L+   ++M++N
Sbjct: 569 FSSNGLVPNYWTYRLMAENIIGQGLLE---ELDQLFLSMEDN 607



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 145/325 (44%), Gaps = 2/325 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           QP++A +  + M SDG++P V  Y +L+    ++G   EA    + M      KP++ TY
Sbjct: 173 QPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTK-RGLKPEITTY 231

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
             L++          +  +L  M   GI  +   ++ ++  Y K +K EE    FS M +
Sbjct: 232 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 291

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G  +P+  T  ++I     SG +E    ++ +    G+       N L         ++
Sbjct: 292 QG-LNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWE 350

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   ++  M  R      + +N +I++  K G + + E+ F  M   G+KP+ ITY +L+
Sbjct: 351 RAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 410

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             Y  AG + +   +L  + +  +  D   ++ +I+ Y +   ++    LF  M+     
Sbjct: 411 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVS 470

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
           PD IT+  ++Q       T AA+ L
Sbjct: 471 PDIITYNIILQGLFQTRRTAAAKEL 495



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 108/237 (45%), Gaps = 1/237 (0%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           +YN +++G     + +E       M + GG C PD+ + +++I+ +   G+++K    YN
Sbjct: 53  SYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYN 112

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E     +  ++ T N +  +  +A   DK   V+  M K    P  +TYN ++  F  +G
Sbjct: 113 EMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSG 172

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
             ++   + KKM+  G++P+ +TY SL+    K G   +   I   +    +  +   + 
Sbjct: 173 QPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYG 232

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            ++  Y   G + +M  L   M      P++  F+ ++ AY      E A  + +KM
Sbjct: 233 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKM 289


>gi|359490014|ref|XP_002275213.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 160/322 (49%), Gaps = 5/322 (1%)

Query: 2   VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           VML  C +    E A  +   M + G+  +   Y ALV  YG++G L++ ++ I +M S 
Sbjct: 98  VMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEM-SR 156

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PD + YS +I        +    +I+ E+  +G+      YN+IID +GK  +  E
Sbjct: 157 DGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSE 216

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  M E G   PDI T NS+I  +  +G++ K  + +++    G+  D +    + 
Sbjct: 217 ALEVFEKMQEEG-VKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITII 275

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
              G  G +D ++   + M+ R    +   Y I+++ +G+ G  +  EE    +K  G++
Sbjct: 276 SRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQ 335

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++  +C L +AY++ GL  +   +L+ +E   +  +    N +I+A+G AG   +   +
Sbjct: 336 PSASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSV 395

Query: 299 FLTMKERHCVPDNITFATMIQA 320
           +  +K+    PD +T++T+++A
Sbjct: 396 YHHIKDTGISPDVVTYSTLMKA 417



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 8/321 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   M + G   S+  YT ++ A G  G   EA +   +M  +   K D+  Y++
Sbjct: 40  DKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLG-LKLDLRVYNV 98

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +++SC +    +L +K+LAEM  LGI  +  TY  ++D YG+A +  ++ +    M   G
Sbjct: 99  MLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDG 158

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD F  + +I  Y ++G  +K  +   E   MGV  D +  N +  ++G+ G   + 
Sbjct: 159 -FGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEA 217

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V + MQ+    P ++T+N +I+   KAG + K  E F KM+  G+ P+   + +++S 
Sbjct: 218 LEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISR 277

Query: 251 YSKAGLIMKVDSILRQVENSDVI---LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
             + G   K D I R  EN            +  ++  YGQ G  +   E    +K    
Sbjct: 278 LGEQG---KWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGI 334

Query: 308 VPDNITFATMIQAYNALGMTE 328
            P    F  +  AY   G+ E
Sbjct: 335 QPSASMFCVLANAYAQQGLCE 355



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 2/280 (0%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y+  I+   +    D   K+LA+M  LG   S  +Y T+I+  G   +  E E+ F  M
Sbjct: 25  VYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREM 84

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           V  G    D+   N M+ +    G +E  +K   E + +G+  +  T   L   YGRAG 
Sbjct: 85  VHLG-LKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGR 143

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            + + +V+  M +  F P    Y+ VI  +   G  +K  E  ++++  G+  +   Y S
Sbjct: 144 LNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNS 203

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++  + K G + +   +  +++   V  D   +N +I  + +AGDV K  ELF  M+E  
Sbjct: 204 IIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEG 263

Query: 307 CVPDNITFATMIQAYNALGMTEA-AQNLENKMIAMKENSG 345
             PD   F T+I      G  +   +N EN      + SG
Sbjct: 264 LYPDPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSG 303



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 1/243 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G E S V YN  I    +    ++     + M E+ G    + +  ++I A G+ G   +
Sbjct: 18  GEELSGVVYNARIRESCRVGDVDKAMKLLAQM-EALGFSLSLGSYTTVIEALGSVGRTLE 76

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
            E  + E   +G+K D++  N++ +S  R G+ +    V+  M          TY  +++
Sbjct: 77  AEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVD 136

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +G+AG +  +     +M   G  P+S  Y  ++  Y   G+  K   I+R++    V L
Sbjct: 137 YYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSL 196

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           D   +N II  +G+ G++ +  E+F  M+E    PD +T+ ++IQ +   G    A  L 
Sbjct: 197 DKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELF 256

Query: 335 NKM 337
           +KM
Sbjct: 257 SKM 259



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 127/305 (41%), Gaps = 52/305 (17%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GKC +  +A  +FE M  +G+KP +  + +L+  + ++G + +A    + M+      P
Sbjct: 208 FGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQE-EGLYP 266

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   +  +I    +  ++D+I++    M   G + S   Y  ++D YG+  +F+  E   
Sbjct: 267 DPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECI 326

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           SA+                                       G++       +L  +Y +
Sbjct: 327 SALKSE------------------------------------GIQPSASMFCVLANAYAQ 350

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSI 242
            G+ ++   V+  M+     P ++  N++I  FG AG H+E +  Y   +K  G+ P+ +
Sbjct: 351 QGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSVYH-HIKDTGISPDVV 409

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+ A  +A    KV  I  ++E++    D      + +A              L +
Sbjct: 410 TYSTLMKACIRARKFDKVPEIYEEMESAGCTPDRKAREMLQTA-------------LLVL 456

Query: 303 KERHC 307
           ++RHC
Sbjct: 457 QQRHC 461



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 77/166 (46%)

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G  DK   ++  M+   F  ++ +Y  VIE  G  G   + E  F++M H G+K +  
Sbjct: 35  RVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLR 94

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y  ++ +  + GL+   D +L +++   +  +   +  ++  YG+AG +  +  +   M
Sbjct: 95  VYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEM 154

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 348
                 PD+  ++ +I  Y   GM + A  +  ++  M  +  K++
Sbjct: 155 SRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRI 200


>gi|356567150|ref|XP_003551784.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Glycine max]
          Length = 875

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 151/318 (47%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+     +A  L   M + GL+P++  Y A++ A  +  L  E      +    + C P
Sbjct: 234 LGRNDCFSEAVSLLRSMGNFGLEPNLVTYNAIIDAGAKGELPFEIVVKFLEEMIAAGCLP 293

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY+ L+K+C    R+ L   +LAEM + GI     TYNT +D   K  + +    + 
Sbjct: 294 DRLTYNSLLKTCVAKGRWQLCRDLLAEMEWKGIGRDVYTYNTYVDALCKGGRMDLARHAI 353

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              + +    P++ T +++++ Y  +   E     Y+E   + ++ D  + N L   Y  
Sbjct: 354 DVEMPAKNILPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVSYNTLVGLYAN 413

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G +++       M+       VVTYN +IE +G+     ++ + F +MK R + PN +T
Sbjct: 414 LGWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVRKLFDEMKARRIYPNDLT 473

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+  Y+K  +  +   + R+++   +  D  F++ +I A  + G +E    L   M 
Sbjct: 474 YSTLIKIYTKGRMYAEAMDVYRELKQEGMKTDVVFYSALIDALCKNGLIESSLRLLDVMT 533

Query: 304 ERHCVPDNITFATMIQAY 321
           E+   P+ +T+ ++I A+
Sbjct: 534 EKGSRPNVVTYNSIIDAF 551



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 121/258 (46%), Gaps = 1/258 (0%)

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VY++S +I +  +   F     +L  M   G+E + VTYN IID   K +   E+   F 
Sbjct: 224 VYSFSAMISALGRNDCFSEAVSLLRSMGNFGLEPNLVTYNAIIDAGAKGELPFEIVVKFL 283

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             + + GC PD  T NS++      G  +       E    G+  D+ T N    +  + 
Sbjct: 284 EEMIAAGCLPDRLTYNSLLKTCVAKGRWQLCRDLLAEMEWKGIGRDVYTYNTYVDALCKG 343

Query: 185 GMYDKMRSVMDF-MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           G  D  R  +D  M  +   P VVTY+ ++  + KA   E     + +MKH  ++ + ++
Sbjct: 344 GRMDLARHAIDVEMPAKNILPNVVTYSTLMAGYSKAERFEDALNIYDEMKHLLIRLDRVS 403

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +LV  Y+  G   +     +++E   +  D   +N +I  YG+     ++ +LF  MK
Sbjct: 404 YNTLVGLYANLGWFEEAVGKFKEMECCGIKNDVVTYNALIEGYGRHNKYVEVRKLFDEMK 463

Query: 304 ERHCVPDNITFATMIQAY 321
            R   P+++T++T+I+ Y
Sbjct: 464 ARRIYPNDLTYSTLIKIY 481



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M +  + P+   Y+ L+  Y +  +  EA     ++K     K DV  YS LI + 
Sbjct: 458 LFDEMKARRIYPNDLTYSTLIKIYTKGRMYAEAMDVYRELKQ-EGMKTDVVFYSALIDAL 516

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME----SSFSA 125
            K    +   ++L  M+  G   + VTYN+IID +   ++   +E    +SF A
Sbjct: 517 CKNGLIESSLRLLDVMTEKGSRPNVVTYNSIIDAFRIGQQLPALECAVDTSFQA 570


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 37/330 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L + M+  G KP +     LV+    SG   EA   I+ M     C+P+  TY  +
Sbjct: 274 EALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYG-CQPNAVTYGPV 332

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    K  +  L  ++L +M    I+  AV Y+ IIDG  K                   
Sbjct: 333 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK------------------- 373

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
                             G+++     +NE  + G+  +I T NIL   +  AG +D   
Sbjct: 374 -----------------HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 416

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++  M KR   P VVT++++I++F K G + + EE  K+M HRG+ P++ITY SL+  +
Sbjct: 417 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 476

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K   + K + ++  + +     +   FN +I+ Y +A  ++   ELF  M  R  V D 
Sbjct: 477 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 536

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +T+ T+IQ +  LG    A+ L  +M++ K
Sbjct: 537 VTYNTLIQGFCELGKLNVAKELFQEMVSRK 566



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 144/332 (43%), Gaps = 2/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  Q   A  L   M    +K     Y+ ++    + G LD AF+  N+M+ +     ++
Sbjct: 338 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME-MKGITTNI 396

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ILI       R+D   K+L +M    I  + VT++ +ID + K  K  E E     
Sbjct: 397 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 456

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+  G   PD  T  S+I  +    +++K  +  +     G   +I+T NIL   Y +A 
Sbjct: 457 MIHRG-IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 515

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D    +   M  R      VTYN +I+ F + G +   +E F++M  R + PN +TY 
Sbjct: 516 RIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYK 575

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+      G   K   I  ++E S + LD   +N II     A  V+   +LF ++  +
Sbjct: 576 ILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 635

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              P   T+  MI      G    A+ L  KM
Sbjct: 636 GVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM 667



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 154/336 (45%), Gaps = 6/336 (1%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK    + A  LF  M   G+  ++  Y  L+  +  +G  D+    + DM   
Sbjct: 366 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK- 424

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               P+V T+S+LI S  K  +    E++  EM + GI    +TY ++IDG+ K    ++
Sbjct: 425 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 484

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  MV S GC P+I T N +I+ Y  +  I+   + + + +L GV AD  T N L 
Sbjct: 485 ANQMVDLMV-SKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 543

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           + +   G  +  + +   M  R   P +VTY I+++     G  EK  E F+K++   M+
Sbjct: 544 QGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKME 603

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            +   Y  ++     A  +     +   +    V      +N +I    + G + +   L
Sbjct: 604 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELL 663

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           F  M+E    PD  T+  +I+A+  LG  +A ++++
Sbjct: 664 FRKMEEDGHAPDGWTYNILIRAH--LGDGDATKSVK 697



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 139/304 (45%), Gaps = 10/304 (3%)

Query: 41  QSGLLD----EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 96
           +SGL+D    +A     DM   S   P V  +S L  +  K  ++DL+  +  +M   GI
Sbjct: 159 RSGLVDIKADDAIDLFRDMIH-SRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGI 217

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEK 154
             +  T + +I+ + + +K   +  +FSAM  +   G  P+  T +++I+     G + +
Sbjct: 218 AHNLYTLSIMINCFCRCRK---LCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSE 274

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             +  +    MG K D+ T+N L      +G   +   ++D M +    P  VTY  V+ 
Sbjct: 275 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLN 334

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
              K+G      E  +KM+ R +K +++ Y  ++    K G +    ++  ++E   +  
Sbjct: 335 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITT 394

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           +   +N +I  +  AG  +   +L   M +R   P+ +TF+ +I ++   G    A+ L 
Sbjct: 395 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 454

Query: 335 NKMI 338
            +MI
Sbjct: 455 KEMI 458



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 153/338 (45%), Gaps = 16/338 (4%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + + A  LF  M+     P+V  ++ L SA  ++   D   +    M+ +     ++YT 
Sbjct: 166 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQME-LKGIAHNLYTL 224

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           SI+I    +  +  L    + ++  LG E + +T++T+I+G     +  E       MVE
Sbjct: 225 SIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVE 284

Query: 129 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            G   PD+ T+N++++    SG        I+KM ++  + N +        LN++ KS 
Sbjct: 285 MGH-KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP---VLNVMCKSG 340

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
             A   + +R     M++R      V Y+I+I+   K G ++     F +M+ +G+  N 
Sbjct: 341 QTALAMELLRK----MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNI 396

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           ITY  L+  +  AG       +LR +    +  +   F+ +I ++ + G + +  EL   
Sbjct: 397 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 456

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M  R   PD IT+ ++I  +      + A  + + M++
Sbjct: 457 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 494


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 173/369 (46%), Gaps = 37/369 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K       L + M  +G+ P+   +  L++ + Q GL+  AFS +  +  +   +P
Sbjct: 78  LVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMG-YEP 136

Query: 64  DVYTYSILIKS-CTK--FHR-FDLIEKILA------EMSY---------LG--------- 95
           D+ T +  IK  C K   H+  +  +K++A      ++SY         +G         
Sbjct: 137 DIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLL 196

Query: 96  -------IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
                  ++ +AV YNT+IDG  K K   +    +S MV +    PD+ T +++I  +  
Sbjct: 197 RRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMV-AKRISPDVVTYSALIRGFFI 255

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G ++     +N+  L  +K D+ T NIL   + + G   K ++V+D M  +   P V T
Sbjct: 256 VGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVST 315

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           +N +++ F K   +++ +  F  M  +G+KPN +TYCSL+  Y     + K   I   + 
Sbjct: 316 FNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMS 375

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              V  +   +N +I+ + +   V+K  +LF+ M  +H +PD +T+ ++I      G   
Sbjct: 376 QRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKIS 435

Query: 329 AAQNLENKM 337
            A  L N+M
Sbjct: 436 YAFQLVNEM 444



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 148/297 (49%), Gaps = 16/297 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           + K K    A  L+  M++  + P V  Y+AL+  +   G L +A    N M  + + KP
Sbjct: 218 MSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKM-ILENIKP 276

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DVYT++IL+    K  R    + +L  M    I+ +  T+NT++DG+ K +K +E ++ F
Sbjct: 277 DVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVF 336

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M++  G  P++ T  S++  Y     + K +K +N  +  GV A++ + NI+   + +
Sbjct: 337 AMMMKQ-GIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCK 395

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               DK   +   M  +   P VVTYN +I+   K+G I    +   +M  RG  PN IT
Sbjct: 396 IKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIIT 455

Query: 244 YCSLVSAYSKAGLIMKV-DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           Y S+++A     L+ K+ D  ++   ++D IL        I    Q+G +E   ++F
Sbjct: 456 YNSILNA-----LLTKLKDQGIQPNMHTDTIL--------IKGLCQSGKLEAARKVF 499



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 91/202 (45%)

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
           F  N ++ +   S +   +     +    G+  +  T NIL   + + G+     SV+  
Sbjct: 69  FEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAK 128

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           + K  + P ++T N  I+ F   G I +   +  K+   G   + ++Y +L++   K G 
Sbjct: 129 ILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGE 188

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                 +LR+V+   V L+   +N +I    +   V    +L+  M  +   PD +T++ 
Sbjct: 189 TRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSA 248

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           +I+ +  +G  + A +L NKMI
Sbjct: 249 LIRGFFIVGKLKDAIDLFNKMI 270



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 16/193 (8%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + ++   +F +M+  G+KP+V  Y +L+  Y     +++A    N M S     
Sbjct: 322 GFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTM-SQRGVT 380

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            +V++Y+I+I    K  + D   K+  EM +  I    VTYN++IDG  K+ K       
Sbjct: 381 ANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQL 440

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M + G   P+I T NS+++A         + K  ++    G++ ++ T  IL K   
Sbjct: 441 VNEMHDRGQ-PPNIITYNSILNAL--------LTKLKDQ----GIQPNMHTDTILIKGLC 487

Query: 183 RAGMYDKMRSVMD 195
           ++G  +  R V +
Sbjct: 488 QSGKLEAARKVFE 500



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 16/163 (9%)

Query: 2   VMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C  KQ  +A  +F  M   G+  +V  Y  +++ + +   +D+A     +M    
Sbjct: 354 LMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHH-K 412

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PDV TY+ LI    K  +     +++ EM   G   + +TYN+I++           
Sbjct: 413 HIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILN----------- 461

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
             +    ++  G  P++ T   +I     SG +E   K + + 
Sbjct: 462 --ALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDL 502


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 159/341 (46%), Gaps = 5/341 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA  L + M   G KP V  Y  L++   + G LDEA   +N M S   C+P+V T++I+
Sbjct: 265 QAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYG-CQPNVITHNII 323

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           ++S     R+   EK LAEM   G   S VT+N +I+   +             M + G 
Sbjct: 324 LRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHG- 382

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  + N ++ A      +E+  ++ +     G   DI T N L  +  + G  D   
Sbjct: 383 CTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 442

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +++ +  +   P ++TYN VI+   K G  +   +   +MK +G+KP+ ITY +LV   
Sbjct: 443 EILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGL 502

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           S+ G + +  +    +E   V  +   +N I+    +A    +  +    M  R C P  
Sbjct: 503 SREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTE 562

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA---MKENSGKKLI 349
            ++  +I+     G+ + A  L N++ +   +K++S ++++
Sbjct: 563 TSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVV 603



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 145/327 (44%), Gaps = 5/327 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+     E M+  G  P +   T+L+    ++G   +A   +  ++  S   PDV TY++
Sbjct: 127 EEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILED-SGAVPDVITYNV 185

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K        ++L  MS   +    VTYNTI+     + K +E        ++  
Sbjct: 186 LISGYCKTGEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRE 242

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C+PD+ T   +I A      + +  K  +E    G K D+ T N+L     + G  D+ 
Sbjct: 243 -CYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEA 301

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              ++ M      P V+T+NI++ +    G     E++  +M  +G  P+ +T+  L++ 
Sbjct: 302 IRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINF 361

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + GLI +   +L ++       ++  +N ++ A  +   +E+  E    M  R C PD
Sbjct: 362 LCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPD 421

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            +T+ T++ A    G  + A  + N++
Sbjct: 422 IVTYNTLLTALCKDGKVDVAVEILNQL 448



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 3/205 (1%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           PDI    S+I     +G   K  +        G   D+ T N+L   Y + G   ++ S 
Sbjct: 143 PDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTG---EIGSA 199

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           +  + +    P VVTYN ++ T   +G +++  E   +   R   P+ ITY  L+ A  K
Sbjct: 200 LQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCK 259

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
              + +   +L ++ +     D   +N +I+   + G +++       M    C P+ IT
Sbjct: 260 ESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVIT 319

Query: 314 FATMIQAYNALGMTEAAQNLENKMI 338
              ++++  + G    A+    +MI
Sbjct: 320 HNIILRSMCSTGRWMDAEKFLAEMI 344



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 84/198 (42%), Gaps = 3/198 (1%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N+ +     +G +E+  K+  +    G   DI     L +   + G   K   VM+ ++ 
Sbjct: 114 NNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILED 173

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P V+TYN++I  + K G I    +   +M    + P+ +TY +++     +G + +
Sbjct: 174 SGAVPDVITYNVLISGYCKTGEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGKLKE 230

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +L +    +   D   +  +I A  +   V +  +L   M+++ C PD +T+  +I 
Sbjct: 231 AMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLIN 290

Query: 320 AYNALGMTEAAQNLENKM 337
                G  + A    N M
Sbjct: 291 GICKEGRLDEAIRFLNHM 308



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 6/120 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + + A  L + M   GLKP +  Y+ LV    + G +DEA +  +D++ +   KP
Sbjct: 467 LSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMG-VKP 525

Query: 64  DVYTY-SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEM 119
           +  TY SI++  C        I+  LA M   G + +  +Y  +I+G    G AK+  E+
Sbjct: 526 NAITYNSIMLGLCKARQTVRAID-FLAYMVARGCKPTETSYMILIEGLAYEGLAKEALEL 584


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 155/324 (47%), Gaps = 2/324 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F+ M  D   P+V  YT +V A  +SG   EA +  ++M+    C+P+++TY+++I + 
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRE-RGCEPNIHTYTVMINAM 119

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  + +   +IL EM   G+  S  TYN +IDGY K    E  +     M  S  C+P+
Sbjct: 120 CKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLM-HSNSCNPN 178

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T N +I  +    N+ +     ++     +   + T N L     + G  D    +++
Sbjct: 179 ERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLN 238

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M +    P   TY++ I+T  K G IE+    F  +K +G+K N + Y +L+  Y KAG
Sbjct: 239 LMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAG 298

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +   +S+L ++   D + ++  +N +I    +   V++   L  +M ++       T+ 
Sbjct: 299 KMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYT 358

Query: 316 TMIQAYNALGMTEAAQNLENKMIA 339
            +I A    G  + A  + ++M++
Sbjct: 359 ILIVAMLKEGDFDYAHRILDQMVS 382



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 151/333 (45%), Gaps = 4/333 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   E+   + + M+  GL PSV  Y AL+  Y + G++ EA   I D+   + C P+
Sbjct: 120 CKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMV-EAAQEILDLMHSNSCNPN 178

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ LI    +         +L++M    +  S VTYN++I G  K    +      +
Sbjct: 179 ERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLN 238

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+G   PD +T +  I      G IE+    +N     G+KA+      L   Y +A
Sbjct: 239 LMNENGVV-PDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKA 297

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D   S++D M      P   TYN +I+   K   +++     + M  +G+K    TY
Sbjct: 298 GKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTY 357

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L+ A  K G       IL Q+ +S    D   +   I A+   G++++  ++   M E
Sbjct: 358 TILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFE 417

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           R  +PD +T+  +I AY  LG+   A ++  +M
Sbjct: 418 RGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRM 450



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 152/359 (42%), Gaps = 31/359 (8%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K   +A  L   ML   L PSV  Y +L+    + G LD A+  +N M   +   PD +T
Sbjct: 193 KNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNE-NGVVPDQWT 251

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           YS+ I +  K  R +    +   +   GI+ + V Y  +IDGY KA K ++  S    M+
Sbjct: 252 YSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRML 311

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            +  C P+  T N++I        +++           G+K  + T  IL  +  + G +
Sbjct: 312 -TEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDF 370

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D    ++D M    + P V  Y   I  F   G+I++ E+    M  RG+ P+++TY  +
Sbjct: 371 DYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLV 430

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA---------------------- 285
           + AY   GL+     +L+++ ++        ++C+I                        
Sbjct: 431 IDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNV 490

Query: 286 -YGQAGDVEKMG------ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +    DV KM       ELF  M E  C P+  T+A +I     +G    AQ L + M
Sbjct: 491 FFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHM 549



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 129/295 (43%), Gaps = 2/295 (0%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           ++ AFS  N M     C+ +  +Y+ LI    +  R D    I  +M       +  TY 
Sbjct: 20  VNSAFSVFNMMPK-KGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYT 78

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            I+    ++ +  E  + FS M E G C P+I T   MI+A      +E+  +  +E   
Sbjct: 79  VIVHALFESGRRMEAINLFSEMRERG-CEPNIHTYTVMINAMCKETKLEEGRRILDEMVE 137

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G+   + T N L   Y + GM +  + ++D M      P   TYN +I  F +  ++ +
Sbjct: 138 KGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHR 197

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
                 KM    + P+ +TY SL+    K G +     +L  +  + V+ D   ++  I 
Sbjct: 198 AMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFID 257

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              + G +E+   LF ++KE+    + + +  +I  Y   G  + A +L ++M+ 
Sbjct: 258 TLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLT 312



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 106/257 (41%), Gaps = 16/257 (6%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   ++A LL E M+  GLK +V  YT L+ A  + G  D A   ++ M S S  +
Sbjct: 328 GLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVS-SGYQ 386

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDVY Y+  I +          E +++ M   G+   A+TY  +ID YG           
Sbjct: 387 PDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDV 446

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M ++ GC P   T + +I         E++ K Y    L          N+      
Sbjct: 447 LKRMFDT-GCDPSHHTYSCLIKHLLK----EELTKKYKNVALCD-----SIPNVFFADVA 496

Query: 183 RAGMYDKMRSVMDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                 K  + ++  +K       P + TY  +I    K G +   ++ F  M  RG+ P
Sbjct: 497 DVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSP 556

Query: 240 NSITYCSLVSAYSKAGL 256
           +   Y SL++   + G+
Sbjct: 557 SEAIYNSLLNCCCELGI 573



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 104/249 (41%), Gaps = 14/249 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +  +M   G+ P    YT ++ AYG  GLL+ AF  +  M   + C P  +TYS 
Sbjct: 406 KEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFD-TGCDPSHHTYSC 464

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVT---YNTIIDGYGKAKKFEEMESSFSAMV 127
           LIK   K       E++  +   + + C ++    +  + D + K  KFE     F  M+
Sbjct: 465 LIKHLLK-------EELTKKYKNVAL-CDSIPNVFFADVADVW-KMMKFETALELFEKML 515

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E G C P+I T   +I      G +   +K ++  N  GV       N L       G+Y
Sbjct: 516 EHG-CSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIY 574

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                ++  M +    P + + N++     + G  EK +  F  +   G   + + +  L
Sbjct: 575 GDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKIL 634

Query: 248 VSAYSKAGL 256
           +    K GL
Sbjct: 635 IDGLLKNGL 643


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 152/316 (48%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  L     ++G       +  +V A G+ G  D   + +++M      + DV  Y+ 
Sbjct: 129 EWALALLRWARAEGAADGPAPFEMVVRALGREGRHDAVCALLDEMPLPPGARLDVRAYTT 188

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++ + ++  R++   ++  E+   G+  + VTYN ++D YG+  +      +  A + + 
Sbjct: 189 VLHALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRAA 248

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD FT +++I+A G  G +++   ++ +    G    + T N L + +G+AG Y + 
Sbjct: 249 GVEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEA 308

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V+  M+     P  VTYN +  ++ +AG  ++  +    M  +G+ PN+ TY ++++A
Sbjct: 309 LRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTA 368

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y  AG + +  ++  +++ +  I  T  +N ++   G+      M E+   M    C P+
Sbjct: 369 YGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPN 428

Query: 311 NITFATMIQAYNALGM 326
            +T+ T++      GM
Sbjct: 429 RVTWNTLLAVCGKRGM 444



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 159/346 (45%), Gaps = 7/346 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYS 69
           E+A  LF+ +  +G+ P+   Y  ++  YG+ G       + + DM++ +  +PD +T S
Sbjct: 200 ERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRA-AGVEPDGFTAS 258

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            +I +  +    D       ++   G     VTYN ++  +GKA  + E       M E 
Sbjct: 259 TVIAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLREM-ED 317

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            GC PD  T N +  +Y  +G  ++  K  +     G+  +  T N +  +YG AG  D+
Sbjct: 318 AGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDE 377

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             ++ D M+K  F P   TYN+V+   GK      M E   +M   G  PN +T+ +L++
Sbjct: 378 ALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLA 437

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
              K G+   V  +L  +++  V L    +N +I AYG+ G      +++  M      P
Sbjct: 438 VCGKRGMESYVTRVLEGMKSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAP 497

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIA--MKEN--SGKKLIQC 351
              T+  ++   +  G   AA+++ +KM +   K N  S   L+QC
Sbjct: 498 CLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQC 543



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 171/376 (45%), Gaps = 52/376 (13%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+   + M+  GL P+   Y  +++AYG +G +DEA +  + MK  +   P   TY++
Sbjct: 341 QEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDRMKK-NGFIPYTNTYNL 399

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES- 129
           ++    K  RF  + ++L EMS  G   + VT+NT++   GK      MES  + ++E  
Sbjct: 400 VLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGK----RGMESYVTRVLEGM 455

Query: 130 GGCHPDIF--TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
             C  ++   T N++I AYG  G+     K Y+E    G    + T N L     R G +
Sbjct: 456 KSCKVELCRDTYNTLICAYGRCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDW 515

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-------------------------- 221
              RS++  M+   F P  ++Y+++++   K G+                          
Sbjct: 516 TAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTL 575

Query: 222 ---------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
                    +E +E  F+++K RG KP+ +   S++S Y+K GL  K   +   +E   +
Sbjct: 576 VIANFKCRRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGL 635

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV---------PDNITFATMIQAYNA 323
             D   +N ++  Y ++ +  +  ++   ++              PD +++ T+I  +  
Sbjct: 636 SPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCK 695

Query: 324 LGMTEAAQNLENKMIA 339
            G+ + AQ + ++MIA
Sbjct: 696 EGLIKEAQRVLSEMIA 711



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 132/331 (39%), Gaps = 2/331 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK     +A  +   M   G KP    Y  L  +Y ++G   EA   I+ M       
Sbjct: 298 VFGKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIG-KGLL 356

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+ +TY+ ++ +     + D    +   M   G      TYN ++   GK  +F  M   
Sbjct: 357 PNTFTYNTIMTAYGNAGKVDEALALFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEM 416

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M  S GC P+  T N++++  G  G    + +         V+    T N L  +YG
Sbjct: 417 LGEMSRS-GCTPNRVTWNTLLAVCGKRGMESYVTRVLEGMKSCKVELCRDTYNTLICAYG 475

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G       + D M    F P + TYN ++    + G          KMK  G KPN +
Sbjct: 476 RCGSRANAFKMYDEMTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDM 535

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y  L+  ++K G    +++I ++V   ++         ++ A  +   +E +   F  +
Sbjct: 536 SYSLLLQCHAKGGNAAGIEAIEKEVYQGNIFPSWVILRTLVIANFKCRRLEGIERAFQEV 595

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           K R   PD +   +M+  Y   G+   A  +
Sbjct: 596 KARGHKPDLVILNSMLSIYAKNGLYSKAMEM 626



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/329 (19%), Positives = 149/329 (45%), Gaps = 11/329 (3%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D Y  L+ AYG+ G    AF   ++M + +   P + TY+ L+   ++   +     I++
Sbjct: 465 DTYNTLICAYGRCGSRANAFKMYDEM-TAAGFAPCLTTYNALLNVLSRQGDWTAARSIVS 523

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M   G + + ++Y+ ++  + K      +E+     V  G   P    L +++ A    
Sbjct: 524 KMKSEGFKPNDMSYSLLLQCHAKGGNAAGIEA-IEKEVYQGNIFPSWVILRTLVIANFKC 582

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
             +E +E+ + E    G K D+  LN +   Y + G+Y K   + + +++    P ++TY
Sbjct: 583 RRLEGIERAFQEVKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITY 642

Query: 210 NIVIETFGKAGHIEKMEEYFKKMK---------HRGMKPNSITYCSLVSAYSKAGLIMKV 260
           N +++ + K+    + E+   +++          + +KP+ ++Y ++++ + K GLI + 
Sbjct: 643 NSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEA 702

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +L ++    V      ++ ++  Y       +  E+   M +R   P  +T+  ++ +
Sbjct: 703 QRVLSEMIADGVAPCVITYHTLVGGYASREMFAEAREVVGYMIQRKLKPMELTYRRVVDS 762

Query: 321 YNALGMTEAAQNLENKMIAMKENSGKKLI 349
           Y      E A++    +     NS +KL+
Sbjct: 763 YCRAKRYEDARDFLAVVAEADTNSDEKLL 791


>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 808

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 149/301 (49%), Gaps = 4/301 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+ P +  +  ++SAY       +A S    MK  ++ +PD  T +I+I    K  
Sbjct: 239 MTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKG-TNIRPDTTTRNIVIYCLVKLG 297

Query: 80  RFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           + +    I   M     EC    VT+ +II  Y  + + E  ++ FS M+ + G  P I 
Sbjct: 298 QCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTML-AEGLTPTIV 356

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           + N++I AY   G  E+    + +    G+  D+ +   L  SYGR+    K R + + M
Sbjct: 357 SYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMM 416

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +K    P VV++N +I+ +G  G +    +  ++M+  G+ PN +T C+L++A  + G  
Sbjct: 417 KKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQK 476

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           + +D++L   +   + L+T   N  I +Y   G+ EK   L+ +M++    P+++T+  +
Sbjct: 477 VNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVL 536

Query: 318 I 318
           I
Sbjct: 537 I 537



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 158/330 (47%), Gaps = 5/330 (1%)

Query: 11  EQASLLFEVM-LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           E ++L+F  M L        D+Y  ++  + +  L D+A     +M+    CKPD  TY+
Sbjct: 124 EHSNLVFRWMKLQKNYCARTDMYNMMIRLHARHNLTDQARGLFFEMQEWR-CKPDSETYN 182

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            LI +  +  ++     I+ +M    I  S  TYN +I+  G +  + E       M E+
Sbjct: 183 ALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQMTEN 242

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G  PD+ T N ++SAY       K   ++       ++ D  T NI+     + G  +K
Sbjct: 243 -GVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEK 301

Query: 190 MRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
              + + M+++     P +VT+  +I  +  +G +E  +  F  M   G+ P  ++Y +L
Sbjct: 302 AIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNAL 361

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           + AY+  G+  +  S+ ++++ S ++ D   +  ++S+YG++   +K  E+F  MK+   
Sbjct: 362 IGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKL 421

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKM 337
            P+ ++F  +I AY + G+   A  +  +M
Sbjct: 422 KPNVVSFNALIDAYGSNGLLADAVKVLREM 451



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 150/338 (44%), Gaps = 2/338 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  Q   A  + E ML + + PS   Y  L++A G SG   EA      M   +   PD
Sbjct: 189 GRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQMTE-NGVGPD 247

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + T++I++ +     ++         M    I     T N +I    K  + E+    F+
Sbjct: 248 LVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDIFN 307

Query: 125 AMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           +M E    C PDI T  S+I  Y  SG +E  +  ++     G+   I + N L  +Y  
Sbjct: 308 SMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAF 367

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM ++  SV   ++     P VV+Y  ++ ++G++   +K  E F  MK   +KPN ++
Sbjct: 368 HGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVS 427

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +L+ AY   GL+     +LR++E   +  +      +++A G+ G    +  +    K
Sbjct: 428 FNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAK 487

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            R    + +   + I +Y  +G  E A  L N M  MK
Sbjct: 488 MRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMK 525



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 136/315 (43%), Gaps = 37/315 (11%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E    +F  ML++GL P++  Y AL+ AY   G+ +EA S    +K+ S   PDV   
Sbjct: 335 QVENCKAVFSTMLAEGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKA-SGLLPDV--- 390

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
                                           V+Y +++  YG++K+ ++    F+ M++
Sbjct: 391 --------------------------------VSYTSLLSSYGRSKQPKKAREMFN-MMK 417

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                P++ + N++I AYG++G +    K   E    G+  +I T+  L  + GR G   
Sbjct: 418 KAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKV 477

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
            + +V+   + R      V  N  I ++   G  EK    +  M+   + PNS+TY  L+
Sbjct: 478 NIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVLI 537

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           S   K     K       +    + L     + +I AY + G + +   +F  MK   C 
Sbjct: 538 SGCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMKMAGCC 597

Query: 309 PDNITFATMIQAYNA 323
           PD ITF  M+ AYNA
Sbjct: 598 PDIITFTAMLHAYNA 612



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 2/202 (0%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N MI  +      ++    + E      K D +T N L  ++GRAG +    ++M+ M +
Sbjct: 147 NMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALINAHGRAGQWRWAMNIMEDMLR 206

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P+  TYN +I   G +G+  +  +  K+M   G+ P+ +T+  ++SAY       K
Sbjct: 207 EAIPPSRSTYNNLINACGSSGNWREALKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSK 266

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNITFATM 317
             S    ++ +++  DT   N +I    + G  EK  ++F +M+E+   C PD +TF ++
Sbjct: 267 ALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSI 326

Query: 318 IQAYNALGMTEAAQNLENKMIA 339
           I  Y+  G  E  + + + M+A
Sbjct: 327 IHLYSLSGQVENCKAVFSTMLA 348



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 155/355 (43%), Gaps = 35/355 (9%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+ KQP++A  +F +M    LKP+V  + AL+ AYG +GLL +A   + +M+      P+
Sbjct: 401 GRSKQPKKAREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQ-DGIHPN 459

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + T   L+ +C +  +   I+ +L+     GI+ + V  N+ I  Y    ++E+  + ++
Sbjct: 460 IVTICTLLAACGRCGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYN 519

Query: 125 AMVE--------------SGGCH-----------PDIFTL---------NSMISAYGNSG 150
           +M +              SG C             D+  L         +S+I AY   G
Sbjct: 520 SMRKMKVAPNSVTYTVLISGCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQG 579

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            I + E  +    + G   DI T   +  +Y     + K   ++  M+        +  +
Sbjct: 580 QITEAESIFTMMKMAGCCPDIITFTAMLHAYNAGEHWGKACDLIQEMEDYDIQLDTIACS 639

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            ++  F K G+  ++    + MK + +  +   +  +VSA S       + ++++ +E S
Sbjct: 640 ALMRAFNKRGNPSQVLILAEFMKEKEIPFSDAIFFEMVSACSLLRDWRTILNLMKLMEPS 699

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
             ++     N ++   G++G +E M +LF  +       +  T++ M++   A+G
Sbjct: 700 FSVVSIGLLNQLLHVLGRSGKIESMMKLFYKITASGAEINFNTYSIMLKNLLAVG 754



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 103/255 (40%), Gaps = 37/255 (14%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  +A   F  M+   +  + +V ++++ AY + G + EA S    MK ++ C 
Sbjct: 539 GCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMK-MAGCC 597

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK---------- 112
           PD+ T++ ++ +      +     ++ EM    I+   +  + ++  + K          
Sbjct: 598 PDIITFTAMLHAYNAGEHWGKACDLIQEMEDYDIQLDTIACSALMRAFNKRGNPSQVLIL 657

Query: 113 AKKFEEMESSFS-----AMVESGGCHPDIFT-------------------LNSMISAYGN 148
           A+  +E E  FS      MV +     D  T                   LN ++   G 
Sbjct: 658 AEFMKEKEIPFSDAIFFEMVSACSLLRDWRTILNLMKLMEPSFSVVSIGLLNQLLHVLGR 717

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           SG IE M K + +    G + +  T +I+ K+    G + K   V+++M+     P++  
Sbjct: 718 SGKIESMMKLFYKITASGAEINFNTYSIMLKNLLAVGNWRKYIEVLEWMEDAGIQPSIGM 777

Query: 209 YNIVIETFGKAGHIE 223
           Y  +     K G  E
Sbjct: 778 YYDISSYVQKGGGAE 792


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 169/338 (50%), Gaps = 15/338 (4%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK-- 73
           +++ M+   ++P++  +   ++   ++G L++A   I D+K+     P++ TY+ LI   
Sbjct: 187 VYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWG-FSPNIVTYNTLIDGH 245

Query: 74  ----SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
               S  K +R D    IL EM    I  + +T+NT+IDG+ K +     +++F  M + 
Sbjct: 246 CKKGSAGKMYRAD---AILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEM-QR 301

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G  P+I T NS+I+   N+G +++    +++   +G+K +I T N L   + +  M  +
Sbjct: 302 QGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKE 361

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
            R + D + ++   P  +T+N +I+ F KAG +E+       M   G+ PN  TY  L++
Sbjct: 362 ARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIA 421

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
              +   +     +L ++EN ++  D   +N +I  + + G+  K  +L   M      P
Sbjct: 422 GLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKP 481

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
           +++T+ T++  Y   G  +AA  +  +M    E  GK+
Sbjct: 482 NHVTYNTLMDGYCMEGNLKAALKVRTQM----EKEGKR 515



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 134/298 (44%), Gaps = 37/298 (12%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           FE M   GLKP++  Y +L++    +G LDEA +  + M  +   KP++ T++ LI    
Sbjct: 296 FEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLG-LKPNIVTFNALINGFC 354

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K        K+  +++   +  +A+T+NT+ID + KA   EE  +  ++M++ G   P++
Sbjct: 355 KKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEG-IFPNV 413

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            T N +I+    + N+   +K  NE     +KAD                          
Sbjct: 414 STYNCLIAGLCRNQNVRAAKKLLNEMENYELKAD-------------------------- 447

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
                    VVTYNI+I  + K G   K E+   +M + G+KPN +TY +L+  Y   G 
Sbjct: 448 ---------VVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGN 498

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           +     +  Q+E      +   +N +I  + + G +E    L   M E+   P+  T+
Sbjct: 499 LKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTY 556



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 152/340 (44%), Gaps = 19/340 (5%)

Query: 9   QPEQASLLFEVMLSDGLKPSVD--VYTALVSAYGQSGLLD---EAFSTINDMK---SVSD 60
           +    S +F  +L  G +P  +  +   LV AY  +  +    E F  + D     S++ 
Sbjct: 108 EKHTVSSVFHSLLLGGDRPCANALITDMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNS 167

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P       L+ +  K +    ++ +  EM    I+ +  T+N  I+G  KA K  + E
Sbjct: 168 CNP-------LLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAE 220

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAY---GNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
                 +++ G  P+I T N++I  +   G++G + + +    E     +  +  T N L
Sbjct: 221 DVIED-IKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTL 279

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              + +       ++  + MQ++   P +VTYN +I      G +++    + KM   G+
Sbjct: 280 IDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGL 339

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           KPN +T+ +L++ + K  +I +   +   +   D++ +   FN +I A+ +AG +E+   
Sbjct: 340 KPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFA 399

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           L  +M +    P+  T+  +I          AA+ L N+M
Sbjct: 400 LHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEM 439



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 3/178 (1%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G K  + + N L  +  +     +M+ V   M KR   P + T+NI I    KAG + K 
Sbjct: 160 GFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKA 219

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSK---AGLIMKVDSILRQVENSDVILDTPFFNCI 282
           E+  + +K  G  PN +TY +L+  + K   AG + + D+IL+++  + +  +   FN +
Sbjct: 220 EDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTL 279

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           I  + +  +V      F  M+ +   P+ +T+ ++I   +  G  + A  L +KM+ +
Sbjct: 280 IDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGL 337


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 4/311 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C   Q +QAS+LF+ ML   +KP V  ++ LV A  + G++ EA S    M  ++
Sbjct: 285 LIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIA 344

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +PD+ TYS LI    K   +     +L EM    I    VT++  +D + K     E 
Sbjct: 345 -MEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEA 403

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +S  + M+E G   P++ T NS++  Y     +++  K ++     G   D+ + NIL K
Sbjct: 404 QSIINLMIERG-LRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIK 462

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y ++   D+ + + D M  +   P  +T+  +I    +AG     +E FKKM   G  P
Sbjct: 463 GYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPP 522

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + ITY +L+S + K G + +  ++   ++ S +  +      ++    +AG +E   ELF
Sbjct: 523 DLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELF 582

Query: 300 LTMKERHCVPD 310
            ++      PD
Sbjct: 583 SSLSIEELQPD 593



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 160/330 (48%), Gaps = 2/330 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +   +A  LF  M S G+ P+V  Y +L+     SG   +A     +M    + KP
Sbjct: 254 LCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLE-WNMKP 312

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T+SIL+ +  K         +  +M  + +E   VTY+++I G  K+  ++E  +  
Sbjct: 313 DVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLL 372

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M+ S    PD+ T +  +  +   G + + +   N     G++ ++ T N L   Y  
Sbjct: 373 NEML-SRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCL 431

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               D+ R V D M  +   P V++YNI+I+ + K+  I++ ++ F +M H+G+ PNSIT
Sbjct: 432 HSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSIT 491

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +L+S   +AG       + +++ +     D   ++ ++S + + G +++   LF  +K
Sbjct: 492 HTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALK 551

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +    P+++    ++      G  E A+ L
Sbjct: 552 KSQLKPNHVICKILLGGMCKAGKLEDAKEL 581



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 155/321 (48%), Gaps = 2/321 (0%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
            + ++S G +P+V  +T +V+   + G    A   +  M  + DC+P+V +YSI+I S  
Sbjct: 197 LDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVEL-DCEPEVVSYSIIIDSLC 255

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K    +    +   M  +GI  + VTYN++I G   + ++++    F  M+E     PD+
Sbjct: 256 KNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLE-WNMKPDV 314

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            T + ++ A    G + +    + +   + ++ DI T + L     ++ ++ +  ++++ 
Sbjct: 315 VTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNE 374

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M  R   P VVT++I ++ F K G + + +     M  RG++PN +TY SL+  Y     
Sbjct: 375 MLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQ 434

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + +   +   + N     D   +N +I  Y ++  +++  +LF  M  +   P++IT  T
Sbjct: 435 MDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTT 494

Query: 317 MIQAYNALGMTEAAQNLENKM 337
           +I      G   AA+ L  KM
Sbjct: 495 LISGLCQAGRPYAAKELFKKM 515



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 141/314 (44%), Gaps = 6/314 (1%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTKFHRFDLIE 85
           P +  +  L++A  +    D   S    M+     C   VYT +ILI      H   L  
Sbjct: 102 PCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSC--SVYTLTILINCLCHLHLVGLGF 159

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYG-KAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            +L ++  LG + S +T+NT+I+G   + +  E ME     M  S G  P ++T   +++
Sbjct: 160 SVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIM--SRGYQPTVYTHTMIVN 217

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
                G       W  +   +  + ++ + +I+  S  +  + ++   +   M+     P
Sbjct: 218 GLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISP 277

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           TVVTYN +I     +G  ++    FK+M    MKP+ +T+  LV A  K G++++  S+ 
Sbjct: 278 TVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVF 337

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++    +  D   ++ +I    ++   ++   L   M  R+  PD +TF+  +  +   
Sbjct: 338 GKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKK 397

Query: 325 GMTEAAQNLENKMI 338
           GM   AQ++ N MI
Sbjct: 398 GMVSEAQSIINLMI 411



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 132/315 (41%), Gaps = 37/315 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G KPS+  +  L++     G + EA   ++ + S    +P VYT+++++    K  +   
Sbjct: 169 GFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMS-RGYQPTVYTHTMIVNGLCKIGKTSA 227

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
               + +M  L  E   V+Y+ IID   K +   E    F  M  S G  P + T NS+I
Sbjct: 228 AIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHM-RSIGISPTVVTYNSLI 286

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
               NSG  ++    + E     +K                                   
Sbjct: 287 YGMCNSGQWKQASILFKEMLEWNMK----------------------------------- 311

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVT++I+++   K G + +    F KM    M+P+ +TY SL+    K+ L  +  ++
Sbjct: 312 PDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTL 371

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L ++ + ++  D   F+  +  + + G V +   +   M ER   P+ +T+ +++  Y  
Sbjct: 372 LNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCL 431

Query: 324 LGMTEAAQNLENKMI 338
               + A+ + + M+
Sbjct: 432 HSQMDEARKVFDIMV 446



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 133/300 (44%), Gaps = 12/300 (4%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
            D+A +  N M  ++   P +  ++ L+ +  +   +D +  I  +M + G+ CS  T  
Sbjct: 85  FDDALAYFNQMVHMNP-FPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLT 143

Query: 105 TIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
            +I+          +   FS +  +   G  P I T N++I+     G I +  +  +  
Sbjct: 144 ILINCLCH---LHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYI 200

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF---PTVVTYNIVIETFGKA 219
              G +  + T  ++     + G   K  + + +M+K       P VV+Y+I+I++  K 
Sbjct: 201 MSRGYQPTVYTHTMIVNGLCKIG---KTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKN 257

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
             + +  + F  M+  G+ P  +TY SL+     +G   +   + +++   ++  D   F
Sbjct: 258 RLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTF 317

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           + ++ A  + G V +   +F  M +    PD +T++++I       + + +  L N+M++
Sbjct: 318 SILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLS 377


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 167/375 (44%), Gaps = 43/375 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F  M   G KP+   +  L+  YG +G+ +E    ++ M    + KP+  T++ 
Sbjct: 158 KEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNS 217

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT------------------------- 105
           LI++     R      ++ +M+  G++   VTYNT                         
Sbjct: 218 LIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNR 277

Query: 106 ----------IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
                     II+GY K  K ++    F   + + G HP++   NS+I  + +  + + +
Sbjct: 278 VMPNERTCGIIINGYCKEGKMKDA-LRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGV 336

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           ++        GVK D+ T + +  ++   G+ DK + + D M K    P +  ++I+ + 
Sbjct: 337 DEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKG 396

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           + +AG  EK E     M   G++PN + + +++S +  AG +     +  ++    +  +
Sbjct: 397 YVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPN 456

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              F  +I  YG+A + +K  EL   M+++   P   T   +  A++ALG+   A+ ++N
Sbjct: 457 LKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAPVKSTIQLVADAWHALGLANEAKRIKN 516

Query: 336 K-------MIAMKEN 343
                   MI+ KE+
Sbjct: 517 DVEEAPKVMISTKED 531



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 154/331 (46%), Gaps = 5/331 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P++A L+F  +  +G +P++  YT L++A  +        S I+ ++  +  KPD   +
Sbjct: 86  KPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEK-NGLKPDSVFF 144

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I + ++        KI  +M   G + +  T+NT+I GYG A   EE       M +
Sbjct: 145 NAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQ 204

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNILTKSYGRAGM 186
                P+  T NS+I A+ N   I   E W   + +   G++ D+ T N L ++Y + G 
Sbjct: 205 EENVKPNDRTFNSLIRAWCNKKRI--TEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGE 262

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
             +   ++  MQ     P   T  I+I  + K G ++    +  +M++ G+ PN + + S
Sbjct: 263 TSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNS 322

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+  +        VD  L  +E   V  D   F+ I++A+   G ++K  E+F  M +  
Sbjct: 323 LIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAG 382

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             PD   F+ + + Y   G  E A++L   M
Sbjct: 383 IEPDIHAFSILAKGYVRAGEPEKAESLLTAM 413



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 152/329 (46%), Gaps = 9/329 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L   +  +GLKP    + A+++A+ +SG + EA      MK    CKP   T++ LIK  
Sbjct: 128 LISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKD-RGCKPTTSTFNTLIKGY 186

Query: 76  TKFHRFDLIEKILAEMSY-LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
                 +   K+L  MS    ++ +  T+N++I  +   K+  E  +    M  S G  P
Sbjct: 187 GNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAAS-GLQP 245

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D+ T N++  AY  +G   + E    E     V  + +T  I+   Y + G   KM+  +
Sbjct: 246 DVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEG---KMKDAL 302

Query: 195 DF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            F   M+     P +V +N +I+ F      + ++E    M+  G+KP+ +T+ ++++A+
Sbjct: 303 RFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAW 362

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           S  GL+ K   I   +  + +  D   F+ +   Y +AG+ EK   L   M +    P+ 
Sbjct: 363 SSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNV 422

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAM 340
           + F T+I  + + G  E A  +  KM  M
Sbjct: 423 VIFTTIISGWCSAGKMEYASRVYEKMCEM 451



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 77/134 (57%), Gaps = 5/134 (3%)

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           NI+IE     G  ++ +  F  +   G +P  ITY +L++A ++      + S++ ++E 
Sbjct: 79  NILIE----KGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEK 134

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
           + +  D+ FFN +I+A+ ++G+V++  ++F  MK+R C P   TF T+I+ Y   GM E 
Sbjct: 135 NGLKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEE 194

Query: 330 AQNLENKMIAMKEN 343
              L + +++ +EN
Sbjct: 195 CLKLLD-LMSQEEN 207



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 5/187 (2%)

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G  ++ +  +N     G +  + T   L  +  R   +  + S++  ++K    P  V +
Sbjct: 85  GKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFF 144

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL---IMKVDSILRQ 266
           N +I  F ++G++++  + F+KMK RG KP + T+ +L+  Y  AG+    +K+  ++ Q
Sbjct: 145 NAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQ 204

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
            EN  V  +   FN +I A+     + +   +   M      PD +T+ T+ +AY   G 
Sbjct: 205 EEN--VKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGE 262

Query: 327 TEAAQNL 333
           T  A+ +
Sbjct: 263 TSRAEGM 269


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 158/334 (47%), Gaps = 2/334 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF+ ++S GL+P +  Y A++    + G+ D A   +  + S   C PDV +Y+IL
Sbjct: 219 EALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHL-SARGCNPDVVSYNIL 277

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           ++S     R++  E+++ +M   G E + VT++ +I  + +  +  E  +    M E G 
Sbjct: 278 LRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKG- 336

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD ++ + +ISA+   G ++   ++  +    G   DI   N +  +  + G  D   
Sbjct: 337 LTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLAL 396

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V + + +    PTV  YN +       G+  K  E   +M  +G+ P+ ITY SL+S  
Sbjct: 397 DVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCL 456

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + GL+ +   +L  +E +        FN ++    +A  V +  EL +TM E+ C+P+ 
Sbjct: 457 CRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNE 516

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            ++  +I+     G    A  L N +  +   SG
Sbjct: 517 TSYVLLIEGIAYAGWRAEAMELANSLYRLGVISG 550



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 153/323 (47%), Gaps = 7/323 (2%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
            E ++S G KP V + T L+  +  S  L +A   +  +++  D  PDVY+Y+ +I   +
Sbjct: 85  LESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGD--PDVYSYNAMISGFS 142

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHP 134
           K ++ D   ++   M   G     VTYN +I       K   +E +F  M E    GC P
Sbjct: 143 KANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGK---LELAFEVMDELLKDGCKP 199

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
            + T   +I A    G I +  + ++E    G++ D+ T N + +   + GM D+    +
Sbjct: 200 SVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFV 259

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             +  R   P VV+YNI++ +F      E  E   K M   G +PN +T+  L+S++ + 
Sbjct: 260 RHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCRE 319

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G + +  ++L  ++   +  D+  ++ +ISA+ + G ++   E    M    C+PD + +
Sbjct: 320 GRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNY 379

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
            T++      G  + A ++  K+
Sbjct: 380 NTILATLCKFGCADLALDVFEKL 402



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 147/312 (47%), Gaps = 2/312 (0%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P V  Y A++S + ++  +D A    + M+S     PDV TY+I+I S     + +L  +
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRS-RGFSPDVVTYNIMIGSLCSRGKLELAFE 187

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           ++ E+   G + S +TY  +I+      +  E    F  +V S G  PD++T N++I   
Sbjct: 188 VMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELV-SRGLRPDLYTYNAIIRGI 246

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G  ++   +    +  G   D+ + NIL +S+     ++    +M  M      P V
Sbjct: 247 CKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNV 306

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VT++I+I +F + G + +     + MK +G+ P+S +Y  L+SA+ K G +      L +
Sbjct: 307 VTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEK 366

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + +   + D   +N I++   + G  +   ++F  + E  C P    + TM  A  + G 
Sbjct: 367 MVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGN 426

Query: 327 TEAAQNLENKMI 338
              A  + ++MI
Sbjct: 427 KIKALEMISEMI 438



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 113/245 (46%), Gaps = 2/245 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E    L + M+  G +P+V  ++ L+S++ + G + EA + +  MK      PD Y+Y  
Sbjct: 288 EDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKE-KGLTPDSYSYDP 346

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI +  K  R DL  + L +M   G     V YNTI+    K    +     F  + E G
Sbjct: 347 LISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVG 406

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P +   N+M SA  + GN  K  +  +E    G+  D  T N L     R G+ D+ 
Sbjct: 407 -CPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEA 465

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M+   F PTV+++NIV+    KA  + +  E    M  +G  PN  +Y  L+  
Sbjct: 466 IGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEG 525

Query: 251 YSKAG 255
            + AG
Sbjct: 526 IAYAG 530


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 153/337 (45%), Gaps = 1/337 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + M  K  + E A  L E M   G  P+V  YT L+   G+ G +D+A+S   +M     
Sbjct: 272 LAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLK-DG 330

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDV   + LI    +  R +   K+  +M  L    + VTYNT+I    ++K      
Sbjct: 331 CKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEA 390

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           + +   +++ G  P  FT   +I  +  +  +EK      E +  G          L  S
Sbjct: 391 ALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDS 450

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            GRA  Y+    +   +++     +   Y ++I+ FG  G +    + F +MK  G  P+
Sbjct: 451 LGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPD 510

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY +L+S   +AG+I +  S++R +  +    D    N I++   + G  ++  E+F 
Sbjct: 511 VYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFT 570

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            MKE   +PD +++ T++   +  GM E A  L  +M
Sbjct: 571 KMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREM 607



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 144/334 (43%), Gaps = 6/334 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK K   +A  +F  +      P+  VY  L+      G  ++     N++ S  +C 
Sbjct: 168 ILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCS 227

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TYS LI +  K  R+D   ++  EM   G+  +   Y TI+  Y K  K E     
Sbjct: 228 PDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRL 287

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNILTKS 180
              M +  GC P +FT   +I   G  G ++     +  FN++  G K D+  +N L   
Sbjct: 288 VEEM-KGKGCAPTVFTYTELIKGLGKVGRVDDAYSLF--FNMLKDGCKPDVVLINNLINI 344

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKP 239
            GRAG  +    +   M      P VVTYN VI+  F       +   +F+KMK  G+ P
Sbjct: 345 LGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAP 404

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +S TY  L+  + K   + K   +L +++          +  +I + G+A   E   ELF
Sbjct: 405 SSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELF 464

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             +KE         +A MI+ +   G    A +L
Sbjct: 465 QELKENCGRSSARVYAVMIKHFGNCGRLSDAVDL 498



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 144/324 (44%), Gaps = 38/324 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + + A  LF  ML DG KP V +   L++  G++G L++A      M S+  C P
Sbjct: 310 LGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQ-CAP 368

Query: 64  DV------------------------------------YTYSILIKSCTKFHRFDLIEKI 87
           +V                                    +TY+ILI    K +R +    +
Sbjct: 369 NVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLL 428

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
           L EM   G       Y ++ID  G+AK++E     F  + E+ G          MI  +G
Sbjct: 429 LEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCG-RSSARVYAVMIKHFG 487

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
           N G +      + E   +G   D+ T N L     RAGM D+  S+M  M++    P + 
Sbjct: 488 NCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIK 547

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           ++NI++    K G  ++  E F KMK   + P++++Y +++S  S+AG+      ++R++
Sbjct: 548 SHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREM 607

Query: 268 ENSDVILDTPFFNCIISAYGQAGD 291
           +      D+  ++ I+ A G+  +
Sbjct: 608 KLKGFEYDSITYSSILEAVGKVDE 631



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 119/293 (40%), Gaps = 42/293 (14%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
            Y AL+    +SGL+DE + TI DM                I+S                
Sbjct: 126 TYMALIRCLEESGLVDEMWRTIQDM----------------IRS---------------- 153

Query: 91  MSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
                  CS     ++ I+   GKAK   +  S F   ++   C+P     N++I    +
Sbjct: 154 ------PCSVGPAEWSEILKILGKAKMVNKALSVFY-QIKGRKCNPTATVYNTLILMLMH 206

Query: 149 SGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            G+ EK+ + YNE    G    D  T + L  ++G+   YD    + D M++    PT  
Sbjct: 207 EGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEK 266

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            Y  ++  + K   +E      ++MK +G  P   TY  L+    K G +    S+   +
Sbjct: 267 IYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNM 326

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
                  D    N +I+  G+AG +E   +LF  M    C P+ +T+ T+I+A
Sbjct: 327 LKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKA 379



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 4/147 (2%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +++ F     TY  +I    ++G +++M    + M           +  ++    KA ++
Sbjct: 116 KRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMV 175

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERHCVPDNITFAT 316
            K  S+  Q++          +N +I      G  EK+ EL+  +  E +C PD IT++ 
Sbjct: 176 NKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSA 235

Query: 317 MIQAYNALGMTEAAQNLENKMIAMKEN 343
           +I A+  L   + A  L ++   MKEN
Sbjct: 236 LISAFGKLERYDFAFRLFDE---MKEN 259


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 183/419 (43%), Gaps = 74/419 (17%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +  +  Q +QA  LF  M     KP  D+Y +L+ A+ ++G    A + + DM   +   
Sbjct: 20  LYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAA-IP 78

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG------YGKA-KK 115
           P   TY+ +I +C     +    ++  +M+  G+    VT+N ++        Y KA   
Sbjct: 79  PTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISY 138

Query: 116 FEEMESS----------------------------FSAMVE-SGGCHPDIFTLNSMISAY 146
           FE M+ +                            F++M E    C PD+ T  S++ +Y
Sbjct: 139 FEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSY 198

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G +E  +  ++     GVK +I   N L  +Y   GM+ +  ++ + ++K    P +
Sbjct: 199 CIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDI 258

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL---------- 256
           V+Y  ++  +G++   EK  E F KMK    KPN ++Y +L+ AY  AG+          
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHE 318

Query: 257 -------------------------IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
                                    I ++++IL    +  + L+T  +N  I +Y   GD
Sbjct: 319 MEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGD 378

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLENKMIAMKENSGKKLI 349
            EK  EL+ +M+E +  PD +T+  +I   + LG  TE+ +  E+ M+  K +S K+ +
Sbjct: 379 YEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFED-MVDSKVSSTKEFL 436



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 152/310 (49%), Gaps = 4/310 (1%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D+Y  ++  Y +   +D+A     +M+    CKPD   Y+ LI + ++  ++     I+ 
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWR-CKPDADIYNSLIHAHSRAGQWRWAINIME 70

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M    I  +  TYN +I+  G A  +++       M E+ G  PD+ T N ++SA  N 
Sbjct: 71  DMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTEN-GVGPDLVTHNIVLSALKNG 129

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVV 207
               K   ++       V +D  TLNI+     + G   +   + + M++R     P VV
Sbjct: 130 AQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVV 189

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  ++ ++   G +E  +  F  M   G+KPN + Y SL+ AY+  G+  +  +I   +
Sbjct: 190 TYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLI 249

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           + + +  D   +  +++AYG++   EK  E+F  MK+  C P+ +++  +I AY + GM 
Sbjct: 250 KKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGML 309

Query: 328 EAAQNLENKM 337
           + A  L ++M
Sbjct: 310 KEAVGLLHEM 319



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 126/279 (45%), Gaps = 13/279 (4%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  QPE+A  +F  M  +  KP+   Y AL+ AYG +G+L EA   +++M+     +PD
Sbjct: 269 GRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEK-DGIQPD 327

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V + S L+ +C +  +   IE IL      GI+ + V YN+ I  Y     +E+    ++
Sbjct: 328 VVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYT 387

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF---NLMGVKADIQTLNILTKSY 181
           +M ES    PD  T N +IS     G   +  +++ +     +   K  + T+  L +S 
Sbjct: 388 SMRES-NVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEFLWTIRWLEESL 446

Query: 182 G---RAGM-----YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           G   R G      +     +++++       +V T N V+   GK G  E M + F KM 
Sbjct: 447 GPVQRDGSKWIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMV 506

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
                    TY  ++      G   K   +L+ +E+S V
Sbjct: 507 TSCSTVGLSTYAVVLRNLLVVGKWRKYIEVLQWMEDSGV 545



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+ +  MI  Y     +++    + E      K D    N L  ++ RAG +    ++M
Sbjct: 12  DIYGM--MIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIM 69

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + M +    PT  TYN VI   G AG+ +K  E  KKM   G+ P+ +T+  ++SA    
Sbjct: 70  EDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNG 129

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 312
               K  S    ++ ++V  DT   N II    + G   +  ELF +M+ER   C PD +
Sbjct: 130 AQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVV 189

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           T+ +++ +Y   G  E  + + + M+A
Sbjct: 190 TYTSIMHSYCIYGQVENCKAIFDLMVA 216


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 147/296 (49%), Gaps = 4/296 (1%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLIE 85
           +V V+ A++  Y +SG  D+A   ++ M+   D +PD+ +++ LI +  K       +  
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDAMRD-QDIEPDLVSFNTLINARAKSGCLAAGVAL 278

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           ++L E+   G+   A+TYNT+I    +    ++  + F  M+ S  C PD++T N+M+S 
Sbjct: 279 ELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASE-CRPDLWTYNAMVSV 337

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           +G  G  ++ E  + E    G + D  T N L  ++ + G  +++  V + + K  F   
Sbjct: 338 HGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 397

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
            +TYN +I  +GK G ++     + +M+  G  P+++TY  LV +  K   I +   +L 
Sbjct: 398 GITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLE 457

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           ++ ++ +      F+ +I AY ++G  +     F  M E    PD + +  M+  +
Sbjct: 458 EMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 513



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 152/314 (48%), Gaps = 8/314 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE--AFSTINDMKSVSDCKPDVYTY 68
           + A  L + M    ++P +  +  L++A  +SG L    A   +++++     +PD  TY
Sbjct: 238 DDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAG-LRPDAITY 296

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSFSAM 126
           + LI +C++    D    +  EM  +  EC     TYN ++  +G+  K +E E  F  +
Sbjct: 297 NTLISACSQGSNLDDAVAVFEEM--IASECRPDLWTYNAMVSVHGRCGKAQEAELMFKEL 354

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           VE G   PD  T NS++ A+   G++E++E+   E    G + D  T N +   YG+ G 
Sbjct: 355 VEKG-FQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGR 413

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D    + D M+     P  VTY +++++ GK   I +  +  ++M   G+KP  +T+ +
Sbjct: 414 LDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSA 473

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+ AY+K+G     +    ++  S V  D   +  ++  + ++ +  K+  L+  M +  
Sbjct: 474 LICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDG 533

Query: 307 CVPDNITFATMIQA 320
             PD+  +  ++ A
Sbjct: 534 YKPDDGLYQVLLAA 547



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 166/371 (44%), Gaps = 40/371 (10%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK- 73
           LL EV  + GL+P    Y  L+SA  Q   LD+A +   +M + S+C+PD++TY+ ++  
Sbjct: 280 LLHEVRQA-GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIA-SECRPDLWTYNAMVSV 337

Query: 74  --SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
              C K    +L+ K L E    G +  AVTYN+++  + K    E +E     +V++G 
Sbjct: 338 HGRCGKAQEAELMFKELVEK---GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAG- 393

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              D  T N+MI  YG  G ++     Y+E   +G   D  T  +L  S G+     +  
Sbjct: 394 FRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAG 453

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V++ M      PT+VT++ +I  + K+G  +  E  F +M   G+KP+ + Y  ++  +
Sbjct: 454 KVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 513

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-------GDVEKMGELF----- 299
           +++    K+  + R +       D   +  +++A  +        G ++ M  +F     
Sbjct: 514 ARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPL 573

Query: 300 ---------------LTMKERHCV----PDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
                           ++ +R C+    PD  +  +++ AY  +G  E   +L   +   
Sbjct: 574 VISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQH 633

Query: 341 KENSGKKLIQC 351
             NS   + +C
Sbjct: 634 VPNSHNLISEC 644



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 147/311 (47%), Gaps = 2/311 (0%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E A  +F++M+  G  P+V+    ++ A    G LDE +  + +++ + D K    T  +
Sbjct: 799  EHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDL-DIKISKSTVLL 857

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            ++++  K      + KI   M   G   +   Y  +I      K+F ++E   + M E  
Sbjct: 858  MLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEM-EGA 916

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            G  PD+  LN+++  Y  +GN ++  + Y+     G++ D  T N L   Y R    ++ 
Sbjct: 917  GFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEG 976

Query: 191  RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++  M KR   P + +Y I++   GKA   E+ +  F++M+ +G + N   Y  ++  
Sbjct: 977  FTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKI 1036

Query: 251  YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            Y  A    K + +L  ++   +       + ++++YG +G  ++  ++  ++K  +    
Sbjct: 1037 YRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEIS 1096

Query: 311  NITFATMIQAY 321
             + ++T++ AY
Sbjct: 1097 TLPYSTVLDAY 1107



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 133/307 (43%), Gaps = 2/307 (0%)

Query: 31   VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
            ++ AL+ AY +SGL + A   I D+       P V + + ++++     R D +  ++ E
Sbjct: 784  IWNALIHAYAESGLYEHA-RAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQE 842

Query: 91   MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
            +  L I+ S  T   +++ + KA    E+   ++ M ++ G  P++     MIS   ++ 
Sbjct: 843  LQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGM-KAAGYLPNMHLYRIMISLLCHNK 901

Query: 151  NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
                +E    E    G K D+  LN L   Y   G +D+   V   + +    P   TYN
Sbjct: 902  RFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYN 961

Query: 211  IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
             +I  + +    E+      +M  RG+ P   +Y  L++A  KA L  + D +  ++   
Sbjct: 962  TLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTK 1021

Query: 271  DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
               L+   ++ ++  Y  A +  K   L   MKE    P   T   ++ +Y   G  + A
Sbjct: 1022 GYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEA 1081

Query: 331  QNLENKM 337
            + + N +
Sbjct: 1082 EKVLNSL 1088



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 126/306 (41%), Gaps = 56/306 (18%)

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           DC  D+Y Y  LI    +   F    ++  +M +LGI  S   + + I    +  +    
Sbjct: 676 DC--DLYEY--LITYLEEAELFPEACQVFCDMQFLGIVPSQKVFPSFI---FQCCRLGFP 728

Query: 120 ESSFSAMVESGGCHPDIFTLN---SMISAYGNSGNIEKMEKWYNEFNLM-GVK----ADI 171
           E+++  M ++      +  L+   +MI AYG      K++ W    N + G+K     D 
Sbjct: 729 ETAYQLMDDAARSDISLNILSCRVAMIEAYG------KLKLWQQAENFVKGLKQESGVDR 782

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN--------------------- 210
           +  N L  +Y  +G+Y+  R++ D M K+   PTV + N                     
Sbjct: 783 RIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQE 842

Query: 211 --------------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
                         +++E F KAG + ++ + +  MK  G  PN   Y  ++S       
Sbjct: 843 LQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKR 902

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
              V+ ++ ++E +    D    N ++  Y   G+ ++  E++ ++ E    PD  T+ T
Sbjct: 903 FRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNT 962

Query: 317 MIQAYN 322
           +I  Y+
Sbjct: 963 LIVMYS 968



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 150/385 (38%), Gaps = 68/385 (17%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  +  +A  + E M   GLKP++  ++AL+ AY +SG  D+A  T + M   S  KP
Sbjct: 443 LGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVE-SGVKP 501

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILA---EMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           D   Y +++     F R D   K++     M   G +     Y  ++    K  + +E+E
Sbjct: 502 DRLAYLVMLDV---FARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIE 558

Query: 121 SSFSAM--------------------VESG----------GCHPDIFTLNSMISAYGNSG 150
                M                    +  G          G  PD  +L S++ AY   G
Sbjct: 559 GVIQDMEAVFEMNPLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMG 618

Query: 151 NIEK---MEKWY-----NEFNLMGVKADIQTL----NIL--TKSYGRAGMYDKMRSVMDF 196
             EK   + +W      N  NL+  +  I  L     I+   + Y R  M  +      F
Sbjct: 619 KHEKGLSLLEWIRQHVPNSHNLIS-ECSIMLLCKNGKIVDAIQEYSRKQMLKR----GSF 673

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
            Q    +  ++TY    E F +A  +      F  M+  G+ P+   + S +    + G 
Sbjct: 674 GQDCDLYEYLITYLEEAELFPEACQV------FCDMQFLGIVPSQKVFPSFIFQCCRLGF 727

Query: 257 IMKVDSILRQVENSDVILDTPFFNC---IISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
                 ++     SD+ L+    +C   +I AYG+    ++       +K+   V D   
Sbjct: 728 PETAYQLMDDAARSDISLN--ILSCRVAMIEAYGKLKLWQQAENFVKGLKQESGV-DRRI 784

Query: 314 FATMIQAYNALGMTEAAQNLENKMI 338
           +  +I AY   G+ E A+ + + MI
Sbjct: 785 WNALIHAYAESGLYEHARAIFDIMI 809



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 2/141 (1%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            GK K  EQA LLFE M + G + +  +Y  ++  Y  +    +A   ++ MK     +P 
Sbjct: 1003 GKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKE-DGIEPT 1061

Query: 65   VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            + T  IL+ S       D  EK+L  +    +E S + Y+T++D Y + + +    +   
Sbjct: 1062 IATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLL 1121

Query: 125  AMVESGGCHPDIFTLNSMISA 145
             M +  G  PD     S I A
Sbjct: 1122 EM-KRDGVEPDHQVWTSFIRA 1141


>gi|410110101|gb|AFV61130.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           viburnoides]
          Length = 337

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 140/284 (49%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T+
Sbjct: 5   KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTL 63

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 64  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S   +D   F  +I AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAY 242

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 243 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 282



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 126/251 (50%), Gaps = 1/251 (0%)

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           I + +   G     V YN +I+ +GKAK F E  S    M ++ G  P+  + +++++ Y
Sbjct: 9   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEM-KAAGVMPNTASYSTLLTMY 67

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +    +    ++E   +    D+ T NI+   YG+ GM  +   +   M+K    P V
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K ++++++
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 187

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+
Sbjct: 188 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGL 247

Query: 327 TEAAQNLENKM 337
              A+ L +++
Sbjct: 248 VAHAKRLLHEL 258



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 144/334 (43%), Gaps = 39/334 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+   
Sbjct: 9   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA-AGVMPNTASYSTLLTMY 67

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 68  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 126

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 127 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 183

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 184 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYE 243

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 244 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 303

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
           +I    +      + E+F  M+     PD+   A
Sbjct: 304 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIA 337



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 105/217 (48%), Gaps = 1/217 (0%)

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S FS +  SG   PD+   N+MI+ +G +    +      E    GV  +  + + L   
Sbjct: 8   SIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTM 66

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y     + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN
Sbjct: 67  YVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPN 126

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ++Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L  
Sbjct: 127 VVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQ 186

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M+ R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 187 EMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 223



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 70/135 (51%)

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYST 62

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++ Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 63  LLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 307 CVPDNITFATMIQAY 321
             P+ +++ T+++ Y
Sbjct: 123 IEPNVVSYNTLLRVY 137



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 2/158 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 103 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 161

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K +     F 
Sbjct: 162 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 221

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
            +  S G   D     +MI AY  +G +   ++  +E 
Sbjct: 222 KL-RSSGXEIDQILFQTMIVAYERAGLVAHAKRLLHEL 258


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 151/318 (47%), Gaps = 2/318 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M+  G +P V  Y+ +++   + G    A   +  M+    CKP+V  YS +I S 
Sbjct: 69  LFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEE-KGCKPNVVVYSTIIDSL 127

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K        + L+EM   GI  + VTY++I+ G+    +  E  S F  MVE     PD
Sbjct: 128 CKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERN-VMPD 186

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T N ++      G I + +  +      GV+ ++ T N L   Y      D+ + + +
Sbjct: 187 TVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFN 246

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M ++   P+V +YNI+I+   K+G I++ +    +M H+ + P+++TY +L+  + + G
Sbjct: 247 IMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDG 306

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
                  +L ++ +  ++ D   ++ ++    + G +++  EL   M+E    P+   + 
Sbjct: 307 RPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYT 366

Query: 316 TMIQAYNALGMTEAAQNL 333
            +IQ     G  EAA+ L
Sbjct: 367 ILIQGMCNFGKLEAAREL 384



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 148/320 (46%), Gaps = 2/320 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M++ G+ P+V  Y++++  +   G  +EA S    M    +  PD  T++IL+   +K  
Sbjct: 143 MVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVE-RNVMPDTVTFNILVDGLSKEG 201

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
                + +   M   G+E +  TYN ++DGY    + +E +  F+ MV  G C P + + 
Sbjct: 202 MILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKG-CAPSVRSY 260

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N +I  +  SG I++ +    E +   +  D  T + L K + + G     + +++ M+ 
Sbjct: 261 NILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRS 320

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P ++TY+IV++   K GH+++  E  K M+   ++PN   Y  L+      G +  
Sbjct: 321 YGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEA 380

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +   +    +  D   +  +IS   + G   +  ELF  M    C+P++ T+  +IQ
Sbjct: 381 ARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQ 440

Query: 320 AYNALGMTEAAQNLENKMIA 339
            +   G T  A  L  +M+ 
Sbjct: 441 GFLRNGDTSNAGRLIEEMVG 460



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 157/335 (46%), Gaps = 4/335 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK      A  L + M   G KP+V VY+ ++ +  +  L+ EA   +++M +     
Sbjct: 91  GLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVN-RGIS 149

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V TYS ++       R +    +  +M    +    VT+N ++DG  K     E +  
Sbjct: 150 PNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCV 209

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M+E G   P++ T N+++  Y +   +++ +K +N     G    +++ NIL K + 
Sbjct: 210 FETMIEKG-VEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHC 268

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G  D+ + ++  M  +   P  VTY+ +++ F + G  +  ++  ++M+  G+ P+ +
Sbjct: 269 KSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLM 328

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  ++    K G + +   +L+ ++ S +  +   +  +I      G +E   ELF  +
Sbjct: 329 TYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNL 388

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   PD +T+  MI      G++  A  L   M
Sbjct: 389 FVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDM 423



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 116/244 (47%), Gaps = 2/244 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +FE M+  G++P+V+ Y AL+  Y     +DEA    N M     C P V +Y+IL
Sbjct: 205 EAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVR-KGCAPSVRSYNIL 263

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           IK   K  R D  + +LAEMS+  +    VTY+T++ G+ +  + ++ +     M  S G
Sbjct: 264 IKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEM-RSYG 322

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+ T + ++      G++++  +         ++ +I    IL +     G  +  R
Sbjct: 323 LLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAAR 382

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +   +  +   P VVTY ++I    K G   +  E F+ M   G  PNS TY  ++  +
Sbjct: 383 ELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGF 442

Query: 252 SKAG 255
            + G
Sbjct: 443 LRNG 446



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 119/258 (46%), Gaps = 4/258 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C Q +  +A  LF +M+  G  PSV  Y  L+  + +SG +DEA   + +M S  
Sbjct: 228 LMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEM-SHK 286

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD  TYS L+K   +  R    +K+L EM   G+    +TY+ ++DG  K    +E 
Sbjct: 287 ALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEA 346

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                AM ES    P+IF    +I    N G +E   + ++   + G++ D+ T  ++  
Sbjct: 347 FELLKAMQESK-IEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMIS 405

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G+ ++   +   M      P   TYN++I+ F + G         ++M  RG   
Sbjct: 406 GLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSA 465

Query: 240 NSITYCSLVSAYSKAGLI 257
           +S T+  L    S+  +I
Sbjct: 466 DSSTFQMLSDLESRDEII 483



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 130/282 (46%), Gaps = 3/282 (1%)

Query: 58  VSDCKPDVYTYSILIKS-CTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
           +S+ +PDVYT +ILI   C   H  F     +L  M  LG++ + VT++T+++G     K
Sbjct: 3   LSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAK 62

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
             +    F  MV+ G   PD+ T +++I+     G+     +   +    G K ++   +
Sbjct: 63  IIDAVKLFDEMVKMG-YEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYS 121

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +  S  +  +  +    +  M  R   P VVTY+ ++  F   G   +    FK+M  R
Sbjct: 122 TIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVER 181

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            + P+++T+  LV   SK G+I++   +   +    V  +   +N ++  Y     +++ 
Sbjct: 182 NVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEA 241

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +LF  M  + C P   ++  +I+ +   G  + A+ L  +M
Sbjct: 242 QKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEM 283



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 81/179 (45%), Gaps = 4/179 (2%)

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMR---SVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           +L  ++ D+ TL IL   +  +  +D      SV+  M K    P  VT++ ++      
Sbjct: 2   DLSNIRPDVYTLTILINCFCHSN-HDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
             I    + F +M   G +P+ ITY ++++   K G       +L+++E      +   +
Sbjct: 61  AKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVY 120

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + II +  +   + +  E    M  R   P+ +T+++++  +  LG +  A +L  +M+
Sbjct: 121 STIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMV 179


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 152/310 (49%), Gaps = 4/310 (1%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D+Y  ++  Y +   +D+A     +M+    CKPD   Y+ LI + ++  ++     I+ 
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWR-CKPDADIYNSLIHAHSRAGQWRWAINIME 70

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M    I  +  TYN +I+  G A  +++       M E+ G  PD+ T N ++SA  N 
Sbjct: 71  DMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTEN-GVGPDLVTHNIVLSALKNG 129

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVV 207
               K   ++       V +D  TLNI+     + G   +   + + M++R     P VV
Sbjct: 130 AQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVV 189

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  ++ ++   G +E  +  F  M   G+KPN + Y SL+ AY+  G+  +  +I   +
Sbjct: 190 TYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLI 249

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           + + +  D   +  +++AYG++   EK  E+F  MK+  C P+ +++  +I AY + GM 
Sbjct: 250 KKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGML 309

Query: 328 EAAQNLENKM 337
           + A  L ++M
Sbjct: 310 KEAVGLLHEM 319



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 182/417 (43%), Gaps = 74/417 (17%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +  +  Q +QA  LF  M     KP  D+Y +L+ A+ ++G    A + + DM   +   
Sbjct: 20  LYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAA-IP 78

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG------YGKA-KK 115
           P   TY+ +I +C     +    ++  +M+  G+    VT+N ++        Y KA   
Sbjct: 79  PTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISY 138

Query: 116 FEEMESS----------------------------FSAMVE-SGGCHPDIFTLNSMISAY 146
           FE M+ +                            F++M E    C PD+ T  S++ +Y
Sbjct: 139 FEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSY 198

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G +E  +  ++     GVK +I   N L  +Y   GM+ +  ++ + ++K    P +
Sbjct: 199 CIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDI 258

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL---------- 256
           V+Y  ++  +G++   EK  E F KMK    KPN ++Y +L+ AY  AG+          
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHE 318

Query: 257 -------------------------IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
                                    I ++++IL    +  + L+T  +N  I +Y   GD
Sbjct: 319 MEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGD 378

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLENKMIAMKENSGKK 347
            EK  EL+ +M+E +  PD +T+  +I   + LG  TE+ +  E+ M+  K +S K+
Sbjct: 379 YEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFED-MVDSKVSSTKE 434



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 166/357 (46%), Gaps = 33/357 (9%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAY-----GQSGLLDEAFSTINDMKSVSDCKP 63
           Q  +A   FE+M   G   + D +T  +  +     GQ G   E F+++ + ++   C P
Sbjct: 131 QYSKAISYFEIM--KGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRT--KCPP 186

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TY+ ++ S   + + +  + I   M   G++ + V YN+++  Y       E  + F
Sbjct: 187 DVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIF 246

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + +++  G  PDI +  S+++AYG S   EK  + +N+      K +  + N L  +YG 
Sbjct: 247 N-LIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGS 305

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AGM  +   ++  M+K    P VV+ + ++   G+   I ++E   +  + RG+  N++ 
Sbjct: 306 AGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVA 365

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG------------- 290
           Y S + +Y   G   K   +   +  S+V  D   +N +IS   + G             
Sbjct: 366 YNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMV 425

Query: 291 ----DVEKMGEL------FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                  K G+L      F +MK+  C PD +T+ T+IQAYNA G  + A +L  +M
Sbjct: 426 DSKVSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEM 482



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 161/343 (46%), Gaps = 33/343 (9%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E    +F++M+++G+KP++  Y +L+ AY   G+  EA +  N +K  +  +PD+ +Y
Sbjct: 203 QVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK-NGLRPDIVSY 261

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + L+ +  +  + +   ++  +M     + + V+YN +ID YG A   +E       M E
Sbjct: 262 TSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM-E 320

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             G  PD+ +++++++A G    I ++E         G+  +    N   KSY   G Y+
Sbjct: 321 KDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYE 380

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIE-----------------------TFGKAGHIEKM 225
           K   +   M++    P  VTYNI+I                        +  K G + + 
Sbjct: 381 KALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEGKLSEA 440

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           E  F  MK  G  P+ +TY +L+ AY+  G   +   + +++E + +  D    + ++ A
Sbjct: 441 ESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEA 500

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDN-------ITFATMIQAY 321
           + + G+ E++ +L   MK++  +P N       I   TMI+ +
Sbjct: 501 FNKGGEPERVLQLMEFMKKKS-IPLNQKSYFEIIASCTMIRDW 542



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 154/329 (46%), Gaps = 17/329 (5%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  QPE+A  +F  M  +  KP+   Y AL+ AYG +G+L EA   +++M+     +PD
Sbjct: 269 GRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEK-DGIQPD 327

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V + S L+ +C +  +   IE IL      GI+ + V YN+ I  Y     +E+    ++
Sbjct: 328 VVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYT 387

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           +M ES    PD  T N +IS     G   +  +++ +     V + +        S  + 
Sbjct: 388 SMRESN-VKPDAVTYNILISGSSKLGKYTESLRFFEDM----VDSKV--------SSTKE 434

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +  S    M+K   FP V+TY  +I+ +   G  ++  + FK+M+  G+ P++I  
Sbjct: 435 GKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIIC 494

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+ A++K G   +V  ++  ++   + L+   +  II++     D +   E+   +  
Sbjct: 495 SSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDS 554

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNL 333
                 +I+  T+    N LG     +N+
Sbjct: 555 SL---SSISVGTLNHVLNFLGKCGKTENM 580



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+ +  MI  Y     +++    + E      K D    N L  ++ RAG +    ++M
Sbjct: 12  DIYGM--MIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIM 69

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + M +    PT  TYN VI   G AG+ +K  E  KKM   G+ P+ +T+  ++SA    
Sbjct: 70  EDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNG 129

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 312
               K  S    ++ ++V  DT   N II    + G   +  ELF +M+ER   C PD +
Sbjct: 130 AQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVV 189

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           T+ +++ +Y   G  E  + + + M+A
Sbjct: 190 TYTSIMHSYCIYGQVENCKAIFDLMVA 216


>gi|147778635|emb|CAN76113.1| hypothetical protein VITISV_005528 [Vitis vinifera]
          Length = 466

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 8/321 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   M + G   S+  YT ++ A G  G   EA +   +M  +   K D+  Y++
Sbjct: 59  DKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLG-LKLDLRVYNV 117

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +++SC +    +L +K+LAEM  LGI  +  TY  ++D YG+A +  ++ +    M   G
Sbjct: 118 MLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEMSRDG 177

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD F  + +I  Y ++G  +K  +   E   MGV  D +  N +  ++G+ G   + 
Sbjct: 178 -FGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSEA 236

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V + MQ+    P ++T+N +I+   KAG + K  E F KM+  G+ P+   + +++S 
Sbjct: 237 LEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITIISR 296

Query: 251 YSKAGLIMKVDSILRQVENSDVI---LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
             + G   K D I R  EN            +  ++  YGQ G  +   E    +K    
Sbjct: 297 LGEQG---KWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGI 353

Query: 308 VPDNITFATMIQAYNALGMTE 328
            P    F  +  AY   G+ E
Sbjct: 354 QPSASMFCVLANAYAQQGLCE 374



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 153/324 (47%), Gaps = 16/324 (4%)

Query: 2   VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           VML  C +    E A  +   M + G+  +   Y ALV  YG++G L++ ++ I +M S 
Sbjct: 117 VMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEM-SR 175

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PD + YS +I        +    +I+ E+  +G+      YN+IID +GK  +  E
Sbjct: 176 DGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNSIIDTFGKCGELSE 235

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  M E G   PDI T NS+I  +  +G++ K  + +++    G+  D +    + 
Sbjct: 236 ALEVFEKMQEEG-VKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEGLYPDPKIFITII 294

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
              G  G +D ++   + M+ R    +   Y I+++ +G+ G  +  EE    +K  G++
Sbjct: 295 SRLGEQGKWDVIKRNFENMKCRGHQRSGAIYAILVDIYGQYGRFQGPEECISALKSEGIQ 354

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD------- 291
           P++  +C L +AY++ GL  +   +L+ +E   +  +    N +I+A+G AG        
Sbjct: 355 PSASMFCVLANAYAQQGLCEQTVKVLQLMETEGIEPNLIMLNMLINAFGIAGRHLEALSV 414

Query: 292 ----VEKMGELFLTMKERHCVPDN 311
                + + E++  M+   C PD 
Sbjct: 415 YHHIKDTVPEIYEEMESAGCTPDR 438



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 126/280 (45%), Gaps = 2/280 (0%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y+  I+   +    D   K+LA+M  LG   S  +Y T+I+  G   +  E E+ F  M
Sbjct: 44  VYNARIRESCRVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREM 103

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           V  G    D+   N M+ +    G +E  +K   E + +G+  +  T   L   YGRAG 
Sbjct: 104 VHLG-LKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGR 162

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            + + +V+  M +  F P    Y+ VI  +   G  +K  E  ++++  G+  +   Y S
Sbjct: 163 LNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRIYNS 222

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++  + K G + +   +  +++   V  D   +N +I  + +AGDV K  ELF  M+E  
Sbjct: 223 IIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELFSKMQEEG 282

Query: 307 CVPDNITFATMIQAYNALGMTEA-AQNLENKMIAMKENSG 345
             PD   F T+I      G  +   +N EN      + SG
Sbjct: 283 LYPDPKIFITIISRLGEQGKWDVIKRNFENMKCRGHQRSG 322



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 1/243 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G E S V YN  I    +    ++     + M E+ G    + +  ++I A G+ G   +
Sbjct: 37  GEELSGVVYNARIRESCRVGDVDKAMKLLAQM-EALGFSLSLGSYTTVIEALGSVGRTLE 95

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
            E  + E   +G+K D++  N++ +S  R G+ +    V+  M          TY  +++
Sbjct: 96  AEAIFREMVHLGLKLDLRVYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVD 155

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +G+AG +  +     +M   G  P+S  Y  ++  Y   G+  K   I+R++    V L
Sbjct: 156 YYGRAGRLNDVWAVIGEMSRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSL 215

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           D   +N II  +G+ G++ +  E+F  M+E    PD +T+ ++IQ +   G    A  L 
Sbjct: 216 DKRIYNSIIDTFGKCGELSEALEVFEKMQEEGVKPDIMTWNSLIQWHCKAGDVGKALELF 275

Query: 335 NKM 337
           +KM
Sbjct: 276 SKM 278



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 77/166 (46%)

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G  DK   ++  M+   F  ++ +Y  VIE  G  G   + E  F++M H G+K +  
Sbjct: 54  RVGDVDKAMKLLAQMEALGFSLSLGSYTTVIEALGSVGRTLEAEAIFREMVHLGLKLDLR 113

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y  ++ +  + GL+   D +L +++   +  +   +  ++  YG+AG +  +  +   M
Sbjct: 114 VYNVMLRSCLRKGLLELADKVLAEMDALGIGRNRATYEALVDYYGRAGRLNDVWAVIGEM 173

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 348
                 PD+  ++ +I  Y   GM + A  +  ++  M  +  K++
Sbjct: 174 SRDGFGPDSFVYSKVIGVYRDNGMWKKAMEIVREIREMGVSLDKRI 219


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 150/322 (46%), Gaps = 2/322 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M    +K SV  Y+ ++ +  + G  D+A S  N+M+ +   K DV TYS LI   
Sbjct: 261 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME-MKGIKADVVTYSSLIGGL 319

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               ++D   K+L EM    I    VT++ +ID + K  K  E +  ++ M+ + G  PD
Sbjct: 320 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI-TRGIAPD 378

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T NS+I  +     + +  + ++     G + DI T +IL  SY +A   D    +  
Sbjct: 379 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 438

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            +  +   P  +TYN ++  F ++G +   +E F++M  RG+ P+ +TY  L+      G
Sbjct: 439 EISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 498

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + K   I  +++ S + L    +N II     A  V+    LF ++ ++   PD +T+ 
Sbjct: 499 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 558

Query: 316 TMIQAYNALGMTEAAQNLENKM 337
            MI      G    A  L  KM
Sbjct: 559 VMIGGLCKKGSLSEADMLFRKM 580



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 143/311 (45%), Gaps = 2/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF  M   G+K  V  Y++L+      G  D+    + +M    +  PDV T+S 
Sbjct: 291 DDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG-RNIIPDVVTFSA 349

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  +    +++  EM   GI    +TYN++IDG+ K     E    F  MV S 
Sbjct: 350 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV-SK 408

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PDI T + +I++Y  +  ++   + + E +  G+  +  T N L   + ++G  +  
Sbjct: 409 GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA 468

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + +   M  R   P+VVTY I+++     G + K  E F+KM+   M      Y  ++  
Sbjct: 469 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 528

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
              A  +    S+   + +  V  D   +N +I    + G + +   LF  MKE  C PD
Sbjct: 529 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPD 588

Query: 311 NITFATMIQAY 321
           + T+  +I+A+
Sbjct: 589 DFTYNILIRAH 599



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 145/316 (45%), Gaps = 2/316 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G +P    ++ LV+ +   G + EA + ++ M  +   +PD+ T S LI       R   
Sbjct: 164 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ-RPDLVTVSTLINGLCLKGRVSE 222

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              ++  M   G +   VTY  +++   K+         F  M E       +   + +I
Sbjct: 223 ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM-EERNIKASVVQYSIVI 281

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            +    G+ +     +NE  + G+KAD+ T + L       G +D    ++  M  R   
Sbjct: 282 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 341

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVT++ +I+ F K G + + +E + +M  RG+ P++ITY SL+  + K   + + + +
Sbjct: 342 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 401

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              + +     D   ++ +I++Y +A  V+    LF  +  +  +P+ IT+ T++  +  
Sbjct: 402 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 461

Query: 324 LGMTEAAQNLENKMIA 339
            G   AA+ L  +M++
Sbjct: 462 SGKLNAAKELFQEMVS 477



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 10/310 (3%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M+     P+   +  L SA  ++   D        M+ ++  + D+YT +I+I   
Sbjct: 86  LFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGME-LNGIEHDMYTMTIMINCY 144

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +      +L     LG E   +T++T+++G+    +  E  +    MVE     PD
Sbjct: 145 CRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ-RPD 203

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT----LNILTKSYGRAGMYDKMR 191
           + T++++I+     G + +     +     G + D  T    LN L KS   A   D  R
Sbjct: 204 LVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFR 263

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
                M++R    +VV Y+IVI++  K G  +     F +M+ +G+K + +TY SL+   
Sbjct: 264 K----MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 319

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G       +LR++   ++I D   F+ +I  + + G + +  EL+  M  R   PD 
Sbjct: 320 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 379

Query: 312 ITFATMIQAY 321
           IT+ ++I  +
Sbjct: 380 ITYNSLIDGF 389



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 73/288 (25%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L+  M++ G+ P    Y +L+  + +   L EA + + D+     C+PD+ TYSIL
Sbjct: 362 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA-NQMFDLMVSKGCEPDIVTYSIL 420

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I S  K  R D   ++  E+S  G+  + +TYNT++ G+ ++ K    +  F  MV S G
Sbjct: 421 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV-SRG 479

Query: 132 CHPDIFTLNSMISAYGNSGNI-------EKMEK--------------------------W 158
             P + T   ++    ++G +       EKM+K                          W
Sbjct: 480 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 539

Query: 159 --YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
             +   +  GVK D+                                   VTYN++I   
Sbjct: 540 SLFCSLSDKGVKPDV-----------------------------------VTYNVMIGGL 564

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY-SKAGLIMKVDSI 263
            K G + + +  F+KMK  G  P+  TY  L+ A+   +GLI  V+ I
Sbjct: 565 CKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELI 612



 Score = 45.4 bits (106), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 51/285 (17%), Positives = 119/285 (41%), Gaps = 16/285 (5%)

Query: 63  PDVYTYSILIKSCTKFHR-----FDLIEKILAEMSYLGIECSAVTY-----NTIIDGYGK 112
           P +++   +I+     +R       ++EK  + + Y  I  + ++Y     N I+D    
Sbjct: 22  PTIHSLKKMIQRLIPLNRKASNFTQILEKGTSLLHYSSITEAKLSYKERLRNGIVD---- 77

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
             K  +    F +M++S    P     N + SA   +   + +  +     L G++ D+ 
Sbjct: 78  -IKVNDAIDLFESMIQSRPL-PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMY 135

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T+ I+   Y R        SV+    K  + P  +T++ ++  F   G + +      +M
Sbjct: 136 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 195

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
                +P+ +T  +L++     G + +   ++ ++       D   +  +++   ++G+ 
Sbjct: 196 VEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 255

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               +LF  M+ER+     + ++ +I +    G  + A +L N+M
Sbjct: 256 ALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 300


>gi|410110097|gb|AFV61128.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
           rugosa]
          Length = 348

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 140/284 (49%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     ++ EM   G+  +  +Y+T+
Sbjct: 5   KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTL 63

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S F  M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 64  LTMYVENKKFLEALSVFXEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 123 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 182

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ +S V +D   F  +I AY
Sbjct: 183 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAY 242

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI   T I      G  E A
Sbjct: 243 ERAGLVAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 282



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 125/251 (49%), Gaps = 1/251 (0%)

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           I + +   G     V YN +I+ +GKAK F E  S    M ++ G  P+  + +++++ Y
Sbjct: 9   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEM-KAAGVMPNTXSYSTLLTMY 67

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +    +    + E   +    D+ T NI+   YG+ GM  +   +   M+K    P V
Sbjct: 68  VENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNV 127

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V+YN ++  +G A    +    F+ M+ + ++ N +TY S++  Y K     K ++++++
Sbjct: 128 VSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 187

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +++  +  ++  ++ IIS +G+ G +++   LF  ++      D I F TMI AY   G+
Sbjct: 188 MQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGL 247

Query: 327 TEAAQNLENKM 337
              A+ L +++
Sbjct: 248 VAHAKRLLHEL 258



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 148/343 (43%), Gaps = 39/343 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I +MK+ +   P+  +YS L+   
Sbjct: 9   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKA-AGVMPNTXSYSTLLTMY 67

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     +  EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 68  VENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 126

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 127 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 183

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK------------------- 233
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++                   
Sbjct: 184 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYE 243

Query: 234 ------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                       H   +P++I   + +   + AG I +   + RQ  ++  + D   F  
Sbjct: 244 RAGLVAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDAGEVKDITVFER 303

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
           +I    +      + E+F  M+     PD+   A ++ AY  L
Sbjct: 304 MIHLLSKYKKYSNVVEVFDKMRGLGYFPDSDVIAIVLNAYGKL 346



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 105/217 (48%), Gaps = 1/217 (0%)

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S FS +  SG   PD+   N+MI+ +G +    +      E    GV  +  + + L   
Sbjct: 8   SIFSRLKRSGFT-PDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTM 66

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y     + +  SV   M++      + T NI+I+ +G+ G  ++ ++ F  M+  G++PN
Sbjct: 67  YVENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPN 126

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            ++Y +L+  Y  A L  +   + R ++  ++  +   +N ++  YG+  + EK   L  
Sbjct: 127 VVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQ 186

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M+ R   P++IT++T+I  +  +G  + A  L  K+
Sbjct: 187 EMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKL 223



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 70/135 (51%)

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 3   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYST 62

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++ Y +    ++  S+  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 63  LLTMYVENKKFLEALSVFXEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 122

Query: 307 CVPDNITFATMIQAY 321
             P+ +++ T+++ Y
Sbjct: 123 IEPNVVSYNTLLRVY 137


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 177/406 (43%), Gaps = 78/406 (19%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--- 55
           ++M   CK    + A ++F+ M SDG+ P   +   LVS+Y + G LD A + +N++   
Sbjct: 114 LLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCY 173

Query: 56  ------------------KSVSD-------------CKPDVYTYSILIKSCTKFHRFDLI 84
                             +++ D               PDVY+++ILI+   +    D  
Sbjct: 174 GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKA 233

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            +    M   G     V+YNT+I+G+ +  +  +        +   G  PD+ T  S+IS
Sbjct: 234 FEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIIS 293

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF- 203
            Y   G+++   + ++E    G+K +  T N+L   +G+ G    MRS M   +K     
Sbjct: 294 GYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVG---NMRSAMVMYEKMLLLG 350

Query: 204 --PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P VVT+  +I+ + + G + +  + +++MK R + PN  TY  L++A  K   I +  
Sbjct: 351 CLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREAR 410

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER---------------- 305
           + LR +++S+V+     +N +I  + +AG V++   +   M+E+                
Sbjct: 411 NFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGN 470

Query: 306 -------------------HCVPDNITFATMIQAYNALGM-TEAAQ 331
                              +CVPD IT  ++I      GM  EA+Q
Sbjct: 471 CMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQ 516



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 119/254 (46%), Gaps = 10/254 (3%)

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
           ++L I  +  TY+ ++    K    +  +  F  M  S G  PD   L  ++S+Y   G 
Sbjct: 101 THLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCM-RSDGILPDSSILELLVSSYARMGK 159

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           ++  + + NE +  G+K      N L     +  + D+   +     + +F P V ++NI
Sbjct: 160 LDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNI 219

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I    + G I+K  E+F+ M + G  P+ ++Y +L++ + +   I K   +L++    D
Sbjct: 220 LIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKE----D 275

Query: 272 VIL-----DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +++     D   +  IIS Y + GD++   ELF  M      P++ TF  +I  +  +G 
Sbjct: 276 MLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGN 335

Query: 327 TEAAQNLENKMIAM 340
             +A  +  KM+ +
Sbjct: 336 MRSAMVMYEKMLLL 349


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 171/362 (47%), Gaps = 37/362 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+++ E+M   G+ P+   YT ++ AYG++G  DEA      MK  + C P+  TY+ 
Sbjct: 375 KEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKE-AGCVPNTCTYNA 433

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K  R + + K+L +M   G   +  T+NTI+   G     + +   F  M +S 
Sbjct: 434 VLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREM-KSC 492

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD  T N++ISAYG  G+     K Y E    G  A + T N L  +  R G +   
Sbjct: 493 GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSG 552

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGH---IEKMEE-------------------- 227
            +V+  M+ + F PT  +Y+++++ + K G+   IE++EE                    
Sbjct: 553 ENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSWMLLRTLLLA 612

Query: 228 ------------YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                        F   K  G KP+ + + S++S +++  +  + + IL+ +    +  D
Sbjct: 613 NFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPD 672

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N ++  Y + G+  K  E+  T+++    PD +++ T+I+ +   G+ + A  + +
Sbjct: 673 LVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLS 732

Query: 336 KM 337
           +M
Sbjct: 733 EM 734



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 147/357 (41%), Gaps = 35/357 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A   F  + S G +P    Y AL+  +G++G+  EA S + +M+  ++C  D  TY+ 
Sbjct: 305 REAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEE-NNCPADSVTYNE 363

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +         ++  M+  G+  +A+TY T+ID YGKA K +E    F +M E+G
Sbjct: 364 LVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAG 423

Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                                             GC P+  T N++++  GN G  + + 
Sbjct: 424 CVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVN 483

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           + + E    G + D  T N L  +YGR G       +   M +  F   V TYN ++   
Sbjct: 484 RVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNAL 543

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            + G     E     MK +G KP   +Y  ++  Y+K G  + ++ I   +    +    
Sbjct: 544 ARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPSW 603

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                ++ A  +   +      F   K+    PD + F +M+  +    M + A+ +
Sbjct: 604 MLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGI 660



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 152/326 (46%), Gaps = 4/326 (1%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A LL ++ L D +   V  YT ++ AY ++G  ++A +    MK +    P + TY++++
Sbjct: 202 AKLLDKIPLQDYML-DVRAYTTILHAYSRTGKYEKAINLFERMKEMGP-SPTLVTYNVIL 259

Query: 73  KSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
               K  R +  I  +L EM   G++    T +T++    +     E +  F A ++S G
Sbjct: 260 DVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFF-AELKSCG 318

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P   T N+++  +G +G   +      E       AD  T N L  +Y RAG   +  
Sbjct: 319 YEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAA 378

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V++ M ++   P  +TY  VI+ +GKAG  ++  + F  MK  G  PN+ TY +++S  
Sbjct: 379 VVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSML 438

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K     ++  +L  ++++    +   +N I++  G  G  + +  +F  MK     PD 
Sbjct: 439 GKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDR 498

Query: 312 ITFATMIQAYNALGMTEAAQNLENKM 337
            TF T+I AY   G    A  +  +M
Sbjct: 499 DTFNTLISAYGRCGSEVDASKMYGEM 524



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 133/280 (47%), Gaps = 9/280 (3%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           K D +   IL++   +  ++ +  K+L ++           Y TI+  Y +  K+E+  +
Sbjct: 179 KLDHHVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAIN 238

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            F  M E G   P + T N ++  +G  G +  K+     E    G+K D  T + +  +
Sbjct: 239 LFERMKEMGP-SPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLSA 297

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             R G+  + +     ++   + P  VTYN +++ FGKAG   +     K+M+      +
Sbjct: 298 CAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPAD 357

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           S+TY  LV+AY++AG   +   ++  +    V+ +   +  +I AYG+AG  ++  +LF 
Sbjct: 358 SVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFY 417

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           +MKE  CVP+  T       YNA+      ++  N+MI M
Sbjct: 418 SMKEAGCVPNTCT-------YNAVLSMLGKKSRSNEMIKM 450



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 164/402 (40%), Gaps = 70/402 (17%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  + ++A  LF  M   G  P+   Y A++S  G+    +E    + DMKS + C P+
Sbjct: 404 GKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKS-NGCFPN 462

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-------AKKFE 117
             T++ ++  C        + ++  EM   G E    T+NT+I  YG+       +K + 
Sbjct: 463 RATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYG 522

Query: 118 EM-ESSFSAMV--------------------------ESGGCHPDIFTLNSMISAYGNSG 150
           EM  + F+A V                          +S G  P   + + M+  Y   G
Sbjct: 523 EMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGG 582

Query: 151 N---IEKMEKWYNE--------------------------------FNLMGVKADIQTLN 175
           N   IE++E+  NE                                F   G K D+   N
Sbjct: 583 NYLGIERIEEGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFN 642

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +   + R  MYD+   ++  + +    P +VTYN +++ + + G   K EE  K ++  
Sbjct: 643 SMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKS 702

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            +KP+ ++Y +++  + + GL+ +   +L ++    +      +N  +S Y   G   ++
Sbjct: 703 QLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEI 762

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            ++   M +  C P+ +TF  ++  Y   G    A +  +K+
Sbjct: 763 EDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKI 804



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 122/268 (45%), Gaps = 39/268 (14%)

Query: 105 TIIDGYGKAKKFEEMESSFSAMV---ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           +++ G   +  +E     F  +V    SG    D   +  ++   G         K  ++
Sbjct: 148 SLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHHVIEILVRILGRESQYSVAAKLLDK 207

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
             L     D++    +  +Y R G Y+K  ++ + M++    PT+VTYN++++ FGK G 
Sbjct: 208 IPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGR 267

Query: 222 --------IEKM----------------------------EEYFKKMKHRGMKPNSITYC 245
                   +E+M                            +++F ++K  G +P ++TY 
Sbjct: 268 SWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYN 327

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L+  + KAG+  +  S+L+++E ++   D+  +N +++AY +AG  ++   +   M ++
Sbjct: 328 ALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQK 387

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNL 333
             +P+ IT+ T+I AY   G  + A  L
Sbjct: 388 GVMPNAITYTTVIDAYGKAGKEDEALKL 415



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 10/212 (4%)

Query: 139 LNSMISAYGNSGNIEK---MEKWYN-EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           L S++    +SG+ E+   + +W     N   +K D   + IL +  GR   Y     ++
Sbjct: 146 LVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHHVIEILVRILGRESQYSVAAKLL 205

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D +  + +   V  Y  ++  + + G  EK    F++MK  G  P  +TY  ++  + K 
Sbjct: 206 DKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKM 265

Query: 255 GL-IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           G    K+  +L ++ +  +  D    + ++SA  + G + +  + F  +K     P  +T
Sbjct: 266 GRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVT 325

Query: 314 FATMIQAYNALGM-TEAAQNLENKMIAMKENS 344
           +  ++Q +   G+ TEA   L+     M+EN+
Sbjct: 326 YNALLQVFGKAGVYTEALSVLKE----MEENN 353


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 157/331 (47%), Gaps = 4/331 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E+     + M ++G +P    + +LV+   + G +  A   ++ M       
Sbjct: 290 GYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQ-EGFD 348

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD++TY+ LI    K    +   +IL +M       + VTYNT+I    K  + EE  + 
Sbjct: 349 PDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEA-TE 407

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + ++ S G  PD+ T NS+I     + N     + + E    G   D  T N+L  S  
Sbjct: 408 LARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLC 467

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  ++  S++  M+       VVTYN +I+ F K   IE+ EE F +M+ +G+  N +
Sbjct: 468 SRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVV 527

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+    K   + +   ++ Q+    +  D   +N +++ + +AGD++K  ++  TM
Sbjct: 528 TYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTM 587

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNL 333
               C PD++T+ T+I   +  G  E A  L
Sbjct: 588 TSNGCEPDSVTYGTLILGLSKAGRVELASRL 618



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 149/321 (46%), Gaps = 4/321 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + E+A  +   M+     P+   Y  L+S   +   ++EA + +  + +  
Sbjct: 357 LIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEA-TELARVLTSK 415

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PDV T++ LI+     +   L  ++  EM   G      TYN +ID      + EE 
Sbjct: 416 GILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEA 475

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            S    M ES GC  ++ T N++I  +  +  IE+ E+ ++E  L G+  ++ T N L  
Sbjct: 476 LSLLKEM-ESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLID 534

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              +    ++   +MD M      P   TYN ++  F +AG I+K  +  + M   G +P
Sbjct: 535 GLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEP 594

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +S+TY +L+   SKAG +     +LR V+   ++L    +N +I A  +     +   LF
Sbjct: 595 DSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLF 654

Query: 300 LTMKERHCVPDNITFATMIQA 320
             M E+   PD +T+  + + 
Sbjct: 655 REMMEKGDPPDAVTYKVVFRG 675



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 151/348 (43%), Gaps = 38/348 (10%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           +  L+ +Y +  L DEA + ++ M+     K D +TY+ L+      ++  L+E + + M
Sbjct: 143 FLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRM 202

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKF-------EEM--------ESSFSAMVE-------- 128
              GI+    T+N +I    +A +        EEM        E +F+ +++        
Sbjct: 203 VSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNM 262

Query: 129 -----------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
                      + GC     T+N ++  Y   G IE++  + +E +  G + D  T N L
Sbjct: 263 NGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSL 322

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                R G       ++D M +  F P + TYN +I    K G +E+  E   +M  R  
Sbjct: 323 VNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDF 382

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            PN++TY +L+S   K   + +   + R + +  ++ D   FN +I       +     E
Sbjct: 383 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAME 442

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           LF  MK + C PD  T+  +I +  + G  E A +L  +M    E+SG
Sbjct: 443 LFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEM----ESSG 486



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 151/323 (46%), Gaps = 2/323 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + +VML +G  P +  Y +L+    + G ++EA   +N M  + D  P+  TY+ LI + 
Sbjct: 338 ILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQM-ILRDFSPNTVTYNTLISTL 396

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K ++ +   ++   ++  GI     T+N++I G             F  M ++ GCHPD
Sbjct: 397 CKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEM-KTKGCHPD 455

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            FT N +I +  + G +E+      E    G   ++ T N L   + +    ++   + D
Sbjct: 456 EFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFD 515

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ +     VVTYN +I+   K   +E+  +   +M   G+KP+  TY SL++ + +AG
Sbjct: 516 EMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAG 575

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I K   I++ + ++    D+  +  +I    +AG VE    L  T++ +  V    T+ 
Sbjct: 576 DIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYN 635

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
            +I+A      T  A  L  +M+
Sbjct: 636 PVIKALFREKRTSEAVRLFREMM 658



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 123/276 (44%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P    Y  +++   K   F  + ++L EM + G E    T+  +I+ Y K + F+E  + 
Sbjct: 103 PSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAV 162

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E  G   D FT N +++   +   ++ +E   +     G+K D+ T NIL K+  
Sbjct: 163 VDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALC 222

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           RA        +M+ M      P   T+  +++ F + G++       ++M   G   +++
Sbjct: 223 RAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNV 282

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T   LV  Y K G I +V S + ++ N     D   FN +++   + G V+   E+   M
Sbjct: 283 TVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVM 342

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +    PD  T+ ++I     LG  E A  + N+MI
Sbjct: 343 LQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMI 378



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 77/200 (38%), Gaps = 37/200 (18%)

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
           L  +  R    D +  ++D+  K+  F P+ V Y  V+   GK G    M    ++MKH 
Sbjct: 75  LRDALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHT 134

Query: 236 GMKPNSITYCSLVSAYSKAGLI---------------MKVDSI----------------L 264
           G +    T+  L+ +Y+K  L                +K+D+                 L
Sbjct: 135 GCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKL 194

Query: 265 RQVENSDVI-----LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
            ++ NS ++      D   FN +I A  +A  +     +   M      PD  TF T++Q
Sbjct: 195 VEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQ 254

Query: 320 AYNALGMTEAAQNLENKMIA 339
            +   G    A  +  +M+A
Sbjct: 255 GFIEEGNMNGALRIREQMVA 274


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 177/406 (43%), Gaps = 78/406 (19%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--- 55
           ++M   CK    + A ++F+ M SDG+ P   +   LVS+Y + G LD A + +N++   
Sbjct: 114 LLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCY 173

Query: 56  ------------------KSVSD-------------CKPDVYTYSILIKSCTKFHRFDLI 84
                             +++ D               PDVY+++ILI+   +    D  
Sbjct: 174 GIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKA 233

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            +    M   G     V+YNT+I+G+ +  +  +        +   G  PD+ T  S+IS
Sbjct: 234 FEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIIS 293

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF- 203
            Y   G+++   + ++E    G+K +  T N+L   +G+ G    MRS M   +K     
Sbjct: 294 GYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVG---NMRSAMVMYEKMLLLG 350

Query: 204 --PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P VVT+  +I+ + + G + +  + +++MK R + PN  TY  L++A  K   I +  
Sbjct: 351 CLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREAR 410

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER---------------- 305
           + LR +++S+V+     +N +I  + +AG V++   +   M+E+                
Sbjct: 411 NFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGN 470

Query: 306 -------------------HCVPDNITFATMIQAYNALGM-TEAAQ 331
                              +CVPD IT  ++I      GM  EA+Q
Sbjct: 471 CMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQ 516



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 119/254 (46%), Gaps = 10/254 (3%)

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
           ++L I  +  TY+ ++    K    +  +  F  M  S G  PD   L  ++S+Y   G 
Sbjct: 101 THLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCM-RSDGILPDSSILELLVSSYARMGK 159

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           ++  + + NE +  G+K      N L     +  + D+   +     + +F P V ++NI
Sbjct: 160 LDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNI 219

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I    + G I+K  E+F+ M + G  P+ ++Y +L++ + +   I K   +L++    D
Sbjct: 220 LIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKE----D 275

Query: 272 VIL-----DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +++     D   +  IIS Y + GD++   ELF  M      P++ TF  +I  +  +G 
Sbjct: 276 MLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGN 335

Query: 327 TEAAQNLENKMIAM 340
             +A  +  KM+ +
Sbjct: 336 MRSAMVMYEKMLLL 349


>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 159/337 (47%), Gaps = 2/337 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + + G+     + S +F+ M   G  P  D +  L+S+Y + G  D+A +    M     
Sbjct: 181 LSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAG- 239

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+ +Y+ ++ +  +   +   EK+LAEM     + + +TY +++  Y   K+ E M 
Sbjct: 240 VNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERM- 298

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            + +  + SG   P    L +++        + + E+ + E    G   DI TLN +   
Sbjct: 299 CALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSI 358

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YGR  M  K   ++D M++  F P++ TYN ++  + ++ + E+ EE  +++  +G++P+
Sbjct: 359 YGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPD 418

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            I+Y +++ AY + G +     +L ++  S    D   +N  I++Y       +  ++  
Sbjct: 419 IISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVC 478

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M +  C P+  T+ +++  Y  L   + A    N +
Sbjct: 479 YMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNL 515



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 126/272 (46%), Gaps = 1/272 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           KPDV+TY+ L+    K  +     +I  EM   G + +  T+N +I  +G   KF EM  
Sbjct: 101 KPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMK 160

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F   +++  C PDI T N+++S +G +G   ++   + E    G   +  T N L  SY
Sbjct: 161 VFED-IKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSY 219

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R G +D+  +V   M +    P + +YN V+    + G  ++ E+   +MK    KPN 
Sbjct: 220 SRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNE 279

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TYCSL+ AY+    I ++ ++  ++ +  +         ++    +   + +    FL 
Sbjct: 280 LTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLE 339

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +++R   PD  T   M+  Y    M   A  +
Sbjct: 340 LRQRGFSPDITTLNAMVSIYGRRQMVAKANEI 371



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 151/330 (45%), Gaps = 2/330 (0%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           P  A  L   M+  G+KP V  YT L+S + ++G    A     +M++   CKP++ T++
Sbjct: 85  PPDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRN-EGCKPNICTFN 143

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            LIK      +F  + K+  ++         VT+NT++  +G+     E+   F  M  +
Sbjct: 144 ALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRA 203

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G   P+  T N++IS+Y   G+ ++    Y      GV  D+ + N +  +  R G++ +
Sbjct: 204 GFV-PERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQ 262

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              V+  M+     P  +TY  ++  +     IE+M    +++    ++P ++   +LV 
Sbjct: 263 SEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVL 322

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
             SK  L+M+ +    ++       D    N ++S YG+   V K  E+   MK     P
Sbjct: 323 VNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTP 382

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIA 339
              T+ +++  Y+     E ++ +  +++A
Sbjct: 383 SLTTYNSLMYMYSRSANFERSEEILREILA 412


>gi|223946379|gb|ACN27273.1| unknown [Zea mays]
 gi|413924536|gb|AFW64468.1| pentatricopeptide repeat 5 [Zea mays]
          Length = 386

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 151/323 (46%), Gaps = 5/323 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++G+  Q   A  LF  M + G KP   VY +L+ A+     ++  L +A      MK +
Sbjct: 20  VMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKTKALAKALGYFEKMKCI 79

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P + TY+IL+++  +      ++ +  ++    +     TYN ++D YGK    +E
Sbjct: 80  ERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYGKNGMIKE 139

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           MES    M +S  C PD+ T N +I +YG     +KME+ +        +    T N + 
Sbjct: 140 MESVLVRM-KSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMI 198

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YGRA + +K  SV++ M++  F P  VT   +I  +     + K  + F ++     K
Sbjct: 199 TNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDELVTSQTK 258

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            +  +  S++ AY   GL  + D +L       V+ +   +  +  AY +A D   + +L
Sbjct: 259 VHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLYKAYTKANDKLLVQKL 318

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
              M ++  VP+   F   ++A+
Sbjct: 319 LKRMNKQGIVPNKKFFLDALEAF 341



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 147/314 (46%), Gaps = 11/314 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +Y+ L+S  G+ G +  A    + M++ S CKPD   Y+ LI +    H  D  + +   
Sbjct: 13  IYSKLISVMGRKGQIRMAMWLFSQMRN-SGCKPDTSVYNSLIGA--HLHSRDKTKALAKA 69

Query: 91  MSYL-GIEC------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + Y   ++C      + VTYN ++  + +A   ++++  F  + ES    PD++T N ++
Sbjct: 70  LGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESV-VSPDVYTYNGVL 128

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AYG +G I++ME           + D+ T NIL  SYGR   +DKM  V   + +    
Sbjct: 129 DAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKER 188

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT  T+N +I  +G+A   EK E   +KM+  G KPN +T   L+  Y+    + K   +
Sbjct: 189 PTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQV 248

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             ++  S   +     N ++ AY   G   +   L  T  ++  VP+  T+  + +AY  
Sbjct: 249 FDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLYKAYTK 308

Query: 324 LGMTEAAQNLENKM 337
                  Q L  +M
Sbjct: 309 ANDKLLVQKLLKRM 322



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 6/241 (2%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNE 161
           Y+ +I   G+  +       FS M  SG C PD    NS+I A+ +S +  K + K    
Sbjct: 14  YSKLISVMGRKGQIRMAMWLFSQMRNSG-CKPDTSVYNSLIGAHLHSRDKTKALAKALGY 72

Query: 162 FNLMGV----KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
           F  M      +  I T NIL +++ +AG   ++  +   + +    P V TYN V++ +G
Sbjct: 73  FEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYG 132

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           K G I++ME    +MK    +P+ IT+  L+ +Y +     K++ + + +  S      P
Sbjct: 133 KNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHP 192

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            FN +I+ YG+A   EK   +   M+E    P+ +T   +I  Y        A+ + +++
Sbjct: 193 TFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDEL 252

Query: 338 I 338
           +
Sbjct: 253 V 253



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 13/171 (7%)

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI-- 213
           ++WY         AD    + L    GR G       +   M+     P    YN +I  
Sbjct: 4   QRWY--------VADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGA 55

Query: 214 --ETFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
              +  K   + K   YF+KMK     +P  +TY  L+ A+++AG   +VD + + ++ S
Sbjct: 56  HLHSRDKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDES 115

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            V  D   +N ++ AYG+ G +++M  + + MK   C PD ITF  +I +Y
Sbjct: 116 VVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSY 166


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 150/322 (46%), Gaps = 2/322 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M    +K SV  Y+ ++ +  + G  D+A S  N+M+ +   K DV TYS LI   
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME-MKGIKADVVTYSSLIGGL 290

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               ++D   K+L EM    I    VT++ +ID + K  K  E +  ++ M+ + G  PD
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI-TRGIAPD 349

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T NS+I  +     + +  + ++     G + DI T +IL  SY +A   D    +  
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 409

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            +  +   P  +TYN ++  F ++G +   +E F++M  RG+ P+ +TY  L+      G
Sbjct: 410 EISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 469

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + K   I  +++ S + L    +N II     A  V+    LF ++ ++   PD +T+ 
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 529

Query: 316 TMIQAYNALGMTEAAQNLENKM 337
            MI      G    A  L  KM
Sbjct: 530 VMIGGLCKKGSLSEADMLFRKM 551



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 143/311 (45%), Gaps = 2/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF  M   G+K  V  Y++L+      G  D+    + +M    +  PDV T+S 
Sbjct: 262 DDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG-RNIIPDVVTFSA 320

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  +    +++  EM   GI    +TYN++IDG+ K     E    F  MV S 
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV-SK 379

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PDI T + +I++Y  +  ++   + + E +  G+  +  T N L   + ++G  +  
Sbjct: 380 GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA 439

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + +   M  R   P+VVTY I+++     G + K  E F+KM+   M      Y  ++  
Sbjct: 440 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 499

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
              A  +    S+   + +  V  D   +N +I    + G + +   LF  MKE  C PD
Sbjct: 500 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPD 559

Query: 311 NITFATMIQAY 321
           + T+  +I+A+
Sbjct: 560 DFTYNILIRAH 570



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 145/316 (45%), Gaps = 2/316 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G +P    ++ LV+ +   G + EA + ++ M  +   +PD+ T S LI       R   
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ-RPDLVTVSTLINGLCLKGRVSE 193

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              ++  M   G +   VTY  +++   K+         F  M E       +   + +I
Sbjct: 194 ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM-EERNIKASVVQYSIVI 252

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            +    G+ +     +NE  + G+KAD+ T + L       G +D    ++  M  R   
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 312

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVT++ +I+ F K G + + +E + +M  RG+ P++ITY SL+  + K   + + + +
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 372

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              + +     D   ++ +I++Y +A  V+    LF  +  +  +P+ IT+ T++  +  
Sbjct: 373 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 432

Query: 324 LGMTEAAQNLENKMIA 339
            G   AA+ L  +M++
Sbjct: 433 SGKLNAAKELFQEMVS 448



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 10/310 (3%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M+     P+   +  L SA  ++   D        M+ ++  + D+YT +I+I   
Sbjct: 57  LFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGME-LNGIEHDMYTMTIMINCY 115

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +      +L     LG E   +T++T+++G+    +  E  +    MVE     PD
Sbjct: 116 CRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ-RPD 174

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT----LNILTKSYGRAGMYDKMR 191
           + T++++I+     G + +     +     G + D  T    LN L KS   A   D  R
Sbjct: 175 LVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFR 234

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
                M++R    +VV Y+IVI++  K G  +     F +M+ +G+K + +TY SL+   
Sbjct: 235 K----MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G       +LR++   ++I D   F+ +I  + + G + +  EL+  M  R   PD 
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350

Query: 312 ITFATMIQAY 321
           IT+ ++I  +
Sbjct: 351 ITYNSLIDGF 360



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 73/288 (25%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L+  M++ G+ P    Y +L+  + +   L EA + + D+     C+PD+ TYSIL
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA-NQMFDLMVSKGCEPDIVTYSIL 391

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I S  K  R D   ++  E+S  G+  + +TYNT++ G+ ++ K    +  F  MV S G
Sbjct: 392 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV-SRG 450

Query: 132 CHPDIFTLNSMISAYGNSGNI-------EKMEK--------------------------W 158
             P + T   ++    ++G +       EKM+K                          W
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510

Query: 159 --YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
             +   +  GVK D+                                   VTYN++I   
Sbjct: 511 SLFCSLSDKGVKPDV-----------------------------------VTYNVMIGGL 535

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY-SKAGLIMKVDSI 263
            K G + + +  F+KMK  G  P+  TY  L+ A+   +GLI  V+ I
Sbjct: 536 CKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELI 583



 Score = 44.7 bits (104), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 39/215 (18%), Positives = 92/215 (42%), Gaps = 1/215 (0%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F +M++S    P     N + SA   +   + +  +     L G++ D+ T+ I+   Y 
Sbjct: 58  FESMIQSRPL-PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYC 116

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R        SV+    K  + P  +T++ ++  F   G + +      +M     +P+ +
Sbjct: 117 RKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLV 176

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T  +L++     G + +   ++ ++       D   +  +++   ++G+     +LF  M
Sbjct: 177 TVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM 236

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +ER+     + ++ +I +    G  + A +L N+M
Sbjct: 237 EERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 271


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 174/364 (47%), Gaps = 37/364 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +  +A  L + M+  G +P++  Y  +V+   + G +D AF+ +N M++ +  + +V  Y
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEANVVIY 263

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S +I S  K+   D    +  EM   G+  + +TY+++I      +++ +     S M+E
Sbjct: 264 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIE 323

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
               +P++ T N++I A+   G + + EK Y+E     +  DI T + L   +      D
Sbjct: 324 RK-INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           + + + + M  +  FP VVTYN +I  F KA  I++  E F++M  RG+  N++TY +L+
Sbjct: 383 EAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442

Query: 249 SAYSKA----------------GL---IMKVDSILR------QVENSDVILD-------T 276
             + +A                G+   IM  +++L       ++E + V+ +        
Sbjct: 443 HGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 502

Query: 277 P---FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           P    +N +I    +AG VE   +LF ++  +   PD I + TMI  +   G+ E A  L
Sbjct: 503 PTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADAL 562

Query: 334 ENKM 337
             KM
Sbjct: 563 FRKM 566



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 132/264 (50%), Gaps = 2/264 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           AS L   M+   + P+V  + AL+ A+ + G L EA    ++M   S   PD++TYS LI
Sbjct: 314 ASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLI 372

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                  R D  + +   M       + VTYNT+I+G+ KAK+ +E    F  M + G  
Sbjct: 373 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRG-L 431

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             +  T  ++I  +  + + +  +  + +    GV  +I T N L     + G  +K   
Sbjct: 432 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMV 491

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V +++Q+    PT+ TYNI+IE   KAG +E   + F  +  +G+KP+ I Y +++S + 
Sbjct: 492 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFC 551

Query: 253 KAGLIMKVDSILRQVENSDVILDT 276
           + GL  + D++ R++     + D+
Sbjct: 552 RKGLKEEADALFRKMREDGPLPDS 575



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 146/310 (47%), Gaps = 2/310 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  + A  LF  M + G++P+V  Y++L+S         +A   ++DM       P
Sbjct: 270 LCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIE-RKINP 328

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V T++ LI +  K  +    EK+  EM    I+    TY+++I+G+    + +E +  F
Sbjct: 329 NVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 388

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ S  C P++ T N++I+ +  +  I++  + + E +  G+  +  T   L   + +
Sbjct: 389 ELMI-SKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQ 447

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A   D  + V   M      P ++TYN +++   K G +EK    F+ ++   M+P   T
Sbjct: 448 ARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 507

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  ++    KAG +     +   +    V  D   +N +IS + + G  E+   LF  M+
Sbjct: 508 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMR 567

Query: 304 ERHCVPDNIT 313
           E   +PD+ T
Sbjct: 568 EDGPLPDSGT 577



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 150/332 (45%), Gaps = 37/332 (11%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+   A  L + M+  G +P    +T L+          EA + ++ M     C+P++ T
Sbjct: 169 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVT 227

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y +++    K    DL   +L +M    IE + V Y+T+ID   K +  ++  + F+ M 
Sbjct: 228 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM- 286

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+ G  P++ T +S+IS   N       E+W                             
Sbjct: 287 ENKGVRPNVITYSSLISCLCN------YERWS---------------------------- 312

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D  R + D ++++   P VVT+N +I+ F K G + + E+ + +M  R + P+  TY SL
Sbjct: 313 DASRLLSDMIERKIN-PNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 371

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++ +     + +   +   + + D   +   +N +I+ + +A  +++  ELF  M +R  
Sbjct: 372 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGL 431

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           V + +T+ T+I  +      + AQ +  +M++
Sbjct: 432 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 463



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 155/330 (46%), Gaps = 14/330 (4%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M+     PS+  +  L+SA  +    D   S    M+ +     ++YTY+ILI   
Sbjct: 72  LFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLG-ISHNLYTYNILINCF 130

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +  L   +L +M  LG E S VT +++++GY   K+  +  +    MVE  G  PD
Sbjct: 131 CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM-GYRPD 189

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T  ++I          +     +     G + ++ T  ++     + G  D   ++++
Sbjct: 190 TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLN 249

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA----- 250
            M+       VV Y+ VI++  K  H +     F +M+++G++PN ITY SL+S      
Sbjct: 250 KMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYE 309

Query: 251 -YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            +S A  ++  D I R++ N +V+     FN +I A+ + G + +  +L+  M +R   P
Sbjct: 310 RWSDASRLLS-DMIERKI-NPNVVT----FNALIDAFVKEGKLVEAEKLYDEMIKRSIDP 363

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIA 339
           D  T++++I  +      + A+++   MI+
Sbjct: 364 DIFTYSSLINGFCMHDRLDEAKHMFELMIS 393



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 118/299 (39%), Gaps = 37/299 (12%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           LD+A      M   S   P ++ ++ L+ +  K  +FDL+  +  +M  LGI  +  TYN
Sbjct: 66  LDDAIGLFGGMVK-SRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I+ + +  +     +    M++ G   P I TL+S+++ Y +   I       ++   
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLG-YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE 183

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
           MG +                                   P  +T+  +I          +
Sbjct: 184 MGYR-----------------------------------PDTITFTTLIHGLFLHNKASE 208

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
                 +M  RG +PN +TY  +V+   K G I    ++L ++E + +  +   ++ +I 
Sbjct: 209 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVID 268

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           +  +    +    LF  M+ +   P+ IT++++I           A  L + MI  K N
Sbjct: 269 SLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKIN 327



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 98/256 (38%), Gaps = 38/256 (14%)

Query: 88  LAEMSYLGIECSAVT--YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           L  M Y G   S+ +  Y  I+     + K ++    F  MV+S    P IF  N ++SA
Sbjct: 36  LCGMCYWGRAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPL-PSIFEFNKLLSA 94

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
                 I KM+K                             +D + S+ + MQ+      
Sbjct: 95  ------IAKMKK-----------------------------FDLVISLGEKMQRLGISHN 119

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           + TYNI+I  F +   I        KM   G +P+ +T  SL++ Y     I    +++ 
Sbjct: 120 LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 179

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           Q+       DT  F  +I          +   L   M +R C P+ +T+  ++      G
Sbjct: 180 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239

Query: 326 MTEAAQNLENKMIAMK 341
             + A NL NKM A K
Sbjct: 240 DIDLAFNLLNKMEAAK 255


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 162/337 (48%), Gaps = 4/337 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK     +A   +  M S G+ P V  Y+ L+  +  +G L  AFS +N+M ++ +  
Sbjct: 281 GLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEM-TLKNIN 339

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDVYTY+ILI +  K  +    + +L  M+  G++ + VTY+T++DGY    +    +  
Sbjct: 340 PDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQI 399

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F AMV++   +P + + N MI+      ++++      E     V  +  T N L     
Sbjct: 400 FHAMVQTE-VNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLC 458

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G       +M  +  R     V+TY  +++   K  +++K    F KMK RG++PN  
Sbjct: 459 KSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKY 518

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+    K   +     + + +      +D   +N +I    + G +++   +   M
Sbjct: 519 TYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKM 578

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           ++  C+PD +TF  +I++       + A+ L ++MIA
Sbjct: 579 EDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIA 615



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 153/338 (45%), Gaps = 12/338 (3%)

Query: 2   VMLGKCKQPE-QASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C + E + SL F + +++ G + +   Y  L++   + G   E    I  ++ + 
Sbjct: 208 LMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIG---ETRCAIKLLRMIE 264

Query: 60  D--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           D   +PDV  Y+ +I    K    +       EM+  GI    +TY+T+I G+  A    
Sbjct: 265 DRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAG--- 321

Query: 118 EMESSFSAMVESG--GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           ++  +FS + E      +PD++T   +I A    G +++ +         GVK ++ T +
Sbjct: 322 QLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYS 381

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L   Y   G     + +   M +    P+V +YNI+I    K   +++     ++M H+
Sbjct: 382 TLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHK 441

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            + PN++TY SL+    K+G I     +++++ +     D   +  ++    +  +++K 
Sbjct: 442 NVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKA 501

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             LF+ MKER   P+  T+  +I         + AQ L
Sbjct: 502 IALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKL 539



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 148/339 (43%), Gaps = 20/339 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K    A  L + M   G++P +   + L++ +   G +  +FS +  +  +   +P
Sbjct: 142 LVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGY-QP 200

Query: 64  DVYTYSILIKS-CTK--------FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           +    + L+K  C K        FH     +K++A+    G + + V+Y T+++G  K  
Sbjct: 201 NTIILTTLMKGLCLKGEVKKSLHFH-----DKVVAQ----GFQMNQVSYGTLLNGLCKIG 251

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           +          M+E     PD+   N++I        + +   +Y E N  G+  D+ T 
Sbjct: 252 E-TRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITY 310

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           + L   +  AG      S+++ M  +   P V TY I+I+   K G +++ +     M  
Sbjct: 311 STLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTK 370

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+KPN +TY +L+  Y   G +     I   +  ++V      +N +I+   +   V++
Sbjct: 371 EGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDE 430

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
              L   M  ++ VP+ +T+ ++I      G   +A +L
Sbjct: 431 AMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDL 469



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 136/302 (45%), Gaps = 6/302 (1%)

Query: 44  LLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 103
           ++ +A S  N M  + +  P +  +  ++ S  K   F     +  +M   GIE   VT 
Sbjct: 112 VVHDAVSQFNGMLLMRN-TPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTL 170

Query: 104 NTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           + +I+ +       +M  SFS +  +   G  P+   L +++      G ++K   ++++
Sbjct: 171 SILINCFCH---LGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDK 227

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G + +  +   L     + G       ++  ++ R   P VV YN +I+   K   
Sbjct: 228 VVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKL 287

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           + +  +++ +M  RG+ P+ ITY +L+  +  AG +M   S+L ++   ++  D   +  
Sbjct: 288 VNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTI 347

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +I A  + G +++   L   M +    P+ +T++T++  Y  +G    A+ + + M+  +
Sbjct: 348 LIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTE 407

Query: 342 EN 343
            N
Sbjct: 408 VN 409



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 102/227 (44%), Gaps = 2/227 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
             A  +F  M+   + PSV  Y  +++   +   +DEA + + +M    +  P+  TY+ 
Sbjct: 394 HNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLH-KNVVPNTVTYNS 452

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  R      ++ E+ + G     +TY +++DG  K +  ++  + F  M E G
Sbjct: 453 LIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERG 512

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P+ +T  ++I        ++  +K +    + G   D+ T N++     + GM D+ 
Sbjct: 513 -IQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEA 571

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            ++   M+     P  VT+ I+I +  +    +K E+   +M  +G+
Sbjct: 572 LAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    ++A  LF  M   G++P+   YTAL+    +   L  A      +  V  C 
Sbjct: 491 GLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHI-LVKGCC 549

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            DVYTY+++I    K    D    + ++M   G    AVT+  II    +  + ++ E  
Sbjct: 550 IDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKL 609

Query: 123 FSAMVESGGCH 133
              M+  G  H
Sbjct: 610 LHEMIAKGLLH 620


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 157/326 (48%), Gaps = 2/326 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  LF+ M + G  P+V  Y  L+  Y +   +D+ F  +  M ++   +P++ +Y+++I
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM-ALKGLEPNLISYNVVI 282

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               +  R   +  +L EM+  G     VTYNT+I GY K   F +     + M+  G  
Sbjct: 283 NGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG-L 341

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            P + T  S+I +   +GN+ +  ++ ++  + G+  + +T   L   + + G  ++   
Sbjct: 342 TPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V+  M    F P+VVTYN +I      G +E      + MK +G+ P+ ++Y +++S + 
Sbjct: 402 VLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFC 461

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           ++  + +   + R++    +  DT  ++ +I  + +    ++  +L+  M      PD  
Sbjct: 462 RSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEF 521

Query: 313 TFATMIQAYNALGMTEAAQNLENKMI 338
           T+  +I AY   G  E A  L N+M+
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEMV 547



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 149/301 (49%), Gaps = 3/301 (0%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80
           + G  P V  Y A++ A  +S   +  A +   +M   S   P+V+TY+ILI+       
Sbjct: 162 AHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLE-SQVSPNVFTYNILIRGFCFAGN 220

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            D+   +  +M   G   + VTYNT+IDGY K +K ++      +M   G   P++ + N
Sbjct: 221 IDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG-LEPNLISYN 279

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I+     G ++++     E N  G   D  T N L K Y + G + +   +   M + 
Sbjct: 280 VVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 339

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P+V+TY  +I +  KAG++ +  E+  +M+ RG+ PN  TY +LV  +S+ G + + 
Sbjct: 340 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +LR++ ++        +N +I+ +   G +E    +   MKE+   PD ++++T++  
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459

Query: 321 Y 321
           +
Sbjct: 460 F 460



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 152/352 (43%), Gaps = 52/352 (14%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +   M  +G  PSV  Y AL++ +  +G +++A + + DMK      PDV +YS +
Sbjct: 398 EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE-KGLSPDVVSYSTV 456

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    + +  D   ++  EM   GI+   +TY+++I G+ + ++ +E    +  M+  G 
Sbjct: 457 LSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG- 515

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT------------- 178
             PD FT  ++I+AY   G++EK  + +NE    GV  D+ T ++L              
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAK 575

Query: 179 -------------------------------------KSYGRAGMYDKMRSVMDFMQKRF 201
                                                K +   GM  +   V + M  + 
Sbjct: 576 RLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKN 635

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P    YNI+I    +AG I K    +K+M   G   +++T  +LV A  K G + +++
Sbjct: 636 HKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELN 695

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           S++  V  S  + +      ++    + G+++ + ++   M +   +P+ I+
Sbjct: 696 SVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 132/284 (46%), Gaps = 19/284 (6%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL---GIECSAVTYNTIIDGYGKAKK-F 116
           C      + +++KS   + R  LI+K L+ +      G     ++YN ++D   ++K+  
Sbjct: 130 CYSTSSVFDLVVKS---YSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNI 186

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
              E+ F  M+ES    P++FT N +I  +  +GNI+     +++    G   ++ T N 
Sbjct: 187 SFAENVFKEMLES-QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNT 245

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   Y +    D    ++  M  +   P +++YN+VI    + G ++++     +M  RG
Sbjct: 246 LIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG 305

Query: 237 MKPNSITYCSLVSAYSKAG-----LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
              + +TY +L+  Y K G     L+M  + +LR      VI     +  +I +  +AG+
Sbjct: 306 YSLDEVTYNTLIKGYCKEGNFHQALVMHAE-MLRHGLTPSVIT----YTSLIHSMCKAGN 360

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
           + +  E    M+ R   P+  T+ T++  ++  G M EA + L 
Sbjct: 361 MNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLR 404



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 51/232 (21%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT--------------------- 178
           N ++ +  +   I K   W N      ++    TL+ILT                     
Sbjct: 53  NLLLKSQNDQALILKFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLD 112

Query: 179 -----------------------------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
                                        KSY R  + DK  S++   Q   F P V++Y
Sbjct: 113 DEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSY 172

Query: 210 NIVIE-TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           N V++ T     +I   E  FK+M    + PN  TY  L+  +  AG I    ++  ++E
Sbjct: 173 NAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKME 232

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
               + +   +N +I  Y +   ++   +L  +M  +   P+ I++  +I  
Sbjct: 233 TKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284


>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 821

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 150/315 (47%), Gaps = 5/315 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +PE+A  LF+ M    +KP+   Y++L+SA+ ++G ++ A +   +M +     PDV+ +
Sbjct: 438 EPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEM-THERIVPDVFAF 496

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + LI    K  + D   +I   M  L I+   +T+N +I   GKAK       +   M E
Sbjct: 497 NALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTE 556

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             G  PD  + N++I A G SG+  K  + + E    G++    T N L   YG +  +D
Sbjct: 557 IYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALI--YGASRSHD 614

Query: 189 KMRS--VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
              S  ++D M +    P   T N +I    +   +    E  +K K  G+ P+++T+ +
Sbjct: 615 LAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNT 674

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
            + A  K     K+  +L ++E+  +       N I+   G+ G ++ M   F    E+ 
Sbjct: 675 FIDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHEKR 734

Query: 307 CVPDNITFATMIQAY 321
             PD++TF+ +I+ Y
Sbjct: 735 LEPDSVTFSLLIENY 749



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 167/373 (44%), Gaps = 50/373 (13%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +  LG+ ++  +A      M  + ++P++  Y+AL+   G+ GL   A S    M  + +
Sbjct: 319 ITALGRLERYSEAERSLIWMREEHIQPNIYTYSALIETLGKGGLCVRALSQFRRMSRIDN 378

Query: 61  CKPDVYTYSILIKSCTKFHRFDL-----IEKILAEMSYLGIECSAVTYNTIIDGYGKA-- 113
             P+  TY+ +IK  ++  R D         +L EM+  G     VTY T+ID + K   
Sbjct: 379 IAPNTVTYNAVIKIVSRCKRNDCGGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRME 438

Query: 114 -----KKFEEMESS--------FSAMVESGGCH--------------------PDIFTLN 140
                K F+EM+ +        +S+++ S  C                     PD+F  N
Sbjct: 439 PERALKLFQEMKEANVKPNNYCYSSLI-SAFCRAGYVERALAIFEEMTHERIVPDVFAFN 497

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           ++I  +G    ++K  + Y+    + ++ D  T N L  + G+A    +    M  M + 
Sbjct: 498 ALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEI 557

Query: 201 F-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AG 255
           +   P   +YN +I+  GK+G   K  E F++M+ +G++P ++T+ +L+   S+    A 
Sbjct: 558 YGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAA 617

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
               VD +L++  N D        N +ISA  +  D+    E+    K+    PDN+TF 
Sbjct: 618 SFKIVDLMLQEGLNPDAYT----MNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFN 673

Query: 316 TMIQAYNALGMTE 328
           T I A   L  +E
Sbjct: 674 TFIDAVGKLDSSE 686



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 128/259 (49%), Gaps = 5/259 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK +Q ++A  +++ M    ++P    + AL+SA G++     A   + DM  +    P
Sbjct: 503 FGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTP 562

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D ++Y+ LI +C K   F    ++  EM   GI    VT+N +I  YG A +  ++ +SF
Sbjct: 563 DRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALI--YG-ASRSHDLAASF 619

Query: 124 SA--MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               ++   G +PD +T+N++ISA     ++    +   +F  +GV  D  T N    + 
Sbjct: 620 KIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFIDAV 679

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+    +KM  ++  M+ R   P+ VT N ++   G+ G I+ ME  F     + ++P+S
Sbjct: 680 GKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHEKRLEPDS 739

Query: 242 ITYCSLVSAYSKAGLIMKV 260
           +T+  L+  Y    L+ K 
Sbjct: 740 VTFSLLIENYVSHHLLDKA 758



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWY 159
            +++  I   G+ +++ E E S   M E     P+I+T +++I   G  G  +  + ++ 
Sbjct: 313 ASWSIYITALGRLERYSEAERSLIWMREEH-IQPNIYTYSALIETLGKGGLCVRALSQFR 371

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYD-----KMRSVMDFMQKRFFFPTVVTYNIVIE 214
               +  +  +  T N + K   R    D     +  S++  M  +   P VVTY  +I+
Sbjct: 372 RMSRIDNIAPNTVTYNAVIKIVSRCKRNDCGGITRAMSLLREMATKGCIPDVVTYATLID 431

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            F K    E+  + F++MK   +KPN+  Y SL+SA+ +AG + +  +I  ++ +  ++ 
Sbjct: 432 AFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVP 491

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           D   FN +I  +G+   V+K  E++  M++    PD ITF  +I A
Sbjct: 492 DVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISA 537



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 113/248 (45%), Gaps = 13/248 (5%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK---WY 159
           +N  +D   K  K  E    F +M  S     D+ + +  I+A G      + E+   W 
Sbjct: 280 WNYTMDALLKGGKARECLDMFLSM-PSNEVKRDVASWSIYITALGRLERYSEAERSLIWM 338

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGK 218
            E +   ++ +I T + L ++ G+ G+  +  S    M +     P  VTYN VI+   +
Sbjct: 339 REEH---IQPNIYTYSALIETLGKGGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSR 395

Query: 219 A-----GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
                 G I +     ++M  +G  P+ +TY +L+ A+SK     +   + ++++ ++V 
Sbjct: 396 CKRNDCGGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVK 455

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            +   ++ +ISA+ +AG VE+   +F  M     VPD   F  +I  +  L   + A  +
Sbjct: 456 PNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEI 515

Query: 334 ENKMIAMK 341
            ++M  ++
Sbjct: 516 YDRMRKLQ 523


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 151/316 (47%), Gaps = 2/316 (0%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C Q E    +F++M+++G+KP++  Y AL+ AY   G+  EAF     +K  +  +PDV 
Sbjct: 343 CGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQ-NGLRPDVV 401

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +Y+ L+ +  +  + +   ++  EM     + + V+YN +ID YG A  F+E  S    M
Sbjct: 402 SYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEM 461

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E  G  PD+ +++++++A G      K++         G++ +I   N    SY   G 
Sbjct: 462 -EKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGD 520

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y+K   +   M      P  VTYNI+I    K G   +  ++F+ M    +      Y S
Sbjct: 521 YEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSS 580

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+ +Y K   + + +S    ++ S    D   +  +I AY   G    + +LF  M+   
Sbjct: 581 LICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNA 640

Query: 307 CVPDNITFATMIQAYN 322
            +PD I  +++++A N
Sbjct: 641 ILPDAIICSSLMEALN 656



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 166/371 (44%), Gaps = 37/371 (9%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q +QA  LF  M     KP  D+Y +L++A+ ++GL   A + ++DM   +   P   TY
Sbjct: 168 QVDQARGLFFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDMLRAA-IPPSRATY 226

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG------YGKAKKFEEM--- 119
           + ++ +C     +    ++  +M   G+    VT+N ++        Y KA  + EM   
Sbjct: 227 NNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYFEMMKG 286

Query: 120 ----ESSFS------AMVESGG-----------------CHPDIFTLNSMISAYGNSGNI 152
                 +F+       +V+ G                  C PD+ T  S+I +Y   G +
Sbjct: 287 ANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQV 346

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           E  +  ++     GVK +I + N L  +Y   GM+ +   +   +++    P VV+Y  +
Sbjct: 347 ENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTL 406

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           +  +G++   EK  E F +M+    KPN ++Y +L+ AY  AG+  +  S+L ++E   +
Sbjct: 407 LNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGI 466

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
             D    + +++A G+     K+  +    K R    + + + + I +Y + G  E A  
Sbjct: 467 PPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALK 526

Query: 333 LENKMIAMKEN 343
           L   M+A   N
Sbjct: 527 LYATMMASNVN 537



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 140/295 (47%), Gaps = 2/295 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  QPE+A  +F  M  +  KP+   Y AL+ AYG +G+  EA S +++M+      PD
Sbjct: 411 GRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEK-DGIPPD 469

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V + S L+ +C +  +   I+ +L    + GIE + V YN+ I  Y     +E+    ++
Sbjct: 470 VVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYA 529

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+ S   +PD  T N +IS     G   +  K++ +   + +    +  + L  SY + 
Sbjct: 530 TMMASN-VNPDAVTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQ 588

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
               +  S    M+    FP V+TY  +I+ +   G    + + FK+M+   + P++I  
Sbjct: 589 DKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAILPDAIIC 648

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
            SL+ A +K     +V  +++ + +  + L+   +  II++     D +   E+ 
Sbjct: 649 SSLMEALNKGNQYGRVLQLMKFMHDQCIQLNQKAYFEIIASCSMLRDWKTASEII 703



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+ +  MI  +     +++    + E      K D    N L  ++ RAG++    ++M
Sbjct: 154 DIYGM--MIQLHARHNQVDQARGLFFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIM 211

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M +    P+  TYN V+   G AG+ +K  E  KKM   G+ P+ +T+  ++SA+   
Sbjct: 212 DDMLRAAIPPSRATYNNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNG 271

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER--HCVPDNI 312
               K       ++ +++  DT   N +I    + G      +L  +M+E+   C PD +
Sbjct: 272 FQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVV 331

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           T+ ++I +Y   G  E  + + + M+A
Sbjct: 332 TYTSIIHSYYVCGQVENCKAVFDMMVA 358


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 163/338 (48%), Gaps = 7/338 (2%)

Query: 2   VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           V++GK K P +A  +F  ++ +G KP++  YT LV+A  +  L       I+ ++  +  
Sbjct: 22  VLIGKGK-PREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEE-NGM 79

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           KPD   ++ +I + ++        K+  +M   G + +  T+NT+I GYG A K EE   
Sbjct: 80  KPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEA-L 138

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNILTK 179
                ++ GG  P+  T N ++ A+ N  N+E  E W   + ++  G++ D  T N L +
Sbjct: 139 KLLEFLQDGGVKPNQRTYNILVRAWCNKENME--EAWNMVYKMVASGMQPDAVTYNTLAR 196

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +Y   G   +   ++  M  R   P   T +I++  + K G++     +  +MK  G+ P
Sbjct: 197 AYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLP 256

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N   + SL+  +        VD +L  +E + V  D   F+ I++A+  AG ++K  E+F
Sbjct: 257 NLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIF 316

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             M +    PD   F+ + + Y   G  E A+++   M
Sbjct: 317 NDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSM 354



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 152/310 (49%), Gaps = 2/310 (0%)

Query: 29  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88
           V   T L++     G   EA S  N +      KP + TY+ L+ + T+   F  I +++
Sbjct: 13  VRSRTKLMNVLIGKGKPREAHSIFNSLMDEGH-KPTLITYTTLVAALTRQKLFKSILRLI 71

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           +++   G++  ++ +N+II+ + ++   +E    F  M ESG C P   T N++I  YGN
Sbjct: 72  SKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESG-CKPTTSTFNTLIKGYGN 130

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +G  E+  K        GVK + +T NIL +++      ++  +++  M      P  VT
Sbjct: 131 AGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVT 190

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +   + + G   + EE   +M +R + PN  T   +V+ Y K G ++     + +++
Sbjct: 191 YNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMK 250

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              V+ +   FN +I  +    D E + E+   M+E    PD +TF+T++ A+++ G  +
Sbjct: 251 ELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMD 310

Query: 329 AAQNLENKMI 338
             + + N M+
Sbjct: 311 KCKEIFNDMV 320



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 153/350 (43%), Gaps = 35/350 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  LF  M   G KP+   +  L+  YG +G  +EA   +  ++     KP+  TY+I
Sbjct: 100 KEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQD-GGVKPNQRTYNI 158

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEM-------- 119
           L+++       +    ++ +M   G++  AVTYNT+   Y   G+  + EEM        
Sbjct: 159 LVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRR 218

Query: 120 -----------------------ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
                                   S F   ++  G  P++F  NS+I  + ++ + E ++
Sbjct: 219 VTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVD 278

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           +        GV+ D+ T + +  ++  AG  DK + + + M K    P +  ++I+ + +
Sbjct: 279 EVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGY 338

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            +AG  EK E     M+  G+ PN +   +++S +  AG +     +  ++    V  + 
Sbjct: 339 VRAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNL 398

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
             +  +I  YG+A    K  EL   M+E+   P   T   +  A+ A+G+
Sbjct: 399 KTYETLIWGYGEAKQPLKAEELLQVMEEKGVFPKKGTMQLIADAWRAIGL 448


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 161/336 (47%), Gaps = 17/336 (5%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  M+  G+ P V  YT+++ A  ++  +D+A   +  M S +  +P+  TY+ +
Sbjct: 245 KACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMIS-NGFQPNKVTYNCM 303

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I   +   ++     +  EM+  G+  + VT N+ +    K  K +E    F +M   G 
Sbjct: 304 IHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGH 363

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P++ T + ++  Y   G    M   +N     G+ AD +  NI+  +YG+ GM D+  
Sbjct: 364 -KPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETM 422

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +   MQ++   P   TY IVI  F + G +    + F +M   G+KP  I Y SL+  +
Sbjct: 423 LIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGF 482

Query: 252 SKAGLIMKVDSIL-----RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF---LTMK 303
              G ++K   ++     R +   +++    FFN II++  + G V +  ++F   + + 
Sbjct: 483 CMHGNLVKAKELVSEMMSRGIPRPNIV----FFNSIINSLCKEGRVVEAHDIFDFVIHIG 538

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           ER   PD ITF ++I  Y  +G  E A  + + MI+
Sbjct: 539 ER---PDVITFNSLIDGYGLVGKIEKAFGVLDAMIS 571



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 161/339 (47%), Gaps = 7/339 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + ++P     LF   L  GLK  V V + L+     +   D+  + +         +PD 
Sbjct: 131 RTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLLLHRMPELGVEPDT 190

Query: 66  YTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            +Y+ ++K+  +  R     DL+  ++ +    G   + VTYNT+I G  +  +  +  +
Sbjct: 191 ISYNTVVKTLCEDSRSQRALDLLHTMVKKSG--GCSPNVVTYNTVIHGLFREGEVSKACN 248

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M++ G   PD+ T  S+I A   +  ++K E    +    G + +  T N +   Y
Sbjct: 249 LFHEMMQQG-VVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGY 307

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
             +G + +   +   M  +   P +VT N  + +  K G  ++  E+F  M  +G KPN 
Sbjct: 308 SISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNL 367

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  L+  Y+  G  + + ++   +E + ++ D   FN +I AYG+ G +++   +F  
Sbjct: 368 VTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQ 427

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           M+E+  +PD  T+  +I A++ +G    A +  N+MIAM
Sbjct: 428 MQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAM 466



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 159/366 (43%), Gaps = 42/366 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M  +G+     V+  ++ AYG+ G++DE       M+      PD  TY I+I + 
Sbjct: 389 LFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQE-QGVIPDACTYGIVIAAF 447

Query: 76  TKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
           ++  R  D ++K   +M  +G++   + Y+++I G+       + +   S M+  G   P
Sbjct: 448 SRMGRLADAMDK-FNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRP 506

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           +I   NS+I++    G + +    ++    +G + D+ T N L   YG  G  +K   V+
Sbjct: 507 NIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVL 566

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY--- 251
           D M      P VV+YN +I+ + + G I+     F +M  +G+KP +ITY  ++      
Sbjct: 567 DAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFND 626

Query: 252 ----------------------SKAGLIM----------KVDSILRQVENSDVILDTPFF 279
                                 S  G+I+          +  ++ +++   +V  +    
Sbjct: 627 GRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAII 686

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I A  +    E+  ELF ++     VP+  T+  MI+     G  E A N    M +
Sbjct: 687 NTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADN----MFS 742

Query: 340 MKENSG 345
           + E SG
Sbjct: 743 LMEKSG 748



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 131/286 (45%), Gaps = 4/286 (1%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+    +A  +F+ ++  G +P V  + +L+  YG  G +++AF  ++ M S +  +PD
Sbjct: 519 CKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMIS-AGIEPD 577

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V +Y+ LI    +  R D    +  EM   G++ + +TY  I+ G     +    +    
Sbjct: 578 VVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCH 637

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+ESG    DI T   ++     +   ++    + +   M VK +I  +N +  +  + 
Sbjct: 638 EMIESGTTM-DISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMIDAMYKV 696

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              ++ + + D +      P   TY ++I+   K G +E+ +  F  M+  G  P+S   
Sbjct: 697 RKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLL 756

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
             ++    + G I+K  + + +V+   + L+    + +++ + + G
Sbjct: 757 NYIIRVLLEKGEIVKAGNYMFKVDGKRISLEASTVSLLMALFSREG 802



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 75/180 (41%), Gaps = 38/180 (21%)

Query: 198 QKRFFFPTVVTYNIVIE----------------TFGKAG----------------HIEKM 225
           + R   PTV TYNI+++                 F K G                H ++ 
Sbjct: 111 RPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRS 170

Query: 226 EEYFKKMKHR----GMKPNSITYCSLVSAYSKAGLIMKVDSILRQV--ENSDVILDTPFF 279
           ++    + HR    G++P++I+Y ++V    +     +   +L  +  ++     +   +
Sbjct: 171 DDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTY 230

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I    + G+V K   LF  M ++  VPD +T+ ++I A       + A+ +  +MI+
Sbjct: 231 NTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMIS 290


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 153/329 (46%), Gaps = 2/329 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L+  M+  G+ P V  Y+ LVS +   G L+ A   +N+M  + +  PD+YTY+I
Sbjct: 215 DEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEM-VLENINPDIYTYTI 273

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  K  +    E +LA M    +    V Y+T++DGY    +    +  F  M + G
Sbjct: 274 LVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMG 333

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD+   + MI+       +++    + E +   +  D  T   L     ++G    +
Sbjct: 334 -VTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYV 392

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + D M  R   P V+TYN +I+   K GH+++    F KMK + ++PN  T+  L+  
Sbjct: 393 WDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDG 452

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K G +       + +      L+   +  +I+   + G +++   L   M++  C+ D
Sbjct: 453 LCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISD 512

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
            +TF  MI+A+      + A+ L  +MIA
Sbjct: 513 AVTFEIMIRAFFDKDENDKAEKLVREMIA 541



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 102/238 (42%), Gaps = 4/238 (1%)

Query: 2   VMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C   +   A  +F  M   G+ P V  Y+ +++   +   +DEA +   ++    
Sbjct: 309 LMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQ-K 367

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +  PD  TY+ LI    K  R   +  +  EM   G     +TYN +ID   K    +  
Sbjct: 368 NMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRA 427

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            + F+ M +     P+++T   ++      G ++   +++ +    G   +++T  ++  
Sbjct: 428 IALFNKM-KDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMIN 486

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              + G+ D+  ++   M+        VT+ I+I  F      +K E+  ++M  RG+
Sbjct: 487 GLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGL 544



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/342 (18%), Positives = 144/342 (42%), Gaps = 25/342 (7%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           + P   SL  ++ LS+ ++P       +++ +   G +  AFS ++ +  +   +P+  T
Sbjct: 73  RYPTAISLYKQMELSE-VEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGY-QPNTIT 130

Query: 68  YSIL---------IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            + L         +K   +FH     +K+LA+    G   S ++Y  +I+G     K  E
Sbjct: 131 LNTLMKGLCLEGKVKEALRFH-----DKVLAQ----GFRLSGISYGILING---VCKIGE 178

Query: 119 MESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
             ++   +  +E     P++   + +I        +++    Y E    G+  D+ T +I
Sbjct: 179 TRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSI 238

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   +   G  ++   +++ M      P + TY I+++   K G +++ E     M    
Sbjct: 239 LVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKAC 298

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           +  + + Y +L+  Y     +     +   +    V  D   ++ +I+   +   V++  
Sbjct: 299 VNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEAL 358

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            LF  + +++ VPD +T+ ++I      G      +L ++M+
Sbjct: 359 NLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEML 400



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 132/298 (44%), Gaps = 8/298 (2%)

Query: 46  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
           D+A S  N M  V    P  + ++ ++ S     R+     +  +M    +E    T N 
Sbjct: 40  DDAVSQFNHMFHVHP-TPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNI 98

Query: 106 IIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
           II+ +     F ++  +FS +  +   G  P+  TLN+++      G +++  +++++  
Sbjct: 99  IINCFCH---FGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVL 155

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
             G +    +  IL     + G       ++  +++    P VV Y+++I+   K   ++
Sbjct: 156 AQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVD 215

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
           +  + + +M  +G+ P+ +TY  LVS +   G + +   +L ++   ++  D   +  ++
Sbjct: 216 EAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILV 275

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            A  + G V K  E  L +  + CV  D + ++T++  Y  +     A+ +   M  M
Sbjct: 276 DALCKEGKV-KEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQM 332


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 160/341 (46%), Gaps = 2/341 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV LGK +  +    L + M + GLKP+V  +T  +   G++G ++EA+  +  M     
Sbjct: 230 MVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDD-EG 288

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C PDV TY++LI +     + D  +++  +M     +   VTY T++D +   +  + ++
Sbjct: 289 CGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVK 348

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +S M E  G  PD+ T   ++ A   +GN  +     +     G+  ++ T N L   
Sbjct: 349 QFWSEM-EKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICG 407

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             R    D    +   M+     PT  TY + I+ +GK+G      E F+KMK +G+ PN
Sbjct: 408 LLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPN 467

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +   + + + +KAG   +   I   +++  ++ D+  +N ++  Y + G++++  +L  
Sbjct: 468 IVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLS 527

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            M E  C PD I   ++I         + A  +  +M  MK
Sbjct: 528 EMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK 568



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 168/336 (50%), Gaps = 2/336 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L K +   +A  ++  M+ +G +PS+  Y++L+   G+   +D     + +M+++   K
Sbjct: 197 LLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLG-LK 255

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+VYT++I I+   +  + +   +IL  M   G     VTY  +ID    A+K +  +  
Sbjct: 256 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV 315

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M ++G   PD  T  +++  + ++ +++ ++++++E    G   D+ T  IL  +  
Sbjct: 316 FEKM-KTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALC 374

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG + +    +D M+ +   P + TYN +I    +   ++   E F  M+  G+KP + 
Sbjct: 375 KAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAY 434

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY   +  Y K+G  +       +++   +  +    N  + +  +AG   +  ++F  +
Sbjct: 435 TYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGL 494

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           K+   VPD++T+  M++ Y+ +G  + A  L ++M+
Sbjct: 495 KDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM 530



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 142/299 (47%), Gaps = 2/299 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  DG  P V  +T LV A  ++G   EAF T++ M+      P+++TY+ LI    + H
Sbjct: 354 MEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD-QGILPNLHTYNTLICGLLRVH 412

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R D   ++   M  LG++ +A TY   ID YGK+        +F  M ++ G  P+I   
Sbjct: 413 RLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKM-KTKGIAPNIVAC 471

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N+ + +   +G   + ++ +     +G+  D  T N++ K Y + G  D+   ++  M +
Sbjct: 472 NASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMME 531

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P V+  N +I T  KA  +++  + F +MK   +KP  +TY +L++   K G I +
Sbjct: 532 NGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQE 591

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
              +   +       +T  FN +     +  +V    ++   M +  CVPD  T+ T+I
Sbjct: 592 AIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 4/309 (1%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E A  +F  + S G  P V  Y  L+ AYG+SG +DE F    +M S  +C+ +  T++I
Sbjct: 802  EIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM-STHECEANTITHNI 860

Query: 71   LIKSCTKFHRFD-LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            +I    K    D  ++     MS      +A TY  +IDG  K+ +  E +  F  M++ 
Sbjct: 861  VISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDY 920

Query: 130  GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G C P+    N +I+ +G +G  +     +      GV+ D++T ++L       G  D+
Sbjct: 921  G-CRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDE 979

Query: 190  MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-HRGMKPNSITYCSLV 248
                   +++    P VV YN++I   GK+  +E+    F +MK  RG+ P+  TY SL+
Sbjct: 980  GLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI 1039

Query: 249  SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                 AG++ +   I  +++ + +  +   FN +I  Y  +G  E    ++ TM      
Sbjct: 1040 LNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFS 1099

Query: 309  PDNITFATM 317
            P+  T+  +
Sbjct: 1100 PNTGTYEQL 1108



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 155/328 (47%), Gaps = 3/328 (0%)

Query: 13   ASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            A  LFE    D G++P +  Y  L+    ++ +++ A      +KS + C PDV TY+ L
Sbjct: 768  ARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKS-TGCIPDVATYNFL 826

Query: 72   IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
            + +  K  + D + ++  EMS    E + +T+N +I G  KA   ++    +  ++    
Sbjct: 827  LDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRD 886

Query: 132  CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              P   T   +I     SG + + ++ +      G + +    NIL   +G+AG  D   
Sbjct: 887  FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAAC 946

Query: 192  SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++   M K    P + TY+++++     G +++   YFK++K  G+ P+ + Y  +++  
Sbjct: 947  ALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGL 1006

Query: 252  SKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K+  + +   +  +++ S  I  D   +N +I   G AG VE+ G+++  ++     P+
Sbjct: 1007 GKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPN 1066

Query: 311  NITFATMIQAYNALGMTEAAQNLENKMI 338
              TF  +I+ Y+  G  E A  +   M+
Sbjct: 1067 VFTFNALIRGYSLSGKPEHAYAVYQTMV 1094



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K  +  +A  LFE ML  G +P+  +Y  L++ +G++G  D A +    M      +P
Sbjct: 901  LSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVK-EGVRP 959

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            D+ TYS+L+       R D       E+   G+    V YN II+G GK+ + EE    F
Sbjct: 960  DLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLF 1019

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            + M  S G  PD++T NS+I   G +G +E+  K YNE    G++ ++ T N L + Y  
Sbjct: 1020 NEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSL 1079

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTY 209
            +G  +   +V   M    F P   TY
Sbjct: 1080 SGKPEHAYAVYQTMVTGGFSPNTGTY 1105



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 161/402 (40%), Gaps = 74/402 (18%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +  +A  +F  +   GL P    Y  ++  Y + G +DEA   +++M   + C+P
Sbjct: 478 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMME-NGCEP 536

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV   + LI +  K  R D   K+   M  + ++ + VTYNT++ G GK  K +E    F
Sbjct: 537 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 596

Query: 124 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
             MV+ G                                  GC PD+FT N++I     +
Sbjct: 597 EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKN 656

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY-DKMRSVMDFM------QKRFF 202
           G +++   ++++   + V  D  TL  L     +A +  D  + + +F+          F
Sbjct: 657 GQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLF 715

Query: 203 FPTVVTYNI------------------------------VIETFGKAGHIEKMEEYFKKM 232
           +  ++   +                              +I    K  ++      F+K 
Sbjct: 716 WEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKF 775

Query: 233 -KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
            K  G++P   TY  L+    +A +I     +  QV+++  I D   +N ++ AYG++G 
Sbjct: 776 TKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGK 835

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           ++++ EL+  M    C  + IT   +I      G  + A +L
Sbjct: 836 IDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDL 877



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 137/327 (41%), Gaps = 2/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+ + +F++M    +K   + Y  +  +    G L +A   +  M+       + Y+Y+ 
Sbjct: 135 EEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVL-NAYSYNG 193

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K        ++   M   G   S  TY++++ G GK +  + +      M E+ 
Sbjct: 194 LIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM-ETL 252

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+++T    I   G +G I +  +     +  G   D+ T  +L  +   A   D  
Sbjct: 253 GLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA 312

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + V + M+     P  VTY  +++ F     ++ +++++ +M+  G  P+ +T+  LV A
Sbjct: 313 KEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDA 372

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             KAG   +    L  + +  ++ +   +N +I    +   ++   ELF  M+     P 
Sbjct: 373 LCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPT 432

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
             T+   I  Y   G + +A     KM
Sbjct: 433 AYTYIVFIDYYGKSGDSVSALETFEKM 459



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 3/227 (1%)

Query: 114 KKFEEMESSFSAMVESGGCHPDIFT---LNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
           K F + +SSFS      G    + T    N M+ A    G +E+M   ++      +K D
Sbjct: 93  KSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRD 152

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
             T   + KS    G   +    +  M++  F     +YN +I    K+    +  E ++
Sbjct: 153 TNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYR 212

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           +M   G +P+  TY SL+    K   I  V  +L+++E   +  +   F   I   G+AG
Sbjct: 213 RMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAG 272

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            + +  E+   M +  C PD +T+  +I A       + A+ +  KM
Sbjct: 273 KINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM 319


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 150/310 (48%), Gaps = 2/310 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E    L+  ML  GLKP+V  Y  L+S   ++G + E  + +++M S     PD +TYSI
Sbjct: 240 ESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMAS-RKMVPDGFTYSI 298

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L    ++      +  +  E    G++  A T + +++G  K  K  + E     +V SG
Sbjct: 299 LFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSG 358

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
                +   N++I+ Y   G++E     + +     ++ D  T N L    G+     + 
Sbjct: 359 LLQTTVI-YNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEA 417

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M+K    P+V T+N +I+ +G+AG +EK       M+ +G+KPN ++Y S+V+A
Sbjct: 418 HDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNA 477

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + K G I++  +IL  +   DV+     +N II AY + G  ++   L   MK     P 
Sbjct: 478 FCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPS 537

Query: 311 NITFATMIQA 320
            +T+  +I+ 
Sbjct: 538 IVTYNLLIKG 547



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 137/283 (48%), Gaps = 5/283 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNTIIDGYGKAKKFEEME 120
           +PD +T++  +++C      D    +L  M   G    +A +YN +I G  KA    +  
Sbjct: 149 RPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLWKAGTDCDAV 208

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M E     P+  T N+MI  +   G++E   + +++    G+K ++ T N+L   
Sbjct: 209 KLFDEMPEKA-VVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSG 267

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             RAG   +  +V+D M  R   P   TY+I+ +   + G  + M   F++   +G+K  
Sbjct: 268 LCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIG 327

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + T   L++   K G I K + +L+ + NS ++  T  +N +I+ Y Q GD+E    +F 
Sbjct: 328 AYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQ 387

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
            MK R   PD+IT+  +I   N LG  E      + +I M++N
Sbjct: 388 QMKSRLIRPDHITYNALI---NGLGKVERITEAHDLVIEMEKN 427



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 155/357 (43%), Gaps = 35/357 (9%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           FE++++   +P    +   V A   +G LDEA   +  M       P+ ++Y+++I    
Sbjct: 140 FELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSYNVVIAGLW 199

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE-------- 128
           K        K+  EM    +  + +TYNT+IDG+ K    E     +S M+         
Sbjct: 200 KAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVI 259

Query: 129 ------SGGCH--------------------PDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
                 SG C                     PD FT + +   +  +G+ + M   + E 
Sbjct: 260 TYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEES 319

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              GVK    T +IL     + G   K   V+  +       T V YN +I  + + G +
Sbjct: 320 VKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDL 379

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           E     F++MK R ++P+ ITY +L++   K   I +   ++ ++E + V      FN +
Sbjct: 380 EGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTL 439

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLENKMI 338
           I AYG+AG +EK   +   M+E+   P+ +++ +++ A+   G + EA   L++  I
Sbjct: 440 IDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFI 496



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 157/342 (45%), Gaps = 39/342 (11%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  +  +A  + + +++ GL  +  +Y  L++ Y Q G L+ AFS    MKS 
Sbjct: 333 ILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKS- 391

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              +PD  TY+ LI    K  R      ++ EM   G+  S  T+NT+ID YG+A + E+
Sbjct: 392 RLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEK 451

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM---------------EKWYN--- 160
                S M E G   P++ +  S+++A+  +G I +                 + YN   
Sbjct: 452 CFIILSDMQEKG-LKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAII 510

Query: 161 -----------------EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                            +    GV   I T N+L K   +     +   ++D ++     
Sbjct: 511 DAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLA 570

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P V++YN +I       + ++  E  K+M   G+KP+  TY  L S+   AG + +++++
Sbjct: 571 PDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENL 630

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            +Q+ + DV+  +  +N ++ AY + G+  K+  L   M ++
Sbjct: 631 YQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDK 672



 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 64/152 (42%), Gaps = 2/152 (1%)

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-PNSIT 243
           G +  +R   + +      P   T+N  ++    AG +++     ++M   G   PN+ +
Sbjct: 131 GRHADVRGAFELLVAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFS 190

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +++   KAG       +  ++    V+ +   +N +I  + + GD+E    L+  M 
Sbjct: 191 YNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQML 250

Query: 304 ERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
                P+ IT+  ++      G M E A  L+
Sbjct: 251 RHGLKPNVITYNVLLSGLCRAGRMGETAAVLD 282


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 151/328 (46%), Gaps = 8/328 (2%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F +M+     PS+  +  L+S   +     + FS  N M+ +S    D  T +IL+    
Sbjct: 57  FHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMR-LSGLSSDRCTLNILLNCLC 115

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
             +R        A +   G   + VTYNT+I G     +  E    F  M +  GC PD+
Sbjct: 116 NVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM-QKLGCTPDV 174

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEF------NLMGVKADIQTLNILTKSYGRAGMYDKM 190
            T  ++I     +GNI    K + E         +  K ++ T NI+     + G  D+ 
Sbjct: 175 VTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEA 234

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + + + M+ +   P++++YN +I  F  AG  E+ +    +M  +G++P+ +T+  L+  
Sbjct: 235 KQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDT 294

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K G +++   +L  +  S ++ D   +N +I  +   GD+    ELF++M  + C PD
Sbjct: 295 LCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPD 354

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
            I++  +I  Y+     E A  L N+M+
Sbjct: 355 VISYNVLINGYSKTLKVEEAMKLYNEML 382



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 167/355 (47%), Gaps = 39/355 (10%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  + ++A  LFE M + G+ PS+  Y +L+  +  +G  +E+   +++M   
Sbjct: 220 IIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLD- 278

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              +PD+ T+++LI +  K  +    +K+L  M   GI    VTYN++I+G+        
Sbjct: 279 QGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNS 338

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F +M  S GC PD+ + N +I+ Y  +  +E+  K YNE  L+G + ++ T + L 
Sbjct: 339 ARELFVSM-PSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLL 397

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY----------------------------- 209
           K    AG  D  + +   M+         TY                             
Sbjct: 398 KGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFK 457

Query: 210 ------NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
                 N +I+   KAG +E   E F+K+ + G +PN +TY  ++  + + G + K + +
Sbjct: 458 LEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVL 517

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           ++++E +    D   +N ++  + ++  +E++ +L   M ++   PD IT + ++
Sbjct: 518 IQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVV 572



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 67/116 (57%), Gaps = 3/116 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E A  LFE + ++G +P+V  YT ++  + + G +D+A   I  M++ + C 
Sbjct: 469 GLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEA-NGCT 527

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           PD+ TY+ L++   + ++ + + ++L  M+   +   A+T + ++D   K +K++E
Sbjct: 528 PDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQE 583


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 127/267 (47%), Gaps = 1/267 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DVYTY+ +I  C      D    +  EM    IE +  TY  +++   K         ++
Sbjct: 209 DVYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTY 268

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M + G C P++ T N++I  YG  G  E+  K        GV+  ++T N L  +   
Sbjct: 269 NHMRQDGAC-PNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNM 327

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   +  +V   M    + P   TYN +I  +GKAG ++K+ E F++M H+G + + IT
Sbjct: 328 CGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVIT 387

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL+SA  KAG       +  ++     I +T  +N +I+A  Q    EK  E+F  M+
Sbjct: 388 YSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQ 447

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAA 330
           +  C PD +TF  +I +Y   G    A
Sbjct: 448 KGGCTPDVVTFTALISSYEKGGQWRRA 474



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 136/301 (45%), Gaps = 2/301 (0%)

Query: 29  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88
           V  YTA++S       +D A     +M+ V + + +V+TY+ L+  C K     L     
Sbjct: 210 VYTYTAMISMCIYQQDVDRAMDLAKEMR-VRNIERNVHTYTALMNVCIKCGNCPLALDTY 268

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
             M   G   + VTYNT+ID YGK   +E+     + M ++ G  P + T N++I A   
Sbjct: 269 NHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLM-KTEGVEPVLRTYNTLIIACNM 327

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G   +    Y      G   +  T N L  +YG+AG  DK+  V   M  +    +V+T
Sbjct: 328 CGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVIT 387

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y+ +I    KAG  E   E F +M   G  PN++TY SL++A ++     K   +  Q++
Sbjct: 388 YSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQ 447

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
                 D   F  +IS+Y + G   +    +  M+ + C PD I F  +I      G+  
Sbjct: 448 KGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETGVIW 507

Query: 329 A 329
           A
Sbjct: 508 A 508



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 2/193 (1%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C QP +A  +++ ML +G  P+   Y AL+SAYG++G LD+      +M     C+  V 
Sbjct: 328 CGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVH-KGCERSVI 386

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TYS LI +C K  +++L  ++  EM+  G   + VTYN++I    +  ++E+    F  M
Sbjct: 387 TYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQM 446

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            + GGC PD+ T  ++IS+Y   G   +    Y +  L   K D    N +  +    G+
Sbjct: 447 -QKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETGV 505

Query: 187 YDKMRSVMDFMQK 199
               R  +   Q+
Sbjct: 506 IWAQRKALALFQQ 518



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 2/252 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC     A   +  M  DG  P+V  Y  L+  YG+ GL ++    +  MK+    +P +
Sbjct: 257 KCGNCPLALDTYNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKT-EGVEPVL 315

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ LI +C    +      +   M   G   +A TYN +I  YGKA + +++   F  
Sbjct: 316 RTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQE 375

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           MV  G C   + T +S+ISA   +G  E   + +NE    G   +  T N L  +  +  
Sbjct: 376 MVHKG-CERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGA 434

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            ++K   V + MQK    P VVT+  +I ++ K G   +    +++M+ +  KP++I + 
Sbjct: 435 QWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFN 494

Query: 246 SLVSAYSKAGLI 257
           +++    + G+I
Sbjct: 495 AIIDTLWETGVI 506



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 37/186 (19%)

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D+   +   M+ R     V TY  ++    K G+     + +  M+  G  PN +TY +L
Sbjct: 227 DRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTL 286

Query: 248 VSAYSKAGL---------IMK---VDSILRQVENSDVI------------------LDTP 277
           +  Y K GL         +MK   V+ +LR   N+ +I                  LD  
Sbjct: 287 IDVYGKMGLWEQGIKVLTLMKTEGVEPVLR-TYNTLIIACNMCGQPREAMAVYKRMLDEG 345

Query: 278 F------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           +      +N +ISAYG+AG ++K+ E+F  M  + C    IT++++I A    G  E A 
Sbjct: 346 YSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELAL 405

Query: 332 NLENKM 337
            L N+M
Sbjct: 406 ELFNEM 411


>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1006; Flags: Precursor
 gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 723

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 154/307 (50%), Gaps = 3/307 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +FE M   G+K S DV+  LV ++   GL +EA     +M+     + +   Y+ L+ + 
Sbjct: 331 IFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEK-KGIRSNTIVYNTLMDAY 389

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K +  + +E +  EM   G++ SA TYN ++D Y +  + + +E+    M E  G  P+
Sbjct: 390 NKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREM-EDLGLEPN 448

Query: 136 IFTLNSMISAYGNSGNIEKME-KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           + +   +ISAYG +  +  M    +     +G+K    +   L  +Y  +G ++K  +  
Sbjct: 449 VKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASF 508

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + M K    P+V TY  V++ F ++G   K+ E +K M    +K   ITY +L+  ++K 
Sbjct: 509 EEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQ 568

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           GL ++   ++ +     +      +N +++AY + G   K+ +L   M   +  PD+IT+
Sbjct: 569 GLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITY 628

Query: 315 ATMIQAY 321
           +TMI A+
Sbjct: 629 STMIYAF 635



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 152/307 (49%), Gaps = 1/307 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A ++   M   G++ +  VY  L+ AY +S  ++E      +M+     KP   TY+I
Sbjct: 361 EEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRD-KGLKPSAATYNI 419

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +  + D++E +L EM  LG+E +  +Y  +I  YG+ KK  +M +     ++  
Sbjct: 420 LMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKV 479

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P   +  ++I AY  SG  EK    + E    G+K  ++T   +  ++ R+G   K+
Sbjct: 480 GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKL 539

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M +     T +TYN +++ F K G   +  +   +    G++P+ +TY  L++A
Sbjct: 540 MEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNA 599

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y++ G   K+  +L+++   ++  D+  ++ +I A+ +  D ++       M +   VPD
Sbjct: 600 YARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPD 659

Query: 311 NITFATM 317
             ++  +
Sbjct: 660 PRSYEKL 666



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 142/307 (46%), Gaps = 4/307 (1%)

Query: 29  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKI 87
           V +Y A +S    S   D+A+     M  + +  PD  T +ILI +  K  R    + +I
Sbjct: 273 VRLYNAAISGLSASQRYDDAWEVYEAMDKI-NVYPDNVTCAILITTLRKAGRSAKEVWEI 331

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             +MS  G++ S   +  ++  +   +  +E        +E  G   +    N+++ AY 
Sbjct: 332 FEKMSEKGVKWSQDVFGGLVKSFCD-EGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYN 390

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            S +IE++E  + E    G+K    T NIL  +Y R    D + +++  M+     P V 
Sbjct: 391 KSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVK 450

Query: 208 TYNIVIETFGKAGHIEKME-EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           +Y  +I  +G+   +  M  + F +MK  G+KP+S +Y +L+ AYS +G   K  +   +
Sbjct: 451 SYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEE 510

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +    +      +  ++ A+ ++GD  K+ E++  M         IT+ T++  +   G+
Sbjct: 511 MCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGL 570

Query: 327 TEAAQNL 333
              A+++
Sbjct: 571 YIEARDV 577



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 1/153 (0%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK-MEEY 228
           D++  N        +  YD    V + M K   +P  VT  I+I T  KAG   K + E 
Sbjct: 272 DVRLYNAAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEI 331

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F+KM  +G+K +   +  LV ++   GL  +   I  ++E   +  +T  +N ++ AY +
Sbjct: 332 FEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNK 391

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +  +E++  LF  M+++   P   T+  ++ AY
Sbjct: 392 SNHIEEVEGLFTEMRDKGLKPSAATYNILMDAY 424


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 146/346 (42%), Gaps = 66/346 (19%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV---------------SDCK------ 62
           G KP V VYT L  A+ ++G L +A     ++ S                +DC       
Sbjct: 190 GFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFL 249

Query: 63  ---------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113
                    PDV+TY+ILI    K  + D   ++L EM   G+    VT+N+I+DG  KA
Sbjct: 250 KEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKA 309

Query: 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
            KFE   S  + M E   C P   T N++IS      N+++ +   +EF   G       
Sbjct: 310 GKFERAHSLLAVMAERN-CRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSG------- 361

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
                                       F P VVTY+I+ +   K G I++  E  K+M 
Sbjct: 362 ----------------------------FVPDVVTYSILADGLCKRGRIDEAFELVKEMS 393

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +G  PN +TY +L+    KA    K   +L  + +S  + D   +  I+    + G ++
Sbjct: 394 GKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLD 453

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           K  ++   M +R C P  IT+  +++     G  + A ++  +M++
Sbjct: 454 KALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS 499



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 137/305 (44%), Gaps = 5/305 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E+A  L E ++S G  P V  YT +V    + G LD+A   +  M     C P
Sbjct: 411 LCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLK-RGCTP 469

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V TY+ L++   +  R D    I  EM        A+ Y ++++GY K+ + +E +   
Sbjct: 470 SVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVV 529

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             +  +    P I   N+++  Y   G ++++   + +    G   +I+T NI+     +
Sbjct: 530 DGIRGT----PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCK 585

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+    ++ M      P VV+YNI+I+   KA   ++  +   +M   G+ P+++T
Sbjct: 586 HGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVT 645

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L++ + K         IL+ +  + V  D   +N +IS   Q   +    EL   M 
Sbjct: 646 YNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEML 705

Query: 304 ERHCV 308
              CV
Sbjct: 706 RNGCV 710



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 149/356 (41%), Gaps = 40/356 (11%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G CK    E+A  L  VM     +PS   Y  L+S   +   +D A   +++  S S
Sbjct: 302 IMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVS-S 360

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PDV TYSIL     K  R D   +++ EMS  G   + VTYNT+IDG  KA K E+ 
Sbjct: 361 GFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKA 420

Query: 120 ESSFSAMVESG----------------------------------GCHPDIFTLNSMISA 145
                ++V SG                                  GC P + T  +++  
Sbjct: 421 YELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEG 480

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
              +G +++    + E       AD      L   Y ++    + + V+D ++     P 
Sbjct: 481 LCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGT---PY 537

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           +  YN +++ + K G ++++   F+ M  RG  PN  TY  ++    K G + +    L 
Sbjct: 538 IDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLE 597

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            + ++  + D   +N II    +A   ++  ++   M +    PD +T+ T++  +
Sbjct: 598 SMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF 653



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 154/340 (45%), Gaps = 9/340 (2%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G CK+   ++   +FE M   G  P++  Y  ++    + G +DEAF  +  M S  
Sbjct: 544 LMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG 603

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C PDV +Y+I+I    K  +     ++L +M   GI   AVTYNT++  + K ++F++ 
Sbjct: 604 -CVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDA 662

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILT 178
                 M+++G   PD  T N++IS    +  +    +  +E    G V +   T N + 
Sbjct: 663 VGILKNMIKAG-VDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTII 721

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               + G   +   +MD M         VTYNI I+   K G +++      +M      
Sbjct: 722 DRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMD---TL 778

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQ-VENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            + ++Y +++    KA  + +   + R+ V    + + +  FN +I A+ +   +++   
Sbjct: 779 RDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALT 838

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           L   M +R C P  IT+  +I     L   + A  L ++M
Sbjct: 839 LLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEM 878



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 137/337 (40%), Gaps = 6/337 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L + K P+ A + F      G K S       +    ++G  D   +    M       
Sbjct: 99  VLQRLKDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGY-A 157

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD YTY ++IKS  + ++ D    +L +    G +     Y  +   + K  + ++    
Sbjct: 158 PDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEI 217

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  +       PD    N++I  +    + +   ++  E N   V  D+ T NIL     
Sbjct: 218 FRNIPS-----PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLC 272

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A   DK   ++  M  R   P  VT+N +++   KAG  E+       M  R  +P+  
Sbjct: 273 KASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCC 332

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+S   K   + +   ++ +  +S  + D   ++ +     + G +++  EL   M
Sbjct: 333 TYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEM 392

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             + C P+ +T+ T+I        TE A  L   +++
Sbjct: 393 SGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVS 429



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 133/310 (42%), Gaps = 44/310 (14%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM-KSVSDCK 62
           L K  +P++A  + + M+  G+ P    Y  L++ + +    D+A   + +M K+  D  
Sbjct: 618 LFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVD-- 675

Query: 63  PDVYTYSILIKSCTKFHRF------------------------DLIEKILAE-------- 90
           PD  TY+ LI   ++ +R                          +I+++  E        
Sbjct: 676 PDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALL 735

Query: 91  ----MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
               M+  G+E + VTYN  ID   K  + +E  S  S M        D  +  ++I   
Sbjct: 736 LMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM----DTLRDEVSYTTVIIGL 791

Query: 147 GNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
             +  +++  K   E   + G+     T N+L  ++ +    D+  +++  M +R   P+
Sbjct: 792 CKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPS 851

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V+TYN+VI    K   ++K  E F +M  RG+  +S++Y  L+      G   +   +L 
Sbjct: 852 VITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLE 911

Query: 266 QVENSDVILD 275
           ++ +SD  +D
Sbjct: 912 EMASSDCEID 921


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 155/332 (46%), Gaps = 4/332 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+     A L+F  +   GL+P+   +  L++   +S  LDE F     M+  +   PD
Sbjct: 234 CKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEE-NRIYPD 292

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V+TYS+LI    K  R D+ E++  EM   G+  + +T+  +IDG  ++++ +   +++ 
Sbjct: 293 VFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYH 352

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+ + G  PD+   N++++     G++ K  K  +E  ++G+K D  T   L   Y + 
Sbjct: 353 QML-TMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKE 411

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  +    +   M +       V +  +I  F + G +   E   ++M   GMKP+  TY
Sbjct: 412 GDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATY 471

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             ++  Y K G +     +L++++ +        +N +++   + G ++    L   M  
Sbjct: 472 TMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLN 531

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
               PD+IT+  +++ +   G  E    L N+
Sbjct: 532 LGVTPDDITYNILLEGHCKNGKAEDLLKLRNE 563



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 1/259 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V  Y+ILI    K       + I  E+   G+  + V++NT+I+G  K++  +E    
Sbjct: 221 PKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE-GFR 279

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
               +E    +PD+FT + +I      G ++  E+ ++E    G++ +  T   L     
Sbjct: 280 LKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQC 339

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R+   D   +    M      P +V YN ++    K G + K  +   +M+  GMKP+ I
Sbjct: 340 RSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKI 399

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+  Y K G +     I + +    V+LD   F  +IS + + G V         M
Sbjct: 400 TYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREM 459

Query: 303 KERHCVPDNITFATMIQAY 321
            E    PD+ T+  +I  Y
Sbjct: 460 VEAGMKPDDATYTMVIDGY 478



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 126/291 (43%), Gaps = 42/291 (14%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK+   + A  LF+ M   GL+P+   +TAL+    +S  +D A +T + M ++
Sbjct: 298 VLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTM 357

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE- 117
              KPD+  Y+ L+    K    +   K++ EM  +G++   +TY T+IDGY K    E 
Sbjct: 358 G-VKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLES 416

Query: 118 ----------------------------------EMESSFSAMVESGGCHPDIFTLNSMI 143
                                             + E +   MVE+G   PD  T   +I
Sbjct: 417 AMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAG-MKPDDATYTMVI 475

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             Y   GN++   K   E  + G K  + T N+L     + G       +++ M      
Sbjct: 476 DGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVT 535

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           P  +TYNI++E   K G   K E+  K    +G+  +   Y SLVS Y+K+
Sbjct: 536 PDDITYNILLEGHCKNG---KAEDLLKLRNEKGLIVDYAYYTSLVSEYNKS 583



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 101/216 (46%)

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           +F + +   G  P +   N +I+ +   G+I   +  +NE    G++    + N L    
Sbjct: 209 TFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGL 268

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            ++   D+   +   M++   +P V TY+++I    K G ++  E+ F +M+ RG++PN 
Sbjct: 269 CKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNG 328

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           IT+ +L+    ++  I    +   Q+    V  D   +N +++   + GDV K  +L   
Sbjct: 329 ITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDE 388

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M+     PD IT+ T+I  Y   G  E+A  +   M
Sbjct: 389 MRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGM 424



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 107/229 (46%), Gaps = 18/229 (7%)

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S F+A++++ G     F  ++++ AY +SG +    + +           ++  N     
Sbjct: 138 SVFAAILDTAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRL---------VRNSNFQIPF 188

Query: 181 YGRAGMYDKM------RSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
           +G   + DKM       ++  F  +     F P V  YNI+I  F K G I   +  F +
Sbjct: 189 HGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNE 248

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           ++ RG++P ++++ +L++   K+  + +   + + +E + +  D   ++ +I    + G 
Sbjct: 249 IRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGR 308

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           ++   +LF  M++R   P+ ITF  +I         ++A N  ++M+ M
Sbjct: 309 LDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTM 357


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 154/323 (47%), Gaps = 14/323 (4%)

Query: 2   VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVS 59
           V+  +C  PE A  +F  +L  GL P V  Y  L+  + + G +D+A+     M  +SVS
Sbjct: 37  VLPAECTGPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVS 96

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PDV TY+ LI    K       E++L +M   GI  +  TYN++I GY  A  ++E 
Sbjct: 97  ---PDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKES 153

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M  S G  P +   NS I A      I++ +  ++   L G K +I + + L  
Sbjct: 154 VRVFKEM-SSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLH 212

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y   G +  M S+++ M  +   P    +NI+I  + + G ++K    F+ M+++GM P
Sbjct: 213 GYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIP 272

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP----FFNCIISAYGQAGDVEKM 295
           +++T+ +++S+  + G   ++D  L +  N  V +  P     + C+I      G++ K 
Sbjct: 273 DTVTFATVISSLCRIG---RLDDALHKF-NHMVDIGVPPSEAVYRCLIQGCCNHGELVKA 328

Query: 296 GELFLTMKERHCVPDNITFATMI 318
            EL   M  +   P  + + + I
Sbjct: 329 KELISEMMNKDIPPPGVKYFSSI 351



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 137/289 (47%), Gaps = 4/289 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P      +L   CT     +L   +   +   G+     +YNT+IDG+ K  + ++    
Sbjct: 30  PTTSLIDVLPAECTGP---ELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 86

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M+E     PD+ T NS+I     +  + K E+   +    G++ + +T N L   Y 
Sbjct: 87  FYKMIEQS-VSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYS 145

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            AGM+ +   V   M      P VV  N  I    +   I++ ++ F  M  +G KPN I
Sbjct: 146 TAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNII 205

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y +L+  Y+  G    ++S++  + +  ++ +  FFN +I+AY + G ++K   +F  M
Sbjct: 206 SYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDM 265

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
           + +  +PD +TFAT+I +   +G  + A +  N M+ +     + + +C
Sbjct: 266 QNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRC 314



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 125/276 (45%), Gaps = 1/276 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV +Y+ LI   +K    D   ++  +M    +    VTYN++IDG  K K+  + E  
Sbjct: 62  PDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERV 121

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              MV++G   P+  T NS+I  Y  +G  ++  + + E +  G+   +   N    +  
Sbjct: 122 LEQMVDAG-IRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALC 180

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R     + + + D M  +   P +++Y+ ++  +   G    M      M  +G+ PN  
Sbjct: 181 RHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHR 240

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            +  L++AY++ G++ K   I   ++N  +I DT  F  +IS+  + G ++     F  M
Sbjct: 241 FFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHM 300

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +    P    +  +IQ     G    A+ L ++M+
Sbjct: 301 VDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMM 336



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 133/320 (41%), Gaps = 35/320 (10%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            +C   ++A L+FE M + G+ P    +  ++S+  + G LD+A    N M  +    P 
Sbjct: 250 ARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIG-VPPS 308

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY-NTIIDGYGKAKKFEEMESSF 123
              Y  LI+ C         +++++EM    I    V Y ++II+   K  +  E +   
Sbjct: 309 EAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIM 368

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKM--------------------------EK 157
             MV++G   P++ T NS++  Y   GN+E+                           +K
Sbjct: 369 DLMVQTGQ-RPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTTAAKK 427

Query: 158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD---FMQKRFFFPTVVTYNIVIE 214
            ++E    G    IQT  ++     R    D+   +++    M  +F    ++T+NIVI 
Sbjct: 428 MFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF---DIITFNIVIS 484

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
              K G  ++ +E F  +   G+ P   TY  ++S   K     + D++   VE S    
Sbjct: 485 AMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAP 544

Query: 275 DTPFFNCIISAYGQAGDVEK 294
           D+   N I+    +  +V K
Sbjct: 545 DSRLLNHIVRMLLKKAEVAK 564



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 135/322 (41%), Gaps = 18/322 (5%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L  +M+S G+ P+   +  L++AY + G++D+A     DM++     PD  T++ +I S 
Sbjct: 226 LVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQN-KGMIPDTVTFATVISSL 284

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG---YGKAKKFEEMESSFSAMVESGGC 132
            +  R D        M  +G+  S   Y  +I G   +G+  K +E+    S M+     
Sbjct: 285 CRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKEL---ISEMMNKDIP 341

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG-MYDKMR 191
            P +   +S+I+     G + + +   +     G + ++ T N L + Y   G M + + 
Sbjct: 342 PPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALH 401

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +M + Q       +VTY         A      ++ F +M   G   +  TY  ++   
Sbjct: 402 YLMLWHQ--LALNRIVTY--------MARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGL 451

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            +     + + +L ++   +V  D   FN +ISA  + G  ++  ELF  +     VP  
Sbjct: 452 CRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTV 511

Query: 312 ITFATMIQAYNALGMTEAAQNL 333
            T+  MI         E A NL
Sbjct: 512 HTYNLMISNLIKEESYEEADNL 533



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 117/298 (39%), Gaps = 27/298 (9%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  M+  G+ PS  VY  L+      G L +A   I++M +     P V  +S +I +  
Sbjct: 297 FNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLF 356

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM----------------- 119
           K  R    + I+  M   G   + VT+N++++GY      EE                  
Sbjct: 357 KEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVT 416

Query: 120 ---------ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
                    +  F  M+ESG     I T   ++     +   ++      +   M VK D
Sbjct: 417 YMARRTTAAKKMFHEMIESGTT-VSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFD 475

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           I T NI+  +  + G   + + +   +      PTV TYN++I    K    E+ +  F 
Sbjct: 476 IITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFI 535

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            ++  G  P+S     +V    K   + K  + L  ++ +++ L+    + + S + +
Sbjct: 536 SVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDENNLTLEASTISLLASLFSR 593


>gi|162460162|ref|NP_001106062.1| pentatricopeptide repeat 5 [Zea mays]
 gi|154520281|gb|ABS82814.1| pentatricopeptide repeat protein 5 [Zea mays]
 gi|413924537|gb|AFW64469.1| pentatricopeptide repeat 5 [Zea mays]
          Length = 499

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 151/323 (46%), Gaps = 5/323 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++G+  Q   A  LF  M + G KP   VY +L+ A+     ++  L +A      MK +
Sbjct: 133 VMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKTKALAKALGYFEKMKCI 192

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P + TY+IL+++  +      ++ +  ++    +     TYN ++D YGK    +E
Sbjct: 193 ERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYGKNGMIKE 252

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           MES    M +S  C PD+ T N +I +YG     +KME+ +        +    T N + 
Sbjct: 253 MESVLVRM-KSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMI 311

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YGRA + +K  SV++ M++  F P  VT   +I  +     + K  + F ++     K
Sbjct: 312 TNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDELVTSQTK 371

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            +  +  S++ AY   GL  + D +L       V+ +   +  +  AY +A D   + +L
Sbjct: 372 VHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLYKAYTKANDKLLVQKL 431

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
              M ++  VP+   F   ++A+
Sbjct: 432 LKRMNKQGIVPNKKFFLDALEAF 454



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 147/314 (46%), Gaps = 11/314 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +Y+ L+S  G+ G +  A    + M++ S CKPD   Y+ LI +    H  D  + +   
Sbjct: 126 IYSKLISVMGRKGQIRMAMWLFSQMRN-SGCKPDTSVYNSLIGA--HLHSRDKTKALAKA 182

Query: 91  MSYL-GIEC------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + Y   ++C      + VTYN ++  + +A   ++++  F  + ES    PD++T N ++
Sbjct: 183 LGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESV-VSPDVYTYNGVL 241

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AYG +G I++ME           + D+ T NIL  SYGR   +DKM  V   + +    
Sbjct: 242 DAYGKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKER 301

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT  T+N +I  +G+A   EK E   +KM+  G KPN +T   L+  Y+    + K   +
Sbjct: 302 PTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQV 361

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             ++  S   +     N ++ AY   G   +   L  T  ++  VP+  T+  + +AY  
Sbjct: 362 FDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQQCVVPNGSTYKLLYKAYTK 421

Query: 324 LGMTEAAQNLENKM 337
                  Q L  +M
Sbjct: 422 ANDKLLVQKLLKRM 435



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 6/241 (2%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNE 161
           Y+ +I   G+  +       FS M  SG C PD    NS+I A+ +S +  K + K    
Sbjct: 127 YSKLISVMGRKGQIRMAMWLFSQMRNSG-CKPDTSVYNSLIGAHLHSRDKTKALAKALGY 185

Query: 162 FNLMGV----KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
           F  M      +  I T NIL +++ +AG   ++  +   + +    P V TYN V++ +G
Sbjct: 186 FEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYG 245

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           K G I++ME    +MK    +P+ IT+  L+ +Y +     K++ + + +  S      P
Sbjct: 246 KNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHP 305

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            FN +I+ YG+A   EK   +   M+E    P+ +T   +I  Y        A+ + +++
Sbjct: 306 TFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDEL 365

Query: 338 I 338
           +
Sbjct: 366 V 366



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 41/187 (21%)

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           +L +  GR   + +   V  +MQK R++      Y+ +I   G+ G I      F +M++
Sbjct: 93  LLFEELGRRDAWLQCLDVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRN 152

Query: 235 RGMKPNS----------------------------------------ITYCSLVSAYSKA 254
            G KP++                                        +TY  L+ A+++A
Sbjct: 153 SGCKPDTSVYNSLIGAHLHSRDKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQA 212

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G   +VD + + ++ S V  D   +N ++ AYG+ G +++M  + + MK   C PD ITF
Sbjct: 213 GDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDVITF 272

Query: 315 ATMIQAY 321
             +I +Y
Sbjct: 273 NILIDSY 279


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 157/335 (46%), Gaps = 16/335 (4%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  Q E A+ + + M S G  P V  Y  ++ ++   G LD A     ++    +C+P V
Sbjct: 150 KANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLK-DNCEPTV 208

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA----KKFEEMES 121
            TY+ILI++       D+  K+L EM   G+E   +TYN II G  K     K FE + S
Sbjct: 209 ITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRS 268

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
                + S GC PDI T N ++    + G   + EK  +E   +G K ++ T +IL  + 
Sbjct: 269 -----LSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTL 323

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R G  ++  +++  M+++   P    Y+ +I  F + G ++   E+ + M   G  P+ 
Sbjct: 324 CRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDI 383

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGEL 298
           + Y ++++   + G   K D  L   E  D +   P    +N + SA   +GD  +  E+
Sbjct: 384 VNYNTIMAGLCRTG---KADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEM 440

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            L +  +   PD IT+ ++I      GM + A  L
Sbjct: 441 ILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIEL 475



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 157/336 (46%), Gaps = 5/336 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + MLS GL+P    Y A++    +  ++D+AF  +  + S   CKPD+ TY+IL+++ 
Sbjct: 230 LLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSS-RGCKPDIITYNILLRTL 288

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               ++   EK+++EM  +G + + VT++ +I    +  K EE  +   +M E G   PD
Sbjct: 289 LSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKG-LKPD 347

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            +  + +I+ +   G ++   ++       G   DI   N +     R G  D+   V +
Sbjct: 348 AYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFE 407

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            + +    P V +YN +      +G   +  E   K+ ++G+ P+ ITY SL+S   + G
Sbjct: 408 KLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDG 467

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
           ++ +   +L  +++     +   +N I+    +        E+   M E+ C P+  T+ 
Sbjct: 468 MVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYI 527

Query: 316 TMIQAYNALGMTEAAQNLENK---MIAMKENSGKKL 348
            +I+     G+   A  L N    M A+ E+S  +L
Sbjct: 528 LLIEGIGFSGLRAEAMELANSLHGMNAISEDSFNRL 563



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 161/354 (45%), Gaps = 27/354 (7%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+ + E++   G KP V  Y AL+S + ++  L+ A   ++ MKS     PDV TY+I+
Sbjct: 122 KATRVMEILERYG-KPDVFAYNALISGFIKANQLENANRVLDRMKS-RGFLPDVVTYNIM 179

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN-----TIIDGYGKA--KKFEEMESSFS 124
           I S     + DL  +I  E+     E + +TY      TI+DG      K  +EM S   
Sbjct: 180 IGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSK-- 237

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
                 G  PD  T N++I        ++K  +     +  G K DI T NIL ++    
Sbjct: 238 ------GLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSR 291

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G + +   ++  M      P VVT++I+I T  + G +E+     + MK +G+KP++  Y
Sbjct: 292 GKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCY 351

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L++ + + G +      L  + +   + D   +N I++   + G  ++  E+F  + E
Sbjct: 352 DPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDE 411

Query: 305 RHCVPDNITFATMIQA-------YNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
             C P+  ++ T+  A       Y AL   E    L N+ I   E +   LI C
Sbjct: 412 VGCPPNVSSYNTLFSALWSSGDRYRAL---EMILKLLNQGIDPDEITYNSLISC 462



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 142/321 (44%), Gaps = 3/321 (0%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
            E M+  G  P V + T L+  +  S  + +A   +  ++     KPDV+ Y+ LI    
Sbjct: 92  LECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG--KPDVFAYNALISGFI 149

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K ++ +   ++L  M   G     VTYN +I  +    K +     F  +++   C P +
Sbjct: 150 KANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDN-CEPTV 208

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            T   +I A    G I+   K  +E    G++ D  T N + +   +  M DK   ++  
Sbjct: 209 ITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRS 268

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           +  R   P ++TYNI++ T    G   + E+   +M   G KPN +T+  L+    + G 
Sbjct: 269 LSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGK 328

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + +  ++LR ++   +  D   ++ +I+ + + G ++   E    M    C+PD + + T
Sbjct: 329 VEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNT 388

Query: 317 MIQAYNALGMTEAAQNLENKM 337
           ++      G  + A  +  K+
Sbjct: 389 IMAGLCRTGKADQALEVFEKL 409



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 2/229 (0%)

Query: 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
           +A K+ E       MV+ G   PD+     +I  + NS NI K  +        G K D+
Sbjct: 81  RAGKYNESLYFLECMVDKGY-TPDVILCTKLIKGFFNSRNIGKATRVMEILERYG-KPDV 138

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
              N L   + +A   +    V+D M+ R F P VVTYNI+I +F   G ++   E F++
Sbjct: 139 FAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEE 198

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           +     +P  ITY  L+ A    G I     +L ++ +  +  DT  +N II    +   
Sbjct: 199 LLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMM 258

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           V+K  EL  ++  R C PD IT+  +++   + G     + L ++MI++
Sbjct: 259 VDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISI 307



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 7/192 (3%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C+  + +QA  +FE +   G  P+V  Y  L SA   SG    A   I  + +  
Sbjct: 389 IMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLN-Q 447

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD  TY+ LI    +    D   ++L +M       + V+YN I+ G  K  +  + 
Sbjct: 448 GIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDA 507

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILT 178
               +AM E  GC P+  T   +I   G SG   E ME   +   +  +  D  + N L 
Sbjct: 508 IEVLAAMTEK-GCQPNETTYILLIEGIGFSGLRAEAMELANSLHGMNAISED--SFNRLN 564

Query: 179 KSYGRAGMYDKM 190
           K++    +Y  +
Sbjct: 565 KTFPLLDVYKDL 576


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 157/317 (49%), Gaps = 5/317 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  + EQ   + E+++  GL P+  +Y  L++ Y Q   L  AF     MKS    +PD
Sbjct: 170 GKVAKAEQ---VLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKS-RHIRPD 225

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ LI    K       E ++ EM   G++ S  T+NT+ID YG A + E+  +  S
Sbjct: 226 HITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLS 285

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +  G   D+ +  S++ A+  +G I +     ++     V  + Q  N +  +Y  +
Sbjct: 286 DM-QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIES 344

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  ++   +++ M+      ++VTYN++++   ++  I++ EE    ++++G++P+ ++Y
Sbjct: 345 GDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSY 404

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +++SA    G   K   +L+++    +      ++ ++SA   AG V  M  L+  M  
Sbjct: 405 NTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLH 464

Query: 305 RHCVPDNITFATMIQAY 321
           ++  P +  +  M+ AY
Sbjct: 465 KNVEPSSSIYGIMVDAY 481



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 172/392 (43%), Gaps = 70/392 (17%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + ML DG KP++  Y  L+S   ++G +DE    +++M S S   PD +TYSIL    
Sbjct: 73  LRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHS-MFPDGFTYSILFDGL 131

Query: 76  T-----------------------------------KFHRFDLIEKILAEMSYLGIECSA 100
           T                                   K  +    E++L  + + G+  + 
Sbjct: 132 TRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTT 191

Query: 101 VTYNTIIDGYGKAKK-------FEEMES--------SFSAMV------------------ 127
           V YNT+I+GY + +        FE+M+S        +++A++                  
Sbjct: 192 VIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVME 251

Query: 128 -ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E  G  P + T N++I AYG +G +EK     ++    G+K+D+ +   + K++ + G 
Sbjct: 252 MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGK 311

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
             +  +++D M  +   P    YN +I+ + ++G  E+     +KMK+ G+  + +TY  
Sbjct: 312 IPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNL 371

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+    ++  I + + ++  + N  +  D   +N IISA    GD +K  EL   M +  
Sbjct: 372 LLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYG 431

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             P   T+ T++ A  + G     + L  +M+
Sbjct: 432 IRPTLRTYHTLVSALASAGRVHDMECLYQQML 463



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 114/238 (47%), Gaps = 1/238 (0%)

Query: 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
           A +YN +I G  ++ K  +    F  MV+ G   P+  T N+MI  +   G++E   +  
Sbjct: 16  AFSYNVVIAGLWRSGKGSDALKVFDEMVDMG-VVPNWITYNTMIDGHVKGGDLEAGFRLR 74

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           ++    G K +I T N+L     RAG  D+ R +MD M     FP   TY+I+ +   + 
Sbjct: 75  DQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRT 134

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G    M   F +   +G+   + T   L++   K G + K + +L  + ++ ++  T  +
Sbjct: 135 GESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIY 194

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           N +I+ Y Q  D+     +F  MK RH  PD+IT+  +I     L M   A++L  +M
Sbjct: 195 NTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM 252



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 130/272 (47%), Gaps = 2/272 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +   +A  L   M   G+ PSV+ +  L+ AYG +G L++ F+ ++DM+     K 
Sbjct: 236 LCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQ-KGIKS 294

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV ++  ++K+  K  +      IL +M Y  +  +A  YN+IID Y ++   E+     
Sbjct: 295 DVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLV 354

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  SG     I T N ++     S  I++ E+        G++ D+ + N +  +   
Sbjct: 355 EKMKNSG-VSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCN 413

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  DK   ++  M K    PT+ TY+ ++     AG +  ME  +++M H+ ++P+S  
Sbjct: 414 KGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSI 473

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           Y  +V AY +     KV S+ +++    +  D
Sbjct: 474 YGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 505



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 141/323 (43%), Gaps = 37/323 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F+ M+  G+ P+   Y  ++  + + G L+  F  + D       KP++ TY++L+   
Sbjct: 38  VFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFR-LRDQMLHDGPKPNIVTYNVLLSGL 96

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  R D    ++ EM+   +     TY+ + DG  +  +   M S F+  ++ G     
Sbjct: 97  CRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKG----- 151

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
                 M+ AY                          T +IL     + G   K   V++
Sbjct: 152 -----VMLGAY--------------------------TCSILLNGLCKDGKVAKAEQVLE 180

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            +      PT V YN +I  + +   +      F++MK R ++P+ ITY +L++   K  
Sbjct: 181 MLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLE 240

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
           ++ K + ++ ++E S V      FN +I AYG AG +EK   +   M+++    D I+F 
Sbjct: 241 MVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFG 300

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
           ++++A+   G    A  + + MI
Sbjct: 301 SVVKAFCKNGKIPEAVAILDDMI 323


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 158/331 (47%), Gaps = 4/331 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-S 69
           ++A   +  ML  G+ P V  Y+++++A  ++  +D+A   +N M   +   PD  TY S
Sbjct: 218 DKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK-NGVMPDCMTYNS 276

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           IL   C+     + I   L +M   G+E + VTY+++++   K  +  E    F +M + 
Sbjct: 277 ILHGYCSSGQPKEAI-GTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G   PDI T  +++  Y   G + +M    +     G++ D    NIL  +Y +    D+
Sbjct: 336 G-LEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQ 394

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              V   M++    P VV Y  VI+   K+G ++    YF++M   G+ PN I Y SL+ 
Sbjct: 395 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIH 454

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
                    K + ++ ++ +  + L+T FFN II ++ + G V +  +LF  M      P
Sbjct: 455 GLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 514

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           D IT+ T+I      G  + A  L   M+++
Sbjct: 515 DIITYNTLIDGCCLAGKMDEATKLLASMVSV 545



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 154/342 (45%), Gaps = 11/342 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            K ++ +QA L+F  M   GL P+V  Y  ++    +SG +D+A      M       P+
Sbjct: 387 AKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMID-EGLTPN 445

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           +  Y+ LI       ++D  E+++ EM   GI  + + +N+IID + K  +  E E  F 
Sbjct: 446 IIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFD 505

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            MV  G   PDI T N++I     +G +++  K       +GVK DI T   L   Y R 
Sbjct: 506 LMVRIG-VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRV 564

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              D   ++   M      P ++TYNI+++           +E +  +   G +    TY
Sbjct: 565 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTY 624

Query: 245 CSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G +++  +LF  
Sbjct: 625 NIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAA 681

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
                 VPD  T++ M +     G  E    L++  ++M+EN
Sbjct: 682 HSANGLVPDVRTYSLMAENLIEQGSLE---ELDDLFLSMEEN 720



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 143/339 (42%), Gaps = 37/339 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 61
           +L K    + A L FE M+ +GL P++ VYT+L+         D+A   I +M     C 
Sbjct: 420 VLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL 479

Query: 62  ---------------------------------KPDVYTYSILIKSCTKFHRFDLIEKIL 88
                                            KPD+ TY+ LI  C    + D   K+L
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           A M  +G++   VTY T+I+GY +  + ++  + F  MV SG   P+I T N ++    +
Sbjct: 540 ASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG-VSPNIITYNIILQGLFH 598

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVV 207
           +      ++ Y      G + ++ T NI+     +  + D+ +R   +         T  
Sbjct: 599 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR- 657

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           T+NI+I    K G +++ ++ F      G+ P+  TY  +     + G + ++D +   +
Sbjct: 658 TFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSM 717

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           E +    D+   N I+    Q GD+ + G     + E+H
Sbjct: 718 EENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKH 756



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 135/300 (45%), Gaps = 4/300 (1%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDL 83
           + P+V  Y  L+    ++G LD  F+ + ++      + D  T++ L+K  C      D 
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVK-KGFRVDAITFTPLLKGLCADKRTSDA 146

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNS 141
           ++ +L  M+ LG      +YN ++ G     + +E       M +   GG  PD+ + N+
Sbjct: 147 MDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNT 206

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +++ +   G+ +K    Y+E    G+  D+ T + +  +  +A   DK   V++ M K  
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P  +TYN ++  +  +G  ++     KKM+  G++PN +TY SL++   K G   +  
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            I   +    +  D   +  ++  Y   G + +M  L   M      PD+  F  +I AY
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAY 386



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 158/343 (46%), Gaps = 7/343 (2%)

Query: 2   VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 59  SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
             C PDV++Y+ L+K  C +    + +E   ++A+    G     V+YNT+++G+ K   
Sbjct: 157 LGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGD 216

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
            ++  S++  M++  G  PD+ T +S+I+A   +  ++K  +  N     GV  D  T N
Sbjct: 217 SDKAYSTYHEMLDR-GILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 275

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +   Y  +G   +    +  M+     P VVTY+ ++    K G   +  + F  M  R
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G++P+  TY +L+  Y+  G ++++ ++L  +  + +  D   FN +I AY +   V++ 
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQA 395

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +F  M++    P+ + + T+I      G  + A     +MI
Sbjct: 396 MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMI 438


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 158/327 (48%), Gaps = 2/327 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +++ M+ DG+ PSV  Y+ L+ ++G+   +D     +N+M++    KP+VY+Y+I 
Sbjct: 196 EAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEA-RGVKPNVYSYTIC 254

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I+   +  RFD   +IL +M   G +   VT+  +I     A +  + +  F  M  S  
Sbjct: 255 IRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQ 314

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD  T  +++   G+SG+ + + + +N     G   +I +   +  +  + G  D+  
Sbjct: 315 -KPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEAL 373

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           +V D M+++   P   +YN +I  F KA   ++  E F  M   G  PN  T+   ++ Y
Sbjct: 374 AVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYY 433

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K+G  +K       +++  ++ D    N ++S+  ++G +     +F  +K+    PD 
Sbjct: 434 GKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDT 493

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           IT+  MI+  +     + A N  + M+
Sbjct: 494 ITYTMMIKCCSKASKADEAMNFFSDMV 520



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 157/328 (47%), Gaps = 4/328 (1%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K K+  +A  LF      G+      Y +L+       L+D A     +MK +  C P
Sbjct: 748  LCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLG-CGP 806

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-MESS 122
            D +TY++++ +  K  R + + ++ AEM   G E + VTYNTII G  K+K+ E+ ++  
Sbjct: 807  DEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLY 866

Query: 123  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            ++ M E  G  P   T   ++     +G +   E  +NE    G K +    NIL   + 
Sbjct: 867  YNLMSE--GFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHR 924

Query: 183  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             AG  + +  + + M ++   P + +Y ++I+T   AG +     YF+++   G++P+ I
Sbjct: 925  IAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLI 984

Query: 243  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
             Y  L+    K+  I +   +  +++   ++ +   +N +I   G+AG   +  +++  +
Sbjct: 985  IYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEEL 1044

Query: 303  KERHCVPDNITFATMIQAYNALGMTEAA 330
              +   P+  T+  +I+ Y+  G T+ A
Sbjct: 1045 LIKGWKPNVFTYNALIRGYSVSGSTDNA 1072



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 161/341 (47%), Gaps = 2/341 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV  GK +  +    L   M + G+KP+V  YT  +   GQ+   DEA+  +  M+  S 
Sbjct: 220 MVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMED-SG 278

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDV T++++I+      R    + +  +M     +   VTY T++D  G +   + + 
Sbjct: 279 CKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVM 338

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             ++AMV + G + +I +  +++ A    G +++    ++E    G+  +  + N L   
Sbjct: 339 EIWNAMV-ADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISG 397

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + +A M+D+   + + M      P   T+ + I  +GK+G   K  + ++ MK +G+ P+
Sbjct: 398 FLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPD 457

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
                +++S+ +++G +     +  ++++  V  DT  +  +I    +A   ++    F 
Sbjct: 458 VAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFS 517

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            M E  CVPD +   ++I      G    A  L +++  MK
Sbjct: 518 DMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMK 558



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 167/385 (43%), Gaps = 42/385 (10%)

Query: 1   MVMLGKCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           + +L KC     +  + E+   M++DG   ++  YTA+V A  Q G LDEA +  ++MK 
Sbjct: 322 ITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKE 381

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
                P+ Y+Y+ LI    K   FD   ++   M+  G   +  T+   I+ YGK+ +  
Sbjct: 382 -KGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSL 440

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +    +  M +S G  PD+   N+++S+   SG +   ++ + E   MGV  D  T  ++
Sbjct: 441 KAIQRYEHM-KSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMM 499

Query: 178 TKSYGRAGMYDK-------------------MRSVMDFMQK--------RFFF------- 203
            K   +A   D+                   + S++D + K        + F        
Sbjct: 500 IKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKI 559

Query: 204 -PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            PT  TYN ++   G+ G ++++    ++M H    PN ITY +++   SK G +     
Sbjct: 560 EPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIG 619

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           +L  +       D   +N ++    +    E+   +F  MK +   PD  T  T++ ++ 
Sbjct: 620 MLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMK-KILAPDYATLCTILPSFV 678

Query: 323 ALG-MTEAAQNLENKMIAMKENSGK 346
             G M EA   ++  ++    N+ K
Sbjct: 679 KNGLMKEALHTVKEYILKADCNTDK 703



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 10/256 (3%)

Query: 13   ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
            A  LF  ML  G KP+  +Y  L++ +  +G  +        M       PD+ +Y++LI
Sbjct: 897  AENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVE-QGINPDIKSYTVLI 955

Query: 73   KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
             +     R +       ++  LG+E   + YN +IDG GK+++ EE    F+ M +  G 
Sbjct: 956  DTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEM-KKKGI 1014

Query: 133  HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             P+++T NS+I   G +G   +  + Y E  + G K ++ T N L + Y  +G  D   +
Sbjct: 1015 VPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYA 1074

Query: 193  VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
              D +       T +   +V E       I   E  F +MK RG  P+  TY  ++ A  
Sbjct: 1075 AYDCVAVGVSLKTALISGLVDENL-----INIAEGLFAEMKRRGCGPDQFTYNLILDAIG 1129

Query: 253  KAGLIMKVDSILRQVE 268
            K+   M+++ +L+  E
Sbjct: 1130 KS---MRIEEMLKVQE 1142



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 143/363 (39%), Gaps = 37/363 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+  + ++A  +   M   G KP V  +T ++     +G L +A      MK+ SD K
Sbjct: 257 VLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKA-SDQK 315

Query: 63  PDVYTYSILIKSC-----------------------------------TKFHRFDLIEKI 87
           PD  TY  L+  C                                    +  R D    +
Sbjct: 316 PDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAV 375

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             EM   GI     +YN++I G+ KA  F+     F+ M  + G  P+ +T    I+ YG
Sbjct: 376 FDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHM-NACGPSPNGYTHVLFINYYG 434

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            SG   K  + Y      G+  D+   N +  S  R+G     + V   ++     P  +
Sbjct: 435 KSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTI 494

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY ++I+   KA   ++   +F  M   G  P+ +   SL+    K G   +   +  Q+
Sbjct: 495 TYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQL 554

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           +   +      +N ++S  G+ G V+++  L   M      P+ IT+ T++   +  G  
Sbjct: 555 KEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEV 614

Query: 328 EAA 330
             A
Sbjct: 615 NCA 617



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 152/385 (39%), Gaps = 72/385 (18%)

Query: 25   LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY---------------S 69
            L P       ++ ++ ++GL+ EA  T+ +    +DC  D  ++               S
Sbjct: 663  LAPDYATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKS 722

Query: 70   I--------------------LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
            I                    LI+   K  +     ++  +   LG+     +YN++I G
Sbjct: 723  IEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRG 782

Query: 110  YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
                   +  E  F+ M +  GC PD FT N ++ A G S  IE+M +   E +  G ++
Sbjct: 783  LVDENLIDIAEDLFTEM-KRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYES 841

Query: 170  DIQTLNI----LTKS------------------------YG-------RAGMYDKMRSVM 194
               T N     L KS                        YG       +AG      ++ 
Sbjct: 842  TYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLF 901

Query: 195  DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
            + M +    P    YNI++     AG+ E + + F+KM  +G+ P+  +Y  L+     A
Sbjct: 902  NEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTA 961

Query: 255  GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
            G +    S  RQ+    +  D   +N +I   G++  +E+   LF  MK++  VP+  T+
Sbjct: 962  GRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTY 1021

Query: 315  ATMIQAYNALG-MTEAAQNLENKMI 338
             ++I      G  +EAAQ  E  +I
Sbjct: 1022 NSLILHLGKAGKASEAAQMYEELLI 1046



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 116/258 (44%), Gaps = 10/258 (3%)

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
           FDL++K +       ++ +  T+ T+  G G          +   M E+G    + +T N
Sbjct: 131 FDLMQKQI-------VKANVGTFATVFSGVGVQGGLRSAPVALPVMREAG-MSLNGYTYN 182

Query: 141 SMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            +I     SG + E ME  Y      G+   ++T ++L  S+G+    D +  +++ M+ 
Sbjct: 183 GLIYFLVKSGFDAEAME-VYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEA 241

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R   P V +Y I I   G+A   ++  +   KM+  G KP+ +T+  ++     AG +  
Sbjct: 242 RGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSD 301

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +  +++ SD   D   +  ++   G +GD + + E++  M       + +++  ++ 
Sbjct: 302 AKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVD 361

Query: 320 AYNALGMTEAAQNLENKM 337
           A   +G  + A  + ++M
Sbjct: 362 ALCQVGRLDEALAVFDEM 379



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 73/396 (18%), Positives = 146/396 (36%), Gaps = 70/396 (17%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  +    ++P+   Y  L+S  G+ G + E    + +M   S   P++ TY+ +
Sbjct: 546 EAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTH-SIHPPNLITYNTV 604

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM----- 126
           +   +K    +    +L  M+  G      +YNT++ G  K ++FEE    F  M     
Sbjct: 605 LDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKILA 664

Query: 127 -------------VESG----------------GCHPDIFTLNSMISAYGNSGNIEK--- 154
                        V++G                 C+ D  + +S++    N   +EK   
Sbjct: 665 PDYATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIE 724

Query: 155 --------------------------------MEKWYNEFNLMGVKADIQTLNILTKSYG 182
                                             + +N+F  +GV     + N L +   
Sbjct: 725 FAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLV 784

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
              + D    +   M++    P   TYN++++  GK+  IE+M     +M  +G +   +
Sbjct: 785 DENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYV 844

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +++S   K+  + +   +   + +         +  ++    +AG +     LF  M
Sbjct: 845 TYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEM 904

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            E  C P+   +  ++  +   G TE    +  KM+
Sbjct: 905 LEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMV 940



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            ++ LGK  +  +A+ ++E +L  G KP+V  Y AL+  Y  SG  D A++         D
Sbjct: 1025 ILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAY-------D 1077

Query: 61   CKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C    V   + LI      +  ++ E + AEM   G      TYN I+D  GK+ + EEM
Sbjct: 1078 CVAVGVSLKTALISGLVDENLINIAEGLFAEMKRRGCGPDQFTYNLILDAIGKSMRIEEM 1137



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 13/162 (8%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            LGK ++ E+A  LF  M   G+ P++  Y +L+   G++G   EA     ++  +   KP
Sbjct: 993  LGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELL-IKGWKP 1051

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN---TIIDGYGKAKKFEEME 120
            +V+TY+ LI+  +     D         +Y   +C AV  +    +I G          E
Sbjct: 1052 NVFTYNALIRGYSVSGSTD--------NAYAAYDCVAVGVSLKTALISGLVDENLINIAE 1103

Query: 121  SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
              F+ M +  GC PD FT N ++ A G S  IE+M K   E 
Sbjct: 1104 GLFAEM-KRRGCGPDQFTYNLILDAIGKSMRIEEMLKVQEEI 1144



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 7/171 (4%)

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L +++GR G    M  V D MQK+     V T+  V    G  G +         M+  G
Sbjct: 117 LMRAHGRVG---DMAQVFDLMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAG 173

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           M  N  TY  L+    K+G   +   + + +    +      ++ ++ ++G+  DV+ + 
Sbjct: 174 MSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVL 233

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
            L   M+ R   P+  ++   I+        + A  +  KM    E+SG K
Sbjct: 234 WLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKM----EDSGCK 280


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 16/343 (4%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLG  K   +A  +F  + +   +P+   Y +++      G  ++     N+M +   C 
Sbjct: 168 MLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCH 227

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DGYGKAKK 115
           PD  TYS LI +  K  R D   ++L EM   G++ +A  Y  II       + +G    
Sbjct: 228 PDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSL 287

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           FEEM   +        C PD+FT   +I   G +G I++   +Y+E      K D   +N
Sbjct: 288 FEEMRYMY--------CRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMN 339

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKH 234
            +    G+AG  D    + + M      P VVTYN +I+  F     + ++  +F++MK 
Sbjct: 340 NMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKG 399

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+ P+  TY  L+  + K   I K   +L +++          +  +I A G+A   + 
Sbjct: 400 SGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 459

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             ELF  +KE         +A MI+     G  + A NL ++M
Sbjct: 460 ACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEM 502



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 151/326 (46%), Gaps = 3/326 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M     +P V  YT L+   G++G +DEA+   ++M+   DCKPD    + +I   
Sbjct: 287 LFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQR-EDCKPDTVVMNNMINFL 345

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHP 134
            K  R D   K+  EM       + VTYNTII    ++K +  E+ S F  M +  G  P
Sbjct: 346 GKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERM-KGSGISP 404

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
             FT + +I  +  +  IEK      E +  G          L  + G+A  YD    + 
Sbjct: 405 SPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 464

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             +++     +   Y ++I+  GKAG ++     F +M   G  PN   Y +L+S  ++A
Sbjct: 465 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARA 524

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
            ++ +  + +R+++    + D   +N I++   + G   +  E+   MK     PD +++
Sbjct: 525 CMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSY 584

Query: 315 ATMIQAYNALGMTEAAQNLENKMIAM 340
            T++ A +  GM E A  L  +M A+
Sbjct: 585 NTVLSALSHAGMFEEAAELMKEMNAL 610



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 135/287 (47%), Gaps = 5/287 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVSDCK 62
           LGK  + +    LFE M      P+V  Y  ++ A  +S   + E FS    MK  S   
Sbjct: 345 LGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKG-SGIS 403

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++     
Sbjct: 404 PSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 123 FSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F  + E+ G     ++ +  MI   G +G ++     ++E + +G   ++   N L    
Sbjct: 464 FQELKENCGSSSARVYAV--MIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGL 521

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            RA M D+  + M  MQ+    P + +YNI++    K G   +  E    MK+  +KP++
Sbjct: 522 ARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDA 581

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           ++Y +++SA S AG+  +   +++++       D   ++ I+ A G+
Sbjct: 582 VSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGK 628



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 144/318 (45%), Gaps = 3/318 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + ++A   +  M  +  KP   V   +++  G++G LD+      +M  VS C P
Sbjct: 310 LGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM-GVSHCIP 368

Query: 64  DVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           +V TY+ +IK+  +   R   +      M   GI  S  TY+ +IDG+ K  + E+    
Sbjct: 369 NVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMML 428

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E G   P      S+I A G +   +   + + E       +  +   ++ K  G
Sbjct: 429 LEEMDEKG-FPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLG 487

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG  D   ++ D M K    P V  YN ++    +A  +++     +KM+  G  P+  
Sbjct: 488 KAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDIN 547

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y  +++  +K G   +   +L  ++NS +  D   +N ++SA   AG  E+  EL   M
Sbjct: 548 SYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607

Query: 303 KERHCVPDNITFATMIQA 320
                  D IT++++++A
Sbjct: 608 NALGFEYDLITYSSILEA 625



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 36/255 (14%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           TY  +I      +++ EM      MV S  C      L+ +I   GN+  I K    + +
Sbjct: 125 TYMALIHCLELVEQYGEMWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQ 184

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAG 220
                 +   Q  N +       G Y+K+  + + M       P  VTY+ +I  F K G
Sbjct: 185 IKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLG 244

Query: 221 HIEKMEEYFKKMKHRGMKPNS-----------------------------------ITYC 245
             +       +MK  GM+P +                                    TY 
Sbjct: 245 RQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYT 304

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+    KAG I +      +++  D   DT   N +I+  G+AG ++   +LF  M   
Sbjct: 305 ELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS 364

Query: 306 HCVPDNITFATMIQA 320
           HC+P+ +T+ T+I+A
Sbjct: 365 HCIPNVVTYNTIIKA 379



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 1/165 (0%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           L+ + +  G A M  K  ++   ++ R   PT   YN +I      G  EK+ E + +M 
Sbjct: 162 LSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMS 221

Query: 234 HRGM-KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           + G   P+++TY +L+SA+ K G       +L +++ + +      +  IIS + +  +V
Sbjct: 222 NEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNV 281

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                LF  M+  +C PD  T+  +I+     G  + A +  ++M
Sbjct: 282 HGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEM 326


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 161/323 (49%), Gaps = 4/323 (1%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  +  +A  +FE+++  GL P+  +Y  L++ Y Q   L  AF     MKS 
Sbjct: 339 ILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKS- 397

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              +PD  TY+ LI    K       E ++ EM   G++ S  T+NT+ID YG A + E+
Sbjct: 398 RHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEK 457

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             +  S M +  G   D+ +  S++ A+  +G I +     ++     V  + Q  N + 
Sbjct: 458 CFTVLSDM-QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSII 516

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y  +G  ++   +++ M+      ++VTYN++++   ++  I++ EE    ++++G++
Sbjct: 517 DAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLR 576

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ ++Y +++SA    G   K   +L+++    +       + ++SA   AG V  M  L
Sbjct: 577 PDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECL 636

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
           +  M  ++  P +  +  M+ AY
Sbjct: 637 YQQMLHKNVEPSSSIYGIMVDAY 659



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 37/357 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + ML DG KP+V  Y  L+S   ++G +DE  + +++M S S   PD +TYSIL    
Sbjct: 251 LRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHS-MLPDGFTYSILFDGL 309

Query: 76  TKFHRFDLIEKILAE-----------------------------------MSYLGIECSA 100
           T+      +  + AE                                   + + G+  + 
Sbjct: 310 TRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTT 369

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           V YNT+I+GY + +        F  M +S    PD  T N++I+       + K E    
Sbjct: 370 VIYNTLINGYCQVRDLRGAFCIFEQM-KSRHIRPDHITYNALINGLCKLEMVTKAEDLVM 428

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E    GV   ++T N L  +YG AG  +K  +V+  MQ++     V+++  V++ F K G
Sbjct: 429 EMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNG 488

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            I +       M ++ + PN+  Y S++ AY ++G   +   ++ +++NS V      +N
Sbjct: 489 KIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYN 548

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            ++    ++  +++  EL  T++ +   PD +++ T+I A    G T+ A  L  +M
Sbjct: 549 LLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEM 605



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 129/278 (46%), Gaps = 3/278 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEM--SYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +PD + ++ ++++C      D+   +L  M  S       A +YN +I G  ++ K  + 
Sbjct: 154 RPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDA 213

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  MV+ G   P+  T N+MI  +   G++E   +  ++    G K ++ T N+L  
Sbjct: 214 LKVFDEMVDMG-VAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLS 272

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              R G  D+ R++MD M      P   TY+I+ +   + G  + M   F +   +G+  
Sbjct: 273 GLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVML 332

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
            + T   L++   K G + K   +   + ++ ++  T  +N +I+ Y Q  D+     +F
Sbjct: 333 GAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIF 392

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             MK RH  PD+IT+  +I     L M   A++L  +M
Sbjct: 393 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM 430



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 143/313 (45%), Gaps = 2/313 (0%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM-KSVSDCKPDVYTYSILIKSC 75
           F ++++ G +P    +  +V A   +G LD A + +  M +S     PD ++Y+++I   
Sbjct: 145 FGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGL 204

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +     K+  EM  +G+  + +TYNT+IDG+ K    E        M+  G   P+
Sbjct: 205 WRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGP-KPN 263

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T N ++S    +G +++     +E     +  D  T +IL     R G    M S+  
Sbjct: 264 VVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFA 323

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
              K+       T +I++    K G + K ++ F+ + H G+ P ++ Y +L++ Y +  
Sbjct: 324 ESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVR 383

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +     I  Q+++  +  D   +N +I+   +   V K  +L + M++    P   TF 
Sbjct: 384 DLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFN 443

Query: 316 TMIQAYNALGMTE 328
           T+I AY   G  E
Sbjct: 444 TLIDAYGTAGQLE 456



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 123/256 (48%), Gaps = 2/256 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G+ PSV+ +  L+ AYG +G L++ F+ ++DM+     K DV ++  ++K+  K  
Sbjct: 430 MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQ-KGIKSDVISFGSVVKAFCKNG 488

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +      IL +M Y  +  +A  YN+IID Y ++   E+       M  SG     I T 
Sbjct: 489 KIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSG-VSASIVTY 547

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N ++     S  I++ E+        G++ D+ + N +  +    G  DK   ++  M K
Sbjct: 548 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 607

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               PT+ T + ++     AG +  ME  +++M H+ ++P+S  Y  +V AY +     K
Sbjct: 608 YGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSK 667

Query: 260 VDSILRQVENSDVILD 275
           V S+ +++    +  D
Sbjct: 668 VASLKKEMSEKGIAFD 683



 Score = 44.3 bits (103), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P++ + N+++E+    G    +   F  +   G +P++  +  +V A   AG +    +
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 263 ILRQVENSD--VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           +LR++  S+     D   +N +I+   ++G      ++F  M +    P+ IT+ TMI  
Sbjct: 179 MLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDG 238

Query: 321 YNALGMTEAAQNLENKMI 338
           +   G  EA   L ++M+
Sbjct: 239 HVKGGDLEAGFRLRDQML 256


>gi|357519615|ref|XP_003630096.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524118|gb|AET04572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 635

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 8/327 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G +P   VY +L+SA+     +S  L +A      MK+ 
Sbjct: 126 VMGKKGQIRLAMWLFSEMRNTGCRPDTSVYNSLISAHLHSRDKSKALVKALGYFEKMKTT 185

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             CKP++ TY+IL+++  +    + +  +  ++    +     T+N ++DGYGK     E
Sbjct: 186 ERCKPNIVTYNILLRAFAQARDVNQVNYLFKDLDESSVSPDIYTFNGVMDGYGKNGMIRE 245

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           MES    M +S     D+ T N +I +YG     +KME+ +   +    K  + T N + 
Sbjct: 246 MESVLVRM-KSNQVKLDLITYNLLIDSYGKKQQFDKMEQVFKSLSRSKEKPTLPTFNSMI 304

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A + DK  +V   M    + P+ VT+  +I  +G  G +    E F ++    + 
Sbjct: 305 LNYGKARLKDKAENVFQNMTDMGYTPSFVTHESLIHMYGLCGCVSNAVELFDQLIESKVP 364

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
               T  +++  Y   GL  + DS+  + ++  +  D   +  +  AY +A   E + +L
Sbjct: 365 IKVSTLNAMLDVYCINGLQQEADSLFTRAKSIKIFPDATTYKLLYKAYTKANSKELLDKL 424

Query: 299 FLTMKERHCVPDNITFATMIQAYNALG 325
              M +   +P+   F   + A  A+G
Sbjct: 425 LKQMDKDSVIPNKRFF---LDALGAIG 448



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 143/314 (45%), Gaps = 11/314 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           VY+ L+S  G+ G +  A    ++M++   C+PD   Y+ LI +    H  D  + ++  
Sbjct: 119 VYSKLISVMGKKGQIRLAMWLFSEMRNTG-CRPDTSVYNSLISA--HLHSRDKSKALVKA 175

Query: 91  MSYL-------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + Y          + + VTYN ++  + +A+   ++   F  + ES    PDI+T N ++
Sbjct: 176 LGYFEKMKTTERCKPNIVTYNILLRAFAQARDVNQVNYLFKDLDESS-VSPDIYTFNGVM 234

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             YG +G I +ME          VK D+ T N+L  SYG+   +DKM  V   + +    
Sbjct: 235 DGYGKNGMIREMESVLVRMKSNQVKLDLITYNLLIDSYGKKQQFDKMEQVFKSLSRSKEK 294

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT+ T+N +I  +GKA   +K E  F+ M   G  P+ +T+ SL+  Y   G +     +
Sbjct: 295 PTLPTFNSMILNYGKARLKDKAENVFQNMTDMGYTPSFVTHESLIHMYGLCGCVSNAVEL 354

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             Q+  S V +     N ++  Y   G  ++   LF   K     PD  T+  + +AY  
Sbjct: 355 FDQLIESKVPIKVSTLNAMLDVYCINGLQQEADSLFTRAKSIKIFPDATTYKLLYKAYTK 414

Query: 324 LGMTEAAQNLENKM 337
               E    L  +M
Sbjct: 415 ANSKELLDKLLKQM 428



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           +L +  G+   + +   V  +MQ+ R++      Y+ +I   GK G I      F +M++
Sbjct: 86  LLFEELGKHDKWLQCLEVFRWMQRQRWYIADNGVYSKLISVMGKKGQIRLAMWLFSEMRN 145

Query: 235 RGMKPNSITYCSLVSAY----SKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQA 289
            G +P++  Y SL+SA+     K+  ++K      +++ ++    +   +N ++ A+ QA
Sbjct: 146 TGCRPDTSVYNSLISAHLHSRDKSKALVKALGYFEKMKTTERCKPNIVTYNILLRAFAQA 205

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346
            DV ++  LF  + E    PD  TF  ++  Y   GM    + +E+ ++ MK N  K
Sbjct: 206 RDVNQVNYLFKDLDESSVSPDIYTFNGVMDGYGKNGMI---REMESVLVRMKSNQVK 259


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 162/380 (42%), Gaps = 57/380 (15%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +   M+ +G  P    Y+ ++     +  ++ AF    +MK  +   PDVYTY+I
Sbjct: 471 EKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKG-TGVVPDVYTYTI 529

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI   +K          L EM   G E + VTY T+I  Y KAKK       F  M+ + 
Sbjct: 530 LIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMI-AK 588

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF----------------NLMGVKADIQTL 174
           GC P++ T  ++I  Y  SGNIEK  + Y                   N +  K ++ T 
Sbjct: 589 GCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTY 648

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
             L     +A      R +++ M      P  + Y+ +I+ F KA  +++ +E F KM  
Sbjct: 649 GALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVE 708

Query: 235 RGMKPNSITYCSLVSAY---SKAGLIMKVDSILRQVENS---DVILDTPF---------- 278
           RG  PN  TY SL+       +  L++KV S  + +ENS   ++++ T            
Sbjct: 709 RGYNPNVYTYSSLIDRLFKDKRLDLVLKVLS--KMLENSCAPNIVIYTEMIDGLSKVAKT 766

Query: 279 ---------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
                                +  +I  +G+AG V+K  ELF  M  + C P+ +T+  +
Sbjct: 767 DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVL 826

Query: 318 IQAYNALGMTEAAQNLENKM 337
           I    A G  + A  L  +M
Sbjct: 827 INHCCATGHLDEAYALLEEM 846



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 160/351 (45%), Gaps = 16/351 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + + A  L E M  DG +P+  VY AL+  + ++  LDEA    + M       P
Sbjct: 655 LCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVE-RGYNP 713

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +VYTYS LI    K  R DL+ K+L++M       + V Y  +IDG  K  K +E     
Sbjct: 714 NVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDE-AYKL 772

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+E  GC P++ T  +MI  +G +G ++K  + + E    G   +  T  +L      
Sbjct: 773 MLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCA 832

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFKKMKHRGMK 238
            G  D+  ++++ M++ ++   V +Y  VIE + +      G +E++E+        G  
Sbjct: 833 TGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEK-------NGSA 885

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP--FFNCIISAYGQAGDVEKMG 296
           P  + Y  L+  + KAG +     + ++V ++ + +      +  +I ++  A  ++   
Sbjct: 886 PTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAF 945

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
           ELF  M     +PD  TF  ++     +   E A  L + +  M  N  ++
Sbjct: 946 ELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQMDINWLRR 996



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 162/360 (45%), Gaps = 36/360 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+CK+      +  +M+++G  PS  ++ +LV AY +S     A+  +  M+   +CKP
Sbjct: 359 LGRCKR------ILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKC-ECKP 411

Query: 64  DVYTYSILIKS-CTKFH-----RFDLIEKILAEMSYLGI---ECSAVTYNTIIDGYGKAK 114
               Y+ILI S C+         F+L EK   EM   G    + + V++   + G+GK  
Sbjct: 412 GYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGK-- 469

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
            FE+       M+ +G   PD  T + +I    N+  +E     + E    GV  D+ T 
Sbjct: 470 -FEKAYKVIHEMMGNGFV-PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTY 527

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
            IL   + +AG+  +  + +D M +    PTVVTY  +I  + KA  +    E F+ M  
Sbjct: 528 TILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIA 587

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI---------ISA 285
           +G  PN ITY +L+  Y K+G I K   I  ++     I D   +  I         +  
Sbjct: 588 KGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVT 647

Query: 286 YG-------QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           YG       +A  V+   +L  TM    C P+ I +  +I  +      + AQ + +KM+
Sbjct: 648 YGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMV 707



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 151/346 (43%), Gaps = 56/346 (16%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---- 61
           K K+   A+ LFE+M++ G  P+V  YTAL+  Y +SG +++A      M+  +D     
Sbjct: 571 KAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVD 630

Query: 62  -----------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
                      KP+V TY  L+    K H+      +L  M   G E + + Y+ +IDG+
Sbjct: 631 MYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGF 690

Query: 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
            KA K +E +  F  MVE G  +P+++T +S+I            ++ + +  L      
Sbjct: 691 CKAAKLDEAQEVFHKMVERGY-NPNVYTYSSLI------------DRLFKDKRL------ 731

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
                            D +  V+  M +    P +V Y  +I+   K    ++  +   
Sbjct: 732 -----------------DLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLML 774

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            M+ +G KPN +TY +++  + KAG + K   + R++ +     +   +  +I+     G
Sbjct: 775 MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATG 834

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYN-----ALGMTEAAQ 331
            +++   L   MK+ +      ++  +I+ Y      +LG+ E  +
Sbjct: 835 HLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVE 880



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 126/323 (39%), Gaps = 51/323 (15%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P+  +Y  ++S   ++   +EA   +N M+S S C P+V TY IL+  C    +    ++
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTS-CIPNVQTYRILLCGCLNKKQLGRCKR 364

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           IL+ M   G   S   +N+++  Y K+  F         M E   C P     N +I + 
Sbjct: 365 ILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKM-EKCECKPGYVVYNILIGSI 423

Query: 147 GNSGNI------EKMEKWYNEFNLMGVKADIQTLNILTKSYGRA----GMYDKMRSVMDF 196
            + G +      E  EK YNE  ++     +  +N++  S+ R     G ++K   V+  
Sbjct: 424 CSGGELPGPVTFELAEKAYNE--MLSAGTVLNKVNVV--SFARCLCGFGKFEKAYKVIHE 479

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M    F P   TY+ VI     A  +E     FK+MK  G+ P+  TY  L         
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTIL--------- 530

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                                     I  + +AG +++       M    C P  +T+ T
Sbjct: 531 --------------------------IDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTT 564

Query: 317 MIQAYNALGMTEAAQNLENKMIA 339
           +I AY        A  L   MIA
Sbjct: 565 LIHAYLKAKKVSVANELFELMIA 587



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 148/389 (38%), Gaps = 79/389 (20%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G KP+   Y ALV  + ++  LD A     +M  +     D +T     ++  K  ++  
Sbjct: 236 GYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELG-LSMDEFTLGFFAQALCKVGKWRE 294

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-------MESS-------------- 122
              ++ +  ++    + + YN +I G  +A  FEE       M S+              
Sbjct: 295 ALSLIEKEDFVP---NTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLC 351

Query: 123 -------------FSAMVESGGCHPDIFTLNSMISAYGNSGN-------IEKMEKW---- 158
                          +M+ + GC+P     NS++ AY  S +       ++KMEK     
Sbjct: 352 GCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKP 411

Query: 159 -YNEFNLM-------GVKADIQTLNILTKSYGRA----------------------GMYD 188
            Y  +N++       G      T  +  K+Y                         G ++
Sbjct: 412 GYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFE 471

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K   V+  M    F P   TY+ VI     A  +E     FK+MK  G+ P+  TY  L+
Sbjct: 472 KAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILI 531

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             +SKAG+I +  + L ++           +  +I AY +A  V    ELF  M  + C 
Sbjct: 532 DCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCF 591

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKM 337
           P+ IT+  +I  Y   G  E A  +  +M
Sbjct: 592 PNVITYTALIDGYCKSGNIEKACQIYARM 620



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 131/342 (38%), Gaps = 40/342 (11%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           L+    ++GL + A   +  +K     KP   TY+ L++   +  + D  + +  EMS L
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFG-YKPTRMTYNALVQVFLRADKLDTAQLVHREMSEL 270

Query: 95  GIE-------------C-------------------SAVTYNTIIDGYGKAKKFEEMESS 122
           G+              C                   + + YN +I G  +A  FEE    
Sbjct: 271 GLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDF 330

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M  S  C P++ T   ++    N   + + ++  +     G        N L  +Y 
Sbjct: 331 LNRM-RSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYC 389

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI------EKMEEYFKKMKHRG 236
           ++  +     ++  M+K    P  V YNI+I +    G +      E  E+ + +M   G
Sbjct: 390 KSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAG 449

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
              N +   S        G   K   ++ ++  +  + DT  ++ +I     A  VE   
Sbjct: 450 TVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAF 509

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            LF  MK    VPD  T+  +I  ++  G+ + A N  ++M+
Sbjct: 510 FLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMV 551



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
           + LN+L +   R G+++     +  ++   + PT +TYN +++ F +A  ++  +   ++
Sbjct: 207 KLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHRE 266

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M   G+  +  T      A  K G   K    L  +E  D + +T  +N +IS   +A  
Sbjct: 267 MSELGLSMDEFTLGFFAQALCKVG---KWREALSLIEKEDFVPNTILYNKMISGLCEASF 323

Query: 292 VEKMGELFLTMKERHCVPDNITFATMI 318
            E+  +    M+   C+P+  T+  ++
Sbjct: 324 FEEAMDFLNRMRSTSCIPNVQTYRILL 350



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/250 (18%), Positives = 93/250 (37%), Gaps = 39/250 (15%)

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           ++LI+ C +   +++  + L  +   G + + +TYN ++  + +A K +  +     M E
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSE 269

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                                               +G+  D  TL    ++  + G   
Sbjct: 270 ------------------------------------LGLSMDEFTLGFFAQALCKVG--- 290

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K R  +  ++K  F P  + YN +I    +A   E+  ++  +M+     PN  TY  L+
Sbjct: 291 KWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILL 350

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                   + +   IL  +           FN ++ AY ++ D     +L   M++  C 
Sbjct: 351 CGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECK 410

Query: 309 PDNITFATMI 318
           P  + +  +I
Sbjct: 411 PGYVVYNILI 420


>gi|297792331|ref|XP_002864050.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
 gi|297309885|gb|EFH40309.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
          Length = 723

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 155/307 (50%), Gaps = 3/307 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +FE M   G+K S DV+  LV ++   GL +EA     +M+     + +   Y+ L+ + 
Sbjct: 331 IFEKMSDKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEK-KGIRSNTIVYNTLMDAY 389

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K +  + +E + AE+   G++ +A TYN ++D Y +  + + +E+    M E  G  P+
Sbjct: 390 NKSNHIEEVEGLFAEIKAKGLKPTAATYNILMDAYARRMQPDIVETLLREM-EDLGLEPN 448

Query: 136 IFTLNSMISAYGNSGNIEKME-KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           + +   +ISAYG +  +  M    +     +G+K    +   L  +Y  +G ++K  +  
Sbjct: 449 VKSFTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASF 508

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + M      P+V TY  +++ F ++G  EK+ E +K M    +K   ITY +L+  ++K 
Sbjct: 509 EEMWMEGIKPSVETYTSLLDAFRRSGDTEKLMEIWKLMLREKIKGTRITYNTLLDGFAKQ 568

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           GL ++   ++ +     +      +N +++AY + G   K+ +L   M   +  PD+IT+
Sbjct: 569 GLYIEARDVVSEFGKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITY 628

Query: 315 ATMIQAY 321
           +TMI A+
Sbjct: 629 STMIYAF 635



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 155/307 (50%), Gaps = 1/307 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A ++   M   G++ +  VY  L+ AY +S  ++E      ++K+    KP   TY+I
Sbjct: 361 EEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFAEIKA-KGLKPTAATYNI 419

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +  + D++E +L EM  LG+E +  ++  +I  YG+ KK  +M +     ++  
Sbjct: 420 LMDAYARRMQPDIVETLLREMEDLGLEPNVKSFTCLISAYGRTKKMSDMAADAFLRMKKV 479

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P   +  ++I AY  SG  EK    + E  + G+K  ++T   L  ++ R+G  +K+
Sbjct: 480 GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMWMEGIKPSVETYTSLLDAFRRSGDTEKL 539

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M +     T +TYN +++ F K G   +  +   +    G++P+ +TY  L++A
Sbjct: 540 MEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFGKMGLQPSVMTYNMLMNA 599

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y++ G   K+  +L+++   ++  D+  ++ +I A+ +  D ++       M +   VPD
Sbjct: 600 YARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPD 659

Query: 311 NITFATM 317
             ++  +
Sbjct: 660 PRSYEKL 666



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 143/307 (46%), Gaps = 4/307 (1%)

Query: 29  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKI 87
           V +Y A +S    S   D+A+     M  + +  PD  T +I+I +  K  R    + +I
Sbjct: 273 VRLYNAAISGLSASQRYDDAWEVYEAMNKI-NVFPDNVTCAIMITTMRKAGRSAKEVWEI 331

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             +MS  G++ S   +  ++  +   +  +E        +E  G   +    N+++ AY 
Sbjct: 332 FEKMSDKGVKWSQDVFGGLVKSFCD-EGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYN 390

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            S +IE++E  + E    G+K    T NIL  +Y R    D + +++  M+     P V 
Sbjct: 391 KSNHIEEVEGLFAEIKAKGLKPTAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVK 450

Query: 208 TYNIVIETFGKAGHIEKME-EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           ++  +I  +G+   +  M  + F +MK  G+KP+S +Y +L+ AYS +G   K  +   +
Sbjct: 451 SFTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEE 510

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +    +      +  ++ A+ ++GD EK+ E++  M         IT+ T++  +   G+
Sbjct: 511 MWMEGIKPSVETYTSLLDAFRRSGDTEKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGL 570

Query: 327 TEAAQNL 333
              A+++
Sbjct: 571 YIEARDV 577



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 1/153 (0%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK-MEEY 228
           D++  N        +  YD    V + M K   FP  VT  I+I T  KAG   K + E 
Sbjct: 272 DVRLYNAAISGLSASQRYDDAWEVYEAMNKINVFPDNVTCAIMITTMRKAGRSAKEVWEI 331

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F+KM  +G+K +   +  LV ++   GL  +   I  ++E   +  +T  +N ++ AY +
Sbjct: 332 FEKMSDKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNK 391

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +  +E++  LF  +K +   P   T+  ++ AY
Sbjct: 392 SNHIEEVEGLFAEIKAKGLKPTAATYNILMDAY 424


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 176/382 (46%), Gaps = 46/382 (12%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSD---GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 55
           +++ G C   + ++A  L  +M  D   G  P V  YT +++ + + G  D+A+ST ++M
Sbjct: 163 ILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEM 222

Query: 56  --KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113
             + +S   PDV TYS +I +  K    D   ++L  M   G+  + +TYN+I+ GY  +
Sbjct: 223 LDRRIS---PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSS 279

Query: 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
           ++ +E    F   + S G  PD+ T NS++     +G   +  K ++     G++ DI T
Sbjct: 280 EQPKE-AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIAT 338

Query: 174 LNILTKSYGRAGMYDKMRSVMDF-----------------------------------MQ 198
              L + Y   G   +M +++D                                    M+
Sbjct: 339 YCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMR 398

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +    P VVTY  VI    K+G ++    YF++M   G+ PN I Y SL+ +        
Sbjct: 399 QHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWD 458

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           K + ++ ++ +  + L+T FFN II ++ + G V +  +LF  M      P+ IT++T+I
Sbjct: 459 KAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLI 518

Query: 319 QAYNALGMTEAAQNLENKMIAM 340
             Y   G  + A  L + M ++
Sbjct: 519 DGYCLAGKMDEATKLLSSMFSV 540



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 147/318 (46%), Gaps = 8/318 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            K ++ ++A L+F  M   GL P+V  Y A++    +SG +D+A      M       P+
Sbjct: 382 AKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMID-EGLTPN 440

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           +  Y+ LI S   F ++D  E+++ EM   GI  + + +N+II  + K  +  E E  F 
Sbjct: 441 IIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFD 500

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            MV  G   P++ T +++I  Y  +G +++  K  +    +G+K D  T N L   Y R 
Sbjct: 501 LMVRIG-VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRV 559

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              D   ++   M      P ++TYNI+++           +E +  +   G +    TY
Sbjct: 560 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTY 619

Query: 245 CSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G  ++  +LF  
Sbjct: 620 NIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAA 676

Query: 302 MKERHCVPDNITFATMIQ 319
           +     VPD  T++ M +
Sbjct: 677 LSANGLVPDVRTYSLMAE 694



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 149/323 (46%), Gaps = 7/323 (2%)

Query: 2   VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 59  SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
             C PDV++ +IL+K  C +    + +E   ++A+    G     V+Y T+I+G+ K   
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
            ++  S++  M++     PD+ T +S+I+A      ++K  +        GV  +  T N
Sbjct: 212 SDKAYSTYHEMLDR-RISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYN 270

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +   Y  +    +    +  M+     P VVTYN +++   K G   +  + F  M  R
Sbjct: 271 SILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKR 330

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G++P+  TYC+L+  Y+  G ++++ ++L  +  + +  D   FN +I AY +   V++ 
Sbjct: 331 GLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEA 390

Query: 296 GELFLTMKERHCVPDNITFATMI 318
             +F  M++    P+ +T+  +I
Sbjct: 391 MLVFSKMRQHGLNPNVVTYGAVI 413



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 145/339 (42%), Gaps = 37/339 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 61
           +L K    + A L FE M+ +GL P++ VYT+L+ +       D+A   I +M     C 
Sbjct: 415 ILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICL 474

Query: 62  ---------------------------------KPDVYTYSILIKSCTKFHRFDLIEKIL 88
                                            KP+V TYS LI       + D   K+L
Sbjct: 475 NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLL 534

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           + M  +G++   VTYNT+I+GY +  + ++  + F  MV SG   P+I T N ++    +
Sbjct: 535 SSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG-VSPNIITYNIILQGLFH 593

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVV 207
           +      ++ Y      G + ++ T NI+     +  + D+ +R   +         T  
Sbjct: 594 TRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR- 652

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           T+NI+I    K G  ++ ++ F  +   G+ P+  TY  +     + GL+ ++D +   +
Sbjct: 653 TFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSM 712

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           E +    ++   N I+    Q GD+ + G     + E+H
Sbjct: 713 EENGCTANSRMLNSIVRKLLQRGDITRAGTYLSMIDEKH 751



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 133/352 (37%), Gaps = 43/352 (12%)

Query: 11  EQASLLFEVMLSDGLKPSV-DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK--PDVYT 67
           E A  +FE +L  G   S+  +  AL      S     A S  N M      K  P V+T
Sbjct: 32  EDARHVFEELLRRGRGASIYGLNRALADVARHSPA--AAVSRYNRMARAGAGKVTPTVHT 89

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE--------- 118
           Y ILI  C +  R DL    L  +   G    A+T+  ++ G    K+  +         
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 119 -----MESSFSAMV------------------------ESGGCHPDIFTLNSMISAYGNS 149
                M   FS  +                          GG  PD+ +  ++I+ +   
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKE 209

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G+ +K    Y+E     +  D+ T + +  +  +    DK   V+  M K    P  +TY
Sbjct: 210 GDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTY 269

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N ++  +  +   ++   + KKM+  G++P+ +TY SL+    K G   +   I   +  
Sbjct: 270 NSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTK 329

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             +  D   +  ++  Y   G + +M  L   M      PD+  F  +I AY
Sbjct: 330 RGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAY 381


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 161/335 (48%), Gaps = 37/335 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K  + A  LF+ M + G++P+V  Y++L+S     G   +A   ++DM       P
Sbjct: 266 LCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 324

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV+T+S LI +  K  +    EK+  EM    I+ S VTY+++I+G+    + +E +  F
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384

Query: 124 SAMVESGGCHPDIFTLNSMISAY----------------------GNS------------ 149
             MV S  C PD+ + +++I  +                      GN+            
Sbjct: 385 EFMV-SKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQ 443

Query: 150 -GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G+ +  ++ + E    GV  +I T N L     + G  +K   V +++Q+    PT+ T
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 503

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YNI+IE   KAG +E   + F  +  +G+KP+ + Y +++S + + G   + D++ ++++
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
               + ++  +N +I A  + GD E   EL   M+
Sbjct: 564 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEMR 598



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 153/325 (47%), Gaps = 2/325 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +  +A  L + M++ G +P +  Y  +V+   + G  D AF  +N M+     +P V  Y
Sbjct: 201 KASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQ-GKLEPGVLIY 259

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I    K    D    +  EM   GI  + VTY+++I       ++ +     S M+E
Sbjct: 260 TTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
               +PD+FT +++I A+   G + + EK Y+E     +   I T + L   +      D
Sbjct: 320 RK-INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           + + + +FM  +  FP VV+Y+ +I+ F KA  +++  E F++M  RG+  N++TY +L+
Sbjct: 379 EAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               +AG       I +++ +  V  +   +N ++    + G +EK   +F  ++     
Sbjct: 439 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 498

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
           P   T+  MI+     G  E   +L
Sbjct: 499 PTIYTYNIMIEGMCKAGKVEDGWDL 523



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 148/332 (44%), Gaps = 37/332 (11%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+  +A  L + M   G +P+   +  L+          EA + I+ M +   C+PD+ T
Sbjct: 165 KRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVA-KGCQPDLVT 223

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y +++    K    DL   +L +M    +E   + Y TIIDG  K K  ++  + F  M 
Sbjct: 224 YGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEM- 282

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+ G  P++ T +S+IS   N G      +W                             
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYG------RWS---------------------------- 308

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D  R + D ++++   P V T++ +I+ F K G + + E+ + +M  R + P+ +TY SL
Sbjct: 309 DASRLLSDMIERKIN-PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++ +     + +   +   + +     D   ++ +I  + +A  V++  ELF  M +R  
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           V + +T+ T+IQ     G  + AQ +  +M++
Sbjct: 428 VGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVS 459



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 143/311 (45%), Gaps = 2/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF  M+     PS+  ++ L+SA  +    D   S    M+++     + YTYSI
Sbjct: 63  DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG-MPHNHYTYSI 121

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  +  L   +L +M  LG E + VT +++++GY  +K+  E  +    M  + 
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT- 180

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+  T N++I          +     +     G + D+ T  ++     + G  D  
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M++    P V+ Y  +I+   K  H++     FK+M+ +G++PN +TY SL+S 
Sbjct: 241 FILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G       +L  +    +  D   F+ +I A+ + G + +  +L+  M +R   P 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360

Query: 311 NITFATMIQAY 321
            +T++++I  +
Sbjct: 361 IVTYSSLINGF 371



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 2/233 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +FE M+S    P V  Y+ L+  + ++  +DE      +M S      +  TY+ 
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREM-SQRGLVGNTVTYTT 436

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI+   +    D+ ++I  EM   G+  + +TYNT++DG  K  K E+    F  +  S 
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P I+T N MI     +G +E     +   +L GVK D+   N +   + R G  ++ 
Sbjct: 497 -MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            ++   M++    P    YN +I    + G  E   E  K+M+  G   ++ T
Sbjct: 556 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 608



 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 57/130 (43%)

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY+I+I  F +   +        KM   G +PN +T  SL++ Y  +  I +  +++ Q+
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
             +    +T  FN +I          +   L   M  + C PD +T+  ++      G T
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 328 EAAQNLENKM 337
           + A  L NKM
Sbjct: 238 DLAFILLNKM 247


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 158/331 (47%), Gaps = 4/331 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-S 69
           ++A   +  ML  G+ P V  Y+++++A  ++  +D+A   +N M   +   PD  TY S
Sbjct: 218 DKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK-NGVMPDCMTYNS 276

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           IL   C+     + I   L +M   G+E + VTY+++++   K  +  E    F +M + 
Sbjct: 277 ILHGYCSSGQPKEAI-GTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G   PDI T  +++  Y   G + +M    +     G++ D    NIL  +Y +    D+
Sbjct: 336 G-LEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQ 394

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              V   M++    P VV Y  VI+   K+G ++    YF++M   G+ PN I Y SL+ 
Sbjct: 395 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIH 454

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
                    K + ++ ++ +  + L+T FFN II ++ + G V +  +LF  M      P
Sbjct: 455 GLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 514

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           D IT+ T+I      G  + A  L   M+++
Sbjct: 515 DIITYNTLIDGCCLAGKMDEATKLLASMVSV 545



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 154/342 (45%), Gaps = 11/342 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            K ++ +QA L+F  M   GL P+V  Y  ++    +SG +D+A      M       P+
Sbjct: 387 AKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMID-EGLTPN 445

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           +  Y+ LI       ++D  E+++ EM   GI  + + +N+IID + K  +  E E  F 
Sbjct: 446 IIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFD 505

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            MV  G   PDI T N++I     +G +++  K       +GVK DI T   L   Y R 
Sbjct: 506 LMVRIG-VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRV 564

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              D   ++   M      P ++TYNI+++           +E +  +   G +    TY
Sbjct: 565 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTY 624

Query: 245 CSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G +++  +LF  
Sbjct: 625 NIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAA 681

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
                 VPD  T++ M +     G  E    L++  ++M+EN
Sbjct: 682 HSANGLVPDVRTYSLMAENLIEQGSLE---ELDDLFLSMEEN 720



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 143/339 (42%), Gaps = 37/339 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 61
           +L K    + A L FE M+ +GL P++ VYT+L+         D+A   I +M     C 
Sbjct: 420 VLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL 479

Query: 62  ---------------------------------KPDVYTYSILIKSCTKFHRFDLIEKIL 88
                                            KPD+ TY+ LI  C    + D   K+L
Sbjct: 480 NTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLL 539

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           A M  +G++   VTY T+I+GY +  + ++  + F  MV SG   P+I T N ++    +
Sbjct: 540 ASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG-VSPNIITYNIILQGLFH 598

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVV 207
           +      ++ Y      G + ++ T NI+     +  + D+ +R   +         T  
Sbjct: 599 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR- 657

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           T+NI+I    K G +++ ++ F      G+ P+  TY  +     + G + ++D +   +
Sbjct: 658 TFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSM 717

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           E +    D+   N I+    Q GD+ + G     + E+H
Sbjct: 718 EENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKH 756



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 135/300 (45%), Gaps = 4/300 (1%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDL 83
           + P+V  Y  L+    ++G LD  F+ + ++      + D  T++ L+K  C      D 
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVK-KGFRVDAITFTPLLKGLCADKRTSDA 146

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNS 141
           ++ +L  M+ LG      +YN ++ G     + +E       M +   GG  PD+ + N+
Sbjct: 147 MDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNT 206

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +++ +   G+ +K    Y+E    G+  D+ T + +  +  +A   DK   V++ M K  
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P  +TYN ++  +  +G  ++     KKM+  G++PN +TY SL++   K G   +  
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            I   +    +  D   +  ++  Y   G + +M  L   M      PD+  F  +I AY
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAY 386



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 155/335 (46%), Gaps = 7/335 (2%)

Query: 2   VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 59  SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
             C PDV++Y+ L+K  C +    + +E   ++A+    G     V+YNT+++G+ K   
Sbjct: 157 LGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGD 216

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
            ++  S++  M++  G  PD+ T +S+I+A   +  ++K  +  N     GV  D  T N
Sbjct: 217 SDKAYSTYHEMLDR-GILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 275

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +   Y  +G   +    +  M+     P VVTY+ ++    K G   +  + F  M  R
Sbjct: 276 SILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKR 335

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G++P+  TY +L+  Y+  G ++++ ++L  +  + +  D   FN +I AY +   V++ 
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQA 395

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
             +F  M++    P+ + + T+I      G  + A
Sbjct: 396 MLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 430


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 176/382 (46%), Gaps = 46/382 (12%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSD---GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 55
           +++ G C   + ++A  L  +M  D   G  P V  YT +++ + + G  D+A+ST ++M
Sbjct: 163 ILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEM 222

Query: 56  --KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113
             + +S   PDV TYS +I +  K    D   ++L  M   G+  + +TYN+I+ GY  +
Sbjct: 223 LDRRIS---PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSS 279

Query: 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
           ++ +E    F   + S G  PD+ T NS++     +G   +  K ++     G++ DI T
Sbjct: 280 EQPKE-AIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIAT 338

Query: 174 LNILTKSYGRAGMYDKMRSVMDF-----------------------------------MQ 198
              L + Y   G   +M +++D                                    M+
Sbjct: 339 YCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMR 398

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +    P VVTY  VI    K+G ++    YF++M   G+ PN I Y SL+ +        
Sbjct: 399 QHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWD 458

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           K + ++ ++ +  + L+T FFN II ++ + G V +  +LF  M      P+ IT++T+I
Sbjct: 459 KAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLI 518

Query: 319 QAYNALGMTEAAQNLENKMIAM 340
             Y   G  + A  L + M ++
Sbjct: 519 DGYCLAGKMDEATKLLSSMFSV 540



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 156/342 (45%), Gaps = 11/342 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            K ++ ++A L+F  M   GL P+V  Y A++    +SG +D+A      M       P+
Sbjct: 382 AKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMID-EGLTPN 440

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           +  Y+ LI S   F ++D  E+++ EM   GI  + + +N+II  + K  +  E E  F 
Sbjct: 441 IIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFD 500

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            MV  G   P++ T +++I  Y  +G +++  K  +    +G+K D  T N L   Y R 
Sbjct: 501 LMVRIG-VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRV 559

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              D   ++   M      P ++TYNI+++           +E +  +   G +    TY
Sbjct: 560 SRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTY 619

Query: 245 CSLVSAYSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             ++    K  L    D  LR  +N   +D+ L+T  FN +I A  + G  ++  +LF+ 
Sbjct: 620 NIILHGLCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVA 676

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
                 VP+  T+  M +     G+ E    L+    +M++N
Sbjct: 677 FSSNGLVPNYWTYRLMAENIIGQGLLE---ELDQLFFSMEDN 715



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 150/334 (44%), Gaps = 4/334 (1%)

Query: 2   VMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C  +QP++A    + M SDG++P V  Y +L+    ++G   EA    + M    
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTK-R 330

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +PD+ TY  L++          +  +L  M   GI      +N +I  Y K +K +E 
Sbjct: 331 GLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEA 390

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              FS M + G  +P++ T  ++I     SG+++    ++ +    G+  +I     L  
Sbjct: 391 MLVFSKMRQHG-LNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIH 449

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           S      +DK   ++  M  R      + +N +I +  K G + + E+ F  M   G+KP
Sbjct: 450 SLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKP 509

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N ITY +L+  Y  AG + +   +L  + +  +  D   +N +I+ Y +   ++    LF
Sbjct: 510 NVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALF 569

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             M      P+ IT+  ++Q       T AA+ L
Sbjct: 570 KEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 145/339 (42%), Gaps = 37/339 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 61
           +L K    + A L FE M+ +GL P++ VYT+L+ +       D+A   I +M     C 
Sbjct: 415 ILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICL 474

Query: 62  ---------------------------------KPDVYTYSILIKSCTKFHRFDLIEKIL 88
                                            KP+V TYS LI       + D   K+L
Sbjct: 475 NTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLL 534

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           + M  +G++   VTYNT+I+GY +  + ++  + F  MV SG   P+I T N ++    +
Sbjct: 535 SSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG-VSPNIITYNIILQGLFH 593

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK-MRSVMDFMQKRFFFPTVV 207
           +      ++ Y      G + ++ T NI+     +  + D+ +R   +         T  
Sbjct: 594 TRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETR- 652

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           T+NI+I    K G  ++ ++ F      G+ PN  TY  +       GL+ ++D +   +
Sbjct: 653 TFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSM 712

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           E++   +D+   N I+    Q G++ + G     + E+H
Sbjct: 713 EDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKH 751



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 149/323 (46%), Gaps = 7/323 (2%)

Query: 2   VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 59  SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
             C PDV++ +IL+K  C +    + +E   ++A+    G     V+Y T+I+G+ K   
Sbjct: 152 LSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGD 211

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
            ++  S++  M++     PD+ T +S+I+A      ++K  +        GV  +  T N
Sbjct: 212 SDKAYSTYHEMLDR-RISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYN 270

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +   Y  +    +    +  M+     P VVTYN +++   K G   +  + F  M  R
Sbjct: 271 SILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKR 330

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G++P+  TYC+L+  Y+  G ++++ ++L  +  + +  D   FN +I AY +   V++ 
Sbjct: 331 GLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEA 390

Query: 296 GELFLTMKERHCVPDNITFATMI 318
             +F  M++    P+ +T+  +I
Sbjct: 391 MLVFSKMRQHGLNPNVVTYGAVI 413



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 123/269 (45%), Gaps = 4/269 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++   CK+    ++  LF++M+  G+KP+V  Y+ L+  Y  +G +DEA   ++ M SV 
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG 541

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KPD  TY+ LI    +  R D    +  EM   G+  + +TYN I+ G    ++    
Sbjct: 542 -MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAA 600

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +  +  + +SG    ++ T N ++     +   ++  + +    L  ++ + +T NI+  
Sbjct: 601 KELYVGITKSG-TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 659

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +  + G  D+ + +          P   TY ++ E     G +E++++ F  M+  G   
Sbjct: 660 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTV 719

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           +S     +V    + G I +  + L  ++
Sbjct: 720 DSGMLNFIVRELLQRGEITRAGTYLSMID 748



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/300 (21%), Positives = 127/300 (42%), Gaps = 4/300 (1%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDL 83
           + P+V  Y  L+    ++G LD  F+ + ++      + +  T++ L+K  C      D 
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVK-KGFRVEAITFTPLLKGLCADKRTSDA 141

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFTLNS 141
           ++ +L  M+ L       +   ++ G     + +E       M +   GG  PD+ +  +
Sbjct: 142 MDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTT 201

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I+ +   G+ +K    Y+E     +  D+ T + +  +  +    DK   V+  M K  
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNG 261

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P  +TYN ++  +  +   ++   + KKM+  G++P+ +TY SL+    K G   +  
Sbjct: 262 VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEAR 321

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            I   +    +  D   +  ++  Y   G + +M  L   M      PD+  F  +I AY
Sbjct: 322 KIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAY 381


>gi|410110129|gb|AFV61144.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           pusilla]
          Length = 381

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 81

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ ++ V +D   F  +I  Y
Sbjct: 201 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVXY 260

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG +     L   +K     PDNI   T I      G  E A
Sbjct: 261 ERAGLIAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 300



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 165/357 (46%), Gaps = 41/357 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 27  IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 85

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 86  VENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 144

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 145 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++  Y 
Sbjct: 202 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVXYE 261

Query: 253 KAGLIMKVDSILRQVENSDVI-LDTPF---------------FNCIISAYGQAGDV---E 293
           +AGLI     +L +++  D I  DT                 F   I A G+  D+   E
Sbjct: 262 RAGLIAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDA-GEVKDITVFE 320

Query: 294 KM-------------GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +M              E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 321 RMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 377



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 135/274 (49%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F E  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLI 63

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M ++ G  P+  + +++++ Y  +    +    ++E   +    D+ T NI+   YG+
Sbjct: 64  SEM-KTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K +++++++++  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D I F TMI  Y   G+   A+ L +++
Sbjct: 243 STGVEIDQILFQTMIVXYERAGLIAHAKRLLHEL 276



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 107/262 (40%), Gaps = 31/262 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++A  LF  M   G++P+V  Y  L+  YG + L  EA      M+   + + +
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQR-KNIEQN 179

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           V TY+ ++    K    +    ++ EM   GIE +++TY+TII  +GK  K       F+
Sbjct: 180 VVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQ 239

Query: 118 EMESS--------FSAMV---ESGGC------------HPDIFTLNSMISAYGNSGNIEK 154
           ++ S+        F  M+   E  G              PD    ++ I     +G IE+
Sbjct: 240 KLRSTGVEIDQILFQTMIVXYERAGLIAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEE 299

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               + +    G   DI     +     +   Y  +  V D M+   +FP      +V+ 
Sbjct: 300 ATYVFRQAIDAGEVKDITVFERMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLN 359

Query: 215 TFGKAGHIEKMEEYFKKMKHRG 236
            +GK    +K  + + +M+  G
Sbjct: 360 AYGKLQEFDKANDVYMEMQEVG 381


>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
 gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
          Length = 519

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 150/314 (47%), Gaps = 11/314 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +Y+ L+S  G+ G +  A    + M++ S CKPD   Y+ LI +    H  D  + +   
Sbjct: 125 IYSKLISVMGRKGQIRMAMWLFSQMRN-SGCKPDTSVYNSLIGA--HLHSRDKSKALAKA 181

Query: 91  MSYL-GIECSA------VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + Y   ++C A      VTYN ++  + +A   ++++  F  + ES    PDI+T N ++
Sbjct: 182 LGYFEKMKCIARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDESV-VSPDIYTYNGVL 240

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AYG +G I++ME           + D+ T NIL  SYGR  ++DKM  V   + +    
Sbjct: 241 DAYGKNGMIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKER 300

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT  T+N +I  +GKA   EK E   KKM+  G KPN +T   L+  Y+    + K   +
Sbjct: 301 PTHPTFNSMITNYGKARLREKAEYVVKKMEELGYKPNYVTQECLIMMYAHCDCVSKARQV 360

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             ++ +S   +     N ++ AY   G   +  +L  T  ++  VP+  T+  + +AY  
Sbjct: 361 FDELVSSQNKVQLSSLNSMLDAYCMNGLHTEADQLLDTALQKCVVPNGSTYKLLYKAYTR 420

Query: 324 LGMTEAAQNLENKM 337
                  Q L  +M
Sbjct: 421 ANDKVLVQKLLKRM 434



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 149/323 (46%), Gaps = 5/323 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++G+  Q   A  LF  M + G KP   VY +L+ A+     +S  L +A      MK +
Sbjct: 132 VMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALAKALGYFEKMKCI 191

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           + C+P + TY+IL+++  +      ++ +  ++    +     TYN ++D YGK    +E
Sbjct: 192 ARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPDIYTYNGVLDAYGKNGMIKE 251

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           MES    M +S  C PD+ T N +I +YG     +KME+ +        +    T N + 
Sbjct: 252 MESVLLRM-KSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKERPTHPTFNSMI 310

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A + +K   V+  M++  + P  VT   +I  +     + K  + F ++     K
Sbjct: 311 TNYGKARLREKAEYVVKKMEELGYKPNYVTQECLIMMYAHCDCVSKARQVFDELVSSQNK 370

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
               +  S++ AY   GL  + D +L       V+ +   +  +  AY +A D   + +L
Sbjct: 371 VQLSSLNSMLDAYCMNGLHTEADQLLDTALQKCVVPNGSTYKLLYKAYTRANDKVLVQKL 430

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
              M ++  VP+   F   ++A+
Sbjct: 431 LKRMNKQGIVPNKKFFLDALEAF 453



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 6/242 (2%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNE 161
           Y+ +I   G+  +       FS M  SG C PD    NS+I A+ +S +  K + K    
Sbjct: 126 YSKLISVMGRKGQIRMAMWLFSQMRNSG-CKPDTSVYNSLIGAHLHSRDKSKALAKALGY 184

Query: 162 FNLMGVKADIQ----TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
           F  M   A  Q    T NIL +++ +AG   ++  +   + +    P + TYN V++ +G
Sbjct: 185 FEKMKCIARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPDIYTYNGVLDAYG 244

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           K G I++ME    +MK +  +P+ IT+  L+ +Y +  +  K++ + + +  S      P
Sbjct: 245 KNGMIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKERPTHP 304

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            FN +I+ YG+A   EK   +   M+E    P+ +T   +I  Y        A+ + +++
Sbjct: 305 TFNSMITNYGKARLREKAEYVVKKMEELGYKPNYVTQECLIMMYAHCDCVSKARQVFDEL 364

Query: 338 IA 339
           ++
Sbjct: 365 VS 366



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 13/193 (6%)

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI-- 213
           ++WY         AD    + L    GR G       +   M+     P    YN +I  
Sbjct: 116 QRWY--------VADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGA 167

Query: 214 --ETFGKAGHIEKMEEYFKKMKHRGM-KPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
              +  K+  + K   YF+KMK     +P  +TY  L+ A+++AG   +VD + + ++ S
Sbjct: 168 HLHSRDKSKALAKALGYFEKMKCIARCQPTIVTYNILLRAFAQAGDTKQVDILFKDLDES 227

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            V  D   +N ++ AYG+ G +++M  + L MK + C PD ITF  +I +Y    + +  
Sbjct: 228 VVSPDIYTYNGVLDAYGKNGMIKEMESVLLRMKSKQCRPDVITFNILIDSYGRKQIFDKM 287

Query: 331 QNLENKMIAMKEN 343
           + +   ++  KE 
Sbjct: 288 EQVFKSLLRSKER 300


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 156/325 (48%), Gaps = 2/325 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +  +A  L + M+  G +P++  Y  +V+   + G +D AF+ +N M++ +  + DV  +
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEADVVIF 188

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I S  K+   D    +  EM   GI  + VTY+++I       ++ +     S M+E
Sbjct: 189 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 248

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
               +P++ T N++I A+   G   + EK +++     +  DI T N L   +      D
Sbjct: 249 KK-INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K + + +FM  +  FP + TYN +I+ F K+  +E   E F++M HRG+  +++TY +L+
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                 G       + +Q+ +  V  D   ++ ++      G +EK  E+F  M++    
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 427

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
            D   + TMI+     G  +   +L
Sbjct: 428 LDIYIYTTMIEGMCKAGKVDDGWDL 452



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 140/304 (46%), Gaps = 2/304 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            AS L   M+   + P++  + AL+ A+ + G   EA    +DM   S   PD++TY+ L
Sbjct: 238 DASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS-IDPDIFTYNSL 296

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D  +++   M          TYNT+I G+ K+K+ E+    F  M   G 
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG- 355

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              D  T  ++I    + G+ +  +K + +    GV  DI T +IL       G  +K  
Sbjct: 356 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 415

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V D+MQK      +  Y  +IE   KAG ++   + F  +  +G+KPN +TY +++S  
Sbjct: 416 EVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 475

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
               L+ +  ++L++++    + D+  +N +I A+ + GD     EL   M+    V D 
Sbjct: 476 CSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 535

Query: 312 ITFA 315
            T  
Sbjct: 536 STIG 539



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 143/332 (43%), Gaps = 37/332 (11%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+   A  L + M+  G +P    +T L+          EA + ++ M     C+P++ T
Sbjct: 94  KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVT 152

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y +++    K    DL   +L +M    IE   V +NTIID   K +  ++  + F  M 
Sbjct: 153 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM- 211

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+ G  P++ T +S+IS   + G      +W +   L+                      
Sbjct: 212 ETKGIRPNVVTYSSLISCLCSYG------RWSDASQLLS--------------------- 244

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                  D ++K+   P +VT+N +I+ F K G   + E+    M  R + P+  TY SL
Sbjct: 245 -------DMIEKKIN-PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 296

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++ +     + K   +   + + D   D   +N +I  + ++  VE   ELF  M  R  
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 356

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           V D +T+ T+IQ     G  + AQ +  +M++
Sbjct: 357 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 388



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 2/295 (0%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           PS+  +  L+SA  +    D   S    M+ +     ++YTY+ILI    +  +  L   
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLG-ISHNLYTYNILINCFCRRSQISLALA 66

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +L +M  LG E S VT +++++GY   K+  +  +    MVE  G  PD  T  ++I   
Sbjct: 67  LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM-GYRPDTITFTTLIHGL 125

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
                  +     +     G + ++ T  ++     + G  D   ++++ M+       V
Sbjct: 126 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADV 185

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V +N +I++  K  H++     FK+M+ +G++PN +TY SL+S     G       +L  
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 245

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +    +  +   FN +I A+ + G   +  +L   M +R   PD  T+ ++I  +
Sbjct: 246 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGF 300



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 115/281 (40%), Gaps = 36/281 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P ++ ++ L+ +  K  +FDL+  +  +M  LGI  +  TYN +I+ + +  +     + 
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M++ G   P I TL+S+++ Y +   I       ++   MG +              
Sbjct: 68  LGKMMKLG-YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYR-------------- 112

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                                P  +T+  +I          +      +M  RG +PN +
Sbjct: 113 ---------------------PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLV 151

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  +V+   K G I    ++L ++E + +  D   FN II +  +   V+    LF  M
Sbjct: 152 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 211

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           + +   P+ +T++++I    + G    A  L + MI  K N
Sbjct: 212 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 149/343 (43%), Gaps = 16/343 (4%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLG  K   +A  +F  + +   +P+   Y +++      G   +     N+M +   C 
Sbjct: 168 MLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCF 227

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DGYGKAKK 115
           PD  TYS LI +  K  R D   ++L EM   G++ +   Y  +I       D +G    
Sbjct: 228 PDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSL 287

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           FEEM   +        C PD+FT   +I   G +G I++   ++ E    G + D   +N
Sbjct: 288 FEEMRHQY--------CRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMN 339

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKH 234
            +    G+AG  D    +   M      P+VVTYN +I+  F       ++  +F++MK 
Sbjct: 340 NMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKE 399

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+ P+S TY  L+  + K   + K   +L +++          +  +I A G+A   + 
Sbjct: 400 SGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 459

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             ELF  +KE         +A MI+     G  + A N+ ++M
Sbjct: 460 ACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEM 502



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 150/323 (46%), Gaps = 3/323 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M     +P V  YT L+   G++G +DEA+    +M+    C+PD    + +I   
Sbjct: 287 LFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQR-EGCRPDTVVMNNMINFL 345

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHP 134
            K  R D   K+  EM  L    S VTYNTII    ++K +  E+ S F  M ESG   P
Sbjct: 346 GKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG-ISP 404

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
             FT + +I  +  +  +EK      E +  G          L  + G+A  YD    + 
Sbjct: 405 SSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 464

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             +++     +   Y ++I+  GKAG ++     F +M   G  P+   Y +L+S  ++ 
Sbjct: 465 QELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLART 524

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G++ +  S +R+++    I D   +N I++   + G   +  E+   MK+    PD +++
Sbjct: 525 GMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSY 584

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
            T++ A +  GM E A  L  +M
Sbjct: 585 NTVLGALSHAGMFEEAAKLMEEM 607



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 135/296 (45%), Gaps = 6/296 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVSDCK 62
           LGK  + + A  LF+ M +    PSV  Y  ++ A  +S     E  S    MK  S   
Sbjct: 345 LGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKE-SGIS 403

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++     
Sbjct: 404 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 123 FSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F  + E+ G     ++ +  MI   G +G ++     ++E N +G   D+   N L    
Sbjct: 464 FQELKENCGSSSARVYAV--MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 521

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R GM D+  S M  MQ+    P + +YNI++    K G   +  E    MK   ++P+ 
Sbjct: 522 ARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDV 581

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           ++Y +++ A S AG+  +   ++ ++       D   ++ I+ A G+  D E  G+
Sbjct: 582 VSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGKV-DHEYTGQ 636



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 102/255 (40%), Gaps = 36/255 (14%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS------------ 149
           TY  +I      +++ EM      MV +  C      L+ ++   GN+            
Sbjct: 125 TYMALIRCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQ 184

Query: 150 -----------------------GNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAG 185
                                  G   K+ + YNE +  G    D  T + L  ++ + G
Sbjct: 185 IKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLG 244

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D    +++ M++    PT   Y ++I  F K   +      F++M+H+  +P+  TY 
Sbjct: 245 RRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYT 304

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+    KAG I +      +++      DT   N +I+  G+AG ++   +LF  M   
Sbjct: 305 ELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTL 364

Query: 306 HCVPDNITFATMIQA 320
            C+P  +T+ T+I+A
Sbjct: 365 RCIPSVVTYNTIIKA 379



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 1/158 (0%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           L+ + +  G A M  K  ++   ++ R   PT   YN +I      G   K+ E + +M 
Sbjct: 162 LSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMS 221

Query: 234 HRGMK-PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
             G   P+++TY +L+SA+ K G       +L +++ + +   T  +  +I+ + +  DV
Sbjct: 222 TEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDV 281

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
                LF  M+ ++C PD  T+  +I+     G  + A
Sbjct: 282 HGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEA 319


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 148/316 (46%), Gaps = 2/316 (0%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C + E    +F++M+++G+KP++  Y AL+ AY   G+  +A      +K  +  +PDV 
Sbjct: 345 CGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQ-NGLRPDVV 403

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +Y+ L+ +  +  + +   +   EM       + V+YN +ID YG A  F+E  S    M
Sbjct: 404 SYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEM 463

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E  G  PD+ +++++++A G    I K++         G+K +I   N    SY   G 
Sbjct: 464 -EKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGD 522

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y K   +   M      P  VTYNI+I    K G   +  ++F+ M    +      Y S
Sbjct: 523 YGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSS 582

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+ +Y K G + + +S    ++ S  + D   +  +I AY   G      +LF  M+   
Sbjct: 583 LICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNT 642

Query: 307 CVPDNITFATMIQAYN 322
             PD I  +++++A N
Sbjct: 643 VQPDAIICSSLMEALN 658



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 153/310 (49%), Gaps = 4/310 (1%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D+Y  ++  + +   +D+A     +M+    CKPD   Y+ LI +  +  ++     I+ 
Sbjct: 156 DIYGMMIRLHARHSQIDQARGLFFEMQEWR-CKPDADIYNSLIHAHARAGQWRWAINIMD 214

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M    I  S  TYN +I+  G A  +++       M  + G  PD+ T N ++SA+ N 
Sbjct: 215 DMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTRN-GVGPDLVTHNIVLSAFKNG 273

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVV 207
               K   ++       +  D  TLNI+     + G Y +   +++ M+++     P VV
Sbjct: 274 SQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVV 333

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  ++ ++   G +E  +  F  M   G+KPN ++Y +L+ AY+  G+      I + +
Sbjct: 334 TYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLL 393

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           + + +  D   +  +++AYG++G  EK  E F  M++  C P+ +++  +I AY + GM 
Sbjct: 394 KQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMF 453

Query: 328 EAAQNLENKM 337
           + A +L ++M
Sbjct: 454 KEAISLLHEM 463



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 162/371 (43%), Gaps = 37/371 (9%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q +QA  LF  M     KP  D+Y +L+ A+ ++G    A + ++DM   +   P   TY
Sbjct: 170 QIDQARGLFFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAA-IPPSRTTY 228

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM-- 126
           + +I +C     +    ++  +M+  G+    VT+N ++  +    ++ +  + F  M  
Sbjct: 229 NNVINACGAAGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKG 288

Query: 127 -----------------VESGG-----------------CHPDIFTLNSMISAYGNSGNI 152
                            V+ G                  C PD+ T  S++ +Y   G +
Sbjct: 289 ANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKV 348

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           E  +  ++     GVK +I + N L  +Y   GM+     +   +++    P VV+Y  +
Sbjct: 349 EDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTL 408

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           +  +G++G  EK  E FK+M+    +PN ++Y +L+ AY  AG+  +  S+L ++E   +
Sbjct: 409 LNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGI 468

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
             D    + +++A G+   + K+  +    K R    + + + + I +Y   G    A  
Sbjct: 469 PPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALE 528

Query: 333 LENKMIAMKEN 343
           L   M+A   N
Sbjct: 529 LYAVMMASNVN 539



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 139/295 (47%), Gaps = 2/295 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  QPE+A   F+ M  +  +P++  Y AL+ AYG +G+  EA S +++M+      PD
Sbjct: 413 GRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEK-DGIPPD 471

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V + S L+ +C +  +   I+ IL      GI+ + V YN+ I  Y     + +    ++
Sbjct: 472 VVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYA 531

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+ S   +PD  T N +IS     G   +  K++ +   + +    +  + L  SY + 
Sbjct: 532 VMMASN-VNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQ 590

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +  S    M++    P V+TY  +IE +   G      + FK+M+   ++P++I  
Sbjct: 591 GKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIIC 650

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
            SL+ A ++     +V  ++  ++   + L+   +  II++     D +   E+ 
Sbjct: 651 SSLMEALNRGSQHERVLQLMELMKEKCIPLNQKAYFEIIASCSMLRDWKTASEII 705



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 126/303 (41%), Gaps = 37/303 (12%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C+Q  +   + E   S G+K ++  Y + + +Y   G   +A      M + S+  PD
Sbjct: 483 GRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMA-SNVNPD 541

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ILI    K  ++    K   +M  L I  +   Y+++I  Y K  K  E ES+FS
Sbjct: 542 AVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFS 601

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           +M ESG C PD+ T  +MI AY + G+       + E     V+ D    + L ++  R 
Sbjct: 602 SMKESG-CLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRG 660

Query: 185 GMYDKMRSVMDFM--------QKRFF---------------------------FPTVVTY 209
             ++++  +M+ M        QK +F                             +V T 
Sbjct: 661 SQHERVLQLMELMKEKCIPLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLSSISVGTL 720

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N ++   GK G  E M + F KM          TY  L+      G   K   +L+ +E+
Sbjct: 721 NHLLTFLGKCGKTECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKWRKYIEVLQWMED 780

Query: 270 SDV 272
           + V
Sbjct: 781 AGV 783



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+ +  MI  +     I++    + E      K D    N L  ++ RAG +    ++M
Sbjct: 156 DIYGM--MIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIM 213

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M +    P+  TYN VI   G AG+ +K  E  KKM   G+ P+ +T+  ++SA+   
Sbjct: 214 DDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNG 273

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER--HCVPDNI 312
               K  +    ++ +++  DT   N +I    + G   +  EL  +M+E+   C PD +
Sbjct: 274 SQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVV 333

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           T+ +++ +Y   G  E  + + + M+A
Sbjct: 334 TYTSIMHSYYVCGKVEDCKAVFDMMVA 360



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 20/254 (7%)

Query: 1   MVMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  + A  L  FE M+   +  + +VY++L+ +Y + G L EA ST + MK  
Sbjct: 547 ILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKE- 605

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S C PDV TY+ +I++      +     +  EM    ++  A+  +++++   +  + E 
Sbjct: 606 SGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHER 665

Query: 119 MESSFSAMVESGGCHP-------DIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKAD 170
           +      M E   C P       +I    SM+  +  +  I E ++   +  +       
Sbjct: 666 VLQLMELMKEK--CIPLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLSSIS------- 716

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           + TLN L    G+ G  + M  +   M        V TY +++      G   K  E  +
Sbjct: 717 VGTLNHLLTFLGKCGKTECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKWRKYIEVLQ 776

Query: 231 KMKHRGMKPNSITY 244
            M+  G+ P    Y
Sbjct: 777 WMEDAGVSPTLYMY 790


>gi|168012907|ref|XP_001759143.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689842|gb|EDQ76212.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 156/341 (45%), Gaps = 13/341 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL----LDEAFSTINDMK 56
           +V+ GK +    A  LF  +   G +P   +Y AL++AY  S       + A      MK
Sbjct: 121 IVISGKARDLRMAVWLFNEVKRSGSRPDSSLYNALITAYLHSRDKGRGFEAAMKLFEKMK 180

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
               C+P++ TY+IL+++  +      +++   EM    I    VTYN +I  Y +A  +
Sbjct: 181 QKPKCQPNLVTYNILLRASAQLGDVVQVDRFFKEMEAAKIYPDLVTYNGVIGAYAEAGDY 240

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-----NLMGVKA-- 169
            +ME +   M       PD  T N++I AYG   +  KME+  + F     ++ G K+  
Sbjct: 241 VQMEMTLFVMRIQKHIKPDNVTSNTLIGAYGRGKDFVKMEQVVSLFTAVLKSMTGSKSKH 300

Query: 170 --DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
             D++T N+L  SY RA   + M      M++  F P   ++ I++  FG  G  EKM E
Sbjct: 301 RPDLKTYNLLMSSYARAQDMENMLWSFSRMEEASFKPNFRSFEILMYGFGGVGDFEKMRE 360

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
            F +M    +KP + T  +++SAY K     + + +L++     +   T  +  I+ AY 
Sbjct: 361 CFHQMLEASIKPQTSTLNTMISAYCKHNFFEEAEELLKEALEWQIHPRTSSYLIILRAYA 420

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
           +   +  M  L   M+     P + +F   ++ +     +E
Sbjct: 421 RDNRLNDMERLIERMRIADVAPVSASFLKSLEHFGLANWSE 461



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 117/271 (43%), Gaps = 20/271 (7%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY----GKAKKFEEMESSF 123
           Y+ LI    K     +   +  E+   G    +  YN +I  Y     K + FE     F
Sbjct: 117 YAKLIVISGKARDLRMAVWLFNEVKRSGSRPDSSLYNALITAYLHSRDKGRGFEAAMKLF 176

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M +   C P++ T N ++ A    G++ ++++++ E     +  D+ T N +  +Y  
Sbjct: 177 EKMKQKPKCQPNLVTYNILLRASAQLGDVVQVDRFFKEMEAAKIYPDLVTYNGVIGAYAE 236

Query: 184 AGMYDKMRSVMDFMQ-KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK------------ 230
           AG Y +M   +  M+ ++   P  VT N +I  +G+     KME+               
Sbjct: 237 AGDYVQMEMTLFVMRIQKHIKPDNVTSNTLIGAYGRGKDFVKMEQVVSLFTAVLKSMTGS 296

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           K KHR   P+  TY  L+S+Y++A  +  +     ++E +    +   F  ++  +G  G
Sbjct: 297 KSKHR---PDLKTYNLLMSSYARAQDMENMLWSFSRMEEASFKPNFRSFEILMYGFGGVG 353

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           D EKM E F  M E    P   T  TMI AY
Sbjct: 354 DFEKMRECFHQMLEASIKPQTSTLNTMISAY 384


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 152/314 (48%), Gaps = 8/314 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDE--AFSTINDMKSVSDCKPDVYTY 68
           + A  L + M    ++P +  +  L++A  +SG L    A   +++++     +PD  TY
Sbjct: 11  DDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAG-LRPDAITY 69

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSFSAM 126
           + LI +C++    D    +  EM  +  EC     TYN ++  +G+  K +E E  F  +
Sbjct: 70  NTLISACSQGSNLDDAVAVFEEM--IASECRPDLWTYNAMVSVHGRCGKAQEAELMFKEL 127

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           VE G   PD  T NS++ A+   G++E++E+   E    G + D  T N +   YG+ G 
Sbjct: 128 VEKG-FQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGR 186

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D    + D M+     P  VTY +++++ GK   I +  +  ++M   G+KP  +T+ +
Sbjct: 187 LDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSA 246

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+ AY+K+G     +    ++  S V  D   +  ++  + ++ +  K+  L+  M +  
Sbjct: 247 LICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDG 306

Query: 307 CVPDNITFATMIQA 320
             PD+  +  ++ A
Sbjct: 307 YKPDDGLYQVLLAA 320



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 140/285 (49%), Gaps = 4/285 (1%)

Query: 39  YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF--DLIEKILAEMSYLGI 96
           Y +SG  D+A   ++ M+   D +PD+ +++ LI +  K       +  ++L E+   G+
Sbjct: 4   YARSGRFDDARQLLDAMRD-QDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGL 62

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
              A+TYNT+I    +    ++  + F  M+ S  C PD++T N+M+S +G  G  ++ E
Sbjct: 63  RPDAITYNTLISACSQGSNLDDAVAVFEEMIASE-CRPDLWTYNAMVSVHGRCGKAQEAE 121

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
             + E    G + D  T N L  ++ + G  +++  V + + K  F    +TYN +I  +
Sbjct: 122 LMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMY 181

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
           GK G ++     + +M+  G  P+++TY  LV +  K   I +   +L ++ ++ +    
Sbjct: 182 GKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTL 241

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             F+ +I AY ++G  +     F  M E    PD + +  M+  +
Sbjct: 242 VTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 286



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 136/280 (48%), Gaps = 9/280 (3%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK- 73
           LL EV  + GL+P    Y  L+SA  Q   LD+A +   +M + S+C+PD++TY+ ++  
Sbjct: 53  LLHEVRQA-GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIA-SECRPDLWTYNAMVSV 110

Query: 74  --SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
              C K    +L+ K L E    G +  AVTYN+++  + K    E +E     +V++G 
Sbjct: 111 HGRCGKAQEAELMFKELVEK---GFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAG- 166

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              D  T N+MI  YG  G ++     Y+E   +G   D  T  +L  S G+     +  
Sbjct: 167 FRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAG 226

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V++ M      PT+VT++ +I  + K+G  +  E  F +M   G+KP+ + Y  ++  +
Sbjct: 227 KVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 286

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           +++    K+  + R +       D   +  +++A  +  +
Sbjct: 287 ARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNE 326



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 120/258 (46%), Gaps = 2/258 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  +FE M++   +P +  Y A+VS +G+ G   EA     ++      +PD  TY+ 
Sbjct: 83  DDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVE-KGFQPDAVTYNS 141

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  K    + +E++  E+   G     +TYNT+I  YGK  + +     +  M  + 
Sbjct: 142 LLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEM-RAI 200

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PD  T   ++ + G    I +  K   E    G+K  + T + L  +Y ++G  D  
Sbjct: 201 GCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDA 260

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
               D M +    P  + Y ++++ F ++    K+   ++ M   G KP+   Y  L++A
Sbjct: 261 ERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAA 320

Query: 251 YSKAGLIMKVDSILRQVE 268
            +K     +++ +++ +E
Sbjct: 321 LAKGNEHDEIEGVIQDME 338



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/200 (19%), Positives = 91/200 (45%), Gaps = 2/200 (1%)

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK--MRSVMDFMQKR 200
           +  Y  SG  +   +  +      ++ D+ + N L  +  ++G         ++  +++ 
Sbjct: 1   MGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALELLHEVRQA 60

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P  +TYN +I    +  +++     F++M     +P+  TY ++VS + + G   + 
Sbjct: 61  GLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEA 120

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           + + +++       D   +N ++ A+ + GDVE++  +   + +     D IT+ TMI  
Sbjct: 121 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHM 180

Query: 321 YNALGMTEAAQNLENKMIAM 340
           Y  +G  + A  L ++M A+
Sbjct: 181 YGKMGRLDLALGLYDEMRAI 200



 Score = 38.5 bits (88), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 74
           +L+  M+ DG KP   +Y  L++A  +    DE    I DM++V +  P V + SILIK+
Sbjct: 297 VLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVIS-SILIKA 355


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 156/325 (48%), Gaps = 2/325 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +  +A  L + M+  G +P++  Y  +V+   + G +D AF+ +N M++ +  + DV  +
Sbjct: 129 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEADVVIF 187

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I S  K+   D    +  EM   GI  + VTY+++I       ++ +     S M+E
Sbjct: 188 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 247

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
               +P++ T N++I A+   G   + EK +++     +  DI T N L   +      D
Sbjct: 248 KK-INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 306

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K + + +FM  +  FP + TYN +I+ F K+  +E   E F++M HRG+  +++TY +L+
Sbjct: 307 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 366

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                 G       + +Q+ +  V  D   ++ ++      G +EK  E+F  M++    
Sbjct: 367 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 426

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
            D   + TMI+     G  +   +L
Sbjct: 427 LDIYIYTTMIEGMCKAGKVDDGWDL 451



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 140/304 (46%), Gaps = 2/304 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            AS L   M+   + P++  + AL+ A+ + G   EA    +DM   S   PD++TY+ L
Sbjct: 237 DASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS-IDPDIFTYNSL 295

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D  +++   M          TYNT+I G+ K+K+ E+    F  M   G 
Sbjct: 296 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG- 354

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              D  T  ++I    + G+ +  +K + +    GV  DI T +IL       G  +K  
Sbjct: 355 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 414

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V D+MQK      +  Y  +IE   KAG ++   + F  +  +G+KPN +TY +++S  
Sbjct: 415 EVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 474

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
               L+ +  ++L++++    + D+  +N +I A+ + GD     EL   M+    V D 
Sbjct: 475 CSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 534

Query: 312 ITFA 315
            T  
Sbjct: 535 STIG 538



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 143/332 (43%), Gaps = 37/332 (11%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+   A  L + M+  G +P    +T L+          EA + ++ M     C+P++ T
Sbjct: 93  KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVT 151

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y +++    K    DL   +L +M    IE   V +NTIID   K +  ++  + F  M 
Sbjct: 152 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM- 210

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+ G  P++ T +S+IS   + G      +W +   L+                      
Sbjct: 211 ETKGIRPNVVTYSSLISCLCSYG------RWSDASQLLS--------------------- 243

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                  D ++K+   P +VT+N +I+ F K G   + E+    M  R + P+  TY SL
Sbjct: 244 -------DMIEKKIN-PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 295

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++ +     + K   +   + + D   D   +N +I  + ++  VE   ELF  M  R  
Sbjct: 296 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 355

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           V D +T+ T+IQ     G  + AQ +  +M++
Sbjct: 356 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 387



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 131/286 (45%), Gaps = 4/286 (1%)

Query: 38  AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI--EKILAEMSYLG 95
           ++G+   LD+A      M   S   P ++ ++ L+ +  K  +FDL+    +L +M  LG
Sbjct: 16  SWGKDLKLDDAIGLFGGMVK-SRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLG 74

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
            E S VT +++++GY   K+  +  +    MVE  G  PD  T  ++I          + 
Sbjct: 75  YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM-GYRPDTITFTTLIHGLFLHNKASEA 133

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
               +     G + ++ T  ++     + G  D   ++++ M+       VV +N +I++
Sbjct: 134 VALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDS 193

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K  H++     FK+M+ +G++PN +TY SL+S     G       +L  +    +  +
Sbjct: 194 LCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPN 253

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
              FN +I A+ + G   +  +L   M +R   PD  T+ ++I  +
Sbjct: 254 LVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGF 299



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 106/242 (43%), Gaps = 15/242 (6%)

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL----- 164
           +GK  K ++    F  MV+S    P IF  N ++SA      I KM+K+    +L     
Sbjct: 17  WGKDLKLDDAIGLFGGMVKSRPL-PSIFEFNKLLSA------IAKMKKFDLVISLALLGK 69

Query: 165 ---MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              +G +  I TL+ L   Y          +++D M +  + P  +T+  +I        
Sbjct: 70  MMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNK 129

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
             +      +M  RG +PN +TY  +V+   K G I    ++L ++E + +  D   FN 
Sbjct: 130 ASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNT 189

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           II +  +   V+    LF  M+ +   P+ +T++++I    + G    A  L + MI  K
Sbjct: 190 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 249

Query: 342 EN 343
            N
Sbjct: 250 IN 251


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 157/317 (49%), Gaps = 5/317 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  + EQ   + E+++  GL P+  +Y  L++ Y Q   L  AF     MKS    +PD
Sbjct: 348 GKVAKAEQ---VLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKS-RHIRPD 403

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ LI    K       E ++ EM   G++ S  T+NT+ID YG A + E+  +  S
Sbjct: 404 HITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLS 463

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +  G   D+ +  S++ A+  +G I +     ++     V  + Q  N +  +Y  +
Sbjct: 464 DM-QQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIES 522

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  ++   +++ M+      ++VTYN++++   ++  I++ EE    ++++G++P+ ++Y
Sbjct: 523 GDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSY 582

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +++SA    G   K   +L+++    +      ++ ++SA   AG V  M  L+  M  
Sbjct: 583 NTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLH 642

Query: 305 RHCVPDNITFATMIQAY 321
           ++  P +  +  M+ AY
Sbjct: 643 KNVEPSSSIYGIMVDAY 659



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 37/357 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + ML DG KP++  Y  L+S   ++G +DE    +++M S S   PD +TYSIL    
Sbjct: 251 LRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHS-MFPDGFTYSILFDGL 309

Query: 76  T-----------------------------------KFHRFDLIEKILAEMSYLGIECSA 100
           T                                   K  +    E++L  + + G+  + 
Sbjct: 310 TRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTT 369

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           V YNT+I+GY + +        F  M +S    PD  T N++I+       + K E    
Sbjct: 370 VIYNTLINGYCQVRDLRGAFCIFEQM-KSRHIRPDHITYNALINGLCKLEMVTKAEDLVM 428

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E    GV   ++T N L  +YG AG  +K  +V+  MQ++     V+++  V++ F K G
Sbjct: 429 EMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNG 488

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            I +       M ++ + PN+  Y S++ AY ++G   +   ++ +++NS V      +N
Sbjct: 489 KIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYN 548

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            ++    ++  +++  EL  T++ +   PD +++ T+I A    G T+ A  L  +M
Sbjct: 549 LLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEM 605



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 131/278 (47%), Gaps = 3/278 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEM--SYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +PD + ++ ++++C      D+   ++  M  S       A +YN +I G  ++ K  + 
Sbjct: 154 RPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDA 213

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  MV+ G   P+  T N+MI  +   G++E   +  ++    G K +I T N+L  
Sbjct: 214 LKVFDEMVDMG-VVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLS 272

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              RAG  D+ R +MD M     FP   TY+I+ +   + G    M   F +   +G+  
Sbjct: 273 GLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVML 332

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
            + T   L++   K G + K + +L  + ++ ++  T  +N +I+ Y Q  D+     +F
Sbjct: 333 GAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIF 392

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             MK RH  PD+IT+  +I     L M   A++L  +M
Sbjct: 393 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM 430



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 124/256 (48%), Gaps = 2/256 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G+ PSV+ +  L+ AYG +G L++ F+ ++DM+     K DV ++  ++K+  K  
Sbjct: 430 MEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQ-KGIKSDVISFGSVVKAFCKNG 488

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +      IL +M Y  +  +A  YN+IID Y ++   E+       M  SG     I T 
Sbjct: 489 KIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSG-VSASIVTY 547

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N ++     S  I++ E+        G++ D+ + N +  +    G  DK   ++  M K
Sbjct: 548 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 607

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               PT+ TY+ ++     AG +  ME  +++M H+ ++P+S  Y  +V AY +     K
Sbjct: 608 YGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSK 667

Query: 260 VDSILRQVENSDVILD 275
           V S+ +++    +  D
Sbjct: 668 VASLKKEMSEKGIAFD 683



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 66/138 (47%), Gaps = 2/138 (1%)

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P++ + N+++E+    G    +   F  +   G +P++  +  +V A   AG +    +
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 263 ILRQVENSD--VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           ++R++  S+     D   +N +I+   ++G      ++F  M +   VP+ IT+ TMI  
Sbjct: 179 MVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDG 238

Query: 321 YNALGMTEAAQNLENKMI 338
           +   G  EA   L ++M+
Sbjct: 239 HVKGGDLEAGFRLRDQML 256


>gi|242078641|ref|XP_002444089.1| hypothetical protein SORBIDRAFT_07g007540 [Sorghum bicolor]
 gi|241940439|gb|EES13584.1| hypothetical protein SORBIDRAFT_07g007540 [Sorghum bicolor]
          Length = 942

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 154/305 (50%), Gaps = 15/305 (4%)

Query: 25  LKPSVDV-----YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           LK S  V     Y+ +V  Y ++  L++A S + +M+   +  PD Y +  ++++   + 
Sbjct: 615 LKASASVLDMIAYSVIVRMYIKAQRLEDACSILAEMEKQKEIIPDKYLFLDMLRT---YQ 671

Query: 80  RFDLIEKILAEMSYL----GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           +  L+EK LA+  Y      +EC    YN II+  G+A   +E+   F  M++ G    +
Sbjct: 672 KCGLLEK-LADTYYWIRKSQVECDEAMYNCIINCCGRAIPVDELSRIFDEMIQQGHL-AN 729

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             TLN ++  YG +G   + EK +      G+ ADI + N +  +Y ++G +  M   + 
Sbjct: 730 TVTLNVLLDIYGKAGLFNRAEKVFIMARKQGL-ADIISYNTIIAAYAKSGNFHSMNYFVQ 788

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            MQ   F  +   YN +++ +GKAG +E+     +KMK    K +  TY  +++ Y + G
Sbjct: 789 MMQDAGFPVSPEAYNCMLDAYGKAGQLEEFASVLQKMKRAKCKFDHYTYNIMINIYGRRG 848

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I  V ++L ++++  V+ D   +N +I AYG A   E   +L   M+ +   PD +T+A
Sbjct: 849 WIEDVSNVLAELKDRGVVPDLYSYNTLIKAYGIARMPEDAVKLMQEMRIKGISPDRVTYA 908

Query: 316 TMIQA 320
            +I A
Sbjct: 909 NLIAA 913



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 126/284 (44%), Gaps = 39/284 (13%)

Query: 6   KCKQPEQA-SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           K ++ E A S+L E+     + P   ++  ++  Y + GLL++   T   ++  S  + D
Sbjct: 636 KAQRLEDACSILAEMEKQKEIIPDKYLFLDMLRTYQKCGLLEKLADTYYWIRK-SQVECD 694

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF- 123
              Y+ +I  C +    D + +I  EM   G   + VT N ++D YGKA  F   E  F 
Sbjct: 695 EAMYNCIINCCGRAIPVDELSRIFDEMIQQGHLANTVTLNVLLDIYGKAGLFNRAEKVFI 754

Query: 124 -----------------SAMVESGGCH-----------------PDIFTLNSMISAYGNS 149
                            +A  +SG  H                 P+ +  N M+ AYG +
Sbjct: 755 MARKQGLADIISYNTIIAAYAKSGNFHSMNYFVQMMQDAGFPVSPEAY--NCMLDAYGKA 812

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G +E+      +      K D  T NI+   YGR G  + + +V+  ++ R   P + +Y
Sbjct: 813 GQLEEFASVLQKMKRAKCKFDHYTYNIMINIYGRRGWIEDVSNVLAELKDRGVVPDLYSY 872

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           N +I+ +G A   E   +  ++M+ +G+ P+ +TY +L++A  +
Sbjct: 873 NTLIKAYGIARMPEDAVKLMQEMRIKGISPDRVTYANLIAALQR 916



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/398 (20%), Positives = 160/398 (40%), Gaps = 73/398 (18%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV+  K  +  +A   F+ M +  +K  V+ Y+A+++ Y + GL  ++  TIN M +   
Sbjct: 283 MVLYQKTGKLSEAEFTFQKMRNCNIK-CVNAYSAMITLYTRLGLFAKSEDTINLMNN-DG 340

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P++  + + +    +  + +  E +L  M   G   + V YNT+I GYGK+   ++  
Sbjct: 341 LVPNMENWLVRLNVYCQQGKMEEAELVLQSMVDEGFTLNIVAYNTLITGYGKSSDVQKAN 400

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF----------------NL 164
             F ++  S G  PD  T  SM+  +G +   E+   +Y +                 NL
Sbjct: 401 RVFDSL-GSAGLAPDETTYRSMVEGFGRANIYEEAILYYRKLKGAGFRPNASNFYTMINL 459

Query: 165 MGVKADIQT------------------LNILTKSYGRAGMYDKMRSVMD--FMQKRFFFP 204
           +  + D +T                  + +L ++YG  G   K+  ++   F +K  F  
Sbjct: 460 LARRDDNETAAEIMEDMRAAGCQCSSIVTVLVRAYGAVGRMHKVLPILQACFNKKILFDA 519

Query: 205 T----VVT-----------------------------YNIVIETFGKAGHIEKMEEYFKK 231
           T    +VT                             Y+++I +  + G        + +
Sbjct: 520 TSCSILVTSFVQKSLLEEALYILREKKWKDSAFEDNLYHMLICSCKEGGSYNDAVRIYNQ 579

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M      PN    C+++  +S        ++I  +++ S  +LD   ++ I+  Y +A  
Sbjct: 580 MPKSETHPNPRISCTMIDVFSMMKRFADAEAIYLELKASASVLDMIAYSVIVRMYIKAQR 639

Query: 292 VEKMGELFLTM-KERHCVPDNITFATMIQAYNALGMTE 328
           +E    +   M K++  +PD   F  M++ Y   G+ E
Sbjct: 640 LEDACSILAEMEKQKEIIPDKYLFLDMLRTYQKCGLLE 677



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 131/317 (41%), Gaps = 6/317 (1%)

Query: 11  EQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           E+A   F+ M  +G LK +   Y   + A         A   + +M + S C  D   ++
Sbjct: 186 EKALNFFDWMKVNGKLKGNPHAYHLALQAIAWKEDWKMAELLLCEMVADSGCTLDARAFN 245

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            LI  C K        K    M    ++ +  T+  ++  Y K  K  E E +F  M   
Sbjct: 246 GLIYVCAKRRLDAWATKWFHMMLEREVQPNLSTFGMLMVLYQKTGKLSEAEFTFQKMRN- 304

Query: 130 GGCHPD-IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             C+   +   ++MI+ Y   G   K E   N  N  G+  +++   +    Y + G  +
Sbjct: 305 --CNIKCVNAYSAMITLYTRLGLFAKSEDTINLMNNDGLVPNMENWLVRLNVYCQQGKME 362

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   V+  M    F   +V YN +I  +GK+  ++K    F  +   G+ P+  TY S+V
Sbjct: 363 EAELVLQSMVDEGFTLNIVAYNTLITGYGKSSDVQKANRVFDSLGSAGLAPDETTYRSMV 422

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             + +A +  +     R+++ +    +   F  +I+   +  D E   E+   M+   C 
Sbjct: 423 EGFGRANIYEEAILYYRKLKGAGFRPNASNFYTMINLLARRDDNETAAEIMEDMRAAGCQ 482

Query: 309 PDNITFATMIQAYNALG 325
             +I    +++AY A+G
Sbjct: 483 CSSIV-TVLVRAYGAVG 498



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 1/229 (0%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
            Y+  +      + ++  E     MV   GC  D    N +I             KW++ 
Sbjct: 207 AYHLALQAIAWKEDWKMAELLLCEMVADSGCTLDARAFNGLIYVCAKRRLDAWATKWFHM 266

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
                V+ ++ T  +L   Y + G   +       M +      V  Y+ +I  + + G 
Sbjct: 267 MLEREVQPNLSTFGMLMVLYQKTGKLSEAEFTFQKM-RNCNIKCVNAYSAMITLYTRLGL 325

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
             K E+    M + G+ PN   +   ++ Y + G + + + +L+ + +    L+   +N 
Sbjct: 326 FAKSEDTINLMNNDGLVPNMENWLVRLNVYCQQGKMEEAELVLQSMVDEGFTLNIVAYNT 385

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I+ YG++ DV+K   +F ++      PD  T+ +M++ +    + E A
Sbjct: 386 LITGYGKSSDVQKANRVFDSLGSAGLAPDETTYRSMVEGFGRANIYEEA 434


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 157/323 (48%), Gaps = 2/323 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M + G+   V  YT L+  +  +  L EA   +N+M  +    P+VYTY+IL+ + 
Sbjct: 221 LFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEM-VLKTINPNVYTYNILVDAL 279

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +    + +LA M    ++   +TY+T++DGY    + ++ +  F+AM    G  PD
Sbjct: 280 CKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAM-SLMGVTPD 338

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + +   +I+ +  +  +++    + E +   +   I T + L     ++G    +  ++D
Sbjct: 339 VHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLID 398

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ R     V+TYN +I+   K GH+++    F KMK +G++P S T+  L+    K G
Sbjct: 399 EMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGG 458

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +       + +      LD   +N +I+ + + G +E+   +   M+E  CVP+ +TF 
Sbjct: 459 RLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFD 518

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
            +I A       + A+ L  +MI
Sbjct: 519 IIINALFKKDENDKAEKLLRQMI 541



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 110/227 (48%), Gaps = 2/227 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F  M   G+ P V  YT L++ + ++ ++DEA +   +M    +  P + TYS 
Sbjct: 321 KKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQ-KNMVPGIVTYSS 379

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  R   +  ++ EM   GI  + +TYN++IDG  K    +   + F+ M + G
Sbjct: 380 LIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQG 439

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P  FT   ++      G ++  ++ + +    G   D+   N++   + + G+ ++ 
Sbjct: 440 -IRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEA 498

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            +++  M++    P  VT++I+I    K    +K E+  ++M  RG+
Sbjct: 499 LTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGL 545



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 141/330 (42%), Gaps = 34/330 (10%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTK----- 77
           G++P +     L++ +   G +   FS +  +      +P   T++ LIK  C K     
Sbjct: 89  GIQPDLITLNILINCFCHMGQITFGFSVLAKILK-RGYQPHTITFTTLIKGLCLKGQVNK 147

Query: 78  ---FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-------GKAKKFEEMESSFSAMV 127
              FH     +K+LA+    GI+   V+Y T+I+G        G  K   +++   +   
Sbjct: 148 ALHFH-----DKLLAQ----GIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTK-- 196

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
                 P++   N++I A      + +    ++E    G+ AD+ T   L   +  A   
Sbjct: 197 ------PNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKL 250

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            +   +++ M  +   P V TYNI+++   K G +++ +     M    +KP+ ITY +L
Sbjct: 251 KEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTL 310

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  Y     + K   +   +    V  D   +  +I+ + +   V++   LF  M +++ 
Sbjct: 311 MDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNM 370

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKM 337
           VP  +T++++I      G      +L ++M
Sbjct: 371 VPGIVTYSSLIDGLCKSGRISYVWDLIDEM 400



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/299 (19%), Positives = 127/299 (42%), Gaps = 8/299 (2%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           +D+A S  N M  +    P +  ++ ++ S  K   +     +   +   GI+   +T N
Sbjct: 40  VDDAVSQFNRMLCMRH-TPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I+ +    +     S  + +++ G   P   T  ++I      G + K   ++++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGY-QPHTITFTTLIKGLCLKGQVNKALHFHDKLLA 157

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNIVIETFGKAGH 221
            G+K D  +   L     + G     R  +  ++K   R   P V  YN +I+   K   
Sbjct: 158 QGIKFDQVSYGTLINGVCKIG---DTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQL 214

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           + +    F +M  +G+  + +TY +L+  +  A  + +   +L ++    +  +   +N 
Sbjct: 215 VSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           ++ A  + G V++   +   M +    PD IT++T++  Y  +   + AQ++ N M  M
Sbjct: 275 LVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLM 333



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 75/189 (39%)

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           N++     +N    M     I   N +  S+ +   Y    S+   ++ +   P ++T N
Sbjct: 39  NVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           I+I  F   G I        K+  RG +P++IT+ +L+      G + K      ++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQ 158

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +  D   +  +I+   + GD     +L   +  R   P+   + T+I A     +   A
Sbjct: 159 GIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEA 218

Query: 331 QNLENKMIA 339
             L ++M A
Sbjct: 219 YGLFSEMTA 227


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 159/391 (40%), Gaps = 70/391 (17%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L E M++ G  P++  ++ L+    ++GL +        M     C PDV  Y+ +I   
Sbjct: 239 LMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAE-HGCAPDVRMYATIIDGV 297

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----- 130
            K  R ++   IL  M   G+  + V YNT++ G   A ++EE E   + M +       
Sbjct: 298 CKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDD 357

Query: 131 -----------------------------GCHPDIFTLNSMISAYGNSGNIEKM------ 155
                                        GC PD+ T  ++I+ +   G I++       
Sbjct: 358 VTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRS 417

Query: 156 -----------------------EKWYNEFNLM------GVKADIQTLNILTKSYGRAGM 186
                                  E+W +   LM      G   +  T N L     + G+
Sbjct: 418 MAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 477

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            ++   ++  M      P +++Y+ VI+  GKAG+ ++  E    M  +GM PN+I Y S
Sbjct: 478 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSS 537

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           + SA S  G I KV  +   ++++ V  D   +N +IS+  + G+ ++  E    M    
Sbjct: 538 IASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSG 597

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           CVP+  T+  +I+   + G  + AQ +  ++
Sbjct: 598 CVPNESTYTILIRGLASEGFVKEAQEILTEL 628



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 153/341 (44%), Gaps = 5/341 (1%)

Query: 1   MVMLGKCKQ---PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           +V+   C Q    E   LL +++ S G +P V  Y A++     +         + +M +
Sbjct: 186 LVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVA 245

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            + C P++ T+S LI    +   F+ + ++ A+M+  G       Y TIIDG  K ++ E
Sbjct: 246 -AGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLE 304

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
                 + M  S G  P++   N+++    ++   E+ E    E        D  T NIL
Sbjct: 305 VARGILNRM-PSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNIL 363

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                + G+ D++  V++ M +    P V+TY  VI  F K G I++     + M   G 
Sbjct: 364 VDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGC 423

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +PN+++Y  ++     A   +  + ++ Q+       +   FN +I+   + G VE+  E
Sbjct: 424 RPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 483

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           L   M    C PD I+++T+I      G T+ A  L N M+
Sbjct: 484 LLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMV 524



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 131/315 (41%), Gaps = 1/315 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           + P+   Y  LV A    G + +A + ++DM     C P    Y + +++  +   F   
Sbjct: 107 VAPNAYTYFPLVRALCARGRIADALAVLDDMAR-RGCAPTPPMYHVTLEAACRASGFRGA 165

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
             +L ++   G        N ++         +E       ++ S GC PD+ + N+++ 
Sbjct: 166 VGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLR 225

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               +     ++    E    G   +I T + L     R G+++++  V   M +    P
Sbjct: 226 GLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAP 285

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            V  Y  +I+   K   +E       +M   G+ PN + Y +L+     A    + + +L
Sbjct: 286 DVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLL 345

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++ + D  LD   FN ++    Q G V+++ E+   M E  C+PD IT+ T+I  +   
Sbjct: 346 AEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKE 405

Query: 325 GMTEAAQNLENKMIA 339
           G+ + A  L   M A
Sbjct: 406 GLIDEAVMLLRSMAA 420



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK    ++A  L  VM+  G+ P+  +Y+++ SA    G +++      +++  +  + 
Sbjct: 507 LGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTT-VRS 565

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   Y+ +I S  K    D   + LA M   G   +  TY  +I G       +E +   
Sbjct: 566 DAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEIL 625

Query: 124 SAMVESG 130
           + +   G
Sbjct: 626 TELCSKG 632


>gi|410110079|gb|AFV61119.1| pentatricopeptide repeat-containing protein 123, partial [Junellia
           succulentifolia]
          Length = 382

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 23  KAISIFSRLKR-SGFMPDLVAYNAMINVFGKAKLFRDARSLISEMRTAGVTPNTASYSTL 81

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E  S F+ M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 82  LTMYVENKKFLEALSVFAEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 140

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 141 IEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 200

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M++RG++PNSITY +++S + K G + +   + +++ +S V +D   +  +I AY
Sbjct: 201 NLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAY 260

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG V     L   +K     PDNI     I      G  E A
Sbjct: 261 ERAGLVAHAKRLLHELKR----PDNIPRDIAIHILAGAGRIEEA 300



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 134/274 (48%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  YS LI+   K   +     I + +   G     V YN +I+ +GKAK F +  S  
Sbjct: 4   DLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLI 63

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M  + G  P+  + +++++ Y  +    +    + E   +    D+ T NI+   YG+
Sbjct: 64  SEM-RTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQ 122

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM  +   +   M+K    P VV+YN ++  +G A    +    F+ M+ + ++ N +T
Sbjct: 123 LGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHLFRLMQRKNIEQNVVT 182

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  Y K     K ++++++++N  +  ++  ++ IIS +G+ G +++   LF  ++
Sbjct: 183 YNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                 D + + TMI AY   G+   A+ L +++
Sbjct: 243 SSGVDIDQVLYQTMIVAYERAGLVAHAKRLLHEL 276



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 151/337 (44%), Gaps = 10/337 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K    A  L   M + G+ P+   Y+ L++ Y ++    EA S   +M+ +  C 
Sbjct: 49  VFGKAKLFRDARSLISEMRTAGVTPNTASYSTLLTMYVENKKFLEALSVFAEMREIK-CL 107

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D+ T +I+I    +       +K+   M  +GIE + V+YNT++  YG A+ F E    
Sbjct: 108 LDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLLRVYGDAELFGEAIHL 167

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +      ++ T NSM+  YG +   EK      E    G++ +  T + +   +G
Sbjct: 168 FRLM-QRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIEPNSITYSTIISIWG 226

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + G  D  R+ M F + R     +  V Y  +I  + +AG +     + K++ H   +P+
Sbjct: 227 KVGKLD--RAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVA----HAKRLLHELKRPD 280

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +I     +   + AG I +   + RQ  ++  + D   F  +I  + +      + E+F 
Sbjct: 281 NIPRDIAIHILAGAGRIEEATWVFRQAIDAGXVKDITVFERMIHLFSKYKKYGNVVEVFD 340

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 341 KMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEM 377



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/361 (19%), Positives = 152/361 (42%), Gaps = 74/361 (20%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  +A S I++M++ +   P+  +YS L+   
Sbjct: 27  IFSRLKRSGFMPDLVAYNAMINVFGKAKLFRDARSLISEMRT-AGVTPNTASYSTLLTMY 85

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + AEM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 86  VENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 144

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 145 VVSYNTLLRVYGDA---ELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 201

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G+  + + Y +++ AY 
Sbjct: 202 LIQEMQNRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYE 261

Query: 253 K-------------------------------AGLIMKVDSILRQVENSDVILDTPFFN- 280
           +                               AG I +   + RQ  ++  + D   F  
Sbjct: 262 RAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGXVKDITVFER 321

Query: 281 ----------------------------------CIISAYGQAGDVEKMGELFLTMKERH 306
                                              +++AYG+  + +K  ++++ M+E  
Sbjct: 322 MIHLFSKYKKYGNVVEVFDKMRGLGYFPDSNVIALVLNAYGKLHEFDKANDVYMEMQEVG 381

Query: 307 C 307
           C
Sbjct: 382 C 382


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 2/320 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E  + L++ M+ +G +P V  +  L+    + GL+  A   +NDM S + C P++ TY+ 
Sbjct: 362 EANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDM-SANGCTPNLITYTT 420

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K ++ +    +L EMS  G E + + YN ++    K  K  +       M + G
Sbjct: 421 LLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKG 480

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C PDIFT N++I         E     Y +  L GV A+  T N L  ++ R G   + 
Sbjct: 481 -CKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEA 539

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M  R      +TYN +I+ F K G  EK    F +M  + + P++I+   L++ 
Sbjct: 540 LKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLING 599

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G +     +LR + +  +  D   +N +I+   + G++ +   LF  ++     PD
Sbjct: 600 LCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPD 659

Query: 311 NITFATMIQAYNALGMTEAA 330
            IT+ T+I  +   GM + A
Sbjct: 660 AITYNTLICWHCRAGMFDDA 679



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 145/322 (45%), Gaps = 1/322 (0%)

Query: 18  EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 77
           +V+L+    P+   +T L++ Y +SG LDEA + + D    + C+PDV+T++ LI    K
Sbjct: 333 QVLLNKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCK 392

Query: 78  FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
                    ++ +MS  G   + +TY T++DG+ K  + EE     + M  + G   +I 
Sbjct: 393 KGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEM-SAKGFELNIM 451

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
             N ++ A   +G + K      E +  G K DI T N L     +    +   ++   M
Sbjct: 452 GYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDM 511

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
                    VTYN +I  F + G I++  +    M  RG   + ITY  L+ A+ K G  
Sbjct: 512 LLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGAT 571

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            K   +  ++   D++      N +I+   + G V    EL   M  R   PD +T+ ++
Sbjct: 572 EKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSL 631

Query: 318 IQAYNALGMTEAAQNLENKMIA 339
           I     +G    A NL NK+ A
Sbjct: 632 INGLCKMGNIREAFNLFNKLQA 653



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 157/359 (43%), Gaps = 32/359 (8%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  L   M   G  P+  VY  L+ A  +   ++EA   + +M  +  C PDV T++ 
Sbjct: 225 DNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEM-FLMGCLPDVDTFND 283

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM---- 126
           +I    + +R     K++  M + G   + +TY  +++G  +  K +E +   + +    
Sbjct: 284 VIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPN 343

Query: 127 -----------VESG----------------GCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
                      V+SG                GC PD+FT N++I      G +       
Sbjct: 344 DVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMV 403

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           N+ +  G   ++ T   L   + +    ++   V++ M  + F   ++ YN+++    K 
Sbjct: 404 NDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKN 463

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G + K  +   +M  +G KP+  T+ +L+    K        ++ R +    VI +T  +
Sbjct: 464 GKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTY 523

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           N +I A+ + G +++  +L   M  R C  D IT+  +I+A+  LG TE A  L ++M+
Sbjct: 524 NTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMV 582



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 146/340 (42%), Gaps = 9/340 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C+  +  + + L + ML  G  P+   Y  L++   + G +DEA   +N + +  
Sbjct: 284 VIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPT-- 341

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAE-MSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              P+   ++ILI    K  R D     L + M   G      T+NT+I G  K      
Sbjct: 342 ---PNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGS 398

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                + M  + GC P++ T  +++  +     +E+     NE +  G + +I   N+L 
Sbjct: 399 AVDMVNDM-SANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLL 457

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           ++  + G   K   ++  M  +   P + T+N +I    K    E     ++ M   G+ 
Sbjct: 458 RALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVI 517

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            N++TY +L+ A+ + G I +   ++  +      LD   +N +I A+ + G  EK   L
Sbjct: 518 ANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGL 577

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  M  +  VP NI+   +I     +G    A  L   MI
Sbjct: 578 FDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMI 617



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 143/338 (42%), Gaps = 8/338 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG  K+ +    L   +  +G+     ++  ++  YG++ L  +A   + DMK V  C+P
Sbjct: 112 LGAAKEFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDMKGVYCCEP 171

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
              +Y++++      +   +   +  EM   G+  +  T+  ++       + +   S  
Sbjct: 172 TFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLL 231

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M +  GC P+     ++I A      + +  K   E  LMG   D+ T N +     R
Sbjct: 232 RDMTKH-GCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCR 290

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
                +   ++D M  R F P  +TY +++    + G +++ +    K+      PN + 
Sbjct: 291 LNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP----TPNDVH 346

Query: 244 YCSLVSAYSKAGLIMKVDSIL--RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +  L++ Y K+G + + ++ L  + ++N     D   FN +I    + G +    ++   
Sbjct: 347 FTILINGYVKSGRLDEANAFLYDKMIKNG-CRPDVFTFNTLIHGLCKKGLMGSAVDMVND 405

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M    C P+ IT+ T++  +      E A  + N+M A
Sbjct: 406 MSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSA 443



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 114/309 (36%), Gaps = 40/309 (12%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y +LI        F +I+K+L ++   GI      +  I+  YG+A    +       M
Sbjct: 104 VYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDM 163

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
                C P   + N ++    ++         + E    GV   + T  ++ K+      
Sbjct: 164 KGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNE 223

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK----MEEYF------------- 229
            D   S++  M K    P  V Y  +I    K   + +    +EE F             
Sbjct: 224 VDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFND 283

Query: 230 ------------------KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
                              +M  RG  PN ITY  L++   + G + +   +L +V   +
Sbjct: 284 VIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPN 343

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGE-LFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +     F  +I+ Y ++G +++    L+  M +  C PD  TF T+I      G+  +A
Sbjct: 344 DV----HFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSA 399

Query: 331 QNLENKMIA 339
            ++ N M A
Sbjct: 400 VDMVNDMSA 408


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 157/334 (47%), Gaps = 2/334 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K   +A  LF  M+S G+ P V  Y+AL+S +   G L +A    N M  + + KPDV
Sbjct: 237 KVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKM-ILENIKPDV 295

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YT++IL+ +  K  +    + +   M   GI+ + VTYN+++DGY   K+  + +S F+ 
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNT 355

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M + GG +PDI + + MI+ +      ++    + E +   +  D+ T + L     ++G
Sbjct: 356 MAQ-GGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSG 414

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
                  ++D M  R   P + TYN +++   K   ++K      K K +G +P+  TY 
Sbjct: 415 RISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYS 474

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+    ++G +     +   +      LD   +  +I  +   G   +   L   M++ 
Sbjct: 475 ILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDN 534

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            C+PD  T+  +I +       + A+ L  +MIA
Sbjct: 535 GCIPDAKTYEIIILSLFKKDENDMAEKLLREMIA 568



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 161/339 (47%), Gaps = 12/339 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E  + L  +   DG  ++P+V +Y  ++ +  +  L++EAF   ++M S     
Sbjct: 199 GLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVS-KGIS 257

Query: 63  PDVYTYSILIKSCTKFHRF----DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           PDV TYS LI       +     DL  K++ E     I+    T+N +++ + K  K +E
Sbjct: 258 PDVVTYSALISGFCILGKLKDAIDLFNKMILE----NIKPDVYTFNILVNAFCKDGKMKE 313

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            ++ F  M++ G   P+  T NS++  Y     + K +  +N     GV  DIQ+ +I+ 
Sbjct: 314 GKTVFDMMMKQG-IKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMI 372

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + +   +D+  ++   M ++   P VVTY+ +I+   K+G I    +   +M  RG+ 
Sbjct: 373 NGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVP 432

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN  TY S++ A  K   + K  ++L + ++     D   ++ +I    Q+G +E   ++
Sbjct: 433 PNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKV 492

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           F  +  +    D   +  MIQ +   G+   A  L +KM
Sbjct: 493 FEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKM 531



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 152/327 (46%), Gaps = 6/327 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--CKPDVY 66
           Q +QA L  + +++ G       Y  L+    + G   E  + ++ ++ V     +P+V 
Sbjct: 170 QIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG---ETRAALDLLQRVDGNLVQPNVV 226

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y+ +I S  K    +    + +EM   GI    VTY+ +I G+    K ++    F+ M
Sbjct: 227 MYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKM 286

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           +      PD++T N +++A+   G +++ +  ++     G+K +  T N L   Y     
Sbjct: 287 ILEN-IKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKE 345

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            +K +S+ + M +    P + +Y+I+I  F K    ++    FK+M  + + P+ +TY S
Sbjct: 346 VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+   SK+G I     ++ Q+ +  V  +   +N I+ A  +   V+K   L    K++ 
Sbjct: 406 LIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKG 465

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNL 333
             PD  T++ +I+     G  E A+ +
Sbjct: 466 FQPDISTYSILIKGLCQSGKLEDARKV 492



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 113/241 (46%), Gaps = 4/241 (1%)

Query: 2   VMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C  K+  +A  +F  M   G+ P +  Y+ +++ + +    DEA +   +M    
Sbjct: 336 LMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHR-K 394

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +  PDV TYS LI   +K  R     +++ +M   G+  +  TYN+I+D   K  + ++ 
Sbjct: 395 NIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKA 454

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            +  +   +  G  PDI T + +I     SG +E   K + +  + G   D+    I+ +
Sbjct: 455 IALLTKF-KDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQ 513

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +   G++++  +++  M+     P   TY I+I +  K    +  E+  ++M  RG+  
Sbjct: 514 GFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPL 573

Query: 240 N 240
           N
Sbjct: 574 N 574



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/263 (20%), Positives = 113/263 (42%), Gaps = 2/263 (0%)

Query: 77  KFHRFDLIEKI-LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           KF  F  ++      + Y   + + ++Y++    +      ++  S F+ ++      P 
Sbjct: 26  KFQSFQFLKNTHFNFIPYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTT-PP 84

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            F  N ++ +   S +   +     +    G+K ++   NIL   + + G+     SV  
Sbjct: 85  AFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFA 144

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            + K  + P  +T+  + +     G I++   +  K+   G   + I+Y +L+    K G
Sbjct: 145 KILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVG 204

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
                  +L++V+ + V  +   +N II +  +   V +  +LF  M  +   PD +T++
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYS 264

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
            +I  +  LG  + A +L NKMI
Sbjct: 265 ALISGFCILGKLKDAIDLFNKMI 287



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 91/222 (40%), Gaps = 1/222 (0%)

Query: 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
           A  +N I+    K+K +  +    S  +E  G  P++   N +I+ +   G I      +
Sbjct: 85  AFEFNKILGSLVKSKHYHTV-LYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVF 143

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
            +   MG   D  T   L+K     G   +     D +    F    ++Y  +I    K 
Sbjct: 144 AKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKV 203

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G      +  +++    ++PN + Y +++ +  K  L+ +   +  ++ +  +  D   +
Sbjct: 204 GETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTY 263

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           + +IS +   G ++   +LF  M   +  PD  TF  ++ A+
Sbjct: 264 SALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAF 305


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 145/334 (43%), Gaps = 37/334 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K KQ + A  L   M  DG++P    Y +L+S    SG  D+A   ++ M    +  P
Sbjct: 196 LCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTK-REIYP 254

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV+T++ LI +C K  R    E++  EM    ++   VTY+ +I G     + +E E  F
Sbjct: 255 DVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMF 314

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV S GC PD+ T + +I+ Y  S  +E   K + E                      
Sbjct: 315 GFMV-SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCE---------------------- 351

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
                        M +R      VTY ++I+ + +AG +   EE FK M   G+ PN IT
Sbjct: 352 -------------MSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIIT 398

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+      G I K   IL  ++ S +  D   +N II    +AG+V    +L+ ++ 
Sbjct: 399 YNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLN 458

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +   PD  T+  M+      G+   A  L  KM
Sbjct: 459 LKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKM 492



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 141/312 (45%), Gaps = 2/312 (0%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           PS+  ++ L+SA  +    D        M+ +     ++ T +IL+    +  +  L   
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLG-IPHNLCTCNILLNCFCRCSQLSLALS 137

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
            L +M  LG E   VT+ ++++G+ +  +  +    F  MVE G   P++   N++I   
Sbjct: 138 FLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGY-EPNVVIYNTIIDGL 196

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             S  ++      N   + G++ D  T N L      +G +D    ++  M KR  +P V
Sbjct: 197 CKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDV 256

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            T+N +I+   K G I + EE +++M  R + P+ +TY  L+        + + + +   
Sbjct: 257 FTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGF 316

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + +     D   ++ +I+ Y ++  VE   +LF  M +R  V + +T+  +IQ Y   G 
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGK 376

Query: 327 TEAAQNLENKMI 338
              A+ +   M+
Sbjct: 377 LNVAEEIFKWMV 388



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 118/277 (42%), Gaps = 36/277 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  +S L+ + +K  ++D++  +  +M  LGI  +  T N +++ + +  +     S 
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M++ G   PDI T  S+++ +     I                            Y 
Sbjct: 139 LGKMMKLGH-EPDIVTFGSLLNGFCRGDRI----------------------------YD 169

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
              M+D+M  +        + P VV YN +I+   K+  ++   +   +M+  G++P+++
Sbjct: 170 ALYMFDRMVEM-------GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAV 222

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+S    +G       ++  +   ++  D   FN +I A  + G + +  EL+  M
Sbjct: 223 TYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEM 282

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             R   PD +T++ +I         + A+ +   M++
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVS 319


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 155/354 (43%), Gaps = 38/354 (10%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M++ G +P+V +YT L+  + Q+    +A   + +MK      PD++ Y+ LI   +K  
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKE-QGIAPDIFCYNSLIIGLSKAK 501

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R D     L EM   G++ +A TY   I GY +A +F   +     M E G   P+    
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG-VLPNKVLC 560

Query: 140 NSMISAYGNSGNI-----------------------------------EKMEKWYNEFNL 164
             +I+ Y   G +                                   +  E+ + E   
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRG 620

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G+  D+ +  +L   + + G   K  S+ D M +    P V+ YN+++  F ++G IEK
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEK 680

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
            +E   +M  +G+ PN++TYC+++  Y K+G + +   +  +++   ++ D+  +  ++ 
Sbjct: 681 AKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              +  DVE+   +F T K + C      F  +I      G TE    + N+++
Sbjct: 741 GCCRLNDVERAITIFGTNK-KGCASSTAPFNALINWVFKFGKTELKTEVLNRLM 793



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 158/343 (46%), Gaps = 11/343 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ L K K+ ++A      M+ +GLKP+   Y A +S Y ++     A   + +M+    
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV 553

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL--GIECSAVTYNTIIDGYGKAKKFEE 118
               V    ++ + C K     +IE   A  S +  GI   A TY  +++G  K  K ++
Sbjct: 554 LPNKVLCTGLINEYCKKGK---VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E  F  M    G  PD+F+   +I+ +   GN++K    ++E    G+  ++   N+L 
Sbjct: 611 AEEIFREM-RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLL 669

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + R+G  +K + ++D M  +   P  VTY  +I+ + K+G + +    F +MK +G+ 
Sbjct: 670 GGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLV 729

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+S  Y +LV    +   + +  +I    +        P FN +I+   + G  E   E+
Sbjct: 730 PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAP-FNALINWVFKFGKTELKTEV 788

Query: 299 FLTMK----ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              +     +R   P+++T+  MI      G  EAA+ L ++M
Sbjct: 789 LNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQM 831



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 160/347 (46%), Gaps = 12/347 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + + A  +F  M   G+ P V  Y  L++ + + G + +A S  ++M       P
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE-EGLTP 660

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V  Y++L+    +    +  +++L EMS  G+  +AVTY TIIDGY K+    E    F
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF 720

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK---S 180
             M +  G  PD F   +++       ++E+    +   N  G  +     N L      
Sbjct: 721 DEM-KLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPFNALINWVFK 778

Query: 181 YGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +G+  +  + +  +MD    RF  P  VTYNI+I+   K G++E  +E F +M++  + P
Sbjct: 779 FGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
             ITY SL++ Y K G   ++  +  +   + +  D   ++ II+A+ + G   K   L 
Sbjct: 839 TVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLV 898

Query: 300 LTMKERHCVPDNI-----TFATMIQAYNALGMTEAAQNLENKMIAMK 341
             M  ++ V D       T   ++  +  +G  E A+ +   M+ ++
Sbjct: 899 DQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQ 945



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 145/335 (43%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  + A  L   M+S G+     +Y   +    + G++++A +  + M + S   P
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA-SGLIP 380

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
               Y+ LI+   +        ++L EM    I  S  TY T++ G   +   +   +  
Sbjct: 381 QAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIV 440

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ SG C P++    ++I  +  +       +   E    G+  DI   N L     +
Sbjct: 441 KEMIASG-CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A   D+ RS +  M +    P   TY   I  + +A      ++Y K+M+  G+ PN + 
Sbjct: 500 AKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVL 559

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
              L++ Y K G +++  S  R + +  ++ D   +  +++   +   V+   E+F  M+
Sbjct: 560 CTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMR 619

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +   PD  ++  +I  ++ LG  + A ++ ++M+
Sbjct: 620 GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 7/262 (2%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  YTY +LI    K  R +  + +L EM  LG+     TY+ +IDG  K +  +  +  
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              MV S G +   +  +  I      G +EK +  ++     G+    Q    L + Y 
Sbjct: 335 VHEMV-SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYC 393

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R     +   ++  M+KR    +  TY  V++    +G ++      K+M   G +PN +
Sbjct: 394 REKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV 453

Query: 243 TYCSLVSAY---SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
            Y +L+  +   S+ G  M+V   L++++   +  D   +N +I    +A  +++     
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRV---LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 300 LTMKERHCVPDNITFATMIQAY 321
           + M E    P+  T+   I  Y
Sbjct: 511 VEMVENGLKPNAFTYGAFISGY 532



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 49/295 (16%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           M++ G C+  + E+A  L + M   GL P+   Y  ++  Y +SG L EAF   ++MK +
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK-L 725

Query: 59  SDCKPDVYTYSILIKSCT----------------------------------KFHRFDLI 84
               PD + Y+ L+  C                                   KF + +L 
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELK 785

Query: 85  EKILAEM-----SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
            ++L  +        G + + VTYN +ID   K    E  +  F  M ++    P + T 
Sbjct: 786 TEVLNRLMDGSFDRFG-KPNDVTYNIMIDYLCKEGNLEAAKELFHQM-QNANLMPTVITY 843

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            S+++ Y   G   +M   ++E    G++ D    +++  ++ + GM  K   ++D M  
Sbjct: 844 TSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFA 903

Query: 200 RFFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +         ++ T   ++  F K G +E  E+  + M      P+S T   L++
Sbjct: 904 KNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 8/247 (3%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           TY+ +IDG  K K+ E+ +S    M +S G   D  T + +I       N +  +   +E
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEM-DSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G+       +       + G+ +K +++ D M      P    Y  +IE + +  +
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           + +  E   +MK R +  +  TY ++V     +G +    +I++++  S    +   +  
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK--MIA 339
           +I  + Q         +   MKE+   PD   + ++I     +G+++A +  E +  ++ 
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI-----IGLSKAKRMDEARSFLVE 512

Query: 340 MKENSGK 346
           M EN  K
Sbjct: 513 MVENGLK 519


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 151/343 (44%), Gaps = 16/343 (4%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLG  K   +A  +F  + +   +P+   Y +++      G  ++     N+M +   C 
Sbjct: 168 MLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCF 227

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII-------DGYGKAKK 115
           PD  TYS LI +  K  R D   ++L EM   G++ +   Y  ++       D +G    
Sbjct: 228 PDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSL 287

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           FEEM   +        C PD+FT   +I   G +G I++   ++ E    G + D   +N
Sbjct: 288 FEEMRHQY--------CRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMN 339

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKH 234
            +    G+AG  D    +   M      P+VVTYN +I+  F       ++  +F++MK 
Sbjct: 340 NMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKE 399

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+ P+S TY  L+  + K   + K   +L +++          +  +I A G+A   + 
Sbjct: 400 SGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 459

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             ELF  +KE      +  +A MI+     G  + A N+ ++M
Sbjct: 460 ACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEM 502



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 141/320 (44%), Gaps = 10/320 (3%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + + A  L   M  +G++P+  +YT LV+ + +   +  A S   +M+    C+PDV
Sbjct: 242 KLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRH-QYCRPDV 300

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           +TY+ LI+   K  R D       EM   G     +  N +I+  GKA + ++    F  
Sbjct: 301 FTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQE 360

Query: 126 MVESGGCHPDIFTLNSMISA-YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           M  +  C P + T N++I A + +     ++  W+      G+     T +IL   + + 
Sbjct: 361 M-GTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKT 419

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              +K   +++ M ++ F P    Y  +I+  GKA   +   E F+++K      +S  Y
Sbjct: 420 NRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVY 479

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             ++    KAG +    ++  ++       D   +N ++S   + G +++       M+E
Sbjct: 480 AVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQE 539

Query: 305 RHCVPDNITFATMIQAYNAL 324
             C+PD       I +YN +
Sbjct: 540 HGCIPD-------INSYNII 552



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 5/217 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVSDCK 62
           LGK  + + A  LF+ M +    PSV  Y  ++ A  +S     E  S    MK  S   
Sbjct: 345 LGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKE-SGIS 403

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  +TYSILI    K +R +    +L EM   G       Y ++ID  GKAK+++     
Sbjct: 404 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 123 FSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F  + E+ G     ++ +  MI   G +G ++     ++E N +G   D+   N L    
Sbjct: 464 FQELKENCGSSSSRVYAV--MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGL 521

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
            R GM D+  S M  MQ+    P + +YNI++    K
Sbjct: 522 ARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQK 558



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 113/274 (41%), Gaps = 38/274 (13%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M     +P V  YT L+   G++G +DEA+    +M+    C+PD    + +I   
Sbjct: 287 LFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQR-EGCRPDTIVMNNMINFL 345

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHP 134
            K  R D   K+  EM  L    S VTYNTII    ++K +  E+ S F  M ESG   P
Sbjct: 346 GKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESG-ISP 404

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV------------------KADI----- 171
             FT + +I  +  +  +EK      E +  G                   + D+     
Sbjct: 405 SSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELF 464

Query: 172 ------------QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
                       +   ++ K  G+AG  D   ++ D M K    P V  YN ++    + 
Sbjct: 465 QELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLART 524

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           G +++     ++M+  G  P+  +Y  +++   K
Sbjct: 525 GMLDEALSTMRRMQEHGCIPDINSYNIILNGLQK 558



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 1/241 (0%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           TY  +I      +++ EM      MV +  C      L+ ++   GN+  + K    + +
Sbjct: 125 TYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQ 184

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAG 220
                 +   Q  N +       G Y+K+  + + M      FP  +TY+ +I  F K G
Sbjct: 185 IKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLG 244

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
             +   +   +MK  GM+P +  Y  LV+ + K   +    S+  ++ +     D   + 
Sbjct: 245 RRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYT 304

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +I   G+AG +++    F  M+   C PD I    MI      G  + A  L  +M  +
Sbjct: 305 ELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTL 364

Query: 341 K 341
           +
Sbjct: 365 R 365


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 155/332 (46%), Gaps = 4/332 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+     A L+F  +   GL+P+   +  L++   +S  LDE F     M+  +   PD
Sbjct: 234 CKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEE-NRIYPD 292

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V+TYS+LI    K  R D+ E++  EM   G+  + +T+  +IDG  ++++ +   +++ 
Sbjct: 293 VFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYH 352

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+ + G  PD+   N++++     G++ K  K  +E  ++G+K D  T   L   Y + 
Sbjct: 353 QML-TMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKE 411

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  +    +   M +       V +  +I  F + G +   E   ++M   GMKP+  TY
Sbjct: 412 GDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATY 471

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             ++  Y K G +     +L++++ +        +N +++   + G ++    L   M  
Sbjct: 472 TMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLN 531

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
               PD+IT+  +++ +   G  E    L N+
Sbjct: 532 LGVTPDDITYNILLEGHCKNGKAEDLLKLRNE 563



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 1/259 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V  Y+ILI    K       + I  E+   G+  + V++NT+I+G  K++  +E    
Sbjct: 221 PKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE-GFR 279

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
               +E    +PD+FT + +I      G ++  E+ ++E    G++ +  T   L     
Sbjct: 280 LKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQY 339

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R+   D   +    M      P +V YN ++    K G + K  +   +MK  GMKP+ I
Sbjct: 340 RSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKI 399

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+  Y K G +     I + +    V+LD   F  +IS + + G V         M
Sbjct: 400 TYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREM 459

Query: 303 KERHCVPDNITFATMIQAY 321
            E    PD+ T+  +I  Y
Sbjct: 460 VEAGMKPDDATYTMVIDGY 478



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 126/291 (43%), Gaps = 42/291 (14%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK+   + A  LF+ M   GL+P+   +TAL+    +S  +D A +T + M ++
Sbjct: 298 VLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTM 357

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE- 117
              KPD+  Y+ L+    K    +   K++ EM  +G++   +TY T+IDGY K    E 
Sbjct: 358 G-VKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLES 416

Query: 118 ----------------------------------EMESSFSAMVESGGCHPDIFTLNSMI 143
                                             + E +   MVE+G   PD  T   +I
Sbjct: 417 AMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAG-MKPDDATYTMVI 475

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             Y   GN++   K   E  + G K  + T N+L     + G       +++ M      
Sbjct: 476 DGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVT 535

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           P  +TYNI++E   K G   K E+  K    +G+  +   Y SLVS Y+K+
Sbjct: 536 PDDITYNILLEGHCKNG---KAEDLLKLRNEKGLIVDYAYYTSLVSEYNKS 583



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 101/216 (46%)

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           +F + +   G  P +   N +I+ +   G+I   +  +NE    G++    + N L    
Sbjct: 209 TFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGL 268

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            ++   D+   +   M++   +P V TY+++I    K G ++  E+ F +M+ RG++PN 
Sbjct: 269 CKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNG 328

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           IT+ +L+    ++  +    +   Q+    V  D   +N +++   + GDV K  +L   
Sbjct: 329 ITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDE 388

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           MK     PD IT+ T+I  Y   G  E+A  +   M
Sbjct: 389 MKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGM 424



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 107/229 (46%), Gaps = 18/229 (7%)

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S F+A++++ G     F  ++++ AY +SG +    + +           ++  N     
Sbjct: 138 SVFAAILDTAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRL---------VRNSNFQIPF 188

Query: 181 YGRAGMYDKM------RSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
           +G   + DKM       ++  F  +     F P V  YNI+I  F K G I   +  F +
Sbjct: 189 HGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNE 248

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           ++ RG++P ++++ +L++   K+  + +   + + +E + +  D   ++ +I    + G 
Sbjct: 249 IRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGR 308

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           ++   +LF  M++R   P+ ITF  +I         ++A N  ++M+ M
Sbjct: 309 LDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTM 357


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 155/354 (43%), Gaps = 38/354 (10%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M++ G +P+V +YT L+  + Q+    +A   + +MK      PD++ Y+ LI   +K  
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKE-QGIAPDIFCYNSLIIGLSKAK 501

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R D     L EM   G++ +A TY   I GY +A +F   +     M E G   P+    
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG-VLPNKVLC 560

Query: 140 NSMISAYGNSGNI-----------------------------------EKMEKWYNEFNL 164
             +I+ Y   G +                                   +  E+ + E   
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRG 620

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G+  D+ +  +L   + + G   K  S+ D M +    P V+ YN+++  F ++G IEK
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEK 680

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
            +E   +M  +G+ PN++TYC+++  Y K+G + +   +  +++   ++ D+  +  ++ 
Sbjct: 681 AKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              +  DVE+   +F T K + C      F  +I      G TE    + N+++
Sbjct: 741 GCCRLNDVERAITIFGTNK-KGCASSTAPFNALINWVFKFGKTELKTEVLNRLM 793



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 158/343 (46%), Gaps = 11/343 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ L K K+ ++A      M+ +GLKP+   Y A +S Y ++     A   + +M+    
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV 553

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL--GIECSAVTYNTIIDGYGKAKKFEE 118
               V    ++ + C K     +IE   A  S +  GI   A TY  +++G  K  K ++
Sbjct: 554 LPNKVLCTGLINEYCKKGK---VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E  F  M    G  PD+F+   +I+ +   GN++K    ++E    G+  ++   N+L 
Sbjct: 611 AEEIFREM-RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLL 669

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + R+G  +K + ++D M  +   P  VTY  +I+ + K+G + +    F +MK +G+ 
Sbjct: 670 GGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLV 729

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+S  Y +LV    +   + +  +I    +        P FN +I+   + G  E   E+
Sbjct: 730 PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAP-FNALINWVFKFGKTELKTEV 788

Query: 299 FLTMK----ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              +     +R   P+++T+  MI      G  EAA+ L ++M
Sbjct: 789 LNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQM 831



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 160/347 (46%), Gaps = 12/347 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + + A  +F  M   G+ P V  Y  L++ + + G + +A S  ++M       P
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE-EGLTP 660

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V  Y++L+    +    +  +++L EMS  G+  +AVTY TIIDGY K+    E    F
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF 720

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK---S 180
             M +  G  PD F   +++       ++E+    +   N  G  +     N L      
Sbjct: 721 DEM-KLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPFNALINWVFK 778

Query: 181 YGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +G+  +  + +  +MD    RF  P  VTYNI+I+   K G++E  +E F +M++  + P
Sbjct: 779 FGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
             ITY SL++ Y K G   ++  +  +   + +  D   ++ II+A+ + G   K   L 
Sbjct: 839 TVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLV 898

Query: 300 LTMKERHCVPDNI-----TFATMIQAYNALGMTEAAQNLENKMIAMK 341
             M  ++ V D       T   ++  +  +G  E A+ +   M+ ++
Sbjct: 899 DQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQ 945



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 145/335 (43%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  + A  L   M+S G+     +Y   +    + G++++A +  + M + S   P
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA-SGLIP 380

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
               Y+ LI+   +        ++L EM    I  S  TY T++ G   +   +   +  
Sbjct: 381 QAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIV 440

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ SG C P++    ++I  +  +       +   E    G+  DI   N L     +
Sbjct: 441 KEMIASG-CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A   D+ RS +  M +    P   TY   I  + +A      ++Y K+M+  G+ PN + 
Sbjct: 500 AKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVL 559

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
              L++ Y K G +++  S  R + +  ++ D   +  +++   +   V+   E+F  M+
Sbjct: 560 CTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMR 619

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +   PD  ++  +I  ++ LG  + A ++ ++M+
Sbjct: 620 GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 7/262 (2%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  YTY +LI    K  R +  + +L EM  LG+     TY+ +IDG  K +  +  +  
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              MV S G +   +  +  I      G +EK +  ++     G+    Q    L + Y 
Sbjct: 335 VHEMV-SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYC 393

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R     +   ++  M+KR    +  TY  V++    +G ++      K+M   G +PN +
Sbjct: 394 REKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV 453

Query: 243 TYCSLVSAY---SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
            Y +L+  +   S+ G  M+V   L++++   +  D   +N +I    +A  +++     
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRV---LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 300 LTMKERHCVPDNITFATMIQAY 321
           + M E    P+  T+   I  Y
Sbjct: 511 VEMVENGLKPNAFTYGAFISGY 532



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 49/295 (16%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           M++ G C+  + E+A  L + M   GL P+   Y  ++  Y +SG L EAF   ++MK +
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK-L 725

Query: 59  SDCKPDVYTYSILIKSCT----------------------------------KFHRFDLI 84
               PD + Y+ L+  C                                   KF + +L 
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELK 785

Query: 85  EKILAEM-----SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
            ++L  +        G + + VTYN +ID   K    E  +  F  M ++    P + T 
Sbjct: 786 TEVLNRLMDGSFDRFG-KPNDVTYNIMIDYLCKEGNLEAAKELFHQM-QNANLMPTVITY 843

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            S+++ Y   G   +M   ++E    G++ D    +++  ++ + GM  K   ++D M  
Sbjct: 844 TSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFA 903

Query: 200 RFFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +         ++ T   ++  F K G +E  E+  + M      P+S T   L++
Sbjct: 904 KNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 8/247 (3%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           TY+ +IDG  K K+ E+ +S    M +S G   D  T + +I       N +  +   +E
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEM-DSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G+       +       + G+ +K +++ D M      P    Y  +IE + +  +
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           + +  E   +MK R +  +  TY ++V     +G +    +I++++  S    +   +  
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK--MIA 339
           +I  + Q         +   MKE+   PD   + ++I     +G+++A +  E +  ++ 
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI-----IGLSKAKRMDEARSFLVE 512

Query: 340 MKENSGK 346
           M EN  K
Sbjct: 513 MVENGLK 519


>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
 gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 157/332 (47%), Gaps = 5/332 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P++A  +F  ++  G KPS+  YT L++A       D  +S I+ ++  +   PD   +
Sbjct: 28  KPQEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQVEE-NGMNPDSIFF 86

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I + ++    +   +   +M   G++ +  TYNT+I GYG A K EE       M +
Sbjct: 87  NAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQ 146

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNILTKSYGRAGM 186
            G   P++ T N ++ A+ N   I   E W   + ++  G++ D+ T N +  +Y + G 
Sbjct: 147 EGNVKPNLRTYNVLVRAWCNKKRI--TEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGA 204

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D+   V+  MQ     P   T  I++  + K G I +   +  +MK  G+ PN + + S
Sbjct: 205 LDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNS 264

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+  +        VD +L  +E   V  D   F+ I++A+  AG +EK  E+F  M +  
Sbjct: 265 LIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAG 324

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             PD   ++ + + Y      E A+ L   MI
Sbjct: 325 IEPDAHAYSILAKGYVRAQEPEKAEELLTTMI 356



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 147/321 (45%), Gaps = 6/321 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A   F  M  +G+KP+   Y  L+  YG +G  +E+   +  M    + KP++ TY++
Sbjct: 100 ESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNV 159

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++     R      ++ +M   GI+   VTYNTI   Y +    ++ E     M ++ 
Sbjct: 160 LVRAWCNKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEM-QNN 218

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+  T   ++S Y   G I +  ++      +G+  ++   N L K +      D +
Sbjct: 219 GVQPNERTCGIIMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGV 278

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V++ M++    P V+T++ ++  +  AG +EK  E F  M   G++P++  Y  L   
Sbjct: 279 DEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKG 338

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y +A    K + +L  +  S    +   F  +IS +  AG ++    +F  M +R   P+
Sbjct: 339 YVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPN 398

Query: 311 NITFATMIQAYNALGMTEAAQ 331
             TF T+I      G  EA Q
Sbjct: 399 LKTFETLI-----WGFAEARQ 414



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 139/287 (48%), Gaps = 2/287 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M++ G++P V  Y  + +AY Q G LD+A   I +M++ +  +P+  T  I++    K  
Sbjct: 180 MIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQN-NGVQPNERTCGIIMSGYCKEG 238

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R     +    M  LGI  + V +N++I G+      + ++   + M E  G  PD+ T 
Sbjct: 239 RIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLM-EEFGVKPDVITF 297

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           +++++A+  +G +EK  + +++    G++ D    +IL K Y RA   +K   ++  M K
Sbjct: 298 STIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIK 357

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
             F P VV +  VI  +  AG ++     F KM  RG+ PN  T+ +L+  +++A    K
Sbjct: 358 SGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWK 417

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
            + IL+ +   +V  +      +  A+   G  ++   L  T   + 
Sbjct: 418 AEEILQIMTEFEVQPEKSTMLLVAEAWRATGMTKEANRLLGTRNRKE 464



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 158/319 (49%), Gaps = 9/319 (2%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82
           +G+ P    + A+++A+ +SG ++ A  T   M+  +  KP   TY+ LIK      + +
Sbjct: 77  NGMNPDSIFFNAVINAFSESGNMESAMETFWKMQE-NGMKPTTSTYNTLIKGYGIAGKPE 135

Query: 83  LIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
              K+L  MS  G ++ +  TYN ++  +   K+  E  +    M+ SG   PD+ T N+
Sbjct: 136 ESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKMIASG-IQPDVVTYNT 194

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF---MQ 198
           + +AY   G +++ E    E    GV+ + +T  I+   Y + G   ++R  + F   M+
Sbjct: 195 IATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEG---RIREALRFAYRMK 251

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +    P +V +N +I+ F      + ++E    M+  G+KP+ IT+ ++++A+S AG + 
Sbjct: 252 ELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFME 311

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           K   I   +  + +  D   ++ +   Y +A + EK  EL  TM +    P+ + F T+I
Sbjct: 312 KCREIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVI 371

Query: 319 QAYNALGMTEAAQNLENKM 337
             + + G  + A  + +KM
Sbjct: 372 SGWCSAGKMDYAVRVFDKM 390



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 61/114 (53%)

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G  ++ E  F  +   G KP+ I+Y +L++A +       + SI+ QVE + +  D+ FF
Sbjct: 27  GKPQEAESIFYSLIEGGHKPSLISYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFF 86

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           N +I+A+ ++G++E   E F  M+E    P   T+ T+I+ Y   G  E +  L
Sbjct: 87  NAVINAFSESGNMESAMETFWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKL 140



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKP 63
           + ++PE+A  L   M+  G +P+V ++T ++S +  +G +D A    + M  + +S   P
Sbjct: 341 RAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRGIS---P 397

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
           ++ T+  LI    +  +    E+IL  M+   ++    T   + + +
Sbjct: 398 NLKTFETLIWGFAEARQPWKAEEILQIMTEFEVQPEKSTMLLVAEAW 444


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 143/309 (46%), Gaps = 2/309 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA  L + M   G KP V  Y  L++   + G LDEA   +N+M S   CKP+V T++I+
Sbjct: 261 QAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG-CKPNVITHNII 319

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           ++S     R+   E++L++M   G   S VT+N +I+   + +           M + G 
Sbjct: 320 LRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG- 378

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  + N ++  +     +++  ++       G   DI T N L  +  + G  D   
Sbjct: 379 CVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAV 438

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +++ +  +   P ++TYN VI+   K G  E   E  ++M+ +G+KP+ ITY +L+   
Sbjct: 439 EILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGL 498

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + G + +   I   +E   +      +N I+    +A    +  +    M E+ C P  
Sbjct: 499 GREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTE 558

Query: 312 ITFATMIQA 320
            T+  +I+ 
Sbjct: 559 ATYTILIEG 567



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 150/326 (46%), Gaps = 3/326 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G CK  E    L EV+    + P V  Y  ++ +   SG L EA   + D +   +C PD
Sbjct: 185 GYCKSGEIDKAL-EVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVL-DRQLQRECYPD 242

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ILI++           K+L EM   G +   VTYN +I+G  K  + +E     +
Sbjct: 243 VITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLN 302

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M  S GC P++ T N ++ +  ++G     E+  ++    G    + T NIL     R 
Sbjct: 303 NM-PSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRK 361

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
            +  +   V++ M K    P  ++YN ++  F +   +++  EY + M  RG  P+ +TY
Sbjct: 362 RLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTY 421

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L++A  K G +     IL Q+ +         +N +I    + G  E   EL   M+ 
Sbjct: 422 NTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRR 481

Query: 305 RHCVPDNITFATMIQAYNALGMTEAA 330
           +   PD IT++T+++     G  + A
Sbjct: 482 KGLKPDIITYSTLLRGLGREGKVDEA 507



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 163/347 (46%), Gaps = 25/347 (7%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C+  + ++A+ + E++ + G  P V  Y  L+  Y +SG +D+A   +  M SV+
Sbjct: 147 LIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM-SVA 205

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIID------GYG 111
              PDV TY+ +++S     +     ++L     L  EC    +TY  +I+      G G
Sbjct: 206 ---PDVVTYNTILRSLCDSGKLKEAMEVLDRQ--LQRECYPDVITYTILIEATCNDSGVG 260

Query: 112 KAKKF-EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
           +A K  +EM           GC PD+ T N +I+     G +++  K+ N     G K +
Sbjct: 261 QAMKLLDEMRKK--------GCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPN 312

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           + T NI+ +S    G +     ++  M ++   P+VVT+NI+I    +   + +  +  +
Sbjct: 313 VITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLE 372

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           KM   G  PNS++Y  L+  + +   + +    L  + +     D   +N +++A  + G
Sbjct: 373 KMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG 432

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            V+   E+   +  + C P  IT+ T+I     +G TE A  L  +M
Sbjct: 433 KVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEM 479



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 137/328 (41%), Gaps = 32/328 (9%)

Query: 41  QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 100
           ++G L+E    +  M    D  PDV   + LI+   +  +     +I+  +   G     
Sbjct: 118 RNGELEEGLKFLERMIYQGDI-PDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDV 176

Query: 101 VTYNTIIDGYGKA----KKFEEME------------SSFSAMVESGG------------- 131
           +TYN +I GY K+    K  E +E            +   ++ +SG              
Sbjct: 177 ITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQ 236

Query: 132 --CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
             C+PD+ T   +I A  N   + +  K  +E    G K D+ T N+L     + G  D+
Sbjct: 237 RECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDE 296

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
               ++ M      P V+T+NI++ +    G     E     M  +G  P+ +T+  L++
Sbjct: 297 AIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILIN 356

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
              +  L+ +   +L ++     + ++  +N ++  + Q   +++  E    M  R C P
Sbjct: 357 FLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYP 416

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
           D +T+ T++ A    G  +AA  + N++
Sbjct: 417 DIVTYNTLLTALCKDGKVDAAVEILNQL 444



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 112/267 (41%), Gaps = 27/267 (10%)

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS--FSAMVESG---------------G 131
            +++ +G+E S +       G   ++ FEE  S+     +V +G               G
Sbjct: 84  GDLNVIGMESSPI-------GVNGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQG 136

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+    S+I  +  SG  +K  +        G   D+ T N+L   Y ++G  DK  
Sbjct: 137 DIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKAL 196

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V++ M      P VVTYN ++ +   +G +++  E   +   R   P+ ITY  L+ A 
Sbjct: 197 EVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEAT 253

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
                + +   +L ++       D   +N +I+   + G +++  +    M    C P+ 
Sbjct: 254 CNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNV 313

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           IT   ++++  + G    A+ L + M+
Sbjct: 314 ITHNIILRSMCSTGRWMDAERLLSDML 340



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E A  L E M   GLKP +  Y+ L+   G+ G +DEA    +DM+ +S  KP
Sbjct: 463 LTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLS-IKP 521

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
              TY+ ++    K  +       LA M   G + +  TY  +I+G
Sbjct: 522 SAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEG 567


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 164/341 (48%), Gaps = 20/341 (5%)

Query: 15  LLFEVMLSDGLKPSV----------------DVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           L+ E+ +S  LK +V                D+Y  ++  + +   +D+A     +M+  
Sbjct: 123 LIREIAISGSLKHAVHVFRWMKNQENYCARNDIYGMMIRLHARHNKVDQARGLFFEMQEW 182

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             CKP+  TY+ LI +  +  ++     I+ +M    I  S  TYN +I+  G A  +++
Sbjct: 183 R-CKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKK 241

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  M E+ G  PD+ T N ++SA+ N     K   ++       V  D  T+NI+ 
Sbjct: 242 ALELCKKMTEN-GVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVI 300

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
               + G+Y +   + + M++R     P VVTY  ++ ++   G  E  +  F  M   G
Sbjct: 301 HCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEG 360

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           ++PN ++Y +L+ AY+  G+  +     + ++ + +  D   +  +++AYG++   EK  
Sbjct: 361 VRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAR 420

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           E+F  M++  C P+ +++  +I AY + GM + A +L ++M
Sbjct: 421 EVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEM 461



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 152/327 (46%), Gaps = 2/327 (0%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C Q E    +F++M+++G++P++  Y AL+ AY   G+  EA  T   +K  +  +PD+ 
Sbjct: 343 CGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQ-NGLRPDIV 401

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +Y+ L+ +  +  + +   ++  EM     + + V+YN +ID YG A   +E  S    M
Sbjct: 402 SYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEM 461

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E  G  PD+ +++++++A G    + K++         G++ +    N    SY   G 
Sbjct: 462 -EQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGD 520

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y K   +   M+     P  VTYNI+I    K G   +  ++F+ M    +      Y S
Sbjct: 521 YKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSS 580

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++ +Y K G + +  S    ++ +    D   +  +I AY   G   +  +LF  M+   
Sbjct: 581 VICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNG 640

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNL 333
             PD I  +++++A N  G  E    L
Sbjct: 641 TQPDAIVCSSLMEALNKGGQPERVLQL 667



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 160/327 (48%), Gaps = 12/327 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G     ++A  L + M  +G+ P +  +  ++SA+       +A +    MKS S   PD
Sbjct: 234 GAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKS-SKVAPD 292

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESS 122
             T +I+I    K   +    ++   M      C    VTY +I+  Y    + E  ++ 
Sbjct: 293 TCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAV 352

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLM---GVKADIQTLNILT 178
           F  MV + G  P+I + N+++ AY + G + E +E     F L+   G++ DI +   L 
Sbjct: 353 FDIMV-AEGVRPNIVSYNALLGAYASHGMHTEALET----FKLLKQNGLRPDIVSYTSLL 407

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YGR+   +K R V + M+K    P  V+YN +I+ +G AG +++      +M+  G++
Sbjct: 408 NAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQ 467

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ I+  +L++A  +   + K+D IL   ++  + L+T  +N  I +Y   GD +K   L
Sbjct: 468 PDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVL 527

Query: 299 FLTMKERHCVPDNITFATMIQAYNALG 325
           + +M+  +  PD +T+  +I     LG
Sbjct: 528 YTSMRAGNVKPDAVTYNILISGSCKLG 554



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 165/365 (45%), Gaps = 37/365 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA  LF  M     KP+ D Y +L+ A+ ++G    A + ++DM+  +   P   TY+ 
Sbjct: 170 DQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAA-IPPSRTTYNN 228

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMESS- 122
           +I +C     +    ++  +M+  G+    +T+N ++  +    +       FE M+SS 
Sbjct: 229 VINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSK 288

Query: 123 ---------------------------FSAMVES-GGCHPDIFTLNSMISAYGNSGNIEK 154
                                      F++M E    CHPD+ T  S++ +Y   G  E 
Sbjct: 289 VAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAEN 348

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
            +  ++     GV+ +I + N L  +Y   GM+ +       +++    P +V+Y  ++ 
Sbjct: 349 CKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLN 408

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +G++   EK  E F +M+    KPN ++Y +L+ AY  AG++ +  S+L ++E   +  
Sbjct: 409 AYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQP 468

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           D    + +++A G+   + K+  +    K R    + + + + I +Y +LG  + A  L 
Sbjct: 469 DVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLY 528

Query: 335 NKMIA 339
             M A
Sbjct: 529 TSMRA 533



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 164/337 (48%), Gaps = 8/337 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  QPE+A  +F  M  +  KP+   Y AL+ AYG +G+L EA S +++M+     +PD
Sbjct: 411 GRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQ-DGIQPD 469

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V + S L+ +C +  +   I+ ILA     GI+ + V YN+ I  Y     +++    ++
Sbjct: 470 VISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYT 529

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           +M  +G   PD  T N +IS     G   +  K++ +   + +    +  + +  SY + 
Sbjct: 530 SM-RAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQ 588

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +  S  + M++   FP V+TY  +I+ +   G   +  + FK+M++ G +P++I  
Sbjct: 589 GKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVC 648

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+ A +K G   +V  ++  ++   + L+   +  IIS+     D +   ++   +  
Sbjct: 649 SSLMEALNKGGQPERVLQLIEFMKQKKIQLNQKAYFEIISSCTMLRDWKTASQIIEHLDS 708

Query: 305 RHCVPDNITFATMIQAYNAL---GMTEAAQNLENKMI 338
                 +I+F T+    N L   G TE+   L  KM+
Sbjct: 709 S---LSSISFGTLNHILNFLGKCGRTESMMKLFYKMV 742



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 165/375 (44%), Gaps = 41/375 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK-SVSDCKPDVYT 67
           Q  +A   FE+M S  + P       ++    + GL  EA    N M+   + C PDV T
Sbjct: 273 QYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVT 332

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ ++ S +   + +  + +   M   G+  + V+YN ++  Y       E   +F  ++
Sbjct: 333 YTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFK-LL 391

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           +  G  PDI +  S+++AYG S   EK  + +NE      K +  + N L  +YG AGM 
Sbjct: 392 KQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGML 451

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM---------- 237
            +  S++  M++    P V++ + ++   G+   + K++      K RG+          
Sbjct: 452 KEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSG 511

Query: 238 -------------------------KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
                                    KP+++TY  L+S   K G  ++       + + ++
Sbjct: 512 IGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNI 571

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
            L    ++ +I +Y + G + +    F +MKE  C PD +T+ T+I+AY+  G    A +
Sbjct: 572 HLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWD 631

Query: 333 LENKMIAMKENSGKK 347
           L  +M    EN+G +
Sbjct: 632 LFKEM----ENNGTQ 642



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+ +  MI  +     +++    + E      K +  T N L  ++ RAG +    ++M
Sbjct: 154 DIYGM--MIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIM 211

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D MQ+    P+  TYN VI   G AG+ +K  E  KKM   G+ P+ IT+  ++SA+   
Sbjct: 212 DDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNG 271

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 312
               K  +    +++S V  DT   N +I    + G   +  ELF +M+ER   C PD +
Sbjct: 272 AQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVV 331

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           T+ +++ +Y+  G  E  + + + M+A
Sbjct: 332 TYTSIMYSYSVCGQAENCKAVFDIMVA 358


>gi|410110109|gb|AFV61134.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
           diamantinensis]
          Length = 363

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           +A S  + +K  S   PD+  Y+ +I    K   F     +++EM   G+  +  +Y+T+
Sbjct: 4   KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 62

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
           +  Y + KKF E    FS M E   C  D+ T N MI  YG  G  ++ +K +     MG
Sbjct: 63  LTMYVENKKFLEALXVFSEMREIK-CLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 121

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           ++ ++ + N L + YG A ++ +   +   MQ++     VVTYN ++  +GK    EK  
Sbjct: 122 IEPNVVSYNTLLRVYGDAELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKAN 181

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              ++M+ RG++PNSITY +++S + K G + +   + +++ ++ V +D   F  +I AY
Sbjct: 182 NLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVAY 241

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +AG +     L   +K     PDNI   T I      G  E A
Sbjct: 242 ERAGLIAHAKRLLHELKR----PDNIPRDTAIHILAGAGRIEEA 281



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 166/357 (46%), Gaps = 41/357 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +   G  P +  Y A+++ +G++ L  EA S I++MK+ +   P+  +YS L+   
Sbjct: 8   IFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKT-AGVMPNTTSYSTLLTMY 66

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +F     + +EM  +       T N +ID YG+    +E +  F  M    G  P+
Sbjct: 67  VENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGM-RKMGIEPN 125

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
           + + N+++  YG++   E   +  + F LM    ++ ++ T N +   YG+   ++K  +
Sbjct: 126 VVSYNTLLRVYGDA---ELFGESIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANN 182

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++  MQ R   P  +TY+ +I  +GK G +++    F+K++  G++ + I + +++ AY 
Sbjct: 183 LIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSTGVEIDQILFQTMIVAYE 242

Query: 253 KAGLIMKVDSILRQVENSDVI-LDTPF---------------FNCIISAYGQAGDV---E 293
           +AGLI     +L +++  D I  DT                 F   I A G+  D+   E
Sbjct: 243 RAGLIAHAKRLLHELKRPDNIPRDTAIHILAGAGRIEEATYVFRQAIDA-GEVKDITVFE 301

Query: 294 KM-------------GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +M              E+F  M+     PD+   A ++ AY  L   + A ++  +M
Sbjct: 302 RMIHLLSKYKKYANVVEVFDKMRGLGYFPDSNVIAVVLNAYGKLQEFDKANDVYMEM 358



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 69/135 (51%)

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y K  S+   +++  F P +V YN +I  FGKA    +      +MK  G+ PN+ +Y +
Sbjct: 2   YSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYST 61

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++ Y +    ++   +  ++     +LD    N +I  YGQ G  ++  +LF  M++  
Sbjct: 62  LLTMYVENKKFLEALXVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMG 121

Query: 307 CVPDNITFATMIQAY 321
             P+ +++ T+++ Y
Sbjct: 122 IEPNVVSYNTLLRVY 136


>gi|18417671|ref|NP_567856.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635625|sp|O65567.2|PP342_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30825, chloroplastic; Flags: Precursor
 gi|332660415|gb|AEE85815.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 904

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 153/312 (49%), Gaps = 8/312 (2%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L+  + S G+      ++ +V  Y ++G L+EA S +  M    D  PDVY +  +
Sbjct: 576 EAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDM 635

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           ++   K    D ++ +   +   GI  +   YN +I+   +A   +E+  +F  M+  G 
Sbjct: 636 LRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGF 695

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQTLNILTKSYGRAGMYD 188
             P+  T N ++  YG +    K+ K  NE  L+  +    D+ + N +  +YG+   Y 
Sbjct: 696 T-PNTVTFNVLLDVYGKA----KLFKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKDYT 750

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
            M S +  MQ   F  ++  YN +++ +GK   +EK     K+MK     P+  TY  ++
Sbjct: 751 NMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMI 810

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           + Y + G I +V  +L++++ S +  D   +N +I AYG  G VE+   L   M+ R+ +
Sbjct: 811 NIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNII 870

Query: 309 PDNITFATMIQA 320
           PD +T+  ++ A
Sbjct: 871 PDKVTYTNLVTA 882



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 7/229 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP--DVYTY 68
           ++ S  FE M+  G  P+   +  L+  YG++ L    F  +N++  ++      DV +Y
Sbjct: 681 DELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKL----FKKVNELFLLAKRHGVVDVISY 736

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I +  K   +  +   +  M + G   S   YNT++D YGK K+ E+  S    M +
Sbjct: 737 NTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKK 796

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           S    PD +T N MI+ YG  G I+++     E    G+  D+ + N L K+YG  GM +
Sbjct: 797 STS-GPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVE 855

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
           +   ++  M+ R   P  VTY  ++    +     +  ++   MK  G+
Sbjct: 856 EAVGLVKEMRGRNIIPDKVTYTNLVTALRRNDEFLEAIKWSLWMKQMGI 904



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 140/325 (43%), Gaps = 42/325 (12%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  + ++M  D ++  ++ +  +++AY Q G                           
Sbjct: 296 DKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQG--------------------------- 328

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
                    + +L E IL  M   G   + + YNT+I GYGK  K E  +  F  +    
Sbjct: 329 ---------KMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNI- 378

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD-K 189
           G  PD  +  SMI  +G + N E+ + +Y E    G K +   L  L     + G  D  
Sbjct: 379 GLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCGYKPNSFNLFTLINLQAKYGDRDGA 438

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           ++++ D       + +++   I+++ + K G I+ +    K   H  ++ N  ++ SLV 
Sbjct: 439 IKTIEDMTGIGCQYSSIL--GIILQAYEKVGKIDVVPCVLKGSFHNHIRLNQTSFSSLVM 496

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF-LTMKERHCV 308
           AY K G++     +LR+ +  D   ++  ++ +I +  ++G +    +++   M+    +
Sbjct: 497 AYVKHGMVDDCLGLLREKKWRDSAFESHLYHLLICSCKESGQLTDAVKIYNHKMESDEEI 556

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
             +IT +TMI  Y  +G    A+ L
Sbjct: 557 NLHIT-STMIDIYTVMGEFSEAEKL 580



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 117/265 (44%), Gaps = 3/265 (1%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            YS++++   +   +D  E ++ E+  +   + S   +NT+I    K    +     F  
Sbjct: 176 AYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNVKLASKWFHM 235

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+E G   P++ T+  ++  Y  + N+E+ E  ++     G+  +    +++T  Y R  
Sbjct: 236 MLEFG-VRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCESAYSSMIT-IYTRLR 293

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           +YDK   V+D M++      +  + +++  + + G +E  E     M+  G  PN I Y 
Sbjct: 294 LYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSPNIIAYN 353

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L++ Y K   +     +  ++ N  +  D   +  +I  +G+A + E+    +  +K  
Sbjct: 354 TLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRC 413

Query: 306 HCVPDNITFATMIQAYNALGMTEAA 330
              P++    T+I      G  + A
Sbjct: 414 GYKPNSFNLFTLINLQAKYGDRDGA 438



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 133/314 (42%), Gaps = 14/314 (4%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL--IKSCTKFHRFDLIEKILAEMS 92
           L + +  +G +D  +S I   +S+  C        IL  ++SC+  +     + +     
Sbjct: 116 LENLFVNNGEIDVNYSAIKPGQSLEHCN------GILKRLESCSDTNAIKFFDWMRCNGK 169

Query: 93  YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152
            +G   + V Y+ I+   G+ ++++  E     +             N++I A    GN+
Sbjct: 170 LVG---NFVAYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNV 226

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           +   KW++     GV+ ++ T+ +L   Y +    ++       M+K F       Y+ +
Sbjct: 227 KLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRK-FGIVCESAYSSM 285

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           I  + +    +K EE    MK   ++     +  +++AYS+ G +   +SIL  +E +  
Sbjct: 286 ITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGF 345

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
             +   +N +I+ YG+   +E    LF  +      PD  ++ +MI+ +      E A++
Sbjct: 346 SPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKH 405

Query: 333 L--ENKMIAMKENS 344
              E K    K NS
Sbjct: 406 YYQELKRCGYKPNS 419


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 159/346 (45%), Gaps = 7/346 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYS 69
           +QA  +FE M   GL PS+  Y  ++  YG+ G   D+    +++M++    + D +T S
Sbjct: 249 KQAIAMFERMKDCGLSPSLVTYNVMLDVYGKMGRSWDKILDLLDEMRN-EGLQFDEFTCS 307

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            +I +C +    +  ++   E+   G E   VTYN ++  +GKA  + E  +    M E 
Sbjct: 308 TVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEM-ED 366

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
             C  D  T N +++AY  +G  E+     +     GV  +  T   +  +YGRAG   K
Sbjct: 367 NNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVK 426

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              + + M+K    P V TYN ++   GK    E+M +    M+  G  PN IT+ +L++
Sbjct: 427 ALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLA 486

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
                G    V+ + R+++N         FN +ISAYG+ G      +++  M +    P
Sbjct: 487 MCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTP 546

Query: 310 DNITFATMIQAYNALGMTEAAQ----NLENKMIAMKENSGKKLIQC 351
              T+  ++ A    G  +AA+    ++ NK     E S   ++ C
Sbjct: 547 CATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHC 592



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 158/368 (42%), Gaps = 39/368 (10%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A   F  + S G +P    Y AL+  +G++G+  EA + + +M+  ++C  D  TY+ L
Sbjct: 321 EAKEFFVELKSSGYEPGTVTYNALLQVFGKAGIYSEALNILKEMED-NNCTLDSVTYNEL 379

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG- 130
           + +  +   ++    ++  M+  G+  +AVTY T+I+ YG+A K  +    F+ M +SG 
Sbjct: 380 VAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGC 439

Query: 131 ---------------------------------GCHPDIFTLNSMISAYGNSGNIEKMEK 157
                                            GC P+  T N++++  G+ G  + +  
Sbjct: 440 VPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNH 499

Query: 158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
            + E    G +    T N L  +YGR G       + D M K  F P   TYN ++    
Sbjct: 500 VFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALA 559

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           + G  +  E     M+++G KPN  ++  ++  Y+K G +  ++ I + + +  +     
Sbjct: 560 RRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWV 619

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               +I A  +   V  M   F  + +    PD + F +M+  +    M E AQ    KM
Sbjct: 620 LLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQ----KM 675

Query: 338 IAMKENSG 345
           + +   SG
Sbjct: 676 LDLIRESG 683



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 166/362 (45%), Gaps = 37/362 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+ + + + M   G+ P+   YT +++AYG++G   +A    N MK  S C P+V TY+ 
Sbjct: 390 EEGATVIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKK-SGCVPNVCTYNS 448

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K  R + + KIL++M   G   + +T+NT++   G   K + +   F  M ++ 
Sbjct: 449 ILALLGKKSRSEEMIKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREM-KNC 507

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P   T N++ISAYG  G+     K Y+E    G      T N L  +  R G +   
Sbjct: 508 GFEPGKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAA 567

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----------------------------- 221
            SV+  M+ + F P   ++++++  + K G+                             
Sbjct: 568 ESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILA 627

Query: 222 ------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                 +  ME  F+++   G KP+ + + S++S ++K  +  +   +L  +  S +  D
Sbjct: 628 NFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPD 687

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N +++ Y + G+  K  E+   + +    PD +++ T+I+ +   G+ + A  + +
Sbjct: 688 LVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMS 747

Query: 336 KM 337
           +M
Sbjct: 748 EM 749



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 147/318 (46%), Gaps = 9/318 (2%)

Query: 26  KPSVDVY--TALVSAYGQSGLLDEAFSTINDMKSVSDC--KPDVYTYSILIKSCTKFHR- 80
           K S+DV   T ++ AY ++G   +A +    MK   DC   P + TY++++    K  R 
Sbjct: 227 KYSLDVRACTTILHAYSRNGKYKQAIAMFERMK---DCGLSPSLVTYNVMLDVYGKMGRS 283

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
           +D I  +L EM   G++    T +T+I   G+     E +  F  + +S G  P   T N
Sbjct: 284 WDKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVEL-KSSGYEPGTVTYN 342

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           +++  +G +G   +      E        D  T N L  +Y RAG Y++  +V+D M ++
Sbjct: 343 ALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRK 402

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P  VTY  VI  +G+AG   K  + F +MK  G  PN  TY S+++   K     ++
Sbjct: 403 GVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEM 462

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             IL  +  +    +   +N +++  G  G  + +  +F  MK     P   TF T+I A
Sbjct: 463 IKILSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISA 522

Query: 321 YNALGMTEAAQNLENKMI 338
           Y   G    A  + ++M+
Sbjct: 523 YGRCGSELDAAKMYDEMM 540



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 162/328 (49%), Gaps = 24/328 (7%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTA----LVSAYGQSGLLDEAFSTINDMKSV 58
           +LGK    E+A LLFE ++S+ +   V + +     ++   G+      A   ++     
Sbjct: 170 VLGK---SERAILLFEWVVSNSVSGDVKLDSKAVELMIRILGRESKYSIALKLLD----- 221

Query: 59  SDCKPDVYTYSILIKSCTK-FHRFDLIEK------ILAEMSYLGIECSAVTYNTIIDGYG 111
              K  +  YS+ +++CT   H +    K      +   M   G+  S VTYN ++D YG
Sbjct: 222 ---KIPIDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCGLSPSLVTYNVMLDVYG 278

Query: 112 K-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
           K  + ++++      M  + G   D FT +++ISA G  G I + ++++ E    G +  
Sbjct: 279 KMGRSWDKILDLLDEM-RNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPG 337

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
             T N L + +G+AG+Y +  +++  M+        VTYN ++  + +AG  E+      
Sbjct: 338 TVTYNALLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVID 397

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            M  +G+ PN++TY ++++AY +AG  +K   +  Q++ S  + +   +N I++  G+  
Sbjct: 398 TMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKS 457

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMI 318
             E+M ++   M+   C P+ IT+ T++
Sbjct: 458 RSEEMIKILSDMRINGCPPNRITWNTLL 485



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/386 (19%), Positives = 157/386 (40%), Gaps = 70/386 (18%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  +  +A  LF  M   G  P+V  Y ++++  G+    +E    ++DM+ ++ C P+
Sbjct: 419 GRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMR-INGCPPN 477

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-------AKKFE 117
             T++ L+  C    +   +  +  EM   G E    T+NT+I  YG+       AK ++
Sbjct: 478 RITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYD 537

Query: 118 EM-------------------------------------------ESSFSAMVE------ 128
           EM                                           E+SFS M+       
Sbjct: 538 EMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKGG 597

Query: 129 -------------SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
                         G   P    L ++I A      +  ME+ + E    G K D+   N
Sbjct: 598 NVRGLERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMKNGYKPDMVIFN 657

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +   + +  MY++ + ++D +++    P +VTYN ++  + + G   K EE  K +   
Sbjct: 658 SMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKS 717

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G  P+ ++Y +++  + + GL+ +   ++ ++    +      +N  +S Y   G   ++
Sbjct: 718 GESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMFAEV 777

Query: 296 GELFLTMKERHCVPDNITFATMIQAY 321
            E+   M +++C P+ +T+  ++  Y
Sbjct: 778 DEVISYMIQKNCKPNELTYKIIVDGY 803



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 135/285 (47%), Gaps = 2/285 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C     A+ +++ M+  G  P    Y AL++A  + G    A S + DM++    KP+
Sbjct: 524 GRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRN-KGFKPN 582

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             ++S+++    K      +E+I  ++    I  S V   T+I    K +    ME +F 
Sbjct: 583 ETSFSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFE 642

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            ++++G   PD+   NSM+S +  +   E+ +K  +     G++ D+ T N L   Y R 
Sbjct: 643 ELMKNG-YKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYARR 701

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   K   ++  + K    P +V+YN +I+ F + G +++      +M  RG+ P   TY
Sbjct: 702 GECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTY 761

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
            + VS Y+  G+  +VD ++  +   +   +   +  I+  Y +A
Sbjct: 762 NTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKA 806


>gi|357123530|ref|XP_003563463.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 862

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 149/319 (46%), Gaps = 4/319 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA +L   ML  G+ P    Y  +V A+ ++G L        +M       PD   Y  
Sbjct: 262 DQAEMLLRAMLEAGVLPDTASYRHIVDAFARAGDLSRVAELFREMADTGHT-PDPSAYLG 320

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++ T+         +L +M   G   +A TY  ++D YG+  +F+ +   F  M    
Sbjct: 321 LMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREM--RT 378

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T N + S +G+ G  +++ + +++    G++ D++T   +  + G+ G+++  
Sbjct: 379 AVPPDTATYNVLFSVFGDGGFFKEVVELFHDMLRTGIEPDMETCEGVLVACGQGGLHEDA 438

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R V+D++ K    PT   Y  ++E  G A   E+    F  M   G  P   TY SL + 
Sbjct: 439 REVLDYITKEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANV 498

Query: 251 YSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           ++K GL  + +SI  ++ NS  I  +   F+ +I AY Q   ++   + ++ M++    P
Sbjct: 499 FAKGGLFQEAESIFSRMTNSAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNP 558

Query: 310 DNITFATMIQAYNALGMTE 328
           D  +   ++ AY   G+ +
Sbjct: 559 DERSLEGVLNAYCIAGVID 577



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/348 (20%), Positives = 146/348 (41%), Gaps = 45/348 (12%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH----RFDLIEKI 87
           YT+L++AY ++ L +EA + ++ MK+     P   TY+ ++ +C +       FD++  +
Sbjct: 171 YTSLIAAYARNALHEEARALLDQMKAAG-VAPTAATYNTVLAACARATDPPVPFDMLLGL 229

Query: 88  LAEMSY---LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            AEM +     +     TYNT++         ++ E    AM+E+G   PD  +   ++ 
Sbjct: 230 FAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAG-VLPDTASYRHIVD 288

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKAD---------------------------------- 170
           A+  +G++ ++ + + E    G   D                                  
Sbjct: 289 AFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCAP 348

Query: 171 -IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
              T  +L   YGR G +D +R +   M +    P   TYN++   FG  G  +++ E F
Sbjct: 349 TAATYRVLLDLYGRQGRFDGVRELFREM-RTAVPPDTATYNVLFSVFGDGGFFKEVVELF 407

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
             M   G++P+  T   ++ A  + GL      +L  +    ++     +  ++ A G A
Sbjct: 408 HDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVLDYITKEGMVPTAKAYTGLVEALGHA 467

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              E+    F  M E   +P   T+ ++   +   G+ + A+++ ++M
Sbjct: 468 AMYEEAYVAFNMMTEIGSLPTIETYNSLANVFAKGGLFQEAESIFSRM 515



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/315 (20%), Positives = 136/315 (43%), Gaps = 11/315 (3%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           + A+   + + G    +      M+  S C+PD + ++I+I    +     L++K L   
Sbjct: 100 FAAVYREFSRRGDWQRSVRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVF 158

Query: 92  SYLGIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
             L  +  +A++Y ++I  Y +    EE  +    M ++ G  P   T N++++A   + 
Sbjct: 159 HDLPADSRTALSYTSLIAAYARNALHEEARALLDQM-KAAGVAPTAATYNTVLAACARAT 217

Query: 151 NIE-KMEKWYNEFNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           +     +     F  M       V+ D+ T N L  +     + D+   ++  M +    
Sbjct: 218 DPPVPFDMLLGLFAEMRHDVSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVL 277

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P   +Y  +++ F +AG + ++ E F++M   G  P+   Y  L+ A+++ G   +  ++
Sbjct: 278 PDTASYRHIVDAFARAGDLSRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAV 337

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           LRQ++          +  ++  YG+ G  + + ELF  M+     PD  T+  +   +  
Sbjct: 338 LRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREMRT-AVPPDTATYNVLFSVFGD 396

Query: 324 LGMTEAAQNLENKMI 338
            G  +    L + M+
Sbjct: 397 GGFFKEVVELFHDML 411



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 107/227 (47%), Gaps = 13/227 (5%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL---NILTK 179
           F  M     C PD      +I   G  G    ++K    F+   + AD +T      L  
Sbjct: 120 FKYMQRQSWCRPDEHIHAIVIGVLGRQGPA-LLDKCLEVFH--DLPADSRTALSYTSLIA 176

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----IEKMEEYFKKMKH- 234
           +Y R  ++++ R+++D M+     PT  TYN V+    +A       + +   F +M+H 
Sbjct: 177 AYARNALHEEARALLDQMKAAGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHD 236

Query: 235 --RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
               ++P+  TY +L++A +   L  + + +LR +  + V+ DT  +  I+ A+ +AGD+
Sbjct: 237 VSPAVRPDLTTYNTLLAAAAVRSLNDQAEMLLRAMLEAGVLPDTASYRHIVDAFARAGDL 296

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            ++ ELF  M +    PD   +  +++A+  +G T  A  +  +M A
Sbjct: 297 SRVAELFREMADTGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQA 343



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 99/218 (45%), Gaps = 1/218 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  ML  G++P ++    ++ A GQ GL ++A   + D  +     P    Y+ L+++ 
Sbjct: 406 LFHDMLRTGIEPDMETCEGVLVACGQGGLHEDAREVL-DYITKEGMVPTAKAYTGLVEAL 464

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                ++        M+ +G   +  TYN++ + + K   F+E ES FS M  S G   +
Sbjct: 465 GHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANVFAKGGLFQEAESIFSRMTNSAGIQKN 524

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             + +++I AY     ++   K Y E        D ++L  +  +Y  AG+ D+ +   +
Sbjct: 525 KDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFE 584

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            +Q     P+++ Y +++  + +        +  ++MK
Sbjct: 585 EIQSNMAVPSIIAYCMMLSLYARNDRWADAYDLLEEMK 622



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 71/162 (43%), Gaps = 7/162 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG     E+A + F +M   G  P+++ Y +L + + + GL  EA S  + M + +  + 
Sbjct: 464 LGHAAMYEEAYVAFNMMTEIGSLPTIETYNSLANVFAKGGLFQEAESIFSRMTNSAGIQK 523

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  ++  LI++  +  + D   K   EM          +   +++ Y  A   +E +  F
Sbjct: 524 NKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQF 583

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
              ++S    P I     M+S Y  +      ++W + ++L+
Sbjct: 584 EE-IQSNMAVPSIIAYCMMLSLYARN------DRWADAYDLL 618


>gi|2980784|emb|CAA18211.1| puative protein [Arabidopsis thaliana]
 gi|7269983|emb|CAB79800.1| puative protein [Arabidopsis thaliana]
          Length = 1075

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 153/312 (49%), Gaps = 8/312 (2%)

Query: 12   QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            +A  L+  + S G+      ++ +V  Y ++G L+EA S +  M    D  PDVY +  +
Sbjct: 747  EAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDM 806

Query: 72   IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
            ++   K    D ++ +   +   GI  +   YN +I+   +A   +E+  +F  M+  G 
Sbjct: 807  LRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGF 866

Query: 132  CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQTLNILTKSYGRAGMYD 188
              P+  T N ++  YG +    K+ K  NE  L+  +    D+ + N +  +YG+   Y 
Sbjct: 867  T-PNTVTFNVLLDVYGKA----KLFKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKDYT 921

Query: 189  KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
             M S +  MQ   F  ++  YN +++ +GK   +EK     K+MK     P+  TY  ++
Sbjct: 922  NMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMI 981

Query: 249  SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
            + Y + G I +V  +L++++ S +  D   +N +I AYG  G VE+   L   M+ R+ +
Sbjct: 982  NIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNII 1041

Query: 309  PDNITFATMIQA 320
            PD +T+  ++ A
Sbjct: 1042 PDKVTYTNLVTA 1053



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 7/229 (3%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP--DVYTY 68
            ++ S  FE M+  G  P+   +  L+  YG++ L    F  +N++  ++      DV +Y
Sbjct: 852  DELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKL----FKKVNELFLLAKRHGVVDVISY 907

Query: 69   SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
            + +I +  K   +  +   +  M + G   S   YNT++D YGK K+ E+  S    M +
Sbjct: 908  NTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKK 967

Query: 129  SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            S    PD +T N MI+ YG  G I+++     E    G+  D+ + N L K+YG  GM +
Sbjct: 968  STS-GPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVE 1026

Query: 189  KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            +   ++  M+ R   P  VTY  ++    +     +  ++   MK  G+
Sbjct: 1027 EAVGLVKEMRGRNIIPDKVTYTNLVTALRRNDEFLEAIKWSLWMKQMGI 1075



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 140/325 (43%), Gaps = 42/325 (12%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  + ++M  D ++  ++ +  +++AY Q G                           
Sbjct: 467 DKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQG--------------------------- 499

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
                    + +L E IL  M   G   + + YNT+I GYGK  K E  +  F  +    
Sbjct: 500 ---------KMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNI- 549

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD-K 189
           G  PD  +  SMI  +G + N E+ + +Y E    G K +   L  L     + G  D  
Sbjct: 550 GLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCGYKPNSFNLFTLINLQAKYGDRDGA 609

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           ++++ D       + +++   I+++ + K G I+ +    K   H  ++ N  ++ SLV 
Sbjct: 610 IKTIEDMTGIGCQYSSIL--GIILQAYEKVGKIDVVPCVLKGSFHNHIRLNQTSFSSLVM 667

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF-LTMKERHCV 308
           AY K G++     +LR+ +  D   ++  ++ +I +  ++G +    +++   M+    +
Sbjct: 668 AYVKHGMVDDCLGLLREKKWRDSAFESHLYHLLICSCKESGQLTDAVKIYNHKMESDEEI 727

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
             +IT +TMI  Y  +G    A+ L
Sbjct: 728 NLHIT-STMIDIYTVMGEFSEAEKL 751



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 117/265 (44%), Gaps = 3/265 (1%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            YS++++   +   +D  E ++ E+  +   + S   +NT+I    K    +     F  
Sbjct: 347 AYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNVKLASKWFHM 406

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+E G   P++ T+  ++  Y  + N+E+ E  ++     G+  +    +++T  Y R  
Sbjct: 407 MLEFG-VRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCESAYSSMIT-IYTRLR 464

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           +YDK   V+D M++      +  + +++  + + G +E  E     M+  G  PN I Y 
Sbjct: 465 LYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSPNIIAYN 524

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L++ Y K   +     +  ++ N  +  D   +  +I  +G+A + E+    +  +K  
Sbjct: 525 TLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRC 584

Query: 306 HCVPDNITFATMIQAYNALGMTEAA 330
              P++    T+I      G  + A
Sbjct: 585 GYKPNSFNLFTLINLQAKYGDRDGA 609



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 133/314 (42%), Gaps = 14/314 (4%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL--IKSCTKFHRFDLIEKILAEMS 92
           L + +  +G +D  +S I   +S+  C        IL  ++SC+  +     + +     
Sbjct: 287 LENLFVNNGEIDVNYSAIKPGQSLEHCN------GILKRLESCSDTNAIKFFDWMRCNGK 340

Query: 93  YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152
            +G   + V Y+ I+   G+ ++++  E     +             N++I A    GN+
Sbjct: 341 LVG---NFVAYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNV 397

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           +   KW++     GV+ ++ T+ +L   Y +    ++       M+K F       Y+ +
Sbjct: 398 KLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRK-FGIVCESAYSSM 456

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           I  + +    +K EE    MK   ++     +  +++AYS+ G +   +SIL  +E +  
Sbjct: 457 ITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGF 516

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
             +   +N +I+ YG+   +E    LF  +      PD  ++ +MI+ +      E A++
Sbjct: 517 SPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKH 576

Query: 333 L--ENKMIAMKENS 344
              E K    K NS
Sbjct: 577 YYQELKRCGYKPNS 590


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 138/277 (49%), Gaps = 1/277 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEME 120
           +P+  TY+ +I       R     +++ EM   G I     TY T+I G+ K  + E+  
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAV 203

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M+  G   P     N++I  Y + G ++   ++  +    G+   + T N+L  +
Sbjct: 204 KVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHA 263

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                      +V++ MQK  F P V TYNI+I  + K G+ +K  E F++M  +G++  
Sbjct: 264 LFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRAT 323

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           ++TY SL+  +S+ G + + D +        +  D   +N +I+++   GD+E+  E+  
Sbjct: 324 AVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMA 383

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M+++   PD++T+ T+++ +  LG  + A+ L ++M
Sbjct: 384 EMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEM 420



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 148/349 (42%), Gaps = 35/349 (10%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P+   Y  +++ +   G +  A   + +M+      PD YTY+ LI    K  R +   
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAV 203

Query: 86  KILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-------------- 130
           K+  EM   G +  SAV YN +I GY    K +        MV+ G              
Sbjct: 204 KVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHA 263

Query: 131 --------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
                               G  PD+FT N +I+ Y   GN +K  + + E +  GV+A 
Sbjct: 264 LFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRAT 323

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
             T   L   + R G   +   + +   K+   P VV YN +I +    G +E+  E   
Sbjct: 324 AVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMA 383

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           +M+ + + P+ +TY +L+  +   G + +  +++ ++    +  D   +N +IS Y   G
Sbjct: 384 EMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKG 443

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           D++    +   M ++   P  +T+  +IQ    +   + A+NL  +M+A
Sbjct: 444 DIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVA 492



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 132/317 (41%), Gaps = 75/317 (23%)

Query: 5   GKCK--QPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDM------ 55
           G CK  + E A  +F+ ML+ G + PS  +Y AL+  Y   G LD A     DM      
Sbjct: 192 GWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIA 251

Query: 56  ----------------KSVSDC------------KPDVYTYSILIKS-CTKFHRFDLIEK 86
                              SD              PDV+TY+ILI   C + +    +E 
Sbjct: 252 MTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALE- 310

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  EMS  G+  +AVTY ++I  + +  + +E +  F+  V+ G   PD+   N++I+++
Sbjct: 311 VFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKG-IRPDVVMYNALINSH 369

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF----- 201
              G++E+  +   E     +  D  T N L + +   G  D+ R+++D M KR      
Sbjct: 370 CTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDL 429

Query: 202 ------------------------------FFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
                                         F PT++TYN +I+   K    +  E   K+
Sbjct: 430 VSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKE 489

Query: 232 MKHRGMKPNSITYCSLV 248
           M  +G+ P+  TY SL+
Sbjct: 490 MVAKGITPDDSTYISLI 506


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 155/353 (43%), Gaps = 36/353 (10%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M++ G +P+V +YT L+  + Q+    +A   + +MK      PD++ Y+ LI   +K  
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKE-QGIAPDIFCYNSLIIGLSKAK 501

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--------- 130
           R D     L EM   G++ +A TY   I GY +A +F   +     M E G         
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561

Query: 131 -------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
                                    G   D  T   +++    +  ++  E+ + E    
Sbjct: 562 GLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G+  D+ +  +L   + + G   K  S+ D M +    P V+ YN+++  F ++G IEK 
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           +E   +M  +G+ PN++TYC+++  Y K+G + +   +  +++   ++ D+  +  ++  
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +  DVE+   +F T K + C      F  +I      G TE    + N+++
Sbjct: 742 CCRLNDVERAITIFGTNK-KGCASSTAPFNALINWVFKFGKTELKTEVLNRLM 793



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 158/343 (46%), Gaps = 11/343 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ L K K+ ++A      M+ +GLKP+   Y A +S Y ++     A   + +M+    
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV 553

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL--GIECSAVTYNTIIDGYGKAKKFEE 118
               V    ++ + C K     +IE   A  S +  GI   A TY  +++G  K  K ++
Sbjct: 554 LPNKVLCTGLINEYCKKEK---VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E  F  M    G  PD+F+   +I+ +   GN++K    ++E    G+  ++   N+L 
Sbjct: 611 AEEIFREM-RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLL 669

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + R+G  +K + ++D M  +   P  VTY  +I+ + K+G + +    F +MK +G+ 
Sbjct: 670 GGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLV 729

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+S  Y +LV    +   + +  +I    +        P FN +I+   + G  E   E+
Sbjct: 730 PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAP-FNALINWVFKFGKTELKTEV 788

Query: 299 FLTMK----ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              +     +R   P+++T+  MI      G  EAA+ L ++M
Sbjct: 789 LNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQM 831



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 160/347 (46%), Gaps = 12/347 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + + A  +F  M   G+ P V  Y  L++ + + G + +A S  ++M       P
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE-EGLTP 660

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V  Y++L+    +    +  +++L EMS  G+  +AVTY TIIDGY K+    E    F
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF 720

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK---S 180
             M +  G  PD F   +++       ++E+    +   N  G  +     N L      
Sbjct: 721 DEM-KLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPFNALINWVFK 778

Query: 181 YGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +G+  +  + +  +MD    RF  P  VTYNI+I+   K G++E  +E F +M++  + P
Sbjct: 779 FGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
             ITY SL++ Y K G   ++  +  +   + +  D   ++ II+A+ + G   K   L 
Sbjct: 839 TVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLV 898

Query: 300 LTMKERHCVPDNI-----TFATMIQAYNALGMTEAAQNLENKMIAMK 341
             M  ++ V D       T   ++  +  +G  E A+ +   M+ ++
Sbjct: 899 DQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQ 945



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 144/335 (42%), Gaps = 2/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  + A  L   M+S G+     +Y   +    + G++++A +  + M + S   P
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA-SGLIP 380

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
               Y+ LI+   +        ++L EM    I  S  TY T++ G   +   +   +  
Sbjct: 381 QAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIV 440

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ SG C P++    ++I  +  +       +   E    G+  DI   N L     +
Sbjct: 441 KEMIASG-CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A   D+ RS +  M +    P   TY   I  + +A      ++Y K+M+  G+ PN + 
Sbjct: 500 AKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVL 559

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
              L++ Y K   +++  S  R + +  ++ D   +  +++   +   V+   E+F  M+
Sbjct: 560 CTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMR 619

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +   PD  ++  +I  ++ LG  + A ++ ++M+
Sbjct: 620 GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 7/262 (2%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  YTY +LI    K  R +  + +L EM  LG+     TY+ +IDG  K +  +  +  
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              MV S G +   +  +  I      G +EK +  ++     G+    Q    L + Y 
Sbjct: 335 VHEMV-SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYC 393

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R     +   ++  M+KR    +  TY  V++    +G ++      K+M   G +PN +
Sbjct: 394 REKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV 453

Query: 243 TYCSLVSAY---SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
            Y +L+  +   S+ G  M+V   L++++   +  D   +N +I    +A  +++     
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRV---LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 300 LTMKERHCVPDNITFATMIQAY 321
           + M E    P+  T+   I  Y
Sbjct: 511 VEMVENGLKPNAFTYGAFISGY 532



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 49/295 (16%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           M++ G C+  + E+A  L + M   GL P+   Y  ++  Y +SG L EAF   ++MK +
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK-L 725

Query: 59  SDCKPDVYTYSILIKSCT----------------------------------KFHRFDLI 84
               PD + Y+ L+  C                                   KF + +L 
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELK 785

Query: 85  EKILAEM-----SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
            ++L  +        G + + VTYN +ID   K    E  +  F  M ++    P + T 
Sbjct: 786 TEVLNRLMDGSFDRFG-KPNDVTYNIMIDYLCKEGNLEAAKELFHQM-QNANLMPTVITY 843

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            S+++ Y   G   +M   ++E    G++ D    +++  ++ + GM  K   ++D M  
Sbjct: 844 TSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFA 903

Query: 200 RFFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +         ++ T   ++  F K G +E  E+  + M      P+S T   L++
Sbjct: 904 KNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 8/247 (3%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           TY+ +IDG  K K+ E+ +S    M +S G   D  T + +I       N +  +   +E
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEM-DSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G+       +       + G+ +K +++ D M      P    Y  +IE + +  +
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           + +  E   +MK R +  +  TY ++V     +G +    +I++++  S    +   +  
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK--MIA 339
           +I  + Q         +   MKE+   PD   + ++I     +G+++A +  E +  ++ 
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI-----IGLSKAKRMDEARSFLVE 512

Query: 340 MKENSGK 346
           M EN  K
Sbjct: 513 MVENGLK 519


>gi|326527817|dbj|BAJ88981.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 149/309 (48%), Gaps = 2/309 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  L   M  DG+  +   Y  L+ AY ++G L++++  + +MK     + D   YS L+
Sbjct: 141 ADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWG-IRLDTAGYSTLV 199

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
           +       +     ++ EM  +G+E     YN +ID +GK  +  +    F  M    G 
Sbjct: 200 RLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKM-RGQGI 258

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PDI T N++I  +   GN+++  ++       G+  D +    +    G  G +D+++ 
Sbjct: 259 KPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINKLGEQGKWDELKE 318

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           + D M+ R F  +   Y ++++ +G+ GH    +E    +K   ++ +   +C L +AY+
Sbjct: 319 LFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLANAYA 378

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           + GL  +  S+L+ +E   +  +    N +I+A+  AG   +   +F  +K+    PD +
Sbjct: 379 QQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQAVFQHIKDSGMSPDVV 438

Query: 313 TFATMIQAY 321
           T+ T+++A+
Sbjct: 439 TYTTLMKAF 447



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 133/289 (46%), Gaps = 6/289 (2%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           L  +   + DM++    +P    Y+ LI++  +  R    E +L EM +LG+   A  YN
Sbjct: 68  LARSLQLLADMQAAG-MRPSAAAYARLIRALARAGRALEAEALLLEMRHLGLRPDAAHYN 126

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY--NEF 162
            +++G   A+    +       +   G   +  T   ++ AY  +G +E  + W+   E 
Sbjct: 127 ALLEGL-LARAHLRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLE--DSWWVLGEM 183

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              G++ D    + L + Y  +GM+ K   ++  MQ+      V  YN +I+TFGK G +
Sbjct: 184 KRWGIRLDTAGYSTLVRLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQL 243

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
               + F+KM+ +G+KP+  T+ +L+  + + G + +    L  ++   +  D   F  I
Sbjct: 244 ADARKMFEKMRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITI 303

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           I+  G+ G  +++ ELF  M+ R        +A ++  Y   G    AQ
Sbjct: 304 INKLGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQ 352



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 122/270 (45%), Gaps = 12/270 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ L   M   G++  V +Y  L+  +G+ G L +A      M+     KPD+ T++ 
Sbjct: 209 KKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRG-QGIKPDIETWNA 267

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV--- 127
           LI+   +        + LA M   G+      + TII+  G+  K++E++  F  M    
Sbjct: 268 LIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINKLGEQGKWDELKELFDKMRNRG 327

Query: 128 --ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
             ESG     I+ +  ++  YG  G+    ++         ++       +L  +Y + G
Sbjct: 328 FKESGA----IYAV--LVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLANAYAQQG 381

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           + ++  SV+  M+     P +V  N++I  F  AG   + +  F+ +K  GM P+ +TY 
Sbjct: 382 LCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQAVFQHIKDSGMSPDVVTYT 441

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           +L+ A+ +     KV  +  ++E +    D
Sbjct: 442 TLMKAFMRVKRYEKVSEVYSEMERAGCTPD 471



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 111/237 (46%), Gaps = 4/237 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  Q   A  +FE M   G+KP ++ + AL+  + + G +  A   +  M+      PD
Sbjct: 238 GKYGQLADARKMFEKMRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQE-EGMYPD 296

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              +  +I    +  ++D ++++  +M   G + S   Y  ++D YG+   F + +   +
Sbjct: 297 PKIFITIINKLGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVA 356

Query: 125 AM-VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           A+  E+    P IF +  + +AY   G  E+           G++ ++  LN+L  ++  
Sbjct: 357 ALKAENLQLSPSIFCV--LANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFST 414

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           AG + + ++V   ++     P VVTY  +++ F +    EK+ E + +M+  G  P+
Sbjct: 415 AGRHLEAQAVFQHIKDSGMSPDVVTYTTLMKAFMRVKRYEKVSEVYSEMERAGCTPD 471



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 62/137 (45%)

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           MQ     P+   Y  +I    +AG   + E    +M+H G++P++  Y +L+        
Sbjct: 78  MQAAGMRPSAAAYARLIRALARAGRALEAEALLLEMRHLGLRPDAAHYNALLEGLLARAH 137

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           +   D +L Q+ +  V  +   +  ++ AY +AG +E    +   MK      D   ++T
Sbjct: 138 LRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTAGYST 197

Query: 317 MIQAYNALGMTEAAQNL 333
           +++ Y   GM + A +L
Sbjct: 198 LVRLYRDSGMWKKATDL 214



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 4/175 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-DCK 62
           LG+  + ++   LF+ M + G K S  +Y  LV  YGQ G   +A   +  +K+ +    
Sbjct: 307 LGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLS 366

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P ++   +L  +  +    +    +L  M   GIE + V  N +I+ +  A +  E ++ 
Sbjct: 367 PSIFC--VLANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQAV 424

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           F  + +S G  PD+ T  +++ A+      EK+ + Y+E    G   D +   +L
Sbjct: 425 FQHIKDS-GMSPDVVTYTTLMKAFMRVKRYEKVSEVYSEMERAGCTPDRKAREML 478



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G++        L ++  RAG   +  +++  M+     P    YN ++E      H+   
Sbjct: 82  GMRPSAAAYARLIRALARAGRALEAEALLLEMRHLGLRPDAAHYNALLEGLLARAHLRLA 141

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           +    +M   G+  N  TY  L+ AY++AG +     +L +++   + LDT  ++ ++  
Sbjct: 142 DRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTAGYSTLVRL 201

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           Y  +G  +K  +L + M+E     D   +  +I  +   G    A+ +  KM
Sbjct: 202 YRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKM 253


>gi|242094172|ref|XP_002437576.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
 gi|241915799|gb|EER88943.1| hypothetical protein SORBIDRAFT_10g029640 [Sorghum bicolor]
          Length = 429

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 150/302 (49%), Gaps = 2/302 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  DG+  +   YT L+ AY ++G L++++  + +M+     + D   YS+L++      
Sbjct: 71  MADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRR-RGIRLDTAGYSMLVRLYRDNG 129

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
            +     ++ EM  +G+E     Y+ +ID +GK  +  +    F  M  + G  PDI T 
Sbjct: 130 MWKKAIDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRVFDKM-RAEGIKPDISTW 188

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N++I  +   GN+++  +++      G+  D +   ++    G  G +D+++ + D M+ 
Sbjct: 189 NALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMKN 248

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R F  +   Y ++++ +G+ GH     E    ++   M+ +   +C L +AY++ GL  +
Sbjct: 249 RGFKESGAVYAVLVDIYGQYGHFRDARECIAALRAENMQLSPRVFCVLANAYAQQGLCEQ 308

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
             ++L+ +E      +    N +I+A+G AG   +   +F  +K+    PD +T+ T+++
Sbjct: 309 TVNVLQLMEEEGFEPNLVMLNLLINAFGTAGRHLEALAVFQHIKDSGMSPDVVTYTTLMK 368

Query: 320 AY 321
            +
Sbjct: 369 TF 370



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 115/241 (47%), Gaps = 10/241 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK  Q   A  +F+ M ++G+KP +  + AL+  + + G +  A      M+      P
Sbjct: 160 FGKYGQLADARRVFDKMRAEGIKPDISTWNALIQWHCRVGNMKRALRFFTSMQE-EGMYP 218

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   + ++I    +  ++D I+K+   M   G + S   Y  ++D YG+   F +     
Sbjct: 219 DPKIFVMIISRLGEQGKWDEIKKLFDGMKNRGFKESGAVYAVLVDIYGQYGHFRDARECI 278

Query: 124 SAM-VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTK 179
           +A+  E+    P +F +  + +AY   G  E+     N   LM   G + ++  LN+L  
Sbjct: 279 AALRAENMQLSPRVFCV--LANAYAQQGLCEQT---VNVLQLMEEEGFEPNLVMLNLLIN 333

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           ++G AG + +  +V   ++     P VVTY  +++TF +A   EK+ E +++M+  G  P
Sbjct: 334 AFGTAGRHLEALAVFQHIKDSGMSPDVVTYTTLMKTFMRAKKFEKVSEVYREMERAGCTP 393

Query: 240 N 240
           +
Sbjct: 394 D 394



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 135/314 (42%), Gaps = 2/314 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M + G +PS   Y  L+ A  ++G   EA + + +M+     +PD   Y+ L++      
Sbjct: 1   MQASGGRPSSGAYARLIRALSRAGRALEAEALLLEMRR-HGPRPDAAHYNALLEGLLAAA 59

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
              L +++L +M+  G+  +  TY  ++  Y +A + E+       M   G    D    
Sbjct: 60  HLRLADRLLLQMADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRRG-IRLDTAGY 118

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           + ++  Y ++G  +K      E   +GV+ D++  + L  ++G+ G     R V D M+ 
Sbjct: 119 SMLVRLYRDNGMWKKAIDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRVFDKMRA 178

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P + T+N +I+   + G++++   +F  M+  GM P+   +  ++S   + G   +
Sbjct: 179 EGIKPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDE 238

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           +  +   ++N         +  ++  YGQ G      E    ++  +       F  +  
Sbjct: 239 IKKLFDGMKNRGFKESGAVYAVLVDIYGQYGHFRDARECIAALRAENMQLSPRVFCVLAN 298

Query: 320 AYNALGMTEAAQNL 333
           AY   G+ E   N+
Sbjct: 299 AYAQQGLCEQTVNV 312



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 4/175 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-DCK 62
           LG+  + ++   LF+ M + G K S  VY  LV  YGQ G   +A   I  +++ +    
Sbjct: 230 LGEQGKWDEIKKLFDGMKNRGFKESGAVYAVLVDIYGQYGHFRDARECIAALRAENMQLS 289

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V+   +L  +  +    +    +L  M   G E + V  N +I+ +G A +  E  + 
Sbjct: 290 PRVFC--VLANAYAQQGLCEQTVNVLQLMEEEGFEPNLVMLNLLINAFGTAGRHLEALAV 347

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           F  + +S G  PD+ T  +++  +  +   EK+ + Y E    G   D +   +L
Sbjct: 348 FQHIKDS-GMSPDVVTYTTLMKTFMRAKKFEKVSEVYREMERAGCTPDRKAREML 401



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 75/163 (46%)

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L ++  RAG   +  +++  M++    P    YN ++E    A H+   +    +M   G
Sbjct: 16  LIRALSRAGRALEAEALLLEMRRHGPRPDAAHYNALLEGLLAAAHLRLADRLLLQMADDG 75

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           +  N  TY  L+ AY++AG +     +L ++    + LDT  ++ ++  Y   G  +K  
Sbjct: 76  VARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRRGIRLDTAGYSMLVRLYRDNGMWKKAI 135

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +L + M+E     D   ++ +I  +   G    A+ + +KM A
Sbjct: 136 DLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRVFDKMRA 178


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 96/336 (28%), Positives = 158/336 (47%), Gaps = 9/336 (2%)

Query: 2    VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
            ++ G C+  E  QA  L E M    +  +  +Y  +++   + G   EA   ++ M + S
Sbjct: 1703 IVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTS 1762

Query: 60   DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAK-K 115
             C PD+YTY+ILI +  K  R +  + ++  M         VTYNT+I G    G  + +
Sbjct: 1763 -CAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFR 1821

Query: 116  FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
             E     F  MV+ G   P   T   +I A       E+ +K  +  +  G   D+ T N
Sbjct: 1822 VERAFRLFEEMVDKGHT-PTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYN 1880

Query: 176  ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +L   + +AGM DK   +   M  R   P VVTYN +++ F KAG +E+  + F +MK R
Sbjct: 1881 MLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKAR 1940

Query: 236  GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            G+ PN  TY S+  A  KAG +    + L ++    ++ D   +  +IS   + G  +  
Sbjct: 1941 GIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLV-DAISYVALISTICKLGKGKLG 1999

Query: 296  GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
             +L   M E+   P+ +TF  + +A +    T+ A+
Sbjct: 2000 FQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAK 2035



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 58/259 (22%), Positives = 119/259 (45%), Gaps = 5/259 (1%)

Query: 85   EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            + ++AE      + +A TY+TI+ GY +  +  +  +    M +      +    N +++
Sbjct: 1682 QMLIAESKPSSFQANAFTYSTIVRGYCEDGETRQALALLEHM-KKAEVPANAKLYNIILT 1740

Query: 145  AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
                 G  ++     +         DI T NIL  +  + G  +  + +++ MQ R    
Sbjct: 1741 HLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPT 1800

Query: 205  TVVTYNIVIETFGKAGH----IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
             +VTYN +I    + G+    +E+    F++M  +G  P S+TY  ++ A  +  +  + 
Sbjct: 1801 DIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQA 1860

Query: 261  DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
              +L  +  +    D   +N +I+ + +AG ++K  +LF+ M  R C+PD +T+ +++  
Sbjct: 1861 QKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDG 1920

Query: 321  YNALGMTEAAQNLENKMIA 339
            +   G  E A  L  +M A
Sbjct: 1921 FCKAGKVEEANKLFAEMKA 1939



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 11/233 (4%)

Query: 11   EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            E+A  LFE M+  G  P+   YT ++ A  +  + DE    + D+   + C  D+ TY++
Sbjct: 1823 ERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKM-DEQAQKVLDLMHENGCAFDLVTYNM 1881

Query: 71   LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            LI    K    D    +  EM   G     VTYN+I+DG+ KA K EE    F+ M ++ 
Sbjct: 1882 LINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEM-KAR 1940

Query: 131  GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK----SYGRAGM 186
            G  P+  T  S+  A   +G ++    +  E    G+   I  + +++       G+ G 
Sbjct: 1941 GIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAISYVALISTICKLGKGKLGF 2000

Query: 187  YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                  ++  M ++ F P +VT+N+V E   K  + +  +   ++++ +   P
Sbjct: 2001 -----QLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQELRQQHSSP 2048


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 142/273 (52%), Gaps = 2/273 (0%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  ML DGL P    + +L++A  + G L++A +  ++M  +   + D+YTY+  I +  
Sbjct: 40  FRQMLKDGLCPDRKTFNSLLAACSRVGHLEDARAVFDEMIHLGIGR-DIYTYNTFIDAIC 98

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K    +L  ++L +M   G++ + VTY+T+IDGY K +K+EE       M +S     D 
Sbjct: 99  KCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKM-KSMRIQLDR 157

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
              N++++ Y  +G   ++    +E   +G++ D  T N L   YG+ G  D +  ++  
Sbjct: 158 VCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQD 217

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M+KR   P+V+TY+ +I+ + KAG        +   K  G+KP+ + + S +   +K GL
Sbjct: 218 MRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGL 277

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           I    S+L  +    +  +   +N II A+G++
Sbjct: 278 IEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKS 310



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 141/307 (45%), Gaps = 3/307 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKS 74
           + E M   GL+P+   Y A++ A G+ G+ L         M     C PD  T++ L+ +
Sbjct: 3   VLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLC-PDRKTFNSLLAA 61

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
           C++    +    +  EM +LGI     TYNT ID   K    E        M E+ G  P
Sbjct: 62  CSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDM-EAKGVKP 120

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           ++ T +++I  Y      E+  K   +   M ++ D    N L   Y +AG Y ++ +V 
Sbjct: 121 NVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVC 180

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M++       VTYN +I  +GK G ++ +    + M+ RG+ P+ +TY +L+  YSKA
Sbjct: 181 DEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKA 240

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G+     ++    + S +  D   F+  I    + G +E    L   M E    P+ +T+
Sbjct: 241 GMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTY 300

Query: 315 ATMIQAY 321
             +I A+
Sbjct: 301 NAIIDAF 307



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 158/337 (46%), Gaps = 27/337 (8%)

Query: 3   MLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +L  C +    E A  +F+ M+  G+   +  Y   + A  + G ++ A   + DM++  
Sbjct: 58  LLAACSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEA-K 116

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KP+V TYS LI   +K  +++   K+  +M  + I+   V YNT++  Y KA K+ E+
Sbjct: 117 GVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEI 176

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            +    M E  G   D  T NS+I+ YG  G ++ +     +    GV   + T + L  
Sbjct: 177 ANVCDEM-EELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLID 235

Query: 180 SYGRAGMY-DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            Y +AGM+ D     +DF ++    P VV ++  I+T  K G IE        M   G+K
Sbjct: 236 IYSKAGMHGDAFNVYLDF-KESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIK 294

Query: 239 PNSITYCSLVSAYSKAGLIMKVDS------ILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           PN +TY +++ A+ K+ ++M+ DS      I+       V +  P     +S  G++   
Sbjct: 295 PNVVTYNAIIDAFGKSKVMMEDDSEVGDMGIVGVYGGQIVRVANP-----VSRGGRSATD 349

Query: 293 EKMG---------ELFLTMKERHCVPDNITFATMIQA 320
            +M          ELF  M ++   P+ +TF+ ++ A
Sbjct: 350 VRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNA 386



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 128/251 (50%), Gaps = 8/251 (3%)

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           +L  M   G+  + V+YN +ID  GK           F  M++ G C PD  T NS+++A
Sbjct: 3   VLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLC-PDRKTFNSLLAA 61

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
               G++E     ++E   +G+  DI T N    +  + G  +    V+  M+ +   P 
Sbjct: 62  CSRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPN 121

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFK---KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
           VVTY+ +I+ + K   +EK EE  K   KMK   ++ + + Y +L++ Y KAG   ++ +
Sbjct: 122 VVTYSTLIDGYSK---LEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIAN 178

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           +  ++E   +  DT  +N +I+ YG+ G ++ +  L   M++R   P  +T++T+I  Y+
Sbjct: 179 VCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYS 238

Query: 323 ALGMTEAAQNL 333
             GM   A N+
Sbjct: 239 KAGMHGDAFNV 249



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 47/293 (16%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC   E A  +   M + G+KP+V  Y+ L+  Y +    +EA      MKS+   + D 
Sbjct: 99  KCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSMR-IQLDR 157

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             Y+ L+    K  ++  I  +  EM  LGIE   VTYN++I+GYGK  + + + S    
Sbjct: 158 VCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLD-IVSILVQ 216

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
            +   G  P + T +++I  Y  +G        Y +F   G+K D+   +    +  + G
Sbjct: 217 DMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNG 276

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA--------------------GHIEKM 225
           + +   S+++ M +    P VVTYN +I+ FGK+                    G I ++
Sbjct: 277 LIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVGDMGIVGVYGGQIVRV 336

Query: 226 E-------------------------EYFKKMKHRGMKPNSITYCSLVSAYSK 253
                                     E F+KM  +G++PN +T+ ++++A S+
Sbjct: 337 ANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFSAILNACSR 389



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 14/220 (6%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  + +  S+L + M   G+ PSV  Y+ L+  Y ++G+  +AF+   D K  S  KPD
Sbjct: 203 GKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKE-SGLKPD 261

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V  +S  I +  K    +    +L +M+ +GI+ + VTYN IID +GK+K   E +S   
Sbjct: 262 VVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVG 321

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---------GVKADIQTLN 175
            M   G     I  + + +S  G S    +M +    F ++         GV+ ++ T +
Sbjct: 322 DMGIVGVYGGQIVRVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNVVTFS 381

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVVTYNIVI 213
            +  +  R   ++    +++  Q R F  F   V Y +++
Sbjct: 382 AILNACSRCNSFEDAALLLE--QLRLFDNFVYGVAYGLLV 419



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 80/150 (53%), Gaps = 1/150 (0%)

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           V++ M+     PT V+YN VI+  GK G  +     YF++M   G+ P+  T+ SL++A 
Sbjct: 3   VLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAAC 62

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           S+ G +    ++  ++ +  +  D   +N  I A  + G++E   ++ L M+ +   P+ 
Sbjct: 63  SRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNV 122

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +T++T+I  Y+ L   E A  L  KM +M+
Sbjct: 123 VTYSTLIDGYSKLEKYEEALKLCEKMKSMR 152


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 155/353 (43%), Gaps = 36/353 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------ 57
           LGK  +P+ A   F+  ++ G   +V   +AL+SAY +SGL++EA   +  MK       
Sbjct: 208 LGKMSRPDLARRAFDAGIAGGYGNTVFANSALISAYARSGLVNEAMGVLESMKGAGLRPT 267

Query: 58  -------VSDCK----------------------PDVYTYSILIKSCTKFHRFDLIEKIL 88
                  +  C                       PD  T++ L+ +C++    +    + 
Sbjct: 268 TVTYNAVIDACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALF 327

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            EM +LGI     TYNT ID   K    E        M E+    P++ T +++I  Y  
Sbjct: 328 DEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDM-EAKNVKPNVVTYSTLIDGYSK 386

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
               ++  K Y +   +G++ D    N +   Y +AG Y ++  V D M+        VT
Sbjct: 387 LEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVT 446

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +I  +GK G ++ +    + M+ RG+ P+ +TY +L+  YSKAG+     ++    +
Sbjct: 447 YNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFK 506

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            S +  D   F+  I    + G VE    L   M E    P+ +T+ T+I A+
Sbjct: 507 ESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAF 559



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 144/274 (52%), Gaps = 4/274 (1%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  ML D L P    + +L+SA  ++G L++A +  ++M  +   + D+YTY+  I +  
Sbjct: 292 FRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGR-DIYTYNTFIDAIC 350

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K    +L  ++L +M    ++ + VTY+T+IDGY K +K++E    +  M +S G   D 
Sbjct: 351 KCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKM-KSLGIQLDR 409

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
              N++++ Y  +G   ++    +E    G++ D  T N L   YG+ G  D +  ++  
Sbjct: 410 VCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQD 469

Query: 197 MQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
           M++R   P+V+TY+ +I+ + KAG H +    Y    K  G+KP+ + + S +   +K G
Sbjct: 470 MRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYL-DFKESGLKPDVVLFSSFIDTLAKNG 528

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           L+    S+L  +    +  +   +N II A+G++
Sbjct: 529 LVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKS 562



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 158/331 (47%), Gaps = 16/331 (4%)

Query: 3   MLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +L  C +    E A  LF+ M+  G+   +  Y   + A  + G ++ A   + DM++  
Sbjct: 310 LLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEA-K 368

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           + KP+V TYS LI   +K  ++D   K+  +M  LGI+   V YNT++  Y KA K+ E+
Sbjct: 369 NVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEI 428

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 M E  G   D  T NS+I+ YG  G ++ +     +    GV   + T + L  
Sbjct: 429 AIVCDEM-EDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLID 487

Query: 180 SYGRAGMY-DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            Y +AGM+ D     +DF ++    P VV ++  I+T  K G +E        M   G+K
Sbjct: 488 IYSKAGMHGDAFNVYLDF-KESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIK 546

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQ-----VENSDVILD----TPFFNCIISAYGQA 289
           PN +TY +++ A+ K+ ++ + D    +     V N  +I      T   + I     ++
Sbjct: 547 PNVVTYNTIIDAFGKSKVLSEEDPEAGEMGIVGVYNGQIIRAANPVTRGRSAIDVRMRRS 606

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            ++  + ELF  M ++   P+ +TF+ ++ A
Sbjct: 607 QELYFILELFQKMVQQGVRPNVVTFSAILNA 637


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 2/304 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
            AS L   M+   + P+V  ++AL+ A+ + G L EA    ++M   S   PD++TYS L
Sbjct: 309 DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSL 367

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D  + +   M       + VTYNT+I G+ KAK+ +E    F  M + G 
Sbjct: 368 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG- 426

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              +  T  ++I  +  +   +  +  + +    GV  DI T +IL       G  +   
Sbjct: 427 LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETAL 486

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V +++Q+    P + TYNI+IE   KAG +E   + F  +  +G+KPN +TY +++S +
Sbjct: 487 VVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGF 546

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            + GL  + D++ R+++    + D+  +N +I A+ + GD     EL   M+    V D 
Sbjct: 547 CRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 606

Query: 312 ITFA 315
            T  
Sbjct: 607 STIG 610



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 152/325 (46%), Gaps = 2/325 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +  +A  L + M+  G +P +  Y  +V+   + G +D A S +  M+     +P V  Y
Sbjct: 201 RASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ-GKIEPGVVIY 259

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I +   +   +    +  EM   GI  + VTYN++I       ++ +     S M+E
Sbjct: 260 NTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 319

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
               +P++ T +++I A+   G + + EK Y+E     +  DI T + L   +      D
Sbjct: 320 RK-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 378

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           + + + + M  +  FP VVTYN +I+ F KA  +++  E F++M  RG+  N++TY +L+
Sbjct: 379 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             + +A        + +Q+ +  V+ D   ++ ++      G VE    +F  ++     
Sbjct: 439 HGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKME 498

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
           PD  T+  MI+     G  E   +L
Sbjct: 499 PDIYTYNIMIEGMCKAGKVEDGWDL 523



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 150/329 (45%), Gaps = 2/329 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF  M+     PS+  ++ L+SA  +    D   S    M+++     ++YTYSI
Sbjct: 63  DDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLG-ISHNLYTYSI 121

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  +  L   +LA+M  LG E   VT N++++G+    +  +  S    MVE  
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM- 180

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD FT N++I          +     +   + G + D+ T  I+     + G  D  
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            S++  M++    P VV YN +I+      ++      F +M ++G++PN +TY SL+  
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G       +L  +    +  +   F+ +I A+ + G + +  +L+  M +R   PD
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
             T++++I  +      + A+++   MI+
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMIS 389



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 154/336 (45%), Gaps = 6/336 (1%)

Query: 7   CKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           C++  Q SL   V   M+  G +P +    +L++ +     + +A S +  M  +   +P
Sbjct: 127 CRR-SQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG-YQP 184

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +T++ LI    + +R      ++  M   G +   VTY  +++G  K    +   S  
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLL 244

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E G   P +   N++I A  N  N+      + E +  G++ ++ T N L +    
Sbjct: 245 KKM-EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 303

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G +     ++  M +R   P VVT++ +I+ F K G + + E+ + +M  R + P+  T
Sbjct: 304 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 363

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL++ +     + +   +   + + D   +   +N +I  + +A  V++  ELF  M 
Sbjct: 364 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMS 423

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +R  V + +T+ T+I  +      + AQ +  +M++
Sbjct: 424 QRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVS 459



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 37/299 (12%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           LD+A +   DM   S   P +  +S L+ +  K ++FDL+  +  +M  LGI  +  TY+
Sbjct: 62  LDDAVNLFGDMVK-SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I+ + +  +     +  + M++                                    
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMK------------------------------------ 144

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
           +G + DI TLN L   +          S++  M +  + P   T+N +I    +     +
Sbjct: 145 LGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASE 204

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
                 +M  +G +P+ +TY  +V+   K G I    S+L+++E   +      +N II 
Sbjct: 205 AVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIID 264

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           A     +V     LF  M  +   P+ +T+ ++I+     G    A  L + MI  K N
Sbjct: 265 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 323


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 169/389 (43%), Gaps = 55/389 (14%)

Query: 5   GKCKQPEQAS---LLFEVMLSDGLKPSVDVY-----TALVSAYGQSGLLDEAFSTINDMK 56
           G CK  +  S   LL ++     +KP+V ++     T +++ +  SG   EA   + +M 
Sbjct: 223 GMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEML 282

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
                 PDV TY+ LI +  K  +F   E++  EM   GI  S +TY+++IDG+ K  + 
Sbjct: 283 ERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRL 342

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +  E  F  M  + GC PDI T N++I+ Y  +  ++   K  +E    G+ A+  T   
Sbjct: 343 DAAEHMFYLMA-TKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTT 401

Query: 177 LTKSYGRAG------------------------------------------MYDKM-RSV 193
           L   + + G                                          M+  M +S 
Sbjct: 402 LIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSK 461

Query: 194 MDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           MD      F    P V TYNI+I      G   + EE +++M HRG+ P++ITY S++  
Sbjct: 462 MDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHG 521

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K   + +   +   + +     +   F  +I+ Y +AG V+   ELF  M  R  V +
Sbjct: 522 LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVAN 581

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
            IT+ T+I  +  +G    A ++  +M+A
Sbjct: 582 AITYITLIHGFRKVGNINGALDIFQEMMA 610



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 147/320 (45%), Gaps = 17/320 (5%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ ML  G+ PS   Y++++  + +   LD A      M +   C PD+ T++ L
Sbjct: 309 EAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPDIITFNTL 367

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    +  R D   K+L EM+  G+  + +TY T+I G+ +       +     MV SG 
Sbjct: 368 IAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGV 427

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWY-------------NEFNLMGVKADIQTLNILT 178
           C P++ T N+++    ++G ++   + +             + FN  GV+ D+QT NIL 
Sbjct: 428 C-PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFN--GVEPDVQTYNILI 484

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                 G + +   + + M  R   P  +TYN VI    K   +++  + F  M  +   
Sbjct: 485 SGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFS 544

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN +T+ +L++ Y KAG +     +  ++    ++ +   +  +I  + + G++    ++
Sbjct: 545 PNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDI 604

Query: 299 FLTMKERHCVPDNITFATMI 318
           F  M      PD IT   M+
Sbjct: 605 FQEMMASGVYPDTITIRNML 624



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 131/284 (46%), Gaps = 13/284 (4%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   + A  +F +M + G  P +  +  L++ Y ++  +D+    +++M   +   
Sbjct: 335 GFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTE-AGLV 393

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            +  TY+ LI    +    +  + +L EM   G+  + VT NT++DG     K ++    
Sbjct: 394 ANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEM 453

Query: 123 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
           F AM +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  
Sbjct: 454 FKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 513

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T N +     +    D+   + D M  + F P VVT+  +I  + KAG ++   E F +M
Sbjct: 514 TYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 573

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
             RG+  N+ITY +L+  + K G I     I +++  S V  DT
Sbjct: 574 GRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDT 617



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 136/321 (42%), Gaps = 44/321 (13%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G  P+V  ++ L+        + EA    + M     CKP+V T++ L+    +  R   
Sbjct: 143 GFHPTVVTFSTLLHGLCVEDRISEALDLFHQM-----CKPNVVTFTTLMNGLCREGRVVE 197

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL---- 139
              +L  M   G++ + +TY TI+DG  K        +    M E     P++       
Sbjct: 198 AVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLER 257

Query: 140 -NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
              MI+ + +SG      +W          ++ Q L                  + + ++
Sbjct: 258 RTCMINGFCSSG------RW----------SEAQQL------------------LQEMLE 283

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           ++   P VVTYN +I  F K G   + EE + +M  RG+ P++ITY S++  + K   + 
Sbjct: 284 RKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLD 343

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             + +   +       D   FN +I+ Y +A  V+   +L   M E   V + IT+ T+I
Sbjct: 344 AAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLI 403

Query: 319 QAYNALGMTEAAQNLENKMIA 339
             +  +G   AAQ+L  +M++
Sbjct: 404 HGFCQVGDLNAAQDLLQEMVS 424



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 143/367 (38%), Gaps = 78/367 (21%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C++    +A  L + ML DGL+P+   Y  +V    + G    A + +  M+ VS
Sbjct: 185 LMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVS 244

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KP+V  + +  ++C                              +I+G+  + ++ E 
Sbjct: 245 HIKPNVVIWPLERRTC------------------------------MINGFCSSGRWSEA 274

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE------------------ 161
           +     M+E     PD+ T N++I+A+   G   + E+ Y+E                  
Sbjct: 275 QQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMID 334

Query: 162 --------------FNLMGVKA---DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
                         F LM  K    DI T N L   Y RA   D    ++  M +     
Sbjct: 335 GFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVA 394

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
             +TY  +I  F + G +   ++  ++M   G+ PN +T  +L+      G +     + 
Sbjct: 395 NTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMF 454

Query: 265 RQVENSDVILDT--PF---------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           + ++ S + +D   PF         +N +IS     G   +  EL+  M  R  VPD IT
Sbjct: 455 KAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 514

Query: 314 FATMIQA 320
           + ++I  
Sbjct: 515 YNSVIHG 521



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 110/263 (41%), Gaps = 14/263 (5%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + K+ +    L   M   GL  +   YT L+  + Q G L+ A   + +M S   C P+V
Sbjct: 373 RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVC-PNV 431

Query: 66  YTYSILIKS-CTKFHRFDLIE----------KILAEMSYLGIECSAVTYNTIIDGYGKAK 114
            T + L+   C      D +E           I A   + G+E    TYN +I G     
Sbjct: 432 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEG 491

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           KF E E  +  M   G   PD  T NS+I        +++  + ++         ++ T 
Sbjct: 492 KFLEAEELYEEMPHRG-IVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTF 550

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
             L   Y +AG  D    +   M +R      +TY  +I  F K G+I    + F++M  
Sbjct: 551 TTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMA 610

Query: 235 RGMKPNSITYCSLVSA-YSKAGL 256
            G+ P++IT  ++++  +SK  L
Sbjct: 611 SGVYPDTITIRNMLTGLWSKEEL 633



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 103/268 (38%), Gaps = 39/268 (14%)

Query: 109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
           G+ + K  E+    F  MV S    P +     ++      G ++ +   + +  +  V 
Sbjct: 52  GFHEIKGLEDAIDLFGDMVRSRPL-PSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVP 110

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-------------- 214
            +  +  IL K +          S    + K  F PTVVT++ ++               
Sbjct: 111 CNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDL 170

Query: 215 ----------TFG-------KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
                     TF        + G + +      +M   G++PN ITY ++V    K G  
Sbjct: 171 FHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDT 230

Query: 258 MKVDSILRQVENSD------VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PD 310
           +   ++LR++E         VI       C+I+ +  +G   +  +L   M ER  + PD
Sbjct: 231 VSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPD 290

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
            +T+  +I A+   G    A+ L ++M+
Sbjct: 291 VVTYNALINAFVKEGKFFEAEELYDEML 318


>gi|326487288|dbj|BAJ89628.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 461

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 149/309 (48%), Gaps = 2/309 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  L   M  DG+  +   Y  L+ AY ++G L++++  + +MK     + D   YS L+
Sbjct: 141 ADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWG-IRLDTAGYSTLV 199

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
           +       +     ++ EM  +G+E     YN +ID +GK  +  +    F  M    G 
Sbjct: 200 RLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKM-RGQGI 258

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PDI T N++I  +   GN+++  ++       G+  D +    +    G  G +D+++ 
Sbjct: 259 KPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINRLGEQGKWDELKE 318

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           + D M+ R F  +   Y ++++ +G+ GH    +E    +K   ++ +   +C L +AY+
Sbjct: 319 LFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLANAYA 378

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           + GL  +  S+L+ +E   +  +    N +I+A+  AG   +   +F  +K+    PD +
Sbjct: 379 QQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQAVFQHIKDSGMSPDVV 438

Query: 313 TFATMIQAY 321
           T+ T+++A+
Sbjct: 439 TYTTLMKAF 447



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 151/350 (43%), Gaps = 35/350 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L   M + G++PS   Y  L+ A  ++G   EA + + +M+ +   +PD   Y+ L++  
Sbjct: 74  LLADMQAAGMRPSAAAYARLIRALARAGRALEAEALLLEMRHLG-LRPDAAHYNALLEGL 132

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-------EME-------- 120
                  L +++L +M+  G+  +  TY  ++D Y +A + E       EM+        
Sbjct: 133 LARAHLRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDT 192

Query: 121 SSFSAMV----ESG---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           + +S +V    +SG               G   D+   N +I  +G  G +    K + +
Sbjct: 193 AGYSTLVRLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEK 252

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G+K DI+T N L + + R G   +    +  MQ+   +P    +  +I   G+ G 
Sbjct: 253 MRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINRLGEQGK 312

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            ++++E F KM++RG K +   Y  LV  Y + G        +  ++  ++ L    F  
Sbjct: 313 WDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCV 372

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           + +AY Q G  E+   +   M+     P+ +    +I A++  G    AQ
Sbjct: 373 LANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQ 422



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 134/289 (46%), Gaps = 6/289 (2%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           L  +   + DM++ +  +P    Y+ LI++  +  R    E +L EM +LG+   A  YN
Sbjct: 68  LARSLQLLADMQA-AGMRPSAAAYARLIRALARAGRALEAEALLLEMRHLGLRPDAAHYN 126

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY--NEF 162
            +++G   A+    +       +   G   +  T   ++ AY  +G +E  + W+   E 
Sbjct: 127 ALLEGL-LARAHLRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLE--DSWWVLGEM 183

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              G++ D    + L + Y  +GM+ K   ++  MQ+      V  YN +I+TFGK G +
Sbjct: 184 KRWGIRLDTAGYSTLVRLYRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQL 243

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
               + F+KM+ +G+KP+  T+ +L+  + + G + +    L  ++   +  D   F  I
Sbjct: 244 ADARKMFEKMRGQGIKPDIETWNALIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITI 303

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           I+  G+ G  +++ ELF  M+ R        +A ++  Y   G    AQ
Sbjct: 304 INRLGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQ 352



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 114/255 (44%), Gaps = 12/255 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ L   M   G++  V +Y  L+  +G+ G L +A      M+     KPD+ T++ 
Sbjct: 209 KKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKMRG-QGIKPDIETWNA 267

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV--- 127
           LI+   +        + LA M   G+      + TII+  G+  K++E++  F  M    
Sbjct: 268 LIRWHCRVGNMKRALRFLAAMQEEGMYPDPKIFITIINRLGEQGKWDELKELFDKMRNRG 327

Query: 128 --ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
             ESG  +        ++  YG  G+    ++         ++       +L  +Y + G
Sbjct: 328 FKESGAIYA------VLVDIYGQYGHFRDAQECVAALKAENLQLSPSIFCVLANAYAQQG 381

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           + ++  SV+  M+     P +V  N++I  F  AG   + +  F+ +K  GM P+ +TY 
Sbjct: 382 LCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQAVFQHIKDSGMSPDVVTYT 441

Query: 246 SLVSAYSKAGLIMKV 260
           +L+ A+ +     KV
Sbjct: 442 TLMKAFMRVKRYEKV 456



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 62/137 (45%)

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           MQ     P+   Y  +I    +AG   + E    +M+H G++P++  Y +L+        
Sbjct: 78  MQAAGMRPSAAAYARLIRALARAGRALEAEALLLEMRHLGLRPDAAHYNALLEGLLARAH 137

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           +   D +L Q+ +  V  +   +  ++ AY +AG +E    +   MK      D   ++T
Sbjct: 138 LRLADRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTAGYST 197

Query: 317 MIQAYNALGMTEAAQNL 333
           +++ Y   GM + A +L
Sbjct: 198 LVRLYRDSGMWKKATDL 214



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 75/172 (43%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G++        L ++  RAG   +  +++  M+     P    YN ++E      H+   
Sbjct: 82  GMRPSAAAYARLIRALARAGRALEAEALLLEMRHLGLRPDAAHYNALLEGLLARAHLRLA 141

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           +    +M   G+  N  TY  L+ AY++AG +     +L +++   + LDT  ++ ++  
Sbjct: 142 DRLLLQMADDGVARNRRTYMLLLDAYARAGRLEDSWWVLGEMKRWGIRLDTAGYSTLVRL 201

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           Y  +G  +K  +L + M+E     D   +  +I  +   G    A+ +  KM
Sbjct: 202 YRDSGMWKKATDLIMEMQEVGVELDVKIYNGLIDTFGKYGQLADARKMFEKM 253



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-DCK 62
           LG+  + ++   LF+ M + G K S  +Y  LV  YGQ G   +A   +  +K+ +    
Sbjct: 307 LGEQGKWDELKELFDKMRNRGFKESGAIYAVLVDIYGQYGHFRDAQECVAALKAENLQLS 366

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P ++   +L  +  +    +    +L  M   GIE + V  N +I+ +  A +  E ++ 
Sbjct: 367 PSIFC--VLANAYAQQGLCEQTVSVLQLMEAEGIEPNLVMLNLLINAFSTAGRHLEAQAV 424

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
           F  + +S G  PD+ T  +++ A+      EK+   Y
Sbjct: 425 FQHIKDS-GMSPDVVTYTTLMKAFMRVKRYEKVRLLY 460


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 1/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++P  A  L  VM ++G   SV  YT L+    +SG LD A + +  M   + C P
Sbjct: 20  LCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMAD-AGCAP 78

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TY+ LI    K  R     + +  M   G E   VTYN++I G   A + ++     
Sbjct: 79  NVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVL 138

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             ++   G  PD+ T N+ IS    +G ++K  +   E +  G+  D+ T   +     +
Sbjct: 139 QELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCK 198

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A   D    V   M +R   P  +TY+I+++   +A  ++ +EE  + M   G    S T
Sbjct: 199 ANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSAT 258

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+ A  +AG I        Q   +  +++    N  I A  ++G       + L M 
Sbjct: 259 YAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMI 318

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           E   +P+ +++  +I      G  + A  L  KM+
Sbjct: 319 ESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKML 353



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 159/376 (42%), Gaps = 42/376 (11%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +   A  L + M   G  P+V  YTAL+    ++    +A  T+  M   S C+
Sbjct: 54  GLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLR-SGCE 112

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAE-MSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           PD+ TY+ LI      +R D    +L E M   G     VTYNT I G  KA K ++   
Sbjct: 113 PDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLE 172

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               M + GG  PD+ T  S+IS    +  I+   + +      G   D  T +I+  + 
Sbjct: 173 MLEEM-DRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNL 231

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK--------------MEE 227
            RA   D +  V++ M K   +    TY  +I    +AG IE               ME 
Sbjct: 232 SRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEV 291

Query: 228 YFKK---------------------MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           Y                        M   G  PN ++Y  ++    K+G +     + R+
Sbjct: 292 YTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRK 351

Query: 267 VENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVPDNITFATMIQAYNAL 324
           + +S     D  FFN +IS + +AG + +  +L   MK ++ CVPD +T+ TMI   +  
Sbjct: 352 MLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKF 411

Query: 325 GMTEAAQNLENKMIAM 340
           G  + A+ L  +M A+
Sbjct: 412 GSLKQAKLLLEEMQAV 427



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 107/256 (41%), Gaps = 37/256 (14%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   Y+ LI    K  +     ++L  M+  G + S VTY T+IDG  K+   +  ++  
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ++ GC P++ T  ++I     +       +        G + D+ T N L      
Sbjct: 69  QKMADA-GCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCM 127

Query: 184 AGMYDKMRSVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           A   D    V+ + M +    P VVTYN  I    KAG ++K  E  ++M   G+ P+ +
Sbjct: 128 ANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVV 187

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+CS++S   KA  I                 D  F                  ++F  M
Sbjct: 188 TFCSIISGLCKANRI-----------------DDAF------------------QVFKGM 212

Query: 303 KERHCVPDNITFATMI 318
            ER CVPD++T++ M+
Sbjct: 213 LERGCVPDSLTYSIML 228



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 111/258 (43%), Gaps = 39/258 (15%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + E M   G+ P V  + +++S   ++  +D+AF     M     C PD  TYSI++ + 
Sbjct: 173 MLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLE-RGCVPDSLTYSIMLDNL 231

Query: 76  TKFHRFDLIEKILAEMSYLG-------------------------------IECSAV--- 101
           ++ +R D +E++L  M   G                               +E   V   
Sbjct: 232 SRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEV 291

Query: 102 -TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
            T+N  I    ++ KF   ++    M+ESG   P++ + N +I     SGN++   K   
Sbjct: 292 YTHNAFIGALCRSGKFPLAKNILLGMIESGSL-PNLLSYNFVIDGLCKSGNVDDAWKLSR 350

Query: 161 EFNLMGV-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQ-KRFFFPTVVTYNIVIETFGK 218
           +    G  K D+   N L   + +AG   + + ++  M+ K    P VVTYN +I+   K
Sbjct: 351 KMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSK 410

Query: 219 AGHIEKMEEYFKKMKHRG 236
            G +++ +   ++M+  G
Sbjct: 411 FGSLKQAKLLLEEMQAVG 428



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V+ G CK    + A  L   ML  G  KP V  +  L+S + ++G L +A   + +MK+ 
Sbjct: 332 VIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAK 391

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 95
           + C PDV TY+ +I   +KF      + +L EM  +G
Sbjct: 392 NICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 2/157 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E AS  +E  +  G    V  + A + A  +SG    A + +  M   S   P++ +Y+ 
Sbjct: 273 ESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIE-SGSLPNLLSYNF 331

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGI-ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           +I    K    D   K+  +M   G  +   + +NT+I G+ KA +  + +     M   
Sbjct: 332 VIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAK 391

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
             C PD+ T N+MI      G++++ +    E   +G
Sbjct: 392 NICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428


>gi|326522967|dbj|BAJ88529.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 149/328 (45%), Gaps = 40/328 (12%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++G+  Q   A  LF  M + G KP   VY +L+ A+     +S  L +A    + MK +
Sbjct: 131 VMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALVKALGYFDKMKGM 190

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P++ TY+IL+++C +      ++ +  ++    +     TYN +IDGYGK     E
Sbjct: 191 ERCQPNIVTYNILLRACARASDTKQVDILFKDLDESIVSPDIYTYNGVIDGYGKNGMITE 250

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           MES    M +S  C PD+ T N +I +YG     +KME+ +        +    T N + 
Sbjct: 251 MESVLVRM-KSKQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMI 309

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK----- 233
            +YG+A + +K  SV++ MQ+  F P  VT   +I  +     + K ++ F ++      
Sbjct: 310 TNYGKARLREKAESVIEKMQELGFKPNYVTQECLINMYAYCDCVSKAQQIFDELVSSQST 369

Query: 234 ------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
                                          +G+ P++ TY  L  AY++A   M V  +
Sbjct: 370 VPLSSLNAMLDAYCMNRLPMEADRLLDTAIEKGVVPSASTYKLLYRAYTRANDKMLVQKL 429

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGD 291
           L+++    ++ +  FF   + A+G + +
Sbjct: 430 LQRMNKQGIVPNKKFFLDALEAFGTSAN 457



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 145/314 (46%), Gaps = 11/314 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +Y+ L+S  G+ G +  A    + M++ S CKPD   Y+ LI +    H  D  + ++  
Sbjct: 124 IYSKLISVMGRKGQIRMAMWLFSQMRN-SGCKPDTSVYNSLIGA--HLHSRDKSKALVKA 180

Query: 91  MSYL----GIE-CSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + Y     G+E C    VTYN ++    +A   ++++  F  + ES    PDI+T N +I
Sbjct: 181 LGYFDKMKGMERCQPNIVTYNILLRACARASDTKQVDILFKDLDESI-VSPDIYTYNGVI 239

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             YG +G I +ME           + D+ T NIL  SYGR   +DKM  V   + +    
Sbjct: 240 DGYGKNGMITEMESVLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKER 299

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT  T+N +I  +GKA   EK E   +KM+  G KPN +T   L++ Y+    + K   I
Sbjct: 300 PTHPTFNSMITNYGKARLREKAESVIEKMQELGFKPNYVTQECLINMYAYCDCVSKAQQI 359

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             ++ +S   +     N ++ AY       +   L  T  E+  VP   T+  + +AY  
Sbjct: 360 FDELVSSQSTVPLSSLNAMLDAYCMNRLPMEADRLLDTAIEKGVVPSASTYKLLYRAYTR 419

Query: 324 LGMTEAAQNLENKM 337
                  Q L  +M
Sbjct: 420 ANDKMLVQKLLQRM 433



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 122/253 (48%), Gaps = 5/253 (1%)

Query: 2   VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           ++L  C +    +Q  +LF+ +    + P +  Y  ++  YG++G++ E  S +  MKS 
Sbjct: 202 ILLRACARASDTKQVDILFKDLDESIVSPDIYTYNGVIDGYGKNGMITEMESVLVRMKS- 260

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+PDV T++ILI S  +   FD +E++   +       +  T+N++I  YGKA+  E+
Sbjct: 261 KQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGKARLREK 320

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            ES    M E G   P+  T   +I+ Y     + K ++ ++E         + +LN + 
Sbjct: 321 AESVIEKMQELG-FKPNYVTQECLINMYAYCDCVSKAQQIFDELVSSQSTVPLSSLNAML 379

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y    +  +   ++D   ++   P+  TY ++   + +A     +++  ++M  +G+ 
Sbjct: 380 DAYCMNRLPMEADRLLDTAIEKGVVPSASTYKLLYRAYTRANDKMLVQKLLQRMNKQGIV 439

Query: 239 PNSITYCSLVSAY 251
           PN   +   + A+
Sbjct: 440 PNKKFFLDALEAF 452



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 6/242 (2%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNE 161
           Y+ +I   G+  +       FS M  SG C PD    NS+I A+ +S +  K + K    
Sbjct: 125 YSKLISVMGRKGQIRMAMWLFSQMRNSG-CKPDTSVYNSLIGAHLHSRDKSKALVKALGY 183

Query: 162 FNLMG----VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
           F+ M      + +I T NIL ++  RA    ++  +   + +    P + TYN VI+ +G
Sbjct: 184 FDKMKGMERCQPNIVTYNILLRACARASDTKQVDILFKDLDESIVSPDIYTYNGVIDGYG 243

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           K G I +ME    +MK +  +P+ IT+  L+ +Y +     K++ + + +  S      P
Sbjct: 244 KNGMITEMESVLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHP 303

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            FN +I+ YG+A   EK   +   M+E    P+ +T   +I  Y        AQ + +++
Sbjct: 304 TFNSMITNYGKARLREKAESVIEKMQELGFKPNYVTQECLINMYAYCDCVSKAQQIFDEL 363

Query: 338 IA 339
           ++
Sbjct: 364 VS 365



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 17/173 (9%)

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI-- 213
           ++WY         AD    + L    GR G       +   M+     P    YN +I  
Sbjct: 115 QRWY--------VADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGA 166

Query: 214 --ETFGKAGHIEKMEEYFKKMKHRGM---KPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
              +  K+  + K   YF KMK  GM   +PN +TY  L+ A ++A    +VD + + ++
Sbjct: 167 HLHSRDKSKALVKALGYFDKMK--GMERCQPNIVTYNILLRACARASDTKQVDILFKDLD 224

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            S V  D   +N +I  YG+ G + +M  + + MK + C PD ITF  +I +Y
Sbjct: 225 ESIVSPDIYTYNGVIDGYGKNGMITEMESVLVRMKSKQCRPDVITFNILIDSY 277


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 163/341 (47%), Gaps = 10/341 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  Q ++A+ +   M   G+ P V  YT L+    + G    A   +N M    + +
Sbjct: 147 GLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGE-E 205

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P   TY++L+    K        KIL  M   G +   VTYNT++ G     K +E    
Sbjct: 206 PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKL 265

Query: 123 FSAMVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F++M ++  C  P++FT N +I      G + K  K + +    G   ++ T N+L    
Sbjct: 266 FNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGC 325

Query: 182 GRAGMYDKMRSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +AG   K++  M+  ++     F P   TY+I+I+ F K   +   +  F +M+  G+ 
Sbjct: 326 LKAG---KIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLN 382

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P    Y +L+++  K G + +  S+ +++ N++   D   FN +I    +AGD + + EL
Sbjct: 383 PALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKEL 442

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            + M E    PD +TF+T+I   + LG  + A++   +M+A
Sbjct: 443 QMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVA 483



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 149/327 (45%), Gaps = 4/327 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ ML  G+  +V  Y+ LV    + G   EA + +N M       PDV TY+ LI   
Sbjct: 125 LFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAE-HGIHPDVVTYTGLIDGL 183

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R      +L  M   G E S VTYN ++ G  K     +       M+E G    D
Sbjct: 184 CKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK-KAD 242

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEF--NLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           + T N+++    + G +++  K +N    N   ++ ++ T N+L     + G   K   +
Sbjct: 243 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 302

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
              M K+     +VTYN+++    KAG I++  E +K++   G  PNS TY  L+  + K
Sbjct: 303 HRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCK 362

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
             ++     +  ++    +      +N ++++  + G +E+   LF  M   +C PD I+
Sbjct: 363 MRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIIS 422

Query: 314 FATMIQAYNALGMTEAAQNLENKMIAM 340
           F TMI      G  +  + L+ KM+ M
Sbjct: 423 FNTMIDGTLKAGDFQFVKELQMKMVEM 449



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 144/302 (47%), Gaps = 8/302 (2%)

Query: 41  QSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 98
           ++G + EA   I +M  KSVS   PD+ +Y+ LI    K  +      +L EM   G   
Sbjct: 10  RNGGVFEAMGLIREMGRKSVS---PDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFP 66

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           ++VT  T++DG  K  + +E      AM +  G   D+    ++IS + N+GN+++ ++ 
Sbjct: 67  NSVTCTTLMDGLCKDGRMDEAMELLEAM-KKKGFDADVVLYGTLISGFCNNGNLDRGKEL 125

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
           ++E    G+ A++ T + L     R G + +  +V++ M +    P VVTY  +I+   K
Sbjct: 126 FDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK 185

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
            G      +    M  +G +P+++TY  L+S   K GL++    ILR +       D   
Sbjct: 186 DGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVT 245

Query: 279 FNCIISAYGQAGDVEKMGELFLTM-KERHCVPDNI-TFATMIQAYNALGMTEAAQNLENK 336
           +N ++      G V++  +LF +M    +C+  N+ TF  +I      G    A  +  K
Sbjct: 246 YNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRK 305

Query: 337 MI 338
           M+
Sbjct: 306 MV 307



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 140/304 (46%), Gaps = 2/304 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC-KPDVYTYSILIKS 74
           +  +M+  G K  V  Y  L+      G +DEA    N M    +C +P+V+T+++LI  
Sbjct: 230 ILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGG 289

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             K  R     KI  +M   G   + VTYN ++ G  KA K +E    +  +++ G   P
Sbjct: 290 LCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFV-P 348

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           + FT + +I  +     +   +  + E    G+   +   N L  S  + G  ++ +S+ 
Sbjct: 349 NSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLF 408

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             M      P ++++N +I+   KAG  + ++E   KM   G++P+++T+ +L++  SK 
Sbjct: 409 QEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKL 468

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G + +  S L ++  S    D   ++ ++      GD  ++  L   M  +  V D    
Sbjct: 469 GELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIV 528

Query: 315 ATMI 318
           +T++
Sbjct: 529 STIL 532



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 76/164 (46%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           +NI+ K   R G   +   ++  M ++   P +V+YN +I    KA  +++      +M+
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G  PNS+T  +L+    K G + +   +L  ++      D   +  +IS +   G+++
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +  ELF  M  +    + +T++ ++     LG  + A  + N M
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAM 164



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/204 (18%), Positives = 83/204 (40%)

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
           +N ++     +G + +      E     V  DI + N L     +A    +   ++  M+
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
               FP  VT   +++   K G +++  E  + MK +G   + + Y +L+S +   G + 
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +   +  ++    +  +   ++C++    + G  ++   +   M E    PD +T+  +I
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 180

Query: 319 QAYNALGMTEAAQNLENKMIAMKE 342
                 G    A +L N M+   E
Sbjct: 181 DGLCKDGRATHAMDLLNLMVEKGE 204


>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
 gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
          Length = 558

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 162/341 (47%), Gaps = 20/341 (5%)

Query: 15  LLFEVMLSDGLKPSV----------------DVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           L+ E+ +S  LK +V                D+Y  ++  + +   +D+A     +M+  
Sbjct: 123 LIREITISGSLKHAVHVFRWMKIQENYCARNDIYGMMIRLHARHNQVDQARGLFFEMQEW 182

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             CKPD  TY+ LI +  +  ++     I+ +M    I  S  TYN +I+  G A  +++
Sbjct: 183 R-CKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKK 241

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  M E+ G  PD+ T N ++SA+ N     K   ++       V  D  T+NI+ 
Sbjct: 242 ALELCKKMTEN-GVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVI 300

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFF--PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
               +  +Y +   + + M++R     P VVTY  ++ ++   G  E  +  F  M   G
Sbjct: 301 HCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEG 360

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           ++PN ++Y +L+ AY+  G+  +     + ++ +    D   +  +++AYG++   EK  
Sbjct: 361 VRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAR 420

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           E+F  M++  C P+ +++  +I AY + GM + A +L ++M
Sbjct: 421 EVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEM 461



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 164/365 (44%), Gaps = 37/365 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q +QA  LF  M     KP  D Y +L+ A+ ++G    A + ++DM+  +   P   TY
Sbjct: 168 QVDQARGLFFEMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAA-IPPSRTTY 226

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FEEMES 121
           + +I +C     +    ++  +M+  G+    +T+N ++  +    +       FE M+S
Sbjct: 227 NNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKS 286

Query: 122 S----------------------------FSAMVESGG-CHPDIFTLNSMISAYGNSGNI 152
           S                            F++M E    C PD+ T  S++ +Y   G  
Sbjct: 287 SKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQA 346

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           E  +  ++     GV+ +I + N L  +Y   GM+ +       +++  F P +V+Y  +
Sbjct: 347 ENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSL 406

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           +  +G++   EK  E F +M+    KPN ++Y +L+ AY  AG++ +  S+L ++E   +
Sbjct: 407 LNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGI 466

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
             D    + +++A G+     K+G +    K R    + + + + I +Y +LG  + A  
Sbjct: 467 QPDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALE 526

Query: 333 LENKM 337
           L   M
Sbjct: 527 LYTSM 531



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 158/327 (48%), Gaps = 12/327 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G     ++A  L + M  +G+ P +  +  ++SA+       +A +    MKS S   PD
Sbjct: 234 GAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKS-SKVAPD 292

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEMESS 122
             T +I+I    K   +    ++   M      C    VTY +I+  Y    + E  ++ 
Sbjct: 293 TCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAV 352

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLM---GVKADIQTLNILT 178
           F  MV  G   P+I + N+++ AY + G + E +E     F L+   G K DI +   L 
Sbjct: 353 FDMMVAEG-VRPNIVSYNALLGAYASHGMHTEALET----FKLLKQNGFKPDIVSYTSLL 407

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YGR+ + +K R V + M+K    P  V+YN +I+ +G AG +++      +M+  G++
Sbjct: 408 NAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQ 467

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ I+  +L++A  +     K+  IL   ++  + L+T  +N  I +Y   GD +K  EL
Sbjct: 468 PDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALEL 527

Query: 299 FLTMKERHCVPDNITFATMIQAYNALG 325
           + +M+  +  PD +T+  +I     LG
Sbjct: 528 YTSMRTGNVKPDAVTYNILISGSCKLG 554



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 2/287 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYT 67
           Q  +A   FE+M S  + P       ++    +  L  EA    N M+     C PDV T
Sbjct: 273 QYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVT 332

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ ++ S +   + +  + +   M   G+  + V+YN ++  Y       E   +F  ++
Sbjct: 333 YTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFK-LL 391

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           +  G  PDI +  S+++AYG S   EK  + +NE      K +  + N L  +YG AGM 
Sbjct: 392 KQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGML 451

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            +  S++  M++    P V++ + ++   G+     K+       K RG++ N++ Y S 
Sbjct: 452 KEAISLLHEMEQDGIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSG 511

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           + +Y   G   K   +   +   +V  D   +N +IS   + G   K
Sbjct: 512 IGSYLSLGDYKKALELYTSMRTGNVKPDAVTYNILISGSCKLGSFRK 558



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 8/221 (3%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C Q E    +F++M+++G++P++  Y AL+ AY   G+  EA  T   +K  +  KPD+ 
Sbjct: 343 CGQAENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQ-NGFKPDIV 401

Query: 67  TYSILIKSCTKFHRFDLIEK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +Y+ L+ +   + R  L EK   +  EM     + + V+YN +ID YG A   +E  S  
Sbjct: 402 SYTSLLNA---YGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLL 458

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E  G  PD+ +++++++A G      K+          G++ +    N    SY  
Sbjct: 459 HEM-EQDGIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLS 517

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G Y K   +   M+     P  VTYNI+I    K G   K
Sbjct: 518 LGDYKKALELYTSMRTGNVKPDAVTYNILISGSCKLGSFRK 558



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 4/207 (1%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           DI+ +  MI  +     +++    + E      K D  T N L  ++ RAG +    ++M
Sbjct: 154 DIYGM--MIRLHARHNQVDQARGLFFEMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIM 211

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D MQ+    P+  TYN VI   G AG+ +K  E  KKM   G+ P+ IT+  ++SA+   
Sbjct: 212 DDMQRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNG 271

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNI 312
               K  +    +++S V  DT   N +I    +     +  ELF +M+ER   C PD +
Sbjct: 272 AQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVV 331

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           T+ +++ +Y+  G  E  + + + M+A
Sbjct: 332 TYTSIMYSYSVCGQAENCKAVFDMMVA 358



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 8/153 (5%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+   PE+A  +F  M  +  KP+   Y AL+ AYG +G+L EA S +++M+     +PD
Sbjct: 411 GRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQ-DGIQPD 469

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMES 121
           V + S L+ +C +  +   I  ILA     GI+ + V YN+ I  Y   G  KK  E+ +
Sbjct: 470 VISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYT 529

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           S    + +G   PD  T N +IS     G+  K
Sbjct: 530 S----MRTGNVKPDAVTYNILISGSCKLGSFRK 558


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 144/320 (45%), Gaps = 17/320 (5%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L+  ML  G+ P+   Y +++  + +   LD A      M +   C PDV T+SIL
Sbjct: 336 EAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLM-ATKGCSPDVITFSIL 394

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D   K+L EMS  G+  + +TY T+I G+ +             M+ SG 
Sbjct: 395 IDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGV 454

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWY-------------NEFNLMGVKADIQTLNILT 178
           C P++ T N+++    N+G ++   + +             + FN   V+ D+QT NIL 
Sbjct: 455 C-PNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFN--DVEPDVQTYNILI 511

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                 G + +   + + M  R   P  +TYN VI+   K   +++  + F  M  +G  
Sbjct: 512 CGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFS 571

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ +T+ +L++ Y K G +     +  ++    ++ +   +  +I  + Q G++    ++
Sbjct: 572 PDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDI 631

Query: 299 FLTMKERHCVPDNITFATMI 318
           F  M      PD IT   M+
Sbjct: 632 FQEMISSGVYPDTITIRNML 651



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 163/382 (42%), Gaps = 48/382 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  LF  M   G+ P++  Y  +++ +  SG   EA   + +M       P
Sbjct: 258 LWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFE-RKMSP 316

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T+S+LI +  K  +F   E++  EM   GI  + +TYN++IDG+ K  + +  E  F
Sbjct: 317 DVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMF 376

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  + GC PD+ T + +I  Y  +  ++   K  +E +  G+ A+  T   L   + +
Sbjct: 377 YLMA-TKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQ 435

Query: 184 AG------------------------------------------MYDKM-RSVMDFMQKR 200
            G                                          M+  M +S MD     
Sbjct: 436 LGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASH 495

Query: 201 FFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
            F    P V TYNI+I      G   + EE +++M HRG+ P++ITY S++    K   +
Sbjct: 496 PFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRL 555

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            +   +   + +     D   F  +I+ Y + G V    E+F  M  R  V + IT+ T+
Sbjct: 556 DEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTL 615

Query: 318 IQAYNALGMTEAAQNLENKMIA 339
           I  +  +G    A ++  +MI+
Sbjct: 616 IHGFCQVGNINGALDIFQEMIS 637



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 144/305 (47%), Gaps = 3/305 (0%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C++    +A  L + M+ DGL+P+   Y  +V    + G    A + +  M+ VS
Sbjct: 183 LMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVS 242

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KP+V  YS +I    K  R    + + +EM   GI  +  TYN +I+G+  + ++ E 
Sbjct: 243 RIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEA 302

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +     M E     PD+ T + +I+A    G   + E+ YNE    G+  +  T N +  
Sbjct: 303 QRLLREMFER-KMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMID 361

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + +    D    +   M  +   P V+T++I+I+ +  A  ++   +   +M  RG+  
Sbjct: 362 GFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVA 421

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N+ITY +L+  + + G +     +L+++ +S V  +    N ++      G ++   E+F
Sbjct: 422 NTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMF 481

Query: 300 LTMKE 304
             M++
Sbjct: 482 KVMQK 486



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 141/316 (44%), Gaps = 5/316 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G  PS+  ++ L+        + EA    + +     CKP+V  ++ L+    +  R   
Sbjct: 141 GFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI-----CKPNVIAFTTLMNGLCREGRVVE 195

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +L  M   G++ + +TY TI+DG  K        +    M E     P++   +++I
Sbjct: 196 AVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAII 255

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 G     +  ++E    G+  ++ T N +   +  +G + + + ++  M +R   
Sbjct: 256 DGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMS 315

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVT++++I    K G   + EE + +M  RG+ PN+ITY S++  +SK   +   + +
Sbjct: 316 PDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERM 375

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              +       D   F+ +I  Y  A  V+   +L   M  R  V + IT+ T+I  +  
Sbjct: 376 FYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQ 435

Query: 324 LGMTEAAQNLENKMIA 339
           LG   AA +L  +MI+
Sbjct: 436 LGNLNAALDLLQEMIS 451



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 139/297 (46%), Gaps = 5/297 (1%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLI 84
           KP+V  +T L++   + G + EA + ++ M  V D  +P+  TY  ++    K       
Sbjct: 174 KPNVIAFTTLMNGLCREGRVVEAVALLDRM--VEDGLQPNQITYGTIVDGMCKMGDTVSA 231

Query: 85  EKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             +L +M  +  I+ + V Y+ IIDG  K  +  + ++ FS M E G   P++FT N MI
Sbjct: 232 LNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKG-ISPNLFTYNCMI 290

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           + + +SG   + ++   E     +  D+ T ++L  +  + G + +   + + M  R   
Sbjct: 291 NGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGII 350

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P  +TYN +I+ F K   ++  E  F  M  +G  P+ IT+  L+  Y  A  +     +
Sbjct: 351 PNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKL 410

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           L ++    ++ +T  +  +I  + Q G++    +L   M      P+ +T  T++  
Sbjct: 411 LHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDG 467



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 123/274 (44%), Gaps = 12/274 (4%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++Y+++ILIK      +         +++ LG   S VT++T++ G     +  E    F
Sbjct: 110 NIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFF 169

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             +     C P++    ++++     G + +     +     G++ +  T   +    G 
Sbjct: 170 HQI-----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD--GM 222

Query: 184 AGMYDKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
             M D + S ++ ++K        P VV Y+ +I+   K G     +  F +M+ +G+ P
Sbjct: 223 CKMGDTV-SALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISP 281

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N  TY  +++ +  +G   +   +LR++    +  D   F+ +I+A  + G   +  EL+
Sbjct: 282 NLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELY 341

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             M  R  +P+ IT+ +MI  ++     +AA+ +
Sbjct: 342 NEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERM 375



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 109/261 (41%), Gaps = 14/261 (5%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+ +    L   M   GL  +   YT L+  + Q G L+ A   + +M S   C P+V T
Sbjct: 402 KRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVC-PNVVT 460

Query: 68  YSILIKS-CTKFHRFDLIE--KIL--------AEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            + L+   C      D +E  K++        A   +  +E    TYN +I G     KF
Sbjct: 461 CNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKF 520

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
            E E  +  M   G   PD  T NS+I        +++  + ++     G   D+ T   
Sbjct: 521 SEAEELYEEMPHRG-LVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTT 579

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   Y + G       V   M +R      +TY  +I  F + G+I    + F++M   G
Sbjct: 580 LINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSG 639

Query: 237 MKPNSITYCSLVSA-YSKAGL 256
           + P++IT  ++++  +SK  L
Sbjct: 640 VYPDTITIRNMLTGLWSKEEL 660



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/277 (19%), Positives = 117/277 (42%), Gaps = 6/277 (2%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V  +  L+    +  R D++  +  +M    I C+  ++  +I  +    K     S+
Sbjct: 74  PCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALST 133

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  + +  G HP + T ++++        + +   ++++      K ++     L     
Sbjct: 134 FGKITKL-GFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI----CKPNVIAFTTLMNGLC 188

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNS 241
           R G   +  +++D M +    P  +TY  +++   K G         +KM+    +KPN 
Sbjct: 189 REGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNV 248

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           + Y +++    K G      ++  +++   +  +   +NC+I+ +  +G   +   L   
Sbjct: 249 VIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLRE 308

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           M ER   PD +TF+ +I A    G    A+ L N+M+
Sbjct: 309 MFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEML 345


>gi|356565780|ref|XP_003551115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 622

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 148/311 (47%), Gaps = 1/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  + + M   GLKPS   Y  L+  YG +G  DE+   ++ M    + KP++ T ++
Sbjct: 217 EDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESIKLLDLMSIEGNVKPNLKTCNM 276

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI++  K         ++ +M+  G++   V++NT+   Y +  K  ++E+    M    
Sbjct: 277 LIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVAISYAQNGKTVQVEAMILEM-RRN 335

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+  T   +IS Y   G + +  ++      +G++ ++  LN L   +      D +
Sbjct: 336 GLKPNDRTCTIIISGYCREGKVREALRFVYRIKDLGLQPNLIILNSLVNGFVDTMDRDGV 395

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V++ M++ +  P V+TY+ ++  + +AG +EK +E +  M   G+KP+   Y  L   
Sbjct: 396 NEVLNLMEEFYIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDGHAYSILAKG 455

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y +A  + K + +L  +  S V  +   F  ++S +   G ++    +F  M E    P+
Sbjct: 456 YVRAQEMEKAEELLTVMTKSGVQPNVVIFTTVMSGWCSVGRMDNAMRVFDKMGEFGVSPN 515

Query: 311 NITFATMIQAY 321
             TF T+I  Y
Sbjct: 516 LKTFETLIWGY 526



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 166/339 (48%), Gaps = 13/339 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +L K  +P++A ++F+ ++  G +PS+  YT L++A           S ++ ++    
Sbjct: 137 MNILIKSGKPQEAIVIFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEE-KQ 195

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KPD   ++ L+ +  +F   +  +K++ +M   G++ SA TYNT+I GYG A K +E  
Sbjct: 196 MKPDSRFFNALVNAFAEFGNIEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESI 255

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GVKADIQTL 174
                M   G   P++ T N +I A      + KME     +N++      G++ D+ + 
Sbjct: 256 KLLDLMSIEGNVKPNLKTCNMLIRA------LCKMEHTSEAWNVVYKMTTSGMQPDVVSF 309

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N +  SY + G   ++ +++  M++    P   T  I+I  + + G + +   +  ++K 
Sbjct: 310 NTVAISYAQNGKTVQVEAMILEMRRNGLKPNDRTCTIIISGYCREGKVREALRFVYRIKD 369

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G++PN I   SLV+ +        V+ +L  +E   +  D   ++ I++A+ QAG +EK
Sbjct: 370 LGLQPNLIILNSLVNGFVDTMDRDGVNEVLNLMEEFYIRPDVITYSTIMNAWSQAGFLEK 429

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             E++  M +    PD   ++ + + Y      E A+ L
Sbjct: 430 CKEIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEEL 468



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 138/278 (49%), Gaps = 2/278 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +P + TY+ L+ + T    F  I  I++ +    ++  +  +N +++ + +    E+ + 
Sbjct: 162 QPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSRFFNALVNAFAEFGNIEDAKK 221

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKS 180
               M ESG   P   T N++I  YG +G  ++  K  +  ++ G VK +++T N+L ++
Sbjct: 222 VVQKMKESG-LKPSACTYNTLIKGYGIAGKPDESIKLLDLMSIEGNVKPNLKTCNMLIRA 280

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             +     +  +V+  M      P VV++N V  ++ + G   ++E    +M+  G+KPN
Sbjct: 281 LCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVAISYAQNGKTVQVEAMILEMRRNGLKPN 340

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             T   ++S Y + G + +    + ++++  +  +    N +++ +    D + + E+  
Sbjct: 341 DRTCTIIISGYCREGKVREALRFVYRIKDLGLQPNLIILNSLVNGFVDTMDRDGVNEVLN 400

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            M+E +  PD IT++T++ A++  G  E  + + N M+
Sbjct: 401 LMEEFYIRPDVITYSTIMNAWSQAGFLEKCKEIYNNML 438



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 143/306 (46%), Gaps = 6/306 (1%)

Query: 1   MVMLGKCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           M++   CK  E  S  + V   M + G++P V  +  +  +Y Q+G   +  + I +M+ 
Sbjct: 276 MLIRALCKM-EHTSEAWNVVYKMTTSGMQPDVVSFNTVAISYAQNGKTVQVEAMILEMRR 334

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            +  KP+  T +I+I    +  +     + +  +  LG++ + +  N++++G+      +
Sbjct: 335 -NGLKPNDRTCTIIISGYCREGKVREALRFVYRIKDLGLQPNLIILNSLVNGFVDTMDRD 393

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
            +    + M E     PD+ T +++++A+  +G +EK ++ YN     GVK D    +IL
Sbjct: 394 GVNEVLNLM-EEFYIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDGHAYSIL 452

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            K Y RA   +K   ++  M K    P VV +  V+  +   G ++     F KM   G+
Sbjct: 453 AKGYVRAQEMEKAEELLTVMTKSGVQPNVVIFTTVMSGWCSVGRMDNAMRVFDKMGEFGV 512

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            PN  T+ +L+  Y++A    K + +L+ +E   V         +  A+  AG  E    
Sbjct: 513 SPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAWCFAGLKEGAKT 572

Query: 298 LFLTMK 303
           L +T+K
Sbjct: 573 LLITVK 578



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 119/269 (44%), Gaps = 5/269 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  Q E  +++ E M  +GLKP+    T ++S Y + G + EA   +  +K +   +P+
Sbjct: 320 GKTVQVE--AMILE-MRRNGLKPNDRTCTIIISGYCREGKVREALRFVYRIKDLG-LQPN 375

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           +   + L+         D + ++L  M    I    +TY+TI++ + +A   E+ +  ++
Sbjct: 376 LIILNSLVNGFVDTMDRDGVNEVLNLMEEFYIRPDVITYSTIMNAWSQAGFLEKCKEIYN 435

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M++SG   PD    + +   Y  +  +EK E+        GV+ ++     +   +   
Sbjct: 436 NMLKSG-VKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKSGVQPNVVIFTTVMSGWCSV 494

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D    V D M +    P + T+  +I  + +A    K E   + M+   ++P   T 
Sbjct: 495 GRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTI 554

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVI 273
             +  A+  AGL     ++L  V+   +I
Sbjct: 555 LLVAEAWCFAGLKEGAKTLLITVKTEKMI 583



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 82/185 (44%), Gaps = 10/185 (5%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G +  + T   L  +      +  + S++  ++++   P    +N ++  F + G+IE  
Sbjct: 160 GHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSRFFNALVNAFAEFGNIEDA 219

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE----NSDVILDTPFFNC 281
           ++  +KMK  G+KP++ TY +L+  Y  AG   K D  ++ ++      +V  +    N 
Sbjct: 220 KKVVQKMKESGLKPSACTYNTLIKGYGIAG---KPDESIKLLDLMSIEGNVKPNLKTCNM 276

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +I A  +     +   +   M      PD ++F T+  +Y   G T     +E  ++ M+
Sbjct: 277 LIRALCKMEHTSEAWNVVYKMTTSGMQPDVVSFNTVAISYAQNGKT---VQVEAMILEMR 333

Query: 342 ENSGK 346
            N  K
Sbjct: 334 RNGLK 338


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 160/353 (45%), Gaps = 41/353 (11%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--K 62
           G  +  E  +L  E  L+  +KP    Y AL+  Y + G L  A   +++M   SDC   
Sbjct: 282 GAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEM---SDCGVA 338

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT-------------------- 102
           PD  TYS+L+ + T+  R++    +L EM   G++ S+                      
Sbjct: 339 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAV 398

Query: 103 ---------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
                          YN +ID +GK         +F+ M E G   PD+ T N++I A+ 
Sbjct: 399 LREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEG-IEPDVVTWNTLIDAHR 457

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G  ++  + + E           T NI+    G    +  + +++  M+++   P ++
Sbjct: 458 KGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNII 517

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  +++ +G++G  ++  E  + MK  G+KP+   Y +LV+AY++ GL     ++++ +
Sbjct: 518 TYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM 577

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
               +   T   N +++A+G+   V +   +   MKE    PD IT+ T+++A
Sbjct: 578 RADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKA 630



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 153/335 (45%), Gaps = 1/335 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            +   P+ A  L     + GL P  +  TAL+SA G +G + EA +   +     + KP 
Sbjct: 246 ARAALPDAALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPR 305

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+ L+K   K       E++L EMS  G+     TY+ ++D Y +A ++E       
Sbjct: 306 TRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLK 365

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+ G  P  +  + +++ + + G+ +K      E +  GV+ D    N++  ++G+ 
Sbjct: 366 EM-EADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKY 424

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
                     + M++    P VVT+N +I+   K G  ++  E F++M+     P + TY
Sbjct: 425 NCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTY 484

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +++   +    + V+++L +++   ++ +   +  ++  YG++G  ++  E    MK 
Sbjct: 485 NIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKA 544

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
               P    +  ++ AY   G+ + A N+   M A
Sbjct: 545 DGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRA 579



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 155/324 (47%), Gaps = 10/324 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M + S  +PD + Y++
Sbjct: 358 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHA-SGVQPDRHFYNV 416

Query: 71  LIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +I +  K+    H  D   ++  E    GIE   VT+NT+ID + K  + +     F  M
Sbjct: 417 MIDTFGKYNCLGHAMDAFNRMREE----GIEPDVVTWNTLIDAHRKGGRHDRAMELFEEM 472

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            ES  C P   T N MI+  G       +E   +E    G+  +I T   L   YGR+G 
Sbjct: 473 RESN-CPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGR 531

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           + +    ++ M+     P+   Y+ ++  + + G  +      K M+  G++ +++   S
Sbjct: 532 FKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNS 591

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++A+ +   +++  S+L+ ++ +D+  D   +  ++ A  +    +K+  ++  M    
Sbjct: 592 LMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSG 651

Query: 307 CVPDNITFATMIQAYNALGMTEAA 330
           C PD    A +  A   +  T+ A
Sbjct: 652 CAPDRKARAMLRSALRYMKYTKVA 675



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 136/320 (42%), Gaps = 43/320 (13%)

Query: 63  PDVYTYSILIKSCTKFHRFD---LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           PD+ +YS L+ S           ++E++L ++    +E  A  ++ +I  + +A    + 
Sbjct: 195 PDLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSDLISAFARAA-LPDA 253

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILT 178
                A  ++ G  P    + ++ISA G +G + + E  + EF L G +K   +  N L 
Sbjct: 254 ALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALL 313

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           K Y + G       V+D M      P   TY+++++ + +AG  E      K+M+  G+K
Sbjct: 314 KGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVK 373

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ---------- 288
           P+S  +  +++ +   G   K  ++LR++  S V  D  F+N +I  +G+          
Sbjct: 374 PSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDA 433

Query: 289 -------------------------AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
                                     G  ++  ELF  M+E +C P   T+  MI   N 
Sbjct: 434 FNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMI---NL 490

Query: 324 LGMTEAAQNLENKMIAMKEN 343
           LG  E    +E  +  MKE 
Sbjct: 491 LGEQERWVGVETMLSEMKEQ 510


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 148/337 (43%), Gaps = 6/337 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  L E ML  G+  +   Y+ALV    +   LDEA + +    +     PD+ TYS 
Sbjct: 201 DDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYST 260

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    K  R      I  EMS      +A+TYN++I GY +A   +E       MV+  
Sbjct: 261 VIDGLCKAGRLRDAVDIFEEMS---CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDN 317

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C PD+ T  +++SA+   G ++   + + +     +  D+ T   L       G  +  
Sbjct: 318 -CAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDA 376

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ + +R   PT+ TYN V++ + K+  + K EE     + RG  PN++TY  LV+ 
Sbjct: 377 LELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAG 436

Query: 251 YSKAGLIMKVDSILRQV--ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             +AG   +    L Q+  E          +  I+ A  + G  +   + +  M +R  V
Sbjct: 437 CCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYV 496

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           P   TFAT++ A       + A  L  +MI      G
Sbjct: 497 PAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPG 533



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 139/310 (44%), Gaps = 4/310 (1%)

Query: 21  LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80
           ++D   P    YT LV    ++G L +A   + +M S     PD  T +++++S     R
Sbjct: 141 MNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHV-PDNTTLTVVVQSLCLGDR 199

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            D   +++ EM + G+  +A+TY+ ++DG  K ++ +E  +     V   G  PDI T +
Sbjct: 200 VDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYS 259

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           ++I     +G +      + E   M       T N L   Y RAG  D+   ++  M   
Sbjct: 260 TVIDGLCKAGRLRDAVDIFEE---MSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDD 316

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P V+TY  ++  F K G ++   E F++M    + P+ +T+ SLV      G +   
Sbjct: 317 NCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDA 376

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +L ++           +NC++  Y ++  V K  EL    + R  VP+ +T+  ++  
Sbjct: 377 LELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAG 436

Query: 321 YNALGMTEAA 330
               G T+ A
Sbjct: 437 CCRAGRTDQA 446



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 9/301 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK  +   A  +FE M      P+   Y +L+  Y ++G +DEA   +  M    
Sbjct: 261 VIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVD-D 316

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +C PDV TY+ L+ +  K  R D   ++  +M    +    VT+ +++DG     + E+ 
Sbjct: 317 NCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDA 376

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 +   G C P I+T N ++  Y  S  + K E+   +F   G   +  T NIL  
Sbjct: 377 LELLEEITRRG-CPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVA 435

Query: 180 SYGRAGMYDKMRSVMDFMQKRF-FFPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              RAG  D+    +D +       PT V  Y I+++   + G  +   +++++M  RG 
Sbjct: 436 GCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGY 495

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P + T+ ++V A  KA    +   +L ++            + ++SAY +AG ++K  E
Sbjct: 496 VPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADE 555

Query: 298 L 298
           L
Sbjct: 556 L 556



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 124/263 (47%), Gaps = 10/263 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   M+ D   P V  YT L+SA+ + G LD+A+     M + +   PDV T++ 
Sbjct: 304 DEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVA-NKLSPDVVTFTS 362

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA---KKFEEMESSFSAMV 127
           L+       R +   ++L E++  G   +  TYN ++DGY K+   +K EE+ + F    
Sbjct: 363 LVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADF---- 418

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG--VKADIQTLNILTKSYGRAG 185
            S G  P+  T N +++    +G  ++  ++ ++ N  G      +    I+  +  R G
Sbjct: 419 RSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDG 478

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D      + M +R + P   T+  V+    KA   ++  E  ++M   G  P   T  
Sbjct: 479 RTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCD 538

Query: 246 SLVSAYSKAGLIMKVDSILRQVE 268
           ++VSAY +AG+I K D +  ++ 
Sbjct: 539 AVVSAYCRAGMIQKADELASELR 561



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK  Q  +A  L     S G  P+   Y  LV+   ++G  D+A   ++ + S  
Sbjct: 398 VVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG 457

Query: 60  -DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C   V  Y+I++ +  +  R D   +   EM   G   +A T+ T++    KA + ++
Sbjct: 458 GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQ 517

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
                  M++ G   P   T ++++SAY  +G I+K ++  +E  L
Sbjct: 518 AHELLEEMIKYGH-TPGPGTCDAVVSAYCRAGMIQKADELASELRL 562



 Score = 41.6 bits (96), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 1/131 (0%)

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  +I    KA  +++       MK RGM P ++ +  ++    +AG +     + RQ+
Sbjct: 82  TYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQM 141

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
            ++    D   +  ++    +AG +    ++   M     VPDN T   ++Q+       
Sbjct: 142 NDAHPP-DFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRV 200

Query: 328 EAAQNLENKMI 338
           + A+ L  +M+
Sbjct: 201 DDARELVEEML 211


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 161/338 (47%), Gaps = 3/338 (0%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK  +P+ A  L   M    ++  V +Y  ++    +   +D+AF   N M++  
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMET-K 279

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KPDV+TY+ LI     + R+    ++L++M    I    V +N +ID + K  K  E 
Sbjct: 280 GIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEA 339

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E  +  MV+S  C PD+   N++I  +     +E+  + + E +  G+  +  T   L  
Sbjct: 340 EKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIH 399

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + +A   D  + V   M      P ++TYNI+++     G++E     F+ M+ R MK 
Sbjct: 400 GFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKL 459

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +TY +++ A  KAG +     +   +    V  +   +  ++S + + G  E+   LF
Sbjct: 460 DIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALF 519

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + MKE   +P++ T+ T+I+A    G   A+  L  +M
Sbjct: 520 VEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEM 557



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 148/360 (41%), Gaps = 38/360 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M+     PS+  ++ L+SA  +    D   S    M+++     ++YTYSI I   
Sbjct: 62  LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLG-ISHNLYTYSIFINYF 120

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +  L   IL +M  LG   S VT N++++G+    +  E  +    MVE G   PD
Sbjct: 121 CRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG-YQPD 179

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T  +++          +         + G + D+ T   +     + G  D   ++++
Sbjct: 180 TVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLN 239

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+K      VV YN +I+   K  H++   + F KM+ +G+KP+  TY  L+S     G
Sbjct: 240 KMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYG 299

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERHCVPD---- 310
                  +L  +   ++  D  FFN +I A+ + G + +  +L+  M K +HC PD    
Sbjct: 300 RWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAY 359

Query: 311 -------------------------------NITFATMIQAYNALGMTEAAQNLENKMIA 339
                                           +T+ T+I  +      + AQ +  +M++
Sbjct: 360 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 419



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 137/313 (43%), Gaps = 38/313 (12%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           LD+A     DM   S   P +  +S L+ +  K ++FDL+  +  +M  LGI  +  TY+
Sbjct: 56  LDDAIGLFGDMVK-SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
             I+ + +  +     +    M++ G   P I TLNS+++ + +   I +     ++   
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLG-YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 173

Query: 165 MGVKADIQTLNILTK----------------------------SYG-------RAGMYDK 189
           MG + D  T   L                              +YG       + G  D 
Sbjct: 174 MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDL 233

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             ++++ M+K      VV YN +I+   K  H++   + F KM+ +G+KP+  TY  L+S
Sbjct: 234 ALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLIS 293

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERHCV 308
                G       +L  +   ++  D  FFN +I A+ + G + +  +L+  M K +HC 
Sbjct: 294 CLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCF 353

Query: 309 PDNITFATMIQAY 321
           PD + + T+I+ +
Sbjct: 354 PDVVAYNTLIKGF 366


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 126/249 (50%), Gaps = 2/249 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+ ++    + L E M+ DG +P+V  Y  L+ +YG++  L EA +  N M+ +  C+
Sbjct: 395 ILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMG-CE 453

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI    K    D+   +   M  +G+     TY+ +I+  GK+         
Sbjct: 454 PDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRL 513

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV+ G C P+I T N +I+    + N +   K Y +    G K D  T +I+ +  G
Sbjct: 514 FCEMVDQG-CVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLG 572

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  ++  +V   M++  + P    Y ++I+ +GKAG++EK  E++  M   G+ PN  
Sbjct: 573 YCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVP 632

Query: 243 TYCSLVSAY 251
           T  SL+SA+
Sbjct: 633 TCNSLLSAF 641



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 137/280 (48%), Gaps = 1/280 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +TY+ ++    +   F  I K+L +M   G + + VTYN +I  YG+A    E  + F
Sbjct: 385 DGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVF 444

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M E G C PD  T  ++I  +  +G ++     Y     +G+  D  T +++    G+
Sbjct: 445 NQMQEMG-CEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGK 503

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G       +   M  +   P +VTYNI+I    KA + +   + ++ M++ G KP+ +T
Sbjct: 504 SGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDKVT 563

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  ++      G + + +++  +++ ++ + D P +  +I  +G+AG+VEK  E +  M 
Sbjct: 564 YSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAML 623

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
               +P+  T  +++ A+  +     A NL   M+ +  N
Sbjct: 624 RAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLN 663



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 122/273 (44%), Gaps = 10/273 (3%)

Query: 79  HRFDLIEKILAEMSY-LGIECSAVTYNTIIDGYGKAKKFEEME------SSFSAMVESGG 131
           H  + ++ IL ++ +    E +    N  ID Y   +  ++++      S F  +    G
Sbjct: 322 HVVEGVKDILKQLRWGPATEKALYNLNFSIDAYQANQILKQLQDHSVALSFFYWLKRQPG 381

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              D  T  +M+   G +     + K   +    G + ++ T N L  SYGRA    +  
Sbjct: 382 FWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEAL 441

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           +V + MQ+    P  VTY  +I+   KAG ++     +++M+  G+ P++ TY  +++  
Sbjct: 442 NVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCL 501

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K+G +     +  ++ +   + +   +N +I+   +A + +   +L+  M+     PD 
Sbjct: 502 GKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDK 561

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           +T++ +++     G  E A   E     MK+N+
Sbjct: 562 VTYSIVMEVLGYCGYLEEA---EAVFFEMKQNN 591



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/290 (20%), Positives = 126/290 (43%), Gaps = 17/290 (5%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E+A  +F  M  +   P   VY  L+  +G++G +++A+   + M   + 
Sbjct: 568 MEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKAGNVEKAWEWYHAMLR-AG 626

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+V T + L+ +  + HR      +L  M  LG+  S  TY  ++    +A+   +M 
Sbjct: 627 LLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTEAQSPYDMG 686

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKADIQTLNILTK 179
                M  SG  HP    L SM +A  +  N+ + + K+ +  +    +     ++ +  
Sbjct: 687 FCCELMAVSG--HPAHAFLQSMPAAGPDGQNVRDHVSKFLDLMHSEDREGKRGLVDAVVD 744

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVT--------YNIVIETFGKA-GHIEKMEEYFK 230
              ++G+ ++  SV +   ++  +P  +          N+ + + G A   + +   +F+
Sbjct: 745 FLHKSGLKEEAGSVWEVAAQKNVYPDAIREKSTCYWLINLHVMSDGTAVTALSRTLAWFR 804

Query: 231 K-MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           + M   G+ PN I    +++ + +   +     + + V+    +   PFF
Sbjct: 805 RQMLASGVGPNRI---DIITGWGRRSRVTGSSLVRQAVQELLHVFSFPFF 851



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 43/180 (23%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +  K +  + A  L+  M + G KP    Y+ ++   G  G L+EA +   +MK  ++
Sbjct: 533 IALQAKARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQ-NN 591

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD   Y +L                                   ID +GKA   E+  
Sbjct: 592 WVPDEPVYGLL-----------------------------------IDLWGKAGNVEKAW 616

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNIL 177
             + AM+ + G  P++ T NS++SA+     + ++   YN    M   G+   +QT  +L
Sbjct: 617 EWYHAMLRA-GLLPNVPTCNSLLSAF---LRVHRLPDAYNLLQNMVTLGLNPSLQTYTLL 672


>gi|440804730|gb|ELR25603.1| pentatricopeptide repeat domain containing protein [Acanthamoeba
           castellanii str. Neff]
          Length = 642

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 168/351 (47%), Gaps = 19/351 (5%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN-DMKSVS 59
           + +L + +Q E A  L E+M   G  P++ V + L+   GQ+   D A      + + ++
Sbjct: 111 LPLLARTRQWETAVELVELMPRHGHTPNLFVISGLLKVLGQARQPDNAHYLAEIERRGLT 170

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD + +S LI +     R D  E+  A M+ LG+  +   ++ +I+  G A + ++ 
Sbjct: 171 ---PDSHCFSALITALGGAGRADEAERYFARMTQLGLAPNLHCFSALINALGNAGRVDDA 227

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E  F AM +  G  PD    +++I+A G +G + + E+ + +   +GV  D+   + L  
Sbjct: 228 ERCFDAM-DQLGVVPDAHCFSTLIAALGTAGRVAEAERHFAKMEKLGVVPDLHCFSTLMS 286

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MK 238
           +  +AG  D  + V   +  R   P +V +N +I  F  AG  ++ E +F K+   G +K
Sbjct: 287 ALTKAGKVDAAQHVFHQIASRGLKPDLVCFNALISGFADAGRADEAEHWFAKITTTGRLK 346

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQV------------ENSDVILDTPFFNCIISAY 286
           P+ I+Y +L+ A        +  ++L+++             + +V+  T   +C+  A 
Sbjct: 347 PDRISYSALIQANEVVARPDRALALLQEMTHKVLTLCLLLVCDQNVVSYTTVISCLAKAR 406

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           G+   +++  E+F  M ++   P+  TF  +I  +  +G  E A++   +M
Sbjct: 407 GR-HHMDQAQEVFNEMVKQGVRPNATTFGALIHGHALMGDLETARSRLKQM 456



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 166/358 (46%), Gaps = 20/358 (5%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +  LG   + ++A   F  M   GL P++  ++AL++A G +G +D+A    + M  +  
Sbjct: 180 ITALGGAGRADEAERYFARMTQLGLAPNLHCFSALINALGNAGRVDDAERCFDAMDQLG- 238

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD + +S LI +     R    E+  A+M  LG+      ++T++    KA K +  +
Sbjct: 239 VVPDAHCFSTLIAALGTAGRVAEAERHFAKMEKLGVVPDLHCFSTLMSALTKAGKVDAAQ 298

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTK 179
             F   + S G  PD+   N++IS + ++G  ++ E W+ +    G +K D  + + L +
Sbjct: 299 HVFH-QIASRGLKPDLVCFNALISGFADAGRADEAEHWFAKITTTGRLKPDRISYSALIQ 357

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFF--------PTVVTYNIVIETFGKA---GHIEKMEEY 228
           +       D+  +++  M  +             VV+Y  VI    KA    H+++ +E 
Sbjct: 358 ANEVVARPDRALALLQEMTHKVLTLCLLLVCDQNVVSYTTVISCLAKARGRHHMDQAQEV 417

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYG 287
           F +M  +G++PN+ T+ +L+  ++  G +    S L+Q+    ++       N ++ A  
Sbjct: 418 FNEMVKQGVRPNATTFGALIHGHALMGDLETARSRLKQMSTEFNLAPAAEIHNILMDAEK 477

Query: 288 QAG--DVEKMGELFLT---MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           +     VE   ++      MK+    PD+ TF+ +I A    G+   A++  + M ++
Sbjct: 478 RVATDPVEAYHQVLRAVDHMKQEGVRPDHATFSIVIDAAGFAGLPHEAEHQFHAMTSL 535



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 158/345 (45%), Gaps = 32/345 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M  L K  + + A  +F  + S GLKP +  + AL+S +  +G  DEA      + +   
Sbjct: 285 MSALTKAGKVDAAQHVFHQIASRGLKPDLVCFNALISGFADAGRADEAEHWFAKITTTGR 344

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY--------LGIECSAVTYNTIIDGYGK 112
            KPD  +YS LI++     R D    +L EM++        L  + + V+Y T+I    K
Sbjct: 345 LKPDRISYSALIQANEVVARPDRALALLQEMTHKVLTLCLLLVCDQNVVSYTTVISCLAK 404

Query: 113 AKKFEEMESS---FSAMVESGGCHPDIFTLNSMISAYGNSGNIE----KMEKWYNEFNLM 165
           A+    M+ +   F+ MV+  G  P+  T  ++I  +   G++E    ++++   EFNL 
Sbjct: 405 ARGRHHMDQAQEVFNEMVKQ-GVRPNATTFGALIHGHALMGDLETARSRLKQMSTEFNL- 462

Query: 166 GVKADIQTLNILTKSYGRAGM-----YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
              A+I   NIL  +  R        Y ++   +D M++    P   T++IVI+  G AG
Sbjct: 463 APAAEIH--NILMDAEKRVATDPVEAYHQVLRAVDHMKQEGVRPDHATFSIVIDAAGFAG 520

Query: 221 HIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSIL-----RQVENS--DV 272
              + E  F  M    G+ PN+  + SL+ A ++ G + K +++L     RQ  ++    
Sbjct: 521 LPHEAEHQFHAMTSLHGLHPNANNFTSLIEALARNGQLDKAEAVLDSLAARQATSALEHD 580

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            L    FN ++     AGD  +   +   M +    PD+I  A +
Sbjct: 581 RLTAKSFNTLLGFCIGAGDAARGQRVAAKMHQAGVEPDDIGQAKL 625


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 150/315 (47%), Gaps = 2/315 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C +   A      M+  G +PS+  + +LV+ +     + EA S ++ +  +   +P+V
Sbjct: 120 RCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLG-YEPNV 178

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             Y+ +I S  +  + D    +L  M  +GI    +TYN++I     + K+       S 
Sbjct: 179 VIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSD 238

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+  G  HPD+ T ++MI  +G  G + + +K Y+E     V  +I T N L       G
Sbjct: 239 MMRMG-IHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHG 297

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           + D+ + V++FM  + FFP  VTYN ++  + K+  ++   +    M H G+  ++ TY 
Sbjct: 298 LLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYN 357

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L   Y +AG     + +L ++ +  V+ D   FN ++    + G +EK       +++ 
Sbjct: 358 TLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKS 417

Query: 306 HCVPDNITFATMIQA 320
             V   IT+  +I+ 
Sbjct: 418 ETVVGIITYNIIIKG 432



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 151/327 (46%), Gaps = 2/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L + ++  G +P+V +Y  ++ +  ++  +D A   +N M+ +   +PDV TY+ 
Sbjct: 160 QEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMG-IRPDVITYNS 218

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       ++ +  +IL++M  +GI    +T++ +ID +GK  +  E +  +  M++  
Sbjct: 219 LITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRS 278

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P+I T NS+I+     G +++ +K  N     G   +  T N L   Y ++   D  
Sbjct: 279 -VDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDA 337

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M          TYN + + + +AG     E+   +M   G+ P+  T+  L+  
Sbjct: 338 MKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDG 397

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G I K    L  ++ S+ ++    +N II    +A  VE    LF ++  +   PD
Sbjct: 398 LCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPD 457

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            IT+ TM+       +   A  L  KM
Sbjct: 458 VITYTTMMIGLRRKRLWLEAHELYRKM 484



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 148/330 (44%), Gaps = 2/330 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V + K K+ E    LF  +   G+   +  ++ L+  + +   L  A S +  M  +  
Sbjct: 80  LVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLG- 138

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            +P + T+  L+      +R      ++ ++  LG E + V YNTIID   + ++ +   
Sbjct: 139 FEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTAL 198

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              + M E  G  PD+ T NS+I+   +SG      +  ++   MG+  D+ T + +   
Sbjct: 199 DVLNHM-EKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDV 257

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           +G+ G   + +   D M +R   P +VTYN +I      G +++ ++    M  +G  PN
Sbjct: 258 FGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPN 317

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           ++TY +LV+ Y K+  +     IL  + +  V  DT  +N +   Y QAG      ++  
Sbjct: 318 AVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLA 377

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAA 330
            M     +PD  TF  ++      G  E A
Sbjct: 378 RMVSCGVLPDIYTFNMLLDGLCEHGKIEKA 407



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 131/276 (47%), Gaps = 1/276 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+Y++S LI    +  R  L    L +M  LG E S VT+ ++++G+    + +E  S  
Sbjct: 107 DLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLV 166

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             +V   G  P++   N++I +   +  ++      N    MG++ D+ T N L      
Sbjct: 167 DQIV-GLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFH 225

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G +     ++  M +    P V+T++ +I+ FGK G + + ++ + +M  R + PN +T
Sbjct: 226 SGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVT 285

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL++     GL+ +   +L  + +     +   +N +++ Y ++  V+   ++   M 
Sbjct: 286 YNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMS 345

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
                 D  T+ T+ Q Y   G   AA+ +  +M++
Sbjct: 346 HDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVS 381



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 120/252 (47%), Gaps = 2/252 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+  G+ P V  ++A++  +G+ G L EA    ++M   S   P++ TY+ LI       
Sbjct: 239 MMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRS-VDPNIVTYNSLINGLCIHG 297

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             D  +K+L  M   G   +AVTYNT+++GY K+K+ ++       M   G    D FT 
Sbjct: 298 LLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDG-VDGDTFTY 356

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N++   Y  +G     EK        GV  DI T N+L       G  +K    ++ +QK
Sbjct: 357 NTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQK 416

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
                 ++TYNI+I+   KA  +E     F  +  +G+ P+ ITY +++    +  L ++
Sbjct: 417 SETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLE 476

Query: 260 VDSILRQVENSD 271
              + R+++  D
Sbjct: 477 AHELYRKMKKDD 488



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  Q   A  +   M+S G+ P +  +  L+    + G +++A   + D++  S+  
Sbjct: 362 GYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQK-SETV 420

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
             + TY+I+IK   K ++ +    +   ++  G+    +TY T++ G  + + + E    
Sbjct: 421 VGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHEL 480

Query: 123 FSAMVESGGCHP 134
           +  M +  G  P
Sbjct: 481 YRKMKKDDGLMP 492


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 149/317 (47%), Gaps = 1/317 (0%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82
           DG++ S+ VY  L++   +   +DEA     +   +     D  +++ILI+   +  + D
Sbjct: 196 DGVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHG-PFDSCSFNILIRGLCRIGKVD 254

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
              ++  EM   G     +TYNT+I+G+ +  + +        ++      PD+ T  S+
Sbjct: 255 KAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSI 314

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           IS Y   G +EK    +N     G+K +  T NIL   +G+ G      ++ + M     
Sbjct: 315 ISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGC 374

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P ++T+  +I+   + G +E+  + + ++  R + PN  T+  L +A  K   + +   
Sbjct: 375 PPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARG 434

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
            LR ++   ++     +N +I  + +AG+V++   +   M+E+ C PD IT+  +I  + 
Sbjct: 435 FLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHC 494

Query: 323 ALGMTEAAQNLENKMIA 339
             G    A ++ N+M+ 
Sbjct: 495 MKGRLSEAISIFNRMLG 511



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 133/300 (44%), Gaps = 3/300 (1%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           +  L+    + G +D+AF   N+M+    C PDV TY+ LI    + +  D    +L E+
Sbjct: 240 FNILIRGLCRIGKVDKAFELFNEMRGFG-CSPDVITYNTLINGFCRVNEVDRGHDLLKEL 298

Query: 92  -SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
            S   +    VTY +II GY K  K E+    F+ M+ SG   P+ FT N +I+ +G  G
Sbjct: 299 LSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSG-IKPNAFTFNILINGFGKVG 357

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           ++   E  Y E  L+G   DI T   L   + R G  ++   +   +  R   P   T+ 
Sbjct: 358 DMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFA 417

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           I+     K   + +   + + +K R +      Y  ++  + KAG + + + IL ++E  
Sbjct: 418 ILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEK 477

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
               D   +  +I  +   G + +   +F  M    C PD+IT  ++I      GM   A
Sbjct: 478 RCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEA 537



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 3/292 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G C+  + ++A  LF  M   G  P V  Y  L++ + +   +D     + ++ S 
Sbjct: 242 ILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSK 301

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +D  PDV TY+ +I    K  + +    +   M   GI+ +A T+N +I+G+GK      
Sbjct: 302 NDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVS 361

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E+ +  M+   GC PDI T  S+I  +  +G +E+  K ++E N   +  +  T  ILT
Sbjct: 362 AENMYEEMLLL-GCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILT 420

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +  +     + R  +  ++ R        YN VI+ F KAG++++      +M+ +  K
Sbjct: 421 NALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCK 480

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           P+ ITY  L+  +   G + +  SI  ++  +    D+     +IS   +AG
Sbjct: 481 PDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAG 532



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 137/333 (41%), Gaps = 44/333 (13%)

Query: 9   QPEQASLLFEV-MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
            PE A   F++  ++  L  S   Y+ L+ +  + G   E+   + D  ++    PD   
Sbjct: 116 NPELALKFFQLSRVNLNLCHSFRTYSFLLRSLSEMGF-HESAKAVYDCMNIDGHSPDASV 174

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
              L+ S T   +F++     A     G+E S V YN +++   +  + +E    F    
Sbjct: 175 LGFLVSSATDAGKFNI-----ARTWVDGVEFSLVVYNKLLNQLVRGNQVDEAVCFFR--- 226

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E  G H                                    D  + NIL +   R G  
Sbjct: 227 EQMGLHGPF---------------------------------DSCSFNILIRGLCRIGKV 253

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCS 246
           DK   + + M+     P V+TYN +I  F +   +++  +  K++  +  + P+ +TY S
Sbjct: 254 DKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTS 313

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++S Y K G + K   +   + +S +  +   FN +I+ +G+ GD+     ++  M    
Sbjct: 314 IISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLG 373

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           C PD ITF ++I  +   G  E +  L +++ A
Sbjct: 374 CPPDIITFTSLIDGHCRTGKVERSLKLWHELNA 406



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 115/270 (42%), Gaps = 35/270 (12%)

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTI-IDGYGKAKKFEEMESSFSAMVESGGCH 133
           C  F  +  + + L+EM +   E +   Y+ + IDG+                       
Sbjct: 134 CHSFRTYSFLLRSLSEMGFH--ESAKAVYDCMNIDGHS---------------------- 169

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           PD   L  ++S+  ++G       W +     GV+  +   N L     R    D+  +V
Sbjct: 170 PDASVLGFLVSSATDAGKFNIARTWVD-----GVEFSLVVYNKLLNQLVRGNQVDE--AV 222

Query: 194 MDFMQKRFFFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
             F ++          ++NI+I    + G ++K  E F +M+  G  P+ ITY +L++ +
Sbjct: 223 CFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGF 282

Query: 252 SKAGLIMKVDSILRQV-ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            +   + +   +L+++   +D+  D   +  IIS Y + G +EK   LF  M      P+
Sbjct: 283 CRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPN 342

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAM 340
             TF  +I  +  +G   +A+N+  +M+ +
Sbjct: 343 AFTFNILINGFGKVGDMVSAENMYEEMLLL 372


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 161/330 (48%), Gaps = 13/330 (3%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K +Q E+   L   M  +GL P +  Y  L++A  +SG L +A    ++M SV    PDV
Sbjct: 161 KKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEM-SVRGVNPDV 219

Query: 66  YTYSILIKSCTKFHRF----DLIEKILAEMS-YLGIECSAVTYNTIIDGYGKAKKFEEME 120
             Y+ILI    +   F    ++ +++L E S Y  +E    TYN +I+G  K  K +E  
Sbjct: 220 MCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVE----TYNIMINGLCKLGKLDESM 275

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             ++ M ++    PD+FT +SMI     +GN    EK + E    G+  D++T N +   
Sbjct: 276 EMWNRMKKNEK-SPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSG 334

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             R G  +K   + + M K      +V+YN++I+       +E+   Y++ +  RG+K +
Sbjct: 335 LFRTGKLNKCFELWNVMSKNNCC-NIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKAD 393

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           S TY  L++   K G + K   IL + EN    LDT  ++ ++    + G +E+  EL  
Sbjct: 394 STTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIH 453

Query: 301 TMKERHCVPDNITFATMIQAY-NALGMTEA 329
            MK+     ++  F ++I  Y  A  + EA
Sbjct: 454 QMKKNRRKLNSHVFNSLINGYVRAFKLEEA 483



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 152/306 (49%), Gaps = 3/306 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + ++M +     S DV  + + AY +  + D+A +   +M  +  C P + +++ ++ + 
Sbjct: 65  IVDLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAF 124

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            + +++   E         G+  +  TYN +I    K ++FE+ +   + M E+ G +PD
Sbjct: 125 IESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFEN-GLNPD 183

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I +  ++I+A   SGN+    + ++E ++ GV  D+   NIL   + R G + K   +  
Sbjct: 184 ILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWK 243

Query: 196 -FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             + +   +P+V TYNI+I    K G +++  E + +MK     P+  T+ S++   SKA
Sbjct: 244 RLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKA 303

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G     + + +++  S +  D   +N ++S   + G + K  EL+  M + +C  + +++
Sbjct: 304 GNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC-NIVSY 362

Query: 315 ATMIQA 320
             +IQ 
Sbjct: 363 NMLIQG 368



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 126/256 (49%), Gaps = 1/256 (0%)

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + +I+  M      CS     + I  Y K    ++  + F  MV+  GC+P I + NSM+
Sbjct: 62  VGRIVDLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSML 121

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           +A+  S    + E ++  F   G+  ++QT NIL K   +   ++K + ++ +M +    
Sbjct: 122 NAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLN 181

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P +++Y  +I    K+G++    E F +M  RG+ P+ + Y  L+  + + G  +K + I
Sbjct: 182 PDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEI 241

Query: 264 L-RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
             R +  S V      +N +I+   + G +++  E++  MK+    PD  TF++MI   +
Sbjct: 242 WKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLS 301

Query: 323 ALGMTEAAQNLENKMI 338
             G   AA+ +  +MI
Sbjct: 302 KAGNFNAAEKVFQEMI 317



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 148/334 (44%), Gaps = 18/334 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K      A  +F+ M+  GL P V  Y A++S   ++G L++ F   N M   + C  
Sbjct: 300 LSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC-- 357

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYL---GIECSAVTYNTIIDGYGKA----KKF 116
           ++ +Y++LI+      +   +E+ +     L   G++  + TY  +I+G  K     K  
Sbjct: 358 NIVSYNMLIQGLLDNKK---VEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKAL 414

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
             +E +     E+ G   D F  +SM+      G +E+  +  ++      K +    N 
Sbjct: 415 RILEEA-----ENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNS 469

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   Y RA   ++  SV+  M+ +   PTVV+YN +I    KA          K+M   G
Sbjct: 470 LINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEG 529

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           +KP+ ITY  L+    +   +    ++  Q  N  +  D    N II     A  V+   
Sbjct: 530 LKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVAL 589

Query: 297 ELFLTMKERHCVPDNITFATMIQA-YNALGMTEA 329
           E+F  M++ +CVPD +T  T+++  Y A    EA
Sbjct: 590 EIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEA 623



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 129/288 (44%), Gaps = 6/288 (2%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK     +A  + E   ++G       Y+++V    + G+L++A   I+ MK  
Sbjct: 399 LLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKK- 457

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +  K + + ++ LI    +  + +    +L EM       + V+YNTII+G  KA++F +
Sbjct: 458 NRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSD 517

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE-KMEKWYNEFNLMGVKADIQTLNIL 177
              S   M+E G   PD+ T + +I        ++  +  W+   N   +K D+Q  NI+
Sbjct: 518 AYLSLKEMLEEG-LKPDMITYSLLIDGLCRGEKVDMALNLWHQCIN-KRLKPDLQMHNII 575

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                 A   D    +   M++    P +VT+N ++E   KAG   +  + + ++   G+
Sbjct: 576 IHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGL 635

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           +P+ I+Y            +      L    +  ++ + P +N ++ A
Sbjct: 636 QPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVLVRA 683


>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 146/309 (47%), Gaps = 5/309 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L + +Q E +  + E M +  ++P    Y+ L+S   +    D A +  + M   + C 
Sbjct: 52  VLRRGRQWEFSQQIAEDMANADVRPDNITYSTLISCANRCNYQDAAMAWFDRMHE-AGCV 110

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TYS +I    K  ++D    +   +   G +   VTY T++  +G+A       S 
Sbjct: 111 PDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSI 170

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +  G  PD    N MI+  G +G +    K + E    GVK +  TL+ + ++Y 
Sbjct: 171 FEEM-KGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYS 229

Query: 183 RAGMYDKMRSVMDFMQKRFFFPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           R G  + M  +  F + R      V+ YN V++   +AG   + E+Y ++M   G +PN 
Sbjct: 230 RCG--NVMEGLEVFQRLRQGVACDVIVYNAVLKMCREAGLASEAEQYLREMTESGHQPND 287

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY +++S Y+K G+ ++      Q+  +   +D   +  ++ AYG A +  K+ E+   
Sbjct: 288 WTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLLQAYGNAKEYNKVQEILDE 347

Query: 302 MKERHCVPD 310
           M   +C PD
Sbjct: 348 MTSVNCAPD 356



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 137/278 (49%), Gaps = 8/278 (2%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++YTY++++K   +  +++  ++I  +M+   +    +TY+T+I    +    +   + F
Sbjct: 42  NIYTYNVMLKVLRRGRQWEFSQQIAEDMANADVRPDNITYSTLISCANRCNYQDAAMAWF 101

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E+G C PD+ T ++MI  YG  G  ++    Y      G K D  T   + + +GR
Sbjct: 102 DRMHEAG-CVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLFGR 160

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG      S+ + M+     P  + YNI+I   G+AG +    + F++M+  G+KPN++T
Sbjct: 161 AGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVT 220

Query: 244 YCSLVSAYSKAGLIM---KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             +++  YS+ G +M   +V   LRQ    DVI+    +N ++    +AG   +  +   
Sbjct: 221 LSTVMETYSRCGNVMEGLEVFQRLRQGVACDVIV----YNAVLKMCREAGLASEAEQYLR 276

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            M E    P++ T+  MI  Y   GM   A    ++M+
Sbjct: 277 EMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMV 314



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 151/322 (46%), Gaps = 4/322 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYT-ALVSAYGQSGLLDEAFSTINDMKSVS 59
           + +L   K   QA LLF  + ++    S+++YT  ++    + G   E    I +  + +
Sbjct: 14  VAILNSLKSWRQALLLFRWLRAEH-SSSLNIYTYNVMLKVLRRGRQWEFSQQIAEDMANA 72

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           D +PD  TYS LI    + +  D        M   G     VTY+T+ID YGK  K++E 
Sbjct: 73  DVRPDNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEA 132

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            + +   V+  G  PD  T  +M+  +G +G I      + E    GV+ D    NI+  
Sbjct: 133 IALYER-VKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIA 191

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
             GRAG       V + M++    P  VT + V+ET+ + G++ +  E F++++ +G+  
Sbjct: 192 CLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLR-QGVAC 250

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + I Y +++    +AGL  + +  LR++  S    +   +  +IS Y + G   +    F
Sbjct: 251 DVIVYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTF 310

Query: 300 LTMKERHCVPDNITFATMIQAY 321
             M E     D + + +++QAY
Sbjct: 311 SQMVEAGYQIDVMAYTSLLQAY 332



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 123/293 (41%), Gaps = 3/293 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C   + A   F+ M   G  P V  Y+ ++  YG+ G  DEA +    +K  +  KPD 
Sbjct: 90  RCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQ-AGWKPDK 148

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY  +++   +         I  EM   G++  A+ YN +I   G+A +       F  
Sbjct: 149 VTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEE 208

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M E  G  P+  TL++++  Y   GN+ +  + +      GV  D+   N + K    AG
Sbjct: 209 M-EREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLR-QGVACDVIVYNAVLKMCREAG 266

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           +  +    +  M +    P   TY  +I  + K G   +    F +M   G + + + Y 
Sbjct: 267 LASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYT 326

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           SL+ AY  A    KV  IL ++ + +   D      I++        E++G L
Sbjct: 327 SLLQAYGNAKEYNKVQEILDEMTSVNCAPDERLCCVILNLLDSCDTDEELGIL 379


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 163/375 (43%), Gaps = 52/375 (13%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSI 70
           A  LF  M   G+ P +  Y +++  +  SG   +A   + +M  + +S   PDV TY+ 
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKIS---PDVVTYNA 330

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI +  K  +F    ++  EM   GI  + +TYN++IDG+ K  + +  E  F  M  + 
Sbjct: 331 LINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMA-TK 389

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG----- 185
           GC PD+FT  ++I  Y  +  I+   +  +E    G+ A+  T N L   +   G     
Sbjct: 390 GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAA 449

Query: 186 -------------------------------------MYDKM-RSVMDFMQKRFFF---P 204
                                                M+  M +S MD      F    P
Sbjct: 450 LDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEP 509

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            V+TYNI+I      G   + EE +++M HRG+ P++ITY S++    K   + +   + 
Sbjct: 510 DVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 569

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             + +     +   FN +I+ Y +AG V+   ELF  M  R  V D I + T+I  +  +
Sbjct: 570 VSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKV 629

Query: 325 GMTEAAQNLENKMIA 339
           G    A ++  +MI+
Sbjct: 630 GNINGALDIFQEMIS 644



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 17/323 (5%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+ L++ ML  G+ P+   Y +++  + +   LD A      M +   C PDV+T++ L
Sbjct: 343 EAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM-ATKGCSPDVFTFTTL 401

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D   ++L EM   G+  + VTYNT+I G+               M+ SG 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 461

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWY-------------NEFNLMGVKADIQTLNILT 178
           C PDI T N+++    ++G ++   + +             + FN  GV+ D+ T NIL 
Sbjct: 462 C-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFN--GVEPDVLTYNILI 518

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                 G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   
Sbjct: 519 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFS 578

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN +T+ +L++ Y KAG +     +  ++    ++ D   +  +I  + + G++    ++
Sbjct: 579 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDI 638

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
           F  M      PD IT   M+  +
Sbjct: 639 FQEMISSGVYPDTITIRNMLTGF 661



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 138/316 (43%), Gaps = 1/316 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P V  +T L+        + EA    + M   + C+P+V T++ L+    +  R   
Sbjct: 144 GLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT-CRPNVVTFTTLMNGLCREGRIVE 202

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +L  M   G++ + +TY TI+DG  K        +    M E     P++   +++I
Sbjct: 203 AVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAII 262

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            +    G     +  + E    G+  D+ T N +   +  +G +     ++  M +R   
Sbjct: 263 DSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKIS 322

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVTYN +I  F K G   +  E + +M  RG+ PN+ITY S++  + K   +   + +
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 382

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              +       D   F  +I  Y  A  ++   EL   M  R  V + +T+ T+I  +  
Sbjct: 383 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 442

Query: 324 LGMTEAAQNLENKMIA 339
           +G   AA +L  +MI+
Sbjct: 443 VGDLNAALDLSQQMIS 458



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 155/378 (41%), Gaps = 44/378 (11%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  E A  LF  ML     PSV  +  L+    +    D   S    M+     + D+Y+
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           ++ILIK      +         +++ LG+    VT+ T++ G     +  E    F  M 
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMF 176

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNI--------EKMEKWYNEFNL--------MGVKAD- 170
           E+  C P++ T  ++++     G I          ME       +        M  K D 
Sbjct: 177 ET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 171 IQTLNILTK-------------------SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +  LN+L K                   S  + G +   +++   MQ++  FP + TYN 
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I  F  +G     E+  ++M  R + P+ +TY +L++A+ K G   +   +  ++    
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRG 355

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           +I +T  +N +I  + +   ++   ++F  M  + C PD  TF T+I  Y        A+
Sbjct: 356 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYC------GAK 409

Query: 332 NLENKMIAMKENSGKKLI 349
            +++ M  + E   + L+
Sbjct: 410 RIDDGMELLHEMPRRGLV 427



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 13/255 (5%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+ +    L   M   GL  +   Y  L+  +   G L+ A      M S   C PD+ T
Sbjct: 409 KRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC-PDIVT 467

Query: 68  YSILIKS-CTKFHRFDLIE----------KILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            + L+   C      D +E           + A   + G+E   +TYN +I G     KF
Sbjct: 468 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKF 527

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
            E E  +  M   G   PD  T +SMI        +++  + +          ++ T N 
Sbjct: 528 LEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNT 586

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   Y +AG  D    +   M +R      + Y  +I  F K G+I    + F++M   G
Sbjct: 587 LINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG 646

Query: 237 MKPNSITYCSLVSAY 251
           + P++IT  ++++ +
Sbjct: 647 VYPDTITIRNMLTGF 661



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 113/275 (41%), Gaps = 49/275 (17%)

Query: 109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK------WYNEF 162
           G+ + K  E+    FS M+ S    P    L S++      G + +ME+       Y + 
Sbjct: 53  GFHEIKGLEDAIDLFSDMLRS---RP----LPSVVDFCKLMGVVVRMERPDLVISLYQKM 105

Query: 163 NLMGVKADIQTLNILTKSY----------------GRAGMY----------------DKM 190
               ++ DI + NIL K +                 + G++                D++
Sbjct: 106 ERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRV 165

Query: 191 RSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
              +DF  + F     P VVT+  ++    + G I +      +M   G++P  ITY ++
Sbjct: 166 SEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTI 225

Query: 248 VSAYSKAGLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           V    K G  +   ++LR++E  S +I +   ++ II +  + G       LF  M+E+ 
Sbjct: 226 VDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
             PD  T+ +MI  + + G    A+ L  +M+  K
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 155/364 (42%), Gaps = 36/364 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS---- 59
           L    +P+    LF  M   G + +V ++T LV  + + G +D A S +++MKS S    
Sbjct: 213 LSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTAD 272

Query: 60  --------DC----------------------KPDVYTYSILIKSCTKFHRFDLIEKILA 89
                   DC                       PD  TY+ LI    K  R D   ++  
Sbjct: 273 LVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFE 332

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           E+           YNT+I GYG A KF+E  S      +  GC P +   N +++  G  
Sbjct: 333 ELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQ-KRKGCIPSVIAYNCILTCLGRK 391

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G +E+  + ++E        ++ T NIL     +AG  +    V D M++   FP ++T 
Sbjct: 392 GKVEEALRIHDEMR-QDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTV 450

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           NI+I+   KA  +++    F  + H+   P+S T+CSL+    + G +    S+  ++ +
Sbjct: 451 NIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLD 510

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
           SD I +   +  +I  + + G  E   +++  M  R C PD +   + +      G  E 
Sbjct: 511 SDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEK 570

Query: 330 AQNL 333
            + L
Sbjct: 571 GRAL 574



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 153/317 (48%), Gaps = 2/317 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ ++A  +F  +      P    + +L+   G+ G +D+A+S    M   SD  P
Sbjct: 457 LCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLD-SDQIP 515

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V  Y+ LI++  K  R +   KI  EM + G     +  N+ +D   KA + E+  + F
Sbjct: 516 NVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALF 575

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              +++ G  PD+ + + +I     +G   +  K + E    G+  D+   N +   + +
Sbjct: 576 EE-IKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCK 634

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G  DK   +++ M+ +   PTVVTY  V++   K   +++    F++ K  G+  N + 
Sbjct: 635 SGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVI 694

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL+  + K G I +   IL ++    +  ++  +NC++ A  +A ++++    F  MK
Sbjct: 695 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMK 754

Query: 304 ERHCVPDNITFATMIQA 320
              C P+ +T++ MI  
Sbjct: 755 NLKCSPNAMTYSIMING 771



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 151/333 (45%), Gaps = 3/333 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + ++A  + E+M     +P+   YT L+ A   +   D   +  + M+ +   + +V
Sbjct: 180 KSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIG-YEANV 238

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           + ++ L++   +  R D    +L EM         V YN  ID +GK  K  +M   F  
Sbjct: 239 HLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKV-DMAWKFFH 297

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
            +++ G  PD  T  ++I     +  +++  + + E +L      +   N +   YG AG
Sbjct: 298 EMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAG 357

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            +D+  S+++  +++   P+V+ YN ++   G+ G +E+      +M+     PN  TY 
Sbjct: 358 KFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA-APNLTTYN 416

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+    KAG +     +   ++ + +  +    N +I    +A  +++   +FL +  +
Sbjct: 417 ILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHK 476

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            C PD+ TF ++I      G  + A +L  KM+
Sbjct: 477 VCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKML 509



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 151/322 (46%), Gaps = 10/322 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           ML K  + E A  + + M   GL P++     ++    ++  LDEA S    +     C 
Sbjct: 421 MLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDH-KVCS 479

Query: 63  PDVYTYSILIKSCTKFHRFD----LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           PD  T+  LI    +  R D    L EK+L       +    V Y ++I  + K  + E+
Sbjct: 480 PDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNV----VVYTSLIQNFFKCGRKED 535

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               +  MV  G C PD+  LNS +     +G +EK    + E    G+  D+++ +IL 
Sbjct: 536 GHKIYKEMVHRG-CSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILI 594

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               +AG   +   +   M+++     V+ YN VI+ F K+G ++K  +  ++MK +G++
Sbjct: 595 HGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQ 654

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P  +TY S+V   +K   + +   +  + ++  V L+   ++ +I  +G+ G +++   +
Sbjct: 655 PTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLI 714

Query: 299 FLTMKERHCVPDNITFATMIQA 320
              + ++   P++ T+  ++ A
Sbjct: 715 LEELMQKGLTPNSYTWNCLLDA 736



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 148/325 (45%), Gaps = 2/325 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + E+   LFE + + GL P V  Y+ L+    ++G   E +    +MK       DV
Sbjct: 564 KAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKE-QGLHLDV 622

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             Y+ +I    K  + D   ++L EM   G++ + VTY +++DG  K  + +E    F  
Sbjct: 623 LAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEE 682

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
             +S G   ++   +S+I  +G  G I++      E    G+  +  T N L  +  +A 
Sbjct: 683 -AKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAE 741

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D+ +     M+     P  +TY+I+I          K   ++++M+ +G+KPN+ITY 
Sbjct: 742 EIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYT 801

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           ++++  +KAG +M+   +  + + S  + D+  +N +I     A        +F   + +
Sbjct: 802 TMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLK 861

Query: 306 HCVPDNITFATMIQAYNALGMTEAA 330
            C  ++ T   ++ A +     E A
Sbjct: 862 GCRVNSKTCVVLLDALHKADCLEQA 886



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 145/314 (46%), Gaps = 3/314 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G   + ++A  L E     G  PSV  Y  +++  G+ G ++EA    ++M+   D  P+
Sbjct: 354 GSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQ--DAAPN 411

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY+ILI    K    +   K+   M   G+  + +T N +ID   KA+K +E  S F 
Sbjct: 412 LTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFL 471

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + +   C PD  T  S+I   G  G ++     Y +        ++     L +++ + 
Sbjct: 472 GL-DHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKC 530

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  +    +   M  R   P ++  N  ++   KAG +EK    F+++K +G+ P+  +Y
Sbjct: 531 GRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSY 590

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L+    KAG   +   +  +++   + LD   +N +I  + ++G V+K  +L   MK 
Sbjct: 591 SILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKT 650

Query: 305 RHCVPDNITFATMI 318
           +   P  +T+ +++
Sbjct: 651 KGLQPTVVTYGSVV 664



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 128/278 (46%), Gaps = 9/278 (3%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+VY   +++ + T+    D +E+IL EMS  G   S      ++  + K+ K +E    
Sbjct: 133 PEVYNAFLMVMARTR--NLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGV 190

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+      P      ++I A   +   + M   +++   +G +A++     L + + 
Sbjct: 191 IE-MMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFA 249

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G  D   S++D M+   F   +V YN+ I+ FGK G ++   ++F +MK +G+ P+ +
Sbjct: 250 REGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDV 309

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGELF 299
           TY +L+    KA    ++D  +   E  D+    P    +N +I  YG AG  ++   L 
Sbjct: 310 TYTTLIGVLCKA---RRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLL 366

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              K + C+P  I +  ++      G  E A  + ++M
Sbjct: 367 ERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEM 404



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 149/335 (44%), Gaps = 3/335 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L K ++ ++A  LFE +  +   P V  Y  ++  YG +G  DEA+S +   K    C 
Sbjct: 317 VLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKR-KGCI 375

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V  Y+ ++    +  + +   +I  EM       +  TYN +ID   KA + E     
Sbjct: 376 PSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAP-NLTTYNILIDMLCKAGELEAALKV 434

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E+G   P+I T+N MI     +  +++    +   +      D +T   L    G
Sbjct: 435 QDTMKEAG-LFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLG 493

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G  D   S+ + M      P VV Y  +I+ F K G  E   + +K+M HRG  P+ +
Sbjct: 494 RRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLM 553

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
              S +    KAG + K  ++  +++   ++ D   ++ +I    +AG   +  +LF  M
Sbjct: 554 LLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEM 613

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           KE+    D + + T+I  +   G  + A  L  +M
Sbjct: 614 KEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEM 648


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 165/337 (48%), Gaps = 4/337 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    ++A  L+  M + G+ P V  YT L+  +  +G L EAF  +N+M  + +  
Sbjct: 159 GLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEM-ILKNIN 217

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++YTY+ LI +  K  +    + +LA M+  G++   V Y+ ++DGY    + ++ +  
Sbjct: 218 PNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQI 277

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV++G  +PD+++ N +I+       +++      E     +  D  T + L     
Sbjct: 278 FLVMVQTG-VNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLC 336

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G    +  +   M  R     +VTYN +++   K  +++K    F KMK RG++PN  
Sbjct: 337 KLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKY 396

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+    K G + K  ++ + +      +D   +  +IS   + G  ++   +   M
Sbjct: 397 TYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKM 456

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           ++  C+P+ +TF  +I++       + A+ L ++MIA
Sbjct: 457 EDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIA 493



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 153/336 (45%), Gaps = 8/336 (2%)

Query: 2   VMLGKCKQPE-QASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C + E + SL F + +++ G +     Y  L++   + G   E    I  ++++ 
Sbjct: 86  LMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIG---ETRCAIKLLRTIE 142

Query: 60  D--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           D   +PDV  YS +I    K    D    + +EM+  GI    +TY T+I G+  A +  
Sbjct: 143 DRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLM 202

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E     + M+     +P+I+T N++I      G +++ +         GVK D+   +IL
Sbjct: 203 EAFGLLNEMILKN-INPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSIL 261

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              Y   G   K + +   M +    P V +YNI+I    K   +++     ++M H+ M
Sbjct: 262 MDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNM 321

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P+++TY SL+    K G I  +  + +++ +     +   +N ++    +  +++K   
Sbjct: 322 IPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIA 381

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           LF+ MKER   P+  T+  +I      G  +  Q L
Sbjct: 382 LFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQAL 417



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 144/329 (43%), Gaps = 24/329 (7%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTK- 77
           M + G+ P +   + L++ +   G +  +FS +  +  +   +P+    + L+K  C K 
Sbjct: 36  MEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLG-YQPNTIILNTLMKGLCLKG 94

Query: 78  -------FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM--VE 128
                  FH     +K++A+    G +   V+Y  +++G  K     E   +   +  +E
Sbjct: 95  EVKKSLHFH-----DKVVAQ----GFQMDQVSYGILLNGLCK---IGETRCAIKLLRTIE 142

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                PD+   +++I        +++    Y+E N  G+  D+ T   L   +  AG   
Sbjct: 143 DRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLM 202

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   +++ M  +   P + TYN +I+T  K G +++ +     M  +G+KP+ + Y  L+
Sbjct: 203 EAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILM 262

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             Y   G + K   I   +  + V  D   +N II+   +   V++   L   M  ++ +
Sbjct: 263 DGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMI 322

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKM 337
           PD +T++++I     LG      +L  +M
Sbjct: 323 PDTVTYSSLIDGLCKLGRITTILDLTKEM 351



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 78/173 (45%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G+  D+ TL+IL   +   G      SV+  + K  + P  +  N +++     G ++K 
Sbjct: 40  GIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKS 99

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
             +  K+  +G + + ++Y  L++   K G       +LR +E+     D   ++ II  
Sbjct: 100 LHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDG 159

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +   V++  +L+  M  R   PD IT+ T+I  +   G    A  L N+MI
Sbjct: 160 LCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMI 212


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 164/373 (43%), Gaps = 41/373 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLK--------PSVDVYTALVSAYGQSGLLDEAFSTIND 54
           +LG   +P  A+ L +++    L         PSV  +  L+S     GLLD+A   +  
Sbjct: 101 LLGAGHRPHLAASLVDILHRAALALGPHRSALPSV--FDTLLSLLADHGLLDDAVRALAR 158

Query: 55  MKSVS------DCK------------------------PDVYTYSILIKSCTKFHRFDLI 84
           ++ +        C                         P+V+T++I+I    K       
Sbjct: 159 VRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEA 218

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
             +   M  +G     VTYN++IDGYGK  + EE+E   S M +SG C  D+ T N++I+
Sbjct: 219 RALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSG-CAADVVTYNALIN 277

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
            +   G IEK   ++ E   +GV A++ TL+    ++ + G+  +   +   M+ R   P
Sbjct: 278 CFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMP 337

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
              TY  +++   KAG ++       +M H+G+ PN +TY  +V    K G +   D +L
Sbjct: 338 NEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVL 397

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             +E + V  +   +  +I  +    + E+  +L   MK +    D   + T+I     +
Sbjct: 398 SLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKV 457

Query: 325 GMTEAAQNLENKM 337
              + A++L +KM
Sbjct: 458 QKLDEAKSLLHKM 470



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 152/368 (41%), Gaps = 35/368 (9%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV------ 58
           GKC + E+  LL   M   G    V  Y AL++ + + G +++A+S   +MK +      
Sbjct: 245 GKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANV 304

Query: 59  --------SDCK--------------------PDVYTYSILIKSCTKFHRFDLIEKILAE 90
                   + CK                    P+ +TY+ L+    K  R D    +L E
Sbjct: 305 VTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDE 364

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M + G+  + VTY  ++DG  K  K    +   S M E  G   +     ++I  +  + 
Sbjct: 365 MVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLM-ERAGVKANELLYTTLIHGHFMNK 423

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           N E+     NE    G++ D+     L     +    D+ +S++  M      P  V Y 
Sbjct: 424 NSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYT 483

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +++ F KAG   +      K+   G++PN +TYC+L+    KAG I +  S   ++   
Sbjct: 484 TIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMREL 543

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +  +   +  +I  + + G + K   L   M ++    D + + ++I  +   G  + A
Sbjct: 544 GLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGA 603

Query: 331 QNLENKMI 338
             L+ KMI
Sbjct: 604 FALKAKMI 611



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 157/347 (45%), Gaps = 4/347 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+    +A  LF  M   G+ P+   YT+LV    ++G LD+A   +++M       P+
Sbjct: 315 CKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVH-QGLVPN 373

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY++++    K  +  + + +L+ M   G++ + + Y T+I G+   K  E      +
Sbjct: 374 VVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLN 433

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M ++ G   D+    ++I        +++ +   ++ +  G++ +      +  ++ +A
Sbjct: 434 EM-KNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKA 492

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +  +++  +      P VVTY  +I+   KAG I +   +F KM+  G+ PN   Y
Sbjct: 493 GKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVY 552

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+  + K G + K   ++ ++ +  + LD   +  +I  + + GD++    L   M E
Sbjct: 553 TTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIE 612

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
                D   +   I  +  + M + A+ + ++MI       K    C
Sbjct: 613 TGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNC 659



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 101/231 (43%), Gaps = 4/231 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ ++A  L   M   GL+P+  +YT ++ A+ ++G   EA + ++ +   S  +P
Sbjct: 454 LCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPD-SGLQP 512

Query: 64  DVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           +V TY  LI   C     ++ I     +M  LG++ +   Y T+IDG+ K     +    
Sbjct: 513 NVVTYCALIDGLCKAGSIYEAISH-FDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHL 571

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + MV+  G   D     S+I  +   G+++       +    G++ D+         + 
Sbjct: 572 MNEMVDK-GMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFC 630

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
              M  + R V+  M      P    YN +I  + K G++E+      +M+
Sbjct: 631 NMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEME 681


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 164/345 (47%), Gaps = 9/345 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK  +P+ A  L   M    ++  V +Y+ ++ +  +   +D+A +   +M +  
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDN-K 269

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +PDV+TYS LI     + R+    ++L++M    I  + VT+N++ID + K  K  E 
Sbjct: 270 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEA 329

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E  F  M++     P+I T NS+I+ +     +++ ++ +          D+ T N L  
Sbjct: 330 EKLFDEMIQRS-IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIN 388

Query: 180 SYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            + +A  + D M    D M +R      VTY  +I  F +A   +  +  FK+M   G+ 
Sbjct: 389 GFCKAKKVVDGMELFRD-MSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN +TY +L+    K G + K   +   ++ S +  D   +N +     +AG VE   +L
Sbjct: 448 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDL 507

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           F ++  +   PD I + TMI  +   G+ E A  L    I MKE+
Sbjct: 508 FCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL---FIKMKED 549



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 161/334 (48%), Gaps = 2/334 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  + A  LF  M + G++P V  Y++L+S     G   +A   ++DM       P
Sbjct: 250 LCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE-RKINP 308

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V T++ LI +  K  +    EK+  EM    I+ + VTYN++I+G+    + +E +  F
Sbjct: 309 NVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIF 368

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + MV S  C PD+ T N++I+ +  +  +    + + + +  G+  +  T   L   + +
Sbjct: 369 TLMV-SKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQ 427

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A   D  + V   M      P ++TYN +++   K G +EK    F+ ++   M+P+  T
Sbjct: 428 ASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYT 487

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +     KAG +     +   +    V  D   +N +IS + + G  E+   LF+ MK
Sbjct: 488 YNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMK 547

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           E   +PD+ T+ T+I+A+   G   A+  L  +M
Sbjct: 548 EDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEM 581



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 148/328 (45%), Gaps = 37/328 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L + M+  G +P    +T LV    Q     EA + +  M  V  C+PD+ TY  +
Sbjct: 153 EAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM-VVKGCQPDLVTYGAV 211

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K    DL   +L +M    IE   V Y+T+ID   K +  ++  + F+ M ++ G
Sbjct: 212 INGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM-DNKG 270

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+FT +S+IS   N G      +W                             D  R
Sbjct: 271 IRPDVFTYSSLISCLCNYG------RWS----------------------------DASR 296

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + D ++++   P VVT+N +I+ F K G + + E+ F +M  R + PN +TY SL++ +
Sbjct: 297 LLSDMLERKIN-PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGF 355

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
                + +   I   + + D + D   +N +I+ + +A  V    ELF  M  R  V + 
Sbjct: 356 CMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNT 415

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
           +T+ T+I  +      + AQ +  +M++
Sbjct: 416 VTYTTLIHGFFQASDCDNAQMVFKQMVS 443



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 118/299 (39%), Gaps = 37/299 (12%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           LDEA     +M   S   P +  +S L+ +  K  +FDL+     +M  LG+  +  TYN
Sbjct: 46  LDEAVDLFGEMVK-SRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I+   +  +     +    M++ G   P I TLNS+++ + +   I +     ++   
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLG-YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 163

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
           MG +                                   P  VT+  ++    +     +
Sbjct: 164 MGYQ-----------------------------------PDTVTFTTLVHGLFQHNKASE 188

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
                ++M  +G +P+ +TY ++++   K G      ++L ++E   +  D   ++ +I 
Sbjct: 189 AVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVID 248

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           +  +   V+    LF  M  +   PD  T++++I      G    A  L + M+  K N
Sbjct: 249 SLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKIN 307



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 101/282 (35%), Gaps = 71/282 (25%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF+ M+   + P++  Y +L++ +     LDEA      M S  DC PDV TY+ L
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS-KDCLPDVVTYNTL 386

Query: 72  IKS-----------------------------CTKFHRF------DLIEKILAEMSYLGI 96
           I                                T  H F      D  + +  +M   G+
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSF------------------------SAMVESG-- 130
             + +TYNT++DG  K  K E+    F                        +  VE G  
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWD 506

Query: 131 --------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
                   G  PD+   N+MIS +   G  E+    + +    G   D  T N L +++ 
Sbjct: 507 LFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHL 566

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
           R G       ++  M+   F     TY +V +     G ++K
Sbjct: 567 RDGDKAASAELIKEMRSCRFAGDASTYGLVTDML-HDGRLDK 607


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 153/334 (45%), Gaps = 6/334 (1%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CKQ     A  + E M + G  P V  Y  +VS    +    EA     +M    D KPD
Sbjct: 274 CKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVK-RDLKPD 332

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V++   LI    K ++ D   ++ + M  L IE S   YN +I G+ +A   ++     S
Sbjct: 333 VFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIIS 392

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M  + GC PDI T N +++ Y   G +EK EK   +    GV  D  + N L K   + 
Sbjct: 393 FM-RTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKT 451

Query: 185 GMYDKMRS-VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
              DK  + V D M+   F  TV + NI+I+ F K   ++   E FK+M ++GM+ +++T
Sbjct: 452 HQLDKAFAFVSDHMEVGGFCDTV-SCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVT 510

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L++     G     + +  Q+ N+ +  +   +N ++    + G  ++   +F  M 
Sbjct: 511 YGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMI 570

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++   PD +TF T+I           A NL   M
Sbjct: 571 QKEVSPDTVTFNTLIYWLGKRSRAIEALNLFKDM 604



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 147/322 (45%), Gaps = 2/322 (0%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           +++ L+ G   +   Y+  +SA  QS  ++     + DM  +  C PD++  +I I    
Sbjct: 216 YDMALAKGFCLTPFTYSRWISALCQSNRIELVQELLVDMDKLG-CSPDIWACNIYIYYLC 274

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K +R     +++ +M   G     VTY T++ G    KKF E    +  MV+     PD+
Sbjct: 275 KQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRD-LKPDV 333

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
           F+  ++I     +  +++  +  +    + ++  +   N L   + RAG  DK   ++ F
Sbjct: 334 FSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISF 393

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M+     P +VTYNI++  +   G +EK E+  +KM+  G+ P+  +Y  L+    K   
Sbjct: 394 MRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQ 453

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + K  + +          DT   N +I A+ +   V+   ELF  M  +    D +T+ T
Sbjct: 454 LDKAFAFVSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGT 513

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           +I    ++G    A+ L  +M+
Sbjct: 514 LINGLFSVGYYNLAEELFEQML 535



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 148/312 (47%), Gaps = 4/312 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + ++A  L   ML+  ++ SV +Y AL+S + ++G +D+A+  I+ M++ +
Sbjct: 339 LIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRT-N 397

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C+PD+ TY+IL+         +  EK++ +M   G+     +YN ++ G  K  + ++ 
Sbjct: 398 GCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKA 457

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            +  S  +E GG   D  + N +I A+  +  ++   + + E    G++AD  T   L  
Sbjct: 458 FAFVSDHMEVGG-FCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLIN 516

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                G Y+    + + M      P V  YNI++    K GH ++ +  F  M  + + P
Sbjct: 517 GLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSP 576

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +++T+ +L+    K    ++  ++ + +    V  DT  F  +IS     G      E++
Sbjct: 577 DTVTFNTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVW 636

Query: 300 LTMKERHCVPDN 311
             M E   + D 
Sbjct: 637 EYMMENGIILDR 648



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/278 (24%), Positives = 120/278 (43%), Gaps = 5/278 (1%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y IL+    +  +FD + +   EM   G     V YN  I    K   F+ +E  +   +
Sbjct: 161 YRILLSGYVRAGKFDSVIETFDEMVMSGCREFGVDYNRYIGVLVKNCCFDLVEKYYDMAL 220

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
             G C    FT +  ISA   S  IE +++   + + +G   DI   NI      +    
Sbjct: 221 AKGFCLTP-FTYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRL 279

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                +++ M+ +   P VVTY  V+          +    +++M  R +KP+  +  +L
Sbjct: 280 PDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGAL 339

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +    K   + +   +  ++   D+ L    +N +IS + +AG ++K  ++   M+   C
Sbjct: 340 IFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGC 399

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            PD +T+  ++  Y  +GM E A+ L  KM    E SG
Sbjct: 400 EPDIVTYNILLNHYCTIGMMEKAEKLIRKM----ETSG 433



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 84/234 (35%), Gaps = 5/234 (2%)

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-GGCHPDIFTLNSMISAY 146
           L E+  L +E   +  N ++ G   +    E    F    ES  G     F +  ++S  
Sbjct: 78  LVELERLDVELDPIVVNLVVRGLSDS----ETAVRFYWWAESRPGFDHSQFAIAYLVSLL 133

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              GN   + ++       GV        IL   Y RAG +D +    D M         
Sbjct: 134 FMDGNFALLSEFLGRVKSQGVALHRSLYRILLSGYVRAGKFDSVIETFDEMVMSGCREFG 193

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V YN  I    K    + +E+Y+     +G      TY   +SA  ++  I  V  +L  
Sbjct: 194 VDYNRYIGVLVKNCCFDLVEKYYDMALAKGFCLTPFTYSRWISALCQSNRIELVQELLVD 253

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           ++      D    N  I    +   +    ++   M+ +   PD +T+ T++  
Sbjct: 254 MDKLGCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSG 307


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 155/320 (48%), Gaps = 8/320 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK      A  L+  M+S G+ P+V  Y+AL+S +   G L +A    N M  + + K
Sbjct: 206 GMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKM-ILENIK 264

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDVYT++IL+    K  +    + + A M   GI+ + VTY +++DGY   K+  + +S 
Sbjct: 265 PDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSI 324

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M + G  +PDI + N +I  +     +++    + E +   +  D+ T N L     
Sbjct: 325 LYTMSQRG-VNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLC 383

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G       ++D M  R   P ++TY+ +++   K   ++K      K+K +G++PN  
Sbjct: 384 KLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMY 443

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQ--VENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           TY  L+    K G +    +I     V+  ++ ++T  +  +I  +   G  ++   L  
Sbjct: 444 TYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNT--YTVMIHGFCNKGLFDEALALLS 501

Query: 301 TMKERHCVPDNITFATMIQA 320
            MK+  C+PD +T+  +I++
Sbjct: 502 KMKDNSCIPDAVTYEIIIRS 521



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 154/331 (46%), Gaps = 14/331 (4%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--CKPDVY 66
           Q  QA L  + +++ G +     Y  L+    + G   E  + ++ ++ V     +P+V 
Sbjct: 142 QIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVG---ETRAALDLLRRVDGNLVQPNVV 198

Query: 67  TYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            YS +I   C   H  D  + + +EM   GI  + VTY+ +I G+    + ++    F+ 
Sbjct: 199 MYSTIIDGMCKDKHVNDAFD-LYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNK 257

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYG 182
           M+      PD++T N ++  +   G   KM++    F +M   G+K ++ T   L   Y 
Sbjct: 258 MILEN-IKPDVYTFNILVDGFCKDG---KMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYC 313

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                +K +S++  M +R   P + +YNI+I+ F K   +++    FK+M H+ + P+ +
Sbjct: 314 LVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVV 373

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+    K G I     ++ ++ +  V  D   ++ I+ A  +   V+K   L   +
Sbjct: 374 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKL 433

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           K++   P+  T+  +I      G  E A N+
Sbjct: 434 KDQGIRPNMYTYTILIDGLCKGGRLEDAHNI 464



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 137/301 (45%), Gaps = 10/301 (3%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR--- 80
           G  P+   +T L+      G + +A    +D       + D   Y  LI    K      
Sbjct: 122 GYHPNTITFTTLIKGLCLKGQIHQAL-LFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRA 180

Query: 81  -FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             DL+ ++   +    ++ + V Y+TIIDG  K K   +    +S MV S G  P++ T 
Sbjct: 181 ALDLLRRVDGNL----VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMV-SKGISPNVVTY 235

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           +++IS +   G ++     +N+  L  +K D+ T NIL   + + G   + ++V   M K
Sbjct: 236 SALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMK 295

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           +   P VVTY  +++ +     + K +     M  RG+ P+  +Y  L+  + K   + +
Sbjct: 296 QGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDE 355

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
             ++ +++ +  +I D   +N +I    + G +    +L   M +R   PD IT+++++ 
Sbjct: 356 AMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILD 415

Query: 320 A 320
           A
Sbjct: 416 A 416



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 62/137 (45%)

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
           + P  +T+  +I+     G I +   +   +   G + + + Y +L+    K G      
Sbjct: 123 YHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAAL 182

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +LR+V+ + V  +   ++ II    +   V    +L+  M  +   P+ +T++ +I  +
Sbjct: 183 DLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 242

Query: 322 NALGMTEAAQNLENKMI 338
             +G  + A +L NKMI
Sbjct: 243 FTVGQLKDAIDLFNKMI 259



 Score = 39.3 bits (90), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  Q ++A  L   +   G++P++  YT L+    + G L++A +   D+  V     
Sbjct: 417 LCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDL-LVKGYNI 475

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII------DGYGKAKKFE 117
            V TY+++I        FD    +L++M        AVTY  II      D   KA+K  
Sbjct: 476 TVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKLR 535

Query: 118 EM 119
           EM
Sbjct: 536 EM 537


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 136/277 (49%), Gaps = 1/277 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEME 120
           +P+  TY+ +I       R      I+ EM   G I  +  TY T+I G+ K  + +E  
Sbjct: 69  RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 128

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M+  G   P+    N++I  Y + G ++    + +     GV   + T N+L  +
Sbjct: 129 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHA 188

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               G   +   +++ M  +   P V TYNI+I    K G+++K  E F+ M  RG++  
Sbjct: 189 LFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRAT 248

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY SL+ A SK G + + D +  +     +  D   +N +I+++  +G++++  E+  
Sbjct: 249 VVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMG 308

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M+++   PD++T+ T+++    LG  + A+ L ++M
Sbjct: 309 EMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 345



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 2/314 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P+   Y  +++ +   G +  A   + +M+      P+ YTY  +I    K  R D   
Sbjct: 69  RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 128

Query: 86  KILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           K+  EM   G ++  AV YN +I GY    K +        MVE G     + T N ++ 
Sbjct: 129 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERG-VAMTVATYNLLVH 187

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A    G   +  +   E    G+  D+ T NIL   + + G   K   + + M +R    
Sbjct: 188 ALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 247

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           TVVTY  +I    K G +++ ++ F +   RG++P+ + Y +L++++S +G I +   I+
Sbjct: 248 TVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIM 307

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++E   +  D   +N ++      G V++  +L   M +R   PD +T+ T+I  Y+  
Sbjct: 308 GEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMK 367

Query: 325 GMTEAAQNLENKMI 338
           G  + A  + N+M+
Sbjct: 368 GDVKDALRIRNEMM 381



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 158/344 (45%), Gaps = 15/344 (4%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V+ G CK  + ++A  +F+ ML+ G +KP   +Y AL+  Y   G LD A     D    
Sbjct: 114 VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL-LYRDRMVE 172

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
                 V TY++L+ +     R     +++ EM   G+     TYN +I+G+ K    ++
Sbjct: 173 RGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKK 232

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  M   G     + T  S+I A    G +++ +K ++E    G++ D+   N L 
Sbjct: 233 ALEIFENMSRRG-VRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI 291

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            S+  +G  D+   +M  M+K+   P  VTYN ++      G +++  +   +M  RG++
Sbjct: 292 NSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQ 351

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY---GQAGDVEKM 295
           P+ +TY +L+S YS  G +     I  ++ N         +N +I      GQ  D E M
Sbjct: 352 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 411

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
                 M E    PD+ T+ ++I+       TE  + ++++ +A
Sbjct: 412 ---VKEMVENGITPDDSTYISLIEGLT----TEDERAIDDERLA 448


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 126/249 (50%), Gaps = 2/249 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+ ++    + L E M+ DG +P+V  Y  L+ +YG++  L EA +  N M+ +  C+
Sbjct: 392 ILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMG-CE 450

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI    K    D+   +   M  +G+     TY+ +I+  GK+         
Sbjct: 451 PDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRL 510

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV+ G C P+I T N +I+    + N +   + Y +    G K D  T +I+ +  G
Sbjct: 511 FCEMVDQG-CVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEVLG 569

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  ++  +V   M++  + P    Y ++++ +GKAG++EK  E++  M   G+ PN  
Sbjct: 570 HCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLRAGLLPNVP 629

Query: 243 TYCSLVSAY 251
           T  SL+SA+
Sbjct: 630 TCNSLLSAF 638



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 136/280 (48%), Gaps = 1/280 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +TY+ ++    +   F  I K+L +M   G + + VTYN +I  YG+A    E  + F
Sbjct: 382 DGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVF 441

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M E G C PD  T  ++I  +  +G ++     Y     +G+  D  T +++    G+
Sbjct: 442 NQMQEMG-CEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGK 500

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G       +   M  +   P +VTYNI+I    KA + +   E ++ M++ G KP+ +T
Sbjct: 501 SGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVT 560

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  ++      G + + +++  ++  +  + D P +  ++  +G+AG+VEK  E + TM 
Sbjct: 561 YSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTML 620

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
               +P+  T  +++ A+  +     A NL   M+ +  N
Sbjct: 621 RAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLN 660



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 126/290 (43%), Gaps = 17/290 (5%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E+A  +F  M  +   P   VY  LV  +G++G +++A+   + M   + 
Sbjct: 565 MEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKAGNVEKAWEWYHTMLR-AG 623

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+V T + L+ +  + HR      +L  M  LG+  S  TY  ++    +A+   +M 
Sbjct: 624 LLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQTYTLLLSCCTEAQSPYDMG 683

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKADIQTLNILTK 179
                M  SG  HP    L SM +A  +  N+ + + K+ +  +    +     ++ +  
Sbjct: 684 FCCELMAVSG--HPAHAFLQSMPAAGPDGQNVRDHVSKFLDLMHSEDREGKRGLVDAVVD 741

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVT--------YNIVIETFGKA-GHIEKMEEYFK 230
              ++G+ ++  SV +   ++  +P  V          N+ + + G A   + +   +F+
Sbjct: 742 FLHKSGLKEEAGSVWEVAAQKNVYPDAVKEKSTCYWLINLHVMSDGTAVTALSRTLAWFR 801

Query: 231 K-MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           + M   G+ PN I    +V+ + +   +     + + V+    +   PFF
Sbjct: 802 RQMLASGVGPNRI---DIVTGWGRRSRVTGSSLVRQAVQELLHVFSFPFF 848


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 156/340 (45%), Gaps = 3/340 (0%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK  + E A  + + M   G  P V  +  ++  +   G +D A     ++   +
Sbjct: 50  VISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDN 109

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +CKP + TY+ILI++       D   K+L EM   G+E    TYN I  G  K  K +  
Sbjct: 110 NCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDR- 168

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F   + S GC PD+ T N ++ A  N G  ++ EKW +E    G + ++ T +IL  
Sbjct: 169 AFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILIS 228

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           S  R G  ++  +++  M+++   P    Y+ +I  F + G ++   E+   M   G  P
Sbjct: 229 SLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLP 288

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + + Y ++++A  K G       I  +++      +   +N ++SA   +GD  +   + 
Sbjct: 289 DIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMI 348

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             M  +   PD IT+ ++I      GM + A  L   M++
Sbjct: 349 SQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLS 388



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 155/341 (45%), Gaps = 5/341 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L + MLS GL+P    Y  +     + G +D AF  +  + S   CKPDV TY+I
Sbjct: 132 DEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNS-RGCKPDVITYNI 190

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++     ++D  EK ++E+   G E + VTY+ +I    +  K EE  +    M E G
Sbjct: 191 LLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKG 250

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD +  + +I+A+   G ++   ++ +     G   DI   N +  +  + G  D  
Sbjct: 251 -LTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHA 309

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   + +    P V +YN ++     +G   +      +M  +G+ P+ ITY SL+S 
Sbjct: 310 VEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISC 369

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G++ +   +L  + +     +   +  ++    +A  ++   E+   M E  C P+
Sbjct: 370 LCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPN 429

Query: 311 NITFATMIQAYNALGMTEAAQNLENK---MIAMKENSGKKL 348
             T+  +I+     G    A  L N    M A+ E+S K+L
Sbjct: 430 ETTYTLLIEGIGFSGSRTQAMELANSLYIMNAISEDSFKRL 470



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 151/318 (47%), Gaps = 2/318 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M++   +P V + T L+  +  S  +D+A   +  ++     KPDV+ Y+ +I    K +
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG--KPDVFAYNAVISGFCKAN 58

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R +  + +L  M   G     VT+N +I  +    K +     F  +++   C P + T 
Sbjct: 59  RIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITY 118

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
             +I AY   G I++  K  +E    G++ D  T N++T+   + G  D+    +  +  
Sbjct: 119 TILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNS 178

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R   P V+TYNI++      G  ++ E++  ++  RG +PN +TY  L+S+  + G I +
Sbjct: 179 RGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEE 238

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
             ++++ ++   +  D   ++ +I+A+ + G ++   E    M     +PD + + T++ 
Sbjct: 239 SVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMA 298

Query: 320 AYNALGMTEAAQNLENKM 337
           A    G  + A  +  K+
Sbjct: 299 ALCKNGNGDHAVEIFGKL 316


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 163/341 (47%), Gaps = 10/341 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  Q ++A+ +   M   G+ P V  YT L+    + G    A   +N M    + +
Sbjct: 293 GLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGE-E 351

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P   TY++L+    K        KIL  M   G +   VTYNT++ G     K +E    
Sbjct: 352 PSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKL 411

Query: 123 FSAMVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F++M ++  C  P++FT N +I      G + K  K + +    G   ++ T N+L    
Sbjct: 412 FNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGC 471

Query: 182 GRAGMYDKMRSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +AG   K++  M+  ++     F P   TY+I+I+ F K   +   +  F +M+  G+ 
Sbjct: 472 LKAG---KIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLN 528

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P    Y +L+++  K G + +  S+ +++ N++   D   FN +I    +AGD + + EL
Sbjct: 529 PALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKEL 588

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            + M E    PD +TF+T+I   + LG  + A++   +M+A
Sbjct: 589 QMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVA 629



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 158/335 (47%), Gaps = 8/335 (2%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDV 65
           ++P+    +  ++L  G   +V +   ++    ++G + EA   I +M  KSVS   PD+
Sbjct: 123 QKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVS---PDI 179

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            +Y+ LI    K  +      +L EM   G   ++VT  T++DG  K  + +E      A
Sbjct: 180 VSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEA 239

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M +  G   D+    ++IS + N+GN+++ ++ ++E    G+ A++ T + L     R G
Sbjct: 240 M-KKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLG 298

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            + +  +V++ M +    P VVTY  +I+   K G      +    M  +G +P+++TY 
Sbjct: 299 QWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYN 358

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KE 304
            L+S   K GL++    ILR +       D   +N ++      G V++  +LF +M   
Sbjct: 359 VLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 418

Query: 305 RHCV-PDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +C+ P+  TF  +I      G    A  +  KM+
Sbjct: 419 ENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMV 453



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 149/327 (45%), Gaps = 4/327 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ ML  G+  +V  Y+ LV    + G   EA + +N M       PDV TY+ LI   
Sbjct: 271 LFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAE-HGIHPDVVTYTGLIDGL 329

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R      +L  M   G E S VTYN ++ G  K     +       M+E G    D
Sbjct: 330 CKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK-KAD 388

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEF--NLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           + T N+++    + G +++  K +N    N   ++ ++ T N+L     + G   K   +
Sbjct: 389 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 448

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
              M K+     +VTYN+++    KAG I++  E +K++   G  PNS TY  L+  + K
Sbjct: 449 HRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCK 508

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
             ++     +  ++    +      +N ++++  + G +E+   LF  M   +C PD I+
Sbjct: 509 MRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIIS 568

Query: 314 FATMIQAYNALGMTEAAQNLENKMIAM 340
           F TMI      G  +  + L+ KM+ M
Sbjct: 569 FNTMIDGTLKAGDFQFVKELQMKMVEM 595



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 140/304 (46%), Gaps = 2/304 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC-KPDVYTYSILIKS 74
           +  +M+  G K  V  Y  L+      G +DEA    N M    +C +P+V+T+++LI  
Sbjct: 376 ILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGG 435

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             K  R     KI  +M   G   + VTYN ++ G  KA K +E    +  +++ G   P
Sbjct: 436 LCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFV-P 494

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           + FT + +I  +     +   +  + E    G+   +   N L  S  + G  ++ +S+ 
Sbjct: 495 NSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLF 554

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             M      P ++++N +I+   KAG  + ++E   KM   G++P+++T+ +L++  SK 
Sbjct: 555 QEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKL 614

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G + +  S L ++  S    D   ++ ++      GD  ++  L   M  +  V D    
Sbjct: 615 GELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIV 674

Query: 315 ATMI 318
           +T++
Sbjct: 675 STIL 678



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/280 (17%), Positives = 116/280 (41%), Gaps = 1/280 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P   T + L+ +  +   + L   +   M+++ +  S  + + +I+ +  A+K  ++   
Sbjct: 72  PSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQK-PQLGFG 130

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              +V   G   ++F +N ++     +G + +      E     V  DI + N L     
Sbjct: 131 VVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLC 190

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A    +   ++  M+    FP  VT   +++   K G +++  E  + MK +G   + +
Sbjct: 191 KAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVV 250

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y +L+S +   G + +   +  ++    +  +   ++C++    + G  ++   +   M
Sbjct: 251 LYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAM 310

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
            E    PD +T+  +I      G    A +L N M+   E
Sbjct: 311 AEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGE 350


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 156/329 (47%), Gaps = 4/329 (1%)

Query: 2   VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           VM G+ K  E  S L E M++ G +P +  Y  L+    + G L  A   +N+M S   C
Sbjct: 365 VMSGQLK--EAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEM-SRRGC 421

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +P+V TY+IL+    K    +    +L EMS  G+  ++V YN +I    + +K     +
Sbjct: 422 EPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALN 481

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             S M  + GC PD+FT NS+I        I++  + ++   L G  A+  T N L  + 
Sbjct: 482 LLSEMC-TKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHAL 540

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R G + K  ++++ M  R      +TYN +I+ F K G+IEK  E +++M   G+  ++
Sbjct: 541 LRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADT 600

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           I+   +++   K G +      LR   N   + D   +N +++   + G +++   LF  
Sbjct: 601 ISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDR 660

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAA 330
           ++     PD  T+ T I      GM   A
Sbjct: 661 LQVEGVRPDAFTYNTFISWQCKEGMVNDA 689



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 152/340 (44%), Gaps = 11/340 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++ G C  P+ A+ +F  MLS G+ P+V  +  ++ A      +D A S + DM     
Sbjct: 192 ILVTGNC--PQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTK-HG 248

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P+   Y  LI + ++ ++     K+L EM  +G      T+N +I G  K  K  +  
Sbjct: 249 CVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDAT 308

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA-DIQTLNILTK 179
                M+  G  +PD  T   ++      G + +  K      L+ +   +   LN L  
Sbjct: 309 KLVDRMLLRGF-YPDNMTYGFLLHGLCRIGKLNEARKI-----LIKIPCPNNAILNTLIN 362

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            Y  +G   + +S ++     F F P + TYNI++    K G +    +   +M  RG +
Sbjct: 363 GYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCE 422

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN ITY  LV+   KAGL+ +   +L ++    + +++  +NC+I A  +   V     L
Sbjct: 423 PNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNL 482

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              M  + C PD  T+ ++I     +   + A  L + M+
Sbjct: 483 LSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNML 522



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 154/387 (39%), Gaps = 42/387 (10%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +VM   C   + + A  L   M   G  P+  VY  L+ A  Q   + EA   + +M  V
Sbjct: 223 IVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEM-FV 281

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY--------------- 103
             C PDV T++ +I    K ++     K++  M   G     +TY               
Sbjct: 282 MGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNE 341

Query: 104 ----------------NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
                           NT+I+GY  + + +E +S  +  + + G  PDIFT N ++    
Sbjct: 342 ARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLC 401

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G++       NE +  G + ++ T  IL     +AG+ ++   V+  M  R      V
Sbjct: 402 KEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSV 461

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            YN +I    +   +        +M  +G KP+  TY SL+    K   + ++D   R  
Sbjct: 462 IYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCK---VDRIDEAFRLF 518

Query: 268 EN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            N      + +   +N +I A  + G  +K   L   M  R C  D IT+  +I+A+  +
Sbjct: 519 HNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKV 578

Query: 325 GMTEAAQNLENKMIAMKENSGKKLIQC 351
           G  E    L  +MI   +  G   I C
Sbjct: 579 GNIEKGLELYEQMIM--DGLGADTISC 603



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/323 (20%), Positives = 139/323 (43%), Gaps = 10/323 (3%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+     ++  ++  YG++G   +A   + DM++V  C+P   +Y ++++     +
Sbjct: 138 MKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGN 197

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIF 137
              +   +  +M   G+  +  T+  ++        F E++S+ S +  +   GC P+  
Sbjct: 198 CPQVATNVFYDMLSKGVSPTVFTFGIVMKALCM---FNEVDSACSLLRDMTKHGCVPNSI 254

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
              ++I A      + +  K   E  +MG   D+QT N +     +         ++D M
Sbjct: 255 VYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRM 314

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
             R F+P  +TY  ++    + G + +  +   K+      PN+    +L++ Y  +G +
Sbjct: 315 LLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPC----PNNAILNTLINGYVMSGQL 370

Query: 258 MKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
            +  S L +   N     D   +N ++    + G +    +L   M  R C P+ IT+A 
Sbjct: 371 KEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAI 430

Query: 317 MIQAYNALGMTEAAQNLENKMIA 339
           ++      G+ E A  + ++M A
Sbjct: 431 LVNGLCKAGLLEEAGLVLHEMSA 453



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 4/213 (1%)

Query: 128 ESGGCHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           + G CH  D++ +   I+  G  G  + ++K   +    G+        I+ K YG+AG 
Sbjct: 105 QKGYCHTFDVYYV--FINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQ 162

Query: 187 YDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             + +R ++D        PT  +Y++V+E        +     F  M  +G+ P   T+ 
Sbjct: 163 PGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFG 222

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            ++ A      +    S+LR +     + ++  +  +I A  Q   V +  +L   M   
Sbjct: 223 IVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVM 282

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            C+PD  TF  +I     +     A  L ++M+
Sbjct: 283 GCMPDVQTFNDVIHGLCKVNKIHDATKLVDRML 315


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 156/329 (47%), Gaps = 4/329 (1%)

Query: 2   VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           VM G+ K  E  S L E M++ G +P +  Y  L+    + G L  A   +N+M S   C
Sbjct: 365 VMSGQLK--EAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEM-SRRGC 421

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +P+V TY+IL+    K    +    +L EMS  G+  ++V YN +I    + +K     +
Sbjct: 422 EPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALN 481

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             S M  + GC PD+FT NS+I        I++  + ++   L G  A+  T N L  + 
Sbjct: 482 LLSEMC-TKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHAL 540

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R G + K  ++++ M  R      +TYN +I+ F K G+IEK  E +++M   G+  ++
Sbjct: 541 LRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADT 600

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           I+   +++   K G +      LR   N   + D   +N +++   + G +++   LF  
Sbjct: 601 ISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDR 660

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAA 330
           ++     PD  T+ T I      GM   A
Sbjct: 661 LQVEGVRPDAFTYNTFISWQCKEGMVNDA 689



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 152/340 (44%), Gaps = 11/340 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++ G C  P+ A+ +F  MLS G+ P+V  +  ++ A      +D A S + DM     
Sbjct: 192 ILVTGNC--PQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTK-HG 248

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P+   Y  LI + ++ ++     K+L EM  +G      T+N +I G  K  K  +  
Sbjct: 249 CVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDAT 308

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA-DIQTLNILTK 179
                M+  G  +PD  T   ++      G + +  K      L+ +   +   LN L  
Sbjct: 309 KLVDRMLLRGF-YPDNMTYGFLLHGLCRIGKLNEARKI-----LIKIPCPNNAILNTLIN 362

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            Y  +G   + +S ++     F F P + TYNI++    K G +    +   +M  RG +
Sbjct: 363 GYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCE 422

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN ITY  LV+   KAGL+ +   +L ++    + +++  +NC+I A  +   V     L
Sbjct: 423 PNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNL 482

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              M  + C PD  T+ ++I     +   + A  L + M+
Sbjct: 483 LSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNML 522



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 154/387 (39%), Gaps = 42/387 (10%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +VM   C   + + A  L   M   G  P+  VY  L+ A  Q   + EA   + +M  V
Sbjct: 223 IVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEM-FV 281

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY--------------- 103
             C PDV T++ +I    K ++     K++  M   G     +TY               
Sbjct: 282 MGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNE 341

Query: 104 ----------------NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
                           NT+I+GY  + + +E +S  +  + + G  PDIFT N ++    
Sbjct: 342 ARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLC 401

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G++       NE +  G + ++ T  IL     +AG+ ++   V+  M  R      V
Sbjct: 402 KEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSV 461

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            YN +I    +   +        +M  +G KP+  TY SL+    K   + ++D   R  
Sbjct: 462 IYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCK---VDRIDEAFRLF 518

Query: 268 EN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            N      + +   +N +I A  + G  +K   L   M  R C  D IT+  +I+A+  +
Sbjct: 519 HNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKV 578

Query: 325 GMTEAAQNLENKMIAMKENSGKKLIQC 351
           G  E    L  +MI   +  G   I C
Sbjct: 579 GNIEKGLELYEQMIM--DGLGADTISC 603



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/323 (20%), Positives = 139/323 (43%), Gaps = 10/323 (3%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G+     ++  ++  YG++G   +A   + DM++V  C+P   +Y ++++     +
Sbjct: 138 MKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGN 197

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIF 137
              +   +  +M   G+  +  T+  ++        F E++S+ S +  +   GC P+  
Sbjct: 198 CPQVATNVFYDMLSKGVSPTVFTFGIVMKALCM---FNEVDSACSLLRDMTKHGCVPNSI 254

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
              ++I A      + +  K   E  +MG   D+QT N +     +         ++D M
Sbjct: 255 VYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRM 314

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
             R F+P  +TY  ++    + G + +  +   K+      PN+    +L++ Y  +G +
Sbjct: 315 LLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPC----PNNAILNTLINGYVMSGQL 370

Query: 258 MKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
            +  S L +   N     D   +N ++    + G +    +L   M  R C P+ IT+A 
Sbjct: 371 KEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAI 430

Query: 317 MIQAYNALGMTEAAQNLENKMIA 339
           ++      G+ E A  + ++M A
Sbjct: 431 LVNGLCKAGLLEEAGLVLHEMSA 453



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 4/213 (1%)

Query: 128 ESGGCHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           + G CH  D++ +   I+  G  G  + ++K   +    G+        I+ K YG+AG 
Sbjct: 105 QKGYCHTFDVYYV--FINKLGAIGKFKLIDKLLMQMKEEGIVFRESIFMIIMKHYGKAGQ 162

Query: 187 YDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             + +R ++D        PT  +Y++V+E        +     F  M  +G+ P   T+ 
Sbjct: 163 PGQAIRLLLDMRAVYLCEPTFKSYDLVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFG 222

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            ++ A      +    S+LR +     + ++  +  +I A  Q   V +  +L   M   
Sbjct: 223 IVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVM 282

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            C+PD  TF  +I     +     A  L ++M+
Sbjct: 283 GCMPDVQTFNDVIHGLCKVNKIHDATKLVDRML 315


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 146/334 (43%), Gaps = 37/334 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K KQ + A  L   M  DG+ P V  Y +L+S    SG   +A   ++ M    +  P
Sbjct: 196 LCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTK-REIYP 254

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV+T++ LI +C K  R    E+   EM    ++   VTY+ +I G     + +E E  F
Sbjct: 255 DVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMF 314

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV S GC PD+ T + +I+ Y  S  +E   K + E                      
Sbjct: 315 GFMV-SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCE---------------------- 351

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
                        M +R      VTY I+I+ + +AG +   EE F++M   G+ PN IT
Sbjct: 352 -------------MSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIIT 398

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+      G I K   IL  ++ + +  D   +N II    +AG+V    +++ ++ 
Sbjct: 399 YNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLN 458

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +  +PD  T+ TM+      G+   A  L  KM
Sbjct: 459 CQGLMPDIWTYTTMMLGLYKKGLRREADALFRKM 492



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 148/331 (44%), Gaps = 3/331 (0%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  +   L F ++    L PS+  ++ L+SA  +    D        M+ +     ++ T
Sbjct: 61  KLDDSLDLFFHMVQCRPL-PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLG-IPHNLCT 118

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
            +IL+    +  +  L    L +M  LG E S VT+ ++++G+ +  +  +    F  MV
Sbjct: 119 CNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMV 178

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
             G   P++   N++I     S  ++      N     G+  D+ T N L      +G +
Sbjct: 179 GMGY-KPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRW 237

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
                ++  M KR  +P V T+N +I+   K G + + EE++++M  R + P+ +TY  L
Sbjct: 238 SDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLL 297

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +        + + + +   + +     D   ++ +I+ Y ++  VE   +LF  M +R  
Sbjct: 298 IYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGV 357

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           V + +T+  +IQ Y   G    A+ +  +M+
Sbjct: 358 VRNTVTYTILIQGYCRAGKLNVAEEIFRRMV 388



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/277 (19%), Positives = 112/277 (40%), Gaps = 36/277 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  +S L+ + +K  ++D++  +  +M  LGI  +  T N +++ + +  +     S 
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M++ G   P I T  S+++ +     +      +++   MG K              
Sbjct: 139 LGKMIKLGH-EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYK-------------- 183

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                                P VV YN +I+   K+  ++   +   +M+  G+ P+ +
Sbjct: 184 ---------------------PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVV 222

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+S    +G       ++  +   ++  D   FN +I A  + G V +  E +  M
Sbjct: 223 TYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEM 282

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             R   PD +T++ +I         + A+ +   M++
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVS 319



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 14/232 (6%)

Query: 115 KFEEMESSFSAMVESGGCHP--DIFTLNSMISAYGNSGNIEKMEKW------YNEFNLMG 166
           +F +++ S         C P   I   + ++SA      I KM+K+      + +  ++G
Sbjct: 58  RFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSA------ISKMKKYDVVIYLWEQMQMLG 111

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           +  ++ T NIL   + R        S +  M K    P++VT+  ++  F +   +    
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDAL 171

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
             F +M   G KPN + Y +++    K+  +     +L ++E   +  D   +N +IS  
Sbjct: 172 YMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGL 231

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +G       +   M +R   PD  TF  +I A    G    A+    +MI
Sbjct: 232 CSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMI 283


>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic [Vitis vinifera]
          Length = 701

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 139/276 (50%), Gaps = 2/276 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V  Y++ +K   K    D  EK+  EM   G++   +T++TII     +    +    F
Sbjct: 175 EVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWF 234

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E G CHPD  T ++MI AYG +GN++   K Y+       + D  T + L + YG 
Sbjct: 235 EKMPEFG-CHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGM 293

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G +D   +V + M+     P +V YN +++  G+A    + +  +K+M + G++P+  T
Sbjct: 294 SGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGT 353

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+ AY +A        + ++++   + L    +N +++     G  E+   +F  MK
Sbjct: 354 YAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMK 413

Query: 304 ER-HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              +C+PD+ TF+++I  Y+  G    A+ + N M+
Sbjct: 414 SSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAML 449



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 156/344 (45%), Gaps = 8/344 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC+  ++A  LF+ ML  G+KP    ++ ++S    S L ++A      M     C PD 
Sbjct: 188 KCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFG-CHPDD 246

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TYS +I +  +    D+  K+             VT++T+I  YG +  F+   + +  
Sbjct: 247 VTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEE 306

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M ++ G  P++   N+++ A G +    + +  Y E    G++    T   L ++YGRA 
Sbjct: 307 M-KALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRAR 365

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITY 244
             +    V   M+++    +VV YN ++      G+ E+    F+ MK  G   P+S T+
Sbjct: 366 YAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTF 425

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL++ YS +G + + +++L  +  +    +      +I  YG+A   +++   F  + E
Sbjct: 426 SSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLE 485

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 348
               PD+     M+       MT++ +    K+I   + +  KL
Sbjct: 486 LDITPDDRFCGCMLNV-----MTQSPKEELGKLIDCIDKANPKL 524



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 95/183 (51%), Gaps = 9/183 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           +G+ K+P QA  +++ M ++GL+PS   Y AL+ AYG++   ++A     +MK     + 
Sbjct: 326 MGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKE-KGLEL 384

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMES 121
            V  Y+ L+  C      +    I  +M   G  C   + T++++I  Y  + K  E E+
Sbjct: 385 SVVLYNTLLAMCADVGYTEEAAAIFEDMKSSG-NCMPDSWTFSSLITIYSCSGKVSEAEA 443

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ----TLNIL 177
             +AM+E+ G  P+IF L S+I  YG +   +++ + ++    + +  D +     LN++
Sbjct: 444 MLNAMLEA-GFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGCMLNVM 502

Query: 178 TKS 180
           T+S
Sbjct: 503 TQS 505



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 79/147 (53%), Gaps = 3/147 (2%)

Query: 196 FMQKRFFFPT--VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           F +KR   P+  V+ YN+ ++ F K  ++++ E+ F +M  RG+KP++IT+ +++S    
Sbjct: 165 FFRKRLK-PSREVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARV 223

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           + L  K      ++       D   ++ +I AYG+AG+V+   +L+   +      D +T
Sbjct: 224 SSLPNKAVEWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVT 283

Query: 314 FATMIQAYNALGMTEAAQNLENKMIAM 340
           F+T+I+ Y   G  +   N+  +M A+
Sbjct: 284 FSTLIRIYGMSGNFDGCLNVYEEMKAL 310



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 94/228 (41%), Gaps = 36/228 (15%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    + A  L++   ++  +     ++ L+  YG SG  D   +   +MK++   KP+
Sbjct: 257 GRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALG-VKPN 315

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK---------- 114
           +  Y+ L+ +  +  R    + I  EM+  G++ S  TY  ++  YG+A+          
Sbjct: 316 LVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYK 375

Query: 115 -------------------------KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
                                      EE  + F  M  SG C PD +T +S+I+ Y  S
Sbjct: 376 EMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCS 435

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           G + + E   N     G + +I  L  L + YG+A   D++    D +
Sbjct: 436 GKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRL 483


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 158/319 (49%), Gaps = 3/319 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +  VM +  + P   VYT L+S +G+SG +   +   ++MK      PD  TY+ +
Sbjct: 340 EAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKR-KKIVPDFVTYTSM 398

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    +  +     K+ +EM   G++   VTY  +IDGY KA + +E  S  + MVE G 
Sbjct: 399 IHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKG- 457

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P++ T  +++      G ++   +  +E +  G++ ++ T N L     + G  ++  
Sbjct: 458 LTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAV 517

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +M+ M    FFP  +TY  +++ + K G + K  E  + M  +G++P  +T+  L++ +
Sbjct: 518 KLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGF 577

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
             +G++   + +++ + +  ++ +   FN ++  Y    ++    E++  M  +  VPD 
Sbjct: 578 CMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDT 637

Query: 312 ITFATMIQAY-NALGMTEA 329
            T+  +I+ +  A  M EA
Sbjct: 638 NTYNILIKGHCKARNMKEA 656



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 155/338 (45%), Gaps = 5/338 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +  LGK K  E  SLL + M   G  P V  Y+ +V  Y Q   L +    + +++    
Sbjct: 262 LCQLGKVK--EAHSLLIQ-MEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQR-KG 317

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KP+ YTY+ +I    K  R    E++L  M    I    V Y T+I G+GK+       
Sbjct: 318 LKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEY 377

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M +     PD  T  SMI     +G + +  K ++E    G+K D  T   L   
Sbjct: 378 KLFDEM-KRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDG 436

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y +AG   +  S+ + M ++   P VVTY  +++   K G ++   E   +M  +G++PN
Sbjct: 437 YCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPN 496

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY +L++   K G I +   ++ +++ +    DT  +  I+ AY + G++ K  EL  
Sbjct: 497 VCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLR 556

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            M ++   P  +TF  ++  +   GM E  + L   M+
Sbjct: 557 IMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWML 594



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 2/292 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  MLS GLKP    YTAL+  Y ++G + EAFS  N M       P+V TY+ L
Sbjct: 410 EARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVE-KGLTPNVVTYTAL 468

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    K    D+  ++L EMS  G++ +  TYN +I+G  K    E+       M +  G
Sbjct: 469 VDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM-DLAG 527

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD  T  +++ AY   G + K  +        G++  I T N+L   +  +GM +   
Sbjct: 528 FFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGE 587

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++ +M  +   P   T+N +++ +    ++    E +K M  +G+ P++ TY  L+  +
Sbjct: 588 RLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGH 647

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
            KA  + +   + +++      L    +N +I  + +    E+  +LF  M+
Sbjct: 648 CKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMR 699



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 148/327 (45%), Gaps = 3/327 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +A  LF+ +L+ G+  SVD     ++    S   +  AF    +   V  C   V +Y+I
Sbjct: 199 EAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFREYSEVGVCWNTV-SYNI 257

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    +  +      +L +M + G     V+Y+ I+DGY + ++  ++      + +  
Sbjct: 258 ILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEEL-QRK 316

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+ +T NS+IS    +G + + E+         +  D      L   +G++G     
Sbjct: 317 GLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVE 376

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + D M+++   P  VTY  +I    +AG + +  + F +M  +G+KP+ +TY +L+  
Sbjct: 377 YKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDG 436

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y KAG + +  S+  Q+    +  +   +  ++    + G+V+   EL   M E+   P+
Sbjct: 437 YCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPN 496

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
             T+  +I     +G  E A  L  +M
Sbjct: 497 VCTYNALINGLCKVGNIEQAVKLMEEM 523



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 102/181 (56%)

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
           + E++ +GV  +  + NI+     + G   +  S++  M+ R   P VV+Y+++++ + +
Sbjct: 240 FREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQ 299

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
              + K+ +  ++++ +G+KPN  TY S++S   K G +++ + +LR ++N  +  D   
Sbjct: 300 VEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVV 359

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  +IS +G++G+V    +LF  MK +  VPD +T+ +MI      G    A+ L ++M+
Sbjct: 360 YTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEML 419

Query: 339 A 339
           +
Sbjct: 420 S 420



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 36/165 (21%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI------- 52
           +M   CK  E  +A  L  +ML  GL+P++  +  L++ +  SG+L++    I       
Sbjct: 538 IMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKG 597

Query: 53  ------------------NDMKSVSD---------CKPDVYTYSILIKSCTKFHRFDLIE 85
                             N+M++  +           PD  TY+ILIK   K        
Sbjct: 598 IMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAW 657

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            +  EM   G   +A +YN++I G+ K KKFEE    F  M   G
Sbjct: 658 FLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHG 702


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 155/341 (45%), Gaps = 6/341 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C+  +  +A   F+ M S G  P V  Y  L+ A  + G + EA+     M  ++
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTM-DMA 179

Query: 60  DCK--PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           D K  PD+ TY+ LI    +  + D   K+  ++   G     VTYN+I+ G  +    +
Sbjct: 180 DRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMD 239

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E E  F  MV+SG C P+  T + ++S +   GN+ +  + Y E        D+   N +
Sbjct: 240 EAEEMFKKMVDSG-CAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAV 298

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                +A   D    V++ M K    P VVTYNI+++   K   ++K  E F  M   G 
Sbjct: 299 IDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGC 358

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P+ ++Y  +++   K   +     +  ++    ++ D   FN ++    +AG +++  +
Sbjct: 359 APDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKD 418

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           L   M E + +PD +T  T++        T+ A  L   M+
Sbjct: 419 LLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMV 459



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 149/341 (43%), Gaps = 6/341 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  +  +A  + E M   G+ P V  YT +V    ++G +DEA    + M    
Sbjct: 16  IISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIE-R 74

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C  +   Y+ LI    K    +   K+L EM+  G E   +TYNTI+ G  +  K  E 
Sbjct: 75  GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEA 134

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG--VKADIQTLNIL 177
           +  F +M  S G  PD+   N ++ A    G + +    +   ++    V  D+ T N L
Sbjct: 135 KQFFDSM-PSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTL 193

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              + R    D+   +   +  + + P  VTYN ++    +  ++++ EE FKKM   G 
Sbjct: 194 IDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGC 253

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            PN  TY  ++S + + G + +   +  ++       D    N +I    +A  V+   +
Sbjct: 254 APNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHK 313

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +   M +   VPD +T+  ++       + + A  L + M+
Sbjct: 314 VLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMV 354



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 121/266 (45%), Gaps = 3/266 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +PDV TYS +I    K  +     +++ EM+  G+     TY  I+D   +A K +E + 
Sbjct: 7   EPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADE 66

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M+E  GC  +    N++I+      NIE+  K   E    G + D  T N +    
Sbjct: 67  LFHKMIER-GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGL 125

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK--KMKHRGMKP 239
            R G   + +   D M  R + P VV YN +++   K G + +    FK   M  R + P
Sbjct: 126 CRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAP 185

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + ITY +L+  + +     +   + + V     + DT  +N I+    +  ++++  E+F
Sbjct: 186 DLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMF 245

Query: 300 LTMKERHCVPDNITFATMIQAYNALG 325
             M +  C P+  T++ ++  +  +G
Sbjct: 246 KKMVDSGCAPNGATYSIVLSGHCRVG 271



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 151/345 (43%), Gaps = 9/345 (2%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++LG  ++   ++A  +F+ M+  G  P+   Y+ ++S + + G +        +M    
Sbjct: 228 ILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTE-K 286

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PDV   + +I    K  + D   K+L EMS +G     VTYN ++DG  K    ++ 
Sbjct: 287 RFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKA 346

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              FS MV++G C PDI + + +++    +  +      ++      +  D+ T NIL  
Sbjct: 347 HELFSTMVDNG-CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMD 405

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              +AG  D+ + ++D M +    P  VT   ++    +    ++    F+ M  +G   
Sbjct: 406 GLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVA 465

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSD--VILDTPFFNCIISAYGQAGDVEKMGE 297
           + + +  +++   + G + +     + +  SD     D   +  +++A  +AG V++  +
Sbjct: 466 DVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVD 525

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
            F  M    C PD + + T++      G    A  L     AMKE
Sbjct: 526 YFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQ---AMKE 567



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 125/281 (44%), Gaps = 16/281 (5%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVS 59
           ML K K+ + A  + E M   G  P V  Y  L+    ++ L+D+A   FST+ D    +
Sbjct: 301 MLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD----N 356

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C PD+ +YS+++    K ++      +   M    +    VT+N ++DG  KA K +E 
Sbjct: 357 GCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEA 416

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +     M E     PD  T  +++         ++  + +      G  AD+   NI+  
Sbjct: 417 KDLLDVMSEHN-VLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLA 475

Query: 180 SYGRAGMYDKMRSVMDFMQKRF-----FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
              R G   K+   + F +        F P VVTY  ++    +AG +++  +YF++M  
Sbjct: 476 GLCREG---KLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTG 532

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
            G  P+ + Y +L++   K G  ++ D + + ++    + D
Sbjct: 533 SGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 98/211 (46%), Gaps = 2/211 (0%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD+ T +++IS    +G + +  +   E    GV  D+ T  I+     RAG  D+ 
Sbjct: 5   GFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEA 64

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M +R      V YN +I    K  +IE+  +  ++M  +G +P++ITY +++S 
Sbjct: 65  DELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSG 124

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK--ERHCV 308
             + G + +       + +     D   +N ++ A  + G V +   LF TM   +R   
Sbjct: 125 LCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVA 184

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           PD IT+ T+I  +  +  T+ A  L   +IA
Sbjct: 185 PDLITYNTLIDGFCRVEKTDEAMKLFKDVIA 215



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 115/250 (46%), Gaps = 3/250 (1%)

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M+  G E   VTY+TII G  K  K  E       M E  G +PD+ T   ++     +G
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEK-GVNPDVATYTIIVDRLCRAG 59

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            +++ ++ +++    G  A+    N L     +    ++   +++ M  + + P  +TYN
Sbjct: 60  KVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYN 119

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            ++    + G + + +++F  M  RG  P+ + Y  L+ A  K G + +   + + ++ +
Sbjct: 120 TILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMA 179

Query: 271 D--VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
           D  V  D   +N +I  + +    ++  +LF  +  +  +PD +T+ +++         +
Sbjct: 180 DRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMD 239

Query: 329 AAQNLENKMI 338
            A+ +  KM+
Sbjct: 240 EAEEMFKKMV 249


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 145/291 (49%), Gaps = 2/291 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           AS L   M+   + P+V  ++AL+ A+ + G L EA    ++M   S   PD++TYS LI
Sbjct: 312 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLI 370

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                  R D  + +   M       + VTY+T+I G+ KAK+ EE    F  M + G  
Sbjct: 371 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRG-L 429

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             +  T  ++I  +  + + +  +  + +   +GV  +I T NIL     + G   K   
Sbjct: 430 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMV 489

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V +++Q+    P + TYNI+IE   KAG +E   E F  +  +G+ PN I Y +++S + 
Sbjct: 490 VFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFC 549

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + G   + DS+L++++    + ++  +N +I A  + GD E   EL   M+
Sbjct: 550 RKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMR 600



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 161/400 (40%), Gaps = 72/400 (18%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+   A  L + M+  G KP    +T L+          EA + ++ M     C+PD+ T
Sbjct: 167 KRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ-RGCQPDLVT 225

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y  ++    K    DL   +L +M    IE   V YNTIIDG  K K  ++  + F+ M 
Sbjct: 226 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM- 284

Query: 128 ESGGCHPDIFTLNSMIS-----------------------------------AYGNSGNI 152
           ++ G  PD+FT +S+IS                                   A+   G +
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
            + EK Y+E     +  DI T + L   +      D+ + + + M  +  FP VVTY+ +
Sbjct: 345 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGM----------------------------------- 237
           I+ F KA  +E+  E F++M  RG+                                   
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            PN +TY  L+    K G + K   +   ++ S +  D   +N +I    +AG VE   E
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE 524

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           LF  +  +   P+ I + TMI  +   G  E A +L  KM
Sbjct: 525 LFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 158/334 (47%), Gaps = 2/334 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K  + A  LF  M + G++P V  Y++L+S     G   +A   ++DM       P
Sbjct: 268 LCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 326

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V T+S LI +  K  +    EK+  EM    I+    TY+++I+G+    + +E +  F
Sbjct: 327 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 386

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ S  C P++ T +++I  +  +  +E+  + + E +  G+  +  T   L   + +
Sbjct: 387 ELMI-SKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 445

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           A   D  + V   M      P ++TYNI+++   K G + K    F+ ++   M+P+  T
Sbjct: 446 ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYT 505

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  ++    KAG +     +   +    V  +   +N +IS + + G  E+   L   MK
Sbjct: 506 YNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMK 565

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           E   +P++ T+ T+I+A    G  EA+  L  +M
Sbjct: 566 EDGPLPNSGTYNTLIRARLRDGDREASAELIKEM 599



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 149/329 (45%), Gaps = 2/329 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF  M+     PS+  +  L+SA  +    +   S    M+++     D+YTYSI
Sbjct: 65  DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLG-ISHDLYTYSI 123

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            I    +  +  L   +LA+M  LG E   VT +++++GY  +K+  +  +    MVE  
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM- 182

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD FT  ++I          +     ++    G + D+ T   +     + G  D  
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            S++  M+K      VV YN +I+   K  H++     F +M ++G++P+  TY SL+S 
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G       +L  +    +  +   F+ +I A+ + G + +  +L+  M +R   PD
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
             T++++I  +      + A+++   MI+
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMIS 391



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 115/267 (43%), Gaps = 37/267 (13%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ M+   + P +  Y++L++ +     LDEA      M S  DC P+V TYS L
Sbjct: 346 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS-KDCFPNVVTYSTL 404

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           IK   K  R +   ++  EMS  G+  + VTY T+I G+ +A+  +  +  F  MV S G
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV-SVG 463

Query: 132 CHP-----------------------------------DIFTLNSMISAYGNSGNIEKME 156
            HP                                   DI+T N MI     +G +E   
Sbjct: 464 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGW 523

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           + +   +L GV  ++   N +   + R G  ++  S++  M++    P   TYN +I   
Sbjct: 524 ELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRAR 583

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            + G  E   E  K+M+  G   ++ T
Sbjct: 584 LRDGDREASAELIKEMRSCGFAGDAST 610



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 1/245 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S V +N ++    K  KFE +  S    +++ G   D++T +  I+ +     +      
Sbjct: 82  SIVEFNKLLSAVAKMNKFE-LVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             +   +G + DI TL+ L   Y  +       +++D M +  + P   T+  +I     
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
                +      +M  RG +P+ +TY ++V+   K G I    S+L+++E   +  D   
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +N II    +   ++    LF  M  +   PD  T++++I      G    A  L + MI
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320

Query: 339 AMKEN 343
             K N
Sbjct: 321 ERKIN 325


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 163/355 (45%), Gaps = 42/355 (11%)

Query: 4   LGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 61
           LG  ++  +A  LF E  L+  +KP    Y AL+  Y + G L  A   +++M   S C 
Sbjct: 266 LGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEM---SQCG 322

Query: 62  -KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT------------------ 102
             PD  TYS+L+ + T+  R++    +L EM   G++ S+                    
Sbjct: 323 VAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAF 382

Query: 103 -----------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
                            YN +ID +GK         +F  M E G   PD+ T N++I A
Sbjct: 383 AVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEG-IEPDVVTWNTLIDA 441

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           +   G  ++  + ++E           T NI+    G    ++ + +++  M+++   P 
Sbjct: 442 HCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPN 501

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           ++TY  +++ +G++G  ++  +  + MK  G+KP+   Y +LV+AY++ GL     ++++
Sbjct: 502 IITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVK 561

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            +    +   T   N +I+A+G+   + +   +   MKE    PD IT+ T+++A
Sbjct: 562 AMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKA 616



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 149/335 (44%), Gaps = 1/335 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            + + P+ A  L     + GL P  +  TAL+S+ G +  + EA +   +     + KP 
Sbjct: 232 ARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPR 291

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+ L+K   K       E++L EMS  G+     TY+ ++D Y +A ++E       
Sbjct: 292 TRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLK 351

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+ G  P  +  + +++ + + G  +K      E +  GV+ D    N++  ++G+ 
Sbjct: 352 EM-EADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKY 410

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
                     D M++    P VVT+N +I+   K G  ++  E F +M+       + TY
Sbjct: 411 NCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTY 470

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +++   +      V+++L +++   ++ +   +  ++  YG++G  ++  +    MK 
Sbjct: 471 NIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKA 530

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
               P    +  ++ AY   G+ + A N+   M A
Sbjct: 531 DGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRA 565



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 149/314 (47%), Gaps = 10/314 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M + S  +PD + Y++
Sbjct: 344 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHA-SGVRPDRHFYNV 402

Query: 71  LIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +I +  K+    H  D  +++  E    GIE   VT+NT+ID + K  + +     F  M
Sbjct: 403 MIDTFGKYNCLGHAMDAFDRMREE----GIEPDVVTWNTLIDAHCKGGRHDRAIELFDEM 458

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            ES  C     T N MI+  G     E +E    E    G+  +I T   L   YGR+G 
Sbjct: 459 RESN-CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGR 517

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           + +    ++ M+     P+   Y+ ++  + + G  +      K M+  G++ +++   S
Sbjct: 518 FKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNS 577

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++A+ +   I +  S+L+ ++ + +  D   +  ++ A  +    EK+  ++  M    
Sbjct: 578 LINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSG 637

Query: 307 CVPDNITFATMIQA 320
           C PD    A +  A
Sbjct: 638 CAPDRKARAMLRSA 651



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 126/285 (44%), Gaps = 3/285 (1%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S  +PD   +S LI +  +    D   ++LA    +G+   +     +I   G A++  E
Sbjct: 215 SRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAE 274

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E+ F     +G   P     N+++  Y   G+++  E+  +E +  GV  D  T ++L 
Sbjct: 275 AEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 334

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y RAG ++  R ++  M+     P+   ++ ++  F   G  +K     ++M   G++
Sbjct: 335 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 394

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+   Y  ++  + K   +        ++    +  D   +N +I A+ + G  ++  EL
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 454

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           F  M+E +C     T+  MI   N LG  +  + +E  +  MKE 
Sbjct: 455 FDEMRESNCPLGTTTYNIMI---NLLGEEQRWEGVEAMLAEMKEQ 496


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 163/355 (45%), Gaps = 42/355 (11%)

Query: 4   LGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 61
           LG  ++  +A  LF E  L+  +KP    Y AL+  Y + G L  A   +++M   S C 
Sbjct: 266 LGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEM---SQCG 322

Query: 62  -KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT------------------ 102
             PD  TYS+L+ + T+  R++    +L EM   G++ S+                    
Sbjct: 323 VAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAF 382

Query: 103 -----------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
                            YN +ID +GK         +F  M E G   PD+ T N++I A
Sbjct: 383 AVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEG-IEPDVVTWNTLIDA 441

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           +   G  ++  + ++E           T NI+    G    ++ + +++  M+++   P 
Sbjct: 442 HCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPN 501

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           ++TY  +++ +G++G  ++  +  + MK  G+KP+   Y +LV+AY++ GL     ++++
Sbjct: 502 IITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVK 561

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            +    +   T   N +I+A+G+   + +   +   MKE    PD IT+ T+++A
Sbjct: 562 AMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKA 616



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 149/335 (44%), Gaps = 1/335 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            + + P+ A  L     + GL P  +  TAL+S+ G +  + EA +   +     + KP 
Sbjct: 232 ARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPR 291

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+ L+K   K       E++L EMS  G+     TY+ ++D Y +A ++E       
Sbjct: 292 TRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLK 351

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+ G  P  +  + +++ + + G  +K      E +  GV+ D    N++  ++G+ 
Sbjct: 352 EM-EADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKY 410

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
                     D M++    P VVT+N +I+   K G  ++  E F +M+       + TY
Sbjct: 411 NCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTY 470

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +++   +      V+++L +++   ++ +   +  ++  YG++G  ++  +    MK 
Sbjct: 471 NIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKA 530

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
               P    +  ++ AY   G+ + A N+   M A
Sbjct: 531 DGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRA 565



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 149/314 (47%), Gaps = 10/314 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M + S  +PD + Y++
Sbjct: 344 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHA-SGVRPDRHFYNV 402

Query: 71  LIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +I +  K+    H  D  +++  E    GIE   VT+NT+ID + K  + +     F  M
Sbjct: 403 MIDTFGKYNCLGHAMDAFDRMREE----GIEPDVVTWNTLIDAHCKGGRHDRAIELFDEM 458

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            ES  C     T N MI+  G     E +E    E    G+  +I T   L   YGR+G 
Sbjct: 459 RESN-CPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGR 517

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           + +    ++ M+     P+   Y+ ++  + + G  +      K M+  G++ +++   S
Sbjct: 518 FKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNS 577

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++A+ +   I +  S+L+ ++ + +  D   +  ++ A  +    EK+  ++  M    
Sbjct: 578 LINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSG 637

Query: 307 CVPDNITFATMIQA 320
           C PD    A +  A
Sbjct: 638 CAPDRKARAMLRSA 651



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 134/302 (44%), Gaps = 3/302 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           L+P   +++ L+SA+ ++ L D A   +   +++    P     + LI S     R    
Sbjct: 217 LEPDAPLFSDLISAFARARLPDAALELLASAQAIG-LTPRSNAVTALISSLGSARRVAEA 275

Query: 85  EKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           E +  E    G I+     YN ++ GY K    +  E     M +  G  PD  T + ++
Sbjct: 276 EALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQC-GVAPDEATYSLLV 334

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AY  +G  E       E    GVK      + +   +   G + K  +V+  M      
Sbjct: 335 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 394

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P    YN++I+TFGK   +    + F +M+  G++P+ +T+ +L+ A+ K G   +   +
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 454

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             ++  S+  L T  +N +I+  G+    E +  +   MKE+  VP+ IT+ T++  Y  
Sbjct: 455 FDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGR 514

Query: 324 LG 325
            G
Sbjct: 515 SG 516



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 126/285 (44%), Gaps = 3/285 (1%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S  +PD   +S LI +  +    D   ++LA    +G+   +     +I   G A++  E
Sbjct: 215 SRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAE 274

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E+ F     +G   P     N+++  Y   G+++  E+  +E +  GV  D  T ++L 
Sbjct: 275 AEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 334

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +Y RAG ++  R ++  M+     P+   ++ ++  F   G  +K     ++M   G++
Sbjct: 335 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVR 394

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+   Y  ++  + K   +        ++    +  D   +N +I A+ + G  ++  EL
Sbjct: 395 PDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIEL 454

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           F  M+E +C     T+  MI   N LG  +  + +E  +  MKE 
Sbjct: 455 FDEMRESNCPLGTTTYNIMI---NLLGEEQRWEGVEAMLAEMKEQ 496


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 157/336 (46%), Gaps = 4/336 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  LF  M+  GL P V  Y +L+    ++  +D+A + +  M       PD  TY+I
Sbjct: 217 DKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFD-KGVMPDTRTYNI 275

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I+      + +   ++L +MS  G++   VTY+ +I  Y K  +  E  S F +MV  G
Sbjct: 276 MIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKG 335

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P+    + ++  Y   G +  +    +     G+  + +  NIL  +Y + G  DK 
Sbjct: 336 Q-KPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKA 394

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +    M++    P VV+Y+ VI    K G +E    +F +M   G+ PN I++ SL+  
Sbjct: 395 MTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHG 454

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G   KV+ +  ++ N  +  D  F N I+    + G V +  + F  +      PD
Sbjct: 455 LCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPD 514

Query: 311 NITFATMIQAYNALG-MTEAAQNLENKM-IAMKENS 344
            +++ T+I  Y  +G M E+ + L+  + I ++ +S
Sbjct: 515 VVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDS 550



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 135/280 (48%), Gaps = 4/280 (1%)

Query: 63  PDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEM 119
           PDV++Y+ LIK  C +    + +E ++   +  G  CS   V+YNT+IDG+ K  + ++ 
Sbjct: 160 PDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKA 219

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M+   G  PD+ T NS+I     +  ++K           GV  D +T NI+ +
Sbjct: 220 YFLFHEMM-GQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIR 278

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y   G  ++   ++  M      P VVTY+++I+ + K G   +    F  M  +G KP
Sbjct: 279 GYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKP 338

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           NS  Y  L+  Y+  G ++ V  +L  +    +  +   FN +I AY + G V+K    F
Sbjct: 339 NSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAF 398

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             M++    PD ++++T+I      G  E A    N+M++
Sbjct: 399 TEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVS 438



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 159/333 (47%), Gaps = 5/333 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A   F  M  +GL+P V  Y+ ++    ++G +++A    N M S     P++ +++ 
Sbjct: 392 DKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVS-EGLSPNIISFTS 450

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI        +  +E++  EM   GI   A+  NTI+D   K  +  E +  F  MV   
Sbjct: 451 LIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFD-MVIHI 509

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD+ + N++I  Y   G +++  K  +    +G++ D  T N L   Y + G  +  
Sbjct: 510 GVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDA 569

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            ++   M ++      +T NI++    +AG I    E + KM  RG +    TY +++  
Sbjct: 570 LALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGG 629

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +   + +   +   + + +  LD   F+ +I+A  + G +++   LF  M  R  VPD
Sbjct: 630 LCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPD 689

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
            IT++ MI+++   G+ E + NL    ++M++N
Sbjct: 690 VITYSLMIKSHIEEGLLEESDNL---FLSMEKN 719



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 153/356 (42%), Gaps = 47/356 (13%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVS---AYGQSGLLDE-AFSTINDMKSV 58
           +L K  + E A   F  M+S+GL P++  +T+L+    + G+   ++E AF  IN     
Sbjct: 419 ILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMIN----- 473

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PD    + ++ +  K  R    +     + ++G++   V+YNT+IDGY    K +E
Sbjct: 474 RGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDE 533

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  MV S G  PD +T NS+++ Y  +G +E     Y E     VK    T NI+ 
Sbjct: 534 SIKQLDRMV-SIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIML 592

Query: 179 KSYGRAG-----------MYDK-------------------------MRSVMDFMQKRFF 202
               +AG           M D+                         +R   D   K F 
Sbjct: 593 HGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFE 652

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
              V T++IVI    K G I++ +  F  M  RG  P+ ITY  ++ ++ + GL+ + D+
Sbjct: 653 L-DVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDN 711

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +   +E +    D+   N I+    + GDV + G     + E++   +  T A +I
Sbjct: 712 LFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALLI 767



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 150/334 (44%), Gaps = 10/334 (2%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E+A  L + M   GL+P V  Y+ L+  Y + G   EA S  + M      KP+   Y
Sbjct: 285 QLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQ-KPNSTIY 343

Query: 69  SILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
            IL+    TK    D +  +L  M   GI      +N +I  Y K    ++  ++F+ M 
Sbjct: 344 HILLHGYATKGALID-VRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMR 402

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           ++ G  PD+ + +++I     +G +E     +N+    G+  +I +   L       G +
Sbjct: 403 QN-GLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEW 461

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            K+  +   M  R   P  +  N +++   K G + + +++F  + H G+KP+ ++Y +L
Sbjct: 462 KKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTL 521

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVI---LDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           +  Y   G   K+D  ++Q++    I    D+  +N +++ Y + G VE    L+  M  
Sbjct: 522 IDGYCFVG---KMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFR 578

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +      IT   M+      G   AA+ L  KM+
Sbjct: 579 KDVKFCAITSNIMLHGLFQAGRIVAARELYMKMV 612



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 122/278 (43%), Gaps = 36/278 (12%)

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAMVE 128
           ILI+      R DL     A     G     VT N +I G     + ++ M+  F  M E
Sbjct: 96  ILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPE 155

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G   PD+F+ N++I        +EK  +   E  L+ + AD              G Y+
Sbjct: 156 LGYT-PDVFSYNALIKGLC----VEKKSQEALEL-LIHMTAD--------------GGYN 195

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
                          P VV+YN VI+ F K G ++K    F +M  +G+ P+ +TY SL+
Sbjct: 196 -------------CSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLI 242

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               KA  + K  +IL+ + +  V+ DT  +N +I  Y   G +E+   L   M      
Sbjct: 243 DGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQ 302

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMI--AMKENS 344
           PD +T++ +IQ Y  +G    A+++ + M+    K NS
Sbjct: 303 PDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNS 340


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 163/381 (42%), Gaps = 59/381 (15%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +   M+S G  P    Y+ ++     +  +D AF    +MKS +   PDV+TY+I
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS-NHVVPDVFTYTI 520

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S  K        K   EM   G   + VTY  +I  Y KA+K       F  M+ S 
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMML-SE 579

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK----------- 179
           GC P++ T  ++I  +  SG IEK  + Y     M   ADI  +++  K           
Sbjct: 580 GCIPNVVTYTALIDGHCKSGQIEKACQIYAR---MRGNADIPDVDMYFKIDDGNIRDPNI 636

Query: 180 -SYG-------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
            +YG       +A    + R ++D M      P  + Y+ +I+ F K G +++ +  F K
Sbjct: 637 FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696

Query: 232 MKHRGMKPNSITYCSLVSA-YSKAGLIMKVDSILRQVENS---DVILDTPF--------- 278
           M  RG  PN  TY SL+   +    L + +  + R +ENS   +VI+ T           
Sbjct: 697 MSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756

Query: 279 ----------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                                 +  +I  +G+AG V+K  EL   M  + C P+ +T+  
Sbjct: 757 TDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816

Query: 317 MIQAYNALGMTEAAQNLENKM 337
           +I    A G+ + A  L ++M
Sbjct: 817 LINHCCAAGLLDDAHQLLDEM 837



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 157/344 (45%), Gaps = 16/344 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + ++A  L +VM  +G +P+  VY AL+  + + G LDEA      M S     P
Sbjct: 646 LCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM-SERGYGP 704

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +VYTYS LI    K  R DL  K+L+ M       + + Y  +IDG  K  K +E     
Sbjct: 705 NVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLM 764

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M+E  GCHP++ T  +MI  +G +G ++K  +   +    G   +  T  +L      
Sbjct: 765 S-MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFKKMKHRGMK 238
           AG+ D    ++D M++ ++   +  Y  VIE F +      G ++++ E           
Sbjct: 824 AGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAV------- 876

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVEN--SDVILDTPFFNCIISAYGQAGDVEKMG 296
           P    Y  L+ ++ KAG +     + +++ +  S    D   ++ +I +   A  V+K  
Sbjct: 877 PIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAF 936

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           EL+  M +R  +P+   F  +++    +   E A  L + +  M
Sbjct: 937 ELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQM 980



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 153/356 (42%), Gaps = 30/356 (8%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+CK+      +  +M+++G  PS  ++ +L+ AY +SG    A+  +  M     C+P
Sbjct: 350 LGRCKR------ILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG-CQP 402

Query: 64  DVYTYSILI------KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
               Y+ILI      +        +L EK   EM    +  + V  + +      A KFE
Sbjct: 403 GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFE 462

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +  S    M+ S G  PD  T + +I    N+  ++     + E     V  D+ T  IL
Sbjct: 463 KAYSIIREMM-SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             S+ + G+  + R   D M +    P VVTY  +I  + KA  +    E F+ M   G 
Sbjct: 522 IDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC 581

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSIL-RQVENSDV-------------ILDTPFFN--C 281
            PN +TY +L+  + K+G I K   I  R   N+D+             I D   F    
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++    +A  V++  +L   M    C P++I +  +I  +  +G  + AQ +  KM
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 140/315 (44%), Gaps = 12/315 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +YT ++S   ++ L +EA   ++ M+S S C P+V TY IL+  C +  +    ++IL+ 
Sbjct: 301 IYTQMISGLCEASLFEEAMDFLSRMRS-SSCIPNVVTYRILLCGCLRKRQLGRCKRILSM 359

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M   G   S   +N++I  Y ++  +         M + G C P     N +I   G  G
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG-CQPGYVVYNILIG--GICG 416

Query: 151 N--------IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           N        +E  EK Y E     V  +   ++ L +    AG ++K  S++  M  + F
Sbjct: 417 NEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGF 476

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P   TY+ VI     A  ++     F++MK   + P+  TY  L+ ++ K GL+ +   
Sbjct: 477 IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARK 536

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
              ++       +   +  +I AY +A  +    ELF  M    C+P+ +T+  +I  + 
Sbjct: 537 WFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHC 596

Query: 323 ALGMTEAAQNLENKM 337
             G  E A  +  +M
Sbjct: 597 KSGQIEKACQIYARM 611



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 155/354 (43%), Gaps = 57/354 (16%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK--- 62
           K ++   A+ LFE+MLS+G  P+V  YTAL+  + +SG +++A      M+  +D     
Sbjct: 562 KARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVD 621

Query: 63  ------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
                       P+++TY  L+    K H+      +L  MS  G E + + Y+ +IDG+
Sbjct: 622 MYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681

Query: 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
            K  K +E +  F+ M E G   P+++T +S+I            ++ + +  L      
Sbjct: 682 CKVGKLDEAQMVFTKMSERGY-GPNVYTYSSLI------------DRLFKDKRL------ 722

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
                            D    V+  M +    P V+ Y  +I+   K G  ++      
Sbjct: 723 -----------------DLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMS 765

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            M+ +G  PN +TY +++  + KAG + K   ++RQ+       +   +  +I+    AG
Sbjct: 766 MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAG 825

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYN-----ALG-MTEAAQNLENKMI 338
            ++   +L   MK+ +       +  +I+ +N     +LG + E A+N+   +I
Sbjct: 826 LLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPII 879



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 145/346 (41%), Gaps = 14/346 (4%)

Query: 2   VMLGKCKQPEQASLLFEVM--LSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V++ KC +    ++  E +  L D G KPS   Y ALV  + ++  LD A+    +M S 
Sbjct: 202 VLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREM-SD 260

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S    D YT    +    K  R+    + LA +     +   V Y  +I G  +A  FEE
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRW---REALALIEKEEFKLDTVIYTQMISGLCEASLFEE 317

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                S M  S  C P++ T   ++        + + ++  +     G     +  N L 
Sbjct: 318 AMDFLSRM-RSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLI 376

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI------ETFGKAGHIEKMEEYFKKM 232
            +Y R+G Y     ++  M      P  V YNI+I      E       +E  E+ + +M
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEM 436

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
               +  N +   +L      AG   K  SI+R++ +   I DT  ++ +I     A  V
Sbjct: 437 LDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKV 496

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +    LF  MK  H VPD  T+  +I ++  +G+ + A+   ++M+
Sbjct: 497 DNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMV 542



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 78/179 (43%), Gaps = 3/179 (1%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           ++++   G  GN    E++  E      +   + LN+L +   R G+++     +  ++ 
Sbjct: 166 HALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKD 225

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
             + P+ +TYN ++  F +A  ++      ++M   G   +  T    V    KAG   +
Sbjct: 226 LGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG---R 282

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
               L  +E  +  LDT  +  +IS   +A   E+  +    M+   C+P+ +T+  ++
Sbjct: 283 WREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 110/292 (37%), Gaps = 48/292 (16%)

Query: 31  VYTALVSAYGQSG--LLDEAFSTINDMKSVSDCKPDVY--TYSILIKSCTKFHRFDLIEK 86
           VY AL+   G  G   + E F     ++ + D   ++     ++LI+ C +   +++  +
Sbjct: 164 VYHALLEVLGCGGNDRVPEQF-----LREIRDEDKEILGKLLNVLIRKCCRNGLWNVALE 218

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
            L  +  LG + S +TYN ++  + +A + +        M +SG                
Sbjct: 219 ELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSG---------------- 262

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
                          FN+ G      TL        +AG +   R  +  ++K  F    
Sbjct: 263 ---------------FNMDGY-----TLGCFVHLLCKAGRW---REALALIEKEEFKLDT 299

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V Y  +I    +A   E+  ++  +M+     PN +TY  L+    +   + +   IL  
Sbjct: 300 VIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSM 359

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +           FN +I AY ++GD     +L   M +  C P  + +  +I
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILI 411


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 149/307 (48%), Gaps = 2/307 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y AL+       L+D A    ++MK +  C PD +TY +++ +  K  R + + KI  EM
Sbjct: 72  YNALICGLVDEDLIDIAEELFSEMKRLG-CDPDEFTYHLILDAMGKSMRIEDMLKIQEEM 130

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
              G + + VTYNTII G  K+K  +E  + +  ++ S G  P   T   ++      GN
Sbjct: 131 HNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLM-SEGFSPTPCTYGPLLDGLLKDGN 189

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           IE  E  ++E    G + +    NIL   Y  AG  +K+  + + M ++   P + +Y +
Sbjct: 190 IEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 249

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           VI+T    G +     YFK++   G++P+ ITY  L+    K+G + +  S+   +E   
Sbjct: 250 VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKG 309

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           +  +   +N +I   G+AG   + G+++  +  +   P+  T+  +I+ Y+  G  E A 
Sbjct: 310 IAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAF 369

Query: 332 NLENKMI 338
               +MI
Sbjct: 370 AAYGRMI 376



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 113/278 (40%), Gaps = 35/278 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           +GK  + E    + E M + G K +   Y  ++S   +S +LDEA +    + S     P
Sbjct: 114 MGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMS-EGFSP 172

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
              TY  L+    K    +  E +  EM   G E +   YN +++GY  A   E++   F
Sbjct: 173 TPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELF 232

Query: 124 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
            +MVE G                                  G  PD+ T N +I   G S
Sbjct: 233 ESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKS 292

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G +E+    YN+    G+  ++ T N L    G+AG   +   + + +  + + P V TY
Sbjct: 293 GRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTY 352

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           N +I  +  +G  E     + +M   G +PNS TY  L
Sbjct: 353 NALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 390



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 112/269 (41%), Gaps = 1/269 (0%)

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S +I+   K        +++ +   LG+     +YN +I G       +  E  FS M +
Sbjct: 38  SPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEM-K 96

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             GC PD FT + ++ A G S  IE M K   E +  G K+   T N +     ++ M D
Sbjct: 97  RLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLD 156

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +  ++   +    F PT  TY  +++   K G+IE  E  F +M   G +PN   Y  L+
Sbjct: 157 EAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILL 216

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           + Y  AG   KV  +   +    +  D   +  +I      G +      F  + +    
Sbjct: 217 NGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLE 276

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKM 337
           PD IT+  +I      G  E A +L N M
Sbjct: 277 PDLITYNLLIHGLGKSGRLEEALSLYNDM 305



 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ LGK  +  +A  ++E +L+ G KP+V  Y AL+  Y  SG  + AF+    M  V  
Sbjct: 321 ILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRM-IVGG 379

Query: 61  CKPDVYTY 68
           C+P+  TY
Sbjct: 380 CRPNSSTY 387


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 152/329 (46%), Gaps = 10/329 (3%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA----FSTINDMKSVSDCKPDVYTYSIL 71
           L   ML+  LKP+  + TA +    +SG  +EA    F  +     V     +V T + L
Sbjct: 409 LIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGV-----NVATSNAL 463

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    + +      K+L  M   G+E   +TYN +I G  KA K +E       M++ G 
Sbjct: 464 IHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRG- 522

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+FT N  +  Y N G +E++    ++    G+K DI T   +   Y +A    K  
Sbjct: 523 FKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKAN 582

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
             +  + K    P  V YN +I  +G+ G+I         MK+ G++P  +TY SL+   
Sbjct: 583 EYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWM 642

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
             AGL+ +V ++  Q    D+ L    +  II  + + G +++    F  M  R   P+ 
Sbjct: 643 CHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNK 702

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAM 340
           +T+ T++ AY+  G  E A  L ++M+++
Sbjct: 703 MTYTTLMFAYSKSGNKEEASKLFDEMVSL 731



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 149/287 (51%), Gaps = 2/287 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ + + M++ G++     Y  ++    ++  +DEA    +DM      KPD++T++I
Sbjct: 474 KEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIK-RGFKPDLFTFNI 532

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            + +     + + I  +L +M   G++   VTY TIIDGY KAK   +     + ++++G
Sbjct: 533 FLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNG 592

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P+    N++I  YG +GNI       +     G++    T N L      AG+ +++
Sbjct: 593 -LRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEV 651

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           ++V      +     V+ Y I+I+ F K G I++   YFK+M  RG+ PN +TY +L+ A
Sbjct: 652 KAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFA 711

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           YSK+G   +   +  ++ +  ++ D+  +N +IS + +   ++KM E
Sbjct: 712 YSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMVE 758



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 138/315 (43%), Gaps = 3/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G++P+V  Y  L+ A  +SG ++EAF     M      +P + T+ ILI    +  +F  
Sbjct: 241 GIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVE-GRVRPSIVTFGILISGLARGQQFGE 299

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           +  +L EM   GI  + V YN +I  + +     E    F  MV S G    + T N + 
Sbjct: 300 VGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMV-SKGIKQTVVTYNLIA 358

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-GMYDKMRSVMDFMQKRFF 202
            A    G +E  EK  +E  L G+       N +   + R  G  D +  ++  M  RF 
Sbjct: 359 KALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFL 418

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P        I+   K+G  E+  E + ++  +G+  N  T  +L+    +   + +   
Sbjct: 419 KPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATK 478

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           +L+ + NS V LD   +N +I    +A  +++  +L   M +R   PD  TF   +  Y 
Sbjct: 479 VLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYC 538

Query: 323 ALGMTEAAQNLENKM 337
            LG  E   +L ++M
Sbjct: 539 NLGKVEEILHLLDQM 553



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 117/260 (45%), Gaps = 9/260 (3%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+  F  + + G  PS+   + LV A G  G LD A     +M+      PDV+TY+ +
Sbjct: 158 RAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAM 217

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           IK+  +    D    +LAE+   GI+ + VTYN ++D   K+ + EE       MVE G 
Sbjct: 218 IKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVE-GR 276

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P I T   +IS         ++     E    G+  +    N +   + R G   +  
Sbjct: 277 VRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEAL 336

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL---V 248
            + D M  +    TVVTYN++ +   K G +E  E+   +M   GM    + +CSL   V
Sbjct: 337 KLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGM----MVHCSLFNSV 392

Query: 249 SAYSKAGLIMKVDSILRQVE 268
            A+   G   ++D +LR + 
Sbjct: 393 VAWHLRG-TGRLDLVLRLIR 411



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 2/209 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K   +A+     ++ +GL+P+  +Y AL+  YG++G + +A   ++ MK  +  +P  
Sbjct: 574 KAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMK-YNGIQPTP 632

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ L+         + ++ + A+     IE   + Y  II G+ K  K +E    F  
Sbjct: 633 VTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKE 692

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M  S G  P+  T  +++ AY  SGN E+  K ++E   +G+  D  + N L   +    
Sbjct: 693 M-HSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVD 751

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             DKM      M  +       +YN  ++
Sbjct: 752 SLDKMVESPAEMSSQVLKQDGCSYNAFVD 780



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTKSYGRAGMYDK 189
           G  P I T + ++ A G  G ++   K + E  +   V  D+ T   + K+  RAG  D 
Sbjct: 170 GASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDA 229

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             +++  +++    PTVVTYN++++   K+G +E+      +M    ++P+ +T+  L+S
Sbjct: 230 AFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILIS 289

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
             ++     +V ++L++++   +  +   +N +I  + + G   +  +LF  M  +    
Sbjct: 290 GLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQ 349

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMI 338
             +T+  + +A    G  E A+ + ++M+
Sbjct: 350 TVVTYNLIAKALCKEGEMEHAEKILDEML 378



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/305 (19%), Positives = 127/305 (41%), Gaps = 16/305 (5%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           P  ++LL + +++D  + S+     LVS   +   L  A + I D    S C     T  
Sbjct: 91  PRVSTLLLQSLVAD--RASLPSARRLVSRLLRFNPLSVAAAAIAD----SHC---TATAD 141

Query: 70  ILIKSCTKFHRFDLIEKI---LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +L+++C        + +      E+S  G   S  T + +++  G   + +     F  M
Sbjct: 142 LLVRACLNSPAPGSLSRAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEM 201

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            +     PD+ T  +MI A   +G I+       E    G++  + T N+L  +  ++G 
Sbjct: 202 RDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGR 261

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            ++   +   M +    P++VT+ I+I    +     ++    ++M+  G+ PN + Y  
Sbjct: 262 VEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNE 321

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK----MGELFLTM 302
           ++  + + G   +   +  ++ +  +      +N I  A  + G++E     + E+ L  
Sbjct: 322 MIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAG 381

Query: 303 KERHC 307
              HC
Sbjct: 382 MMVHC 386



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  + ++A + F+ M S G+ P+   YT L+ AY +SG  +EA    ++M S+
Sbjct: 672 IIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSL 731

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
               PD  +Y+ LI    +    D + +  AEMS   ++    +YN  +DG
Sbjct: 732 G-IVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDG 781


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 157/331 (47%), Gaps = 4/331 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-S 69
           ++A   +  ML  G+ P V  Y ++++A  ++  +D+A   +N M   +   PD  TY S
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK-NGVMPDCMTYNS 271

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           IL   C+     + I   L +M   G+E   VTY+ ++D   K  +  E    F +M + 
Sbjct: 272 ILHGYCSSGQPKEAI-GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G   P+I T  +++  Y   G + +M    +     G+  D    +IL  +Y + G  D+
Sbjct: 331 G-LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQ 389

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              V   M+++   P  VTY  VI    K+G +E    YF++M   G+ P +I Y SL+ 
Sbjct: 390 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 449

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
                    + + ++ ++ +  + L+T FFN II ++ + G V +  +LF  M      P
Sbjct: 450 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           + IT+ T+I  Y   G  + A  L + M+++
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 5/300 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C +  +   +F+ M   GLKP +  Y  L+  Y   G L E    + D+   +   PD
Sbjct: 315 GRCMEARK---IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPD 370

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            Y +SILI +  K  + D    + ++M   G+  +AVTY  +I    K+ + E+    F 
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M++ G   P     NS+I         E+ E+   E    G+  +    N +  S+ + 
Sbjct: 431 QMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 489

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +   + + M +    P V+TYN +I  +  AG +++  +    M   G+KPN++TY
Sbjct: 490 GRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L++ Y K   +     + +++E+S V  D   +N I+    Q        EL++ + E
Sbjct: 550 STLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITE 609



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 160/343 (46%), Gaps = 7/343 (2%)

Query: 2   VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 59  SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
             C P+V++Y+IL+K  C +    + +E   ++A+    G     V+Y T+I+G+ K   
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
            ++  S++  M++  G  PD+ T NS+I+A   +  ++K  +  N     GV  D  T N
Sbjct: 212 SDKAYSTYHEMLDR-GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +   Y  +G   +    +  M+     P VVTY+++++   K G   +  + F  M  R
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G+KP   TY +L+  Y+  G ++++  +L  +  + +  D   F+ +I AY + G V++ 
Sbjct: 331 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQA 390

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +F  M+++   P+ +T+  +I      G  E A     +MI
Sbjct: 391 MLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 158/366 (43%), Gaps = 39/366 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A  +   M+ +G+ P    Y +++  Y  SG   EA   +  M+S    +P
Sbjct: 241 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS-DGVEP 299

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TYS+L+    K  R     KI   M+  G++    TY T++ GY       EM    
Sbjct: 300 DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 359

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT----LNILTK 179
             MV +G  HPD +  + +I AY   G +++    +++    G+  +  T    + IL K
Sbjct: 360 DLMVRNG-IHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCK 418

Query: 180 SYGRA--------------------------------GMYDKMRSVMDFMQKRFFFPTVV 207
           S GR                                   +++   ++  M  R      +
Sbjct: 419 S-GRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 477

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            +N +I++  K G + + E+ F+ M   G+KPN ITY +L++ Y  AG + +   +L  +
Sbjct: 478 FFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGM 537

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
            +  +  +T  ++ +I+ Y +   +E    LF  M+     PD IT+  ++Q       T
Sbjct: 538 VSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRT 597

Query: 328 EAAQNL 333
            AA+ L
Sbjct: 598 AAAKEL 603



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 143/319 (44%), Gaps = 4/319 (1%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHR 80
           +D + P +  Y  L+    ++G LD  F+ + ++      + D   ++ L+K  C     
Sbjct: 80  ADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIK-KGFRVDAIAFTPLLKGLCADKRT 138

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFT 138
            D ++ +L  M+ LG   +  +YN ++ G     + +E       M +   GG  PD+ +
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
             ++I+ +   G+ +K    Y+E    G+  D+ T N +  +  +A   DK   V++ M 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           K    P  +TYN ++  +  +G  ++   + KKM+  G++P+ +TY  L+    K G  M
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +   I   +    +  +   +  ++  Y   G + +M  L   M      PD+  F+ +I
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378

Query: 319 QAYNALGMTEAAQNLENKM 337
            AY   G  + A  + +KM
Sbjct: 379 CAYAKQGKVDQAMLVFSKM 397



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 137/303 (45%), Gaps = 2/303 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L  C + E+A  L   ML  G+  +   + +++ ++ + G + E+      M  +   KP
Sbjct: 451 LCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG-VKP 509

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TY+ LI       + D   K+L+ M  +G++ + VTY+T+I+GY K  + E+    F
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ES G  PDI T N ++     +      ++ Y      G + ++ T NI+     +
Sbjct: 570 KEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK 628

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
             + D    +   +          T+NI+I+   K G  ++ ++ F      G+ PN  T
Sbjct: 629 NKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWT 688

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +       GL+ ++D +   +E++   +D+   N I+    Q G++ + G     + 
Sbjct: 689 YRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMID 748

Query: 304 ERH 306
           E+H
Sbjct: 749 EKH 751



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 152/336 (45%), Gaps = 11/336 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA L+F  M   GL P+   Y A++    +SG +++A      M       P    Y+ 
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGLSPGNIVYNS 446

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI      ++++  E+++ EM   GI  + + +N+IID + K  +  E E  F  MV  G
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T N++I+ Y  +G +++  K  +    +G+K +  T + L   Y +    +  
Sbjct: 507 -VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M+     P ++TYNI+++   +       +E + ++   G +    TY  ++  
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625

Query: 251 YSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
             K  L    D  L+  +N    D+ L+   FN +I A  + G  ++  +LF+       
Sbjct: 626 LCKNKL---TDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGL 682

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           VP+  T+  M +     G+ E    L+   ++M++N
Sbjct: 683 VPNYWTYRLMAENIIGQGLLE---ELDQLFLSMEDN 715



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 142/338 (42%), Gaps = 16/338 (4%)

Query: 11  EQASLLFEVMLSDGLKPSV-DVYTALVSAYGQSGLLDEAFSTINDMK--SVSDCKPDVYT 67
           E A  +F+ +L  G   S+  +  AL      S     A S  N M      +  PD+ T
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARDSPA--AAVSRYNRMARAGADEVTPDLCT 89

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAM 126
           Y ILI  C +  R DL    L  +   G    A+ +  ++ G    K+  + M+     M
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GVKADIQTLNILTKS 180
            E G C P++F+ N ++    +     + ++     ++M      G   D+ +   +   
Sbjct: 150 TELG-CIPNVFSYNILLKGLCDE---NRSQEALELLHMMADDRGGGSPPDVVSYTTVING 205

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + + G  DK  S    M  R   P VVTYN +I    KA  ++K  E    M   G+ P+
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 265

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY S++  Y  +G   +    L+++ +  V  D   ++ ++    + G   +  ++F 
Sbjct: 266 CMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFD 325

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +M +R   P+  T+ T++Q Y   G       L + M+
Sbjct: 326 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 163/381 (42%), Gaps = 59/381 (15%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +   M+S G  P    Y+ ++     +  +D AF    +MKS +   PDV+TY+I
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS-NHVVPDVFTYTI 520

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S  K        K   EM   G   + VTY  +I  Y KA+K       F  M+ S 
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMML-SE 579

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK----------- 179
           GC P++ T  ++I  +  SG IEK  + Y     M   ADI  +++  K           
Sbjct: 580 GCIPNVVTYTALIDGHCKSGQIEKACQIYAR---MRGNADIPDVDMYFKIDDGNIRDPNI 636

Query: 180 -SYG-------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
            +YG       +A    + R ++D M      P  + Y+ +I+ F K G +++ +  F K
Sbjct: 637 FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696

Query: 232 MKHRGMKPNSITYCSLVSA-YSKAGLIMKVDSILRQVENS---DVILDTPF--------- 278
           M  RG  PN  TY SL+   +    L + +  + R +ENS   +VI+ T           
Sbjct: 697 MSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756

Query: 279 ----------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                                 +  +I  +G+AG V+K  EL   M  + C P+ +T+  
Sbjct: 757 TDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816

Query: 317 MIQAYNALGMTEAAQNLENKM 337
           +I    A G+ + A  L ++M
Sbjct: 817 LINHCCAAGLLDDAHQLLDEM 837



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 157/344 (45%), Gaps = 16/344 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + ++A  L +VM  +G +P+  VY AL+  + + G LDEA      M S     P
Sbjct: 646 LCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM-SERGYGP 704

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +VYTYS LI    K  R DL  K+L+ M       + + Y  +IDG  K  K +E     
Sbjct: 705 NVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLM 764

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M+E  GCHP++ T  +MI  +G +G ++K  +   +    G   +  T  +L      
Sbjct: 765 S-MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFKKMKHRGMK 238
           AG+ D    ++D M++ ++   +  Y  VIE F +      G ++++ E           
Sbjct: 824 AGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAV------- 876

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVEN--SDVILDTPFFNCIISAYGQAGDVEKMG 296
           P    Y  L+ ++ KAG +     + +++ +  S    D   ++ +I +   A  V+K  
Sbjct: 877 PIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAF 936

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           EL+  M +R  +P+   F  +++    +   E A  L + +  M
Sbjct: 937 ELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQM 980



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 153/356 (42%), Gaps = 30/356 (8%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+CK+      +  +M+++G  PS  ++ +L+ AY +SG    A+  +  M     C+P
Sbjct: 350 LGRCKR------ILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG-CQP 402

Query: 64  DVYTYSILI------KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
               Y+ILI      +        +L EK   EM    +  + V  + +      A KFE
Sbjct: 403 GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFE 462

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +  S    M+ S G  PD  T + +I    N+  ++     + E     V  D+ T  IL
Sbjct: 463 KAYSIIREMM-SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             S+ + G+  + R   D M +    P VVTY  +I  + KA  +    E F+ M   G 
Sbjct: 522 IDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC 581

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSIL-RQVENSDV-------------ILDTPFFN--C 281
            PN +TY +L+  + K+G I K   I  R   N+D+             I D   F    
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++    +A  V++  +L   M    C P++I +  +I  +  +G  + AQ +  KM
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 140/315 (44%), Gaps = 12/315 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +YT ++S   ++ L +EA   ++ M+S S C P+V TY IL+  C +  +    ++IL+ 
Sbjct: 301 IYTQMISGLCEASLFEEAMDFLSRMRS-SSCIPNVVTYRILLCGCLRKRQLGRCKRILSM 359

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M   G   S   +N++I  Y ++  +         M + G C P     N +I   G  G
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG-CQPGYVVYNILIG--GICG 416

Query: 151 N--------IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           N        +E  EK Y E     V  +   ++ L +    AG ++K  S++  M  + F
Sbjct: 417 NEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGF 476

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P   TY+ VI     A  ++     F++MK   + P+  TY  L+ ++ K GL+ +   
Sbjct: 477 IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARK 536

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
              ++       +   +  +I AY +A  +    ELF  M    C+P+ +T+  +I  + 
Sbjct: 537 WFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHC 596

Query: 323 ALGMTEAAQNLENKM 337
             G  E A  +  +M
Sbjct: 597 KSGQIEKACQIYARM 611



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 155/354 (43%), Gaps = 57/354 (16%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK--- 62
           K ++   A+ LFE+MLS+G  P+V  YTAL+  + +SG +++A      M+  +D     
Sbjct: 562 KARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVD 621

Query: 63  ------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
                       P+++TY  L+    K H+      +L  MS  G E + + Y+ +IDG+
Sbjct: 622 MYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681

Query: 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
            K  K +E +  F+ M E G   P+++T +S+I            ++ + +  L      
Sbjct: 682 CKVGKLDEAQMVFTKMSERGY-GPNVYTYSSLI------------DRLFKDKRL------ 722

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
                            D    V+  M +    P V+ Y  +I+   K G  ++      
Sbjct: 723 -----------------DLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMS 765

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            M+ +G  PN +TY +++  + KAG + K   ++RQ+       +   +  +I+    AG
Sbjct: 766 MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAG 825

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYN-----ALG-MTEAAQNLENKMI 338
            ++   +L   MK+ +       +  +I+ +N     +LG + E A+N+   +I
Sbjct: 826 LLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPII 879



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 133/321 (41%), Gaps = 11/321 (3%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G KPS   Y ALV  + ++  LD A+    +M S S    D YT    +    K  R+  
Sbjct: 227 GYKPSRLTYNALVRVFLEADRLDTAYLVHREM-SDSGFNMDGYTLGCFVHLLCKAGRW-- 283

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             + LA +     +   V Y  +I G  +A  FEE     S M  S  C P++ T   ++
Sbjct: 284 -REALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRM-RSSSCIPNVVTYRILL 341

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                   + + ++  +     G     +  N L  +Y R+G Y     ++  M      
Sbjct: 342 CGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQ 401

Query: 204 PTVVTYNIVI------ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           P  V YNI+I      E       +E  E+ + +M    +  N +   +L      AG  
Sbjct: 402 PGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKF 461

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            K  SI+R++ +   I DT  ++ +I     A  V+    LF  MK  H VPD  T+  +
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521

Query: 318 IQAYNALGMTEAAQNLENKMI 338
           I ++  +G+ + A+   ++M+
Sbjct: 522 IDSFCKVGLLQQARKWFDEMV 542



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 78/179 (43%), Gaps = 3/179 (1%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           ++++   G  GN    E++  E      +   + LN+L +   R G+++     +  ++ 
Sbjct: 166 HALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKD 225

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
             + P+ +TYN ++  F +A  ++      ++M   G   +  T    V    KAG   +
Sbjct: 226 LGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG---R 282

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
               L  +E  +  LDT  +  +IS   +A   E+  +    M+   C+P+ +T+  ++
Sbjct: 283 WREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 110/292 (37%), Gaps = 48/292 (16%)

Query: 31  VYTALVSAYGQSG--LLDEAFSTINDMKSVSDCKPDVY--TYSILIKSCTKFHRFDLIEK 86
           VY AL+   G  G   + E F     ++ + D   ++     ++LI+ C +   +++  +
Sbjct: 164 VYHALLEVLGCGGNDRVPEQF-----LREIRDEDKEILGKLLNVLIRKCCRNGLWNVALE 218

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
            L  +  LG + S +TYN ++  + +A + +        M +SG                
Sbjct: 219 ELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSG---------------- 262

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
                          FN+ G      TL        +AG +   R  +  ++K  F    
Sbjct: 263 ---------------FNMDG-----YTLGCFVHLLCKAGRW---REALALIEKEEFKLDT 299

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V Y  +I    +A   E+  ++  +M+     PN +TY  L+    +   + +   IL  
Sbjct: 300 VIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSM 359

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +           FN +I AY ++GD     +L   M +  C P  + +  +I
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILI 411


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 163/381 (42%), Gaps = 59/381 (15%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +   M+S G  P    Y+ ++     +  +D AF    +MKS +   PDV+TY+I
Sbjct: 462 EKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKS-NHVVPDVFTYTI 520

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S  K        K   EM   G   + VTY  +I  Y KA+K       F  M+ S 
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMML-SE 579

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK----------- 179
           GC P++ T  ++I  +  SG IEK  + Y     M   ADI  +++  K           
Sbjct: 580 GCIPNVVTYTALIDGHCKSGQIEKACQIYAR---MRGNADIPDVDMYFKIDDGNIRDPNI 636

Query: 180 -SYG-------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
            +YG       +A    + R ++D M      P  + Y+ +I+ F K G +++ +  F K
Sbjct: 637 FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696

Query: 232 MKHRGMKPNSITYCSLVSA-YSKAGLIMKVDSILRQVENS---DVILDTPF--------- 278
           M  RG  PN  TY SL+   +    L + +  + R +ENS   +VI+ T           
Sbjct: 697 MSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGK 756

Query: 279 ----------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                                 +  +I  +G+AG V+K  EL   M  + C P+ +T+  
Sbjct: 757 TDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816

Query: 317 MIQAYNALGMTEAAQNLENKM 337
           +I    A G+ + A  L ++M
Sbjct: 817 LINHCCAAGLLDDAHQLLDEM 837



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 149/324 (45%), Gaps = 16/324 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + ++A  L +VM  +G +P+  VY AL+  + + G LDEA      M S     P
Sbjct: 646 LCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM-SERGYGP 704

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +VYTYS LI    K  R DL  K+L+ M       + + Y  +IDG  K  K +E     
Sbjct: 705 NVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLM 764

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M+E  GCHP++ T  +MI  +G +G ++K  +   +    G   +  T  +L      
Sbjct: 765 S-MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFKKMKHRGMK 238
           AG+ D    ++D M++ ++   +  Y  VIE F +      G ++++ E           
Sbjct: 824 AGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAV------- 876

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVEN--SDVILDTPFFNCIISAYGQAGDVEKMG 296
           P    Y  L+ ++ KAG +     + + + +  S    D   ++ +I +   A  V+K  
Sbjct: 877 PIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAF 936

Query: 297 ELFLTMKERHCVPDNITFATMIQA 320
           EL+  M +R  +P+   F  +++ 
Sbjct: 937 ELYADMIKRGGIPELSIFFYLVKG 960



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 153/356 (42%), Gaps = 30/356 (8%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+CK+      +  +M+++G  PS  ++ +L+ AY +SG    A+  +  M     C+P
Sbjct: 350 LGRCKR------ILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG-CQP 402

Query: 64  DVYTYSILI------KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
               Y+ILI      +        +L EK   EM    +  + V  + +      A KFE
Sbjct: 403 GYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFE 462

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +  S    M+ S G  PD  T + +I    N+  ++     + E     V  D+ T  IL
Sbjct: 463 KAYSIIREMM-SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             S+ + G+  + R   D M +    P VVTY  +I  + KA  +    E F+ M   G 
Sbjct: 522 IDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC 581

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSIL-RQVENSDV-------------ILDTPFFN--C 281
            PN +TY +L+  + K+G I K   I  R   N+D+             I D   F    
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++    +A  V++  +L   M    C P++I +  +I  +  +G  + AQ +  KM
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKM 697



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 140/315 (44%), Gaps = 12/315 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +YT ++S   ++ L +EA   ++ M+S S C P+V TY IL+  C +  +    ++IL+ 
Sbjct: 301 IYTQMISGLCEASLFEEAMDFLSRMRS-SSCIPNVVTYRILLCGCLRKRQLGRCKRILSM 359

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M   G   S   +N++I  Y ++  +         M + G C P     N +I   G  G
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG-CQPGYVVYNILIG--GICG 416

Query: 151 N--------IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           N        +E  EK Y E     V  +   ++ L +    AG ++K  S++  M  + F
Sbjct: 417 NEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGF 476

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P   TY+ VI     A  ++     F++MK   + P+  TY  L+ ++ K GL+ +   
Sbjct: 477 IPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARK 536

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
              ++       +   +  +I AY +A  +    ELF  M    C+P+ +T+  +I  + 
Sbjct: 537 WFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHC 596

Query: 323 ALGMTEAAQNLENKM 337
             G  E A  +  +M
Sbjct: 597 KSGQIEKACQIYARM 611



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 155/354 (43%), Gaps = 57/354 (16%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK--- 62
           K ++   A+ LFE+MLS+G  P+V  YTAL+  + +SG +++A      M+  +D     
Sbjct: 562 KARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVD 621

Query: 63  ------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
                       P+++TY  L+    K H+      +L  MS  G E + + Y+ +IDG+
Sbjct: 622 MYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGF 681

Query: 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
            K  K +E +  F+ M E G   P+++T +S+I            ++ + +  L      
Sbjct: 682 CKVGKLDEAQMVFTKMSERGY-GPNVYTYSSLI------------DRLFKDKRL------ 722

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
                            D    V+  M +    P V+ Y  +I+   K G  ++      
Sbjct: 723 -----------------DLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMS 765

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            M+ +G  PN +TY +++  + KAG + K   ++RQ+       +   +  +I+    AG
Sbjct: 766 MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAG 825

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYN-----ALG-MTEAAQNLENKMI 338
            ++   +L   MK+ +       +  +I+ +N     +LG + E A+N+   +I
Sbjct: 826 LLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPII 879



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 145/346 (41%), Gaps = 14/346 (4%)

Query: 2   VMLGKCKQPEQASLLFEVM--LSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V++ KC +    ++  E +  L D G KPS   Y ALV  + ++  LD A+    +M S 
Sbjct: 202 VLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREM-SD 260

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S    D YT    +    K  R+    + LA +     +   V Y  +I G  +A  FEE
Sbjct: 261 SGFNMDGYTLGCFVHLLCKAGRW---REALALIEKEEFKLDTVIYTQMISGLCEASLFEE 317

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                S M  S  C P++ T   ++        + + ++  +     G     +  N L 
Sbjct: 318 AMDFLSRM-RSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLI 376

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI------ETFGKAGHIEKMEEYFKKM 232
            +Y R+G Y     ++  M      P  V YNI+I      E       +E  E+ + +M
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEM 436

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
               +  N +   +L      AG   K  SI+R++ +   I DT  ++ +I     A  V
Sbjct: 437 LDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKV 496

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +    LF  MK  H VPD  T+  +I ++  +G+ + A+   ++M+
Sbjct: 497 DNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMV 542



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 78/179 (43%), Gaps = 3/179 (1%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           ++++   G  GN    E++  E      +   + LN+L +   R G+++     +  ++ 
Sbjct: 166 HALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVALEELGRLKD 225

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
             + P+ +TYN ++  F +A  ++      ++M   G   +  T    V    KAG   +
Sbjct: 226 LGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAG---R 282

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
               L  +E  +  LDT  +  +IS   +A   E+  +    M+   C+P+ +T+  ++
Sbjct: 283 WREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILL 341



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/292 (19%), Positives = 110/292 (37%), Gaps = 48/292 (16%)

Query: 31  VYTALVSAYGQSG--LLDEAFSTINDMKSVSDCKPDVY--TYSILIKSCTKFHRFDLIEK 86
           VY AL+   G  G   + E F     ++ + D   ++     ++LI+ C +   +++  +
Sbjct: 164 VYHALLEVLGCGGNDRVPEQF-----LREIRDEDKEILGKLLNVLIRKCCRNGLWNVALE 218

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
            L  +  LG + S +TYN ++  + +A + +        M +SG                
Sbjct: 219 ELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSG---------------- 262

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
                          FN+ G      TL        +AG +   R  +  ++K  F    
Sbjct: 263 ---------------FNMDGY-----TLGCFVHLLCKAGRW---REALALIEKEEFKLDT 299

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V Y  +I    +A   E+  ++  +M+     PN +TY  L+    +   + +   IL  
Sbjct: 300 VIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSM 359

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +           FN +I AY ++GD     +L   M +  C P  + +  +I
Sbjct: 360 MITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILI 411


>gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
 gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 711

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 135/287 (47%), Gaps = 2/287 (0%)

Query: 53  NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112
           N +KS S    +   Y++ +KS     +F LIE++  EM   G+E   +TY+TII    +
Sbjct: 174 NWVKSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKR 233

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
              + +    F  M ++G   PD  T ++++  Y  SG +E++   Y      G K D  
Sbjct: 234 CNLYNKAIEWFERMYKTG-LMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAI 292

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
             ++L K +G AG YD +R V+  M+     P VV YN ++E  G+AG        F +M
Sbjct: 293 AFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEM 352

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
              G+ PN  T  +LV  Y KA        +  +++     +D   +N +++     G  
Sbjct: 353 LEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLE 412

Query: 293 EKMGELFLTMKER-HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           E+   LF  MKE   C PDN ++  M+  Y + G  E A  L  +M+
Sbjct: 413 EEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEML 459



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 159/348 (45%), Gaps = 48/348 (13%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C    +A   FE M   GL P    Y+A++  Y +SG ++E  S + +    +  KPD 
Sbjct: 233 RCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLS-LYERAVATGWKPDA 291

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             +S+L K   +   +D I  +L EM  + ++ + V YNT+++  G+A K     S F+ 
Sbjct: 292 IAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNE 351

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+E+ G  P+  TL +++  YG +       +W         +  +Q             
Sbjct: 352 MLEA-GLTPNEKTLTALVKIYGKA-------RW--------ARDALQ------------- 382

Query: 186 MYDKMRS---VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNS 241
           ++++M++    MDF          + YN ++      G  E+ E  F  MK     +P++
Sbjct: 383 LWEEMKAKKWPMDF----------ILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDN 432

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            +Y ++++ Y   G   K   +  ++  + V ++     C++   G+A  ++ +  +F  
Sbjct: 433 FSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDL 492

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
             +R   PD+     ++   + + + E++++ E K++A  E + KKL+
Sbjct: 493 SIKRGVKPDDRLCGCLL---SVMALCESSEDAE-KVMACLERANKKLV 536



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 83/176 (47%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           GV+ D  T + +     R  +Y+K     + M K    P  VTY+ +++ + K+G +E++
Sbjct: 216 GVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEV 275

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
              +++    G KP++I +  L   + +AG    +  +L+++++ DV  +   +N ++ A
Sbjct: 276 LSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEA 335

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            G+AG       LF  M E    P+  T   +++ Y        A  L  +M A K
Sbjct: 336 MGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKK 391



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 36/189 (19%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS--------------------- 42
           +G+  +P  A  LF  ML  GL P+    TALV  YG++                     
Sbjct: 336 MGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMD 395

Query: 43  --------------GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88
                         GL +EA    NDMK    C+PD ++Y+ ++       + +   ++ 
Sbjct: 396 FILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELF 455

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            EM   G++ + +    ++   GKAK+ +++   F   ++  G  PD      ++S    
Sbjct: 456 EEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKR-GVKPDDRLCGCLLSVMAL 514

Query: 149 SGNIEKMEK 157
             + E  EK
Sbjct: 515 CESSEDAEK 523



 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/140 (18%), Positives = 67/140 (47%), Gaps = 1/140 (0%)

Query: 187 YDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           + K  +  ++++ +  FP   + YN+ +++       + +EE   +M   G++ ++ITY 
Sbjct: 166 WQKTHTFFNWVKSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYS 225

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           ++++   +  L  K      ++  + ++ D   ++ I+  Y ++G VE++  L+      
Sbjct: 226 TIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVAT 285

Query: 306 HCVPDNITFATMIQAYNALG 325
              PD I F+ + + +   G
Sbjct: 286 GWKPDAIAFSVLGKMFGEAG 305


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 169/362 (46%), Gaps = 37/362 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ + E+M   G+ P+   YT ++ AYG++G  DEA      MK  + C P+  TY+ 
Sbjct: 368 KEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKE-AGCVPNTCTYNA 426

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K  R + + K+L +M   G   +  T+NT++   G     + +   F  M +S 
Sbjct: 427 VLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREM-KSC 485

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD  T N++ISAYG  G+     K Y E    G  A + T N L  +  R G +   
Sbjct: 486 GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSG 545

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGH---IEKMEEYFKK---------------- 231
            +V+  M+ + F PT  +Y+++++ + K G+   IE++E   K+                
Sbjct: 546 ENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLA 605

Query: 232 ----------------MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                            K  G KP+ + + S++S +++  +  + + IL  +    +  D
Sbjct: 606 NFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPD 665

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +N ++  Y + G+  K  E+  T+++    PD +++ T+I+ +   G+ + A  + +
Sbjct: 666 LVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLS 725

Query: 336 KM 337
           +M
Sbjct: 726 EM 727



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 148/357 (41%), Gaps = 35/357 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A   F  + S G +P    Y AL+  +G++G+  EA S + +M+  S C  D  TY+ 
Sbjct: 298 REAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENS-CPADSVTYNE 356

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +         ++  M+  G+  +A+TY T+ID YGKA K +E    F +M E+G
Sbjct: 357 LVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAG 416

Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                                             GC P+  T N+M++  GN G  + + 
Sbjct: 417 CVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVN 476

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           + + E    G + D  T N L  +YGR G       +   M +  F   V TYN ++   
Sbjct: 477 RVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNAL 536

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            + G     E     MK +G KP   +Y  ++  Y+K G  + ++ I  +++   +    
Sbjct: 537 ARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSW 596

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                ++ A  +   +      F   K+    PD + F +M+  +    M + A+ +
Sbjct: 597 MLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGI 653



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 151/326 (46%), Gaps = 4/326 (1%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A LL ++ L + L   V  YT ++ AY ++G  ++A      MK +    P + TY++++
Sbjct: 195 AKLLDKIPLQEYLL-DVRAYTTILHAYSRTGKYEKAIDLFERMKEMGP-SPTLVTYNVIL 252

Query: 73  KSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
               K  R +  I  +L EM   G++    T +T++    +     E +  F A ++S G
Sbjct: 253 DVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFF-AELKSCG 311

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P   T N+++  +G +G   +      E       AD  T N L  +Y RAG   +  
Sbjct: 312 YEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAA 371

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V++ M K+   P  +TY  VI+ +GKAG  ++  + F  MK  G  PN+ TY +++S  
Sbjct: 372 GVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLL 431

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K     ++  +L  ++++    +   +N +++  G  G  + +  +F  MK     PD 
Sbjct: 432 GKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDR 491

Query: 312 ITFATMIQAYNALGMTEAAQNLENKM 337
            TF T+I AY   G    A  +  +M
Sbjct: 492 DTFNTLISAYGRCGSEVDASKMYGEM 517



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 154/321 (47%), Gaps = 7/321 (2%)

Query: 11  EQASLLFEVML----SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           E+A  LFE ++    S  LK    V    V   G+      A + + D   + +   DV 
Sbjct: 153 ERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVA-AKLLDKIPLQEYLLDVR 211

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSA 125
            Y+ ++ + ++  +++    +   M  +G   + VTYN I+D +GK  + + ++      
Sbjct: 212 AYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDE 271

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M  S G   D FT ++++SA    G + + ++++ E    G +    T N L + +G+AG
Sbjct: 272 M-RSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAG 330

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           +Y +  SV+  M++       VTYN ++  + +AG  ++     + M  +G+ PN+ITY 
Sbjct: 331 VYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYT 390

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +++ AY KAG   +   +   ++ +  + +T  +N ++S  G+     +M ++   MK  
Sbjct: 391 TVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSN 450

Query: 306 HCVPDNITFATMIQAYNALGM 326
            C P+  T+ TM+      GM
Sbjct: 451 GCSPNRATWNTMLALCGNKGM 471



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 149/324 (45%), Gaps = 6/324 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV--SDCKPDVYTYSILIK 73
           +F  M S G +P  D +  L+SAYG+ G   +A     +M     + C   V TY+ L+ 
Sbjct: 478 VFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNAC---VTTYNALLN 534

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
           +  +   +   E ++++M   G + +  +Y+ ++  Y K   +  +E      ++ G   
Sbjct: 535 ALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIER-IENRIKEGQIF 593

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P    L +++ A      +   E+ +  F   G K D+   N +   + R  MYD+   +
Sbjct: 594 PSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGI 653

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           ++ +++    P +VTYN +++ + + G   K EE  K ++   +KP+ ++Y +++  + +
Sbjct: 654 LESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCR 713

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
            GL+ +   +L ++    +      +N  +S Y   G   ++ ++   M +  C P+ +T
Sbjct: 714 RGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELT 773

Query: 314 FATMIQAYNALGMTEAAQNLENKM 337
           F  ++  Y   G    A +  +K+
Sbjct: 774 FKMVVDGYCRAGKYSEAMDFVSKI 797



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 132/286 (46%), Gaps = 2/286 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C     AS ++  M   G    V  Y AL++A  + G      + I+DMKS    KP 
Sbjct: 502 GRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKS-KGFKPT 560

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +YS++++   K   +  IE+I   +    I  S +   T++    K +     E +F+
Sbjct: 561 ETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFT 620

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + +  G  PD+   NSM+S +  +   ++ E         G+  D+ T N L   Y R 
Sbjct: 621 -LFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRR 679

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   K   ++  ++K    P +V+YN VI+ F + G +++      +M  RG++P   TY
Sbjct: 680 GECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTY 739

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            + VS Y+  G+  +++ ++  +  +D   +   F  ++  Y +AG
Sbjct: 740 NTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 785


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 161/344 (46%), Gaps = 16/344 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E+A  L + M  +G +P+  VY AL+  + ++G L+ A      M     C P
Sbjct: 619 LCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYC-P 677

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++YTYS LI S  K  R DL+ K+L++M       + V Y  +IDG  K  K EE     
Sbjct: 678 NLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLM 737

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E  GC+P++ T  +MI  +G  G IE+  + Y +    G   +  T  +L      
Sbjct: 738 LKM-EEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCS 796

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFKKMKHRGMK 238
            G+ D+   ++D M++ ++   + +Y  +IE F +      G ++++ E           
Sbjct: 797 TGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSE-------NESV 849

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSD--VILDTPFFNCIISAYGQAGDVEKMG 296
           P    Y  L+  + KAG +    ++L ++ +S    + +   +  +I +   A  V+K  
Sbjct: 850 PVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAF 909

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           EL+ +M  ++ VP+  TF  +I+    +G  + A  L + +  M
Sbjct: 910 ELYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSICQM 953



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 163/342 (47%), Gaps = 16/342 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A LLFE M  +G+ PSV  YT L+ ++ ++GL+ +A +  ++M    +C P+V TY+ 
Sbjct: 470 EKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLR-DNCTPNVVTYTS 528

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-----------EM 119
           LI +  K  +     K+   M   G + + VTY  +IDG+ KA + +           ++
Sbjct: 529 LIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDI 588

Query: 120 ESSFSAM---VESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           ESS   M   ++   C  P+I T  +++     +  +E+  +  +  ++ G + +    +
Sbjct: 589 ESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYD 648

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L   + + G  +  + V   M +R + P + TY+ +I +  K   ++ + +   KM   
Sbjct: 649 ALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLEN 708

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
              PN + Y  ++    K G   +   ++ ++E      +   +  +I  +G+ G +E+ 
Sbjct: 709 SCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQC 768

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            EL+  M  + C P+ IT+  +I    + G+ + A  L ++M
Sbjct: 769 LELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEM 810



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 166/350 (47%), Gaps = 32/350 (9%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK--------- 56
           K ++   A+ LFE+ML +G KP+V  YTAL+  + ++G +D+A      M+         
Sbjct: 535 KARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDID 594

Query: 57  -----SVSDCK-PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
                  +DC+ P++ TY  L+    K +R +   ++L  MS  G E + + Y+ +IDG+
Sbjct: 595 MYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGF 654

Query: 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
            K  K E  +  F  M E G C P+++T +S+I++      ++ + K  ++        +
Sbjct: 655 CKTGKLENAQEVFVKMSERGYC-PNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPN 713

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           +     +     + G  ++   +M  M++   +P V+TY  +I+ FGK G IE+  E ++
Sbjct: 714 VVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYR 773

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            M  +G  PN ITY  L++     GL+ +   +L +++ +       ++   IS+Y +  
Sbjct: 774 DMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMKQT-------YWPRHISSYRKI- 825

Query: 291 DVEKMGELFLT-------MKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            +E     F+T       + E   VP    +  +I  +   G  E A NL
Sbjct: 826 -IEGFNREFITSIGLLDELSENESVPVESLYRILIDNFIKAGRLEGALNL 874



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 146/324 (45%), Gaps = 8/324 (2%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P    Y  +VS   ++ L  EA   ++ M+S+S C P+V TY IL+  C    +    ++
Sbjct: 270 PDTVFYNRMVSGLCEASLFQEAMDILDRMRSIS-CIPNVVTYRILLSGCLGKGQLGRCKR 328

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA- 145
           IL+ M   G   +   +N+++  Y K++ +      F  M++ G C P     N  I + 
Sbjct: 329 ILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCG-CQPGYLLYNIFIGSI 387

Query: 146 -----YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
                   S  +E  EK Y+E   +GV  +   ++   +    AG +DK   ++  M  +
Sbjct: 388 CSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSK 447

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
            F P   TY+ VI     A  +EK    F++MK  G+ P+  TY  L+ ++ KAGLI + 
Sbjct: 448 GFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQA 507

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            +   ++   +   +   +  +I AY +A  V    +LF  M      P+ +T+  +I  
Sbjct: 508 RNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDG 567

Query: 321 YNALGMTEAAQNLENKMIAMKENS 344
           +   G  + A  +  +M    E+S
Sbjct: 568 HCKAGQIDKACQIYARMQGDIESS 591



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 3/181 (1%)

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T N++I  +  +  ++     + E +  G + D  TL     S  +AG   +    +  +
Sbjct: 207 TYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAG---RCGDALSLL 263

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +K  F P  V YN ++    +A   ++  +   +M+     PN +TY  L+S     G +
Sbjct: 264 EKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQL 323

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            +   IL  +       +   FN ++ AY ++ D     +LF  M +  C P  + +   
Sbjct: 324 GRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIF 383

Query: 318 I 318
           I
Sbjct: 384 I 384



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 69/149 (46%), Gaps = 3/149 (2%)

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
           + LN L +   R GM++     +  ++   +  +  TYN +I+ F +A  ++      ++
Sbjct: 171 KLLNFLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHRE 230

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M + G + +  T      +  KAG   +    L  +E  + + DT F+N ++S   +A  
Sbjct: 231 MSNSGFRMDGCTLGCFAYSLCKAG---RCGDALSLLEKEEFVPDTVFYNRMVSGLCEASL 287

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQA 320
            ++  ++   M+   C+P+ +T+  ++  
Sbjct: 288 FQEAMDILDRMRSISCIPNVVTYRILLSG 316


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 158/333 (47%), Gaps = 5/333 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + + A   F+ MLS G+ P+  +YT L+  +   G   EA ST   M       PD+
Sbjct: 568 KSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLE-KGLIPDI 626

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             YS +I S +K  +      +  +    G+      YN++I G+ K    E+    +  
Sbjct: 627 RAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDE 686

Query: 126 MVESGGCHPDIFTLNSMISAYG--NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           M+ +G  +P+I   N++I+ YG   SGN+ +  K ++E    G+  D     IL    G+
Sbjct: 687 MLHNG-INPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGK 745

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  +K  S+    Q++    ++  +N +I++F K G + +  E F  M  + + PN +T
Sbjct: 746 EGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVT 804

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+ AY KA ++ + + +   +E  ++I +T  +  ++ +Y Q G+  KM  LF  M+
Sbjct: 805 YTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDME 864

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
            R    D I +  M  AY   G +  A  L NK
Sbjct: 865 ARGIACDAIAYGVMASAYCKEGKSLEALKLLNK 897



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 155/328 (47%), Gaps = 4/328 (1%)

Query: 5   GKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   ++A L+FE M S GL P+   YTAL+  + + G ++EA   I D       K
Sbjct: 320 GFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALR-IKDEMITRGLK 378

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            +V TY+ +I    K         +  EM   GIE    TYN +IDGY K+    +    
Sbjct: 379 LNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAK-ACE 437

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             A +++    P  FT + +IS   +S +++K  +  ++    GVK ++     L K+Y 
Sbjct: 438 LLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYV 497

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +   Y+    ++  M      P +  YN +I    +A  +E+ +     M  +G+KPN+ 
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAH 557

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY + ++ YSK+G I   +   + + +S ++ +   +  +I  +   G+  +    F  M
Sbjct: 558 TYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCM 617

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
            E+  +PD   ++ +I + +  G T+ A
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKEA 645



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 170/346 (49%), Gaps = 11/346 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ L + K+ E+A +L   M   G+KP+   Y A ++ Y +SG +  A     DM S S 
Sbjct: 528 IIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLS-SG 586

Query: 61  CKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             P+   Y+ILIK  C   +  + +      M   G+      Y+ II    K  K +E 
Sbjct: 587 IVPNNVIYTILIKGHCDVGNTVEALSTFKC-MLEKGLIPDIRAYSAIIHSLSKNGKTKEA 645

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F   +++ G  PD+F  NS+IS +   G+IEK  + Y+E    G+  +I   N L  
Sbjct: 646 MGVFLKFLKT-GVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLIN 704

Query: 180 SYG--RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            YG  ++G   +   + D M  +   P    Y I+I+  GK G++EK    F + + + +
Sbjct: 705 DYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV 764

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
              S  + SL+ ++ K G +++   +   + +  +  +   +  +I AYG+A  +E+  +
Sbjct: 765 GSLS-AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQ 823

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALG----MTEAAQNLENKMIA 339
           LFL M+ R+ +P+ +T+ +++ +YN +G    M    +++E + IA
Sbjct: 824 LFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIA 869



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 143/314 (45%), Gaps = 2/314 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP++  Y A +    Q+G +DEA   +  +       PD +TY++L+    K  R    +
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALE-VKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAK 331

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            I   M   G+  +  TY  +IDG+ K    EE       M+ + G   ++ T N+MI  
Sbjct: 332 LIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMI-TRGLKLNVVTYNAMIGG 390

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
              +G + K    +NE  + G++ D  T N+L   Y ++    K   ++  M+ R   P+
Sbjct: 391 IAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPS 450

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
             TY+++I     +  ++K  E   +M   G+KPN   Y +L+ AY +         +L+
Sbjct: 451 PFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLK 510

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            +  + V+ D   +NC+I    +A  VE+   L + M E+   P+  T+   I  Y+  G
Sbjct: 511 IMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSG 570

Query: 326 MTEAAQNLENKMIA 339
             + A+     M++
Sbjct: 571 EIQVAERYFKDMLS 584



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 152/328 (46%), Gaps = 2/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  + + M++ GLK +V  Y A++    ++G + +A S  N+M  ++  +PD +TY++
Sbjct: 363 EEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEM-LMAGIEPDTWTYNL 421

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K H      ++LAEM    +  S  TY+ +I G   +   ++       M+ +G
Sbjct: 422 LIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNG 481

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++F   ++I AY      E   +        GV  D+   N L     RA   ++ 
Sbjct: 482 -VKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEA 540

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + ++  M ++   P   TY   I  + K+G I+  E YFK M   G+ PN++ Y  L+  
Sbjct: 541 KMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKG 600

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           +   G  ++  S  + +    +I D   ++ II +  + G  ++   +FL   +   VPD
Sbjct: 601 HCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPD 660

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
              + ++I  +   G  E A  L ++M+
Sbjct: 661 VFLYNSLISGFCKEGDIEKASQLYDEML 688



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 151/319 (47%), Gaps = 8/319 (2%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+   + P V  YT ++ A+ + G + +    +++M+   +CKP+++TY+  I    +  
Sbjct: 233 MVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK--ECKPNLFTYNAFIGGLCQTG 290

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             D   ++   M   G+     TY  ++DG+ K K+ +E +  F +M  S G +P+ FT 
Sbjct: 291 AVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESM-PSSGLNPNRFTY 349

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            ++I  +   GNIE+  +  +E    G+K ++ T N +     +AG   K  S+ + M  
Sbjct: 350 TALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLM 409

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P   TYN++I+ + K+  + K  E   +MK R + P+  TY  L+S    +  + K
Sbjct: 410 AGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQK 469

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
            + +L Q+  + V  +   +  +I AY Q    E   EL   M     +PD   +  +I 
Sbjct: 470 ANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLI- 528

Query: 320 AYNALGMTEAAQNLENKMI 338
               +G+  A +  E KM+
Sbjct: 529 ----IGLCRAKKVEEAKML 543



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 148/324 (45%), Gaps = 4/324 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L   M +  L PS   Y+ L+S    S  L +A   ++ M   +  KP+V+ Y  L
Sbjct: 434 KACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR-NGVKPNVFMYGTL 492

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           IK+  +  R+++  ++L  M   G+      YN +I G  +AKK EE +     M E G 
Sbjct: 493 IKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKG- 551

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P+  T  + I+ Y  SG I+  E+++ +    G+  +     IL K +   G   +  
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEAL 611

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           S    M ++   P +  Y+ +I +  K G  ++    F K    G+ P+   Y SL+S +
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGF 671

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG--QAGDVEKMGELFLTMKERHCVP 309
            K G I K   +  ++ ++ +  +   +N +I+ YG  ++G++ +  +LF  M  +   P
Sbjct: 672 CKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISP 731

Query: 310 DNITFATMIQAYNALGMTEAAQNL 333
           D   +  +I      G  E A +L
Sbjct: 732 DGYIYCILIDGCGKEGNLEKALSL 755



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 145/318 (45%), Gaps = 7/318 (2%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYG--QSGLLDEAFSTINDMKSVSD 60
           G CK+   E+AS L++ ML +G+ P++ VY  L++ YG  +SG L EAF   ++M S   
Sbjct: 670 GFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMIS-KG 728

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD Y Y ILI  C K    +    +  E     +  S   +N++ID + K  K  E  
Sbjct: 729 ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGKVIEAR 787

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  MV+     P+I T   +I AYG +  +E+ E+ + +     +  +  T   L  S
Sbjct: 788 ELFDDMVDKK-LTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLS 846

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y + G   KM S+   M+ R      + Y ++   + K G   +  +   K    G+K  
Sbjct: 847 YNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLE 906

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
              + +L+    K   I  V  +L ++   ++ L +   N ++  + ++G+ ++  ++  
Sbjct: 907 DDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLG 966

Query: 301 TMKERHCVPDNITFATMI 318
            M+    VP +++    I
Sbjct: 967 VMQRLGWVPTSLSLTDSI 984



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 102/213 (47%), Gaps = 8/213 (3%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK  +  +A  LF+ M+   L P++  YT L+ AYG++ +++EA     DM++  +  P+
Sbjct: 778 CKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMET-RNIIPN 836

Query: 65  VYTYSILIKSCTKF-HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESS 122
             TY+ L+ S  +  +RF +I  +  +M   GI C A+ Y  +   Y K  K  E ++  
Sbjct: 837 TLTYTSLLLSYNQIGNRFKMIS-LFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLL 895

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             ++VE      D+F  +++I        I  + +  +E     +    +T N L   + 
Sbjct: 896 NKSLVEGIKLEDDVF--DALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFY 953

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           ++G  D+   V+  MQ+  + PT ++    I T
Sbjct: 954 KSGNEDEASKVLGVMQRLGWVPTSLSLTDSIST 986



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 5/170 (2%)

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           ++ + + Y EF      +++   +I    +   G  ++  SV        FFPT++  N 
Sbjct: 157 LDSLVRCYREFG----GSNLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNN 212

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           ++    KA  +    + +  M    + P+  TY +++ A+ K G ++K   +L ++E  +
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEME-KE 271

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
              +   +N  I    Q G V++  E+   M E+   PD  T+  ++  +
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGF 321


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 149/307 (48%), Gaps = 2/307 (0%)

Query: 32   YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
            Y AL+       L+D A    ++MK +  C PD +TY +++ +  K  R + + KI  EM
Sbjct: 769  YNALICGLVDEDLIDIAEELFSEMKRLG-CDPDEFTYHLILDAMGKSMRIEDMLKIQEEM 827

Query: 92   SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
               G + + VTYNTII G  K+K  +E  + +  ++ S G  P   T   ++      GN
Sbjct: 828  HNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLM-SEGFSPTPCTYGPLLDGLLKDGN 886

Query: 152  IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            IE  E  ++E    G + +    NIL   Y  AG  +K+  + + M ++   P + +Y +
Sbjct: 887  IEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 946

Query: 212  VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
            VI+T    G +     YFK++   G++P+ ITY  L+    K+G + +  S+   +E   
Sbjct: 947  VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKG 1006

Query: 272  VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
            +  +   +N +I   G+AG   + G+++  +  +   P+  T+  +I+ Y+  G  E A 
Sbjct: 1007 IAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAF 1066

Query: 332  NLENKMI 338
                +MI
Sbjct: 1067 AAYGRMI 1073



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 147/328 (44%), Gaps = 2/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A  +++ M +DG+ P+V  Y+ L+ A+G+    +     + +M++    +P+VY+Y+I
Sbjct: 188 REAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEA-RGVRPNVYSYTI 246

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            I+   +  R +   +IL +M   G +   VT   +I     A +  + +  F  M  S 
Sbjct: 247 CIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASD 306

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T  +++   G+SG+   + + +N     G   ++ +      +  + G  D+ 
Sbjct: 307 Q-KPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEA 365

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V D M+++   P   +YN +I  F KA    +  E F  M   G  PN  T+   ++ 
Sbjct: 366 LDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINY 425

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + K+G  +K       +++  ++ D    N ++    + G +     +F  +K     PD
Sbjct: 426 HGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPD 485

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
           NIT+  MI+  +     + A  +  +MI
Sbjct: 486 NITYTMMIKCCSKASNADEAMKIFAEMI 513



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 157/369 (42%), Gaps = 36/369 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M+  GK +  E    L   M + G++P+V  YT  +   GQ+G L+EA+  +  M+    
Sbjct: 213 MLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEE-EG 271

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG--------- 111
           CKPDV T ++LI+      R    + +  +M     +   VTY T++D  G         
Sbjct: 272 CKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVS 331

Query: 112 ------KAKKFEEMESSFSAMVES-------------------GGCHPDIFTLNSMISAY 146
                 KA  + +   S++A V++                    G  P  ++ NS+IS +
Sbjct: 332 EIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGF 391

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +    +  + +N  N+ G   +  T  +    +G++G   K     + M+ +   P V
Sbjct: 392 LKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDV 451

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V  N V+    K G +   +  F ++K  G+ P++ITY  ++   SKA    +   I  +
Sbjct: 452 VAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAE 511

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG- 325
           +  +    D    N +I    +AG   +  ++F  +KE +  P + T+ T++      G 
Sbjct: 512 MIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGK 571

Query: 326 MTEAAQNLE 334
           + E  Q LE
Sbjct: 572 VKEVMQLLE 580



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 148/321 (46%), Gaps = 5/321 (1%)

Query: 1   MVMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           + +L KC         S ++  + +DG   +V  YTA V A  Q G +DEA    ++MK 
Sbjct: 315 ITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQ 374

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
                P  Y+Y+ LI    K  RF+   ++   M+  G   +  T+   I+ +GK+ +  
Sbjct: 375 -KGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESL 433

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +    +  M +S G  PD+   N+++     +G +   ++ ++E   MG+  D  T  ++
Sbjct: 434 KALKRYELM-KSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMM 492

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            K   +A   D+   +   M +    P V+  N +I+   KAG   +  + F ++K   +
Sbjct: 493 IKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNL 552

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +P   TY +L++   + G + +V  +L  + ++    +   +N ++    + G+V    +
Sbjct: 553 EPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALD 612

Query: 298 LFLTMKERHCVPDNITFATMI 318
           +  +M    C+PD  ++ T++
Sbjct: 613 MLYSMTMNGCMPDLSSYNTVM 633



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 113/278 (40%), Gaps = 35/278 (12%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            +GK  + E    + E M + G K +   Y  ++S   +S +LDEA +    + S     P
Sbjct: 811  MGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMS-EGFSP 869

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
               TY  L+    K    +  E +  EM   G E +   YN +++GY  A   E++   F
Sbjct: 870  TPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELF 929

Query: 124  SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
             +MVE G                                  G  PD+ T N +I   G S
Sbjct: 930  ESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKS 989

Query: 150  GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
            G +E+    YN+    G+  ++ T N L    G+AG   +   + + +  + + P V TY
Sbjct: 990  GRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTY 1049

Query: 210  NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            N +I  +  +G  E     + +M   G +PNS TY  L
Sbjct: 1050 NALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 1087



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 112/257 (43%), Gaps = 8/257 (3%)

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
           FDL+++ +       I+ +  T+ T+    G          +   M E+G    + +T N
Sbjct: 124 FDLMQRQI-------IKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVL-NAYTYN 175

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I     SG   +    Y      GV   ++T ++L  ++G+    + +  ++  M+ R
Sbjct: 176 GLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEAR 235

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P V +Y I I   G+AG +E+     +KM+  G KP+ +T   L+     AG +   
Sbjct: 236 GVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADA 295

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +  +++ SD   D   +  ++   G +GD   + E++  +K      + +++   + A
Sbjct: 296 KDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDA 355

Query: 321 YNALGMTEAAQNLENKM 337
              +G  + A ++ ++M
Sbjct: 356 LCQVGRVDEALDVFDEM 372



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/354 (20%), Positives = 134/354 (37%), Gaps = 41/354 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  +F  + + G+ P    YT ++    ++   DEA     +M   + C P
Sbjct: 461 LAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIE-NRCAP 519

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV   + LI    K  R +   KI  E+  + +E +  TYNT++ G G+  K +E+    
Sbjct: 520 DVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLL 579

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  S    P+I T N+++     +G +           + G   D+ + N +     +
Sbjct: 580 EGM-NSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVK 638

Query: 184 AGMYDKMRSVMDFMQ-KRFFFPTVVTYNIVIETFGKAGHI-------------------- 222
               D+  +   F Q K+   P   T   ++ +F ++G +                    
Sbjct: 639 EDRLDE--AFWMFCQMKKVLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVDR 696

Query: 223 ----------------EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
                           EK  E+ + +   G+  + +    ++    K    +    ++++
Sbjct: 697 SSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHELVKK 756

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            EN  V L T  +N +I        ++   ELF  MK   C PD  T+  ++ A
Sbjct: 757 FENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDA 810



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 84/205 (40%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           ++ T  ++  A G  G +             G+  +  T N L     ++G   +   V 
Sbjct: 135 NVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVY 194

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             M      PTV TY++++  FGK    E +     +M+ RG++PN  +Y   +    +A
Sbjct: 195 KAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQA 254

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G + +   ILR++E      D      +I     AG +    ++F  MK     PD +T+
Sbjct: 255 GRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTY 314

Query: 315 ATMIQAYNALGMTEAAQNLENKMIA 339
            T++      G + +   + N + A
Sbjct: 315 ITLLDKCGDSGDSRSVSEIWNALKA 339



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 9/201 (4%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
           ++ A+G  G++ ++      F+LM    +KA++ T   +  + G  G        +  M+
Sbjct: 110 LMRAHGRVGDVAQV------FDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMK 163

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +        TYN +I    K+G   +  + +K M   G+ P   TY  L+ A+ K     
Sbjct: 164 EAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAE 223

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
            V  +L ++E   V  +   +   I   GQAG +E+   +   M+E  C PD +T   +I
Sbjct: 224 TVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLI 283

Query: 319 QAYNALGMTEAAQNLENKMIA 339
           Q     G    A+++  KM A
Sbjct: 284 QILCDAGRLADAKDVFWKMKA 304



 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            ++ LGK  +  +A  ++E +L+ G KP+V  Y AL+  Y  SG  + AF+    M  V  
Sbjct: 1018 ILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRM-IVGG 1076

Query: 61   CKPDVYTY 68
            C+P+  TY
Sbjct: 1077 CRPNSSTY 1084


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 161/380 (42%), Gaps = 57/380 (15%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +   M+ +G  P    Y+ ++     +  ++ AF    +MK  +   PDVYTY+I
Sbjct: 471 EKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKG-TGVVPDVYTYTI 529

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI   +K          L EM   G E + VTY T+I  Y KAKK       F  M+ + 
Sbjct: 530 LIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMI-AK 588

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF----------------NLMGVKADIQTL 174
           GC P++ T  ++I  Y  SGNIEK  + Y                   N +  K ++ T 
Sbjct: 589 GCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTY 648

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
             L     +A      R +++ M      P  + Y+ +I+ F KA  +++ +E F KM  
Sbjct: 649 GALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVE 708

Query: 235 RGMKPNSITYCSLVSAY---SKAGLIMKVDSILRQVENS---DVILDTPF---------- 278
            G  PN  TY SL+       +  L++KV S  + +ENS   ++++ T            
Sbjct: 709 HGYNPNVYTYSSLIDRLFKDKRLDLVLKVLS--KMLENSCAPNIVIYTEMIDGLSKVAKT 766

Query: 279 ---------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
                                +  +I  +G+AG V+K  ELF  M  + C P+ +T+  +
Sbjct: 767 DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVL 826

Query: 318 IQAYNALGMTEAAQNLENKM 337
           I    A G  + A  L  +M
Sbjct: 827 INHCCATGHLDEAYALLEEM 846



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 159/351 (45%), Gaps = 16/351 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + + A  L E M  DG +P+  VY AL+  + ++  LDEA    + M       P
Sbjct: 655 LCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVE-HGYNP 713

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +VYTYS LI    K  R DL+ K+L++M       + V Y  +IDG  K  K +E     
Sbjct: 714 NVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDE-AYKL 772

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+E  GC P++ T  +MI  +G +G ++K  + + E    G   +  T  +L      
Sbjct: 773 MLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCA 832

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GHIEKMEEYFKKMKHRGMK 238
            G  D+  ++++ M++ ++   V +Y  VIE + +      G +E++E+        G  
Sbjct: 833 TGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEK-------NGSA 885

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP--FFNCIISAYGQAGDVEKMG 296
           P  + Y  L+  + KAG +     + ++V ++ + +      +  +I ++  A  +    
Sbjct: 886 PIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAF 945

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
           ELF  M     +PD  TF  ++     +   E A  L + +  M  N  ++
Sbjct: 946 ELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSLCQMDINWLRR 996



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 162/360 (45%), Gaps = 36/360 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+CK+      +  +M+++G  PS  ++ +LV AY +S     A+  +  M+   +CKP
Sbjct: 359 LGRCKR------ILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKC-ECKP 411

Query: 64  DVYTYSILIKS-CTKFH-----RFDLIEKILAEMSYLGI---ECSAVTYNTIIDGYGKAK 114
               Y+ILI S C+         F+L EK   EM   G    + + V++   + G+GK  
Sbjct: 412 GYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGK-- 469

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
            FE+       M+ +G   PD  T + +I    N+  +E     + E    GV  D+ T 
Sbjct: 470 -FEKAYKVIHEMMGNGFV-PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTY 527

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
            IL   + +AG+  +  + +D M +    PTVVTY  +I  + KA  +    E F+ M  
Sbjct: 528 TILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIA 587

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI---------ISA 285
           +G  PN ITY +L+  Y K+G I K   I  ++     I D   +  I         +  
Sbjct: 588 KGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVT 647

Query: 286 YG-------QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           YG       +A  V+   +L  TM    C P+ I +  +I  +      + AQ + +KM+
Sbjct: 648 YGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMV 707



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 151/346 (43%), Gaps = 56/346 (16%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC---- 61
           K K+   A+ LFE+M++ G  P+V  YTAL+  Y +SG +++A      M+  +D     
Sbjct: 571 KAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVD 630

Query: 62  -----------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
                      KP+V TY  L+    K H+      +L  M   G E + + Y+ +IDG+
Sbjct: 631 MYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGF 690

Query: 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
            KA K +E +  F  MVE G  +P+++T +S+I            ++ + +  L      
Sbjct: 691 CKAAKLDEAQEVFHKMVEHGY-NPNVYTYSSLI------------DRLFKDKRL------ 731

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
                            D +  V+  M +    P +V Y  +I+   K    ++  +   
Sbjct: 732 -----------------DLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLML 774

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            M+ +G KPN +TY +++  + KAG + K   + R++ +     +   +  +I+     G
Sbjct: 775 MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATG 834

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYN-----ALGMTEAAQ 331
            +++   L   MK+ +      ++  +I+ Y      +LG+ E  +
Sbjct: 835 HLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVE 880



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 126/323 (39%), Gaps = 51/323 (15%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P+  +Y  ++S   ++   +EA   +N M+S S C P+V TY IL+  C    +    ++
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTS-CIPNVQTYRILLCGCLNKKQLGRCKR 364

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           IL+ M   G   S   +N+++  Y K+  F         M E   C P     N +I + 
Sbjct: 365 ILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKM-EKCECKPGYVVYNILIGSI 423

Query: 147 GNSGNI------EKMEKWYNEFNLMGVKADIQTLNILTKSYGRA----GMYDKMRSVMDF 196
            + G +      E  EK YNE  ++     +  +N++  S+ R     G ++K   V+  
Sbjct: 424 CSGGELPGPVTFELAEKAYNE--MLSAGTVLNKVNVV--SFARCLCGFGKFEKAYKVIHE 479

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M    F P   TY+ VI     A  +E     FK+MK  G+ P+  TY  L         
Sbjct: 480 MMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTIL--------- 530

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                                     I  + +AG +++       M    C P  +T+ T
Sbjct: 531 --------------------------IDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTT 564

Query: 317 MIQAYNALGMTEAAQNLENKMIA 339
           +I AY        A  L   MIA
Sbjct: 565 LIHAYLKAKKVSVANELFELMIA 587



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 148/389 (38%), Gaps = 79/389 (20%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G KP+   Y ALV  + ++  LD A     +M  +     D +T     ++  K  ++  
Sbjct: 236 GYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELG-LSMDEFTLGFFAQALCKVGKWRE 294

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-------MESS-------------- 122
              ++ +  ++    + + YN +I G  +A  FEE       M S+              
Sbjct: 295 ALSLIEKEDFVP---NTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLC 351

Query: 123 -------------FSAMVESGGCHPDIFTLNSMISAYGNSGN-------IEKMEKW---- 158
                          +M+ + GC+P     NS++ AY  S +       ++KMEK     
Sbjct: 352 GCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKP 411

Query: 159 -YNEFNLM-------GVKADIQTLNILTKSYGRA----------------------GMYD 188
            Y  +N++       G      T  +  K+Y                         G ++
Sbjct: 412 GYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFE 471

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K   V+  M    F P   TY+ VI     A  +E     FK+MK  G+ P+  TY  L+
Sbjct: 472 KAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILI 531

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             +SKAG+I +  + L ++           +  +I AY +A  V    ELF  M  + C 
Sbjct: 532 DCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCF 591

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKM 337
           P+ IT+  +I  Y   G  E A  +  +M
Sbjct: 592 PNVITYTALIDGYCKSGNIEKACQIYARM 620



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 131/342 (38%), Gaps = 40/342 (11%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           L+    ++GL + A   +  +K     KP   TY+ L++   +  + D  + +  EMS L
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFG-YKPTRMTYNALVQVFLRADKLDTAQLVHREMSEL 270

Query: 95  GIE-------------C-------------------SAVTYNTIIDGYGKAKKFEEMESS 122
           G+              C                   + + YN +I G  +A  FEE    
Sbjct: 271 GLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDF 330

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M  S  C P++ T   ++    N   + + ++  +     G        N L  +Y 
Sbjct: 331 LNRM-RSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYC 389

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI------EKMEEYFKKMKHRG 236
           ++  +     ++  M+K    P  V YNI+I +    G +      E  E+ + +M   G
Sbjct: 390 KSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAG 449

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
              N +   S        G   K   ++ ++  +  + DT  ++ +I     A  VE   
Sbjct: 450 TVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAF 509

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            LF  MK    VPD  T+  +I  ++  G+ + A N  ++M+
Sbjct: 510 FLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMV 551



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
           + LN+L +   R G+++     +  ++   + PT +TYN +++ F +A  ++  +   ++
Sbjct: 207 KLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHRE 266

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M   G+  +  T      A  K G   K    L  +E  D + +T  +N +IS   +A  
Sbjct: 267 MSELGLSMDEFTLGFFAQALCKVG---KWREALSLIEKEDFVPNTILYNKMISGLCEASF 323

Query: 292 VEKMGELFLTMKERHCVPDNITFATMI 318
            E+  +    M+   C+P+  T+  ++
Sbjct: 324 FEEAMDFLNRMRSTSCIPNVQTYRILL 350



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/250 (18%), Positives = 93/250 (37%), Gaps = 39/250 (15%)

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           ++LI+ C +   +++  + L  +   G + + +TYN ++  + +A K +  +     M E
Sbjct: 210 NVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSE 269

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                                               +G+  D  TL    ++  + G   
Sbjct: 270 ------------------------------------LGLSMDEFTLGFFAQALCKVG--- 290

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K R  +  ++K  F P  + YN +I    +A   E+  ++  +M+     PN  TY  L+
Sbjct: 291 KWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILL 350

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                   + +   IL  +           FN ++ AY ++ D     +L   M++  C 
Sbjct: 351 CGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECK 410

Query: 309 PDNITFATMI 318
           P  + +  +I
Sbjct: 411 PGYVVYNILI 420


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 151/314 (48%), Gaps = 26/314 (8%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--KPDVYTY 68
           E  +L  E  L+  +KP    Y AL+  Y +   L  A   +++M   S C   PD  TY
Sbjct: 281 EAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEM---SQCGVAPDEATY 337

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S+L+ + T+  R++    +L EM   G++ S+  ++ I+ G+     +++  +    M +
Sbjct: 338 SLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREM-Q 396

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           + G  PD    N MI  +G    +      +N+    G++ D+ T N L  ++ + G +D
Sbjct: 397 ASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHD 456

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   + + M++    P   TYNI+I   G+  H E +E    +MK +G+ PN ITY +LV
Sbjct: 457 RAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLV 516

Query: 249 SAYSKAGLIMK-VDSILRQVENSDVILDTP-FFNCIISAYGQAGDVEKMGELFLTMKERH 306
             Y ++G   + +D I  +   +D +  +P  ++ +++AY Q G                
Sbjct: 517 DVYGRSGRYKEAIDCI--EAMKADGLKPSPTMYHALVNAYAQRG---------------- 558

Query: 307 CVPDNITFATMIQA 320
             PD IT+ T+++A
Sbjct: 559 LRPDVITYTTLMKA 572



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 145/322 (45%), Gaps = 1/322 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            +   P+ A  L     + GL P  +  TAL+SA G +G + EA +   +     + KP 
Sbjct: 239 ARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPR 298

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+ L+K   +       E++L EMS  G+     TY+ ++D Y +A ++E       
Sbjct: 299 TRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLK 358

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+ G  P  +  + +++ + + G+ +K      E    GV+ D    N++  ++G+ 
Sbjct: 359 EM-EADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKY 417

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
                     + M++    P VVT+N +I+   K G  ++  E F++M+     P + TY
Sbjct: 418 NCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTY 477

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +++   +      V+++L +++   ++ +   +  ++  YG++G  ++  +    MK 
Sbjct: 478 NIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKA 537

Query: 305 RHCVPDNITFATMIQAYNALGM 326
               P    +  ++ AY   G+
Sbjct: 538 DGLKPSPTMYHALVNAYAQRGL 559



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 26/269 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M++ S  +PD + Y++
Sbjct: 351 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQA-SGVRPDRHFYNV 409

Query: 71  LIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +I +  K+    H  D   K+  E    GIE   VT+NT+ID + K  + +     F  M
Sbjct: 410 MIDTFGKYNCLGHAMDAFNKMREE----GIEPDVVTWNTLIDAHCKGGRHDRAAELFEEM 465

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            ES  C P   T N MI+  G   + E +E   +E    G+  +I T   L   YGR+G 
Sbjct: 466 RESN-CPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGR 524

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y +    ++ M+     P+   Y+ ++  + +                RG++P+ ITY +
Sbjct: 525 YKEAIDCIEAMKADGLKPSPTMYHALVNAYAQ----------------RGLRPDVITYTT 568

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILD 275
           L+ A  +     KV  I  ++  S    D
Sbjct: 569 LMKALIRVEQFDKVPVIYEEMITSGCAPD 597



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 139/323 (43%), Gaps = 43/323 (13%)

Query: 60  DCKPDVYTYSILIKSCTKFHRFD---LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           D  PD+ +YS L+ S           L+E++L ++    +E  A  ++ +I  + +A   
Sbjct: 185 DFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAA-L 243

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLN 175
            +      A  ++ G  P    + ++ISA G +G + + E  + EF L G +K   +  N
Sbjct: 244 PDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYN 303

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L K Y R         V+D M +    P   TY+++++ + +AG  E      K+M+  
Sbjct: 304 ALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEAD 363

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ------- 288
           G+KP+S  +  +++ +   G   K  ++LR+++ S V  D  F+N +I  +G+       
Sbjct: 364 GVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHA 423

Query: 289 ----------------------------AGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
                                        G  ++  ELF  M+E +C P   T+  MI  
Sbjct: 424 MDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMI-- 481

Query: 321 YNALGMTEAAQNLENKMIAMKEN 343
            N LG  E  + +E  +  MKE 
Sbjct: 482 -NLLGEQEHWEGVEAMLSEMKEQ 503



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 17/87 (19%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  + ++A    E M +DGLKPS  +Y ALV+AY Q GL                 +PD
Sbjct: 520 GRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGL-----------------RPD 562

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEM 91
           V TY+ L+K+  +  +FD +  I  EM
Sbjct: 563 VITYTTLMKALIRVEQFDKVPVIYEEM 589


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 152/328 (46%), Gaps = 2/328 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K    ++A  ++ VM   GL+P    +  L++A+ ++  +D  +    +M++  +C P+V
Sbjct: 101 KAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQN-QNCSPNV 159

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TYSILI +  K    +   K+  +M   G   +  TY ++IDG GK+   ++    F  
Sbjct: 160 ITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEE 219

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M   G     +   NS+I   G SG  +   K + E    G++ D  T   L    G AG
Sbjct: 220 MTSEGLVATRV-VYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAG 278

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              + R +    +       V  YN++I+T  K+  +++  E F +++  G+ P+  T+ 
Sbjct: 279 RASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFN 338

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L+    K+G I     +L  ++ +    D   +N +I    ++G VE+ G+L L M+  
Sbjct: 339 ALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSL 398

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNL 333
              PD +T+ T+I      G  E A  L
Sbjct: 399 GYEPDVVTYNTLIDESCKGGRIEDALRL 426



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 11/334 (3%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC   E+A  +F  M S G +P++  YT+++   G+SG +D+AF    +M S       V
Sbjct: 171 KCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRV 230

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             Y+ LI    +  R D   K+  EM   G++   VT+ +++ G G A +  E    F  
Sbjct: 231 -VYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQE 289

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
             + G C  D+   N +I     S  +++  + + E    G+  D+ T N L     ++G
Sbjct: 290 ARDVG-CALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSG 348

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
                  ++  M++    P V  YN +I+   K+G +E+  +   +M+  G +P+ +TY 
Sbjct: 349 RIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYN 408

Query: 246 SLVSAYSKAGLIMKVDSILRQVE--NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           +L+    K G   +++  LR  E  ++    +T  +N I++    AG V++  +LF  MK
Sbjct: 409 TLIDESCKGG---RIEDALRLFEEISAKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMK 465

Query: 304 ERHC----VPDNITFATMIQAYNALGMTEAAQNL 333
           +        PD +T+ T++      G++E A +L
Sbjct: 466 QETVDGVIDPDFVTYTTLLNGARQAGLSELANSL 499



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 151/332 (45%), Gaps = 3/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K+ +    LFE M +    P+V  Y+ L+ A  + G +++A     DMKS   C+P++
Sbjct: 136 KAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKS-RGCRPNI 194

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           +TY+ +I    K    D    +  EM+  G+  + V YN++I G G++ + +     F  
Sbjct: 195 FTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFRE 254

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+ S G  PD  T  S++   G +G   +  + + E   +G   D+   N+L  +  ++ 
Sbjct: 255 ML-SKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSK 313

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D+   +   +++    P V T+N +++   K+G I         MK  G  P+   Y 
Sbjct: 314 RLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYN 373

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L+    K+G + +   +L ++++     D   +N +I    + G +E    LF  +  +
Sbjct: 374 TLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAK 433

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               + +T+ T++      G  + A  L N M
Sbjct: 434 G-FANTVTYNTILNGLCMAGRVDEAYKLFNGM 464



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 139/299 (46%), Gaps = 10/299 (3%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           L+P +  +  L   Y  +GLL+++   +  M+    C      Y+ LI +   F +    
Sbjct: 52  LQPRI--FIELARGYASAGLLEKSVEALKRMEG-HRCALTASAYNSLIDA---FVKAGYT 105

Query: 85  EKILAE---MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           +K LA    M   G+     T+N +++ + KAK+ + +   F  M ++  C P++ T + 
Sbjct: 106 QKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEM-QNQNCSPNVITYSI 164

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I A    G +EK  K + +    G + +I T   +    G++G  DK   + + M    
Sbjct: 165 LIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEG 224

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
              T V YN +I   G++G  +   + F++M  +G++P+ +T+ SLV     AG   +  
Sbjct: 225 LVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEAR 284

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            I ++  +    LD   +N +I    ++  +++  E+F  ++E   VPD  TF  ++  
Sbjct: 285 RIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDG 343



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 1/225 (0%)

Query: 109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
           GY  A   E+   +   M E   C       NS+I A+  +G  +K    Y      G++
Sbjct: 63  GYASAGLLEKSVEALKRM-EGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLR 121

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            D  T N+L  ++ +A   D +  + + MQ +   P V+TY+I+I+   K G +EK  + 
Sbjct: 122 PDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKV 181

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F  MK RG +PN  TY S++    K+G + K   +  ++ +  ++     +N +I   G+
Sbjct: 182 FLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGR 241

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +G  +   +LF  M  +   PD++TF +++      G    A+ +
Sbjct: 242 SGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRI 286



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 79/154 (51%)

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L + Y  AG+ +K    +  M+      T   YN +I+ F KAG+ +K    ++ M   G
Sbjct: 60  LARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSG 119

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           ++P++ T+  L++A+ KA  +  V  +  +++N +   +   ++ +I A  + G VEK  
Sbjct: 120 LRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKAL 179

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           ++FL MK R C P+  T+ +MI      G  + A
Sbjct: 180 KVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKA 213



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 105/236 (44%), Gaps = 3/236 (1%)

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGG-CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
           T+++  G A++F E E   + + +S     P IF    +   Y ++G +EK  +      
Sbjct: 24  TLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFI--ELARGYASAGLLEKSVEALKRME 81

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
                      N L  ++ +AG   K  +V   M +    P   T+N+++  F KA  ++
Sbjct: 82  GHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVD 141

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
            + + F++M+++   PN ITY  L+ A  K G + K   +   +++     +   +  +I
Sbjct: 142 SVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMI 201

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              G++G V+K   LF  M     V   + + ++I      G  +AA  L  +M++
Sbjct: 202 DGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLS 257


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 2/314 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P+   Y  +++ +   G +  A   + +M+      P+ YTY  +I    K  R D   
Sbjct: 142 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 201

Query: 86  KILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           K+  EM   G ++  AV YN +I GY    K +        MVE G     + T N ++ 
Sbjct: 202 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM-TVATYNLLVH 260

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A    G   +  +   E    G+  D+ T NIL   + + G   K   + + M +R    
Sbjct: 261 ALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 320

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           TVVTY  +I    K G +++ ++ F +   RG++P+ + Y +L++++S +G I +   I+
Sbjct: 321 TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIM 380

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++E   +  D   +N ++      G V++  +L   M ER   PD +T+ T+I  Y+  
Sbjct: 381 GEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMK 440

Query: 325 GMTEAAQNLENKMI 338
           G  + A  + N+M+
Sbjct: 441 GDVKDALRIRNEMM 454



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 159/344 (46%), Gaps = 15/344 (4%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V+ G CK  + ++A  +F+ ML+ G +KP   +Y AL+  Y   G LD A     D    
Sbjct: 187 VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL-LYRDRMVE 245

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
                 V TY++L+ +     R     +++ EM   G+     TYN +I+G+ K    ++
Sbjct: 246 RGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKK 305

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  M   G     + T  ++I A    G +++ +K ++E    G++ D+   N L 
Sbjct: 306 ALEIFENMSRRG-VRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI 364

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            S+  +G  D+   +M  M+K+   P  VTYN ++      G +++  +   +M  RG++
Sbjct: 365 NSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 424

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY---GQAGDVEKM 295
           P+ +TY +L+S YS  G +     I  ++ N         +N +I      GQ  D E M
Sbjct: 425 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 484

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +    M E    PD+ T+ ++I+       TE  + ++++ +A
Sbjct: 485 VK---EMVENGITPDDSTYISLIEGLT----TEDERAIDDERLA 521


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 157/358 (43%), Gaps = 37/358 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+   +   M   G  P + +Y  ++    + G L  A   +N M S    KP+V  Y+ 
Sbjct: 279 ERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYG-LKPNVVCYNT 337

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+K      R++  E++LAEM         VT+N ++D + +    + +      M+  G
Sbjct: 338 LLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHG 397

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKM-----------------------------EKWYNE 161
            C PD+ T  ++I+ +   G I++                              E+W + 
Sbjct: 398 -CMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDA 456

Query: 162 FNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            +LM      G   +  T N L     + G+ ++   ++  M      P +++Y+ VI+ 
Sbjct: 457 EDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 516

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
            GKAG  ++  E    M ++GM PN+I Y S+ SA S+ G I KV  +   ++++ +  D
Sbjct: 517 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSD 576

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
              +N +IS+  + G+ E+  E    M    CVP+  T+  +I+   + G  + AQ +
Sbjct: 577 AVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEM 634



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 148/339 (43%), Gaps = 37/339 (10%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           +++A    G +D+A   + D+ S   C+PDV +Y+ ++K      R+  +++++ EM  +
Sbjct: 198 VLNAICDQGSVDKALHLLRDLPSFG-CEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRM 256

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
               + VT+NT+I    +   FE +    + M E G C PDI    ++I      G+++ 
Sbjct: 257 ACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHG-CTPDIRMYATIIDGICKEGHLKV 315

Query: 155 MEKWYNEFNLMGVKADIQ-----------------------------------TLNILTK 179
             +  N     G+K ++                                    T NIL  
Sbjct: 316 AHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVD 375

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + + G+ D++  +++ M      P V+TY  VI  F K G I++     K M   G KP
Sbjct: 376 FFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKP 435

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N+I+Y  ++     A   +  + ++ Q+      L+   FN +I+   + G VE+  EL 
Sbjct: 436 NTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELL 495

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M    C PD I+++T+I      G T+ A  L N M+
Sbjct: 496 KQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMV 534



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 141/320 (44%), Gaps = 12/320 (3%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           + P+   Y  +V A    G + +A + +++M     C P    Y +++++  +   F   
Sbjct: 118 VPPNAYTYFPVVRALCARGRIADALAVLDEMPR-RGCAPIPPMYHVILEAACRGGGFRSA 176

Query: 85  EKILAEMSYLGI-----ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
            ++L ++   G       C+ V  N I D     K    +       + S GC PD+ + 
Sbjct: 177 VRVLEDLHARGCALDVGNCNLV-LNAICDQGSVDKALHLLRD-----LPSFGCEPDVVSY 230

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N+++     +     +++   E   M    +I T N L     R G+++++  V+  M +
Sbjct: 231 NAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAE 290

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P +  Y  +I+   K GH++   E   +M   G+KPN + Y +L+     A    +
Sbjct: 291 HGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEE 350

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
            + +L ++ + D  LD   FN ++  + Q G V+++ EL   M    C+PD IT+ T+I 
Sbjct: 351 TEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVIN 410

Query: 320 AYNALGMTEAAQNLENKMIA 339
            +   G+ + A  L   M A
Sbjct: 411 GFCKEGLIDEAVMLLKSMTA 430



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 118/252 (46%), Gaps = 2/252 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L E ML  G  P V  YT +++ + + GL+DEA   +  M +   CKP+  +Y+I++K  
Sbjct: 389 LLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG-CKPNTISYTIVLKGL 447

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               R+   E ++++M   G   + +T+NT+I+   K    E+       M+ +G C PD
Sbjct: 448 CSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNG-CSPD 506

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + + +++I   G +G  ++  +  N     G+  +    + +  +  R G  +K+  + D
Sbjct: 507 LISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFD 566

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            +Q        V YN VI +  K G  E+  E+   M   G  PN  TY  L+   +  G
Sbjct: 567 NIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEG 626

Query: 256 LIMKVDSILRQV 267
            + +   +L ++
Sbjct: 627 FVKEAQEMLTEL 638



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 4/235 (1%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           YN ++ GY +A + E      +A+       P+ +T   ++ A    G I       +E 
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAVPVP----PNAYTYFPVVRALCARGRIADALAVLDEM 148

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              G        +++ ++  R G +     V++ +  R     V   N+V+      G +
Sbjct: 149 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 208

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           +K     + +   G +P+ ++Y +++     A     V  ++ ++       +   FN +
Sbjct: 209 DKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 268

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           IS   + G  E++ E+   M E  C PD   +AT+I      G  + A  + N+M
Sbjct: 269 ISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRM 323



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 3/166 (1%)

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N +   Y RAG  +  R +   +      P   TY  V+      G I        +M  
Sbjct: 94  NAMVAGYCRAGQLESARRLAAAVP---VPPNAYTYFPVVRALCARGRIADALAVLDEMPR 150

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           RG  P    Y  ++ A  + G       +L  +      LD    N +++A    G V+K
Sbjct: 151 RGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDK 210

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
              L   +    C PD +++  +++           Q L  +M+ M
Sbjct: 211 ALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRM 256



 Score = 41.6 bits (96), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 1/128 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + ++A  L  VM++ G+ P+  +Y+++ SA  + G +++     ++++  +  + 
Sbjct: 517 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTT-IRS 575

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   Y+ +I S  K    +   + LA M   G   +  TY  +I G       +E +   
Sbjct: 576 DAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEML 635

Query: 124 SAMVESGG 131
           + +   G 
Sbjct: 636 TELCSKGA 643


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 157/318 (49%), Gaps = 2/318 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++  +A  +F  M +  + P++  YT+L+          EA + +N+M S+ +  P
Sbjct: 125 LCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSL-NIMP 183

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V T+++L+ +  K  +    E +L  M+ +G+E   VTYN+++ GY    +  E    F
Sbjct: 184 NVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLF 243

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ + GC PD+F+ + +I+ Y  +  I++ ++ +NE    G   +  + N L     +
Sbjct: 244 DVMI-TKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQ 302

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   + + +   M      P + TY I+++ F K G++ K    F+ M+   +KPN + 
Sbjct: 303 LGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVM 362

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  LV+A  K+G +     +  ++    +  +   +  II+   + G +++  E F  M+
Sbjct: 363 YNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNME 422

Query: 304 ERHCVPDNITFATMIQAY 321
           +  C PD  ++  +I+ +
Sbjct: 423 DDGCPPDEFSYNVIIRGF 440



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 162/337 (48%), Gaps = 8/337 (2%)

Query: 5   GKCKQPEQA--SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E A  + LF+ M   G + +V  Y+ L+ +  +   ++EA    + MK+  D  
Sbjct: 89  GLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKA-KDIS 147

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P ++TY+ LI+    F R+     +L EM+ L I  + VT+N ++D + K  K    E  
Sbjct: 148 PTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGV 207

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E G   PD+ T NS++  Y     + +  K ++     G K D+ + +IL   Y 
Sbjct: 208 LKTMTEMG-VEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYC 266

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A   D+ + + + M  +   P  V+YN +I    + G + + ++ FK M   G  PN  
Sbjct: 267 KAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLY 326

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+  + K G + K   + R ++++ +  +   +N +++A  ++G+++   ELF  +
Sbjct: 327 TYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSEL 386

Query: 303 KERHCVPDNITFATMIQAYNALGM----TEAAQNLEN 335
                 P+   + T+I      G+     EA +N+E+
Sbjct: 387 FVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMED 423



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 156/337 (46%), Gaps = 2/337 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  +  QA  LF+ M++ G +P    YT +++   + G    A      M+  + C+ 
Sbjct: 55  LGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEE-AGCQL 113

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TYS LI S  K+ R +    I + M    I  +  TY ++I G     +++E  +  
Sbjct: 114 NVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALL 173

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M  S    P++ T N ++  +   G +   E        MGV+ D+ T N L   Y  
Sbjct: 174 NEMT-SLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSM 232

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
                + R + D M  +   P V +Y+I+I  + KA  I++ ++ F +M H+G  PN+++
Sbjct: 233 WTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVS 292

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+    + G + +   + + +  +  + +   +  ++  + + G + K   LF  M+
Sbjct: 293 YNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQ 352

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             +  P+ + +  ++ A    G  + A+ L +++  +
Sbjct: 353 STYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVI 389



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 128/276 (46%), Gaps = 1/276 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+  T +ILI    +  R DL   +LA+   LG++ + VT+ T+I+G GK  KF +    
Sbjct: 8   PNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVEL 67

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV + GC PD +T  ++I+     G        + +    G + ++ T + L  S  
Sbjct: 68  FDDMV-ARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLC 126

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    ++   +  +M+ +   PT+ TY  +I+        ++      +M    + PN +
Sbjct: 127 KYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVV 186

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+  LV  + K G ++  + +L+ +    V  D   +N ++  Y    +V +  +LF  M
Sbjct: 187 TFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVM 246

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             + C PD  +++ +I  Y      + A+ L N+MI
Sbjct: 247 ITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMI 282



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 139/314 (44%), Gaps = 2/314 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P+      L++ + Q   +D  FS +     +   +P + T++ LI    K  +F  
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLG-LQPTIVTFTTLINGLGKVGKFAQ 63

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             ++  +M   G +    TY TII+G  K  +       F  M E  GC  ++ T +++I
Sbjct: 64  AVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKM-EEAGCQLNVVTYSTLI 122

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            +      + +    ++      +   I T   L +       + +  ++++ M      
Sbjct: 123 HSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIM 182

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVT+N++++TF K G +   E   K M   G++P+ +TY SL+  YS    +++   +
Sbjct: 183 PNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKL 242

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              +       D   ++ +I+ Y +A  +++  +LF  M  +   P+N+++ T+I     
Sbjct: 243 FDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQ 302

Query: 324 LGMTEAAQNLENKM 337
           LG    AQ+L   M
Sbjct: 303 LGRLREAQDLFKNM 316



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 81/177 (45%)

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
           L G+  +  TLNIL   + +    D   SV+    K    PT+VT+  +I   GK G   
Sbjct: 3   LAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFA 62

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
           +  E F  M  RG +P+  TY ++++   K G       + +++E +   L+   ++ +I
Sbjct: 63  QAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLI 122

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +  +   V +  ++F  MK +   P   T+ ++IQ        + A  L N+M ++
Sbjct: 123 HSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSL 179


>gi|359488082|ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Vitis vinifera]
          Length = 498

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 4/328 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  E+A+ + ++M+  G  P +  Y  LV    + GLL  A   +++M S+S C P
Sbjct: 84  LIKLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEM-SLSGCPP 142

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESS 122
           D  TY+ +++       FD       +    G     +TY  +I+   K     + ME  
Sbjct: 143 DAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVL 202

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
               +E  GC+PDI T NS+++     G  E            G+  +  T N L  S  
Sbjct: 203 EDMAIE--GCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLC 260

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G +D++  ++  M      PTVVTYNI+I    K G +++   +F +M      P+ I
Sbjct: 261 THGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDII 320

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L++A  K G++ +   +L  + ++        +N +I    + G +EK  EL+  M
Sbjct: 321 TYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEM 380

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
            ER   PD+IT  T+      L + E A
Sbjct: 381 IERGFAPDDITHRTLFWGLFRLDLVEDA 408



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 147/331 (44%), Gaps = 2/331 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA   ++  L  G    +  YT L+    +     +A   + DM ++  C PD+ TY+ 
Sbjct: 161 DQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDM-AIEGCYPDIVTYNS 219

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  +++    I+  +   G+  + VTYNT++        ++E++     M  + 
Sbjct: 220 LVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIM-NTT 278

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P + T N +I+     G +++   ++++        DI T N L  +  + GM D+ 
Sbjct: 279 SQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEA 338

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  +      P ++TYNIVI+   K G +EK  E + +M  RG  P+ IT+ +L   
Sbjct: 339 LHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWG 398

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +  L+     IL+++   +  +    F  +I    +   V+   ++   M    C P+
Sbjct: 399 LFRLDLVEDALVILKEMNKRNQRIKNSAFRFVIHGLCKKKKVDIAIQVLEMMVSSQCKPN 458

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMK 341
              ++ +I+   A GM E A  L  K+  +K
Sbjct: 459 EEIYSAIIKGVGAAGMIEEANQLHQKLTELK 489


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 149/307 (48%), Gaps = 2/307 (0%)

Query: 32   YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
            Y AL+       L+D A    ++MK +  C PD +TY +++ +  K  R + + KI  EM
Sbjct: 769  YNALICGLVDEDLIDIAEELFSEMKRLG-CDPDEFTYHLILDAMGKSMRIEDMLKIQEEM 827

Query: 92   SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
               G + + VTYNTII G  K+K  +E  + +  ++ S G  P   T   ++      GN
Sbjct: 828  HNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLM-SEGFSPTPCTYGPLLDGLLKDGN 886

Query: 152  IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            IE  E  ++E    G + +    NIL   Y  AG  +K+  + + M ++   P + +Y +
Sbjct: 887  IEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTV 946

Query: 212  VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
            VI+T    G +     YFK++   G++P+ ITY  L+    K+G + +  S+   +E   
Sbjct: 947  VIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKG 1006

Query: 272  VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
            +  +   +N +I   G+AG   + G+++  +  +   P+  T+  +I+ Y+  G  E A 
Sbjct: 1007 IAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAF 1066

Query: 332  NLENKMI 338
                +MI
Sbjct: 1067 AAYGRMI 1073



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 147/328 (44%), Gaps = 2/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A  +++ M +DG+ P+V  Y+ L+ A+G+    +     + +M++    +P+VY+Y+I
Sbjct: 188 REAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEA-RGVRPNVYSYTI 246

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            I+   +  R +   +IL +M   G +   VT   +I     A +  + +  F  M  S 
Sbjct: 247 CIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASD 306

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T  +++   G+SG+   + + +N     G   ++ +      +  + G  D+ 
Sbjct: 307 Q-KPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEA 365

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V D M+++   P   +YN +I  F KA    +  E F  M   G  PN  T+   ++ 
Sbjct: 366 LDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINY 425

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + K+G  +K       +++  ++ D    N ++    + G +     +F  +K     PD
Sbjct: 426 HGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPD 485

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
           NIT+  MI+  +     + A  +  +MI
Sbjct: 486 NITYTMMIKCCSKASNADEAMKIFAEMI 513



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 157/369 (42%), Gaps = 36/369 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M+  GK +  E    L   M + G++P+V  YT  +   GQ+G L+EA+  +  M+    
Sbjct: 213 MLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEE-EG 271

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG--------- 111
           CKPDV T ++LI+      R    + +  +M     +   VTY T++D  G         
Sbjct: 272 CKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVS 331

Query: 112 ------KAKKFEEMESSFSAMVES-------------------GGCHPDIFTLNSMISAY 146
                 KA  + +   S++A V++                    G  P  ++ NS+IS +
Sbjct: 332 EIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGF 391

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +    +  + +N  N+ G   +  T  +    +G++G   K     + M+ +   P V
Sbjct: 392 LKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDV 451

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           V  N V+    K G +   +  F ++K  G+ P++ITY  ++   SKA    +   I  +
Sbjct: 452 VAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAE 511

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG- 325
           +  +    D    N +I    +AG   +  ++F  +KE +  P + T+ T++      G 
Sbjct: 512 MIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGK 571

Query: 326 MTEAAQNLE 334
           + E  Q LE
Sbjct: 572 VKEVMQLLE 580



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 148/321 (46%), Gaps = 5/321 (1%)

Query: 1   MVMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           + +L KC         S ++  + +DG   +V  YTA V A  Q G +DEA    ++MK 
Sbjct: 315 ITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQ 374

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
                P  Y+Y+ LI    K  RF+   ++   M+  G   +  T+   I+ +GK+ +  
Sbjct: 375 -KGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESL 433

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +    +  M +S G  PD+   N+++     +G +   ++ ++E   MG+  D  T  ++
Sbjct: 434 KALKRYELM-KSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMM 492

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            K   +A   D+   +   M +    P V+  N +I+   KAG   +  + F ++K   +
Sbjct: 493 IKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNL 552

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +P   TY +L++   + G + +V  +L  + ++    +   +N ++    + G+V    +
Sbjct: 553 EPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALD 612

Query: 298 LFLTMKERHCVPDNITFATMI 318
           +  +M    C+PD  ++ T++
Sbjct: 613 MLYSMTMNGCMPDLSSYNTVM 633



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 113/278 (40%), Gaps = 35/278 (12%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            +GK  + E    + E M + G K +   Y  ++S   +S +LDEA +    + S     P
Sbjct: 811  MGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMS-EGFSP 869

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
               TY  L+    K    +  E +  EM   G E +   YN +++GY  A   E++   F
Sbjct: 870  TPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELF 929

Query: 124  SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
             +MVE G                                  G  PD+ T N +I   G S
Sbjct: 930  ESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKS 989

Query: 150  GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
            G +E+    YN+    G+  ++ T N L    G+AG   +   + + +  + + P V TY
Sbjct: 990  GRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTY 1049

Query: 210  NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            N +I  +  +G  E     + +M   G +PNS TY  L
Sbjct: 1050 NALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 1087



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 158/378 (41%), Gaps = 43/378 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  M   G  P+   +   ++ +G+SG   +A      MKS     PDV   + +
Sbjct: 399 RALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKS-KGIVPDVVAGNAV 457

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    K  R  + +++  E+  +GI    +TY  +I    KA   +E    F+ M+E+  
Sbjct: 458 LYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENR- 516

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C PD+  +NS+I     +G   +  K + E   M ++    T N L    GR G   ++ 
Sbjct: 517 CAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVM 576

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE---------------------------- 223
            +++ M    F P ++TYN V++   K G +                             
Sbjct: 577 QLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGL 636

Query: 224 ----KMEEYFK---KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ-VENSDVILD 275
               +++E F    +MK + + P+  T C+++ ++ ++GL+ +    +R+ +   D  +D
Sbjct: 637 VKEGRLDEAFWMFCQMK-KVLAPDYATVCTILPSFVRSGLMKEALHTVREYILQPDSKVD 695

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY----NALGMTEAAQ 331
               + ++    +    EK  E    +     + D++  + +I+ +     AL   E  +
Sbjct: 696 RSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEALAAHELVK 755

Query: 332 NLENKMIAMKENSGKKLI 349
             EN  +++K  S   LI
Sbjct: 756 KFENLGVSLKTGSYNALI 773



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 112/257 (43%), Gaps = 8/257 (3%)

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
           FDL+++ +       I+ +  T+ T+    G          +   M E+G    + +T N
Sbjct: 124 FDLMQRQI-------IKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVL-NAYTYN 175

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I     SG   +    Y      GV   ++T ++L  ++G+    + +  ++  M+ R
Sbjct: 176 GLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEAR 235

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P V +Y I I   G+AG +E+     +KM+  G KP+ +T   L+     AG +   
Sbjct: 236 GVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADA 295

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +  +++ SD   D   +  ++   G +GD   + E++  +K      + +++   + A
Sbjct: 296 KDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDA 355

Query: 321 YNALGMTEAAQNLENKM 337
              +G  + A ++ ++M
Sbjct: 356 LCQVGRVDEALDVFDEM 372



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 145/345 (42%), Gaps = 45/345 (13%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  +G  P +  Y  ++    + G LDEAF     MK V    PD  T   ++ S   F 
Sbjct: 617 MTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKKV--LAPDYATVCTILPS---FV 671

Query: 80  RFDLIEKILAEM-SYLGIECSAV---TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           R  L+++ L  +  Y+    S V   + +++++G  K +   E    F+  + S G   D
Sbjct: 672 RSGLMKEALHTVREYILQPDSKVDRSSVHSLMEGILK-RDGTEKSIEFAENIASSGLLLD 730

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
              L+ +I  +          +   +F  +GV     + N L        + D    +  
Sbjct: 731 DLFLSPIIRHFCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFS 790

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M++    P   TY+++++  GK+  IE M +  ++M ++G K   +TY +++S   K+ 
Sbjct: 791 EMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSK 850

Query: 256 LIMK-----------------------VDSILR--QVENSDVILD----------TPFFN 280
           ++ +                       +D +L+   +E+++ + D             +N
Sbjct: 851 MLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYN 910

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            +++ Y  AGD EK+ ELF +M E+   PD  ++  +I    A G
Sbjct: 911 ILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADG 955



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 84/205 (40%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           ++ T  ++  A G  G +             G+  +  T N L     ++G   +   V 
Sbjct: 135 NVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFLVKSGFDREAMDVY 194

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             M      PTV TY++++  FGK    E +     +M+ RG++PN  +Y   +    +A
Sbjct: 195 KAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQA 254

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G + +   ILR++E      D      +I     AG +    ++F  MK     PD +T+
Sbjct: 255 GRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTY 314

Query: 315 ATMIQAYNALGMTEAAQNLENKMIA 339
            T++      G + +   + N + A
Sbjct: 315 ITLLDKCGDSGDSRSVSEIWNALKA 339



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 9/201 (4%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
           ++ A+G  G++ ++      F+LM    +KA++ T   +  + G  G        +  M+
Sbjct: 110 LMRAHGRVGDVAQV------FDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMK 163

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +        TYN +I    K+G   +  + +K M   G+ P   TY  L+ A+ K     
Sbjct: 164 EAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAE 223

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
            V  +L ++E   V  +   +   I   GQAG +E+   +   M+E  C PD +T   +I
Sbjct: 224 TVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLI 283

Query: 319 QAYNALGMTEAAQNLENKMIA 339
           Q     G    A+++  KM A
Sbjct: 284 QILCDAGRLADAKDVFWKMKA 304



 Score = 45.8 bits (107), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            ++ LGK  +  +A  ++E +L+ G KP+V  Y AL+  Y  SG  + AF+    M  V  
Sbjct: 1018 ILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRM-IVGG 1076

Query: 61   CKPDVYTY 68
            C+P+  TY
Sbjct: 1077 CRPNSSTY 1084


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 158/335 (47%), Gaps = 9/335 (2%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C+  E  QA  L E M +  +  +  +Y  +++   + G   EA   ++ M + S
Sbjct: 10  IVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTS 69

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAK-K 115
            C PD+YTY+ILI +  K  R +  + ++  M         VTYNT+I G    G  + +
Sbjct: 70  -CAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFR 128

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
            E     F  MV+ G   P   T   +I A       E+ +K  +  +  G   D+ T N
Sbjct: 129 VERAFRLFEEMVDKGHT-PTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYN 187

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
           +L   + +AGM DK   +   M  R   P VVTYN V++ F KAG +E+  + F +MK R
Sbjct: 188 MLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKAR 247

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G+ PN  TY S+  A  KAG +    + L ++    ++ D   +  +IS   + G  +  
Sbjct: 248 GIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLV-DAISYVALISTICKLGKGKLG 306

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +L   M E+   P+ +TF  + +A +    T+ A
Sbjct: 307 FQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDA 341



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 115/247 (46%), Gaps = 5/247 (2%)

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
           + +A TY+TI+ GY +  +  +  +    M ++     +    N +++     G  ++  
Sbjct: 1   QANAFTYSTIVRGYCEDGETRQALALLEHM-KNAEVPANAKLYNIILTHLCKHGKEKEAL 59

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
              +         DI T NIL  +  + G  +  + +++ MQ R     +VTYN +I   
Sbjct: 60  DLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGL 119

Query: 217 GKAGH----IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
            + G+    +E+    F++M  +G  P S+TY  ++ A  +  +  +   +L  +  +  
Sbjct: 120 CRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGC 179

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
             D   +N +I+ + +AG ++K  +LF+ M  R C+PD +T+ +++  +   G  E A  
Sbjct: 180 AFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANK 239

Query: 333 LENKMIA 339
           L  +M A
Sbjct: 240 LFAEMKA 246


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 147/323 (45%), Gaps = 7/323 (2%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSDGLK---PSVDVYTALVSAYGQSGLLDEAFSTINDM 55
           +++ G C  K+ E+A  L  +M  D  +   P+V  Y+ +++ +   G +D+ ++   +M
Sbjct: 166 ILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEM 225

Query: 56  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
                  PDV TY+ +I    K   FD  E +  +M   G + +  TYN +I GY    K
Sbjct: 226 ID-RGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGK 284

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           ++E+      M  + G  PD +T  S+++    +G   +   +++     G+K  + T  
Sbjct: 285 WKEVVQMLEEM-SARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYG 343

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
           IL   Y   G   +M S +D M +    P    +NI    + K G I+K  + F KM+  
Sbjct: 344 ILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQH 403

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G+ PN + Y +L+ A  K G +   +    Q+ N  V  +   FN ++         E+ 
Sbjct: 404 GLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERA 463

Query: 296 GELFLTMKERHCVPDNITFATMI 318
            EL   M ++   P+ + F T+I
Sbjct: 464 EELVYEMLDQGICPNAVFFNTLI 486



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 149/332 (44%), Gaps = 2/332 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q ++   LF  M+  G+ P V  YT ++    ++ L D A      M   +  KP+ YTY
Sbjct: 214 QVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMID-NGFKPNNYTY 272

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + LI       ++  + ++L EMS  G++    TY ++++   K  +  E    F +M+ 
Sbjct: 273 NCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIR 332

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G   P + T   +I  Y   G + +M  + +     G+  D    NI   +Y + GM D
Sbjct: 333 KG-IKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMID 391

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K   + + M++    P VV Y  +I+   K G ++  E  F +M + G+ PN + + SLV
Sbjct: 392 KAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLV 451

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                     + + ++ ++ +  +  +  FFN +I      G V +   L   M+     
Sbjct: 452 YGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVR 511

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           PD  ++  +I  Y   G T+ A+ + + M+++
Sbjct: 512 PDAFSYTPLISGYCLTGRTDEAEKVFDGMVSI 543



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 142/339 (41%), Gaps = 4/339 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK    ++A  +F+ M+ +G KP+   Y  L+  Y   G   E    + +M S  
Sbjct: 240 VIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEM-SAR 298

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KPD YTY  L+    K  R          M   GI+    TY  +I GY       EM
Sbjct: 299 GLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEM 358

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            S    MVE+G   PD    N   SAY   G I+K    +N+    G+  ++     L  
Sbjct: 359 HSFLDLMVENG-LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALID 417

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +  + G  D      + M      P +V +N ++         E+ EE   +M  +G+ P
Sbjct: 418 ALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICP 477

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N++ + +L+      G +M+   ++  +E+  V  D   +  +IS Y   G  ++  ++F
Sbjct: 478 NAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVF 537

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M      P  +T+ T++  Y +    + A  L  +M+
Sbjct: 538 DGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREML 576



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 147/340 (43%), Gaps = 2/340 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  L   ML  G+ P+   +  L+      G + E    I+ M+ V   +PD ++Y+ 
Sbjct: 461 ERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVG-VRPDAFSYTP 519

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI       R D  EK+   M  +G+  + VTYNT++ GY  A + ++    F  M+  G
Sbjct: 520 LISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKG 579

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P + T N+++     +    + ++ Y      G K DI T NI+     ++   D+ 
Sbjct: 580 -VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEA 638

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   +  +     ++T+ I+I    K G  E   + F  +   G+ PN +TY  +   
Sbjct: 639 FKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAEN 698

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G + + DS+   +E +    ++   N ++      GD+ + G     + ER+   +
Sbjct: 699 LIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVE 758

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 350
             T + ++  + +      A++L  K   + E +   LI+
Sbjct: 759 ASTTSLLMSIFTSDEYQHHAKSLPEKYHFLNEANSSALIK 798



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 135/333 (40%), Gaps = 35/333 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
             ++M+ +GL P   ++    SAY + G++D+A    N M+      P+V  Y  LI + 
Sbjct: 361 FLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQ-HGLSPNVVNYGALIDAL 419

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC--- 132
            K  R D  E    +M   G+  + V +N+++ G     K+E  E     M++ G C   
Sbjct: 420 CKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNA 479

Query: 133 -------------------------------HPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
                                           PD F+   +IS Y  +G  ++ EK ++ 
Sbjct: 480 VFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDG 539

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              +G+     T N L   Y  A   D    +   M ++   P VVTYN ++    +   
Sbjct: 540 MVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKR 599

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
             + +E +  M + G K +  TY  +++   K+  + +   + + + +  + L+   F  
Sbjct: 600 FSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTI 659

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           +I A  + G  E   +LF  +     VP+ +T+
Sbjct: 660 MIGALLKGGRKEDAMDLFAAIPANGLVPNVVTY 692



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 136/336 (40%), Gaps = 43/336 (12%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQ---SGLLDEAFSTINDM-KSVSD-CKPDV 65
           + A  LF+ +L      SV  +  L++A  +   S   + A S  N M +  SD   P++
Sbjct: 31  DDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPNL 90

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYL---GIECSAVTYNTIIDGYGKAKKFEEMESS 122
            TYSILI    +F R   +E   A    +   G     +  N ++ G    K+  E    
Sbjct: 91  CTYSILIG---RFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDV 147

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
               +   GC PD  +   ++    N    E+                ++ L+++   +G
Sbjct: 148 LLQRMPELGCMPDTVSYTILLKGLCNEKRAEEA---------------LELLHMMADDHG 192

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R                    P VV+Y+IVI  F   G ++K    F +M  RG+ P+ +
Sbjct: 193 RRCP-----------------PNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVV 235

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +++    KA L  + + + +Q+ ++    +   +NC+I  Y   G  +++ ++   M
Sbjct: 236 TYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEM 295

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             R   PD  T+ +++      G    A+   + MI
Sbjct: 296 SARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMI 331


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 174/372 (46%), Gaps = 37/372 (9%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK +Q + A  + ++M S G++ +V  ++ALV  Y ++GL  EA    N M+    C 
Sbjct: 187 LAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYG-CT 245

Query: 63  PDVYTYSILIKS-CTKF-------------HRF--DLI------------------EKIL 88
           PD+  +SI+I S C K              HRF  D++                  E++ 
Sbjct: 246 PDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVF 305

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           ++M   GI+ +  TY+ +ID   +  +       FS M+++G C P+  T NS++  +  
Sbjct: 306 SDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAG-CDPNAVTFNSLMRVHVK 364

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +G  EK+ K YN+   +G  AD  + N + +S+ R    ++   +++ M K+   P   T
Sbjct: 365 AGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNAST 424

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           +N +     K   +      + +MK    +PN++TY  L+  ++++     V  + ++++
Sbjct: 425 FNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMD 484

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT-FATMIQAYNALGMT 327
            S V  +   +  +IS +          +L + M E  C+  N++ + T+++     G  
Sbjct: 485 ESQVEPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQL 544

Query: 328 EAAQNLENKMIA 339
           +  + L +KM+A
Sbjct: 545 KKHEELVDKMVA 556



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 3/234 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +C Q  +A  +F  M+  G  P+   + +L+  + ++G  ++     N MK +  C  
Sbjct: 327 LCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLG-CPA 385

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  +Y+ +I+S  +    +   KIL  M   G+  +A T+N I     K          +
Sbjct: 386 DTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMY 445

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M E   C P+  T N ++  +  S + + + K   E +   V+ ++ T  IL   +  
Sbjct: 446 ARMKELN-CQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILISMFCD 504

Query: 184 AGMYDKM-RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
              ++   + +M+ ++++   P +  Y  V+E   KAG ++K EE   KM  RG
Sbjct: 505 MKHWNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKMVARG 558



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 7/179 (3%)

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
           +L G  A  +  N +    G+   +D    V+D M+ R    TV T++ ++  + +AG  
Sbjct: 170 SLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSALVRRYVRAGLA 229

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI---LRQVENSDVILDTPFF 279
            +    F +M+  G  P+ + +  ++S+  K     +  S    L+     DV++    +
Sbjct: 230 AEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFEPDVVV----Y 285

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             ++  + +AGD+ K  E+F  MK     P+  T++ +I +    G    A ++ ++MI
Sbjct: 286 TSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEMI 344


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 159/332 (47%), Gaps = 2/332 (0%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C + + A  LF  ML     PS+  +T +++A  +    D      + M+++     D+Y
Sbjct: 593 CIKFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLG-ISHDLY 651

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +++ILI    +  RF L   +L +M  LG + S VT  ++++G+ +  +F+E  S   +M
Sbjct: 652 SFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSM 711

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E G   P++   N++I+    + ++    + +      G+ AD  T N L      +G 
Sbjct: 712 AELG-LEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGR 770

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           +     ++  M KR   P V+ +  +I+TF K G++ + +  +K+M  R + PN +TY S
Sbjct: 771 WTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNS 830

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++ +   G +     +   + +     D   +N +I+ + ++  VE   +LF  M  + 
Sbjct: 831 LINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQG 890

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            V D  T+ T+I  Y   G    AQ + N+M+
Sbjct: 891 LVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV 922



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 159/332 (47%), Gaps = 7/332 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA--FSTINDMKSVSDCKPDVYTY 68
           E A  LF  M+     PSV  +T L++A       +    FS   ++  +S    D+Y++
Sbjct: 47  EDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISH---DLYSF 103

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +ILI    +  R  L   IL +M  LG + S VT+ +++ G+    +  +  S  ++MV+
Sbjct: 104 TILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVK 163

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMY 187
           SG   P++   N++I     +G++    +  NE    G + AD+ T N L      +G +
Sbjct: 164 SGY-EPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEW 222

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            +   ++  M KR   P V T+  +I+ F K G++++ +E +K+M    + PN++TY SL
Sbjct: 223 RQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSL 282

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++     G +         + +     +   +N +I+ + ++  VE   +LF  M     
Sbjct: 283 INGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGL 342

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           V D  T+ T+I  Y  +G    A+++ + M++
Sbjct: 343 VGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVS 374



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 142/315 (45%), Gaps = 2/315 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C +   A  L   M+  G +PS+    +L++ + Q     EA S ++ M  +   +P+V
Sbjct: 662 RCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELG-LEPNV 720

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             Y+ +I    K    +   +I   M   GI   AVTYNT+I G   + ++ +       
Sbjct: 721 VIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRD 780

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           MV+     P++    ++I  +   GN+ + +  Y E     V  +I T N L   +   G
Sbjct: 781 MVKRK-IDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQG 839

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
                + + D M  +  FP VVTYN +I  F K+  +E   + F +M H+G+  ++ TY 
Sbjct: 840 RLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYN 899

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L+  Y +AG +     +  ++ +  V  D   +N ++      G +EK   +   +++ 
Sbjct: 900 TLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKN 959

Query: 306 HCVPDNITFATMIQA 320
               D IT+  +IQ 
Sbjct: 960 QMDVDIITYNIIIQG 974



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 149/368 (40%), Gaps = 38/368 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C +   A  +   M+  G  PS+  + +L+  +     + +AFS +  M   S  +P+V
Sbjct: 112 RCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVK-SGYEPNV 170

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             Y+ LI    K    ++  ++L EM   G +    VTYNT++ G   + ++ +      
Sbjct: 171 VVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILR 230

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +    +PD+FT  ++I A+   GN+++ ++ Y +     +  +  T N L       
Sbjct: 231 DMTKRR-INPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMH 289

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G     +   D M  +  FP VVTYN +I  F K+  +E   + F++M   G+  ++ TY
Sbjct: 290 GRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTY 349

Query: 245 CSLVSAYSKAGLIMKVDSILRQVEN----SDVI--------------------------- 273
            +L+  Y + G +     I   + +     D+I                           
Sbjct: 350 NTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRS 409

Query: 274 ----LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
               L    +N +I    +A  VE+  ELF  +      PD  T+  MI      G    
Sbjct: 410 GEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRRE 469

Query: 330 AQNLENKM 337
           A  L  +M
Sbjct: 470 ADELFRRM 477



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 123/274 (44%), Gaps = 4/274 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C   E  QA+ +   M    + P V  +TAL+ A+ + G LDEA      M   S
Sbjct: 212 LLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQ-S 270

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P+  TY+ LI       R    +K    M+  G   + VTYNT+I+G+ K+++ E+ 
Sbjct: 271 SIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDG 330

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  M   G    D FT N++I  Y   G +   +  ++     GV  DI T  IL  
Sbjct: 331 MKLFQRMYREG-LVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLH 389

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                G         + M+    +  +V YNI+I    KA  +E+  E F ++   G+KP
Sbjct: 390 GLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKP 449

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
           ++ TY  ++    K G   + D + R+++   +I
Sbjct: 450 DARTYTIMILGLCKNGPRREADELFRRMKEDGII 483



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 142/326 (43%), Gaps = 5/326 (1%)

Query: 2    VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
            V+ G CK  +   A  +F  M   G+      Y  L+S    SG   +A   + DM    
Sbjct: 726  VINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVK-R 784

Query: 60   DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
               P+V  ++ LI +  K       + +  EM    +  + +TYN++I+G+    +  + 
Sbjct: 785  KIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDA 844

Query: 120  ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            +  F  MV S GC PD+ T N++I+ +  S  +E   K + E    G+  D  T N L  
Sbjct: 845  KHMFDLMV-SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIH 903

Query: 180  SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
             Y +AG  +  + V + M      P +VTYNI+++     G IEK     + ++   M  
Sbjct: 904  GYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDV 963

Query: 240  NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
            + ITY  ++    +   + +   + R +    V LD   +  +IS   + G   +  +L 
Sbjct: 964  DIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLC 1023

Query: 300  LTMKERHCVP-DNITFATMIQAYNAL 324
              MKE   +P + I   T+   Y +L
Sbjct: 1024 TRMKEDGFMPSERIYDETLRDHYTSL 1049



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 1/241 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S V +  ++    K  KF+ +   F  M E+ G   D+++   +I  +            
Sbjct: 614 SIVDFTRVLTAIAKMNKFDIVIYLFHKM-ENLGISHDLYSFTILIHCFCRCSRFSLALAL 672

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             +   +G +  I TL  L   + +   + +  S++D M +    P VV YN VI    K
Sbjct: 673 LGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCK 732

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
              +    E F  M+ +G+  +++TY +L+S    +G       +LR +    +  +  F
Sbjct: 733 NRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIF 792

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  +I  + + G++ +   L+  M  R   P+ +T+ ++I  +   G    A+++ + M+
Sbjct: 793 FTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMV 852

Query: 339 A 339
           +
Sbjct: 853 S 853



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 36/227 (15%)

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           KF++    F  M++S    P I     +++A       + +   +++   +G+  D+ + 
Sbjct: 595 KFDDAFGLFCEMLQSRPI-PSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSF 653

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
            IL   + R   +    +++  M K  F P++VT   ++  F +    ++       M  
Sbjct: 654 TILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAE 713

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G++PN + Y                                   N +I+   +  D+  
Sbjct: 714 LGLEPNVVIY-----------------------------------NTVINGLCKNRDLNN 738

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
             E+F  M+++  V D +T+ T+I      G    A  L   M+  K
Sbjct: 739 ALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRK 785


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 145/326 (44%), Gaps = 8/326 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M  DG+ P+   Y AL++   ++  +  AF  +N M   + C P++ TY+ +IK  
Sbjct: 377 LFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR-NGCSPNIVTYNEMIKGY 435

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                      ++  M   G   + VTYNTII GY  +            M   GGC PD
Sbjct: 436 CILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM-RDGGCKPD 494

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
            ++   +I  +     I KME  +  FN M   G+  +  T   L   Y +    D   S
Sbjct: 495 EWSYTELICGFCK---ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +++ M++    P V TYN++I    K  +    EE  K M   G+ PN +TY +++    
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLC 611

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           K G       +  ++     + +   ++ +I A GQ G VE+   LF  ++    +PD I
Sbjct: 612 KNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEI 671

Query: 313 TFATMIQAYNALGMTEAAQNLENKMI 338
           T+  MI+AY   G  E A N   +MI
Sbjct: 672 TYVKMIEAYIMSGKVEHAFNFLGRMI 697



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 147/325 (45%), Gaps = 22/325 (6%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + E A  LF  M+ DGL P+   YTAL+  Y +   LD A S +  MK  S
Sbjct: 501 LICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKR-S 559

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C+P+V TY++LI   TK + F   E++   M   GI  + VTY  +IDG  K       
Sbjct: 560 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F+ M+E  GC P++ T +S+I A G  G +E+ E  + E    G+  D  T   + +
Sbjct: 620 LEMFNKMIEQ-GCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIE 678

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +Y  +G  +   + +  M K    PT+ TY ++I+            EY    +     P
Sbjct: 679 AYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN--------EYLLADQRLAALP 730

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +  CS     +    +  + + L ++   D  L     N ++S    AG   +  EL 
Sbjct: 731 DVVPNCSFGYQTTDQDAVSVMSAKLAEL---DPGLSVQVQNALVSNLSTAGRWFEANELL 787

Query: 300 LTMKERHCVPDNITFATMIQAYNAL 324
            +M  +   PD        +AYN+L
Sbjct: 788 GSMISQGLCPDQ-------EAYNSL 805



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 153/373 (41%), Gaps = 37/373 (9%)

Query: 2   VMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN------ 53
           ++LG C++ +  S L  F  M  +G +P+   Y+ L++    SG ++EAF  I       
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315

Query: 54  ----------------DMKSVSD------------CKPDVYTYSILIKSCTKFHRFDLIE 85
                           DM    D            C+P+VYTY+ LI          +  
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI 375

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +   MS  G+  + VTYN +I+   + ++ +      + M  +G C P+I T N MI  
Sbjct: 376 GLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNG-CSPNIVTYNEMIKG 434

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           Y   G+ +K     N     G  A++ T N + K Y  +G       ++D M+     P 
Sbjct: 435 YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
             +Y  +I  F K   +E     F +M   G+ PN +TY +L+  Y K   +    S+L 
Sbjct: 495 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 554

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            ++ S    +   +N +I    +  +     EL   M E    P+ +T+  MI      G
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614

Query: 326 MTEAAQNLENKMI 338
            T  A  + NKMI
Sbjct: 615 STSLALEMFNKMI 627



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 152/330 (46%), Gaps = 18/330 (5%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV--SDCKPDVYTYSILIKS 74
           +  MLS+G++P++ +Y A+++A  + G + +A  TI  MK V  S+  PD +TY+ +I  
Sbjct: 203 YHRMLSEGVQPNLLIYNAVINALCKDGNVADA-ETI--MKKVFESEMSPDTFTYTSMILG 259

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             + H  D   ++  +M+  G E + VTY+T+I+G   + +  E       M+   G  P
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILH-GILP 318

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
              T    I A  + G  E   + + +    G + ++ T   L      +G+      + 
Sbjct: 319 TAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLF 378

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY--- 251
             M +   FP  VTYN +I    +   I+        M   G  PN +TY  ++  Y   
Sbjct: 379 HRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCIL 438

Query: 252 ---SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               KA L+M  +++L++  +++++     +N II  Y  +G+      +   M++  C 
Sbjct: 439 GDPKKAMLVM--NNMLQRGHSANLVT----YNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMI 338
           PD  ++  +I  +  +   E+A  L N+M+
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMV 522



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 139/323 (43%), Gaps = 2/323 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  LF  M + G +P+V  YTAL+S    SGLL  A    + M S     P+  TY+ 
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVFPNTVTYNA 395

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  R      +L  M   G   + VTYN +I GY      ++     + M++ G
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
               ++ T N++I  Y +SGN     +  +     G K D  +   L   + +    +  
Sbjct: 456 H-SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESA 514

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + + M      P  VTY  +I+ + K   ++      + MK  G +PN  TY  L+  
Sbjct: 515 FGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHG 574

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            +K       + + + +    +  +   +  +I    + G      E+F  M E+ C+P+
Sbjct: 575 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
            +T++++I+A    G  E A+NL
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENL 657



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 9/289 (3%)

Query: 54  DMKSVSDCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDG 109
           DM S S  +  ++ YS L+   ++        D   ++L+E    G++ + + YN +I+ 
Sbjct: 169 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE----GVQPNLLIYNAVINA 224

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
             K     + E+    + ES    PD FT  SMI  +    +++   + +N+    G + 
Sbjct: 225 LCKDGNVADAETIMKKVFESE-MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEP 283

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           +  T + L      +G  ++   ++  M      PT  T    I      G  E     F
Sbjct: 284 NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLF 343

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
             MK++G +PN  TY +L+S    +GL+     +  ++    V  +T  +N +I+   + 
Sbjct: 344 VDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVEN 403

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             ++    +   M    C P+ +T+  MI+ Y  LG  + A  + N M+
Sbjct: 404 RRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/288 (21%), Positives = 115/288 (39%), Gaps = 33/288 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  + E+A  LF  +   GL P    Y  ++ AY  SG ++ AF+ +  M   + C+P
Sbjct: 645 LGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK-AGCQP 703

Query: 64  DVYTYSILIK---------------------SCTKFHRF---DLIEKILAEMSYLGIECS 99
            ++TY +LIK                     +C+  ++    D +  + A+++ L    S
Sbjct: 704 TLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLS 763

Query: 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
               N ++     A ++ E      +M+  G C PD    NS++ +     N++     +
Sbjct: 764 VQVQNALVSNLSTAGRWFEANELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVF 822

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
              +  G +  +     L  +  +     + R   + M  R + P  V   ++I+   + 
Sbjct: 823 KHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRD 882

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK-------AGLIMKV 260
           G+ +   E+   M+ R   P+   Y  L    SK       AG I KV
Sbjct: 883 GYKDLCMEFLHIMETRRYMPSFHIYTILAREASKKRSWKHVAGCITKV 930



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 82/165 (49%), Gaps = 1/165 (0%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           ++++   + +  M   M S +D + +      +  Y+ ++    + G    + + + +M 
Sbjct: 149 IHLIKSCHSKEAMARTM-SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 207

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G++PN + Y ++++A  K G +   ++I+++V  S++  DT  +  +I  + +  D++
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              ++F  M +  C P+ +T++T+I      G    A +L  +MI
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 90/216 (41%)

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           SF  M+   G    +F  ++++      G    +   Y+     GV+ ++   N +  + 
Sbjct: 166 SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINAL 225

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G      ++M  + +    P   TY  +I    +   ++   + F +M   G +PN+
Sbjct: 226 CKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNT 285

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L++    +G + +   ++R++    ++         I A    G  E    LF+ 
Sbjct: 286 VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVD 345

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           MK + C P+  T+  +I      G+ + A  L ++M
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM 381


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 151/332 (45%), Gaps = 10/332 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K+ EQA +    M+S G  P V  YTA++ A      L EA   + +M +  +  P
Sbjct: 21  LCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMAN-RNLTP 79

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TY++LI    K  R D    +L++M    +  +AVTYN++I G  KA++  E     
Sbjct: 80  NVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVP-TAVTYNSLISGLCKAERASEAYDLL 138

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV S GC PDIFT  ++I+ +  S   +   + + +    G + D+ T + L     +
Sbjct: 139 EEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCK 197

Query: 184 AGMYDKMRSVMDFMQKRF----FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            G   +++  +D   +        P  VTYN +I  F + G +++     ++M   G  P
Sbjct: 198 EG---RLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 254

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +TY +L++ + K   +     +L Q+    +  D   F  ++    +   +     + 
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHIL 314

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
             M+ + C P   T+ T++  Y      E A+
Sbjct: 315 GEMRRKSCSPTVYTYNTILDGYCRANQLEEAR 346



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 142/323 (43%), Gaps = 6/323 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A    E M +  L P+V  YT L+    + G +DEA + ++ M+    C P   TY+ L
Sbjct: 64  EARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK--KCVPTAVTYNSL 121

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K  R      +L EM Y G      TY T+I G+ K+KK ++    F  +V  G 
Sbjct: 122 ISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKM 190
             PD+ T + +I      G +++    +      G    +  T N L   + R G  D+ 
Sbjct: 182 -RPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 240

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            ++++ M +    P VVTY  ++  F K   ++   +   +M  +G+ P+ +T+ SL+  
Sbjct: 241 MNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDG 300

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +   +     IL ++           +N I+  Y +A  +E+  +  L  +E  C P+
Sbjct: 301 LCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFML--EEMDCPPN 358

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
            ++F  MI+    +  +  A  L
Sbjct: 359 VVSFNIMIRGLCKVNRSSEAMEL 381



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 143/334 (42%), Gaps = 8/334 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K+ + A  +FE +++ G +P V  Y+ L+    + G L EA      M     C P+ 
Sbjct: 162 KSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNT 221

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ LI    +  + D    +L  M+  G     VTY T+++G+ K  + ++     + 
Sbjct: 222 VTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQ 281

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M    G  PD+ T  S++        +        E         + T N +   Y RA 
Sbjct: 282 MTRK-GLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRAN 340

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             ++ R  M  +++    P VV++NI+I    K     +  E  ++ + R   P+ + Y 
Sbjct: 341 QLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYT 398

Query: 246 SLVSAYSKAGLIMKVDSILRQ-VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           +++    +   + +   + R+ +E    + ++  ++ +I+    AG +++         E
Sbjct: 399 TVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYI----E 454

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + CVP+  T+  +I A+      E A+ L + M+
Sbjct: 455 KGCVPNIGTYNLLIDAFRKANRDEDARELLDDMV 488



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 4/290 (1%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           YT+L+    +   L++A   +  M S     PDVYTY+ +I +    +R     K L EM
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVS-KGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
           +   +  + VTY  +IDG  K  + +E  +  S M +   C P   T NS+IS    +  
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTYNSLISGLCKAER 130

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
             +      E    G   DI T   L   + ++   D    V + +  R F P VVTY+ 
Sbjct: 131 ASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC 190

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           +I+   K G +++  + F +M   G   PN++TY SL+S + + G + +  ++L ++  +
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
               D   +  +++ + +   ++   +L   M  +   PD +TF +++  
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDG 300



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 38/259 (14%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L E M   G  P V  YT L++ + +   LD+A+  +N M +     PDV T++ 
Sbjct: 238 DEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQM-TRKGLTPDVVTFTS 296

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES--------- 121
           L+    + +R      IL EM       +  TYNTI+DGY +A + EE            
Sbjct: 297 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCP 356

Query: 122 ----SFSAMVES-------------------GGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
               SF+ M+                       C+PD+    ++I        +++  + 
Sbjct: 357 PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRV 416

Query: 159 YNE-FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
           Y +     G   +  T + L      AGM D+ R  ++    +   P + TYN++I+ F 
Sbjct: 417 YRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIE----KGCVPNIGTYNLLIDAFR 472

Query: 218 KAGHIEKMEEYFKKMKHRG 236
           KA   E   E    M  RG
Sbjct: 473 KANRDEDARELLDDMVQRG 491



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 39/243 (16%)

Query: 98  CSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
           CSA  VTY ++I G  K K+ E+       MV S G HPD++T  ++I A      + + 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMV-SKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            K+  E                                   M  R   P VVTY ++I+ 
Sbjct: 66  RKFLEE-----------------------------------MANRNLTPNVVTYTVLIDG 90

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K G +++      KM+ + + P ++TY SL+S   KA    +   +L ++  S  I D
Sbjct: 91  LCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPD 149

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +  +I+ + ++   +    +F  +  R   PD +T++ +I      G  + A +L  
Sbjct: 150 IFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFG 209

Query: 336 KMI 338
           +MI
Sbjct: 210 RMI 212



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 1/143 (0%)

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M  + F P V TY  VI        + +  ++ ++M +R + PN +TY  L+    K G 
Sbjct: 37  MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGR 96

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + +  ++L ++     +     +N +IS   +A    +  +L   M    C+PD  T+ T
Sbjct: 97  VDEAVALLSKMRKK-CVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTT 155

Query: 317 MIQAYNALGMTEAAQNLENKMIA 339
           +I  +     ++ A  +  +++A
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVA 178



 Score = 41.6 bits (96), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 49/127 (38%), Gaps = 4/127 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +  +A  L E        P V +YT ++    +   +DEA      M     C P
Sbjct: 369 LCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLP 428

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TYS LI         D     + +    G   +  TYN +ID + KA + E+     
Sbjct: 429 NSITYSTLITGLCNAGMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELL 484

Query: 124 SAMVESG 130
             MV+ G
Sbjct: 485 DDMVQRG 491


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 2/314 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P+   Y  +++ +   G +  A   + +M+      P+ YTY  +I    K  R D   
Sbjct: 516 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 575

Query: 86  KILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           K+  EM   G ++  AV YN +I GY    K +        MVE G     + T N ++ 
Sbjct: 576 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM-TVATYNLLVH 634

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A    G   +  +   E    G+  D+ T NIL   + + G   K   + + M +R    
Sbjct: 635 ALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 694

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           TVVTY  +I    K G +++ ++ F +   RG++P+ + Y +L++++S +G I +   I+
Sbjct: 695 TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIM 754

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++E   +  D   +N ++      G V++  +L   M ER   PD +T+ T+I  Y+  
Sbjct: 755 GEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMK 814

Query: 325 GMTEAAQNLENKMI 338
           G  + A  + N+M+
Sbjct: 815 GDVKDALRIRNEMM 828



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 159/344 (46%), Gaps = 15/344 (4%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V+ G CK  + ++A  +F+ ML+ G +KP   +Y AL+  Y   G LD A     D    
Sbjct: 561 VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL-LYRDRMVE 619

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
                 V TY++L+ +     R     +++ EM   G+     TYN +I+G+ K    ++
Sbjct: 620 RGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKK 679

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  M   G     + T  ++I A    G +++ +K ++E    G++ D+   N L 
Sbjct: 680 ALEIFENMSRRG-VRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI 738

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            S+  +G  D+   +M  M+K+   P  VTYN ++      G +++  +   +M  RG++
Sbjct: 739 NSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 798

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY---GQAGDVEKM 295
           P+ +TY +L+S YS  G +     I  ++ N         +N +I      GQ  D E M
Sbjct: 799 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 858

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +    M E    PD+ T+ ++I+       TE  + ++++ +A
Sbjct: 859 VK---EMVENGITPDDSTYISLIEGLT----TEDERAIDDERLA 895


>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
 gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
          Length = 668

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 142/284 (50%), Gaps = 10/284 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--KPDVYTY 68
           E  +L  E  L+  +KP    Y AL+  Y + G L  A   +++M   S C   PD  TY
Sbjct: 281 EAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEM---SQCGVAPDEATY 337

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S+L+ + T+  R++    +L EM   G++ S+  ++ I+ G+     +++  +    M +
Sbjct: 338 SLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREM-Q 396

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           + G  PD    N MI  +G    +      +N+    G++ D+ T N L  ++ + G +D
Sbjct: 397 ASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHD 456

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   + + M++    P   TYNI+I   G+  H E +E    +MK +G+ PN ITY +LV
Sbjct: 457 RAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLV 516

Query: 249 SAYSKAGLIMK-VDSILRQVENSDVILDTP-FFNCIISAYGQAG 290
             Y ++G   + +D I  +   +D +  +P  ++ +++AY Q G
Sbjct: 517 DVYGRSGRYKEAIDCI--EAMKADGLKPSPTMYHALVNAYAQRG 558



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 154/319 (48%), Gaps = 5/319 (1%)

Query: 2   VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           V +G  K  EQ   + + M   G+ P    Y+ LV AY ++G  + A   + +M++    
Sbjct: 310 VRIGSLKNAEQ---VLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEA-DGV 365

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           KP  Y +S ++        +     +L EM   G+      YN +ID +GK         
Sbjct: 366 KPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMD 425

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           +F+ M E G   PD+ T N++I A+   G  ++  + + E           T NI+    
Sbjct: 426 AFNKMREEG-IEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLL 484

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G    ++ + +++  M+++   P ++TY  +++ +G++G  ++  +  + MK  G+KP+ 
Sbjct: 485 GEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSP 544

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             Y +LV+AY++ GL     ++++ ++   + +     N +I+A+G+   V +   +   
Sbjct: 545 TMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQF 604

Query: 302 MKERHCVPDNITFATMIQA 320
           M+E    PD IT+ T+++A
Sbjct: 605 MRENGLRPDVITYTTLMKA 623



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 151/335 (45%), Gaps = 1/335 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            +   P+ A  L     + GL P  +  TAL+SA G +G + EA +   +     + KP 
Sbjct: 239 ARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPR 298

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+ L+K   +       E++L EMS  G+     TY+ ++D Y +A ++E       
Sbjct: 299 TRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLK 358

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+ G  P  +  + +++ + + G+ +K      E    GV+ D    N++  ++G+ 
Sbjct: 359 EM-EADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKY 417

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
                     + M++    P VVT+N +I+   K G  ++  E F++M+     P + TY
Sbjct: 418 NCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTY 477

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +++   +      V+++L +++   ++ +   +  ++  YG++G  ++  +    MK 
Sbjct: 478 NIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKA 537

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
               P    +  ++ AY   G+ + A N+   M A
Sbjct: 538 DGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKA 572



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 148/305 (48%), Gaps = 10/305 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M++ S  +PD + Y++
Sbjct: 351 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQA-SGVRPDRHFYNV 409

Query: 71  LIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +I +  K+    H  D   K+  E    GIE   VT+NT+ID + K  + +     F  M
Sbjct: 410 MIDTFGKYNCLGHAMDAFNKMREE----GIEPDVVTWNTLIDAHCKGGRHDRAAELFEEM 465

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            ES  C P   T N MI+  G   + E +E   +E    G+  +I T   L   YGR+G 
Sbjct: 466 RESN-CPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGR 524

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y +    ++ M+     P+   Y+ ++  + + G  +      K MK  G++ + +   S
Sbjct: 525 YKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNS 584

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++A+ +   +++  S+L+ +  + +  D   +  ++ A  +    +K+  ++  M    
Sbjct: 585 LINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSG 644

Query: 307 CVPDN 311
           C PD 
Sbjct: 645 CAPDR 649



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 140/323 (43%), Gaps = 43/323 (13%)

Query: 60  DCKPDVYTYSILIKSCTKFHRFD---LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           D  PD+ +YS L+ S           L+E++L ++    +E  A  ++ +I  + +A   
Sbjct: 185 DFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAA-L 243

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLN 175
            +      A  ++ G  P    + ++ISA G +G + + E  + EF L G +K   +  N
Sbjct: 244 PDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYN 303

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L K Y R G       V+D M +    P   TY+++++ + +AG  E      K+M+  
Sbjct: 304 ALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEAD 363

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ------- 288
           G+KP+S  +  +++ +   G   K  ++LR+++ S V  D  F+N +I  +G+       
Sbjct: 364 GVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHA 423

Query: 289 ----------------------------AGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
                                        G  ++  ELF  M+E +C P   T+  MI  
Sbjct: 424 MDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMI-- 481

Query: 321 YNALGMTEAAQNLENKMIAMKEN 343
            N LG  E  + +E  +  MKE 
Sbjct: 482 -NLLGEQEHWEGVEAMLSEMKEQ 503


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 154/357 (43%), Gaps = 27/357 (7%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   E A  LF  M   G  P +  Y +L+  +G+ GLLDE       MK  +DC PD
Sbjct: 67  CKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKD-ADCDPD 125

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ LI    KF R     + L EM   G++ + VTY+T ID + K    +E    F 
Sbjct: 126 VITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFV 185

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M       P+ FT  S+I A   +GN+ +  K   E    G+K ++ T   L       
Sbjct: 186 DM-RRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEE 244

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +   V   M      P   TY  ++  F KA  +E  ++  K+MK + +KP+ + Y
Sbjct: 245 GRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLY 304

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY---GQAGDV--------- 292
            +++        + +   ++ +++ S +  +   +  ++ AY   GQA +          
Sbjct: 305 GTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD 364

Query: 293 -----------EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
                      E   +LF  M ++  +PD I +  +I      G  + A NL ++MI
Sbjct: 365 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMI 421



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 161/353 (45%), Gaps = 26/353 (7%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           + P+    L E M ++GLKP+V  Y+  + A+ + G+L EA     DM+ V+   P+ +T
Sbjct: 141 RMPKAFEFLHE-MKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVA-LTPNEFT 198

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ LI +  K        K++ E+   GI+ + VTY  ++DG  +  + +E E  F AM+
Sbjct: 199 YTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAML 258

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            + G  P+  T  +++  +  +  +E  +    E     +K D+     +          
Sbjct: 259 -NAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRL 317

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-------IEKM--------------- 225
           ++ + ++  +++       V Y  +++ + K+G        +E+M               
Sbjct: 318 EEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEV 377

Query: 226 -EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
            ++ F +M  +GM P+ I Y +L+    K G + +  ++  ++    + LD   +  +I 
Sbjct: 378 AKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIW 437

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               +G V+K   L   M  +  +PD + +  +I+ Y ALG  + A  L+N+M
Sbjct: 438 GLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEM 490



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 130/278 (46%), Gaps = 7/278 (2%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P   + + L+   +K  R DL  K   +M   GI+ S  TYN +ID   K    E   S 
Sbjct: 19  PKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSL 78

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ M E+G   PDI T NS+I  +G  G +++    + +        D+ T N L   + 
Sbjct: 79  FTQMKEAG-FTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFC 137

Query: 183 RAGMYDKMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +   +++M    +F   M+     P VVTY+  I+ F K G +++  ++F  M+   + P
Sbjct: 138 K---FERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTP 194

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N  TY SL+ A  KAG + +   ++ ++  + + L+   +  ++    + G +++  E+F
Sbjct: 195 NEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVF 254

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             M      P+  T+  ++  +      E A+++  +M
Sbjct: 255 RAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 292



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 144/308 (46%), Gaps = 2/308 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+AS  F  M    + P      AL+    + G  D +     DM   +  K  V+TY+I
Sbjct: 3   EEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDM-GAAGIKRSVFTYNI 61

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    K    ++   +  +M   G     VTYN++IDG+GK    +E    F  M +  
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM-KDA 120

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C PD+ T N++I+ +     + K  ++ +E    G+K ++ T +    ++ + GM  + 
Sbjct: 121 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEA 180

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
                 M++    P   TY  +I+   KAG++ +  +  +++   G+K N +TY +L+  
Sbjct: 181 IKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDG 240

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G + + + + R + N+ V  +   +  ++  + +A ++E   ++   MKE+   PD
Sbjct: 241 LCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPD 300

Query: 311 NITFATMI 318
            + + T++
Sbjct: 301 LLLYGTIL 308



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 112/256 (43%), Gaps = 28/256 (10%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+ K+ E+   +F  ML+ G+ P+ + YTALV  + ++  ++ A   + +MK     KPD
Sbjct: 245 GRMKEAEE---VFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKC-IKPD 300

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK--------- 115
           +  Y  ++       R +  + ++ E+   GI  +AV Y T++D Y K+ +         
Sbjct: 301 LLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLE 360

Query: 116 --------------FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
                         FE  +  F  M++ G   PD     ++I      GN+++     + 
Sbjct: 361 EMLDLVDGLCKNNCFEVAKKLFDEMLDKG-MMPDKIAYTALIDGNMKHGNLQEALNLRDR 419

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              +G++ D+     L      +G   K R+++D M  +   P  V Y  +I+ +   G 
Sbjct: 420 MIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGK 479

Query: 222 IEKMEEYFKKMKHRGM 237
           +++  E   +M  RGM
Sbjct: 480 VDEALELQNEMAKRGM 495



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 60/125 (48%)

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M+K   FP   + N ++    K G  +   ++FK M   G+K +  TY  ++    K G 
Sbjct: 12  MRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGD 71

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           +    S+  Q++ +    D   +N +I  +G+ G +++   +F  MK+  C PD IT+  
Sbjct: 72  LEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNA 131

Query: 317 MIQAY 321
           +I  +
Sbjct: 132 LINCF 136


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 159/365 (43%), Gaps = 46/365 (12%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           EQA   F+ M + G++P ++ Y  L+SA   SG + EA +  + M     C PD+ TY++
Sbjct: 158 EQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT----CSPDIMTYNV 213

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  +    + ++ E+   G E +  TY+ II+ Y K  K EE    F  M+ES 
Sbjct: 214 LMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESN 273

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY--GRAGMYD 188
            C P+  T N++I+ +  +G +E   K + E   +G KA I T N L  S    R G+Y 
Sbjct: 274 -CVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYT 332

Query: 189 KM----------------------------RSVMDFMQKRFFF--------PTVVTYNIV 212
            +                            R + + MQ   +F        P V+TY+I+
Sbjct: 333 AVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQ---YFDEMEGKCAPNVITYSIL 389

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           I+   K   +++  +  + MK  G  P  +TY  L++ + K G +        +++ +  
Sbjct: 390 IDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGC 449

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
             +T  FN +I    +A        L   M    C PD IT+  +I    +    E AQ 
Sbjct: 450 APNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQR 509

Query: 333 LENKM 337
           L + M
Sbjct: 510 LFDGM 514



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 161/342 (47%), Gaps = 19/342 (5%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  Q  QA  +F  M S GL P+      L+    + G +  A     +M++ 
Sbjct: 37  VLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQA- 95

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV---TYNTIIDGY----G 111
               P   +++IL++    F     +   LA +  +    S+V   TYN ++ G      
Sbjct: 96  GPFLPTSASHNILLRG---FFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENK 152

Query: 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
            A + E+    F  M ++ G  PD+ + + ++SA  +SG   +M + +  F+ M    DI
Sbjct: 153 SANRLEQAMEFFKEM-KASGVEPDLESYHILLSALSDSG---RMAEAHALFSAMTCSPDI 208

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
            T N+L   Y + G   + +S+M  + K  + P V TY+I+I  + K   +E+  E F K
Sbjct: 209 MTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMK 268

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII-SAYGQAG 290
           M      PN++T+ +L++ + KAG++     +  ++E          +N +I S   + G
Sbjct: 269 MIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRG 328

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAY-NALGMTEAAQ 331
            V    +LF  ++     P  +T+ ++IQ + +A  ++EA Q
Sbjct: 329 GVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQ 370



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 37/275 (13%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           +A TYN +I G+ K  +  +  S FS M +S G  P+  T+N+++      G +    K 
Sbjct: 31  NAHTYNVLIRGFCKGGQMHQAVSVFSDM-KSSGLLPNASTMNTLLLGLCEIGQMSSALKL 89

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF-- 216
           + E           + NIL + +  AG      + +  M+K        TYN+V++    
Sbjct: 90  FREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCW 149

Query: 217 --GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA------------------------ 250
               A  +E+  E+FK+MK  G++P+  +Y  L+SA                        
Sbjct: 150 ENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPDIM 209

Query: 251 --------YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
                   Y K G   +  S+++++  +    +   ++ II+ Y +   VE+  E+F+ M
Sbjct: 210 TYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKM 269

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            E +CVP+ +TF T+I  +   GM E A  L  +M
Sbjct: 270 IESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEM 304



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC + + A L FE M   G  P+  ++  L+    ++   ++    +  M +   CKPDV
Sbjct: 430 KCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHA-EGCKPDV 488

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEE 118
            TY+ LI      +R +  +++     + G+ C+    T+N +I G    KK EE
Sbjct: 489 ITYNCLISGLCSANRVEDAQRL-----FDGMACAPNVTTFNFLIRGLCAQKKVEE 538



 Score = 45.4 bits (106), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 50/119 (42%)

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N L      A  +D+   +   +    F P   TYN++I  F K G + +    F  MK 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            G+ PN+ T  +L+    + G +     + R+++    +  +   N ++  +  AG V 
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVR 119


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 151/332 (45%), Gaps = 10/332 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K+ EQA +    M+S G  P V  YTA++ A      L EA   + +M +  +  P
Sbjct: 21  LCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMAN-RNLTP 79

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TY++LI    K  R D    +L++M    +  +AVTYN++I G  KA++  E     
Sbjct: 80  NVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVP-TAVTYNSLISGLCKAERASEAYDLL 138

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV S GC PDIFT  ++I+ +  S   +   + + +    G + D+ T + L     +
Sbjct: 139 EEMVYS-GCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCK 197

Query: 184 AGMYDKMRSVMDFMQKRF----FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            G   +++  +D   +        P  VTYN +I  F + G +++     ++M   G  P
Sbjct: 198 EG---RLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSP 254

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +TY +L++ + K   +     +L Q+    +  D   F  ++    +   +     + 
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHIL 314

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
             M+ + C P   T+ T++  Y      E A+
Sbjct: 315 GEMRRKSCSPTVYTYNTILDGYCRANQLEEAR 346



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 142/323 (43%), Gaps = 6/323 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A    E M +  L P+V  YT L+    + G +DEA + ++ M+    C P   TY+ L
Sbjct: 64  EARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK--KCVPTAVTYNSL 121

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K  R      +L EM Y G      TY T+I G+ K+KK ++    F  +V  G 
Sbjct: 122 ISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGF 181

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKM 190
             PD+ T + +I      G +++    +      G    +  T N L   + R G  D+ 
Sbjct: 182 -RPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEA 240

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            ++++ M +    P VVTY  ++  F K   ++   +   +M  +G+ P+ +T+ SL+  
Sbjct: 241 MNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDG 300

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +   +     IL ++           +N I+  Y +A  +E+  +  L  +E  C P+
Sbjct: 301 LCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFML--EEMDCPPN 358

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
            ++F  MI+    +  +  A  L
Sbjct: 359 VVSFNIMIRGLCKVNRSSEAMEL 381



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 143/334 (42%), Gaps = 8/334 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K+ + A  +FE +++ G +P V  Y+ L+    + G L EA      M     C P+ 
Sbjct: 162 KSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNT 221

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ LI    +  + D    +L  M+  G     VTY T+++G+ K  + ++     + 
Sbjct: 222 VTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQ 281

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M    G  PD+ T  S++        +        E         + T N +   Y RA 
Sbjct: 282 MTRK-GLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRAN 340

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             ++ R  M  +++    P VV++NI+I    K     +  E  ++ + R   P+ + Y 
Sbjct: 341 QLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYT 398

Query: 246 SLVSAYSKAGLIMKVDSILRQ-VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           +++    +   + +   + R+ +E    + ++  ++ +++    AG +++         E
Sbjct: 399 TVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYI----E 454

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + CVP+  T+  +I A+      E A+ L + M+
Sbjct: 455 KGCVPNIGTYNLLIDAFRKANRDEDARELLDDMV 488



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 4/290 (1%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           YT+L+    +   L++A   +  M S     PDVYTY+ +I +    +R     K L EM
Sbjct: 14  YTSLIQGLCKVKRLEQALIFLGKMVS-KGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
           +   +  + VTY  +IDG  K  + +E  +  S M +   C P   T NS+IS    +  
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTYNSLISGLCKAER 130

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
             +      E    G   DI T   L   + ++   D    V + +  R F P VVTY+ 
Sbjct: 131 ASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC 190

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           +I+   K G +++  + F +M   G   PN++TY SL+S + + G + +  ++L ++  +
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAET 250

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
               D   +  +++ + +   ++   +L   M  +   PD +TF +++  
Sbjct: 251 GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDG 300



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 38/259 (14%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L E M   G  P V  YT L++ + +   LD+A+  +N M +     PDV T++ 
Sbjct: 238 DEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQM-TRKGLTPDVVTFTS 296

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES--------- 121
           L+    + +R      IL EM       +  TYNTI+DGY +A + EE            
Sbjct: 297 LMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMDCP 356

Query: 122 ----SFSAMVES-------------------GGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
               SF+ M+                       C+PD+    ++I        +++  + 
Sbjct: 357 PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRV 416

Query: 159 YNE-FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
           Y +     G   +  T + L      AGM D+ R  ++    +   P + TYN++I+ F 
Sbjct: 417 YRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIE----KGCVPNIGTYNLLIDAFR 472

Query: 218 KAGHIEKMEEYFKKMKHRG 236
           KA   E   E    M  RG
Sbjct: 473 KANRDEDARELLDDMVQRG 491



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 39/243 (16%)

Query: 98  CSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
           CSA  VTY ++I G  K K+ E+       MV S G HPD++T  ++I A      + + 
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMV-SKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            K+  E                                   M  R   P VVTY ++I+ 
Sbjct: 66  RKFLEE-----------------------------------MANRNLTPNVVTYTVLIDG 90

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K G +++      KM+ + + P ++TY SL+S   KA    +   +L ++  S  I D
Sbjct: 91  LCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPD 149

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +  +I+ + ++   +    +F  +  R   PD +T++ +I      G  + A +L  
Sbjct: 150 IFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFG 209

Query: 336 KMI 338
           +MI
Sbjct: 210 RMI 212



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 1/143 (0%)

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M  + F P V TY  VI        + +  ++ ++M +R + PN +TY  L+    K G 
Sbjct: 37  MVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGR 96

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + +  ++L ++     +     +N +IS   +A    +  +L   M    C+PD  T+ T
Sbjct: 97  VDEAVALLSKMRKK-CVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTT 155

Query: 317 MIQAYNALGMTEAAQNLENKMIA 339
           +I  +     ++ A  +  +++A
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVA 178



 Score = 41.2 bits (95), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 49/127 (38%), Gaps = 4/127 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +  +A  L E        P V +YT ++    +   +DEA      M     C P
Sbjct: 369 LCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLP 428

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TYS L+         D     + +    G   +  TYN +ID + KA + E+     
Sbjct: 429 NSITYSTLVTGLCNAGMLDRARGYIEK----GCVPNIGTYNLLIDAFRKANRDEDARELL 484

Query: 124 SAMVESG 130
             MV+ G
Sbjct: 485 DDMVQRG 491


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 145/326 (44%), Gaps = 8/326 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M  DG+ P+   Y AL++   ++  +  AF  +N M   + C P++ TY+ +IK  
Sbjct: 377 LFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR-NGCSPNIVTYNEMIKGY 435

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                      ++  M   G   + VTYNTII GY  +            M   GGC PD
Sbjct: 436 CILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM-RDGGCKPD 494

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
            ++   +I  +     I KME  +  FN M   G+  +  T   L   Y +    D   S
Sbjct: 495 EWSYTELICGFCK---ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +++ M++    P V TYN++I    K  +    EE  K M   G+ PN +TY +++    
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLC 611

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           K G       +  ++     + +   ++ +I A GQ G VE+   LF  ++    +PD I
Sbjct: 612 KNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEI 671

Query: 313 TFATMIQAYNALGMTEAAQNLENKMI 338
           T+  MI+AY   G  E A N   +MI
Sbjct: 672 TYVKMIEAYIMSGKVEHAFNFLGRMI 697



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 147/325 (45%), Gaps = 22/325 (6%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + E A  LF  M+ DGL P+   YTAL+  Y +   LD A S +  MK  S
Sbjct: 501 LICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKR-S 559

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C+P+V TY++LI   TK + F   E++   M   GI  + VTY  +IDG  K       
Sbjct: 560 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F+ M+E  GC P++ T +S+I A G  G +E+ E  + E    G+  D  T   + +
Sbjct: 620 LEMFNKMIEQ-GCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIE 678

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +Y  +G  +   + +  M K    PT+ TY ++I+            EY    +     P
Sbjct: 679 AYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN--------EYLLADQRLAALP 730

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +  CS     +    +  + + L ++   D  L     N ++S    AG   +  EL 
Sbjct: 731 DVVPNCSFGYQTTDQDAVSVMSAKLAEL---DPGLSVQVQNALVSNLSTAGRWFEANELL 787

Query: 300 LTMKERHCVPDNITFATMIQAYNAL 324
            +M  +   PD        +AYN+L
Sbjct: 788 GSMISQGLCPDQ-------EAYNSL 805



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 153/373 (41%), Gaps = 37/373 (9%)

Query: 2   VMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN------ 53
           ++LG C++ +  S L  F  M  +G +P+   Y+ L++    SG ++EAF  I       
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315

Query: 54  ----------------DMKSVSD------------CKPDVYTYSILIKSCTKFHRFDLIE 85
                           DM    D            C+P+VYTY+ LI          +  
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI 375

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +   MS  G+  + VTYN +I+   + ++ +      + M  +G C P+I T N MI  
Sbjct: 376 GLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNG-CSPNIVTYNEMIKG 434

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           Y   G+ +K     N     G  A++ T N + K Y  +G       ++D M+     P 
Sbjct: 435 YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
             +Y  +I  F K   +E     F +M   G+ PN +TY +L+  Y K   +    S+L 
Sbjct: 495 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 554

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            ++ S    +   +N +I    +  +     EL   M E    P+ +T+  MI      G
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614

Query: 326 MTEAAQNLENKMI 338
            T  A  + NKMI
Sbjct: 615 STSLALEMFNKMI 627



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 152/330 (46%), Gaps = 18/330 (5%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV--SDCKPDVYTYSILIKS 74
           +  MLS+G++P++ +Y A+++A  + G + +A  TI  MK V  S+  PD +TY+ +I  
Sbjct: 203 YHRMLSEGVQPNLLIYNAVINALCKDGNVADA-ETI--MKKVFESEMSPDTFTYTSMILG 259

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             + H  D   ++  +M+  G E + VTY+T+I+G   + +  E       M+   G  P
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILH-GILP 318

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
              T    I A  + G  E   + + +    G + ++ T   L      +G+      + 
Sbjct: 319 TAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLF 378

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY--- 251
             M +   FP  VTYN +I    +   I+        M   G  PN +TY  ++  Y   
Sbjct: 379 HRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCIL 438

Query: 252 ---SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               KA L+M  +++L++  +++++     +N II  Y  +G+      +   M++  C 
Sbjct: 439 GDPKKAMLVM--NNMLQRGHSANLVT----YNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMI 338
           PD  ++  +I  +  +   E+A  L N+M+
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMV 522



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 139/323 (43%), Gaps = 2/323 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  LF  M + G +P+V  YTAL+S    SGLL  A    + M S     P+  TY+ 
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVFPNTVTYNA 395

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  R      +L  M   G   + VTYN +I GY      ++     + M++ G
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
               ++ T N++I  Y +SGN     +  +     G K D  +   L   + +    +  
Sbjct: 456 H-SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESA 514

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + + M      P  VTY  +I+ + K   ++      + MK  G +PN  TY  L+  
Sbjct: 515 FGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHG 574

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            +K       + + + +    +  +   +  +I    + G      E+F  M E+ C+P+
Sbjct: 575 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
            +T++++I+A    G  E A+NL
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENL 657



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%), Gaps = 9/289 (3%)

Query: 54  DMKSVSDCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDG 109
           DM S S  +  ++ YS L+   ++        D   ++L+E    G++ + + YN +I+ 
Sbjct: 169 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE----GVQPNLLIYNAVINA 224

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
             K     + E+    + ES    PD FT  SMI  +    +++   + +N+    G + 
Sbjct: 225 LCKDGNVADAETIMKKVFESE-MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEP 283

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           +  T + L      +G  ++   ++  M      PT  T    I      G  E     F
Sbjct: 284 NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLF 343

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
             MK++G +PN  TY +L+S    +GL+     +  ++    V  +T  +N +I+   + 
Sbjct: 344 VDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVEN 403

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             ++    +   M    C P+ +T+  MI+ Y  LG  + A  + N M+
Sbjct: 404 RRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 82/165 (49%), Gaps = 1/165 (0%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           ++++   + +  M   M S +D + +      +  Y+ ++    + G    + + + +M 
Sbjct: 149 IHLIKSCHSKEAMARTM-SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 207

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G++PN + Y ++++A  K G +   ++I+++V  S++  DT  +  +I  + +  D++
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              ++F  M +  C P+ +T++T+I      G    A +L  +MI
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 90/216 (41%)

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           SF  M+   G    +F  ++++      G    +   Y+     GV+ ++   N +  + 
Sbjct: 166 SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINAL 225

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G      ++M  + +    P   TY  +I    +   ++   + F +M   G +PN+
Sbjct: 226 CKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNT 285

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L++    +G + +   ++R++    ++         I A    G  E    LF+ 
Sbjct: 286 VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVD 345

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           MK + C P+  T+  +I      G+ + A  L ++M
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM 381



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 110/274 (40%), Gaps = 26/274 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  + E+A  LF  +   GL P    Y  ++ AY  SG ++ AF+ +  M   + C+P
Sbjct: 645 LGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK-AGCQP 703

Query: 64  DVYTYSILIK---------------------SCTKFHRF---DLIEKILAEMSYLGIECS 99
            ++TY +LIK                     +C+  ++    D +  + A+++ L    S
Sbjct: 704 TLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLS 763

Query: 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
               N ++     A ++ E      +M+  G C PD    NS++ +     N++     +
Sbjct: 764 VQVQNALVSNLSTAGRWFEANELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVF 822

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
              +  G +  +     L  +  +     + R   + M  R + P  V   ++I+   + 
Sbjct: 823 KHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRD 882

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           G+ +   E+   M+ R   P+   Y  L    SK
Sbjct: 883 GYKDLCMEFLHIMETRRYMPSFHIYTILAREASK 916


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 145/326 (44%), Gaps = 8/326 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M  DG+ P+   Y AL++   ++  +  AF  +N M   + C P++ TY+ +IK  
Sbjct: 377 LFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR-NGCSPNIVTYNEMIKGY 435

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                      ++  M   G   + VTYNTII GY  +            M   GGC PD
Sbjct: 436 CILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLM-RDGGCKPD 494

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
            ++   +I  +     I KME  +  FN M   G+  +  T   L   Y +    D   S
Sbjct: 495 EWSYTELICGFCK---ISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATS 551

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +++ M++    P V TYN++I    K  +    EE  K M   G+ PN +TY +++    
Sbjct: 552 LLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLC 611

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           K G       +  ++     + +   ++ +I A GQ G VE+   LF  ++    +PD I
Sbjct: 612 KNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEI 671

Query: 313 TFATMIQAYNALGMTEAAQNLENKMI 338
           T+  MI+AY   G  E A N   +MI
Sbjct: 672 TYVKMIEAYIMSGKVEHAFNFLGRMI 697



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 147/325 (45%), Gaps = 22/325 (6%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + E A  LF  M+ DGL P+   YTAL+  Y +   LD A S +  MK  S
Sbjct: 501 LICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKR-S 559

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C+P+V TY++LI   TK + F   E++   M   GI  + VTY  +IDG  K       
Sbjct: 560 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F+ M+E  GC P++ T +S+I A G  G +E+ E  + E    G+  D  T   + +
Sbjct: 620 LEMFNKMIEQ-GCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIE 678

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +Y  +G  +   + +  M K    PT+ TY ++I+            EY    +     P
Sbjct: 679 AYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN--------EYLLADQRLAALP 730

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +  CS     +    +  + + L ++   D  L     N ++S    AG   +  EL 
Sbjct: 731 DVVPNCSFGYQTTDQDAVSVMSAKLAEL---DPGLSVQVQNALVSNLSTAGRWFEANELL 787

Query: 300 LTMKERHCVPDNITFATMIQAYNAL 324
            +M  +   PD        +AYN+L
Sbjct: 788 GSMISQGLCPDQ-------EAYNSL 805



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 153/373 (41%), Gaps = 37/373 (9%)

Query: 2   VMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN------ 53
           ++LG C++ +  S L  F  M  +G +P+   Y+ L++    SG ++EAF  I       
Sbjct: 256 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 315

Query: 54  ----------------DMKSVSD------------CKPDVYTYSILIKSCTKFHRFDLIE 85
                           DM    D            C+P+VYTY+ LI          +  
Sbjct: 316 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAI 375

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +   MS  G+  + VTYN +I+   + ++ +      + M  +G C P+I T N MI  
Sbjct: 376 GLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNG-CSPNIVTYNEMIKG 434

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           Y   G+ +K     N     G  A++ T N + K Y  +G       ++D M+     P 
Sbjct: 435 YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 494

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
             +Y  +I  F K   +E     F +M   G+ PN +TY +L+  Y K   +    S+L 
Sbjct: 495 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 554

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            ++ S    +   +N +I    +  +     EL   M E    P+ +T+  MI      G
Sbjct: 555 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 614

Query: 326 MTEAAQNLENKMI 338
            T  A  + NKMI
Sbjct: 615 STSLALEMFNKMI 627



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 152/330 (46%), Gaps = 18/330 (5%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV--SDCKPDVYTYSILIKS 74
           +  MLS+G++P++ +Y A+++A  + G + +A  TI  MK V  S+  PD +TY+ +I  
Sbjct: 203 YHRMLSEGVQPNLLIYNAVINALCKDGNVADA-ETI--MKKVFESEMSPDTFTYTSMILG 259

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             + H  D   ++  +M+  G E + VTY+T+I+G   + +  E       M+   G  P
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILH-GILP 318

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
              T    I A  + G  E   + + +    G + ++ T   L      +G+      + 
Sbjct: 319 TAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLF 378

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY--- 251
             M +   FP  VTYN +I    +   I+        M   G  PN +TY  ++  Y   
Sbjct: 379 HRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCIL 438

Query: 252 ---SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               KA L+M  +++L++  +++++     +N II  Y  +G+      +   M++  C 
Sbjct: 439 GDPKKAMLVM--NNMLQRGHSANLVT----YNTIIKGYCDSGNTTSALRILDLMRDGGCK 492

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMI 338
           PD  ++  +I  +  +   E+A  L N+M+
Sbjct: 493 PDEWSYTELICGFCKISKMESAFGLFNEMV 522



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 139/323 (43%), Gaps = 2/323 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  LF  M + G +P+V  YTAL+S    SG+L  A    + M S     P+  TY+ 
Sbjct: 337 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRM-SRDGVFPNTVTYNA 395

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  R      +L  M   G   + VTYN +I GY      ++     + M++ G
Sbjct: 396 LINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 455

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
               ++ T N++I  Y +SGN     +  +     G K D  +   L   + +    +  
Sbjct: 456 H-SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESA 514

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + + M      P  VTY  +I+ + K   ++      + MK  G +PN  TY  L+  
Sbjct: 515 FGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHG 574

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            +K       + + + +    +  +   +  +I    + G      E+F  M E+ C+P+
Sbjct: 575 LTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPN 634

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
            +T++++I+A    G  E A+NL
Sbjct: 635 LLTYSSLIRALGQEGKVEEAENL 657



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 123/289 (42%), Gaps = 9/289 (3%)

Query: 54  DMKSVSDCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDG 109
           DM S S  +  ++ YS L+   ++        D   ++L+E    G++ + + YN +I+ 
Sbjct: 169 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE----GVQPNLLIYNAVINA 224

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
             K     + E+    + ES    PD FT  SMI  +    +++   + +N+    G + 
Sbjct: 225 LCKDGNVADAETIMKKVFESE-MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEP 283

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           +  T + L      +G  ++   ++  M      PT  T    I      G  E     F
Sbjct: 284 NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLF 343

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
             MK++G +PN  TY +L+S    +G++     +  ++    V  +T  +N +I+   + 
Sbjct: 344 VDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVEN 403

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             ++    +   M    C P+ +T+  MI+ Y  LG  + A  + N M+
Sbjct: 404 RRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 82/165 (49%), Gaps = 1/165 (0%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           ++++   + +  M   M S +D + +      +  Y+ ++    + G    + + + +M 
Sbjct: 149 IHLIKSCHSKEAMARTM-SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 207

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G++PN + Y ++++A  K G +   ++I+++V  S++  DT  +  +I  + +  D++
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              ++F  M +  C P+ +T++T+I      G    A +L  +MI
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 110/274 (40%), Gaps = 26/274 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  + E+A  LF  +   GL P    Y  ++ AY  SG ++ AF+ +  M   + C+P
Sbjct: 645 LGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK-AGCQP 703

Query: 64  DVYTYSILIK---------------------SCTKFHRF---DLIEKILAEMSYLGIECS 99
            ++TY +LIK                     +C+  ++    D +  + A+++ L    S
Sbjct: 704 TLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLS 763

Query: 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
               N ++     A ++ E      +M+  G C PD    NS++ +     N++     +
Sbjct: 764 VQVQNALVSNLSTAGRWFEANELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVF 822

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
              +  G +  +     L  +  +     + R   + M  R + P  V   ++I+   + 
Sbjct: 823 KHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRD 882

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           G+ +   E+   M+ R   P+   Y  L    SK
Sbjct: 883 GYKDLCMEFLHIMETRRYMPSFHIYTILAREASK 916



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 90/216 (41%)

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           SF  M+   G    +F  ++++      G    +   Y+     GV+ ++   N +  + 
Sbjct: 166 SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINAL 225

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G      ++M  + +    P   TY  +I    +   ++   + F +M   G +PN+
Sbjct: 226 CKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNT 285

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L++    +G + +   ++R++    ++         I A    G  E    LF+ 
Sbjct: 286 VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVD 345

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           MK + C P+  T+  +I      G+ + A  L ++M
Sbjct: 346 MKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRM 381


>gi|302143623|emb|CBI22376.3| unnamed protein product [Vitis vinifera]
          Length = 554

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 4/328 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  E+A+ + ++M+  G  P +  Y  LV    + GLL  A   +++M S+S C P
Sbjct: 175 LIKLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEM-SLSGCPP 233

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESS 122
           D  TY+ +++       FD       +    G     +TY  +I+   K     + ME  
Sbjct: 234 DAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVL 293

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
               +E  GC+PDI T NS+++     G  E            G+  +  T N L  S  
Sbjct: 294 EDMAIE--GCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLC 351

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G +D++  ++  M      PTVVTYNI+I    K G +++   +F +M      P+ I
Sbjct: 352 THGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDII 411

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L++A  K G++ +   +L  + ++        +N +I    + G +EK  EL+  M
Sbjct: 412 TYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEM 471

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
            ER   PD+IT  T+      L + E A
Sbjct: 472 IERGFAPDDITHRTLFWGLFRLDLVEDA 499



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 132/294 (44%), Gaps = 2/294 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA   ++  L  G    +  YT L+    +     +A   + DM ++  C PD+ TY+ 
Sbjct: 252 DQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDM-AIEGCYPDIVTYNS 310

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  +++    I+  +   G+  + VTYNT++        ++E++     M  + 
Sbjct: 311 LVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTS 370

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P + T N +I+     G +++   ++++        DI T N L  +  + GM D+ 
Sbjct: 371 Q-PPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEA 429

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  +      P ++TYNIVI+   K G +EK  E + +M  RG  P+ IT+ +L   
Sbjct: 430 LHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWG 489

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +  L+     IL+++   +  +    F  +I     AG +E+  +L   + E
Sbjct: 490 LFRLDLVEDALVILKEMNKRNQRIKNSAFRFVIHGLCAAGMIEEANQLHQKLTE 543



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 3/235 (1%)

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           +I G  K +  E        MV SGG  PDI T N ++      G ++   +  +E +L 
Sbjct: 171 LIRGLIKLESTERATRVLKIMVMSGGI-PDIITYNMLVGGLCKKGLLKTAIELLDEMSLS 229

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK-AGHIEK 224
           G   D  T N + +     G +D+         ++     ++TY ++IE   K  G ++ 
Sbjct: 230 GCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQA 289

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
           ME   + M   G  P+ +TY SLV+   K G       I+  + +  +  +T  +N ++ 
Sbjct: 290 ME-VLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLH 348

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +    G  +++ E+ L M      P  +T+  +I      G+ + A N  ++M++
Sbjct: 349 SLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVS 403


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 152/337 (45%), Gaps = 1/337 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + M  K  + E A  L E M   G  P+V  YT L+   G+ G +D+A+S   +M     
Sbjct: 272 LAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLK-DG 330

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDV   + LI    +  R +   K+  +M  L    + VTYNT+I    ++K      
Sbjct: 331 CKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEA 390

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           + +   +++ G  P  FT   +I  +  +  +EK      E +  G          L  S
Sbjct: 391 ALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDS 450

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            GRA  Y+    +   +++     +   Y ++I+ FG  G +    + F + +  G  P+
Sbjct: 451 LGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPD 510

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY +L+S   +AG+I +  S++R +  +    D    N I++   + G  ++  E+F 
Sbjct: 511 VYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFT 570

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            MKE   +PD +++ T++   +  GM E A  L  +M
Sbjct: 571 KMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREM 607



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 144/334 (43%), Gaps = 6/334 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK K   +A  +F  +      P+  VY  L+      G  ++     N++ S  +C 
Sbjct: 168 ILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCS 227

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TYS LI +  K  R+D   ++  EM   G+  +   Y TI+  Y K  K E     
Sbjct: 228 PDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRL 287

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNILTKS 180
              M +  GC P +FT   +I   G  G ++     +  FN++  G K D+  +N L   
Sbjct: 288 VEEM-KGKGCAPTVFTYTELIKGLGKVGRVDDAYSLF--FNMLKDGCKPDVVLINNLINI 344

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKP 239
            GRAG  +    +   M      P VVTYN VI+  F       +   +F+KMK  G+ P
Sbjct: 345 LGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAP 404

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +S TY  L+  + K   + K   +L +++          +  +I + G+A   E   ELF
Sbjct: 405 SSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELF 464

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             +KE         +A MI+ +   G    A +L
Sbjct: 465 QELKENCGRSSARVYAVMIKHFGNCGRLSDAVDL 498



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 144/324 (44%), Gaps = 38/324 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + + A  LF  ML DG KP V +   L++  G++G L++A      M S+  C P
Sbjct: 310 LGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQ-CAP 368

Query: 64  DV------------------------------------YTYSILIKSCTKFHRFDLIEKI 87
           +V                                    +TY+ILI    K +R +    +
Sbjct: 369 NVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLL 428

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
           L EM   G       Y ++ID  G+AK++E     F  + E+ G          MI  +G
Sbjct: 429 LEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCG-RSSARVYAVMIKHFG 487

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
           N G +      + E   +G   D+ T N L     RAGM D+  S+M  M++    P + 
Sbjct: 488 NCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIK 547

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           ++NI++    K G  ++  E F KMK   + P++++Y +++S  S+AG+      ++R++
Sbjct: 548 SHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREM 607

Query: 268 ENSDVILDTPFFNCIISAYGQAGD 291
           +      D+  ++ I+ A G+  +
Sbjct: 608 KLKGFEYDSITYSSILEAVGKVDE 631



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 119/293 (40%), Gaps = 42/293 (14%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
            Y AL+    +SGL+DE + TI DM                I+S                
Sbjct: 126 TYMALIRCLEESGLVDEMWRTIQDM----------------IRS---------------- 153

Query: 91  MSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
                  CS     ++ I+   GKAK   +  S F   ++   C+P     N++I    +
Sbjct: 154 ------PCSVGPAEWSEILKILGKAKMVNKALSVFY-QIKGRKCNPTATVYNTLILMLMH 206

Query: 149 SGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            G+ EK+ + YNE    G    D  T + L  ++G+   YD    + D M++    PT  
Sbjct: 207 EGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEK 266

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            Y  ++  + K   +E      ++MK +G  P   TY  L+    K G +    S+   +
Sbjct: 267 IYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNM 326

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
                  D    N +I+  G+AG +E   +LF  M    C P+ +T+ T+I+A
Sbjct: 327 LKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKA 379



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 4/147 (2%)

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           +++ F     TY  +I    ++G +++M    + M           +  ++    KA ++
Sbjct: 116 KRQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMV 175

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERHCVPDNITFAT 316
            K  S+  Q++          +N +I      G  EK+ EL+  +  E +C PD IT++ 
Sbjct: 176 NKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSA 235

Query: 317 MIQAYNALGMTEAAQNLENKMIAMKEN 343
           +I A+  L   + A  L ++   MKEN
Sbjct: 236 LISAFGKLERYDFAFRLFDE---MKEN 259


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 156/340 (45%), Gaps = 3/340 (0%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    ++A  + E+M    + P +  Y  L++    +G + E    ++ MKS+   +
Sbjct: 284 GYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLK-LQ 342

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TY+ LI  C +       +K++ +M   G++ + VT+N  +    K +K EE+   
Sbjct: 343 PDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRK 402

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              +VE  G  PDI T +++I AY   G++    +   E    G+K +  TLN +  +  
Sbjct: 403 VKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALC 462

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    D+  +++D   KR +    VTY  +I  + +   +EK  E + +MK   + P   
Sbjct: 463 KERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVT 522

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+ SL+      G          ++  S ++ D   FN II  Y + G VEK  E +   
Sbjct: 523 TFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNES 582

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
            +    PDN T   ++      GMTE A N  N +I  +E
Sbjct: 583 IKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITERE 622



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 167/349 (47%), Gaps = 13/349 (3%)

Query: 2   VMLGKCKQPEQASL-----LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           +++G  + P   S+     +F+ M+  G+   V  +  LV+ Y   G L++A   +  M 
Sbjct: 172 LLIGLVRYPSSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMV 231

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           S  +  PD  TY+ ++K+ +K  R   ++ +L +M   G+  + VTYN ++ GY K    
Sbjct: 232 SEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSL 291

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +E       M ++    PD+ T N +I+   N+G+I +  +  +    + ++ D+ T N 
Sbjct: 292 KEAFQIVELMKQT-NILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNT 350

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-- 234
           L       G+  + + +M+ M+     P  VT+NI ++   K    EK EE  +K+K   
Sbjct: 351 LIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKE---EKREEVTRKVKELV 407

Query: 235 --RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
              G  P+ +TY +L+ AY K G +     ++R++    + ++T   N I+ A  +   V
Sbjct: 408 EMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKV 467

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           ++   L  +  +R  + D +T+ T+I  Y      E A  + ++M  +K
Sbjct: 468 DEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIK 516



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 139/315 (44%), Gaps = 5/315 (1%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF-HRFDLI- 84
           PS  ++   +SAY  +G    A      M  +   KP++ T + L+    ++   F +  
Sbjct: 129 PSKALFDIALSAYLHAGKPHVALQVFQKMIRLK-LKPNLLTCNTLLIGLVRYPSSFSIAS 187

Query: 85  -EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             ++  +M  +G+     T+N +++GY    K E+       MV     +PD  T N+++
Sbjct: 188 AREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTIL 247

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A    G +  ++    +    G+  +  T N L   Y + G   +   +++ M++    
Sbjct: 248 KAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNIL 307

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P + TYNI+I     AG I +  E    MK   ++P+ +TY +L+    + GL ++   +
Sbjct: 308 PDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKL 367

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQAYN 322
           + Q+EN  V  +    N  +    +    E++      + E H   PD +T+ T+I+AY 
Sbjct: 368 MEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYL 427

Query: 323 ALGMTEAAQNLENKM 337
            +G    A  +  +M
Sbjct: 428 KVGDLSGALEMMREM 442



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 128/294 (43%), Gaps = 38/294 (12%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+ E    + E++   G  P +  Y  L+ AY + G L  A   + +M      K +  T
Sbjct: 395 KREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQ-KGIKMNTIT 453

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-------EME 120
            + ++ +  K  + D    +L      G     VTY T+I GY + +K E       EM+
Sbjct: 454 LNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMK 513

Query: 121 --------SSFSAMVESGGCH--------------------PDIFTLNSMISAYGNSGNI 152
                   ++F++++  G CH                    PD  T NS+I  Y   G +
Sbjct: 514 RIKITPTVTTFNSLI-GGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRV 572

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           EK  ++YNE      K D  T NIL     + GM +K  +  + +       TV TYN +
Sbjct: 573 EKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREVDTV-TYNTM 631

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           I  F K   +++  +   +M+ + ++P+  TY S++++  + G + + D +L++
Sbjct: 632 ISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKK 685


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 155/327 (47%), Gaps = 2/327 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +++ M+ DG+ PSV  Y+ L+ A+G+   +D     +N+M++    KP+VY+Y+I 
Sbjct: 189 EAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEA-RGVKPNVYSYTIC 247

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I+   +  RFD    IL +M   G +   VT+  II     A +  + ++ F  M  S  
Sbjct: 248 IRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQ 307

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD  T  +++   G+SG+ + + + +N     G   +I +   +  +  + G  D+  
Sbjct: 308 -KPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEAL 366

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           +V D M+++   P   +YN +I  F KA   ++  E F  M   G  PN  T+   ++ Y
Sbjct: 367 AVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYY 426

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K+G  +K       +++  ++ D    N ++ +   +G +     +F  +K     PD 
Sbjct: 427 GKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDT 486

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           IT+  MI+  +     + A N  + M+
Sbjct: 487 ITYTMMIKCCSKASKADEAMNFFSDMV 513



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 154/321 (47%), Gaps = 5/321 (1%)

Query: 1   MVMLGKCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           + +L KC     +  + EV   M++DG   ++  YTA+V A  Q G +DEA +  ++MK 
Sbjct: 315 ITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKE 374

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
                P+ Y+Y+ LI    K   FD   ++   M+  G   +  T+   I+ YGK+ +  
Sbjct: 375 -KGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSL 433

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +    +  M +S G  PD+   N+++ +   SG +   ++ + E   MGV  D  T  ++
Sbjct: 434 KAIQRYEHM-KSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMM 492

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            K   +A   D+  +    M +    P V+  N +I+T  K G   +  + F K+K   +
Sbjct: 493 IKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKI 552

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +P + TY +L+S   + G + +V  +L ++  +    +   +N ++    + G+V    +
Sbjct: 553 EPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAID 612

Query: 298 LFLTMKERHCVPDNITFATMI 318
           +  +M E+ C PD  ++ T++
Sbjct: 613 MLYSMTEKGCAPDLSSYNTVM 633



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 153/371 (41%), Gaps = 35/371 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           MV  GK +  +    L   M + G+KP+V  YT  +   GQ+   DEA+  +  M+  S 
Sbjct: 213 MVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMED-SG 271

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDV T++++I+      R    + +  +M     +   VTY T++D  G +   + + 
Sbjct: 272 CKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVV 331

Query: 121 SSFSAMVESG----------------------------------GCHPDIFTLNSMISAY 146
             ++AMV  G                                  G  P+ ++ NS+IS +
Sbjct: 332 EVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGF 391

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +   ++  + +N  N  G   +  T  +    YG++G   K     + M+ +   P V
Sbjct: 392 LKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDV 451

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
              N V+ +   +G +   +  F ++K  G+ P++ITY  ++   SKA    +  +    
Sbjct: 452 AAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSD 511

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +  S  + D    N +I    + G   +  +LF  +KE    P N T+ T++      G 
Sbjct: 512 MVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGK 571

Query: 327 TEAAQNLENKM 337
            +    L  +M
Sbjct: 572 VKEVMQLLEEM 582



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 157/335 (46%), Gaps = 2/335 (0%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K K+  +A  LF      G+      Y +L+       L+D A     +MK +  C P
Sbjct: 741  LCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLG-CGP 799

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            D +TY++++ +  K  R + + K+  EM   G E + VTYNTII G  K+K+ E+    +
Sbjct: 800  DEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLY 859

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              ++ S G  P   T   ++     SG +   E  +NE    G + +    NIL   +  
Sbjct: 860  YNLM-SEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRI 918

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            AG  + +  + + M ++   P + +Y I+I+T   AG +     YF+++   G++P+ I 
Sbjct: 919  AGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIV 978

Query: 244  YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
            Y  L+    K+  I +  S+  +++   +I +   +N +I   G+AG   +  +++  + 
Sbjct: 979  YNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELL 1038

Query: 304  ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +   P   T+  +I+ Y+  G T+ A     +MI
Sbjct: 1039 RKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMI 1073



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 2/244 (0%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K K+ EQA  L+  ++S+G  P+   Y  L+    +SG + +A +  N+M     C+P
Sbjct: 846  LVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYG-CEP 904

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            +   Y+IL+         + + ++  +M   GI     +Y  +ID    A +  +    F
Sbjct: 905  NCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYF 964

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              + E G   PD+   N +I   G S  IE+    +NE    G+  ++ T N L    G+
Sbjct: 965  RQLHELG-LEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGK 1023

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            AG   +   + + + ++ + P+V TYN +I  +  +G  +     + +M   G +PNS T
Sbjct: 1024 AGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPNSST 1083

Query: 244  YCSL 247
            Y  L
Sbjct: 1084 YMQL 1087



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 116/258 (44%), Gaps = 10/258 (3%)

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
           FDL++K +       ++ +  T+ TI  G G          +   M E+G    + +T N
Sbjct: 124 FDLMQKQV-------VKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAG-MSLNAYTYN 175

Query: 141 SMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            +I     SG + E ME  Y      G+   ++T ++L  ++G+    D +  +++ M+ 
Sbjct: 176 GLIYFLVKSGFDAEAME-VYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEA 234

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R   P V +Y I I   G+A   ++      KM+  G KP+ +T+  ++     AG +  
Sbjct: 235 RGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSD 294

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
             ++  +++ SD   D   +  ++   G +GD + + E++  M       + +++  ++ 
Sbjct: 295 AKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVD 354

Query: 320 AYNALGMTEAAQNLENKM 337
           A   +G  + A  + ++M
Sbjct: 355 ALCQVGRVDEALAVFDEM 372



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 134/323 (41%), Gaps = 10/323 (3%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G  P +  Y  ++    +   L+EAF     MK +    PD  T   ++ S   F 
Sbjct: 617 MTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKI--LAPDYATLCTILPS---FV 671

Query: 80  RFDLIEKILAEM-SYL---GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           +  L+++ L  +  Y+   G      +++++++G  K    E+    F+  + S G   +
Sbjct: 672 KNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEK-SIEFAENIASRGILLN 730

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            F L  +I          +  + +N+F  +GV     + N L +      + D    +  
Sbjct: 731 DFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFT 790

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M++    P   TYN++++  GK+  +E+M +  K+M  +G +   +TY +++S   K+ 
Sbjct: 791 EMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSK 850

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   +   + +         +  ++    ++G +     LF  M E  C P+   + 
Sbjct: 851 RLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYN 910

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
            ++  +   G TE    L  KM+
Sbjct: 911 ILLNGHRIAGNTENVCQLFEKMV 933



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%)

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P+V TY++++  FGK   ++ +     +M+ RG+KPN  +Y   +    +A    +   I
Sbjct: 204 PSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHI 263

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L ++E+S    D      II     AG +     +F  MK     PD +T+ T++     
Sbjct: 264 LGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGD 323

Query: 324 LGMTEAAQNLENKMIA 339
            G +++   + N M+A
Sbjct: 324 SGDSQSVVEVWNAMVA 339



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 86/201 (42%), Gaps = 9/201 (4%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV---MDFMQ 198
           ++ A+G  G++ ++      F+LM  +     +      +G  G+   +RS    +  M+
Sbjct: 110 LMRAHGRVGDMAQV------FDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMR 163

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +        TYN +I    K+G   +  E +K M   G+ P+  TY  L+ A+ K   + 
Sbjct: 164 EAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVD 223

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
            V  +L ++E   V  +   +   I   GQA   ++   +   M++  C PD +T   +I
Sbjct: 224 TVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVII 283

Query: 319 QAYNALGMTEAAQNLENKMIA 339
           Q     G    A+ +  KM A
Sbjct: 284 QVLCDAGRLSDAKAVFWKMKA 304



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 7/171 (4%)

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L +++GR G    M  V D MQK+     V T+  +    G  G +         M+  G
Sbjct: 110 LMRAHGRVG---DMAQVFDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAG 166

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           M  N+ TY  L+    K+G   +   + + +    +      ++ ++ A+G+  DV+ + 
Sbjct: 167 MSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVL 226

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
            L   M+ R   P+  ++   I+        + A ++  KM    E+SG K
Sbjct: 227 WLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKM----EDSGCK 273


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 156/331 (47%), Gaps = 4/331 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-S 69
           ++A   +  ML  G+ P V  Y ++++A  ++  +D+A   +N M   +   PD  TY S
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK-NGVMPDCMTYNS 271

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           IL   C+     + I   L +M   G+E   VTY+ ++D   K  +  E    F +M + 
Sbjct: 272 ILHGYCSSGQPKEAI-GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G   P+I T  +++  Y   G + +M    +     G+  D    +IL  +Y   G  D+
Sbjct: 331 G-LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQ 389

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              V   M+++   P  VTY  VI    K+G +E    YF++M   G+ P +I Y SL+ 
Sbjct: 390 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 449

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
                    + + ++ ++ +  + L+T FFN II ++ + G V +  +LF  M      P
Sbjct: 450 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           + IT+ T+I  Y   G  + A  L + M+++
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 159/366 (43%), Gaps = 39/366 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A  +   M+ +G+ P    Y +++  Y  SG   EA   +  M+S    +P
Sbjct: 241 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS-DGVEP 299

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TYS+L+    K  R     KI   M+  G++    TY T++ GY       EM    
Sbjct: 300 DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 359

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT----LNILTK 179
             MV +G  HPD +  + +I AY N G +++    +++    G+  +  T    + IL K
Sbjct: 360 DLMVRNG-IHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCK 418

Query: 180 SYGRA--------------------------------GMYDKMRSVMDFMQKRFFFPTVV 207
           S GR                                   +++   ++  M  R      +
Sbjct: 419 S-GRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 477

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            +N +I++  K G + + E+ F+ M   G+KPN ITY +L++ Y  AG + +   +L  +
Sbjct: 478 FFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGM 537

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
            +  +  +T  ++ +I+ Y +   +E    LF  M+     PD IT+  ++Q       T
Sbjct: 538 VSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRT 597

Query: 328 EAAQNL 333
            AA+ L
Sbjct: 598 AAAKEL 603



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 159/343 (46%), Gaps = 7/343 (2%)

Query: 2   VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151

Query: 59  SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
             C P+V++Y+IL+K  C +    + +E   ++A+    G     V+Y T+I+G+ K   
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
            ++  S++  M++  G  PD+ T NS+I+A   +  ++K  +  N     GV  D  T N
Sbjct: 212 SDKAYSTYHEMLDR-GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +   Y  +G   +    +  M+     P VVTY+++++   K G   +  + F  M  R
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G+KP   TY +L+  Y+  G ++++  +L  +  + +  D   F+ +I AY   G V++ 
Sbjct: 331 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQA 390

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +F  M+++   P+ +T+  +I      G  E A     +MI
Sbjct: 391 MLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 135/300 (45%), Gaps = 5/300 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+C +  +   +F+ M   GLKP +  Y  L+  Y   G L E    + D+   +   PD
Sbjct: 315 GRCMEARK---IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPD 370

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            Y +SILI +     + D    + ++M   G+  +AVTY  +I    K+ + E+    F 
Sbjct: 371 HYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M++ G   P     NS+I         E+ E+   E    G+  +    N +  S+ + 
Sbjct: 431 QMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 489

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +   + + M +    P V+TYN +I  +  AG +++  +    M   G+KPN++TY
Sbjct: 490 GRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L++ Y K   +     + +++E+S V  D   +N I+    Q        EL++ + E
Sbjct: 550 STLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITE 609



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 143/319 (44%), Gaps = 4/319 (1%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHR 80
           +D + P +  Y  L+    ++G LD  F+ + ++      + D   ++ L+K  C     
Sbjct: 80  ADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIK-KGFRVDAIAFTPLLKGLCADKRT 138

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFT 138
            D ++ +L  M+ LG   +  +YN ++ G     + +E       M +   GG  PD+ +
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
             ++I+ +   G+ +K    Y+E    G+  D+ T N +  +  +A   DK   V++ M 
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           K    P  +TYN ++  +  +G  ++   + KKM+  G++P+ +TY  L+    K G  M
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +   I   +    +  +   +  ++  Y   G + +M  L   M      PD+  F+ +I
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378

Query: 319 QAYNALGMTEAAQNLENKM 337
            AY   G  + A  + +KM
Sbjct: 379 CAYANQGKVDQAMLVFSKM 397



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 137/303 (45%), Gaps = 2/303 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L  C + E+A  L   ML  G+  +   + +++ ++ + G + E+      M  +   KP
Sbjct: 451 LCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG-VKP 509

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TY+ LI       + D   K+L+ M  +G++ + VTY+T+I+GY K  + E+    F
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ES G  PDI T N ++     +      ++ Y      G + ++ T NI+     +
Sbjct: 570 KEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK 628

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
             + D    +   +          T+NI+I+   K G  ++ ++ F      G+ PN  T
Sbjct: 629 NKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWT 688

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +       GL+ ++D +   +E++   +D+   N I+    Q G++ + G     + 
Sbjct: 689 YRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMID 748

Query: 304 ERH 306
           E+H
Sbjct: 749 EKH 751



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 152/336 (45%), Gaps = 11/336 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA L+F  M   GL P+   Y A++    +SG +++A      M       P    Y+ 
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGLSPGNIVYNS 446

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI      ++++  E+++ EM   GI  + + +N+IID + K  +  E E  F  MV  G
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T N++I+ Y  +G +++  K  +    +G+K +  T + L   Y +    +  
Sbjct: 507 -VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M+     P ++TYNI+++   +       +E + ++   G +    TY  ++  
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625

Query: 251 YSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
             K  L    D  L+  +N    D+ L+   FN +I A  + G  ++  +LF+       
Sbjct: 626 LCKNKL---TDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGL 682

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           VP+  T+  M +     G+ E    L+   ++M++N
Sbjct: 683 VPNYWTYRLMAENIIGQGLLE---ELDQLFLSMEDN 715



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 142/338 (42%), Gaps = 16/338 (4%)

Query: 11  EQASLLFEVMLSDGLKPSV-DVYTALVSAYGQSGLLDEAFSTINDMK--SVSDCKPDVYT 67
           E A  +F+ +L  G   S+  +  AL      S     A S  N M      +  PD+ T
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARDSPA--AAVSRYNRMARAGADEVTPDLCT 89

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAM 126
           Y ILI  C +  R DL    L  +   G    A+ +  ++ G    K+  + M+     M
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GVKADIQTLNILTKS 180
            E G C P++F+ N ++    +     + ++     ++M      G   D+ +   +   
Sbjct: 150 TELG-CIPNVFSYNILLKGLCDE---NRSQEALELLHMMADDRGGGSPPDVVSYTTVING 205

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + + G  DK  S    M  R   P VVTYN +I    KA  ++K  E    M   G+ P+
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 265

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY S++  Y  +G   +    L+++ +  V  D   ++ ++    + G   +  ++F 
Sbjct: 266 CMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFD 325

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +M +R   P+  T+ T++Q Y   G       L + M+
Sbjct: 326 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 160/319 (50%), Gaps = 4/319 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++  +A  +F  M + G+ P++  Y +L+          EA + +N+M S+ +  P
Sbjct: 272 LCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSL-NIMP 330

Query: 64  DVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           ++ T+S+LI   C + + F+    +L  M+ +G+E + VTY+++++GY    +  E    
Sbjct: 331 NIVTFSLLINIFCKEGNVFE-ARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKL 389

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M+ + GC PD+F+ N +I+ Y  +  I + ++ +NE    G+  DI + N L     
Sbjct: 390 FDVMI-TKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLC 448

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   +   +   M      P + TY+I+++ F K G++ K    F+ M+   +KPN +
Sbjct: 449 QLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMV 508

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y  L+ A  K+  + +   +  ++    +  +   +  II+   + G +++  E F  M
Sbjct: 509 MYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNM 568

Query: 303 KERHCVPDNITFATMIQAY 321
           +E  C P+  ++  +I+ +
Sbjct: 569 EEDGCPPNEFSYNVIIRGF 587



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 154/356 (43%), Gaps = 34/356 (9%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  ML    +P +  +  L+SA  +     +A  +++    ++   PD YT  +LI    
Sbjct: 109 FNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFF 168

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------ 130
           +  R DL   +LA++  LG++ + VT+NT+I+G  K  KF +    F  MV  G      
Sbjct: 169 QLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVH 228

Query: 131 ----------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
                                       GC PD+ T +++I +      + +    ++  
Sbjct: 229 TYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYM 288

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              G+  +I T N L +       + +  ++++ M      P +VT++++I  F K G++
Sbjct: 289 KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNV 348

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
            +     K M   G++PN +TY SL++ YS    +++   +   +       D   +N +
Sbjct: 349 FEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNIL 408

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           I+ Y +A  + +  +LF  M  +   PD +++ T+I     LG    A +L   M+
Sbjct: 409 INGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNML 464



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 159/336 (47%), Gaps = 8/336 (2%)

Query: 5   GKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E   A+ LF  M   G +P V  Y+ ++ +  +   ++EA    + MK+     
Sbjct: 236 GLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKA-KGIS 294

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+++TY+ LI+    F R+     +L EM  L I  + VT++ +I+ + K     E    
Sbjct: 295 PNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGV 354

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E G   P++ T +S+++ Y     + +  K ++     G K D+ + NIL   Y 
Sbjct: 355 LKTMTEMG-VEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYC 413

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A    + + + + M  +   P +V+YN +I+   + G + +  + FK M   G  P+  
Sbjct: 414 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLC 473

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+  + K G + K   + R ++++ +  +   +N +I A  ++ ++++  +LF  +
Sbjct: 474 TYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSEL 533

Query: 303 KERHCVPDNITFATMIQAYNALGM----TEAAQNLE 334
             +   P+   + T+I      G+     EA +N+E
Sbjct: 534 FVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNME 569



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 149/332 (44%), Gaps = 5/332 (1%)

Query: 9   QPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           Q ++  L F V+   +  GL+ ++  +  L++   + G   +A    +DM +    +PDV
Sbjct: 169 QLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVA-RGYQPDV 227

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           +TY+ +I    K         +  +M   G +   VTY+TIID   K ++  E    FS 
Sbjct: 228 HTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSY 287

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M ++ G  P+IFT NS+I    N     +     NE   + +  +I T ++L   + + G
Sbjct: 288 M-KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEG 346

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              + R V+  M +    P VVTY+ ++  +     + +  + F  M  +G KP+  +Y 
Sbjct: 347 NVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYN 406

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L++ Y KA  I +   +  ++ +  +  D   +N +I    Q G + +  +LF  M   
Sbjct: 407 ILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTN 466

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +PD  T++ ++  +   G    A  L   M
Sbjct: 467 GNLPDLCTYSILLDGFCKQGYLAKAFRLFRAM 498



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 99/240 (41%)

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           + +N ++    K + + +   S S  +E  G  PD +TL+ +I+ +     ++       
Sbjct: 122 IQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLA 181

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           +   +G++  I T N L     + G + +   + D M  R + P V TY  +I    K G
Sbjct: 182 KIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIG 241

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
                   F+KM   G +P+ +TY +++ +  K   + +   I   ++   +  +   +N
Sbjct: 242 ETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYN 301

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +I          +   +   M   + +P+ +TF+ +I  +   G    A+ +   M  M
Sbjct: 302 SLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEM 361



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 13/215 (6%)

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYN-------EFNLMGVKADIQTLNILTKSYGRAG 185
            P I   N ++SA      I KM  +++       +  L G+  D  TL++L   + +  
Sbjct: 118 RPCIIQFNKLLSA------IVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQ 171

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D   SV+  + K     T+VT+N +I    K G   +  E F  M  RG +P+  TY 
Sbjct: 172 RVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYT 231

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           ++++   K G  +    + R++  +    D   ++ II +  +   V +  ++F  MK +
Sbjct: 232 TIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAK 291

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
              P+  T+ ++IQ          A  + N+M+++
Sbjct: 292 GISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSL 326


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 153/332 (46%), Gaps = 15/332 (4%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L   +  +G+KP   +  A+++A+  SG +DEA      MK    CKP   TY+ LIK  
Sbjct: 117 LLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYG-CKPTTSTYNTLIKG- 174

Query: 76  TKFHRFDLIEKILAEMSYL-------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
                F ++ +    M  L        ++ +  TYN +I  +   KK EE  +    MV 
Sbjct: 175 -----FGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVA 229

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           SG   PD+ T N+M  AY  +G  EK E+   +     VK + +T  I+   Y + G   
Sbjct: 230 SG-IQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMT 288

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +    +  M++    P  V +N +I+ +  A     ++E    M+  G+KP+ +T+ +++
Sbjct: 289 EALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIM 348

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           +A+S AGL+   + I   +  + +  D   ++ +   Y +AG   K   L  +M +    
Sbjct: 349 NAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQ 408

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            + + F T+I  + A G  + A +L  KM  M
Sbjct: 409 TNVVIFTTIISGWCAAGKMDRAFSLCEKMHEM 440



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 158/333 (47%), Gaps = 3/333 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            G   +P ++  L E+M  D  +KP+   Y  L+ A+     L+EA++ ++ M + S  +
Sbjct: 175 FGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVA-SGIQ 233

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TY+ + ++  +    +  E+++ +M Y  ++ +  T   II GY K     E    
Sbjct: 234 PDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRF 293

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E G  HP+    NS+I  Y ++ +   +++        G+K D+ T + +  ++ 
Sbjct: 294 LYRMKELG-VHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWS 352

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            AG+ D    + + M K    P +  Y+I+ + + +AG   K E     M   G++ N +
Sbjct: 353 SAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVV 412

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            + +++S +  AG + +  S+  ++       +   +  +I  YG+A    K  E+  TM
Sbjct: 413 IFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTM 472

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
           +ER  VP+  T   +  A+ A+G+ + A  + N
Sbjct: 473 EERGVVPEMSTMQLVADAWRAIGLFKEANRILN 505



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 144/312 (46%), Gaps = 3/312 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F+ M   G KP+   Y  L+  +G  G   E+   +  M    + KP+  TY+I
Sbjct: 147 DEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNI 206

Query: 71  LIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           LI++ CTK  + +    +L +M   GI+   VTYNT+   Y +  + E+ E     M + 
Sbjct: 207 LIQAWCTK-KKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKM-QY 264

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
               P+  T   +IS Y   GN+ +  ++      +GV  +    N L K Y  A   + 
Sbjct: 265 NKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNG 324

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +   +  M++    P VVT++ ++  +  AG ++  EE F  M   G++P+   Y  L  
Sbjct: 325 VDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAK 384

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            Y +AG   K +S+L  +    V  +   F  IIS +  AG +++   L   M E    P
Sbjct: 385 GYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSP 444

Query: 310 DNITFATMIQAY 321
           +  T+ T+I  Y
Sbjct: 445 NLKTYETLIWGY 456



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 161/341 (47%), Gaps = 14/341 (4%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-VSD- 60
           ++GK K P +A  +F  +  +G KP++  YT LV+A  +     + F +I  + S V+D 
Sbjct: 70  LIGKGK-PHEAQAVFHNLTEEGHKPTLITYTTLVAALTR----QKRFKSIPALLSKVADN 124

Query: 61  -CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KPD    + +I + +   + D   KI  +M   G + +  TYNT+I G+G   +  E 
Sbjct: 125 GMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYES 184

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNI 176
                 M +     P+  T N +I A+      +K+E+ +N  + M   G++ D+ T N 
Sbjct: 185 MKLLEMMGQDENVKPNDRTYNILIQAWCTK---KKLEEAWNVLHKMVASGIQPDVVTYNT 241

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           + ++Y + G  +K   ++  MQ     P   T  I+I  + K G++ +   +  +MK  G
Sbjct: 242 MARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELG 301

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + PN + + SL+  Y  A     VD  L  +E   +  D   F+ I++A+  AG ++   
Sbjct: 302 VHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCE 361

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           E+F  M +    PD   ++ + + Y   G    A++L   M
Sbjct: 362 EIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSM 402



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 37/296 (12%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+ E+A  +   M++ G++P V  Y  +  AY Q+G  ++A   I  M+  +  KP+  T
Sbjct: 215 KKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQ-YNKVKPNERT 273

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
             I+I    K        + L  M  LG+  + V +N++I GY  A     ++ + + M 
Sbjct: 274 CGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLM- 332

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E  G  PD+ T +++++A+ ++G ++  E+ +N+    G++ DI   +IL K Y RAG  
Sbjct: 333 EEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQP 392

Query: 188 DKMRSVMDFMQK------------------------RFFF-----------PTVVTYNIV 212
            K  S++  M K                        R F            P + TY  +
Sbjct: 393 RKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETL 452

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           I  +G+A    K EE    M+ RG+ P   T   +  A+   GL  + + IL   E
Sbjct: 453 IWGYGEAKQPWKAEEILSTMEERGVVPEMSTMQLVADAWRAIGLFKEANRILNGSE 508



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 5/199 (2%)

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +++A    G   + +  ++     G K  + T   L  +  R   +  + +++  +    
Sbjct: 66  LMNALIGKGKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNG 125

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI---M 258
             P  +  N +I  F  +G +++  + F+KMK  G KP + TY +L+  +   G     M
Sbjct: 126 MKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESM 185

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           K+  ++ Q EN  V  +   +N +I A+     +E+   +   M      PD +T+ TM 
Sbjct: 186 KLLEMMGQDEN--VKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMA 243

Query: 319 QAYNALGMTEAAQNLENKM 337
           +AY   G TE A+ L  KM
Sbjct: 244 RAYAQNGETEKAERLILKM 262


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 149/318 (46%), Gaps = 3/318 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M S+ L+P V +Y   +  +G++G +D A+   ++MK+      DV TY+ +I   
Sbjct: 257 LLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDV-TYTSMIGVL 315

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R +   ++   M        A  YNT+I GYG A KFE+  S         GC P 
Sbjct: 316 CKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQ-RRKGCIPS 374

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + + N ++S  G  G +++  K + E     +  ++ T NI+     +AG  +    V D
Sbjct: 375 VVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRD 433

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+    FP V+T NI+++   KA  ++     F+ + H+  +P+++TYCSL+    + G
Sbjct: 434 AMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHG 493

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   +  Q+ +++ I +   +  +I  + + G  E   +++  M    C PD +   
Sbjct: 494 RVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLN 553

Query: 316 TMIQAYNALGMTEAAQNL 333
           T +      G  E  + L
Sbjct: 554 TYMDCVFKAGEIEKGRAL 571



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 3/325 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M   G   +V ++T L+  + + G +D A S +++MKS S  +PDV  Y++ I   
Sbjct: 222 LFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNS-LEPDVVLYNVCIDCF 280

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  + D+  K   EM   G+    VTY ++I    KA +  E    F  M ++    P 
Sbjct: 281 GKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV-PC 339

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            +  N+MI  YG +G  E            G    + + N +    GR G  D+     +
Sbjct: 340 AYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFE 399

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+K    P + TYNI+I+   KAG +E        MK  G+ PN IT   +V    KA 
Sbjct: 400 EMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQ 458

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +    SI   +++     D   +  +I   G+ G V++  +L+  M + + +P+ + + 
Sbjct: 459 RLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYT 518

Query: 316 TMIQAYNALGMTEAAQNLENKMIAM 340
           ++I+ +   G  E    + N+M+ +
Sbjct: 519 SLIRNFFKCGRKEDGHKIYNEMLRL 543



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 142/308 (46%), Gaps = 3/308 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  L E     G  PSV  Y  ++S  G+ G +DEA     +MK   D  P++ TY+I
Sbjct: 357 EDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKK--DAIPNLSTYNI 414

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    K  + +    +   M   G+  + +T N ++D   KA++ ++  S F  + +  
Sbjct: 415 MIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL-DHK 473

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C PD  T  S+I   G  G +++  K Y +        +      L +++ + G  +  
Sbjct: 474 TCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDG 533

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + + M +    P ++  N  ++   KAG IEK    F+++K+ G  P++ +Y  L+  
Sbjct: 534 HKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHG 593

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             KAG   +   +   ++    +LDT  +N +I  + ++G V K  +L   MK +   P 
Sbjct: 594 LVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPT 653

Query: 311 NITFATMI 318
            +T+ ++I
Sbjct: 654 VVTYGSVI 661



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 159/353 (45%), Gaps = 37/353 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           ML K  + E A ++ + M   GL P+V     +V    ++  LD+A S    +   + C+
Sbjct: 418 MLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKT-CR 476

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI+   +  R D   K+  +M       +AV Y ++I  + K  + E+    
Sbjct: 477 PDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKI 536

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL----- 177
           ++ M+  G C PD+  LN+ +     +G IEK    + E   +G   D ++  IL     
Sbjct: 537 YNEMLRLG-CSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLV 595

Query: 178 -----------------------TKSYG-------RAGMYDKMRSVMDFMQKRFFFPTVV 207
                                  T++Y        ++G  +K   +++ M+ +   PTVV
Sbjct: 596 KAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVV 655

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  VI+   K   +++    F++ K +G++ N + Y SL+  + K G I +   I+ ++
Sbjct: 656 TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL 715

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
               +  +   +NC++ A  +A ++ +    F +MK+  C P+ IT++ +I  
Sbjct: 716 MQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHG 768



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 134/302 (44%), Gaps = 2/302 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + E+   LF+ + + G  P    YT L+    ++G   EA+     MK    C  D 
Sbjct: 561 KAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKE-QGCVLDT 619

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             Y+ +I    K  + +   ++L EM   G E + VTY ++IDG  K  + +E    F  
Sbjct: 620 RAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 679

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
             +S G   ++   +S+I  +G  G I++      E    G+  ++ T N L  +  +A 
Sbjct: 680 -AKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 738

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              +       M+     P  +TY+I+I    K     K   ++++M+ +G KPN  TY 
Sbjct: 739 EISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYT 798

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +++S  +KAG I++ D++  + +    + D+  +N II     A        LF   + +
Sbjct: 799 TMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLK 858

Query: 306 HC 307
            C
Sbjct: 859 GC 860



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 118/264 (44%), Gaps = 1/264 (0%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y+ L+    +  +F+ +E+IL EMS  G   S  T   I+  + K++K  E   +F   
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREA-FTFIQT 190

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           +      P      ++I A   S + + M   + +   +G   ++     L + + R G 
Sbjct: 191 MRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGR 250

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D   S++D M+     P VV YN+ I+ FGKAG ++   + F +MK  G+  + +TY S
Sbjct: 251 VDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTS 310

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++    KA  + +   +   ++ +  +     +N +I  YG AG  E    L    + + 
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG 370

Query: 307 CVPDNITFATMIQAYNALGMTEAA 330
           C+P  +++  ++      G  + A
Sbjct: 371 CIPSVVSYNCILSCLGRKGQVDEA 394



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 146/327 (44%), Gaps = 3/327 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  Q ++A   FE M  D + P++  Y  ++    ++G L+ A    + MK  +   P
Sbjct: 385 LGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKD-AGLFP 442

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V T +I++    K  R D    I   + +      AVTY ++I+G G+  + +E    +
Sbjct: 443 NVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLY 502

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+++    P+     S+I  +   G  E   K YNE   +G   D+  LN       +
Sbjct: 503 EQMLDANQI-PNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFK 561

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  +K R++   ++   F P   +Y I+I    KAG   +  E F  MK +G   ++  
Sbjct: 562 AGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRA 621

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +++  + K+G + K   +L +++          +  +I    +   +++   LF   K
Sbjct: 622 YNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 681

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAA 330
            +    + + ++++I  +  +G  + A
Sbjct: 682 SKGIELNVVIYSSLIDGFGKVGRIDEA 708



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 136/315 (43%), Gaps = 2/315 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC + E    ++  ML  G  P + +    +    ++G +++  +   ++K++    PD 
Sbjct: 526 KCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFI-PDA 584

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            +Y+ILI    K        ++   M   G       YNT+IDG+ K+ K  +       
Sbjct: 585 RSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE 644

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M ++ G  P + T  S+I        +++    + E    G++ ++   + L   +G+ G
Sbjct: 645 M-KTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVG 703

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D+   +M+ + ++   P V T+N +++   KA  I +    F+ MK     PN ITY 
Sbjct: 704 RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYS 763

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+    K     K     ++++      +   +  +IS   +AG++ +   LF   KE+
Sbjct: 764 ILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEK 823

Query: 306 HCVPDNITFATMIQA 320
             V D+  +  +I+ 
Sbjct: 824 GGVADSAIYNAIIEG 838



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 119/268 (44%), Gaps = 44/268 (16%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + ++A +LFE   S G++ +V +Y++L+  +G+ G +DEA+  + ++       P
Sbjct: 664 LAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQ-KGLTP 722

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEMES 121
           +VYT++ L+ +  K    ++ E ++   S   ++C+   +TY+ +I G  K +KF +   
Sbjct: 723 NVYTWNCLLDALVKAE--EISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFV 780

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +  M +  G  P++FT  +MIS    +GNI + +  + +F   G  AD           
Sbjct: 781 FWQEM-QKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVAD----------- 828

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
                                      YN +IE    A         F++ + +G    +
Sbjct: 829 ------------------------SAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYT 864

Query: 242 ITYCSLVSAYSKAGLIMK---VDSILRQ 266
            T   L+ +  KA  I +   V ++LR+
Sbjct: 865 KTCVVLLDSLHKAECIEQAAIVGAVLRE 892


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 160/337 (47%), Gaps = 4/337 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK     +A  L+  M + G+ P    YT L+  +   G L  AFS +++M  + +  
Sbjct: 159 GLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEM-ILKNIN 217

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P VY Y+ILI +  K       + +LA M+  GI+   VTY+T++DGY    + +  +  
Sbjct: 218 PGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQI 277

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F AMV+ G  +P++++ N MI+       +++      E     +  D  T N L     
Sbjct: 278 FHAMVQMG-VNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLC 336

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G      ++M+ M  R     VVTY  +++   K  +++K    F KMK RG++P   
Sbjct: 337 KSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMY 396

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+    K G +     + + +      +D   +  +IS   + G  ++   +   M
Sbjct: 397 TYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKM 456

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           ++  C+P+ +TF  +I++       + A+ L ++MIA
Sbjct: 457 EDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIA 493



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 147/335 (43%), Gaps = 4/335 (1%)

Query: 5   GKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E   A  L  ++     +P+V +Y  ++    +  L++EA+   ++M +     
Sbjct: 124 GLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDA-RGIF 182

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY+ LI       +      +L EM    I      YN +I+   K    +E ++ 
Sbjct: 183 PDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNL 242

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M + G   P + T ++++  Y   G ++  ++ ++    MGV  ++ + NI+     
Sbjct: 243 LAVMTKEG-IKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLC 301

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    D+  +++  M  +   P  VTYN +I+   K+G I        +M HRG   + +
Sbjct: 302 KCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVV 361

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+ A  K   + K  ++  +++   +      +  +I    + G ++   ELF  +
Sbjct: 362 TYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL 421

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             + C  D  T+  MI      GM + A  +++KM
Sbjct: 422 LVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKM 456



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 149/336 (44%), Gaps = 8/336 (2%)

Query: 2   VMLGKCKQPE-QASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C + E + SL F + +++ G +     Y  L++   + G   E    +  ++ + 
Sbjct: 86  LMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIG---ETRCAVKLLRMIE 142

Query: 60  D--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           D   +P+V  Y+ +I    K    +    + +EM   GI   A+TY T+I G+    +  
Sbjct: 143 DRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLM 202

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
              S    M+     +P ++  N +I+A    GN+++ +         G+K  + T + L
Sbjct: 203 GAFSLLDEMILKN-INPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTL 261

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              Y   G     + +   M +    P V +YNI+I    K   +++     ++M H+ M
Sbjct: 262 MDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNM 321

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P+++TY SL+    K+G I    +++ ++ +     D   +  ++ A  +  +++K   
Sbjct: 322 VPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATA 381

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           LF+ MKER   P   T+  +I      G  + AQ L
Sbjct: 382 LFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQEL 417



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 145/343 (42%), Gaps = 20/343 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K KQ   A  L + M   G++ +      L++ +   G +  +FS +  +  +   +P
Sbjct: 20  LAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKILKLGY-QP 78

Query: 64  DVYTYSILIKS-CTK--------FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           D  T + L+K  C K        FH     +K++A+    G +   V+Y T+++G  K  
Sbjct: 79  DTITLNTLMKGLCLKGEVKKSLHFH-----DKVVAQ----GFQMDHVSYGTLLNGLCKIG 129

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           +          M+E     P++   N++I        + +    Y+E +  G+  D  T 
Sbjct: 130 E-TRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITY 188

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
             L   +   G      S++D M  +   P V  YNI+I    K G++++ +     M  
Sbjct: 189 TTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTK 248

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+KP  +TY +L+  Y   G +     I   +    V  +   +N +I+   +   V++
Sbjct: 249 EGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDE 308

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              L   M  ++ VPD +T+ ++I      G   +A NL N+M
Sbjct: 309 AMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEM 351



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 132/283 (46%), Gaps = 5/283 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  ++ ++ S  K  ++     +  +M   GI  + VT N +I+ +       +M  S
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCH---LGQMAFS 64

Query: 123 FSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           FS +  +   G  PD  TLN+++      G ++K   ++++    G + D  +   L   
Sbjct: 65  FSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNG 124

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             + G       ++  ++ R   P VV YN +I+   K   + +  + + +M  RG+ P+
Sbjct: 125 LCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPD 184

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           +ITY +L+  +   G +M   S+L ++   ++      +N +I+A  + G+V++   L  
Sbjct: 185 AITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLA 244

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
            M +    P  +T++T++  Y  +G  + A+ + + M+ M  N
Sbjct: 245 VMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVN 287



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 105/229 (45%), Gaps = 2/229 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + + A  +F  M+  G+ P+V  Y  +++   +   +DEA + + +M    +  PD  TY
Sbjct: 270 EVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLH-KNMVPDTVTY 328

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + LI    K  R      ++ EM + G     VTY +++D   K +  ++  + F  M E
Sbjct: 329 NSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKE 388

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G   P ++T  ++I      G ++  ++ +    + G   D+ T  ++     + GM+D
Sbjct: 389 RG-IQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFD 447

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
           +  ++   M+     P  VT+ I+I +  +    +K E+   +M  +G+
Sbjct: 448 EALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 496



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 12/218 (5%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNL------MGVKADIQTLNILTKSYGRAGMY 187
           P I   N ++      G++ KM+++    +L       G++A+  TLNIL   +   G  
Sbjct: 8   PPIIEFNKIL------GSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQM 61

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
               SV+  + K  + P  +T N +++     G ++K   +  K+  +G + + ++Y +L
Sbjct: 62  AFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTL 121

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++   K G       +LR +E+     +   +N II    +   V +  +L+  M  R  
Sbjct: 122 LNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            PD IT+ T+I  +  LG    A +L ++MI    N G
Sbjct: 182 FPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPG 219


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 164/370 (44%), Gaps = 37/370 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + +Q   A  LF+ ++S GL+P V VYTA+V +  +      A   I  M+S S C  
Sbjct: 190 LIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMES-SGCDL 248

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V TY++ I+   K  R     +I   +SY G+     TY T++ G  K ++FE  E   
Sbjct: 249 SVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMM 308

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M+E G   P    +++++      GNI       N+    GV   +   N L  S  +
Sbjct: 309 NEMIEFGFV-PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCK 367

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE-------KMEE--------- 227
            G  D+  S+ + M  +  FP  VTY+I+I++F K G ++       KM E         
Sbjct: 368 DGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYP 427

Query: 228 -------------------YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
                               F +M   G+KPN + Y SL+S Y K G +     +  ++ 
Sbjct: 428 YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMT 487

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              +  +T  F  +IS    A  + +  +LF  M E + +P+ +T+  +I+ +   G T 
Sbjct: 488 GKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTV 547

Query: 329 AAQNLENKMI 338
            A  L ++M+
Sbjct: 548 RAFELLDEMV 557



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 144/316 (45%), Gaps = 29/316 (9%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G+ PS+ VY AL+++  + G LDEA S  N+M       P+  TYSILI S  K  + D+
Sbjct: 350 GVAPSLFVYNALINSMCKDGKLDEAESLFNNMGH-KGLFPNDVTYSILIDSFCKRGKLDV 408

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
               L +M+ +GI+ +   Y+++I G+ K  K    +S F  M+ + G  P++    S+I
Sbjct: 409 ALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMI-ANGLKPNVVIYTSLI 467

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           S Y   G +    + Y+E    G+  +  T   L      A    +   +   M +    
Sbjct: 468 SGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVI 527

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P  VTYN++IE   K G+  +  E   +M  +G+ P++ TY  L+S     G + +    
Sbjct: 528 PNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREF 587

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           +  ++                     G+ +K+ E+        C+P+ +T+  +I     
Sbjct: 588 MNDLQ---------------------GEQQKLNEI------EGCLPNVVTYTALINGLCK 620

Query: 324 LGMTEAAQNLENKMIA 339
           +G+ + A+ L  +M+A
Sbjct: 621 IGLMDKAELLCREMLA 636



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 157/346 (45%), Gaps = 17/346 (4%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 60
           G CK  +   A  LF+ M+++GLKP+V +YT+L+S Y + G L  AF   ++M  K +S 
Sbjct: 434 GHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGIS- 492

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+ YT++ LI      +R     K+  EM    +  + VTYN +I+G+ K        
Sbjct: 493 --PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAF 550

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN--------LMGVKADIQ 172
                MVE G   PD +T   +IS   ++G + +  ++ N+          + G   ++ 
Sbjct: 551 ELLDEMVEKG-LVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVV 609

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T   L     + G+ DK   +   M      P   TY   ++     G+IEK  +    +
Sbjct: 610 TYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQ-LHDV 668

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
              G   N++TY  L+  + K G I +   +L  + +S +  D   ++ II  Y + GD+
Sbjct: 669 LLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDL 728

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++  +L+ +M  R   PD + +  +I      G    A  L + M+
Sbjct: 729 KEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMM 774


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 166/352 (47%), Gaps = 45/352 (12%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--KPDV 65
           + PE  +L  E  L+  +KP    Y AL+  Y + G L  A   +++M   S+C   PD 
Sbjct: 283 RVPEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEHVLDEM---SECGVAPDE 339

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TYS+L+ + T+  R++    +L EM   G++ S+  ++ I+ G+   +   + + +F+ 
Sbjct: 340 ATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGF---RDRGDWQKAFAV 396

Query: 126 MVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + E  + G  PD    N MI  +G    +      +N     G++ D+ T N L  ++ +
Sbjct: 397 LREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCK 456

Query: 184 AGMYD-------KMR----------------------------SVMDFMQKRFFFPTVVT 208
            G +D       +MR                            ++M  M+++   P ++T
Sbjct: 457 GGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIIT 516

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y  +++ +G++G  ++  +  + MK  G+KP+   Y +LV+AY++ GL     ++++ + 
Sbjct: 517 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR 576

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
              +   T   N +I+A+G+   V +   +   MKE    PD IT+ T+++A
Sbjct: 577 ADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKA 628



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 151/335 (45%), Gaps = 1/335 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            +   P+ A  L     + GL P  +  TAL+SA G +G + EA +   +     + KP 
Sbjct: 244 ARAALPDAALELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPR 303

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+ L+K   K       E +L EMS  G+     TY+ ++D Y +A ++E       
Sbjct: 304 TRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLK 363

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+ G  P  +  + +++ + + G+ +K      E +  GV+ D    N++  ++G+ 
Sbjct: 364 EM-EADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKY 422

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
                   V + M+     P VVT+N +I+   K G  +   E FK+M+     P + TY
Sbjct: 423 NCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTY 482

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +++   +    + V++++ +++   ++ +   +  ++  YG++G  ++  +    MK 
Sbjct: 483 NIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKA 542

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
               P    +  ++ AY   G+ + A N+   M A
Sbjct: 543 DGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRA 577



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 154/324 (47%), Gaps = 10/324 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M + S  +PD + Y++
Sbjct: 356 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHA-SGVQPDRHFYNV 414

Query: 71  LIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +I +  K+    H  D+  ++  E    GIE   VT+NT+ID + K  + +     F  M
Sbjct: 415 MIDTFGKYNCLGHAMDVFNRMRGE----GIEPDVVTWNTLIDAHCKGGRHDCAMELFKEM 470

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            ES  C P   T N MI+  G       +E   +E    G+  +I T   L   YGR+G 
Sbjct: 471 RESN-CPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGR 529

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y +    ++ M+     P+   Y+ ++  + + G  +      K M+  G++ +++   S
Sbjct: 530 YKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNS 589

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++A+ +   +++  S+L+ ++ +D   D   +  ++ A  +    +K+  ++  M    
Sbjct: 590 LINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSG 649

Query: 307 CVPDNITFATMIQAYNALGMTEAA 330
           C PD    A +  A   +  T  A
Sbjct: 650 CAPDRKARAMLRSALRYMKHTRVA 673



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 136/320 (42%), Gaps = 43/320 (13%)

Query: 63  PDVYTYSILIKSCTKFHRFD---LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           PD+ +YS L+ S           ++E++L ++    +E  A  ++ +I  + +A    + 
Sbjct: 193 PDLASYSHLLASLLNTRDPPDAAILERLLGDLRDSRLEPDAPLFSDLISAFARAA-LPDA 251

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILT 178
                A  ++ G  P    + ++ISA G +G + + E  + EF L G +K   +  N L 
Sbjct: 252 ALELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALL 311

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           K Y + G       V+D M +    P   TY+++++ + +AG  E      K+M+  G+K
Sbjct: 312 KGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVK 371

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ---------- 288
           P+S  +  +++ +   G   K  ++LR++  S V  D  F+N +I  +G+          
Sbjct: 372 PSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDV 431

Query: 289 -------------------------AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
                                     G  +   ELF  M+E +C P   T+  MI   N 
Sbjct: 432 FNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMI---NL 488

Query: 324 LGMTEAAQNLENKMIAMKEN 343
           LG  E    +E  M  MKE 
Sbjct: 489 LGEQERWVGVETMMSEMKEQ 508


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 146/313 (46%), Gaps = 5/313 (1%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P V  Y A+V+ Y  +G LD A   +  M      +PD YTY+ LI+      R D   
Sbjct: 117 EPDVMSYNAMVAGYCVTGQLDNARRLVAAMPM----EPDTYTYNTLIRGLCGRGRTDNAL 172

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +L +M   G     VTY  +++   K   +++       M + G C PDI T N +++ 
Sbjct: 173 AVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKG-CAPDIVTYNVVVNG 231

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
               G ++   ++       G + +  + NI+ K    A  ++    +M  M ++   P 
Sbjct: 232 ICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPN 291

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           VVT+N++I    + G +E   E   ++   G  PNS++Y  ++ A+ K   + +  + + 
Sbjct: 292 VVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVE 351

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            + +S    D   +N +++A  + G+V+   EL   +K++ C P  I++ T+I      G
Sbjct: 352 LMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAG 411

Query: 326 MTEAAQNLENKMI 338
            TE A  L N+M+
Sbjct: 412 KTEEALELLNEMV 424



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 152/329 (46%), Gaps = 4/329 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   +QA  L + M   G  P +  Y  +V+   Q G +D+A   +  + S   C+P+
Sbjct: 198 CKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYG-CEPN 256

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +Y+I++K      R++  EK++AEMS  G   + VT+N +I    + +   E      
Sbjct: 257 TVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCR-RGLVEPAMEIL 315

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +   GC P+  + N ++ A+     +++   +       G   DI + N L  +  R 
Sbjct: 316 DQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRG 375

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D    ++  ++ +   P +++YN VI+   KAG  E+  E   +M  +G++P+ ITY
Sbjct: 376 GEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITY 435

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            ++ S   + G I +      +V++  +  +T  +N I+    +        +LF  M  
Sbjct: 436 STISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVS 495

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNL 333
             C+P+  T+  +I+     G+ + A+ +
Sbjct: 496 NGCMPNESTYTILIEGLAYEGLVKEAREM 524



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 151/329 (45%), Gaps = 2/329 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  + + ML  G  P V  YT L+ A  +     +A   +++M+    C PD+ TY++
Sbjct: 169 DNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRD-KGCAPDIVTYNV 227

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    +  R D   + L  +   G E + V+YN ++ G   A+++E+ E   + M   G
Sbjct: 228 VVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKG 287

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T N +IS     G +E   +  ++    G   +  + N +  ++ +    D+ 
Sbjct: 288 R-PPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRA 346

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            + ++ M     +P +V+YN ++    + G ++   E   ++K +G  P  I+Y +++  
Sbjct: 347 MAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDG 406

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            +KAG   +   +L ++    +  D   ++ I S   + G +E+  + F  +++    P+
Sbjct: 407 LTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPN 466

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
            + +  ++        T +A +L   M++
Sbjct: 467 TVLYNAILLGLCKRRATHSAIDLFTYMVS 495



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 109/260 (41%), Gaps = 8/260 (3%)

Query: 78  FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
             R DL E I    S  G+E SA      +      KK      +  A      C PD+ 
Sbjct: 67  VRRGDLEEAIRLVESMAGLEPSAAGPCAAL-----IKKLCASGRTAEARRVLASCEPDVM 121

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           + N+M++ Y  +G ++   +       M ++ D  T N L +     G  D   +V+D M
Sbjct: 122 SYNAMVAGYCVTGQLDNARRL---VAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDM 178

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
            +R   P VVTY I++E   K    ++  +   +M+ +G  P+ +TY  +V+   + G +
Sbjct: 179 LRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRV 238

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
                 L+ + +     +T  +N ++     A   E   +L   M  +   P+ +TF  +
Sbjct: 239 DDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNML 298

Query: 318 IQAYNALGMTEAAQNLENKM 337
           I      G+ E A  + +++
Sbjct: 299 ISFLCRRGLVEPAMEILDQI 318


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 2/314 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P+   Y  +++ +   G +  A   + +M+      P+ YTY  +I    K  R D   
Sbjct: 511 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 570

Query: 86  KILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           K+  EM   G ++  AV YN +I GY    K +        MVE G     + T N ++ 
Sbjct: 571 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM-TVATYNLLVH 629

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A    G   +  +   E    G+  D+ T NIL   + + G   K   + + M +R    
Sbjct: 630 ALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 689

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           TVVTY  +I    K G +++ ++ F +   RG++P+ + Y +L++++S +G I +   I+
Sbjct: 690 TVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIM 749

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++E   +  D   +N ++      G V++  +L   M ER   PD +T+ T+I  Y+  
Sbjct: 750 GEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMK 809

Query: 325 GMTEAAQNLENKMI 338
           G  + A  + N+M+
Sbjct: 810 GDVKDALRIRNEMM 823



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 159/347 (45%), Gaps = 15/347 (4%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V+ G CK  + ++A  +F+ ML+ G +KP   +Y AL+  Y   G LD A     D    
Sbjct: 556 VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL-LYRDRMVE 614

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
                 V TY++L+ +     R     +++ EM   G+     TYN +I+G+ K    ++
Sbjct: 615 RGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKK 674

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  M   G     + T  ++I A    G +++ +K ++E    G++ D+   N L 
Sbjct: 675 ALEIFENMSRRG-VRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI 733

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            S+  +G  D+   +M  M+K+   P  VTYN ++      G +++  +   +M  RG++
Sbjct: 734 NSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQ 793

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY---GQAGDVEKM 295
           P+ +TY +L+S YS  G +     I  ++ N         +N +I      GQ  D E M
Sbjct: 794 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 853

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
                 M E    PD+ T+ ++I+       TE  + ++++ +A  +
Sbjct: 854 ---VKEMVENGITPDDSTYISLIEGLT----TEDERAIDDERLAAAD 893


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 164/381 (43%), Gaps = 48/381 (12%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK K   +A  +F  +     KP+ + Y +++    Q G  ++     N+M +  DC 
Sbjct: 168 VLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCL 227

Query: 63  PDVYTYSILIKSCTKFHRFD--------------------------------LIEKILA- 89
           PD  TYS LI +  K  R D                                 +EK L  
Sbjct: 228 PDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGL 287

Query: 90  --EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             EM   G   +  TY  +I G GKA K EE  S F  M++  GC PD+  +N++I+  G
Sbjct: 288 VQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKE-GCKPDVVLINNLINLLG 346

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF-----MQKRFF 202
            +G +    K + E   +    ++ T N + K    A    K R+   F     M++   
Sbjct: 347 KAGRLADAIKLFEEMESLQCTPNVVTYNTVIK----ALFESKARASEAFLWYEKMKENGV 402

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P+  TY+I+I+ F K   +EK     ++M  +G  P    YCSL++A  KA      + 
Sbjct: 403 VPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANE 462

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           + +++  +        +  +I   G+ G + +  +LF  MK+  C PD   +  ++    
Sbjct: 463 LFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMV 522

Query: 323 ALGMTEAAQNLENKMIAMKEN 343
            +GMT+ A +L   +  M+EN
Sbjct: 523 RVGMTDEAHSL---LRTMEEN 540



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 159/369 (43%), Gaps = 38/369 (10%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  + + A  LF+ M  +GL P+  +YT ++  Y + G +++A   + +MK    C   
Sbjct: 241 GKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKE-KGCALT 299

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VYTY+ LIK   K  + +    I   M   G +   V  N +I+  GKA +  +    F 
Sbjct: 300 VYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFE 359

Query: 125 AMVESGGCHPDIFTLNSMISA-YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            M ES  C P++ T N++I A + +     +   WY +    GV     T +IL   + +
Sbjct: 360 EM-ESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCK 418

Query: 184 AGMYDKMRSVMDFMQKRFFFP-----------------------------------TVVT 208
               +K   +++ M ++ F P                                   +   
Sbjct: 419 TNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARV 478

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y ++I+  GK G + +  + F +MK  G  P+   Y +L+S   + G+  +  S+LR +E
Sbjct: 479 YAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTME 538

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
            +    D    N I++ + + G  +   E+F  MK     PD +++ T++   +  GM E
Sbjct: 539 ENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFE 598

Query: 329 AAQNLENKM 337
            A  L  +M
Sbjct: 599 EAAKLMKEM 607



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 144/321 (44%), Gaps = 38/321 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           +GK  + E+A  +F  ML +G KP V +   L++  G++G L +A     +M+S+  C P
Sbjct: 310 VGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ-CTP 368

Query: 64  DV------------------------------------YTYSILIKSCTKFHRFDLIEKI 87
           +V                                    +TYSILI    K +R +    +
Sbjct: 369 NVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLL 428

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
           L EM   G       Y ++I+  GKAK++E     F  + E+ G +        MI   G
Sbjct: 429 LEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCG-YSSARVYAVMIKHLG 487

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G + +    +NE   +G   D+   N L     R GM D+  S++  M++    P + 
Sbjct: 488 KCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLN 547

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           ++NI++  F + G  +   E F +MK+  +KP+ ++Y +++   S+AG+  +   +++++
Sbjct: 548 SHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEM 607

Query: 268 ENSDVILDTPFFNCIISAYGQ 288
            +     D   ++ I+ A G+
Sbjct: 608 NSKGFEYDLITYSSILEAVGK 628



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 138/309 (44%), Gaps = 6/309 (1%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y AL+    ++G+L E + TI +M   S C       S ++K   K    +    I  ++
Sbjct: 127 YMALIHCLDEAGMLGEMWKTIQEMVR-STCVIGPADLSEIVKVLGKAKMVNKALSIFYQI 185

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
                + ++ TYN++I    +    E++   ++ M   G C PD  T +++I+A+G  G 
Sbjct: 186 KGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGR 245

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            +     ++E    G+    +    +   Y + G  +K   ++  M+++    TV TY  
Sbjct: 246 DDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTE 305

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+  GKAG +E+    F  M   G KP+ +   +L++   KAG +     +  ++E+  
Sbjct: 306 LIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ 365

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFL---TMKERHCVPDNITFATMIQAYNALGMTE 328
              +   +N +I A  ++    +  E FL    MKE   VP + T++ +I  +      E
Sbjct: 366 CTPNVVTYNTVIKALFESK--ARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVE 423

Query: 329 AAQNLENKM 337
            A  L  +M
Sbjct: 424 KALLLLEEM 432



 Score = 44.7 bits (104), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V + +V E       I    ++FK   K R  + +S TY +L+    +AG++ ++   ++
Sbjct: 89  VDHRLVREVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQ 148

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++  S  ++     + I+   G+A  V K   +F  +K R C P + T+ +MI      G
Sbjct: 149 EMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEG 208

Query: 326 MTEAAQNLENKM 337
             E    L N+M
Sbjct: 209 HHEKVHELYNEM 220


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 159/336 (47%), Gaps = 9/336 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
            G   +P ++  L E+M  D  +KP+   Y  L+ A+     L+EA++ ++ M + S  +
Sbjct: 137 FGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVA-SGIQ 195

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TY+ + ++  +    +  E+++ +M Y  ++ +  T   II GY K     E    
Sbjct: 196 PDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRF 255

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E G   P+    NS+I  Y ++ +   +++        G+K D+ T + +  ++ 
Sbjct: 256 LYRMKELG-VDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWS 314

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            AG+ +    + + M K    P +  Y+I+ + + +AG   K E     M   G++PN +
Sbjct: 315 SAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVV 374

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGELF 299
            + +++S +  AG   K+D   R  E    +  +P    +  +I  YG+A    K  EL 
Sbjct: 375 IFTTIISGWCAAG---KMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELL 431

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
            TM+ER  VP+  T   +  A+ A+G+ + A  + N
Sbjct: 432 TTMEERGVVPEMSTMQLVADAWRAIGLFKEANRILN 467



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 160/341 (46%), Gaps = 9/341 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + K+ +    L   +  +G+KP   +  A+++A+ +SG +DEA      MK    CKP
Sbjct: 67  LTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYG-CKP 125

Query: 64  DVYTYSILIK----SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              TY+ LIK    +   +    L+E +  + +   ++ +  TYN +I  +   KK EE 
Sbjct: 126 TTSTYNTLIKGFGIAGRPYESMKLLEMMGQDEN---VKPNDRTYNILIQAWCTKKKLEEA 182

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            +    MV SG   PD+ T N+M  AY  +G  E+ E+   +     VK + +T  I+  
Sbjct: 183 WNVLHKMVASG-IQPDVVTYNTMARAYAQNGETERAERLILKMPYNIVKPNERTCGIIIS 241

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y + G   +    +  M++    P  V +N +I+ +        ++E    M+  G+KP
Sbjct: 242 GYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKP 301

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +T+ ++++A+S AGL+   + I   +  + +  D   ++ +   Y +AG   K   L 
Sbjct: 302 DVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALL 361

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +M +    P+ + F T+I  + A G  + A  L  KM  M
Sbjct: 362 TSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEM 402



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 146/328 (44%), Gaps = 3/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F+ M   G KP+   Y  L+  +G +G   E+   +  M    + KP+  TY+I
Sbjct: 109 DEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNI 168

Query: 71  LIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           LI++ CTK  + +    +L +M   GI+   VTYNT+   Y +  + E  E     M   
Sbjct: 169 LIQAWCTK-KKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKM-PY 226

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
               P+  T   +IS Y   GN+ +  ++      +GV  +    N L K Y      + 
Sbjct: 227 NIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNG 286

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +   +  M++    P VVT++ ++  +  AG +E  EE F  M   G++P+   Y  L  
Sbjct: 287 VDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAK 346

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            Y +AG   K +++L  +    V  +   F  IIS +  AG +++   L   M E    P
Sbjct: 347 GYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSP 406

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
           +  T+ T+I  Y        A+ L   M
Sbjct: 407 NLKTYETLIWGYGEAKQPWKAEELLTTM 434



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 160/341 (46%), Gaps = 14/341 (4%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-VSD- 60
           ++GK K P +A  +F  +  +G KP++  YT LV+A  +     + F +I  + S V+D 
Sbjct: 32  LIGKGK-PHEAQAVFNNLTEEGHKPTLITYTTLVAALTR----QKRFKSIPALLSKVADN 86

Query: 61  -CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KPD    + +I + ++  + D   KI  +M   G + +  TYNT+I G+G A +  E 
Sbjct: 87  GMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYES 146

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNI 176
                 M +     P+  T N +I A+      +K+E+ +N  + M   G++ D+ T N 
Sbjct: 147 MKLLEMMGQDENVKPNDRTYNILIQAWCTK---KKLEEAWNVLHKMVASGIQPDVVTYNT 203

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           + ++Y + G  ++   ++  M      P   T  I+I  + K G++ +   +  +MK  G
Sbjct: 204 MARAYAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELG 263

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + PN + + SL+  Y        VD  L  +E   +  D   F+ I++A+  AG +E   
Sbjct: 264 VDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCE 323

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           E+F  M +    PD   ++ + + Y   G    A+ L   M
Sbjct: 324 EIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSM 364



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 37/296 (12%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+ E+A  +   M++ G++P V  Y  +  AY Q+G  + A   I  M   +  KP+  T
Sbjct: 177 KKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKM-PYNIVKPNERT 235

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
             I+I    K        + L  M  LG++ + V +N++I GY        ++ + + M 
Sbjct: 236 CGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLM- 294

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E  G  PD+ T +++++A+ ++G +E  E+ +N+    G++ DI   +IL K Y RAG  
Sbjct: 295 EEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQP 354

Query: 188 DKMRSVMDFMQKRFFFPTVV-----------------------------------TYNIV 212
            K  +++  M K    P VV                                   TY  +
Sbjct: 355 RKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSPNLKTYETL 414

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           I  +G+A    K EE    M+ RG+ P   T   +  A+   GL  + + IL   E
Sbjct: 415 IWGYGEAKQPWKAEELLTTMEERGVVPEMSTMQLVADAWRAIGLFKEANRILNGSE 470



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 62/121 (51%)

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           TV     ++ T    G   + +  F  +   G KP  ITY +LV+A ++      + ++L
Sbjct: 21  TVHARTKLMNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALL 80

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            +V ++ +  D+   N +I+A+ ++G V++  ++F  MKE  C P   T+ T+I+ +   
Sbjct: 81  SKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIA 140

Query: 325 G 325
           G
Sbjct: 141 G 141


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 141/317 (44%), Gaps = 38/317 (11%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           P+QA  +F+  L  GL+PS+ VY  L+    Q GL+  A   +N+M     CKPD++T  
Sbjct: 451 PDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAE-KGCKPDIWT-- 507

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
                                            YN II+G  K     +        + +
Sbjct: 508 ---------------------------------YNLIINGLCKMGCLSDANHLIGDAI-T 533

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            GC PDIFT N+++  Y     ++   +  N     G+  D+ T N L     +    ++
Sbjct: 534 KGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEE 593

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +  +   M ++   P ++TYN +IE+   +  + +  +   +MK +G+ P+ +++ +L++
Sbjct: 594 VMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLIT 653

Query: 250 AYSKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
            + K G +     + R +E   DV   T  +N IISA+ +  +++    LF  MK+  C 
Sbjct: 654 GFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCD 713

Query: 309 PDNITFATMIQAYNALG 325
           PDN T+  +I  +   G
Sbjct: 714 PDNYTYRVLIDGFCKTG 730



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 155/337 (45%), Gaps = 2/337 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M   G+  + ++A   FE M      PSV  Y A+++   + G  ++A      MK    
Sbjct: 162 MRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKD-KK 220

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            + DVYTY+I IKS  +  R     ++L  M  LG   +AV Y T++ G+ +    +   
Sbjct: 221 VESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRAR 280

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M+E   C PD+ T N ++ A    G + + E+ +++    GV  ++ T NI  + 
Sbjct: 281 ELFDEMLECCLC-PDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQG 339

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             + G  D+   ++  + +    P VVTYN VI    +   + + EE   KM + G +PN
Sbjct: 340 LCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPN 399

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY S++  Y K G+++  + IL+         D   +  +++ + Q GD ++   +F 
Sbjct: 400 DFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFK 459

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               +   P  I + T+I+     G+   A  L N+M
Sbjct: 460 DGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEM 496



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 147/332 (44%), Gaps = 5/332 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  LF+ ML   L P V  +  LV A  + G + E+    + +     C P+++T++I
Sbjct: 277 DRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVC-PNLFTFNI 335

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            I+   K    D   ++L  +S  G+    VTYNT+I G  +  +  E E     MV +G
Sbjct: 336 FIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMV-NG 394

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P+ FT NS+I  Y   G +    +   +    G K D  T   L   + + G  D+ 
Sbjct: 395 GFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQA 454

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +V      +   P+++ YN +I+   + G I    +   +M  +G KP+  TY  +++ 
Sbjct: 455 MAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIING 514

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K G +   + ++        I D   +N ++  Y +   ++   EL   M  +   PD
Sbjct: 515 LCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPD 574

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
            IT+ T++   N L  T  ++ +     AM E
Sbjct: 575 VITYNTLL---NGLCKTAKSEEVMEIFKAMTE 603



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 146/356 (41%), Gaps = 35/356 (9%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           ++  LF+ +L  G+ P++  +   +    + G LD A   +  + S    +PDV TY+ +
Sbjct: 313 ESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCV-SREGLRPDVVTYNTV 371

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA---------------KKF 116
           I    +  R    E+ L +M   G E +  TYN+IIDGY K                K F
Sbjct: 372 ICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGF 431

Query: 117 EEMESSFSAMVES-------------------GGCHPDIFTLNSMISAYGNSGNIEKMEK 157
           +  E ++ ++V                      G  P I   N++I      G I    +
Sbjct: 432 KPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQ 491

Query: 158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
             NE    G K DI T N++     + G       ++     +   P + TYN +++ + 
Sbjct: 492 LMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYC 551

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           +   ++   E   +M  +GM P+ ITY +L++   K     +V  I + +       +  
Sbjct: 552 RQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNII 611

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            +N II +   +  V +  +L   MK +   PD ++F T+I  +  +G  + A  L
Sbjct: 612 TYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGL 667



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 16/285 (5%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG--------YGKA 113
           K  ++TY  +++      +F+ +E +L+EM        +   NT+++G        YG+ 
Sbjct: 116 KHTLFTYKSMLQKLGFHGKFNEMENLLSEMR-------SNLDNTLLEGVYVEAMRFYGRK 168

Query: 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
            K +E   +F  M +   C P +++ N++++     G   +  K Y       V++D+ T
Sbjct: 169 GKIQEAVDTFERM-DLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYT 227

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
             I  KS+ R G       ++  M     F   V Y  V+  F + G  ++  E F +M 
Sbjct: 228 YTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEML 287

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
              + P+  T+  LV A  K G +++ + +  +V    V  +   FN  I    + G ++
Sbjct: 288 ECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLD 347

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +   L   +      PD +T+ T+I           A+   +KM+
Sbjct: 348 RAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMV 392



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 100/240 (41%), Gaps = 3/240 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+Q   + A  L   M S G+ P V  Y  L++   ++   +E       M +   C 
Sbjct: 549 GYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAM-TEKGCA 607

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++ TY+ +I+S     + +    +L EM   G+    V++ T+I G+ K    +     
Sbjct: 608 PNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGL 667

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +         T N +ISA+    N++   + ++E    G   D  T  +L   + 
Sbjct: 668 FRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFC 727

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  ++    +    ++ F P++ T+  V+        +++       M  + + P+++
Sbjct: 728 KTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPDTV 787


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 145/313 (46%), Gaps = 5/313 (1%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P V VY A+V+ Y  +G LD A   + DM      +PD YTY+ LI+      R      
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADMPV----EPDAYTYNTLIRGLCGRGRTSNALA 187

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +L +M   G     VTY  +++   K   +++       M + G C PDI T N +++  
Sbjct: 188 VLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKG-CAPDIVTYNVVLNGI 246

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G +E   ++       G + +  + NI+ K    A  ++    +M+ M  +   P V
Sbjct: 247 CQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNV 306

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VT+N++I    + G +E   E  ++M   G  PNS++Y  L+ A+ K   I K    +  
Sbjct: 307 VTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVEL 366

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + +     D   +N +++A  + G+V+   EL   +K++ C P  I++ T+I      G 
Sbjct: 367 MVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGK 426

Query: 327 TEAAQNLENKMIA 339
           T+ A  L ++M +
Sbjct: 427 TKEALELLDEMTS 439



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 148/323 (45%), Gaps = 2/323 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA  L + M   G  P +  Y  +++   Q G +++A   + ++ S   C+P+  +Y+I
Sbjct: 218 KQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYG-CEPNTVSYNI 276

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++K      R++  EK++ EM++ G   + VT+N +I    +    E        M + G
Sbjct: 277 VLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYG 336

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P+  + N ++ A+     I K  ++       G   DI + N L  +  R G  D  
Sbjct: 337 -CTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVA 395

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  ++ +   P +++YN VI+   KAG  ++  E   +M  +G++P+ ITY ++ S 
Sbjct: 396 IELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASG 455

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             +   I +      +V++  +      +N I+    +  +     +LF  M    C+P+
Sbjct: 456 LCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPN 515

Query: 311 NITFATMIQAYNALGMTEAAQNL 333
             T+  +++     G+ + A+ L
Sbjct: 516 ESTYTILVEGLAYEGLVKEAREL 538


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 164/381 (43%), Gaps = 48/381 (12%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK K   +A  +F  +     KP+ + Y +++    Q G  ++     N+M +  DC 
Sbjct: 168 VLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCL 227

Query: 63  PDVYTYSILIKSCTKFHRFD--------------------------------LIEKILA- 89
           PD  TYS LI +  K  R D                                 +EK L  
Sbjct: 228 PDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGL 287

Query: 90  --EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             EM   G   +  TY  +I G GKA K EE  S F  M++  GC PD+  +N++I+  G
Sbjct: 288 VQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKE-GCKPDVVLINNLINLLG 346

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF-----MQKRFF 202
            +G +    K + E   +    ++ T N + K    A    K R+   F     M++   
Sbjct: 347 KAGRLADAIKLFEEMESLQCTPNVVTYNTVIK----ALFESKARASEAFLWYEKMKENGV 402

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P+  TY+I+I+ F K   +EK     ++M  +G  P    YCSL++A  KA      + 
Sbjct: 403 VPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANE 462

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           + +++  +        +  +I   G+ G + +  +LF  MK+  C PD   +  ++    
Sbjct: 463 LFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMV 522

Query: 323 ALGMTEAAQNLENKMIAMKEN 343
            +GMT+ A +L   +  M+EN
Sbjct: 523 RVGMTDEAHSL---LRTMEEN 540



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 159/370 (42%), Gaps = 38/370 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK  + + A  LF+ M  +GL P+  +YT ++  Y + G +++A   + +MK    C  
Sbjct: 240 FGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKE-KGCAL 298

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            VYTY+ LIK   K  + +    I   M   G +   V  N +I+  GKA +  +    F
Sbjct: 299 TVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLF 358

Query: 124 SAMVESGGCHPDIFTLNSMISA-YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             M ES  C P++ T N++I A + +     +   WY +    GV     T +IL   + 
Sbjct: 359 EEM-ESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFC 417

Query: 183 RAGMYDKMRSVMDFMQKRFFFP-----------------------------------TVV 207
           +    +K   +++ M ++ F P                                   +  
Sbjct: 418 KTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSAR 477

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            Y ++I+  GK G + +  + F +MK  G  P+   Y +L+S   + G+  +  S+LR +
Sbjct: 478 VYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTM 537

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           E +    D    N I++ + + G  +   E+F  MK     PD +++ T++   +  GM 
Sbjct: 538 EENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMF 597

Query: 328 EAAQNLENKM 337
           E A  L  +M
Sbjct: 598 EEAAKLMKEM 607



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 144/321 (44%), Gaps = 38/321 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           +GK  + E+A  +F  ML +G KP V +   L++  G++G L +A     +M+S+  C P
Sbjct: 310 VGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ-CTP 368

Query: 64  DV------------------------------------YTYSILIKSCTKFHRFDLIEKI 87
           +V                                    +TYSILI    K +R +    +
Sbjct: 369 NVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLL 428

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
           L EM   G       Y ++I+  GKAK++E     F  + E+ G +        MI   G
Sbjct: 429 LEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCG-YSSARVYAVMIKHLG 487

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G + +    +NE   +G   D+   N L     R GM D+  S++  M++    P + 
Sbjct: 488 KCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLN 547

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           ++NI++  F + G  +   E F +MK+  +KP+ ++Y +++   S+AG+  +   +++++
Sbjct: 548 SHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEM 607

Query: 268 ENSDVILDTPFFNCIISAYGQ 288
            +     D   ++ I+ A G+
Sbjct: 608 NSKGFEYDLITYSSILEAVGK 628



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 138/309 (44%), Gaps = 6/309 (1%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y AL+    ++G+L E + TI +M   S C       S ++K   K    +    I  ++
Sbjct: 127 YMALIHCLDEAGMLGEMWKTIQEMVR-STCVIGPADLSEIVKVLGKAKMVNKALSIFYQI 185

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
                + ++ TYN++I    +    E++   ++ M   G C PD  T +++I+A+G  G 
Sbjct: 186 KGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGR 245

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            +     ++E    G+    +    +   Y + G  +K   ++  M+++    TV TY  
Sbjct: 246 DDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTE 305

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+  GKAG +E+    F  M   G KP+ +   +L++   KAG +     +  ++E+  
Sbjct: 306 LIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ 365

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFL---TMKERHCVPDNITFATMIQAYNALGMTE 328
              +   +N +I A  ++    +  E FL    MKE   VP + T++ +I  +      E
Sbjct: 366 CTPNVVTYNTVIKALFESK--ARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVE 423

Query: 329 AAQNLENKM 337
            A  L  +M
Sbjct: 424 KALLLLEEM 432



 Score = 44.7 bits (104), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 1/132 (0%)

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V + +V E       I    ++FK   K R  + +S TY +L+    +AG++ ++   ++
Sbjct: 89  VDHRLVREVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQ 148

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++  S  ++     + I+   G+A  V K   +F  +K R C P + T+ +MI      G
Sbjct: 149 EMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEG 208

Query: 326 MTEAAQNLENKM 337
             E    L N+M
Sbjct: 209 HHEKVHELYNEM 220


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 153/331 (46%), Gaps = 10/331 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+AS + + M+  GL P V  Y  +V  + +   L  A   + DM S+S C PDV TY+ 
Sbjct: 74  ERASRVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDM-SLSGCPPDVITYNT 132

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID----GYGKAKKFEEMESSFSAM 126
           +I+S     +FD   +        G     + Y  +I+      G  +  E +E      
Sbjct: 133 IIRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLED----- 187

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           +   GC+PD+ T NS+++     G  E            G++ +  T N L  S    G+
Sbjct: 188 MAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGL 247

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           +D++  ++  M+K    PTVVTYNI+I    K G +E+   +F +M      P+ ITY +
Sbjct: 248 WDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNT 307

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++A  K G++ +   +   + +S+       +N +I    + G +++  +L+  M E+ 
Sbjct: 308 LLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKG 367

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             PD IT  +++  +  +   E A  +  +M
Sbjct: 368 IAPDGITHRSLVWGFCWIDQVEDAVEILREM 398



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 153/331 (46%), Gaps = 2/331 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA   +   L  G  P +  YT L+    +      A   + DM ++  C PD+ TY+ 
Sbjct: 144 DQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDM-AIEGCYPDLVTYNS 202

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+   +K  +++    I+  +   G+E +A+TYN+++        ++E++   + M ++ 
Sbjct: 203 LVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTS 262

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P + T N +I+     G +E+   ++ +        DI T N L  +  + GM D+ 
Sbjct: 263 H-PPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEA 321

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V   +      P ++TYN VI+   + G++++  + + +M  +G+ P+ IT+ SLV  
Sbjct: 322 LQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWG 381

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           +     +     ILR++   D  +++  +  +I+   +   V+   ++   M      PD
Sbjct: 382 FCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPD 441

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMK 341
              ++T+I++    GM E A  L  K+I  K
Sbjct: 442 EEIYSTLIKSVADAGMVEEADELHQKLIERK 472



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 146/328 (44%), Gaps = 4/328 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+ L ++M      P+    T L+    + G ++ A   +  M  +S   PDV TY+++
Sbjct: 40  EATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTM-VMSGLVPDVITYNMM 98

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    K  +      +L +MS  G     +TYNTII       KF++    +   +  G 
Sbjct: 99  VGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRG- 157

Query: 132 CHPDIFTLNSMIS-AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           C P +     +I   + + G +  +E    +  + G   D+ T N L     + G Y+  
Sbjct: 158 CLPYLIPYTILIELVWKHCGTVRALEV-LEDMAIEGCYPDLVTYNSLVNFASKEGKYEDA 216

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  +      P  +TYN ++ +    G  ++++E    MK     P  +TY  L++ 
Sbjct: 217 ALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILING 276

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K GL+ +  +   Q+ + +   D   +N +++A  + G V++  ++F+ + + +C P 
Sbjct: 277 LCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPG 336

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
            IT+ T+I      G  + A  L N+MI
Sbjct: 337 LITYNTVIDGLTRRGYMDEALKLYNQMI 364



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 114/270 (42%), Gaps = 5/270 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A+L+   +LS G++P+   Y +L+ +    GL DE    +  MK  S   P V TY+I
Sbjct: 214 EDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSH-PPTVVTYNI 272

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K    +       +M         +TYNT++    K    +E    F  + +S 
Sbjct: 273 LINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSN 332

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P + T N++I      G +++  K YN+    G+  D  T   L   +      +  
Sbjct: 333 -CSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDA 391

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M KR        Y +VI    +   ++   +  + M     KP+   Y +L+ +
Sbjct: 392 VEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKS 451

Query: 251 YSKAGLIMKVDSILRQVENSDV---ILDTP 277
            + AG++ + D + +++    V   ILD P
Sbjct: 452 VADAGMVEEADELHQKLIERKVLRTILDKP 481



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 1/173 (0%)

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           V+ D +T N +  +  + G   +   ++D M +    P       +I    + G IE+  
Sbjct: 18  VENDEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERAS 77

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
              K M   G+ P+ ITY  +V  + K   +     +L  +  S    D   +N II + 
Sbjct: 78  RVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSL 137

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQ-AYNALGMTEAAQNLENKMI 338
              G  ++  E +     R C+P  I +  +I+  +   G   A + LE+  I
Sbjct: 138 FDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAI 190


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 169/404 (41%), Gaps = 74/404 (18%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A   F+ +  +G KP    Y +++  +G++G+  EA + + +M+  ++C+PD  TY+ 
Sbjct: 325 DEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMED-NNCEPDAITYNE 383

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +    D    ++  M+  G+  +A+TY T+I+ YGKA   ++    F  M E G
Sbjct: 384 LVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELG 443

Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                                             GC PD  T N+M++  G  G  + + 
Sbjct: 444 CVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVS 503

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           +   E    G + D +T N L  +YGR G    +  +   M    F P + TYN ++   
Sbjct: 504 QVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNAL 563

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI------------- 263
            + G+ +  E     M+ +G KPN  +Y  L+  YSKAG +  ++ +             
Sbjct: 564 ARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSW 623

Query: 264 ----------------------LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
                                   Q++N+   LD    N ++S + +   +EK  E+   
Sbjct: 624 MLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDV 683

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           +      P+ +T+ ++I  Y  +G    A+    +M+   +NSG
Sbjct: 684 IHVSGLQPNLVTYNSLIDLYARVGDCWKAE----EMLKDIQNSG 723



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 153/338 (45%), Gaps = 3/338 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           MLG+  Q   AS LF+++  +     V   T ++ AY ++G    A      MK  +   
Sbjct: 211 MLGRESQYSIASKLFDIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKE-TGLD 269

Query: 63  PDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY++++    K  R + +I ++L EM   G+E    T  T+I   G+    +E   
Sbjct: 270 PTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEARR 329

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  + +  G  P   T NSM+  +G +G   +      E      + D  T N L  +Y
Sbjct: 330 FFDDL-KLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAY 388

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            RAG +D+  +V+D M  +   P  +TY  VI  +GKAG  +K  E F +MK  G  PN 
Sbjct: 389 VRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNV 448

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY +++    K      +  IL  ++ +    D   +N +++  G+ G  + + ++   
Sbjct: 449 CTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLRE 508

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           MK     PD  TF T+I AY   G       +  +M+A
Sbjct: 509 MKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVA 546



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 154/322 (47%), Gaps = 25/322 (7%)

Query: 11  EQASLLFEVML----SDGLK---PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           E+A LLFE +     S+ +K    SV+    ++    Q  +  + F  I           
Sbjct: 180 ERAFLLFEWVWLNFGSENMKVDDQSVEFMVKMLGRESQYSIASKLFDII----------- 228

Query: 64  DVYTYSILIKSCTK-FHRFDLIEK------ILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            V  YS+ +K+CT   H +    K      I  +M   G++ + VTYN ++D YGK  + 
Sbjct: 229 PVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRA 288

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
             M       + S G   D FT  ++ISA G  G +++  +++++  L G K    T N 
Sbjct: 289 WSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNS 348

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           + + +G+AG+Y +  +++  M+     P  +TYN ++  + +AG  ++       M  +G
Sbjct: 349 MLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKG 408

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + PN+ITY ++++AY KAG   K   +  Q++    + +   +N ++   G+    E M 
Sbjct: 409 VMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMI 468

Query: 297 ELFLTMKERHCVPDNITFATMI 318
           ++   MK   C PD IT+ TM+
Sbjct: 469 KILCDMKLNGCPPDRITWNTML 490



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 160/349 (45%), Gaps = 13/349 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI----NDMKSVSDCKPDVY 66
           ++A  +FE M   GL P++  Y  ++  YG+ G    A+S I    ++M+S    + D +
Sbjct: 254 KRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMG---RAWSMILELLDEMRS-KGLEFDEF 309

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           T + +I +C +    D   +   ++   G +    TYN+++  +GKA  + E  +    M
Sbjct: 310 TCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEM 369

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E   C PD  T N +++AY  +G  ++     +     GV  +  T   +  +YG+AG 
Sbjct: 370 -EDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGD 428

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            DK   V   M++    P V TYN V+   GK    E M +    MK  G  P+ IT+ +
Sbjct: 429 ADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNT 488

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           +++   + G    V  +LR+++N     D   FN +ISAYG+ G    + +++  M    
Sbjct: 489 MLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAG 548

Query: 307 CVPDNITFATMIQAYNALGMTEAAQ----NLENKMIAMKENSGKKLIQC 351
             P   T+  ++ A    G  +AA+    ++  K     E S   L+ C
Sbjct: 549 FTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHC 597



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 162/356 (45%), Gaps = 9/356 (2%)

Query: 3   MLGKCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ML  C +  +   + +V   M + G +P  + +  L+SAYG+ G   +      +M + +
Sbjct: 489 MLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVA-A 547

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P + TY+ L+ +  +   +   E ++ +M   G + +  +Y+ ++  Y KA     +
Sbjct: 548 GFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGL 607

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E      +  G   P    L +++        ++ ME+ +++    G K D+  +N +  
Sbjct: 608 EK-VEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLS 666

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + R    +K   ++D +      P +VTYN +I+ + + G   K EE  K +++ G+ P
Sbjct: 667 MFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISP 726

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + ++Y +++  + K GL+ +   IL ++  + V      FN  +S Y   G   +  E+ 
Sbjct: 727 DVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEVI 786

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKENSGKKLIQC 351
             M E  C+P+ +T+  +I  Y      + A +  +K+    I+  + S KKL  C
Sbjct: 787 RYMIEHGCMPNELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDISFDDQSLKKLASC 842


>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 564

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 143/284 (50%), Gaps = 2/284 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G   Q E+A  L + M  +G+ P+   ++A VSA G++G    A + +  M++ ++C P+
Sbjct: 158 GNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRMRA-ANCPPN 216

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+  I +C K   + L + +LAEM   G+  + +T+N+ I   G   +++E  +   
Sbjct: 217 VQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLR 276

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M  S G  P++++  + ++A G++    +    + +    G++ D  +      +  + 
Sbjct: 277 DM-PSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQG 335

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G ++   +++D M+     PTV +++  I   GK     +     ++M+  G+ PN +++
Sbjct: 336 GAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSF 395

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            + + A  +AG      S+L ++ ++ V   T  +N +I+A G+
Sbjct: 396 NAAIDACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACGK 439



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 134/310 (43%), Gaps = 2/310 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   M + GL P+V  +++ V+A G +G  + A   ++ M       P+ +T+S 
Sbjct: 129 QRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAE-EGVPPNEFTFSA 187

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            + +C K  ++     IL  M       +  TY   ID  GKA ++   +   + M E G
Sbjct: 188 AVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKG 247

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T NS ISA GN G  ++      +   MGV+ ++ +      + G    + + 
Sbjct: 248 -VAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARA 306

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +V + M+ R      V++   I+   + G  E       +M+  G+ P   ++ + +SA
Sbjct: 307 LAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISA 366

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K     +  ++LR++E   V  +   FN  I A G+AG       L   M        
Sbjct: 367 CGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVPRG 426

Query: 311 NITFATMIQA 320
            IT+  +I A
Sbjct: 427 TITYNAVIAA 436



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 142/324 (43%), Gaps = 10/324 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  Q ++A     +   DG+   V  Y+ L+SA  +SG  +E    ++ M+S     PD
Sbjct: 45  GRKGQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRS-EGVAPD 103

Query: 65  VYTYSILIKSCTKFHRFD----LIE----KILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            + +   + +C K  +++    L++    ++L EM+ +G+  +  T+++ +   G A ++
Sbjct: 104 HFAFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQW 163

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           E        M E  G  P+ FT ++ +SA G +G                   ++QT   
Sbjct: 164 ERALGLLDQMAEE-GVPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTA 222

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
              + G+AG +   + ++  M+++   P V+T+N  I   G  G  ++     + M   G
Sbjct: 223 AIDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMG 282

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           ++PN  +Y + V+A        +  ++  Q+ +  +  D   F   I A  Q G  E   
Sbjct: 283 VQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMAL 342

Query: 297 ELFLTMKERHCVPDNITFATMIQA 320
            L   M++    P   +F+T I A
Sbjct: 343 ALLDEMRDEGIPPTVRSFSTAISA 366



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 152/345 (44%), Gaps = 10/345 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-------LLDE-AFSTI 52
           M  + +  + E+  +L +VM S+G+ P    + A V+A  + G       LLD+ A   +
Sbjct: 76  MSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALLDQRALRLL 135

Query: 53  NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112
            +M +V    P+V T+S  + +C    +++    +L +M+  G+  +  T++  +   GK
Sbjct: 136 GEMAAVG-LSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVSACGK 194

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
           A ++    +    M  +  C P++ T  + I A G +G     +    E    GV  ++ 
Sbjct: 195 AGQWRPALTILRRM-RAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGVAPNVI 253

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T N    + G  G + +  +++  M      P + +Y   +   G      +     ++M
Sbjct: 254 TFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQM 313

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           + RG++ + +++ + + A ++ G      ++L ++ +  +      F+  ISA G+    
Sbjct: 314 RSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQW 373

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +   L   M+E    P+ ++F   I A    G   AA +L +KM
Sbjct: 374 GRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKM 418



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 132/305 (43%), Gaps = 8/305 (2%)

Query: 40  GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 99
           G+ G   EA +  N +        DVYTYS+L+ +  +  R++ +  +L  M   G+   
Sbjct: 45  GRKGQWKEALTAAN-LAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPD 103

Query: 100 AVTYNTIIDGYGKAKKFEEM-----ESSFSAMVESG--GCHPDIFTLNSMISAYGNSGNI 152
              +   ++   K  ++E       + +   + E    G  P++ T +S ++A GN+G  
Sbjct: 104 HFAFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQW 163

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           E+     ++    GV  +  T +    + G+AG +    +++  M+     P V TY   
Sbjct: 164 ERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAA 223

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           I+  GKAG     +    +M+ +G+ PN IT+ S +SA    G   +  ++LR + +  V
Sbjct: 224 IDACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGV 283

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
             +   +   ++A G      +   +   M+ R    D ++F   I A    G  E A  
Sbjct: 284 QPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALA 343

Query: 333 LENKM 337
           L ++M
Sbjct: 344 LLDEM 348



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 8/214 (3%)

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D++T + ++SA   SG  E++    +     GV  D         +  + G +++  +++
Sbjct: 68  DVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALL 127

Query: 195 DFMQKRFF--------FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           D    R           P V T++  +   G AG  E+      +M   G+ PN  T+ +
Sbjct: 128 DQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSA 187

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
            VSA  KAG      +ILR++  ++   +   +   I A G+AG+      L   M+E+ 
Sbjct: 188 AVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKG 247

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             P+ ITF + I A    G  + A NL   M +M
Sbjct: 248 VAPNVITFNSAISALGNGGQWQEALNLLRDMPSM 281



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 12/231 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG   Q ++A  L   M S G++P++  YTA V+A G +     A +    M+S    + 
Sbjct: 262 LGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRS-RGIRG 320

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  +++  I +C +   +++   +L EM   GI  +  +++T I   GK +++    +  
Sbjct: 321 DEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALL 380

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E  G  P+  + N+ I A G +G         ++ +  GV     T N +  + G+
Sbjct: 381 REM-EEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACGK 439

Query: 184 AGMYDKMRSVMDFM---QKR-------FFFPTVVTYNIVIETFGKAGHIEK 224
              + +  SV+  M   Q +            VV+Y+  I+   +AG  E+
Sbjct: 440 GKEWARAVSVLREMLAGQAKTDGDMAPVPMADVVSYSAAIDACVRAGEWEE 490


>gi|255557939|ref|XP_002519998.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540762|gb|EEF42322.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 498

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 152/309 (49%), Gaps = 2/309 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +  ++   GL  + + Y  L+     +G L++ +S IN+MK     + + + YS +I
Sbjct: 110 AERVLRILDDLGLHRNQETYEILLDYNVNAGRLEDTWSVINEMKQ-KGFQLNSFVYSKVI 168

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                   +     I+ E+  +G+      YN+IID +GK  + +E     S M +  G 
Sbjct: 169 GLYRDNGMWKKAIGIIEEIREMGMPLDKHIYNSIIDTFGKYGELDEALEVLSNM-QQQGI 227

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PDI T NS+I  +  +GN+ K  + +++    G+  D + L  +       G ++ +R 
Sbjct: 228 TPDIVTWNSLIRWHCKAGNLSKALELFSKMQAQGLYPDPKILVTIISRLAEQGKWNIIRE 287

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
             D M+   +  +   Y I+++ +G+ G  +  EE    +K  G+ P++  +C L +AY+
Sbjct: 288 NFDIMKSWGYKKSGAIYAILVDIYGQYGRFQDAEECISALKSEGILPSASMFCVLANAYA 347

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           + GL  +   +L+ +E   +  +    N +I+A+G AG   +   ++  MKE    PD +
Sbjct: 348 QQGLCEQTVKVLQLMEAEGIEPNLIMLNVLINAFGIAGRHREALSIYHHMKESGISPDVV 407

Query: 313 TFATMIQAY 321
           T++T+++AY
Sbjct: 408 TYSTLMKAY 416



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 146/329 (44%), Gaps = 24/329 (7%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L   M S G  PS   YT L+      G   EA +   +M      KP +  Y+I
Sbjct: 38  DKAMTLLADMQSLGFHPSSLSYTCLIETLLSVGRTLEAEALYQEMMCFG-LKPRLKLYNI 96

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +++   K     + E++L  +  LG+  +  TY  ++D    A + E+  S  + M + G
Sbjct: 97  MLRGFLKKGLLRVAERVLRILDDLGLHRNQETYEILLDYNVNAGRLEDTWSVINEMKQKG 156

Query: 131 GCHPDIFTLNS-----MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
                 F LNS     +I  Y ++G  +K      E   MG+  D    N +  ++G+ G
Sbjct: 157 ------FQLNSFVYSKVIGLYRDNGMWKKAIGIIEEIREMGMPLDKHIYNSIIDTFGKYG 210

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D+   V+  MQ++   P +VT+N +I    KAG++ K  E F KM+ +G+ P+     
Sbjct: 211 ELDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAGNLSKALELFSKMQAQGLYPDPKILV 270

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPF------FNCIISAYGQAGDVEKMGELF 299
           +++S  ++ G      +I+R  EN D++    +      +  ++  YGQ G  +   E  
Sbjct: 271 TIISRLAEQGKW----NIIR--ENFDIMKSWGYKKSGAIYAILVDIYGQYGRFQDAEECI 324

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTE 328
             +K    +P    F  +  AY   G+ E
Sbjct: 325 SALKSEGILPSASMFCVLANAYAQQGLCE 353



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 1/245 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G E S  +YN+ I    K    ++  +  + M +S G HP   +   +I    + G   +
Sbjct: 16  GQELSGESYNSCICDCCKVGDVDKAMTLLADM-QSLGFHPSSLSYTCLIETLLSVGRTLE 74

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
            E  Y E    G+K  ++  NI+ + + + G+      V+  +          TY I+++
Sbjct: 75  AEALYQEMMCFGLKPRLKLYNIMLRGFLKKGLLRVAERVLRILDDLGLHRNQETYEILLD 134

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
               AG +E       +MK +G + NS  Y  ++  Y   G+  K   I+ ++    + L
Sbjct: 135 YNVNAGRLEDTWSVINEMKQKGFQLNSFVYSKVIGLYRDNGMWKKAIGIIEEIREMGMPL 194

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           D   +N II  +G+ G++++  E+   M+++   PD +T+ ++I+ +   G    A  L 
Sbjct: 195 DKHIYNSIIDTFGKYGELDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAGNLSKALELF 254

Query: 335 NKMIA 339
           +KM A
Sbjct: 255 SKMQA 259



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 122/284 (42%), Gaps = 2/284 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G+     +Y +++  +G+ G LDEA   +++M+      PD+ T++ LI+   K      
Sbjct: 191 GMPLDKHIYNSIIDTFGKYGELDEALEVLSNMQQ-QGITPDIVTWNSLIRWHCKAGNLSK 249

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             ++ ++M   G+        TII    +  K+  +  +F  M +S G          ++
Sbjct: 250 ALELFSKMQAQGLYPDPKILVTIISRLAEQGKWNIIRENFDIM-KSWGYKKSGAIYAILV 308

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             YG  G  +  E+  +     G+        +L  +Y + G+ ++   V+  M+     
Sbjct: 309 DIYGQYGRFQDAEECISALKSEGILPSASMFCVLANAYAQQGLCEQTVKVLQLMEAEGIE 368

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P ++  N++I  FG AG   +    +  MK  G+ P+ +TY +L+ AY +A    +V  I
Sbjct: 369 PNLIMLNVLINAFGIAGRHREALSIYHHMKESGISPDVVTYSTLMKAYIRARKFDEVPEI 428

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
             ++E+S    D      + +A    G      ++FL M    C
Sbjct: 429 YSEMESSGCTPDKKAREILQAALMVLGRRNCKFQIFLAMLADIC 472



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 136/310 (43%), Gaps = 2/310 (0%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
           S G + S + Y + +    + G +D+A + + DM+S+    P   +Y+ LI++     R 
Sbjct: 14  STGQELSGESYNSCICDCCKVGDVDKAMTLLADMQSLG-FHPSSLSYTCLIETLLSVGRT 72

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
              E +  EM   G++     YN ++ G+ K K    +      +++  G H +  T   
Sbjct: 73  LEAEALYQEMMCFGLKPRLKLYNIMLRGFLK-KGLLRVAERVLRILDDLGLHRNQETYEI 131

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           ++    N+G +E      NE    G + +    + +   Y   GM+ K   +++ +++  
Sbjct: 132 LLDYNVNAGRLEDTWSVINEMKQKGFQLNSFVYSKVIGLYRDNGMWKKAIGIIEEIREMG 191

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
                  YN +I+TFGK G +++  E    M+ +G+ P+ +T+ SL+  + KAG + K  
Sbjct: 192 MPLDKHIYNSIIDTFGKYGELDEALEVLSNMQQQGITPDIVTWNSLIRWHCKAGNLSKAL 251

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +  +++   +  D      IIS   + G    + E F  MK          +A ++  Y
Sbjct: 252 ELFSKMQAQGLYPDPKILVTIISRLAEQGKWNIIRENFDIMKSWGYKKSGAIYAILVDIY 311

Query: 322 NALGMTEAAQ 331
              G  + A+
Sbjct: 312 GQYGRFQDAE 321



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
           S+G+ PS  ++  L +AY Q GL ++    +  M++    +P++   ++LI +     R 
Sbjct: 329 SEGILPSASMFCVLANAYAQQGLCEQTVKVLQLMEA-EGIEPNLIMLNVLINAFGIAGRH 387

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                I   M   GI    VTY+T++  Y +A+KF+E+   +S M ES GC PD
Sbjct: 388 REALSIYHHMKESGISPDVVTYSTLMKAYIRARKFDEVPEIYSEM-ESSGCTPD 440


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 164/370 (44%), Gaps = 37/370 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + +Q   A  LF+ ++S GL+P V VYTA+V +  +      A   I  M+S S C  
Sbjct: 190 LIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMES-SGCDL 248

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V TY++ I+   K  R     +I   +SY G+     TY T++ G  K ++FE  E   
Sbjct: 249 SVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMM 308

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M+E G   P    +++++      GNI       N+    GV   +   N L  S  +
Sbjct: 309 NEMIEFGFV-PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCK 367

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE-------KMEE--------- 227
            G  D+  S+ + M  +  FP  VTY+I+I++F K G ++       KM E         
Sbjct: 368 DGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYP 427

Query: 228 -------------------YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
                               F +M   G+KPN + Y SL+S Y K G +     +  ++ 
Sbjct: 428 YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMT 487

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              +  +T  F  +IS    A  + +  +LF  M E + +P+ +T+  +I+ +   G T 
Sbjct: 488 GKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTV 547

Query: 329 AAQNLENKMI 338
            A  L ++M+
Sbjct: 548 RAFELLDEMV 557



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 150/351 (42%), Gaps = 37/351 (10%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G+ PS+ VY AL+++  + G LDEA S  N+M       P+  TYSILI S  K  + D+
Sbjct: 350 GVAPSLFVYNALINSMCKDGKLDEAESLFNNMGH-KGLFPNDVTYSILIDSFCKRGKLDV 408

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
               L +M+ +GI+ +   Y+++I G+ K  K    +S F  M+ + G  P++    S+I
Sbjct: 409 ALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMI-ANGLKPNVVIYTSLI 467

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           S Y   G +    + Y+E    G+  +  T   L      A    +   +   M +    
Sbjct: 468 SGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVI 527

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P  VTYN++IE   K G+  +  E   +M  +G+ P++ TY  L+S     G + +    
Sbjct: 528 PNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREF 587

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAG--------------------------------- 290
           +  ++     L+   F+ ++  Y + G                                 
Sbjct: 588 MNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILR 647

Query: 291 --DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             D   + +L   M ++   PDN+ + TMI A    G  + A  L + M++
Sbjct: 648 QQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVS 698



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 124/289 (42%), Gaps = 3/289 (1%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           ++AL+  Y + G LD+A     +M        D+  YS+LI    +      I  +L +M
Sbjct: 603 FSALLHGYCKEGRLDDALDACREMLG-RGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQM 661

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
              G+    V Y T+ID   KA   +     +  MV S GC P++ T  ++I+     G 
Sbjct: 662 HDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMV-SEGCLPNVVTYTALINGLCKIGL 720

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           ++K E    E        +  T           G  +K   + D + + F   TV TYNI
Sbjct: 721 MDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTV-TYNI 779

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I  F K G I++  E    M   G+ P+ I+Y +++  Y + G + +   +   + N  
Sbjct: 780 LIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRG 839

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           V  DT  +N +I      G++ K  EL   M  R   P+  T+ ++I  
Sbjct: 840 VNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 888



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 138/336 (41%), Gaps = 5/336 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+    +A  L + M+  GL P    Y  L+S    +G + EA   +ND++     K
Sbjct: 539 GHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQ-K 597

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            +   +S L+    K  R D       EM   G+    V Y+ +I G  + +    +   
Sbjct: 598 LNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDL 657

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M + G   PD     +MI A   +GN++     ++     G   ++ T   L     
Sbjct: 658 LKQMHDQG-LRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLC 716

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G+ DK   +   M      P   TY   ++     G+IEK  +    +   G   N++
Sbjct: 717 KIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQ-LHDVLLEGFLANTV 775

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+  + K G I +   +L  + +S +  D   ++ II  Y + GD+++  +L+ +M
Sbjct: 776 TYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESM 835

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             R   PD + +  +I      G    A  L + M+
Sbjct: 836 LNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMM 871



 Score = 39.3 bits (90), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 3/111 (2%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  + ++A+ +   M+  G+ P    Y+ ++  Y + G L EA      M + 
Sbjct: 779 ILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLN- 837

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
               PD   Y+ LI  C          ++  +M   G++ +  TYN++I G
Sbjct: 838 RGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 888


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 161/339 (47%), Gaps = 7/339 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E    +FE M   G++P V +YTAL+ +  + G + +A + + DM +    +
Sbjct: 173 GYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKA-ARVMDMMTERGLE 231

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V TY++LI S  K         +   MS  G++   VTYNT+I G     + +E  + 
Sbjct: 232 PNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMAL 291

Query: 123 FSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
              M++      PD+ T NS+I      G + +  +        G + ++   N+L    
Sbjct: 292 LEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGL 351

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R     K   +MD M      P   TY+I+I  F K   +E+ E Y  +M+H+GM+P  
Sbjct: 352 LRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEP 411

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           + Y  L+ A    G++ +   +  +++  +  LD   ++ +I    ++G+ +K+ E FL 
Sbjct: 412 VHYIPLLKAMCDQGMMGQARDLFNEMDR-NCKLDAAAYSTMIHGAFKSGE-KKIAEEFLK 469

Query: 302 -MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            M +   +PD +T++  I  +   G   AA+ +  +M A
Sbjct: 470 DMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTA 508



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 142/305 (46%), Gaps = 3/305 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM-KSVSDCKPDVYTYSILIKSCTKF 78
           M   G++P V  Y  L++       +DEA + + +M +  +  +PD+ T++ +I    K 
Sbjct: 260 MSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKI 319

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
                  ++ A M+  G  C+ V +N +I G  +  K ++       M  SG   PD FT
Sbjct: 320 GWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSG-LQPDSFT 378

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
            + +I+ +     +E+ E + +E    G++ +      L K+    GM  + R + + M 
Sbjct: 379 YSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMD 438

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           +         Y+ +I    K+G  +  EE+ K M   G+ P+++TY   ++ ++K+G + 
Sbjct: 439 RNCKL-DAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLA 497

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             + +L+Q+  S  + D   F+ +I  YG  GD EK+ EL   M  +    D    +T++
Sbjct: 498 AAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIV 557

Query: 319 QAYNA 323
            +  A
Sbjct: 558 TSLGA 562



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 149/338 (44%), Gaps = 21/338 (6%)

Query: 10  PEQASLLFEVMLSDGLKPSVD---VYTALVSAYGQSGLLDEAFSTINDMKSVSD--CKPD 64
           PE  +LL  +       PSV     Y  +++A  + G LD A   +  M        +P+
Sbjct: 41  PESPALLSAL-------PSVRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPN 93

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +Y+ L+++     R      +L  M   G+    VTY T+I G   A   +      +
Sbjct: 94  AISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLN 153

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M ESG   P++   + ++  Y  +G  E + K + E +  G++ D+     L  S  R 
Sbjct: 154 EMCESG-IEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRH 212

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   K   VMD M +R   P VVTYN++I +  K G + +  +  K M  +G++P+ +TY
Sbjct: 213 GKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTY 272

Query: 245 CSLVSAYSKAGLIMKVDSILRQVE-----NSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
            +L++  S    ++++D  +  +E      + V  D   FN +I    + G + +  ++ 
Sbjct: 273 NTLITGLSS---VLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVR 329

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             M E  C  + + F  +I     +   + A  L ++M
Sbjct: 330 AMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEM 367



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 149/332 (44%), Gaps = 4/332 (1%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           ++  QA  L   M   G++P V  Y  L+     +  +D A   +N+M   S  +P+V  
Sbjct: 108 RRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCE-SGIEPNVVV 166

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           YS L+    K  R++ + K+  EMS  GIE   V Y  +ID   +  K ++       M 
Sbjct: 167 YSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMT 226

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E  G  P++ T N +I++    G++ +        +  GV+ D+ T N L          
Sbjct: 227 ER-GLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEM 285

Query: 188 DKMRSVMDFMQK--RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           D+  ++++ M +      P ++T+N VI    K G + +  +    M   G + N + + 
Sbjct: 286 DEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFN 345

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+    +   + K   ++ ++ +S +  D+  ++ +I+ + +   VE+       M+ +
Sbjct: 346 LLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQ 405

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              P+ + +  +++A    GM   A++L N+M
Sbjct: 406 GMEPEPVHYIPLLKAMCDQGMMGQARDLFNEM 437


>gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g13040, mitochondrial; Flags: Precursor
 gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana]
 gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 159/321 (49%), Gaps = 4/321 (1%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  M+  G +P V  YT L++   ++G + +A    N M   S   PD    + L+    
Sbjct: 137 FFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIR-SGVSPDNKACAALVVGLC 195

Query: 77  KFHRFDLIEKILAE-MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
              + DL  +++AE +    ++ S V YN +I G+ KA + E+ E+  S M + G C PD
Sbjct: 196 HARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIG-CEPD 254

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T N +++ Y ++  +++ E    E    G++ D  + N L K + R    DK  + M 
Sbjct: 255 LVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMV 314

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
              +   F  VV+Y+ +IETF +A +  K    F++M+ +GM  N +TY SL+ A+ + G
Sbjct: 315 KEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREG 374

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
                  +L Q+    +  D  F+  I+    ++G+V+K   +F  M E    PD I++ 
Sbjct: 375 NSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYN 434

Query: 316 TMIQAYNALG-MTEAAQNLEN 335
           ++I      G +TEA +  E+
Sbjct: 435 SLISGLCRSGRVTEAIKLFED 455



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 152/323 (47%), Gaps = 7/323 (2%)

Query: 2   VMLGKCKQPEQASLLFEVML----SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           +++G C    +  L +E++     S  +K S  VY AL+S + ++G +++A +  + M  
Sbjct: 190 LVVGLC-HARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSK 248

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           +  C+PD+ TY++L+      +     E ++AEM   GI+  A +YN ++  + +    +
Sbjct: 249 IG-CEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPD 307

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +  +     +E  G   D+ + +++I  +  + N  K  + + E    G+  ++ T   L
Sbjct: 308 KCYNFMVKEMEPRG-FCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSL 366

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            K++ R G     + ++D M +    P  + Y  +++   K+G+++K    F  M    +
Sbjct: 367 IKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEI 426

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P++I+Y SL+S   ++G + +   +   ++  +   D   F  II    +   +    +
Sbjct: 427 TPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYK 486

Query: 298 LFLTMKERHCVPDNITFATMIQA 320
           ++  M ++    D     T+I+A
Sbjct: 487 VWDQMMDKGFTLDRDVSDTLIKA 509



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 38/308 (12%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y + ++   +SG++D A    ++M+  S  +   + Y+  I    +  RF+L E I  +M
Sbjct: 12  YRSRIANLVKSGMIDNAVQVFDEMRH-SSYRVFSFDYNRFIGVLVRESRFELAEAIYWDM 70

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
             +G      TY+  I G  K KKF+ +++  S M E+ G  PDI+  N  +        
Sbjct: 71  KPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDM-ETLGFIPDIWAFNVYLDLLCRENK 129

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
                          V   +QT   + +  GR                    P VV+Y I
Sbjct: 130 ---------------VGFAVQTFFCMVQR-GRE-------------------PDVVSYTI 154

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI-MKVDSILRQVENS 270
           +I    +AG +    E +  M   G+ P++    +LV     A  + +  + +  +++++
Sbjct: 155 LINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSA 214

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            V L T  +N +IS + +AG +EK   L   M +  C PD +T+  ++  Y    M + A
Sbjct: 215 RVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRA 274

Query: 331 QNLENKMI 338
           + +  +M+
Sbjct: 275 EGVMAEMV 282



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 119/274 (43%), Gaps = 4/274 (1%)

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           +TYS  I    K  +FDLI+ +L++M  LG       +N  +D   +  K      +F  
Sbjct: 80  FTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFC 139

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           MV+ G   PD+ +   +I+    +G +    + +N     GV  D +    L      A 
Sbjct: 140 MVQRGR-EPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHAR 198

Query: 186 MYDKMRSVM--DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
             D    ++  +    R    TVV YN +I  F KAG IEK E     M   G +P+ +T
Sbjct: 199 KVDLAYEMVAEEIKSARVKLSTVV-YNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVT 257

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L++ Y    ++ + + ++ ++  S + LD   +N ++  + +    +K     +   
Sbjct: 258 YNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEM 317

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           E     D ++++T+I+ +     T  A  L  +M
Sbjct: 318 EPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEM 351


>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
 gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
          Length = 700

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 137/274 (50%), Gaps = 1/274 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V  Y++ +K   K    D  EK+  EM   G++    T++TII         ++    F
Sbjct: 175 EVVVYNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVEWF 234

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  S G  PD  TL++MI +YG +GN+EK    Y+       + D    + L + Y  
Sbjct: 235 EKM-PSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKV 293

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG +D   +V + M+     P +V YNI+++  G+A    +++++++ +   G+ P+ +T
Sbjct: 294 AGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVT 353

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+ AY +A        I R+++   + L+   +N I++     G V+K  E+F  MK
Sbjct: 354 YAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMK 413

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
                PD+ TF++MI  ++  G    A+N  N+M
Sbjct: 414 SSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEM 447



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 163/386 (42%), Gaps = 47/386 (12%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLK--PSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+L     P+ A L  +    + LK    V VY   +  + +   LD+A    ++M   
Sbjct: 147 VVILNNMSNPDTALLALK-FFQERLKFNREVVVYNVTLKVFRKGRDLDKAEKLFDEMLE- 204

Query: 59  SDCKPDVYTYSILIKSCTKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
              KPD +T+S +I SC +     D   +   +M   G+E   VT +T+ID YG+A   E
Sbjct: 205 RGVKPDNFTFSTII-SCARLCNLADKAVEWFEKMPSFGLEPDDVTLSTMIDSYGRAGNVE 263

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +  S +     +G    D    +++I  Y  +GN +     Y E   +GVK ++   NIL
Sbjct: 264 KALSLYD-RARTGEWRLDATAFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVIYNIL 322

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA------------------ 219
             + GRA    +++     +      P+ VTY  ++  +G+A                  
Sbjct: 323 LDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGL 382

Query: 220 -----------------GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
                            GH++K  E F+ MK  G+KP+S T+ S+++ +S  G + + ++
Sbjct: 383 GLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAEN 442

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
            L ++  +    +      +I  YG+A  ++ +   F  + E    PD+     ++    
Sbjct: 443 TLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVNTFNRIFELVITPDDRFCGCLLNV-- 500

Query: 323 ALGMTEAAQNLENKMIAMKENSGKKL 348
              MT+      +K++   E +  KL
Sbjct: 501 ---MTQTPNEELSKLVKCAERANPKL 523


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 142/309 (45%), Gaps = 2/309 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA  L + M   G KP V  Y  L++   + G LDEA   +N+M  +  C+P+V T++I+
Sbjct: 262 QAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM-PLYGCQPNVITHNII 320

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           ++S     R+   E++LA+M   G   S VT+N +I+   + +           M + G 
Sbjct: 321 LRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG- 379

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  + N ++  +     +++  ++       G   DI T N L  +  + G  D   
Sbjct: 380 CMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAV 439

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +++ +  +   P ++TYN VI+   K G  E   E  ++M+ +G+KP+ ITY +L+   
Sbjct: 440 EILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGL 499

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G + +   I   +E   +      +N I+    +A    +  +    M E+ C P  
Sbjct: 500 GCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTK 559

Query: 312 ITFATMIQA 320
            T+  +I+ 
Sbjct: 560 ATYTILIEG 568



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 164/348 (47%), Gaps = 27/348 (7%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C+  +  +A+ + E++ + G  P V  Y  L+  Y +SG +D+A   +  M SV+
Sbjct: 148 LIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM-SVA 206

Query: 60  DCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIID------GY 110
              PDV TY+ +++S C      + +E +  +M     EC    +TY  +I+      G 
Sbjct: 207 ---PDVVTYNTILRSLCDSGKLKEAMEVLDRQMQR---ECYPDVITYTILIEATCNDSGV 260

Query: 111 GKAKKF-EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           G+A K  +EM           GC PD+ T N +I+     G +++  K+ N   L G + 
Sbjct: 261 GQAMKLLDEMRKK--------GCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQP 312

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++ T NI+ +S    G +     ++  M ++   P+VVT+NI+I    +   + +  +  
Sbjct: 313 NVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVL 372

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           +KM   G  PNS++Y  L+  + +   + +    L  + +     D   +N +++A  + 
Sbjct: 373 EKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD 432

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           G  +   E+   +  + C P  IT+ T+I     +G TE A  L  +M
Sbjct: 433 GKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEM 480



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/328 (21%), Positives = 137/328 (41%), Gaps = 32/328 (9%)

Query: 41  QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 100
           ++G L+E    +  M    D  PDV   + LI+   +  +     +I+  +   G     
Sbjct: 119 RNGELEEGLKFLERMIYQGDI-PDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDV 177

Query: 101 VTYNTIIDGYGKA----KKFEEME------------SSFSAMVESGG------------- 131
           +TYN +I GY K+    K  + +E            +   ++ +SG              
Sbjct: 178 ITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQ 237

Query: 132 --CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
             C+PD+ T   +I A  N   + +  K  +E    G K D+ T N+L     + G  D+
Sbjct: 238 RECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDE 297

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
               ++ M      P V+T+NI++ +    G     E     M  +G  P+ +T+  L++
Sbjct: 298 AIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILIN 357

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
              +  L+ +   +L ++     + ++  +N ++  + Q   +++  E    M  R C P
Sbjct: 358 FLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYP 417

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
           D +T+ T++ A    G  +AA  + N++
Sbjct: 418 DIVTYNTLLTALCKDGKADAAVEILNQL 445



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 102/248 (41%), Gaps = 20/248 (8%)

Query: 108 DGYGKAKKFEEMESS--FSAMVESG---------------GCHPDIFTLNSMISAYGNSG 150
           +G   ++ FEE  S+     +V +G               G  PD+    S+I  +  SG
Sbjct: 97  NGVNGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSG 156

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
              K  +        G   D+ T N+L   Y ++G  DK   V++ M      P VVTYN
Sbjct: 157 KTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMS---VAPDVVTYN 213

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            ++ +   +G +++  E   +   R   P+ ITY  L+ A      + +   +L ++   
Sbjct: 214 TILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKK 273

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
               D   +N +I+   + G +++  +    M    C P+ IT   ++++  + G    A
Sbjct: 274 GCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDA 333

Query: 331 QNLENKMI 338
           + L   M+
Sbjct: 334 ERLLADML 341



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E A+ L E M   GLKP +  Y+ L+   G  G +DEA    +DM+ +S  KP
Sbjct: 464 LTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLS-IKP 522

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
              TY+ ++    K  +       LA M   G + +  TY  +I+G
Sbjct: 523 SAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEG 568


>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 125/249 (50%), Gaps = 2/249 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+ KQ    + L + M+ DG +P+V  Y  ++ +YG++  L +A +    M+  + C+
Sbjct: 388 LLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQE-AGCE 446

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI    K    D+   +  +M   G+     TY+ +I+  GKA         
Sbjct: 447 PDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRL 506

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV+  GC P++ T N MI+    + N E   K Y +    G + D  T  I+ +  G
Sbjct: 507 FCRMVDE-GCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLG 565

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  ++   +   MQK+ + P    Y ++++ +GK+G+++K  E++  M   G+KPN  
Sbjct: 566 HCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVP 625

Query: 243 TYCSLVSAY 251
           T  SL+SA+
Sbjct: 626 TCNSLLSAF 634



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 133/267 (49%), Gaps = 1/267 (0%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           +K +   + D +TY+ +I    +  +F  I K+L +M   G + + VTYN II  YG+A 
Sbjct: 369 LKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRAN 428

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
             ++  + F  M E+G C PD  T  ++I  +  SG ++     Y +    G+  D  T 
Sbjct: 429 YLQDAVNVFKQMQEAG-CEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTY 487

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           +++    G+AG  +    +   M      P +VTYNI+I    KA + E   + ++ M+ 
Sbjct: 488 SVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQ 547

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G +P+ +TYC ++      G + + + I  +++  + + D P +  ++  +G++G+V+K
Sbjct: 548 SGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQK 607

Query: 295 MGELFLTMKERHCVPDNITFATMIQAY 321
             E +  M +    P+  T  +++ A+
Sbjct: 608 AWEWYHAMLKAGLKPNVPTCNSLLSAF 634



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 126/290 (43%), Gaps = 18/290 (6%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E+A  +F  M      P   VY  LV  +G+SG + +A+   + M   + 
Sbjct: 561 MEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLK-AG 619

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KP+V T + L+ +  + H+     ++L  M   G++ S  TY  ++     A+   +M 
Sbjct: 620 LKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQT-NDMG 678

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKADIQTLNILTK 179
                M  +G  HP    L S+ SA  N  N+ + M K+ +  +    ++    ++ +  
Sbjct: 679 FCCELMQVTG--HPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVD 736

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVT--------YNIVIETFGKA-GHIEKMEEYFK 230
              ++G+ ++   V +   ++  +P  V          N+ + + G A   + +   +F+
Sbjct: 737 FLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFR 796

Query: 231 -KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
            ++   G+ P+ I    +V+ + +   +     + + V++   I   PFF
Sbjct: 797 QQLLLSGVGPSRI---DIVTGWGRRSKVTGSSLVRQAVQDLLSIFSFPFF 843


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 157/335 (46%), Gaps = 3/335 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +  +P+     F  +L  GL     + + L+    ++    EA   +        C PDV
Sbjct: 120 RAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDV 179

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSF 123
           ++Y I++KS     +    +++L  M+  G  C  +AV YNT+IDG+ K     +    F
Sbjct: 180 FSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLF 239

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + MV+ G   PD+ T N +++A   +  ++K E    +    GV  D  T N L   Y  
Sbjct: 240 NEMVQRG-ISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSS 298

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + +   V   M  +   P VVT N ++ +  K G I+   + F  M  +G K +  +
Sbjct: 299 TGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFS 358

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  +++ Y+  G ++ +  +   + +  +  D+  FN +I AY + G +++   +F  M+
Sbjct: 359 YKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMR 418

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           E+   PD +T++T+I A   +G  + A    N+MI
Sbjct: 419 EQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMI 453



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 153/330 (46%), Gaps = 8/330 (2%)

Query: 8   KQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKP 63
           ++  QA  L  +M   G    P+   Y  ++  + + G +++A    N+M  + +S   P
Sbjct: 193 RKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGIS---P 249

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+ TY+ ++ +  K    D  E IL +M   G+     TYN++I GY    +++E     
Sbjct: 250 DLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKE-AVRV 308

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S  + S G  PD+ TLNS++++    G I+     ++   + G K DI +  I+   Y  
Sbjct: 309 SKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYAT 368

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G    +  + + M      P    +N++I+ + K G +++    F +M+ +G++P+ +T
Sbjct: 369 KGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVT 428

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y ++++A  + G +        Q+ +  V      ++ +I  +   GD+ K  +L L M 
Sbjct: 429 YSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMM 488

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            +   PD   F  +I     LG    AQN+
Sbjct: 489 NKGMRPDIGCFNFIINNLCKLGRVMDAQNI 518



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 154/328 (46%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  M+  G+ P +  Y  +V+A  ++  +D+A + +  M       PD +TY+ L
Sbjct: 234 KACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVD-KGVLPDNWTYNSL 292

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I   +   ++    ++  +M+  GI    VT N+++    K  K ++    F +M   G 
Sbjct: 293 IYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQ 352

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              DIF+   M++ Y   G +  + + +N     G+  D    N+L K+Y + GM D+  
Sbjct: 353 -KTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRAT 411

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + + M+++   P VVTY+ VI    + G ++   E F +M  +G+ P+  TY  L+  +
Sbjct: 412 IIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGF 471

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G ++K   ++ Q+ N  +  D   FN II+   + G V     +F         P+ 
Sbjct: 472 CTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNV 531

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
           + + T++  Y  +G  E A  + + M++
Sbjct: 532 MVYNTLMDGYCLVGKMENALRVFDVMVS 559



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 141/318 (44%), Gaps = 2/318 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M  L K  + + A  +F+ M   G K  +  Y  +++ Y   G L +     N M S   
Sbjct: 328 MASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLS-DG 386

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD + +++LIK+  K    D    I  EM   G+E   VTY+T+I    +  K ++  
Sbjct: 387 IAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAV 446

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F+ M++ G   P I T + +I  +   G++ K +    +    G++ DI   N +  +
Sbjct: 447 EKFNQMIDQG-VAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINN 505

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             + G     +++ DF       P V+ YN +++ +   G +E     F  M   G++PN
Sbjct: 506 LCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPN 565

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            + Y +LV+ Y K G I +  S+ R++ +  +   T  +N I+    QAG        F 
Sbjct: 566 VVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFH 625

Query: 301 TMKERHCVPDNITFATMI 318
            M E     D  T++ ++
Sbjct: 626 EMTESGIAMDRYTYSIVL 643



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/364 (21%), Positives = 152/364 (41%), Gaps = 39/364 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF +MLSDG+ P   ++  L+ AY + G+LD A    N+M+     +PDV TYS +I + 
Sbjct: 378 LFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMRE-QGVEPDVVTYSTVIAAL 436

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----- 130
            +  + D   +   +M   G+  S  TY+ +I G+       + +     M+  G     
Sbjct: 437 CRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDI 496

Query: 131 -----------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
                                        G HP++   N+++  Y   G +E   + ++ 
Sbjct: 497 GCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDV 556

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G++ ++     L   Y + G  D+  S+   +  +   P+   YNI++    +AG 
Sbjct: 557 MVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGR 616

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
               +  F +M   G+  +  TY  ++    K     +   + +++   +V +D    N 
Sbjct: 617 TVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNI 676

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +I+   Q   VE+  +LF ++     VP  +T++ M+      G+ E A ++ + M    
Sbjct: 677 MIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSM---- 732

Query: 342 ENSG 345
           EN+G
Sbjct: 733 ENAG 736



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 128/281 (45%), Gaps = 6/281 (2%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P ++TY IL+  CT+ HR  L      ++   G+    +  + ++ G  +AK+  E    
Sbjct: 106 PTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAEALDI 165

Query: 123 FSAMVESGGCHPDIFT----LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               +   GC PD+F+    L S+ S    SG  +++ +   E   + +   +   N + 
Sbjct: 166 LLHRMPHLGCVPDVFSYCIVLKSLCSDR-KSGQADELLRMMAEGGAVCLPNAV-AYNTVI 223

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + + G  +K   + + M +R   P + TYN V+    KA  ++K E   ++M  +G+ 
Sbjct: 224 DGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVL 283

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++ TY SL+  YS  G   +   + +++ +  ++ D    N ++++  + G ++   ++
Sbjct: 284 PDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDV 343

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           F +M  +    D  ++  M+  Y   G       L N M++
Sbjct: 344 FDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLS 384



 Score = 42.7 bits (99), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 6/192 (3%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A + F  M   G+      Y+ ++    ++   DEA     ++ ++ + K D+ T +I+I
Sbjct: 620 AKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAM-NVKIDITTLNIMI 678

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               +  R +  + + A +S  G+  S VTY+ ++    K    EE +  FS+M E+ GC
Sbjct: 679 AGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSM-ENAGC 737

Query: 133 -HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P+   LN ++        I +   + ++ +      D  T  +L   +   G     R
Sbjct: 738 EQPNSQLLNHVVRELLEKREIVRAGTYLSKIDERSFSLDHSTTTLLIDLFSSKG---TCR 794

Query: 192 SVMDFMQKRFFF 203
             + F+  ++ F
Sbjct: 795 EHIRFLPAKYHF 806


>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 125/249 (50%), Gaps = 2/249 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+ KQ    + L + M+ DG +P+V  Y  ++ +YG++  L +A +    M+  + C+
Sbjct: 388 LLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQE-AGCE 446

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI    K    D+   +  +M   G+     TY+ +I+  GKA         
Sbjct: 447 PDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRL 506

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV+  GC P++ T N MI+    + N E   K Y +    G + D  T  I+ +  G
Sbjct: 507 FCRMVDE-GCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLG 565

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  ++   +   MQK+ + P    Y ++++ +GK+G+++K  E++  M   G+KPN  
Sbjct: 566 HCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVP 625

Query: 243 TYCSLVSAY 251
           T  SL+SA+
Sbjct: 626 TCNSLLSAF 634



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 133/267 (49%), Gaps = 1/267 (0%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           +K +   + D +TY+ +I    +  +F  I K+L +M   G + + VTYN II  YG+A 
Sbjct: 369 LKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRAN 428

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
             ++  + F  M E+G C PD  T  ++I  +  SG ++     Y +    G+  D  T 
Sbjct: 429 YLQDAVNVFKQMQEAG-CEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTY 487

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           +++    G+AG  +    +   M      P +VTYNI+I    KA + E   + ++ M+ 
Sbjct: 488 SVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQ 547

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G +P+ +TYC ++      G + + + I  +++  + + D P +  ++  +G++G+V+K
Sbjct: 548 SGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQK 607

Query: 295 MGELFLTMKERHCVPDNITFATMIQAY 321
             E +  M +    P+  T  +++ A+
Sbjct: 608 AWEWYHAMLKAGLKPNVPTCNSLLSAF 634



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 126/290 (43%), Gaps = 18/290 (6%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E+A  +F  M      P   VY  LV  +G+SG + +A+   + M   + 
Sbjct: 561 MEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLK-AG 619

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KP+V T + L+ +  + H+     ++L  M   G++ S  TY  ++     A+   +M 
Sbjct: 620 LKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQT-NDMG 678

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKADIQTLNILTK 179
                M  +G  HP    L S+ SA  N  N+ + M K+ +  +    ++    ++ +  
Sbjct: 679 FCCELMQVTG--HPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVD 736

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVT--------YNIVIETFGKA-GHIEKMEEYFK 230
              ++G+ ++   V +   ++  +P  V          N+ + + G A   + +   +F+
Sbjct: 737 FLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFR 796

Query: 231 -KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
            ++   G+ P+ I    +V+ + +   +     + + V++   I   PFF
Sbjct: 797 QQLLLSGVGPSRI---DIVTGWGRRSKVTGSSLVRQAVQDLLSIFSFPFF 843


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 155/325 (47%), Gaps = 8/325 (2%)

Query: 20  MLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTYSILIKSC 75
           M  DG    P V  Y+ +++ + + G LD+ +ST N+M  K +S   P+V TY+ +I + 
Sbjct: 1   MADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRIS---PNVVTYNSIIAAL 57

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K    D   ++L  M   G+    +TYN+I+ G+  + + +E    F   + S G  PD
Sbjct: 58  CKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKE-AIVFLKKMRSDGVEPD 116

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T NS++     +G   +  K ++     G+K DI T   L + Y   G   +M  ++D
Sbjct: 117 VVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLD 176

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M +    P    ++I++  + K   +E+    F KM+ +G+ PN++TY +++    K+G
Sbjct: 177 LMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSG 236

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +        Q+ +  +  D+  +N +I +       EK  ELFL M +R      I F 
Sbjct: 237 RVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFN 296

Query: 316 TMIQAYNALGMTEAAQNLENKMIAM 340
           ++I ++   G    +  L + M+ +
Sbjct: 297 SIIDSHCKEGRVIESVKLFDLMVRI 321



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 2/235 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           QP++A +  + M SDG++P V  Y +L+    ++G   EA    + M      KPD+ TY
Sbjct: 97  QPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTK-RGLKPDITTY 155

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
             L++          +  +L  M   GI  +   ++ ++  Y K +K EE    FS M +
Sbjct: 156 GTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ 215

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             G +P+  T  ++I     SG +E    ++ +    G++ D    N L  S      ++
Sbjct: 216 Q-GLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWE 274

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           K   +   M  R    + + +N +I++  K G + +  + F  M   G+KP+ IT
Sbjct: 275 KAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKPDIIT 329



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 2/159 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L ++M+ +G+ P+  V++ LV AY +   ++EA    + M+      P+  TY  +I   
Sbjct: 174 LLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQ-QGLNPNAVTYGTVIDVL 232

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R +       +M   G+   ++ YN++I       K+E+ E  F  M++ G C   
Sbjct: 233 CKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLST 292

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           IF  NS+I ++   G + +  K ++    +GVK DI TL
Sbjct: 293 IF-FNSIIDSHCKEGRVIESVKLFDLMVRIGVKPDIITL 330



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 2/135 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            K ++ E+A L+F  M   GL P+   Y  ++    +SG +++A      M      +PD
Sbjct: 198 AKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMID-EGLRPD 256

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+ LI S   F +++  E++  EM   GI  S + +N+IID + K  +  E    F 
Sbjct: 257 SIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFD 316

Query: 125 AMVESGGCHPDIFTL 139
            MV   G  PDI TL
Sbjct: 317 LMVRI-GVKPDIITL 330


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 165/382 (43%), Gaps = 48/382 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  LF  M    + P +  Y  +++ +  SG   +A   + +M       P
Sbjct: 263 LWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLE-RKINP 321

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T+S LI +  K  +F   E++  EM    I  S VTY+++IDG+ K  + +  E  F
Sbjct: 322 DVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMF 381

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             +  + GC PDI T N++I+ Y  +  ++   K  +E    G+ A+  T   L   + +
Sbjct: 382 -YLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQ 440

Query: 184 AG------------------------------------------MYDKM-RSVMDFMQKR 200
            G                                          M+  M +S MD    R
Sbjct: 441 VGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASR 500

Query: 201 FFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
            F    P V TYNI+I      G   + EE +++M HRG+ P++ITY S++    K   +
Sbjct: 501 PFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 560

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            +   +   + +     D   FN +I+ Y +AG V+   ELF  M +R  V D IT+ T+
Sbjct: 561 DEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITL 620

Query: 318 IQAYNALGMTEAAQNLENKMIA 339
           I  +  +   + A ++  +MI+
Sbjct: 621 IYGFRKVDNIDGALDIFQEMIS 642



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 146/320 (45%), Gaps = 17/320 (5%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ ML   + PS   Y++++  + +   LD A      +     C PD+ T++ L
Sbjct: 341 EAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFY-LTPTKGCSPDIITFNTL 399

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    +  R D   K+L EM+  G+  + +TY T+I G+ +       +     M+ SG 
Sbjct: 400 IAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGV 459

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWY-------------NEFNLMGVKADIQTLNILT 178
           C P++ T N+++    ++G ++   + +               FN  GV+ D+QT NIL 
Sbjct: 460 C-PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFN--GVEPDVQTYNILI 516

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                 G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   
Sbjct: 517 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFS 576

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ +T+ +L++ Y KAG++     +  ++    ++ D   +  +I  + +  +++   ++
Sbjct: 577 PDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDI 636

Query: 299 FLTMKERHCVPDNITFATMI 318
           F  M      PD IT   M+
Sbjct: 637 FQEMISSGVYPDTITIRNML 656



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 5/316 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G  P+V  +  L+        + EA    + M     CKP+V T++ L+    +  R   
Sbjct: 146 GFHPTVVTFNTLLHGLCVEDRISEALDLFHQM-----CKPNVVTFTTLMNGLCREGRVVE 200

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +L  M   G++ + +TY TI+DG  K        +    M E     P++   N++I
Sbjct: 201 AVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTII 260

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 G        + E     +  DI T N +   +  +G +     ++  M +R   
Sbjct: 261 DGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKIN 320

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVT++ +I  F K G   + EE + +M  R + P+++TY S++  + K   +   + +
Sbjct: 321 PDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHM 380

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
                      D   FN +I+ Y +A  V+   +L   M E   V + IT+ T+I  +  
Sbjct: 381 FYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQ 440

Query: 324 LGMTEAAQNLENKMIA 339
           +G   AAQ+L  +MI+
Sbjct: 441 VGDLNAAQDLLQEMIS 456



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 146/317 (46%), Gaps = 16/317 (5%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF----HRF 81
           KP+V  +T L++   + G + EA + ++ M      +P+  TY  ++    K        
Sbjct: 179 KPNVVTFTTLMNGLCREGRVVEAVALLDRMLE-DGLQPNQITYGTIVDGMCKMGDTVSAL 237

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           +L+ K + E+S+  I  + V YNTIIDG  K  +  +  + F  M E     PDI T N 
Sbjct: 238 NLLRK-MEEVSH--IIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKE-IFPDIVTYNC 293

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           MI+ +  SG     E+   E     +  D+ T + L  ++ + G + +   + D M  R 
Sbjct: 294 MINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRS 353

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P+ VTY+ +I+ F K   ++  E  F     +G  P+ IT+ +L++ Y +A  +    
Sbjct: 354 IIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGI 413

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +L ++  + ++ +T  +  +I  + Q GD+    +L   M      P+ +T  T++   
Sbjct: 414 KLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGL 473

Query: 322 -------NALGMTEAAQ 331
                  +AL M +A Q
Sbjct: 474 CDNGKLKDALEMFKAMQ 490



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 151/367 (41%), Gaps = 49/367 (13%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C++    +A  L + ML DGL+P+   Y  +V    + G    A + +  M+ VS
Sbjct: 188 LMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVS 247

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P+V  Y+ +I    K  R      +  EM    I    VTYN +I+G+  + ++ + 
Sbjct: 248 HIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDA 307

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE------------------ 161
           E     M+E    +PD+ T +++I+A+   G   + E+ Y+E                  
Sbjct: 308 EQLLQEMLER-KINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMID 366

Query: 162 --------------FNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
                         F L    G   DI T N L   Y RA   D    ++  M +     
Sbjct: 367 GFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVA 426

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
             +TY  +I  F + G +   ++  ++M   G+ PN +T  +L+      G +     + 
Sbjct: 427 NTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMF 486

Query: 265 RQVENSDVILDT--PF---------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           + ++ S + +D   PF         +N +I      G   +  EL+  M  R  VPD IT
Sbjct: 487 KAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTIT 546

Query: 314 FATMIQA 320
           +++MI  
Sbjct: 547 YSSMIDG 553



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 129/284 (45%), Gaps = 13/284 (4%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   + A  +F +  + G  P +  +  L++ Y ++  +D+    +++M       
Sbjct: 367 GFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAG-LV 425

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            +  TY+ LI    +    +  + +L EM   G+  + VT NT++DG     K ++    
Sbjct: 426 ANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEM 485

Query: 123 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
           F AM +S           G  PD+ T N +I    N G   + E+ Y E    G+  D  
Sbjct: 486 FKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTI 545

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T + +     +    D+   + D M  + F P VVT+N +I  + KAG ++   E F +M
Sbjct: 546 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEM 605

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
             RG+  ++ITY +L+  + K   I     I +++ +S V  DT
Sbjct: 606 GQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDT 649



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/343 (20%), Positives = 138/343 (40%), Gaps = 44/343 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKS 74
           LF  M+     PSV  +  L+    + G  D   S    M+ +   C  + Y+++IL+K 
Sbjct: 68  LFGYMVRSRPLPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPC--NAYSFTILMKC 125

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
                +         +++ LG   + VT+NT++ G     +  E    F  M     C P
Sbjct: 126 FCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM-----CKP 180

Query: 135 DIFTLNSMISAYGNSGNIE-----------------------------KMEKWYNEFNLM 165
           ++ T  ++++     G +                              KM    +  NL+
Sbjct: 181 NVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 240

Query: 166 -------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
                   +  ++   N +     + G +    ++   MQ++  FP +VTYN +I  F  
Sbjct: 241 RKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCI 300

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
           +G     E+  ++M  R + P+ +T+ +L++A+ K G   + + +  ++    +I  T  
Sbjct: 301 SGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVT 360

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           ++ +I  + +   ++    +F     + C PD ITF T+I  Y
Sbjct: 361 YSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGY 403



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 112/263 (42%), Gaps = 14/263 (5%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + K+ +    L   M   GL  +   YT L+  + Q G L+ A   + +M S   C P+V
Sbjct: 405 RAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVC-PNV 463

Query: 66  YTYSILIKS-CTKFHRFDLIE----------KILAEMSYLGIECSAVTYNTIIDGYGKAK 114
            T + L+   C      D +E           I A   + G+E    TYN +I G     
Sbjct: 464 VTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEG 523

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           KF E E  +  M   G   PD  T +SMI        +++  + ++         D+ T 
Sbjct: 524 KFLEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTF 582

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N L   Y +AGM D    +   M +R      +TY  +I  F K  +I+   + F++M  
Sbjct: 583 NTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMIS 642

Query: 235 RGMKPNSITYCSLVSA-YSKAGL 256
            G+ P++IT  ++++  +SK  L
Sbjct: 643 SGVYPDTITIRNMLTGLWSKEEL 665


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 159/341 (46%), Gaps = 10/341 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA----FSTINDMKSV 58
           +L + ++ E    +   M++ G++P+  + TA +    + G   EA    F T+N    V
Sbjct: 406 LLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGV 465

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
                ++ T + LI    +        K++  M   GIE  ++TYN +I G  K  K EE
Sbjct: 466 -----NLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEE 520

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  M   G   PD+FT N+++ AY N G +E+     ++    G++ DI +   + 
Sbjct: 521 AIKLHGDMTRRG-FKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTII 579

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + +A    K +  +  +  R   P V  YN +I  +G+ G I    +  + MK  G++
Sbjct: 580 DGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQ 639

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P ++TY SL+     AGL+ +  +I  Q   ++V L    +  +I  Y + G + +    
Sbjct: 640 PTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAY 699

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           F  M+ R   P+ +T+ T++ AY+  G +E A  L ++M+ 
Sbjct: 700 FEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVG 740



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 142/284 (50%), Gaps = 2/284 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ + + ML+ G++     Y  ++    +   ++EA     DM +    KPD++T++ 
Sbjct: 484 KEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDM-TRRGFKPDLFTFNT 542

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +     + +    +L +M   G++   V+Y TIIDG+ KAK   + +   + +++ G
Sbjct: 543 LLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRG 602

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++F  N++I  YG +G+I             G++    T   L      AG+ ++ 
Sbjct: 603 -LKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEA 661

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           +++    ++      V+ Y I+I+ + K G + +   YF++M+ RG+ PN +TY +L+ A
Sbjct: 662 KTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYA 721

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           YSK+G   +   +  ++  S VI D   +  +I+   +   ++K
Sbjct: 722 YSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDK 765



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 158/404 (39%), Gaps = 77/404 (19%)

Query: 10  PEQASLL-----FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           P Q SL      F V+ S G  PS+    A + A  ++G LD A    ++M+   +   +
Sbjct: 161 PAQGSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALN 220

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            Y+Y+ +IK+  K  + D   ++LAE+   G++ + VTYN ++D   K+ + EE      
Sbjct: 221 EYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEE-AFRLK 279

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +E GG  P + T   +I+         ++     E   +GV  +    N L   + R 
Sbjct: 280 GRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRK 339

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK-------------- 230
           G   +   + D M  +   PT VTYN++ +   K G +E+ E   +              
Sbjct: 340 GHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLF 399

Query: 231 ----------------------KMKHRGMKPNS--ITYC--------------------- 245
                                 +M  RGM+PN   +T C                     
Sbjct: 400 NTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTL 459

Query: 246 ------------SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
                       +L+    +   + +   +++ + N  + LD+  +N +I    +   +E
Sbjct: 460 NKGLGVNLATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKME 519

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +  +L   M  R   PD  TF T++ AY  LG  E   +L ++M
Sbjct: 520 EAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQM 563



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/365 (19%), Positives = 155/365 (42%), Gaps = 36/365 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + ++  +  ++ + M   G+ P+  +Y  L+  + + G   +A    ++M  +   KP
Sbjct: 301 LARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEM-VLKKMKP 359

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG-YGKAKKFEEMESS 122
              TY+++ K+  K    +  E+IL +M  +G+      +NT++     + ++ E + S 
Sbjct: 360 TAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSI 419

Query: 123 FSAMVESG----------------------------------GCHPDIFTLNSMISAYGN 148
            + MV  G                                  G   ++ T N++I     
Sbjct: 420 TNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCE 479

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
              +++  K        G++ D  T NI+ +   +    ++   +   M +R F P + T
Sbjct: 480 GKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFT 539

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           +N ++  +   G +E+      +MK  G++P+ ++Y +++  + KA  I K    L ++ 
Sbjct: 540 FNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELM 599

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
           +  +  +   +N +I  YG+ GD+    +   TMK     P N+T+ +++      G+ E
Sbjct: 600 DRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVE 659

Query: 329 AAQNL 333
            A+ +
Sbjct: 660 EAKTI 664



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 121/255 (47%), Gaps = 4/255 (1%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK    E+A  L   M   G KP +  +  L+ AY   G ++E F  ++ MK+ 
Sbjct: 507 IMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKT- 565

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              +PD+ +Y  +I    K       ++ L E+   G++ +   YN +I GYG+      
Sbjct: 566 EGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISG 625

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
              +   M +S G  P   T  S++    ++G +E+ +  +++     V   +    I+ 
Sbjct: 626 AIDAVETM-KSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMI 684

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           + Y + G   +  +  + M+ R   P  +TY  ++  + K+G+ E+  + F +M   G+ 
Sbjct: 685 QGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVI 744

Query: 239 PNSITYCSLVSAYSK 253
           P++ITY +L++  S+
Sbjct: 745 PDNITYGTLIARCSE 759



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 103/216 (47%), Gaps = 1/216 (0%)

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN-LMGVKADIQTLNILTKSYGRA 184
           ++ S G  P I T N+ + A   +G ++   + ++E      V  +  +   + K+  +A
Sbjct: 175 VLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKA 234

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D    ++  + +    PTVVTYN++++   K+G +E+      +M+  GM P+ +T+
Sbjct: 235 GKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTF 294

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L++  ++     +V  +L+++E   V  +   +N +I  + + G   +   LF  M  
Sbjct: 295 GILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVL 354

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           +   P  +T+  + +A    G  E A+ +   M+++
Sbjct: 355 KKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSI 390



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 116/264 (43%), Gaps = 19/264 (7%)

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           +S  G   S  T N  ++   +A + +     F  M ES     + ++  +MI A   +G
Sbjct: 176 LSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAG 235

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            ++   +   E    G++  + T N+L  +  ++G  ++   +   M++    P+VVT+ 
Sbjct: 236 KVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFG 295

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG-----LIMKVDSILR 265
           I+I    +     ++    ++M+  G+ PN + Y  L+  + + G     L +  + +L+
Sbjct: 296 ILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLK 355

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE----RHCVPDNITFATMIQAY 321
           +++ + V      +N I  A  + G++E+   +   M       HC   N   A ++Q  
Sbjct: 356 KMKPTAVT-----YNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRT 410

Query: 322 NALGMTEAAQNLENKMI--AMKEN 343
             L   E+  ++ N+M+   M+ N
Sbjct: 411 RRL---ESVVSITNEMVTRGMRPN 431



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/206 (20%), Positives = 91/206 (44%), Gaps = 2/206 (0%)

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
           F +++ I++    G++ +    +   +  G    I+T N   ++  RAG  D  R V D 
Sbjct: 152 FLIHTFITSPAQ-GSLCRAADAFRVLSSRGAPPSIKTCNAFLEALVRAGQLDAAREVFDE 210

Query: 197 MQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
           M++ R       +Y  +I+   KAG ++   E   ++   G++P  +TY  L+ A  K+G
Sbjct: 211 MRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSG 270

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   +  ++E   +      F  +I+   +     ++G +   M++    P+ + + 
Sbjct: 271 RVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYN 330

Query: 316 TMIQAYNALGMTEAAQNLENKMIAMK 341
            +I  +   G    A  L ++M+  K
Sbjct: 331 ELIGWHCRKGHCSQALRLFDEMVLKK 356



 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 3/107 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  +A   FE M S G+ P+   YT L+ AY +SG  +EA    ++M   S   
Sbjct: 686 GYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVG-SGVI 744

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
           PD  TY  LI  C++ +  D      AE+S   +      YN + +G
Sbjct: 745 PDNITYGTLIARCSEVNSLDKDIGHTAELSSGALTKDDRMYNILSNG 791


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 164/346 (47%), Gaps = 18/346 (5%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  Q E+AS L E MLS G  P+V  Y  ++    + G + +A   ++ M +  +  
Sbjct: 281 GYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVN-KNLM 339

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+ +Y+ LI   T+         + AE+ Y  +  S VTYNT+IDG  +    +     
Sbjct: 340 PDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRL 399

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M++ G   PD+FT  + +  +   GN+   ++ ++E    G++ D      +T+  G
Sbjct: 400 KDEMIKHGP-DPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPD--RFAYITRIVG 456

Query: 183 RAGMYDKMRS--VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
              + D  ++  + + M  R F P ++TYN+ I+   K G++++  E  KKM + G+ P+
Sbjct: 457 ELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPD 516

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY S++ A+  AG + K  ++  ++ +  +      +  +I +Y   G ++     F 
Sbjct: 517 HVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFF 576

Query: 301 TMKERHCVPDNITFATMI----------QAYNALGMTEAAQNLENK 336
            M E+   P+ IT+  +I          QAYN     +A     NK
Sbjct: 577 EMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNK 622



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 154/361 (42%), Gaps = 35/361 (9%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  ++ VM+  G+ P+V  Y  ++ ++ + G++ EA   +  M+++  C P+  TY++L+
Sbjct: 186 AREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMG-CSPNDVTYNVLV 244

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
              +     +  ++++ +M  LG+E S  TY+ +I GY +  + EE       M+  G  
Sbjct: 245 NGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAV 304

Query: 133 H----------------------------------PDIFTLNSMISAYGNSGNIEKMEKW 158
                                              PD+ + N++I  Y   GNI +    
Sbjct: 305 PTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLL 364

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
           + E     +   + T N L     R G  D    + D M K    P V T+   +  F K
Sbjct: 365 FAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCK 424

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
            G++   +E F +M +RG++P+   Y + +    K G   K   +  ++       D   
Sbjct: 425 MGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLIT 484

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +N  I    + G++++  EL   M     VPD++T+ ++I A+   G    A+ L  +M+
Sbjct: 485 YNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEML 544

Query: 339 A 339
           +
Sbjct: 545 S 545



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 155/374 (41%), Gaps = 37/374 (9%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G CK  +   A  L +VM++  L P +  Y  L+  Y + G + EAF    +++  S
Sbjct: 313 IMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRS 372

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P V TY+ LI    +    D+  ++  EM   G +    T+ T + G+ K       
Sbjct: 373 -LAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMA 431

Query: 120 ESSFSAMVESG----------------------------------GCHPDIFTLNSMISA 145
           +  F  M+  G                                  G  PD+ T N  I  
Sbjct: 432 KELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDG 491

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
               GN+++  +   +    G+  D  T   +  ++  AG   K R++   M  +  FP+
Sbjct: 492 LHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPS 551

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           VVTY ++I ++   G ++    +F +M  +G+ PN ITY +L++   K   + +  +   
Sbjct: 552 VVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFA 611

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           +++   +  +   +  +I+     G  ++   L+  M +R   PD+ T  ++++  N   
Sbjct: 612 EMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNKDY 671

Query: 326 MTEAAQNLENKMIA 339
                ++LEN + A
Sbjct: 672 KLHVVRHLENVIAA 685



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 144/321 (44%), Gaps = 18/321 (5%)

Query: 27  PSVD-VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF---- 81
           PSV  +   L+  Y +  LL++       M S     PDV       K+C +  R     
Sbjct: 128 PSVKLILDLLLWIYVKKSLLEKCLLVFYKMVS-KGLLPDV-------KNCNRVLRLLRDR 179

Query: 82  ----DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
               D+  ++   M   GI  + VTYNT++D + K    +E       M ++ GC P+  
Sbjct: 180 DNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQM-QAMGCSPNDV 238

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T N +++   +SG +E+ ++   +   +G++  + T + L + Y   G  ++   + + M
Sbjct: 239 TYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEM 298

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
             R   PTVVTYN ++    K G +    +    M ++ + P+ ++Y +L+  Y++ G I
Sbjct: 299 LSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNI 358

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            +   +  ++    +      +N +I    + GD++    L   M +    PD  TF T 
Sbjct: 359 GEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTF 418

Query: 318 IQAYNALGMTEAAQNLENKMI 338
           ++ +  +G    A+ L ++M+
Sbjct: 419 VRGFCKMGNLPMAKELFDEML 439



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 146/332 (43%), Gaps = 20/332 (6%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV--SDCKPDVYTYSILIKSCTKFHRF 81
           G K S   Y+ ++    ++GL+  A+  +  + SV   +   DV + S +     K    
Sbjct: 76  GFKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKL-IL 134

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGY---------------GKAKKFEEMESSFSAM 126
           DL+  I  + S L  +C  V Y  +  G                 +    +     ++ M
Sbjct: 135 DLLLWIYVKKSLLE-KCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVM 193

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           VE G C P + T N+M+ ++   G +++  +   +   MG   +  T N+L      +G 
Sbjct: 194 VECGIC-PTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGE 252

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            ++ + ++  M +     +V TY+ +I  + + G IE+     ++M  RG  P  +TY +
Sbjct: 253 MEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNT 312

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++    K G +     +L  + N +++ D   +N +I  Y + G++ +   LF  ++ R 
Sbjct: 313 IMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRS 372

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             P  +T+ T+I     LG  + A  L+++MI
Sbjct: 373 LAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMI 404



 Score = 45.1 bits (105), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 74/167 (44%), Gaps = 1/167 (0%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF-GKAGHIEKMEEYFKKM 232
           L++L   Y +  + +K   V   M  +   P V   N V+     +  +I+   E +  M
Sbjct: 134 LDLLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVM 193

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
              G+ P  +TY +++ ++ K G++ +   +L Q++      +   +N +++    +G++
Sbjct: 194 VECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEM 253

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           E+  EL   M          T+  +I+ Y   G  E A  L  +M++
Sbjct: 254 EQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLS 300


>gi|255576798|ref|XP_002529286.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531275|gb|EEF33118.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 157/322 (48%), Gaps = 3/322 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M  +GK   P +A  ++  +  + +K +V +  +++S   +SG  D +    + MK  + 
Sbjct: 153 MKFMGKSLNPAKALEIYNSIADESVKNNVFICNSVLSCLVRSGKFDISLKLFHKMKQ-NG 211

Query: 61  CKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             PD  TYS L+  C K    +      + E+ Y G++   V Y TI+       + EE 
Sbjct: 212 LTPDTITYSTLLSGCIKAKDGYSKTLDFVQELKYNGLQMDTVIYGTILAVCASHNRCEEA 271

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           ES FS M   G   P++F  +S+++AY +SGN +K E+   +   +G+  +      L K
Sbjct: 272 ESYFSQMKNEGHL-PNVFHYSSLLNAYASSGNYKKAEELVQDMKSLGLVPNKVIWTTLLK 330

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y R G+++K + ++  ++   +    + Y ++++   KAG +++   +F +MK + +K 
Sbjct: 331 VYVRGGLFEKSQQLLLELETLGYAEDEMPYCLLMDGLSKAGRVDEARSFFDEMKEKNVKS 390

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +   Y  ++SAY +  L+ +   + ++ E      D    N ++ AY +AGD+E + +  
Sbjct: 391 DGYAYSIMISAYCRGRLLEEAKQLAKEFEAKYDKYDVVILNTMLCAYCRAGDMESVMQTM 450

Query: 300 LTMKERHCVPDNITFATMIQAY 321
             M E    P   TF  +I+ +
Sbjct: 451 RKMDELAISPSYCTFHILIKYF 472



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 137/330 (41%), Gaps = 37/330 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + +  S LF+ M     K SV  YT+ +   G+S    +A    N +   S  K 
Sbjct: 122 LGKQSRWQDLSKLFDWMQQHS-KISVSSYTSYMKFMGKSLNPAKALEIYNSIADES-VKN 179

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V+  + ++    +  +FD+  K+  +M   G+    +TY+T++ G  KAK        F
Sbjct: 180 NVFICNSVLSCLVRSGKFDISLKLFHKMKQNGLTPDTITYSTLLSGCIKAKDGYSKTLDF 239

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              ++  G   D     ++++   +    E+ E ++++                      
Sbjct: 240 VQELKYNGLQMDTVIYGTILAVCASHNRCEEAESYFSQ---------------------- 277

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
                        M+     P V  Y+ ++  +  +G+ +K EE  + MK  G+ PN + 
Sbjct: 278 -------------MKNEGHLPNVFHYSSLLNAYASSGNYKKAEELVQDMKSLGLVPNKVI 324

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +L+  Y + GL  K   +L ++E      D   +  ++    +AG V++    F  MK
Sbjct: 325 WTTLLKVYVRGGLFEKSQQLLLELETLGYAEDEMPYCLLMDGLSKAGRVDEARSFFDEMK 384

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           E++   D   ++ MI AY    + E A+ L
Sbjct: 385 EKNVKSDGYAYSIMISAYCRGRLLEEAKQL 414



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 3/238 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A   F  M ++G  P+V  Y++L++AY  SG   +A   + DMKS+    P+   ++ 
Sbjct: 269 EEAESYFSQMKNEGHLPNVFHYSSLLNAYASSGNYKKAEELVQDMKSLG-LVPNKVIWTT 327

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+K   +   F+  +++L E+  LG     + Y  ++DG  KA + +E  S F  M E  
Sbjct: 328 LLKVYVRGGLFEKSQQLLLELETLGYAEDEMPYCLLMDGLSKAGRVDEARSFFDEMKEKN 387

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
               D +  + MISAY     +E+ ++   EF     K D+  LN +  +Y RAG  + +
Sbjct: 388 -VKSDGYAYSIMISAYCRGRLLEEAKQLAKEFEAKYDKYDVVILNTMLCAYCRAGDMESV 446

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
              M  M +    P+  T++I+I+ F K        +  + M  +G +P     CS++
Sbjct: 447 MQTMRKMDELAISPSYCTFHILIKYFCKQKLYLLAYQTMEDMHRKGHQPEE-ELCSML 503



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 110/237 (46%), Gaps = 4/237 (1%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82
           +GL+    +Y  +++        +EA S  + MK+     P+V+ YS L+ +      + 
Sbjct: 246 NGLQMDTVIYGTILAVCASHNRCEEAESYFSQMKNEGHL-PNVFHYSSLLNAYASSGNYK 304

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI-FTLNS 141
             E+++ +M  LG+  + V + T++  Y +   FE+ +     +   G    ++ + L  
Sbjct: 305 KAEELVQDMKSLGLVPNKVIWTTLLKVYVRGGLFEKSQQLLLELETLGYAEDEMPYCL-- 362

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           ++     +G +++   +++E     VK+D    +I+  +Y R  + ++ + +    + ++
Sbjct: 363 LMDGLSKAGRVDEARSFFDEMKEKNVKSDGYAYSIMISAYCRGRLLEEAKQLAKEFEAKY 422

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
               VV  N ++  + +AG +E + +  +KM    + P+  T+  L+  + K  L +
Sbjct: 423 DKYDVVILNTMLCAYCRAGDMESVMQTMRKMDELAISPSYCTFHILIKYFCKQKLYL 479


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 162/336 (48%), Gaps = 2/336 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K   +A  L+  M +  + P+V  YT L+  +   G L EA + +N+MK + +  P
Sbjct: 219 LCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMK-LKNINP 277

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DVYT+SILI +  K  +    + +LA M    ++   VTYN+++DGY    + +  +  F
Sbjct: 278 DVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVF 337

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           ++M +SG   P + +   MI     +  +++    + E     V  +  T N L     +
Sbjct: 338 NSMAQSG-VTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCK 396

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G    +  ++D M+ R     V+TY+ +I+   K  H+++    FKKM  + ++P+  T
Sbjct: 397 SGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYT 456

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+    K G +     + + +      LD   +  +IS + +AG  ++   L   M+
Sbjct: 457 YTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKME 516

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +  C+P+ ITF  +I A       + A+ L  +MIA
Sbjct: 517 DNGCIPNAITFDIIICALFEKDENDKAEKLLREMIA 552



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 5/330 (1%)

Query: 12  QASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q +L F V+   L  G  P V   T L+      G + +A    +D+ ++ + + D  +Y
Sbjct: 119 QITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVAL-EFQLDRISY 177

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
             LI    K        +++  +    I+   V YN IID   K K   E  + +S M  
Sbjct: 178 GTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEM-N 236

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           +   +P++ T  ++I  +   G + +     NE  L  +  D+ T +IL  + G+ G   
Sbjct: 237 AKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMK 296

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
             + V+  M K +  P VVTYN +++ +     ++  +  F  M   G+ P   +Y  ++
Sbjct: 297 AAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMI 356

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               K  ++ +  S+  ++++ +VI +T  FN +I    ++G +  + +L   M++R  +
Sbjct: 357 DGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQL 416

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMI 338
            D IT++++I A       + A  L  KMI
Sbjct: 417 ADVITYSSLIDALCKNCHLDQAIALFKKMI 446



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 108/227 (47%), Gaps = 2/227 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  +F  M   G+ P V  YT ++    ++ ++DEA S   +MK   +  P+  T++ 
Sbjct: 331 KHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKH-KNVIPNTITFNS 389

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  R   +  ++ +M         +TY+++ID   K    ++  + F  M+ + 
Sbjct: 390 LIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMI-TQ 448

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD++T   +I      G ++  ++ +    + G   DI+T  ++   + +AG++D+ 
Sbjct: 449 EIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEA 508

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            +++  M+     P  +T++I+I    +    +K E+  ++M  RG+
Sbjct: 509 LALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIARGL 555



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 88/204 (43%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P  F  N+++S+                 +  G+ +D+ TLNIL   +   G      SV
Sbjct: 67  PPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSV 126

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           +  + KR + P V+T   +I+     G ++K  ++   +     + + I+Y +L++   K
Sbjct: 127 LATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCK 186

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
            G       ++R +E   +  D   +N II +  +   V +   L+  M  +   P+ +T
Sbjct: 187 IGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVT 246

Query: 314 FATMIQAYNALGMTEAAQNLENKM 337
           + T+I  +  +G    A  L N+M
Sbjct: 247 YTTLIYGFCIMGCLIEAVALLNEM 270



 Score = 41.2 bits (95), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 73/196 (37%)

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           S Y N  +       +N   LM         N +  S  +   +    S+   +  +   
Sbjct: 42  SHYNNHNDHNDAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGIT 101

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
             +VT NI+I  F   G I         +  RG  P+ IT  +L+      G + K    
Sbjct: 102 SDLVTLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKF 161

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              V   +  LD   +  +I+   + G+ +   +L   ++ER   PD + +  +I +   
Sbjct: 162 HDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCK 221

Query: 324 LGMTEAAQNLENKMIA 339
             +   A NL ++M A
Sbjct: 222 NKLVGEACNLYSEMNA 237


>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
 gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
          Length = 445

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 160/341 (46%), Gaps = 13/341 (3%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPS--VDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           G C   E  +A  L E     G+ P   V ++  ++  + ++G +DEA S ++ M    D
Sbjct: 23  GHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKSHLHRM----D 78

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKP+  +Y+ LI +     R     + L  M+  G+  + VTYN +  G GKA   +E  
Sbjct: 79  CKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDE-- 136

Query: 121 SSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            +F  M  +ES G      T N ++     SG  ++  K      L  ++ +I TLN++ 
Sbjct: 137 -AFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLIL 195

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            ++ +A   ++   + D M +  F PT+VT+N ++E F     ++   +  + M H   K
Sbjct: 196 HAFCKAARPEEALGMTDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLLETMAHSKCK 255

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN +TY  +V  +++ G +++  + L Q+       +    N  ++   + G+++     
Sbjct: 256 PNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRF 315

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              M E  C  +  T+ ++++ +  LG  + A+ +  +MIA
Sbjct: 316 LTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIA 356



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 148/328 (45%), Gaps = 5/328 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A    + M   G+ P+   Y A+ +  G++GLLDEAF  +  M+S       V T++ 
Sbjct: 100 QEAREELQAMAKRGVAPNRVTYNAMATGLGKAGLLDEAFELMGVMESAGFALTAV-TFNP 158

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +++   K  R D   K++  M    IE + +T N I+  + KA + EE       MVE G
Sbjct: 159 VVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLILHAFCKAARPEEALGMTDIMVEMG 218

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P I T N+++  + N+  ++   K          K +  T +I+ + +   G   + 
Sbjct: 219 FC-PTIVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPNFVTYSIMVQKFAEMGRMVEA 277

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R+ ++ +    + P ++  N  +    K G ++    +   M   G + N+ TY SLV  
Sbjct: 278 RAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEG 337

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK--MGELFLTMKERHCV 308
           + K G + + + +L ++     + D+  ++ +I     AG +E   M  L +T       
Sbjct: 338 FCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIEHAFMVMLQVTRAVESAR 397

Query: 309 PDNITFATMIQAYNALG-MTEAAQNLEN 335
           PD  TF  +I+    LG M  AA  LE 
Sbjct: 398 PDPATFVKLIEKLCELGEMDRAALVLER 425



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 121/280 (43%), Gaps = 46/280 (16%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESG---------------------------- 130
           S  TY T++ G+  A +F+E +       ++G                            
Sbjct: 13  SEFTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKS 72

Query: 131 -----GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
                 C P+  + N++I A  +SG I++  +        GV  +  T N +    G+AG
Sbjct: 73  HLHRMDCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKAG 132

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           + D+   +M  M+   F  T VT+N V+E   K+G  ++  +  + M  R ++PN +T  
Sbjct: 133 LLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLN 192

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPF------FNCIISAYGQAGDVEKMGELF 299
            ++ A+ KA    + +  L     +D++++  F      FN ++  +     ++   +L 
Sbjct: 193 LILHAFCKAA---RPEEALGM---TDIMVEMGFCPTIVTFNALLELFCNTDQMDSAAKLL 246

Query: 300 LTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLENKMI 338
            TM    C P+ +T++ M+Q +  +G M EA   LE  ++
Sbjct: 247 ETMAHSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVV 286



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 101/206 (49%), Gaps = 5/206 (2%)

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD--IQTLNILTKSYGRAGMYDKMRSVM 194
           FT  +++  +  +G  ++ ++   EF   G+     +   N++ K +  AG  D+ +S +
Sbjct: 15  FTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDEAKSHL 74

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             M  +   P  V+YN +I+    +G I++  E  + M  RG+ PN +TY ++ +   KA
Sbjct: 75  HRMDCK---PNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMATGLGKA 131

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           GL+ +   ++  +E++   L    FN ++    ++G  ++  ++  TM  R+  P+ +T 
Sbjct: 132 GLLDEAFELMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTL 191

Query: 315 ATMIQAYNALGMTEAAQNLENKMIAM 340
             ++ A+      E A  + + M+ M
Sbjct: 192 NLILHAFCKAARPEEALGMTDIMVEM 217



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/266 (19%), Positives = 120/266 (45%), Gaps = 4/266 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +P++A  + E ML   ++P++     ++ A+ ++   +EA    + M  +  C P
Sbjct: 163 LCKSGRPDEACKVMETMLLRNIEPNILTLNLILHAFCKAARPEEALGMTDIMVEMGFC-P 221

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            + T++ L++      + D   K+L  M++   + + VTY+ ++  + +  +  E  +  
Sbjct: 222 TIVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPNFVTYSIMVQKFAEMGRMVEARAFL 281

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             +V  G   P++   N+ ++    +G ++   ++       G +A+  T N L + + +
Sbjct: 282 EQLVVCGYA-PNLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCK 340

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH--RGMKPNS 241
            G  D+   V++ M      P   TY+++I+    AG IE       ++       +P+ 
Sbjct: 341 LGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIEHAFMVMLQVTRAVESARPDP 400

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQV 267
            T+  L+    + G + +   +L ++
Sbjct: 401 ATFVKLIEKLCELGEMDRAALVLERM 426



 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 5/134 (3%)

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS--LVSAYSKAGLIMK 259
           F  +  TY  ++     AG  ++ +   ++ K  GM P S+      ++  +S+AG + +
Sbjct: 10  FVHSEFTYGTLVHGHCLAGEFDEAKRLVEEFKDTGMSPGSLVVLHNLMLKGFSEAGFVDE 69

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
             S L ++   D   ++  +N +I A   +G +++  E    M +R   P+ +T+  M  
Sbjct: 70  AKSHLHRM---DCKPNSVSYNTLIDALCSSGRIQEAREELQAMAKRGVAPNRVTYNAMAT 126

Query: 320 AYNALGMTEAAQNL 333
                G+ + A  L
Sbjct: 127 GLGKAGLLDEAFEL 140


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 149/318 (46%), Gaps = 3/318 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M S+ L+P V +Y   +  +G++G +D A+   ++MK+      DV TY+ +I   
Sbjct: 257 LLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDV-TYTSMIGVL 315

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R +   ++   M        A  YNT+I GYG A KFE+  S         GC P 
Sbjct: 316 CKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQ-RRKGCIPS 374

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + + N ++S  G  G +++  K + E     +  ++ T NI+     +AG  +    V D
Sbjct: 375 VVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRD 433

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+    FP V+T NI+++   KA  ++     F+ + H+  +P+++TYCSL+    + G
Sbjct: 434 AMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHG 493

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   +  Q+ +++ I +   +  +I  + + G  E   +++  M    C PD +   
Sbjct: 494 RVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLN 553

Query: 316 TMIQAYNALGMTEAAQNL 333
           T +      G  E  + L
Sbjct: 554 TYMDCVFKAGEIEKGRAL 571



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 3/325 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M   G   +V ++T L+  + + G +D A S +++MKS S  +PDV  Y++ I   
Sbjct: 222 LFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNS-LEPDVVLYNVCIDCF 280

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  + D+  K   EM   G+    VTY ++I    KA +  E    F  M ++    P 
Sbjct: 281 GKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV-PC 339

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            +  N+MI  YG +G  E            G    + + N +    GR G  D+     +
Sbjct: 340 AYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFE 399

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+K    P + TYNI+I+   KAG +E        MK  G+ PN IT   +V    KA 
Sbjct: 400 EMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQ 458

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +    SI   +++     D   +  +I   G+ G V++  +L+  M + + +P+ + + 
Sbjct: 459 RLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYT 518

Query: 316 TMIQAYNALGMTEAAQNLENKMIAM 340
           ++I+ +   G  E    + N+M+ +
Sbjct: 519 SLIRNFFKCGRKEDGHKIYNEMLRL 543



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 142/308 (46%), Gaps = 3/308 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  L E     G  PSV  Y  ++S  G+ G +DEA     +MK   D  P++ TY+I
Sbjct: 357 EDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKK--DAIPNLSTYNI 414

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    K  + +    +   M   G+  + +T N ++D   KA++ ++  S F  + +  
Sbjct: 415 MIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL-DHK 473

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C PD  T  S+I   G  G +++  K Y +        +      L +++ + G  +  
Sbjct: 474 TCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDG 533

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + + M +    P ++  N  ++   KAG IEK    F+++K+ G  P++ +Y  L+  
Sbjct: 534 HKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHG 593

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             KAG   +   +   ++    +LDT  +N +I  + ++G V K  +L   MK +   P 
Sbjct: 594 LVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPT 653

Query: 311 NITFATMI 318
            +T+ ++I
Sbjct: 654 VVTYGSVI 661



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 159/353 (45%), Gaps = 37/353 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           ML K  + E A ++ + M   GL P+V     +V    ++  LD+A S    +   + C+
Sbjct: 418 MLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKT-CR 476

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI+   +  R D   K+  +M       +AV Y ++I  + K  + E+    
Sbjct: 477 PDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKI 536

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL----- 177
           ++ M+  G C PD+  LN+ +     +G IEK    + E   +G   D ++  IL     
Sbjct: 537 YNEMLRLG-CSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLV 595

Query: 178 -----------------------TKSYG-------RAGMYDKMRSVMDFMQKRFFFPTVV 207
                                  T++Y        ++G  +K   +++ M+ +   PTVV
Sbjct: 596 KAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVV 655

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  VI+   K   +++    F++ K +G++ N + Y SL+  + K G I +   I+ ++
Sbjct: 656 TYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEEL 715

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
               +  +   +NC++ A  +A ++ +    F +MK+  C P+ IT++ +I  
Sbjct: 716 MQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHG 768



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 134/302 (44%), Gaps = 2/302 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  + E+   LF+ + + G  P    YT L+    ++G   EA+     MK    C  D 
Sbjct: 561 KAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKE-QGCVLDT 619

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             Y+ +I    K  + +   ++L EM   G E + VTY ++IDG  K  + +E    F  
Sbjct: 620 RAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 679

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
             +S G   ++   +S+I  +G  G I++      E    G+  ++ T N L  +  +A 
Sbjct: 680 -AKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAE 738

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              +       M+     P  +TY+I+I    K     K   ++++M+ +G KPN  TY 
Sbjct: 739 EISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYT 798

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +++S  +KAG I++ D++  + +    + D+  +N II     A        LF   + +
Sbjct: 799 TMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLK 858

Query: 306 HC 307
            C
Sbjct: 859 GC 860



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 119/264 (45%), Gaps = 1/264 (0%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y+ L+    +  +F+ +E+IL EMS  G   S  T   I+  + K++K  E   +F   
Sbjct: 132 AYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREA-FTFIQT 190

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           +      P      ++I A   S + + M   + +   +G   ++     L + + R G 
Sbjct: 191 MRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGR 250

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D   S++D M+     P VV YN+ I+ FGKAG ++   ++F +MK  G+  + +TY S
Sbjct: 251 VDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTS 310

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++    KA  + +   +   ++ +  +     +N +I  YG AG  E    L    + + 
Sbjct: 311 MIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKG 370

Query: 307 CVPDNITFATMIQAYNALGMTEAA 330
           C+P  +++  ++      G  + A
Sbjct: 371 CIPSVVSYNCILSCLGRKGQVDEA 394



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 146/327 (44%), Gaps = 3/327 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  Q ++A   FE M  D + P++  Y  ++    ++G L+ A    + MK  +   P
Sbjct: 385 LGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKD-AGLFP 442

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V T +I++    K  R D    I   + +      AVTY ++I+G G+  + +E    +
Sbjct: 443 NVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLY 502

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+++    P+     S+I  +   G  E   K YNE   +G   D+  LN       +
Sbjct: 503 EQMLDANQI-PNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFK 561

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  +K R++   ++   F P   +Y I+I    KAG   +  E F  MK +G   ++  
Sbjct: 562 AGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRA 621

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +++  + K+G + K   +L +++          +  +I    +   +++   LF   K
Sbjct: 622 YNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAK 681

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAA 330
            +    + + ++++I  +  +G  + A
Sbjct: 682 SKGIELNVVIYSSLIDGFGKVGRIDEA 708



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 136/315 (43%), Gaps = 2/315 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC + E    ++  ML  G  P + +    +    ++G +++  +   ++K++    PD 
Sbjct: 526 KCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFI-PDA 584

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            +Y+ILI    K        ++   M   G       YNT+IDG+ K+ K  +       
Sbjct: 585 RSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE 644

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M ++ G  P + T  S+I        +++    + E    G++ ++   + L   +G+ G
Sbjct: 645 M-KTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVG 703

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D+   +M+ + ++   P V T+N +++   KA  I +    F+ MK     PN ITY 
Sbjct: 704 RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYS 763

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+    K     K     ++++      +   +  +IS   +AG++ +   LF   KE+
Sbjct: 764 ILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEK 823

Query: 306 HCVPDNITFATMIQA 320
             V D+  +  +I+ 
Sbjct: 824 GGVADSAIYNAIIEG 838



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 119/268 (44%), Gaps = 44/268 (16%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + ++A +LFE   S G++ +V +Y++L+  +G+ G +DEA+  + ++       P
Sbjct: 664 LAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQ-KGLTP 722

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEMES 121
           +VYT++ L+ +  K    ++ E ++   S   ++C+   +TY+ +I G  K +KF +   
Sbjct: 723 NVYTWNCLLDALVKAE--EISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFV 780

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +  M +  G  P++FT  +MIS    +GNI + +  + +F   G  AD           
Sbjct: 781 FWQEM-QKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVAD----------- 828

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
                                      YN +IE    A         F++ + +G    +
Sbjct: 829 ------------------------SAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYT 864

Query: 242 ITYCSLVSAYSKAGLIMK---VDSILRQ 266
            T   L+ +  KA  I +   V ++LR+
Sbjct: 865 KTCVVLLDSLHKAECIEQAAIVGAVLRE 892


>gi|168055626|ref|XP_001779825.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668737|gb|EDQ55338.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 734

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 140/275 (50%), Gaps = 19/275 (6%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK K  E+A  +   ML  G+ P+V  +T+++ A   +GL+D++F   ++M + + C+
Sbjct: 425 VFGKAKMWEEALRVKADMLEAGVTPNVVTWTSIIGACATAGLVDQSFREFDEMLN-AGCR 483

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM--- 119
           P+V  Y++L+++C    +FD    +  E    G      +Y+ I +      K  E+   
Sbjct: 484 PNVNCYNMLLQACIMASQFDRAFLLFEEWKTTG---RMRSYSEIFNYSAPLAKTHELITV 540

Query: 120 ------ESSFSAMVES----GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
                 +S+    ++       C P+I T N M+ A G++   EK+     E   +G+  
Sbjct: 541 IPGSLLQSNLGEKIDEDVRLACCRPNIITYNCMMKACGSAS--EKVRSLMREMRALGLVP 598

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           D+++ +IL  SYG  G  +     ++ M+   F P VV Y  +I+   +AGH+EK  +YF
Sbjct: 599 DVKSWSILLDSYGSKGDVEGASEALEEMKAAGFKPDVVAYTSLIQACVQAGHLEKAFDYF 658

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            KMK  G++PN++TY SL+  +   G + +V   L
Sbjct: 659 SKMKAAGVRPNAVTYNSLLRRHRNYGTLPEVQRAL 693



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 170/349 (48%), Gaps = 22/349 (6%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+ K+P +A+++FE ML+DG +P+  VY ++++     G L E       M+  +    D
Sbjct: 323 GRHKEPSKATIVFEKMLNDGFEPNRFVYNSIMNV--NVGNLSEVRRYFQHMQG-AGIAAD 379

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSF 123
           V +Y+IL+K+     R DL   + A++   G +    V Y+T+I+ +GKAK +EE     
Sbjct: 380 VTSYNILLKAYAASGRADLAGDLYAQIKKAGKVTLDVVFYSTLINVFGKAKMWEEALRVK 439

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M+E+G   P++ T  S+I A   +G +++  + ++E    G + ++   N+L ++   
Sbjct: 440 ADMLEAG-VTPNVVTWTSIIGACATAGLVDQSFREFDEMLNAGCRPNVNCYNMLLQACIM 498

Query: 184 AGMYDK-------------MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           A  +D+             MRS  +     +  P   T+ ++    G        E+  +
Sbjct: 499 ASQFDRAFLLFEEWKTTGRMRSYSEIFN--YSAPLAKTHELITVIPGSLLQSNLGEKIDE 556

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            ++    +PN ITY  ++ A   A    KV S++R++    ++ D   ++ ++ +YG  G
Sbjct: 557 DVRLACCRPNIITYNCMMKACGSAS--EKVRSLMREMRALGLVPDVKSWSILLDSYGSKG 614

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           DVE   E    MK     PD + + ++IQA    G  E A +  +KM A
Sbjct: 615 DVEGASEALEEMKAAGFKPDVVAYTSLIQACVQAGHLEKAFDYFSKMKA 663



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 82/165 (49%), Gaps = 3/165 (1%)

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N++ + + R G       V+DFM++    P V TY ++I++ G+     K    F+KM +
Sbjct: 281 NLIIREFSRHGNLRSCFKVLDFMKELGVMPDVFTYRVLIDSCGRHKEPSKATIVFEKMLN 340

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G +PN   Y S+++     G + +V    + ++ + +  D   +N ++ AY  +G  + 
Sbjct: 341 DGFEPNRFVYNSIMNV--NVGNLSEVRRYFQHMQGAGIAADVTSYNILLKAYAASGRADL 398

Query: 295 MGELFLTMKERHCVPDNITF-ATMIQAYNALGMTEAAQNLENKMI 338
            G+L+  +K+   V  ++ F +T+I  +    M E A  ++  M+
Sbjct: 399 AGDLYAQIKKAGKVTLDVVFYSTLINVFGKAKMWEEALRVKADML 443


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 162/342 (47%), Gaps = 8/342 (2%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E A  L   M+ +G+ P+V  Y+ ++++   SG ++ AF+    M  +  C 
Sbjct: 253 GMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQM-FLRGCD 311

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKI--LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            +++T++ LIK C  F R  L E +     M   G E + V YNT+I G       EE  
Sbjct: 312 ANIHTFTPLIKGC--FMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEAL 369

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M  SG C P++ T + +I  +  SG++    + +N     G + ++ T   +   
Sbjct: 370 QVCDQMQRSG-CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV 428

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             +  M+D+  S+++ M      P  +T+N  I+     G +E   +  ++M+  G  PN
Sbjct: 429 LCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPN 488

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY  L+ A  +     +   + +++E  ++  +   +N ++  + +AG + +  +LF 
Sbjct: 489 ITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFG 548

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
               R   PD+IT+ TMI AY   G  + A  L  ++ +MKE
Sbjct: 549 KALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKE 590



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 143/321 (44%), Gaps = 15/321 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + + A  LF  M + G  P    YT +VS+  ++G +D+A             KP
Sbjct: 189 LCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRF------KP 242

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V  Y+ LI    K  R ++  K+L EM   G++ + V+Y+ II+    +   E   + F
Sbjct: 243 SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALF 302

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLM---GVKADIQTLNILTK 179
           + M    GC  +I T   +I      G + E ++ W     LM   G + ++   N L  
Sbjct: 303 AQMFLR-GCDANIHTFTPLIKGCFMRGKLYEALDLW----KLMIQDGCEPNVVAYNTLIH 357

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                G  ++   V D MQ+    P V TY+I+I+ F K+G +    E + +M   G +P
Sbjct: 358 GLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRP 417

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N +TY  +V    K  +  + +S++ ++       +T  FN  I      G VE   +L 
Sbjct: 418 NVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLL 477

Query: 300 LTMKERHCVPDNITFATMIQA 320
             M+   C+P+  T+  ++ A
Sbjct: 478 ERMQGHGCLPNITTYNELLDA 498



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 145/330 (43%), Gaps = 13/330 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---VSDCKPDVYT 67
           EQA  +F  +   G KP+V +Y  L+ A     L +  F  IN + +        P+V+T
Sbjct: 126 EQALKMFYRIGEFGCKPTVRIYNHLLDAL----LSENKFQMINPLYTNMKKDGLIPNVFT 181

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+IL+K+  K  R D   K+  EMS  G    AVTY T++    KA K ++      A  
Sbjct: 182 YNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDD------ARE 235

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            +G   P +   N++I      G IE   K   E    GV  ++ + + +  S   +G  
Sbjct: 236 LAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           +   ++   M  R     + T+  +I+     G + +  + +K M   G +PN + Y +L
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +      G + +   +  Q++ S  + +   ++ +I  + ++GD+    E +  M    C
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKM 337
            P+ +T+  M+       M + A +L  KM
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 158/398 (39%), Gaps = 65/398 (16%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA--------------- 48
           LG+  + +    + + M  DG+    D++  +++ Y + G  ++A               
Sbjct: 84  LGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPT 143

Query: 49  ----------------FSTINDMKS---VSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
                           F  IN + +        P+V+TY+IL+K+  K  R D   K+  
Sbjct: 144 VRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFV 203

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEME----------SSFSAMVES---------- 129
           EMS  G    AVTY T++    KA K ++              ++A+++           
Sbjct: 204 EMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVA 263

Query: 130 ---------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                     G  P++ + + +I++   SGN+E     + +  L G  A+I T   L K 
Sbjct: 264 IKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKG 323

Query: 181 -YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + R  +Y+ +  +   M +    P VV YN +I      G +E+  +   +M+  G  P
Sbjct: 324 CFMRGKLYEAL-DLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLP 382

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N  TY  L+  ++K+G ++       ++ +     +   + C++    +    ++   L 
Sbjct: 383 NVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLV 442

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             M    C P+ ITF T I+     G  E A  L  +M
Sbjct: 443 EKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERM 480



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 6/272 (2%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY ++I+   +    D+++ IL +M   GI C    +  II+GY +    E+    F  +
Sbjct: 76  TYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRI 135

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E G C P +   N ++ A  +    + +   Y      G+  ++ T NIL K+  +   
Sbjct: 136 GEFG-CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDR 194

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D    +   M  +   P  VTY  ++ +  KAG I+   E   + K     P+   Y +
Sbjct: 195 VDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNA 249

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+    K G I     +L ++ ++ V  +   ++CII++   +G+VE    LF  M  R 
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           C  +  TF  +I+     G    A +L   MI
Sbjct: 310 CDANIHTFTPLIKGCFMRGKLYEALDLWKLMI 341



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 7/174 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  L E M   G  P++  Y  L+ A  +    +EAF    ++++  + +P++ TY+ 
Sbjct: 471 EWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEA-RNLQPNLVTYNT 529

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMV 127
           ++   ++        ++  +    G    ++TYNT+I  Y   GK K   ++    S+M 
Sbjct: 530 VLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMK 589

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           E    HPDI T  S+I    N  NIE+   + ++    G+  +  T N L + +
Sbjct: 590 EW---HPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 35/170 (20%)

Query: 202 FFPTVVTYNIVIETFG-----------------------------------KAGHIEKME 226
           F  T  TY ++IE  G                                   + G  E+  
Sbjct: 70  FQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQAL 129

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
           + F ++   G KP    Y  L+ A         ++ +   ++   +I +   +N ++ A 
Sbjct: 130 KMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKAL 189

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
            +   V+   +LF+ M  + C PD +T+ TM+ +    G  + A+ L  +
Sbjct: 190 CKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGR 239


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 160/333 (48%), Gaps = 2/333 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  + ++A  +FE M     +PSV  Y A+++   +SG   +A      MK+V    PD
Sbjct: 87  GRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVG-IVPD 145

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           VYT++I IKS  +  R     ++L  M   G + +AV Y T++ G+ +     E    F+
Sbjct: 146 VYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFN 205

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+  G   PD+ T N ++      G +++ E+  N+    G+ +++ T NI  +   R 
Sbjct: 206 DMLRIG-IFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRK 264

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           GM     S++D + +    P VVTYN +I    K  ++ + E+Y  K+ + G++P+  TY
Sbjct: 265 GMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTY 324

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+  Y K G++   + IL+       + D   +  +I+   Q  ++++   LF     
Sbjct: 325 NTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALG 384

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +   P  I +  +I+     G+   A  + N+M
Sbjct: 385 KGLKPTVILYNMLIKGLCQEGLILQALQMMNEM 417



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 150/337 (44%), Gaps = 40/337 (11%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  E  +A  LF   L  GLKP+V +Y  L+    Q GL+ +A   +N+M S + C 
Sbjct: 365 GLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEM-SENGCS 423

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D++T                                   YN +I+G  K     +  + 
Sbjct: 424 SDIWT-----------------------------------YNLVINGLCKMGCVSDANNL 448

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            +  +  G   PD+FT N++I  Y     +E   +  N+    GV  D+ T N +     
Sbjct: 449 MNDAIAKGYV-PDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLS 507

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A   + +    + M ++   P  +TYNI+ E+  KAG + +  +   ++ ++G+ P+++
Sbjct: 508 KAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTV 567

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQV-ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           ++ +++S ++  G +     + R++ E   V   T  +N +I+A+ +  D+    +LFL 
Sbjct: 568 SFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLE 627

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           M    C PD  T+  MI  +   G T++      +MI
Sbjct: 628 MGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMI 664



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 141/326 (43%), Gaps = 11/326 (3%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK     +A      +++ GL+P    Y  L+  Y + G+L  A   +      +
Sbjct: 292 LICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQG----A 347

Query: 60  DCK---PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            CK   PD +TY  LI    +    D    +       G++ + + YN +I G  +    
Sbjct: 348 ICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLI 407

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
            +     + M E+G C  DI+T N +I+     G +       N+    G   D+ T N 
Sbjct: 408 LQALQMMNEMSENG-CSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNT 466

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   Y +    +    +++ M      P V+TYN V+    KA   E + E F+ M  +G
Sbjct: 467 LIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKG 526

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
             PN ITY  L  +  KAG + +   ++ ++ N  +  DT  F  IIS +   GD++   
Sbjct: 527 CVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAY 586

Query: 297 ELFLTMKERHCVPDNI-TFATMIQAY 321
           +LF  M E++ V     T+  MI A+
Sbjct: 587 QLFRRMGEQYKVSHTTATYNIMINAF 612



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 148/334 (44%), Gaps = 4/334 (1%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+ E  ++  L   +L  G+  ++  +   +    + G+L  A S ++ +       PD
Sbjct: 227 CKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIR-EGLTPD 285

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ LI    K       EK L ++   G+E    TYNT+IDGY K    +  E    
Sbjct: 286 VVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQ 345

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +  G   PD FT  S+I+    +  I++    +N     G+K  +   N+L K   + 
Sbjct: 346 GAICKGFV-PDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQE 404

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G+  +   +M+ M +      + TYN+VI    K G +            +G  P+  T+
Sbjct: 405 GLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTF 464

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+  Y K   +     IL ++ +  V  D   +N +++   +A   E + E F TM E
Sbjct: 465 NTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVE 524

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + CVP+ IT+  + ++    G    A +L ++++
Sbjct: 525 KGCVPNKITYNILTESLCKAGKVNEALDLVDEIL 558



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 142/332 (42%), Gaps = 2/332 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + K+P  A  L   M+S G + +   Y  +V+ + +     EA+   NDM  +    PDV
Sbjct: 158 RTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIG-IFPDV 216

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            T++ L+ +  K       E++L ++   G+  +  T+N  I G  +        S   +
Sbjct: 217 STFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDS 276

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           ++  G   PD+ T N++I     + N+ + EK+ ++    G++ D  T N L   Y + G
Sbjct: 277 VIREG-LTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMG 335

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           M      ++     + F P   TY  +I    +   I++    F     +G+KP  I Y 
Sbjct: 336 MLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYN 395

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+    + GLI++   ++ ++  +    D   +N +I+   + G V     L      +
Sbjct: 396 MLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAK 455

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             VPD  TF T+I  Y      E    + NKM
Sbjct: 456 GYVPDVFTFNTLIDGYCKQLKMETTIQILNKM 487



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 130/324 (40%), Gaps = 39/324 (12%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV--TYN 104
           +A    N +K     K  + TY  +I+       F  +E +LAE + + I+ S +   Y 
Sbjct: 22  KALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAE-TRMDIDNSLLEGVYI 80

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
             +  YG+  K +E    F  M +   C P + + N++++    SG  ++  K +     
Sbjct: 81  GAMKSYGRKGKVQEAVDVFERM-DFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKN 139

Query: 165 MGVKADIQTLNILTKSYGR------------------------------AGMYDKMRSVM 194
           +G+  D+ T  I  KS+ R                              AG Y++   V 
Sbjct: 140 VGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVE 199

Query: 195 DF-----MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
            +     M +   FP V T+N ++ T  K G +++ E    K+  +GM  N  T+   + 
Sbjct: 200 AYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQ 259

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
              + G++    S+L  V    +  D   +N +I    +  +V +  +    +      P
Sbjct: 260 GLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEP 319

Query: 310 DNITFATMIQAYNALGMTEAAQNL 333
           D  T+ T+I  Y  +GM + A+ +
Sbjct: 320 DGFTYNTLIDGYCKMGMLQNAEKI 343



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 108/268 (40%), Gaps = 11/268 (4%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   E    +   M S G+ P V  Y ++++   ++   ++   T   M     C 
Sbjct: 470 GYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVE-KGCV 528

Query: 63  PDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           P+  TY+IL +S  K  +     DL+++IL +    GI    V++ TII G+      + 
Sbjct: 529 PNKITYNILTESLCKAGKVNEALDLVDEILNK----GITPDTVSFATIISGFANNGDLKG 584

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  M E         T N MI+A+    ++   EK + E    G   D  T  ++ 
Sbjct: 585 AYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMI 644

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             +   G  D     +  M ++ F P++ T+  VI        + +  +    M H G+ 
Sbjct: 645 DGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIV 704

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           P  +   S       A   + V+ +L++
Sbjct: 705 PEVVNSISEADKKVVAAPKIVVEDLLKR 732



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 1/141 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +  +A  L + +L+ G+ P    +  ++S +  +G L  A+     M        
Sbjct: 541 LCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSH 600

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
              TY+I+I +  +     + EK+  EM   G      TY  +IDG+      +      
Sbjct: 601 TTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFL 660

Query: 124 SAMVESGGCHPDIFTLNSMIS 144
             M+E G   P + T   +I+
Sbjct: 661 LEMIEKGFI-PSLTTFGRVIN 680



 Score = 38.9 bits (89), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI---TYCSLVSAYSKAGLIM 258
           F  +++TY  +I+  G  G+   ME    +   R    NS+    Y   + +Y + G + 
Sbjct: 36  FKHSLLTYKCIIQKLGFHGNFVAMENVLAET--RMDIDNSLLEGVYIGAMKSYGRKGKVQ 93

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +   +  +++  +       +N I++   ++G  ++  ++FL MK    VPD  TF   I
Sbjct: 94  EAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRI 153

Query: 319 QAYNALGMTEAAQNLENKMIA 339
           +++       +A  L N M++
Sbjct: 154 KSFCRTKRPHSALRLLNNMVS 174


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 167/378 (44%), Gaps = 50/378 (13%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS----------- 57
           +P  A+ + E     G + +   Y ALV  Y ++GLL++A   +  M +           
Sbjct: 111 RPADAARVVEAC---GPEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHN 167

Query: 58  -----------VSD------------CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
                      V+D            C PDV TY+IL+++  K   +    +++  M   
Sbjct: 168 PLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAE 227

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G E + VTYN IID   +    ++     +++  S GC P+    N+++  + +      
Sbjct: 228 GCEPNNVTYNVIIDAMCREGDVDQARELLNSL-PSRGCKPNTVNYNTVLKGFCS------ 280

Query: 155 MEKWYNEFNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +E+W +   ++          +  TLN++  +  R G+  K+   ++ M K      VVT
Sbjct: 281 IERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVT 340

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN VI    + G+++   E    M+  G KP+ +TY +++     A      + ++ ++ 
Sbjct: 341 YNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMS 400

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
            +D + D   FN IIS + Q G + +  E+F  M E+ C P++ T++T+I      G  E
Sbjct: 401 QNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKME 460

Query: 329 AAQNLENKMIAMKENSGK 346
            A  L N+M     N+ K
Sbjct: 461 QALELLNEMANKGFNTDK 478



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 139/347 (40%), Gaps = 54/347 (15%)

Query: 36  VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYL 94
           +SA    G LD A   +      S   PDV   + L++  C +    D    + A     
Sbjct: 71  LSALIHRGDLDAALRLVGS----SPRPPDVPLANRLVRDLCRRGRPADAARVVEA----C 122

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAM---VESGGCHPDIFTLNSMISAYGNSGN 151
           G E +A TY  ++DGY +A   E+       M   V++       +  N +I A    G 
Sbjct: 123 GPEATAATYGALVDGYCRAGLLEDARRVVGGMPAHVQASS----AYAHNPLIHALCERGR 178

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +       +     G   D+ T NIL ++  +   Y +   ++DFM+     P  VTYN+
Sbjct: 179 VADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNV 238

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY-------CS------------------ 246
           +I+   + G +++  E    +  RG KPN++ Y       CS                  
Sbjct: 239 IIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVREN 298

Query: 247 ----------LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
                     +++   + GL+ KV   L ++       +   +N +IS   + G+V+   
Sbjct: 299 CPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSAL 358

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           EL   M+   C PD +T+ T+++   +    E A+ L   MI M +N
Sbjct: 359 ELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEEL---MIKMSQN 402



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 156/364 (42%), Gaps = 38/364 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            QA  L + M ++G +P+   Y  ++ A  + G +D+A   +N + S   CKP+   Y+ 
Sbjct: 215 RQALELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPS-RGCKPNTVNYNT 273

Query: 71  LIKSCTKFHRF--------------------------------DLIEKI---LAEMSYLG 95
           ++K      R+                                 L++K+   L +MS  G
Sbjct: 274 VLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHG 333

Query: 96  IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155
              + VTYN +I G  +    +      S M +S GC PDI T N+++    ++   E  
Sbjct: 334 CTANVVTYNAVISGMCEQGNVDSALELLSNM-QSFGCKPDIVTYNTVLKGLCSADRWEDA 392

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           E+   + +      D  T N +   + + G+  +   V   M ++   P   TY+ +I  
Sbjct: 393 EELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGG 452

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             KAG +E+  E   +M ++G   + + Y  L  + +K   I +V  ++ ++++S +   
Sbjct: 453 LTKAGKMEQALELLNEMANKGFNTDKM-YRVLTESLNKEDKIEEVVQVVHKLQDSGISPQ 511

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
           T  +N ++    + G  +   ++   M    C+PD  T+  +I+     G ++ A+ L +
Sbjct: 512 TVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLS 571

Query: 336 KMIA 339
           ++ +
Sbjct: 572 RLCS 575



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 120/263 (45%), Gaps = 3/263 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++ +L  E M   G   +V  Y A++S   + G +D A   +++M+S   CKPD+ TY+ 
Sbjct: 320 QKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFG-CKPDIVTYNT 378

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++K      R++  E+++ +MS         T+NTII  + +     +    F  M E G
Sbjct: 379 VLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKG 438

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C+P+  T +++I     +G +E+  +  NE    G   D +   +LT+S  +    +++
Sbjct: 439 -CNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTD-KMYRVLTESLNKEDKIEEV 496

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V+  +Q     P  V YN V+    + G  +   +    M   G  P+  TY  L+  
Sbjct: 497 VQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEG 556

Query: 251 YSKAGLIMKVDSILRQVENSDVI 273
               G   +   +L ++ + DV+
Sbjct: 557 LFYEGYSKEARELLSRLCSRDVL 579


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 154/322 (47%), Gaps = 2/322 (0%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F+ M   G  P+V  Y  L+  Y +   +D+ F  +  M ++   +P++ +Y+++I    
Sbjct: 228 FDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSM-ALKGLEPNLISYNVVINGLC 286

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           +  R   I  +L EM+  G     VTYNT+I GY K   F +     + M+  G   P +
Sbjct: 287 REGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG-LSPSV 345

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            T  S+I +   +GN+ +  ++ ++  + G+  + +T   L   + + G  ++   V+  
Sbjct: 346 ITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKE 405

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M    F P+VVTYN +I     AG +       + MK +G+ P+ ++Y +++S + ++  
Sbjct: 406 MIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYD 465

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + +   + R++    +  DT  ++ +I  + +    ++  +LF  M      PD  T+  
Sbjct: 466 VDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTA 525

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           +I AY   G  + A  L N+M+
Sbjct: 526 LINAYCMEGDLQKAIQLHNEMV 547



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 161/326 (49%), Gaps = 2/326 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +F+ ML   + P+V  Y  L+  +  +G LD A    + M+    C P+V TY+ LI
Sbjct: 189 AENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEK-KGCLPNVVTYNTLI 247

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K  + D   ++L  M+  G+E + ++YN +I+G  +  + +E+    + M + G  
Sbjct: 248 DGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYS 307

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             ++ T N++I  Y   GN  +    + E    G+   + T   L  S  +AG  ++   
Sbjct: 308 LDEV-TYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATE 366

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
            +D M+ R   P   TY  +++ F + G++ +     K+M   G  P+ +TY +L++ + 
Sbjct: 367 FLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHC 426

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
            AG ++   ++L  ++   +  D   ++ ++S + ++ DV++   +   M  +   PD I
Sbjct: 427 IAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTI 486

Query: 313 TFATMIQAYNALGMTEAAQNLENKMI 338
           T++++IQ +     T+ A +L ++M+
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLFDEML 512



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 156/319 (48%), Gaps = 3/319 (0%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80
           + G  P V  Y A++ A  +S   +  A +   +M   S   P+V+TY+ILI+       
Sbjct: 162 AHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQ-SQVSPNVFTYNILIRGFCLAGN 220

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
            D+  +    M   G   + VTYNT+IDGY K +K ++      +M   G   P++ + N
Sbjct: 221 LDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKG-LEPNLISYN 279

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I+     G ++++     E N  G   D  T N L K Y + G + +   +   M + 
Sbjct: 280 VVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 339

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
              P+V+TY  +I +  KAG++ +  E+  +M+ RG+ PN  TY +LV  +S+ G + + 
Sbjct: 340 GLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +L+++ ++        +N +I+ +  AG +     +   MKE+   PD ++++T++  
Sbjct: 400 YRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSG 459

Query: 321 YNALGMTEAAQNLENKMIA 339
           +      + A  ++ KM+A
Sbjct: 460 FCRSYDVDEALRVKRKMVA 478



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 133/309 (43%), Gaps = 52/309 (16%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  + + M+ +G  PSV  Y AL++ +  +G + +A + + DMK      PDV +YS +
Sbjct: 398 EAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKE-KGLTPDVVSYSTV 456

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    + +  D   ++  +M   GI+   +TY+++I G+ + ++ +E    F  M+  G 
Sbjct: 457 LSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVG- 515

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT------------- 178
             PD FT  ++I+AY   G+++K  + +NE    GV  D+ T ++L              
Sbjct: 516 LPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAK 575

Query: 179 -------------------------------------KSYGRAGMYDKMRSVMDFMQKRF 201
                                                K +   GM  +   V + M ++ 
Sbjct: 576 RLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKN 635

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P    YN++I    + G I K    +K+M   G   +++T  +LV    K G + +++
Sbjct: 636 HKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELN 695

Query: 262 SILRQVENS 270
           S++  V  S
Sbjct: 696 SVIANVLRS 704



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 136/288 (47%), Gaps = 20/288 (6%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL----GIECSAVTYNTIIDGYGKAKK- 115
           C      + +++KS   + R  LI+K L+ + +L    G     ++YN ++D   ++K+ 
Sbjct: 130 CNSTSSVFDLVVKS---YSRLCLIDKALS-IVHLSQAHGFMPGVLSYNAVLDATIRSKRN 185

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
               E+ F  M++S    P++FT N +I  +  +GN++   ++++     G   ++ T N
Sbjct: 186 ISFAENVFKEMLQS-QVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYN 244

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L   Y +    D    ++  M  +   P +++YN+VI    + G ++++     +M  R
Sbjct: 245 TLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKR 304

Query: 236 GMKPNSITYCSLVSAYSKAG-----LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           G   + +TY +L+  Y K G     L+M  + +LR   +  VI     +  +I +  +AG
Sbjct: 305 GYSLDEVTYNTLIKGYCKEGNFHQALVMHAE-MLRHGLSPSVIT----YTSLIHSMCKAG 359

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++ +  E    M+ R   P+  T+ T++  ++  G    A  +  +MI
Sbjct: 360 NMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMI 407



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 92/268 (34%), Gaps = 86/268 (32%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT--------------------- 178
           N ++ +  N   I K   W N      ++    TL+ILT                     
Sbjct: 53  NLLLKSQNNQELILKFLTWANPHQFFTLRCKCITLHILTRFKLYKTAQTLAEDVAAKTLD 112

Query: 179 -----------------------------KSYGRAGMYDKMRSVMDFMQKRFFFPTVV-- 207
                                        KSY R  + DK  S++   Q   F P V+  
Sbjct: 113 DEDASLVFRSLQETYDLCNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSY 172

Query: 208 ----------------------------------TYNIVIETFGKAGHIEKMEEYFKKMK 233
                                             TYNI+I  F  AG+++    +F +M+
Sbjct: 173 NAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRME 232

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +G  PN +TY +L+  Y K   I     +LR +    +  +   +N +I+   + G ++
Sbjct: 233 KKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMK 292

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAY 321
           ++  +   M +R    D +T+ T+I+ Y
Sbjct: 293 EISFVLTEMNKRGYSLDEVTYNTLIKGY 320


>gi|224119538|ref|XP_002318099.1| predicted protein [Populus trichocarpa]
 gi|222858772|gb|EEE96319.1| predicted protein [Populus trichocarpa]
          Length = 426

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 152/307 (49%), Gaps = 1/307 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A ++   M   G+  +  +Y  L+ +Y +S  ++EA    ++M++    KP   T++I
Sbjct: 63  KEALIIQTEMERRGISSNAIIYNTLMDSYSKSNQIEEAEGLYSEMQA-KGLKPTSATFNI 121

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ + ++  + D+IEK+L EM   G+  +A +Y  +I  YG+ KK  +M +     ++  
Sbjct: 122 LMDAYSRRMQPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDMAADAFLRMKKA 181

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P  ++  ++I AY  SG  EK    +      G+K  I+T   L  ++ RAG    +
Sbjct: 182 GIKPTSYSYTALIHAYSVSGWHEKAYITFENMQREGIKPSIETYTTLLDAFRRAGDTKTL 241

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M +     T VT+NI+++ F K GH  +  +   + K  G+ P  +TY  L++A
Sbjct: 242 MDIWKLMMREKVEGTRVTFNILLDGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNA 301

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y++ G   K+  +L+++    +  D+  +  +I AY +  D  +       M +   VPD
Sbjct: 302 YARGGQDSKLPQLLKEMATLKLEPDSITYTTMIYAYVRVRDFRRAFFYHKMMVKSGKVPD 361

Query: 311 NITFATM 317
             ++  +
Sbjct: 362 AKSYQKL 368



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 125/286 (43%), Gaps = 17/286 (5%)

Query: 60  DCKPDVYTYSILI-----KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---G 111
           +  PD  T  I+I     K CT    ++  E+    M+  G++ S      +I  +   G
Sbjct: 5   NVSPDHVTCCIMITVMRKKGCTAKEAWEFFER----MTRKGVKWSPEVLGALIKSFCDEG 60

Query: 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
             K+   +++     +E  G   +    N+++ +Y  S  IE+ E  Y+E    G+K   
Sbjct: 61  LKKEALIIQTE----MERRGISSNAIIYNTLMDSYSKSNQIEEAEGLYSEMQAKGLKPTS 116

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME-EYFK 230
            T NIL  +Y R    D +  ++  MQ     P   +Y  +I  +G+   +  M  + F 
Sbjct: 117 ATFNILMDAYSRRMQPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDMAADAFL 176

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           +MK  G+KP S +Y +L+ AYS +G   K       ++   +      +  ++ A+ +AG
Sbjct: 177 RMKKAGIKPTSYSYTALIHAYSVSGWHEKAYITFENMQREGIKPSIETYTTLLDAFRRAG 236

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
           D + + +++  M         +TF  ++  +   G    A+++ N+
Sbjct: 237 DTKTLMDIWKLMMREKVEGTRVTFNILLDGFAKQGHYMEARDVINE 282



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 110/269 (40%), Gaps = 14/269 (5%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYG-QSGLLDEAFSTINDMKSVSDCKPDVYT 67
           QP+    L   M   GL P+   YT L+SAYG Q  + D A      MK     KP  Y+
Sbjct: 131 QPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMSDMAADAFLRMKKAG-IKPTSYS 189

Query: 68  YSILIK--SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           Y+ LI   S + +H    I      M   GI+ S  TY T++D + +A   + +   +  
Sbjct: 190 YTALIHAYSVSGWHEKAYI--TFENMQREGIKPSIETYTTLLDAFRRAGDTKTLMDIWKL 247

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+          T N ++  +   G+  +     NEF   G+   + T N+L  +Y R G
Sbjct: 248 MMREK-VEGTRVTFNILLDGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNAYARGG 306

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              K+  ++  M      P  +TY  +I  + +     +   Y K M   G  P++    
Sbjct: 307 QDSKLPQLLKEMATLKLEPDSITYTTMIYAYVRVRDFRRAFFYHKMMVKSGKVPDA---- 362

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVIL 274
               +Y K   I+ V + ++   +   IL
Sbjct: 363 ---KSYQKLRAILDVKAAIKNRRDKSAIL 388


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 158/360 (43%), Gaps = 42/360 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++E M   G K  +  Y  L+ A  ++G++D+AF    DMK    C PD YTY+ILI+  
Sbjct: 150 VYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ-KHCVPDAYTYTILIRMS 208

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R         EM   G   + + +NTII+  GK K  +++    S MVE+  C P+
Sbjct: 209 GKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVEN-DCQPN 267

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNE-FNLMGVKADIQTLNILTKSYGRAGMYDKMRSV- 193
            FT +  +      G + ++    NE  ++     +    + L KS  ++G   +  +V 
Sbjct: 268 QFTYSITLDILATEGQLHRL----NEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVF 323

Query: 194 ----------------------------------MDFMQKRFFFPTVVTYNIVIETFGKA 219
                                             +  M ++     V  YN+V    GK 
Sbjct: 324 CRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKL 383

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
             +  +   F KMK  G+ P+  TY  ++S+Y + GL+ K   +   +E S    D   +
Sbjct: 384 KQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTY 443

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I+  G+ GD+++   LF  M+E+   PD  T++ +I+ +      E A +L ++MI+
Sbjct: 444 NSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMIS 503



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 160/346 (46%), Gaps = 32/346 (9%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M GK  +  +    F+ M+S G   ++  +  ++ A G++ ++D+    ++ M   +DC+
Sbjct: 207 MSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVE-NDCQ 265

Query: 63  PDVYTYSI---LIKSCTKFHRFDLIEKILAEM------SYLGIEC-----SAVTYNTIID 108
           P+ +TYSI   ++ +  + HR + +  I +        SYL         ++  +N    
Sbjct: 266 PNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCR 325

Query: 109 GYGKAKK-----FEEM-------ESSFSA-----MVESGGCHPDIFTLNSMISAYGNSGN 151
            +   +K     F  M       E +  A     M+   G   D+   N + SA G    
Sbjct: 326 MWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQ 385

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +  +   +++    G+  D+ T NI+  SYGR G+ DK   + + M+     P VVTYN 
Sbjct: 386 VSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNS 445

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I   GK G +++    FK+M+ +G  P+  TY  L+  + K+  +    S+  ++ +  
Sbjct: 446 LINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEG 505

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
              +   +N ++    + G  E+  +L+ TMK++  +PD+IT++ +
Sbjct: 506 CTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV  Y+++  +  K  +   I  +  +M   GI     TYN +I  YG+    ++    F
Sbjct: 369 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 428

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E+  C PD+ T NS+I+  G  G++++    + E    G   D+ T +IL + +G+
Sbjct: 429 EVM-EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGK 487

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +   +   S+ D M      P +VTYNI+++   + G  E+  + ++ MK +G+ P+SIT
Sbjct: 488 SNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSIT 547

Query: 244 YCSLVSAYSKAGLIMKVDSILR 265
           Y  L    S++   +++    R
Sbjct: 548 YSILERLESRSQRTVRIRKPTR 569



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 119/300 (39%), Gaps = 33/300 (11%)

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YTY  ++++  +        ++  EM   G +     YN ++D   KA   ++    F  
Sbjct: 129 YTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFED 188

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M +   C PD +T   +I   G +G   K   +++E    G   ++   N + ++ G+  
Sbjct: 189 M-KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNK 247

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNI--------------------------------VI 213
           M DK+  V+  M +    P   TY+I                                ++
Sbjct: 248 MVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLV 307

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
           ++  K+GH  +    F +M +   K +   + S++     A   ++   +L  +    ++
Sbjct: 308 KSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIV 367

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   +N + SA G+   V  +  LF  MK    +PD  T+  MI +Y  +G+ + A  L
Sbjct: 368 TDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASEL 427



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 99/234 (42%), Gaps = 4/234 (1%)

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           + L   S  G+  S  TY  I+  + ++++  +    +  M    G   DIF  N ++ A
Sbjct: 114 RCLELASKWGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEM-RRKGYKLDIFAYNMLLDA 172

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
              +G +++  + + +        D  T  IL +  G+AG   K  S  D M  +     
Sbjct: 173 LAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLN 232

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           ++ +N +IE  GK   ++K+     KM     +PN  TY   +   +  G + +++ +L 
Sbjct: 233 LIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVL- 291

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
             +     ++   ++ ++ +  ++G   +   +F  M   H   D   F +M++
Sbjct: 292 --DICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLE 343



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN--- 151
           G    A +YN I+    + +          A +E  G   +I T+N ++   G       
Sbjct: 55  GFRHDAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEVER 114

Query: 152 -IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            +E   KW       G++    T   + +++ R+    K   V + M+++ +   +  YN
Sbjct: 115 CLELASKW-------GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYN 167

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           ++++   KAG +++  + F+ MK +   P++ TY  L+    KAG   K  S   ++ + 
Sbjct: 168 MLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSK 227

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             +L+   FN II A G+   V+K+  +   M E  C P+  T++  +
Sbjct: 228 GCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITL 275



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 3/173 (1%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           GV  +I T+N+L    G     ++    ++   K     +  TY  +++   ++  + K 
Sbjct: 91  GVAGNISTINLLVGMGGGGVEVER---CLELASKWGLRLSGYTYKCIVQAHLRSREVSKG 147

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
            + +++M+ +G K +   Y  L+ A +KAG++ +   +   ++    + D   +  +I  
Sbjct: 148 FQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRM 207

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            G+AG   K    F  M  + CV + I F T+I+A     M +    + +KM+
Sbjct: 208 SGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMV 260



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           RAG  + +R V D M++      + T N+++   G    +E+  E   K    G++ +  
Sbjct: 74  RAGPSEALRLVAD-MERDGVAGNISTINLLVGMGGGGVEVERCLELASKW---GLRLSGY 129

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  +V A+ ++  + K   +  ++      LD   +N ++ A  +AG V++  ++F  M
Sbjct: 130 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 189

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           K++HCVPD  T+  +I+     G T    +  ++M++
Sbjct: 190 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVS 226


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 158/340 (46%), Gaps = 19/340 (5%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+ + A   F   L   + P +  +  ++S   + G L +A     D+K+     P V T
Sbjct: 170 KRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWG-LAPSVAT 228

Query: 68  YSILIKS-CTKFHRFDL--IEKILAEMSYLGIECSAVTYNTIIDGYGK-------AKKFE 117
           Y+ LI   C K    ++  ++ +L EM   GI  +AVT+  +I+GY K        + FE
Sbjct: 229 YNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFE 288

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           EM+          G    + T NS+IS   + G +E+  K   E   +G+  +  T   +
Sbjct: 289 EMKQQ--------GIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCV 340

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            K + + GM       +D M +R   P VV YNI+I+ + + G +E      + M  +G+
Sbjct: 341 LKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGI 400

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            PN  TY  L++ +S++G       +L +++   +  D   +N +I A    G+V K  +
Sbjct: 401 SPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVK 460

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           L   M E    P+++T+ T+IQ +   G  ++A  +  +M
Sbjct: 461 LLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 149/341 (43%), Gaps = 5/341 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C+  Q  +A  + + + + GL PSV  Y +L+  Y + G     +     +K + 
Sbjct: 197 VISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMV 256

Query: 60  DC--KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           +    P   T+ +LI    K        ++  EM   GI  S VTYN++I G     K E
Sbjct: 257 EAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVE 316

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E       M E  G  P+  T   ++  +   G +     W +      V+ D+   NIL
Sbjct: 317 EGVKLMEEM-EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNIL 375

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              Y R G  +   +V + M K+   P V TYN +I  F ++G          +MK +G+
Sbjct: 376 IDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGI 435

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           + + +TY  L+ A    G + K   +L ++    +  +   +N II  +   G+++   E
Sbjct: 436 EADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYE 495

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +   M++     + +T+   I+ +  +G  + A +L N+M+
Sbjct: 496 IRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEML 536



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 132/306 (43%), Gaps = 2/306 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
              +L + M+  G+ P+   +  L++ Y ++     A     +MK        V TY+ L
Sbjct: 247 HVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQ-QGIAASVVTYNSL 305

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       + +   K++ EM  LG+  + +T+  ++ G+ K     +       M E   
Sbjct: 306 ISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN- 364

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+   N +I  Y   G +E            G+  ++ T N L   + R+G +    
Sbjct: 365 VEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++D M+++     VVTYN++I      G + K  +   +M   G++PN +TY +++  +
Sbjct: 425 GLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGF 484

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G I     I  ++E      +   +N  I  + Q G +++  +L   M ++  VP+ 
Sbjct: 485 CDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNG 544

Query: 312 ITFATM 317
           IT+ T+
Sbjct: 545 ITYETI 550



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 121/279 (43%), Gaps = 4/279 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +P   + + L+       R DL EK         +     T+NT+I G  +  +  +   
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRK-AG 211

Query: 122 SFSAMVESGGCHPDIFTLNSMISAY---GNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             +  +++ G  P + T NS+I  Y   G +GN+  ++    E    G+     T  +L 
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             Y +         V + M+++    +VVTYN +I      G +E+  +  ++M+  G+ 
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN IT+  ++  + K G++   +  +  +   +V  D   +N +I  Y + G +E    +
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAV 391

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              M ++   P+  T+  +I  ++  G   +A  L ++M
Sbjct: 392 KEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 122 SFSAMVESGGCHP----DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           ++ A + +G  HP       ++N++++    +  ++  EK +       V  DI T N +
Sbjct: 138 AYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTV 197

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF---GKAGHIEKMEEYFKKMKH 234
                R G   K   V   ++     P+V TYN +I+ +   G AG++  ++   K+M  
Sbjct: 198 ISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVE 257

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+ P ++T+  L++ Y K         +  +++   +      +N +IS     G VE+
Sbjct: 258 AGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEE 317

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +L   M++    P+ ITF  +++ +   GM   A +  + M
Sbjct: 318 GVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGM 360


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 162/352 (46%), Gaps = 16/352 (4%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +  L + K+ E++ LLF+ M   G+ P V  YT L+ ++ ++GL+++A S  ++M+SV  
Sbjct: 459 ITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVG- 517

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P+V TY+ L+ +  K  +      I   M       +AVTY+ +IDG  KA + ++  
Sbjct: 518 CSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKAC 577

Query: 121 SSFSAMVESGG-------------C--HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
             +  ++ + G             C   P++ T  ++I     +  +    +  +     
Sbjct: 578 EVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAA 637

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G + +    + L   + + G  D  + V   M K  + P+V TY  +I+   K G ++  
Sbjct: 638 GCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLA 697

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
            +   +M +    PN +TY +++   SK G I K  ++L  +E      +   +  +I  
Sbjct: 698 MKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDG 757

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            G+ G  +   +LF  M  + C P+ +T+  +I    A G+ + A  L ++M
Sbjct: 758 LGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEM 809



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 155/361 (42%), Gaps = 40/361 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            G CK+      +  +M+++G  P+  ++ +LV  Y  +G    A+   N M +     P
Sbjct: 322 FGWCKR------IINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGS-PP 374

Query: 64  DVYTYSILIKS-CTK-----FHRFDLIEKILAEMSYLGIEC-----SAVTYNTIIDGYGK 112
               Y+I I S C +         DL+EK+  EM  L   C     +   ++  + G GK
Sbjct: 375 GYVAYNIFIGSICGQEELPNAELLDLVEKVYEEM--LAASCVLNKVNTANFSRCLCGVGK 432

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
              FE+       M+  G   PD  T   +I+    +  +EK    + E    GV  D+ 
Sbjct: 433 ---FEKAFQILKEMMRKGFV-PDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVY 488

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T  IL  S+ +AG+ ++ RS  D M+     P VVTY  ++  + K+  + +  + F +M
Sbjct: 489 TYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRM 548

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF-----NCIIS--- 284
                 PN++TY +L+    KAG I K   +  ++  +   +++ F+      C I+   
Sbjct: 549 VDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNV 608

Query: 285 -AYG-------QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             YG       +A  V    EL   M    C P+ I +  +I  +  +G  + AQ +  +
Sbjct: 609 VTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLR 668

Query: 337 M 337
           M
Sbjct: 669 M 669



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 146/321 (45%), Gaps = 16/321 (4%)

Query: 33  TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 92
           T ++S   ++ L +EA S ++ M+  S C P+V TY  L+    K  +F   ++I+  M 
Sbjct: 275 TQMISGLMEASLFNEAMSFLHRMRCNS-CIPNVVTYRTLLSGFLKKKQFGWCKRIINMMM 333

Query: 93  YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA------Y 146
             G   +   +N+++ GY  A  +      F+ M   G   P     N  I +       
Sbjct: 334 TEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGS-PPGYVAYNIFIGSICGQEEL 392

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA----GMYDKMRSVMDFMQKRFF 202
            N+  ++ +EK Y E  ++     +  +N  T ++ R     G ++K   ++  M ++ F
Sbjct: 393 PNAELLDLVEKVYEE--MLAASCVLNKVN--TANFSRCLCGVGKFEKAFQILKEMMRKGF 448

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P   TY  VI    +A  +EK    F++MK  G+ P+  TY  L+ ++ KAGLI +  S
Sbjct: 449 VPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARS 508

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
              ++ +     +   +  ++ AY ++  + +  ++F  M +  C P+ +T++ +I    
Sbjct: 509 WFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLC 568

Query: 323 ALGMTEAAQNLENKMIAMKEN 343
             G  + A  +  K+I    N
Sbjct: 569 KAGEIQKACEVYEKLIGTSGN 589



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 3/150 (2%)

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
           + LN+L +   R G++D+    +  ++   + P+ VTYN +++    AG +E      K+
Sbjct: 170 RLLNVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKE 229

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M   G   +  T      A  K G   +    L  +E  D  LDT     +IS   +A  
Sbjct: 230 MSASGFCMDRSTIGYFAQALCKVG---RWADALNMLEKEDFNLDTVLCTQMISGLMEASL 286

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAY 321
             +       M+   C+P+ +T+ T++  +
Sbjct: 287 FNEAMSFLHRMRCNSCIPNVVTYRTLLSGF 316



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 12/191 (6%)

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           ++L++ C +   +D   + L  +   G   SAVTYN ++     A + E        M  
Sbjct: 173 NVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSA 232

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT----KSYGRA 184
           SG C        S I  +  +  + K+ +W +  N++  K D     +L          A
Sbjct: 233 SGFCMD-----RSTIGYFAQA--LCKVGRWADALNMLE-KEDFNLDTVLCTQMISGLMEA 284

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
            ++++  S +  M+     P VVTY  ++  F K       +     M   G  PN   +
Sbjct: 285 SLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLF 344

Query: 245 CSLVSAYSKAG 255
            SLV  Y  AG
Sbjct: 345 NSLVHGYCNAG 355



 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 17/194 (8%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + + +  LF+ M S G  P+   Y  L++    +GLLDEA   +++MK     K 
Sbjct: 758 LGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPK- 816

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            +  Y   ++  +K  +F     +L EM        A  Y  +ID + KA + E      
Sbjct: 817 HLQGYHCAVQGFSK--KFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELH 874

Query: 124 SAMVESGGCHPDIFTLN--------SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
             +VE         +LN        S+I A   +  +E+    Y E    G+  D+    
Sbjct: 875 KELVEVSS------SLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFV 928

Query: 176 ILTKSYGRAGMYDK 189
            L K       +D+
Sbjct: 929 SLVKGLIEVNKWDE 942


>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 154/328 (46%), Gaps = 14/328 (4%)

Query: 4   LGKCKQPEQASLLFEVML----SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           L + +Q  + +++ EV+L     D     +  +  +++AYG+ G    A  +  +M+ V 
Sbjct: 78  LIRLRQLNKWTMVLEVLLWLKQQDWWNFGIHDFNLMIAAYGKLGQPGIAELSFTEMREVG 137

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +P+V  ++ L+++  +   F   E I  EM   G   + VTY   I+   KA++F + 
Sbjct: 138 -LEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPTEVTYQVYINALCKAERFNDA 196

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL-- 177
           E  F  + ES    PD    N M+  YG +G   + +  + +    GV   + T N L  
Sbjct: 197 ERIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALFRQMKGAGVPMTVVTFNSLMA 256

Query: 178 -TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
             K+   A       + +  MQ     P V+TY  +I  + KA  +E+    F++M   G
Sbjct: 257 FQKTVADA------EACLRHMQAAKIKPDVITYTGLINAYSKARRVEEAHVVFREMVASG 310

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           ++P+ I Y +L+ AY+K   +   +S+ + +       D   +  +++AY   G+++K  
Sbjct: 311 LRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAE 370

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNAL 324
            L   MK+    P+ +T+ T++Q Y ++
Sbjct: 371 RLLKRMKQAGLEPNVVTYGTLMQGYTSV 398



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 147/348 (42%), Gaps = 33/348 (9%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  QP  A L F  M   GL+P+V  +T+L+ A+ ++G    A S   +M        +
Sbjct: 118 GKLGQPGIAELSFTEMREVGLEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPTE 177

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSF 123
           V TY + I +  K  RF+  E+I   +      +  A  YN ++  YGKA KF E ++ F
Sbjct: 178 V-TYQVYINALCKAERFNDAERIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALF 236

Query: 124 SAMVESG----------------------GC---------HPDIFTLNSMISAYGNSGNI 152
             M  +G                       C          PD+ T   +I+AY  +  +
Sbjct: 237 RQMKGAGVPMTVVTFNSLMAFQKTVADAEACLRHMQAAKIKPDVITYTGLINAYSKARRV 296

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           E+    + E    G++      N L  +Y +    +   S+   M +    P + +Y  +
Sbjct: 297 EEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTL 356

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           +  +   G+++K E   K+MK  G++PN +TY +L+  Y+    I  +      ++ + +
Sbjct: 357 LAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFEDLQKAGI 416

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             ++  F  ++  +GQ  D E     F  M +  C  D  + A ++ A
Sbjct: 417 KPNSTIFTLLVRTFGQQEDFESALSWFKKMLDSGCPADQRSRAALMDA 464



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 4/205 (1%)

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I   N MI+AYG  G     E  + E   +G++ ++     L +++ R G + +  S+  
Sbjct: 107 IHDFNLMIAAYGKLGQPGIAELSFTEMREVGLEPNVACFTSLLEAHARTGNFVRAESIYQ 166

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKA 254
            M K    PT VTY + I    KA      E  FK +      KP++  Y  ++  Y KA
Sbjct: 167 EMLKTGPAPTEVTYQVYINALCKAERFNDAERIFKCLDESAEAKPDARLYNLMLHTYGKA 226

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G   +  ++ RQ++ + V +    FN +++      D E        M+     PD IT+
Sbjct: 227 GKFSEQQALFRQMKGAGVPMTVVTFNSLMAFQKTVADAEA---CLRHMQAAKIKPDVITY 283

Query: 315 ATMIQAYNALGMTEAAQNLENKMIA 339
             +I AY+     E A  +  +M+A
Sbjct: 284 TGLINAYSKARRVEEAHVVFREMVA 308


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 158/360 (43%), Gaps = 42/360 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++E M   G K  +  Y  L+ A  ++G++D+AF    DMK    C PD YTY+ILI+  
Sbjct: 150 VYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ-KHCVPDAYTYTILIRMS 208

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R         EM   G   + + +NTII+  GK K  +++    S MVE+  C P+
Sbjct: 209 GKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVEN-DCQPN 267

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNE-FNLMGVKADIQTLNILTKSYGRAGMYDKMRSV- 193
            FT +  +      G + ++    NE  ++     +    + L KS  ++G   +  +V 
Sbjct: 268 QFTYSITLDILATEGQLHRL----NEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVF 323

Query: 194 ----------------------------------MDFMQKRFFFPTVVTYNIVIETFGKA 219
                                             +  M ++     V  YN+V    GK 
Sbjct: 324 CRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKL 383

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
             +  +   F KMK  G+ P+  TY  ++S+Y + GL+ K   +   +E S    D   +
Sbjct: 384 KQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTY 443

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I+  G+ GD+++   LF  M+E+   PD  T++ +I+ +      E A +L ++MI+
Sbjct: 444 NSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMIS 503



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 160/346 (46%), Gaps = 32/346 (9%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M GK  +  +    F+ M+S G   ++  +  ++ A G++ ++D+    ++ M   +DC+
Sbjct: 207 MSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVE-NDCQ 265

Query: 63  PDVYTYSI---LIKSCTKFHRFDLIEKILAEM------SYLGIEC-----SAVTYNTIID 108
           P+ +TYSI   ++ +  + HR + +  I +        SYL         ++  +N    
Sbjct: 266 PNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCR 325

Query: 109 GYGKAKK-----FEEM-------ESSFSA-----MVESGGCHPDIFTLNSMISAYGNSGN 151
            +   +K     F  M       E +  A     M+   G   D+   N + SA G    
Sbjct: 326 MWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQ 385

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +  +   +++    G+  D+ T NI+  SYGR G+ DK   + + M+     P VVTYN 
Sbjct: 386 VSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNS 445

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I   GK G +++    FK+M+ +G  P+  TY  L+  + K+  +    S+  ++ +  
Sbjct: 446 LINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEG 505

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
              +   +N ++    + G  E+  +L+ TMK++  +PD+IT++ +
Sbjct: 506 CTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV  Y+++  +  K  +   I  +  +M   GI     TYN +I  YG+    ++    F
Sbjct: 369 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 428

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E+  C PD+ T NS+I+  G  G++++    + E    G   D+ T +IL + +G+
Sbjct: 429 EVM-EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGK 487

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +   +   S+ D M      P +VTYNI+++   + G  E+  + ++ MK +G+ P+SIT
Sbjct: 488 SNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSIT 547

Query: 244 YCSLVSAYSKAGLIMKVDSILR 265
           Y  L    S++   +++    R
Sbjct: 548 YSILERLESRSQRTVRIRKPTR 569



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 119/300 (39%), Gaps = 33/300 (11%)

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YTY  ++++  +        ++  EM   G +     YN ++D   KA   ++    F  
Sbjct: 129 YTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFED 188

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M +   C PD +T   +I   G +G   K   +++E    G   ++   N + ++ G+  
Sbjct: 189 MKQK-HCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNK 247

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNI--------------------------------VI 213
           M DK+  V+  M +    P   TY+I                                ++
Sbjct: 248 MVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLV 307

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
           ++  K+GH  +    F +M +   K +   + S++     A   ++   +L  +    ++
Sbjct: 308 KSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIV 367

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   +N + SA G+   V  +  LF  MK    +PD  T+  MI +Y  +G+ + A  L
Sbjct: 368 TDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASEL 427



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 99/234 (42%), Gaps = 4/234 (1%)

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           + L   S  G+  S  TY  I+  + ++++  +    +  M    G   DIF  N ++ A
Sbjct: 114 RCLELASKWGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEM-RRKGYKLDIFAYNMLLDA 172

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
              +G +++  + + +        D  T  IL +  G+AG   K  S  D M  +     
Sbjct: 173 LAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLN 232

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           ++ +N +IE  GK   ++K+     KM     +PN  TY   +   +  G + +++ +L 
Sbjct: 233 LIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVL- 291

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
             +     ++   ++ ++ +  ++G   +   +F  M   H   D   F +M++
Sbjct: 292 --DICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLE 343



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN--- 151
           G    A +YN I+    + +          A +E  G   +I T+N ++   G       
Sbjct: 55  GFRHDAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEMER 114

Query: 152 -IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            +E   KW       G++    T   + +++ R+    K   V + M+++ +   +  YN
Sbjct: 115 CLELASKW-------GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYN 167

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           ++++   KAG +++  + F+ MK +   P++ TY  L+    KAG   K  S   ++ + 
Sbjct: 168 MLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSK 227

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             +L+   FN II A G+   V+K+  +   M E  C P+  T++  +
Sbjct: 228 GCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITL 275



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 63/131 (48%)

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  +++   ++  + K  + +++M+ +G K +   Y  L+ A +KAG++ +   +   +
Sbjct: 130 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 189

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           +    + D   +  +I   G+AG   K    F  M  + CV + I F T+I+A     M 
Sbjct: 190 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMV 249

Query: 328 EAAQNLENKMI 338
           +    + +KM+
Sbjct: 250 DKVIFVLSKMV 260



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           RAG  + +R V D M++      + T N+++   G    +E+  E   K    G++ +  
Sbjct: 74  RAGPSEALRLVAD-MERDGVAGNISTINLLVGMGGGGVEMERCLELASKW---GLRLSGY 129

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  +V A+ ++  + K   +  ++      LD   +N ++ A  +AG V++  ++F  M
Sbjct: 130 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 189

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           K++HCVPD  T+  +I+     G T    +  ++M++
Sbjct: 190 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVS 226


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 154/342 (45%), Gaps = 6/342 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K +  + A  +FE M       +   Y  ++S   +SG ++EAF    +M       PD 
Sbjct: 255 KARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYG-LSPDA 313

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           +TY  L+    K  R    + +L EMS  G++ + V Y T++DG+ K  K  E       
Sbjct: 314 FTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKE 373

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+ S G  P+    +++I      G + +  K   E   +G++ D  T N L + + +  
Sbjct: 374 MI-SAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQH 432

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D    +++ M+     P V +Y I+I    + G  ++     ++M   G+KPN+  Y 
Sbjct: 433 DKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYA 492

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+  +SK G I      L ++  ++V  D   +N +I      G +E+  E +  +++R
Sbjct: 493 PLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKR 552

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
             VPD  T++ +I  Y   G  E A  L  +M+    NSG K
Sbjct: 553 GLVPDEFTYSGLIHGYCKTGNLEKADQLLRQML----NSGLK 590



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 152/322 (47%), Gaps = 8/322 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G CK  + ++A  L + M   GLKP++ VY  LV  + + G   EAF  + +M S  
Sbjct: 319 LMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAG 378

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +P+   Y  LI+   K  +     K+L EM  +G+     TYN ++ G+ +     + 
Sbjct: 379 -VQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQ---HDK 434

Query: 120 ESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           + +F  + E  + G  P++++   MI+    +G  ++      E    G+K +      L
Sbjct: 435 DGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPL 494

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              + + G        ++ M K    P +  YN +I+     G +E+ EEY+ +++ RG+
Sbjct: 495 IIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGL 554

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P+  TY  L+  Y K G + K D +LRQ+ NS +  +   +  ++  Y ++ D EK+  
Sbjct: 555 VPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSS 614

Query: 298 LFLTMKERHCVPDNITFATMIQ 319
           +  +M      PDN  +  +I+
Sbjct: 615 ILQSMLGSGDKPDNHIYGIVIR 636



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 156/340 (45%), Gaps = 4/340 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  Q  +AS L + M+  GL+P    Y  L+  + Q    D AF  +N+M++ S
Sbjct: 389 LIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRN-S 447

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P+VY+Y I+I    +         +L EM   G++ +A  Y  +I G+ K       
Sbjct: 448 GILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLA 507

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
             +   M ++   HPD+F  NS+I      G +E+ E++Y +    G+  D  T + L  
Sbjct: 508 CEALEKMTKAN-VHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIH 566

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y + G  +K   ++  M      P   TY  ++E + K+   EK+    + M   G KP
Sbjct: 567 GYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKP 626

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           ++  Y  ++   S++  +     +L +VE + ++ D   ++ +IS   +  D+EK   L 
Sbjct: 627 DNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLL 686

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             M +    P  + +  +I  +   G    A+N+ + ++A
Sbjct: 687 DEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILA 726



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 143/305 (46%), Gaps = 2/305 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L   M + G+ P+V  Y  +++   Q+G   EA + + +M S    KP+ + Y+ LI   
Sbjct: 440 LLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMIS-EGLKPNAFMYAPLIIGH 498

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           +K     L  + L +M+   +      YN++I G     + EE E  + A V+  G  PD
Sbjct: 499 SKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYY-AQVQKRGLVPD 557

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            FT + +I  Y  +GN+EK ++   +    G+K +  T   L + Y ++  Y+K+ S++ 
Sbjct: 558 EFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQ 617

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M      P    Y IVI    ++ ++E       +++  G+ P+   Y SL+S   K  
Sbjct: 618 SMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIA 677

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + K   +L ++    +      +N +I  + ++GD+ +   +F ++  +  VP+ +T+ 
Sbjct: 678 DMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYT 737

Query: 316 TMIQA 320
            +I  
Sbjct: 738 ALIDG 742



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 162/371 (43%), Gaps = 40/371 (10%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSG------------------- 43
           G C+  E  +A  L E M+S+GLKP+  +Y  L+  + + G                   
Sbjct: 462 GLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHP 521

Query: 44  ------LLDEAFSTINDMKSVSD---------CKPDVYTYSILIKSCTKFHRFDLIEKIL 88
                  L +  ST+  M+   +           PD +TYS LI    K    +  +++L
Sbjct: 522 DLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLL 581

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            +M   G++ +A TY  +++GY K+  +E++ S   +M+ SG   PD      +I     
Sbjct: 582 RQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGD-KPDNHIYGIVIRNLSR 640

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           S N+E       E    G+  D+   + L     +    +K   ++D M K    P +V 
Sbjct: 641 SENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVC 700

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +I+ F ++G I +    F  +  +G+ PN +TY +L+    K G I     + +++ 
Sbjct: 701 YNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEML 760

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT-FATMIQAYNALGMT 327
           +  +  D   +N + +    A D+E+   LFLT +  +    N++ F T++  +   G  
Sbjct: 761 DRGIAPDAFVYNVLATGCSDAADLEQ--ALFLTEEMFNRGYANVSLFNTLVHGFCKRGKL 818

Query: 328 EAAQNLENKMI 338
           +  + L + M+
Sbjct: 819 QETEKLLHVMM 829



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 130/301 (43%), Gaps = 40/301 (13%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    E+A  L   ML+ GLKP+ D YT L+  Y +S   ++  S +  M    D K
Sbjct: 567 GYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGD-K 625

Query: 63  PDVYTYSILIKSCTKFHRFDL-------IEK----------------------------I 87
           PD + Y I+I++ ++    ++       +EK                            +
Sbjct: 626 PDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGL 685

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
           L EM+  G+E   V YN +IDG+ ++       + F +++ + G  P+  T  ++I    
Sbjct: 686 LDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSIL-AKGLVPNCVTYTALIDGNC 744

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            +G+I      Y E    G+  D    N+L      A   ++   + + M  R +   V 
Sbjct: 745 KNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY-ANVS 803

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            +N ++  F K G +++ E+    M  R + PN+ T   +VS + KAG + +   +  ++
Sbjct: 804 LFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAEL 863

Query: 268 E 268
           +
Sbjct: 864 Q 864



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/336 (20%), Positives = 138/336 (41%), Gaps = 19/336 (5%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           P+   LL +++L+    P       LV A  Q  + D       D +S S   P      
Sbjct: 132 PQANGLLHQMILAHPHPP-------LVLASIQRAIQD------TDHRSRSP-SPSTAVLD 177

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           +L+ +  K        +++  M+ LG+  +    N ++    +A   E +       +E 
Sbjct: 178 VLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELL-WKLKGFMEG 236

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G  PD++T ++ I A+  + + +  +K + E        +  T N++     R+G  ++
Sbjct: 237 AGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEE 296

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
                + M      P   TY  ++    K   +++ +    +M   G+KPN + Y +LV 
Sbjct: 297 AFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVD 356

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            + K G   +   IL+++ ++ V  +   ++ +I    + G + +  +L   M +    P
Sbjct: 357 GFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRP 416

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
           D  T+  ++Q +      + A  L N+M     NSG
Sbjct: 417 DTFTYNPLMQGHFQQHDKDGAFELLNEM----RNSG 448


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 151/335 (45%), Gaps = 1/335 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            +   P+ A  L     + GL P  +  TAL+SA G +G + EA +   +     + KP 
Sbjct: 239 ARAALPDAALELLASAQAIGLTPRSNAVTALISALGSAGRVAEAEALFLEFFLAGEIKPR 298

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+ L+K   +       E++L EMS  G+     TY+ ++D Y +A ++E       
Sbjct: 299 TRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLK 358

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+ G  P  +  + +++ + + G+ +K      E    GV+ D    N++  ++G+ 
Sbjct: 359 EM-EADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKY 417

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
                     D M++    P VVT+N +I+   K G  ++  E F++M+     P + TY
Sbjct: 418 NCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTY 477

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +++   +      V+++L +++   ++ +   +  ++  YG++G  ++  +    MK 
Sbjct: 478 NIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKA 537

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
               P    +  ++ AY   G+ + A N+   M A
Sbjct: 538 DGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKA 572



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 166/346 (47%), Gaps = 39/346 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--KPDVYTY 68
           E  +L  E  L+  +KP    Y AL+  Y + G L  A   +++M   S C   PD  TY
Sbjct: 281 EAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEM---SQCGVAPDEATY 337

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKK----FEEMES 121
           S+L+ + T+  R++    +L EM   G++ S+  ++ I+ G+   G  +K      EM++
Sbjct: 338 SLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQA 397

Query: 122 S--------FSAMVESGG-------------------CHPDIFTLNSMISAYGNSGNIEK 154
           S        ++ M+++ G                     PD+ T N++I A+   G  ++
Sbjct: 398 SGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDR 457

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             + + E           T NI+    G    ++ + +++  M+++   P ++TY  +++
Sbjct: 458 AMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVD 517

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +G++G  ++  +  + MK  G+KP+   Y +LV+AY++ GL     ++++ ++   + +
Sbjct: 518 VYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEV 577

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
                N +I+A+G+   V +   +   MKE    PD IT+ T+++A
Sbjct: 578 SILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKA 623



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 151/314 (48%), Gaps = 10/314 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M++ S  +PD + Y++
Sbjct: 351 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQA-SGVRPDRHFYNV 409

Query: 71  LIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +I +  K+    H  D  +++  E     IE   VT+NT+ID + K  + +     F  M
Sbjct: 410 MIDTFGKYNCLGHAMDAFDRMREE----EIEPDVVTWNTLIDAHCKGGRHDRAMELFEEM 465

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            ES  C P   T N MI+  G     E +E   +E    G+  +I T   L   YGR+G 
Sbjct: 466 RESN-CPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGR 524

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y +    ++ M+     P+   Y+ ++  + + G  +      K MK  G++ + +   S
Sbjct: 525 YKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNS 584

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++A+ +   +++  S+L+ ++ + +  D   +  ++ A  +    +K+  ++  M    
Sbjct: 585 LINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSG 644

Query: 307 CVPDNITFATMIQA 320
           C PD    A +  A
Sbjct: 645 CAPDRKARAMLRSA 658



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 141/323 (43%), Gaps = 43/323 (13%)

Query: 60  DCKPDVYTYSILIKSCTKFHRFD---LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           D  PD+ +YS L+ S           L+E++L ++    +E  A  ++ +I  + +A   
Sbjct: 185 DFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAA-L 243

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLN 175
            +      A  ++ G  P    + ++ISA G++G + + E  + EF L G +K   +  N
Sbjct: 244 PDAALELLASAQAIGLTPRSNAVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRAYN 303

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L K Y R G       V+D M +    P   TY+++++ + +AG  E      K+M+  
Sbjct: 304 ALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEAD 363

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ------- 288
           G+KP+S  +  +++ +   G   K  ++LR+++ S V  D  F+N +I  +G+       
Sbjct: 364 GVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHA 423

Query: 289 ----------------------------AGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
                                        G  ++  ELF  M+E +C P   T+  MI  
Sbjct: 424 MDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMI-- 481

Query: 321 YNALGMTEAAQNLENKMIAMKEN 343
            N LG  E  + +E  +  MKE 
Sbjct: 482 -NLLGEQERWEGVEAMLSEMKEQ 503


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 137/289 (47%), Gaps = 5/289 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E  +A  L++ M+     P+V  Y A ++   + G + +A     +M S + C 
Sbjct: 166 GFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMIS-AGCS 224

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TYS LI   +   + D   ++   M   G   +AVTYN ++ G  K  K +E    
Sbjct: 225 PDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHEL 284

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MVE G C PD  T  +++  + N G IE+  + ++E    G   D+   N L K + 
Sbjct: 285 FRKMVERG-CDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFF 343

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNS 241
           RAG   + R +   M  R   P  V++NI+I+   KA  ++   E F++M+   G  P+ 
Sbjct: 344 RAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDL 403

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
           +TY SL+        + +   + ++++   +  D   FN ++ A   AG
Sbjct: 404 VTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYAAG 452



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 146/320 (45%), Gaps = 9/320 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM-KSVSDCK 62
           L K  + + A  L E M+  G  P +  ++ L++   ++  + EA   +  M +++S   
Sbjct: 59  LCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRA 118

Query: 63  PDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              ++Y+ L+ S  K  +    F +   +++E S +      V+Y+ +IDG+ K  +   
Sbjct: 119 SSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVP---DVVSYSILIDGFCKIDELGR 175

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E  +  M++   C P++ T N+ ++     G I   +  Y E    G   D+ T + L 
Sbjct: 176 AEKLYKQMIDLN-CVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLI 234

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             +  A  +D+   + + M  R   P  VTYN ++    K    ++  E F+KM  RG  
Sbjct: 235 HGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCD 294

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ +TY +L+  +   G I +   +  ++ +     D   +NC++  + +AG   +  +L
Sbjct: 295 PDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQL 354

Query: 299 FLTMKERHCVPDNITFATMI 318
           F  M  R C PD ++   MI
Sbjct: 355 FQVMVSRECKPDTVSHNIMI 374



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 134/288 (46%), Gaps = 2/288 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y +L+++  ++  + +AF+  + M S     PDV +YSILI    K       EK+  +M
Sbjct: 124 YNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQM 183

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
             L    +  TYN  ++G  +  +  + +  +  M+ S GC PD+ T +++I  +  +  
Sbjct: 184 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMI-SAGCSPDVITYSTLIHGFSLARK 242

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            ++  + +      G + +  T N L     +    D+   +   M +R   P  VTY  
Sbjct: 243 HDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTT 302

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           ++  F   G IE+  E F +M  +G  P+ + Y  L+  + +AG   +   + + + + +
Sbjct: 303 LLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRE 362

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVPDNITFATMI 318
              DT   N +I    +A  ++   E+F  M++ H C PD +T+ ++I
Sbjct: 363 CKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLI 410



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 130/308 (42%), Gaps = 38/308 (12%)

Query: 34  ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 93
           +++    ++G +D A S +  M     C PD+ T+S+LI    K  +    ++ L  M+ 
Sbjct: 54  SVIQELCKAGRVDSALSLLETMIKRGYC-PDMATHSMLINELCKADKIQEAQEFLQGMNR 112

Query: 94  L--GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
                  S  +YN++++   KAKK  +  + FS MV      PD+ + + +I  +     
Sbjct: 113 TISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDE 172

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           + + EK Y +   +    ++ T N       R G     + V + M      P V+TY+ 
Sbjct: 173 LGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYST 232

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I  F  A   ++  E F+ M  RG +PN++TY                           
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTY--------------------------- 265

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
                   NC++    +    ++  ELF  M ER C PD +T+ T++  +  +G  E A 
Sbjct: 266 --------NCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAV 317

Query: 332 NLENKMIA 339
            + ++M++
Sbjct: 318 EVFDEMVS 325


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 158/340 (46%), Gaps = 19/340 (5%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+ + A   F   L   + P +  +  ++S   + G L +A     D+K+     P V T
Sbjct: 170 KRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWG-LAPSVAT 228

Query: 68  YSILIKS-CTKFHRFDL--IEKILAEMSYLGIECSAVTYNTIIDGYGK-------AKKFE 117
           Y+ LI   C K    ++  ++ +L EM   GI  +AVT+  +I+GY K        + FE
Sbjct: 229 YNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFE 288

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           EM+          G    + T NS+IS   + G +E+  K   E   +G+  +  T   +
Sbjct: 289 EMKQQ--------GIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCV 340

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            K + + GM       +D M +R   P VV YNI+I+ + + G +E      + M  +G+
Sbjct: 341 LKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGI 400

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            PN  TY  L++ +S++G       +L +++   +  D   +N +I A    G+V K  +
Sbjct: 401 SPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVK 460

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           L   M E    P+++T+ T+IQ +   G  ++A  +  +M
Sbjct: 461 LLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 149/341 (43%), Gaps = 5/341 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C+  Q  +A  + + + + GL PSV  Y +L+  Y + G     +     +K + 
Sbjct: 197 VISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMV 256

Query: 60  DC--KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           +    P   T+ +LI    K        ++  EM   GI  S VTYN++I G     K E
Sbjct: 257 EAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVE 316

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E       M E  G  P+  T   ++  +   G +     W +      V+ D+   NIL
Sbjct: 317 EGVKLMEEM-EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNIL 375

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              Y R G  +   +V + M K+   P V TYN +I  F ++G          +MK +G+
Sbjct: 376 IDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGI 435

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           + + +TY  L+ A    G + K   +L ++    +  +   +N II  +   G+++   E
Sbjct: 436 EADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYE 495

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +   M++     + +T+   I+ +  +G  + A +L N+M+
Sbjct: 496 IRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEML 536



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 132/306 (43%), Gaps = 2/306 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
              +L + M+  G+ P+   +  L++ Y ++     A     +MK        V TY+ L
Sbjct: 247 HVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQ-QGIAASVVTYNSL 305

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       + +   K++ EM  LG+  + +T+  ++ G+ K     +       M E   
Sbjct: 306 ISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN- 364

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+   N +I  Y   G +E            G+  ++ T N L   + R+G +    
Sbjct: 365 VEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++D M+++     VVTYN++I      G + K  +   +M   G++PN +TY +++  +
Sbjct: 425 GLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGF 484

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G I     I  ++E      +   +N  I  + Q G +++  +L   M ++  VP+ 
Sbjct: 485 CDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNG 544

Query: 312 ITFATM 317
           IT+ T+
Sbjct: 545 ITYETI 550



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 121/279 (43%), Gaps = 4/279 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +P   + + L+       R DL EK         +     T+NT+I G  +  +  +   
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRK-AG 211

Query: 122 SFSAMVESGGCHPDIFTLNSMISAY---GNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             +  +++ G  P + T NS+I  Y   G +GN+  ++    E    G+     T  +L 
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             Y +         V + M+++    +VVTYN +I      G +E+  +  ++M+  G+ 
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN IT+  ++  + K G++   +  +  +   +V  D   +N +I  Y + G +E    +
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAV 391

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              M ++   P+  T+  +I  ++  G   +A  L ++M
Sbjct: 392 KEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 122 SFSAMVESGGCHP----DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           ++ A + +G  HP       ++N++++    +  ++  EK +       V  DI T N +
Sbjct: 138 AYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTV 197

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF---GKAGHIEKMEEYFKKMKH 234
                R G   K   V   ++     P+V TYN +I+ +   G AG++  ++   K+M  
Sbjct: 198 ISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVE 257

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+ P ++T+  L++ Y K         +  +++   +      +N +IS     G VE+
Sbjct: 258 AGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEE 317

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +L   M++    P+ ITF  +++ +   GM   A +  + M
Sbjct: 318 GVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGM 360


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 157/334 (47%), Gaps = 2/334 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K    E+   L  +M     KP V  Y+ ++ A  +   LD A + +N+MK   +  P
Sbjct: 178 LSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQ-KNIPP 236

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +++TY+ LI    K  +++ ++ +L+EM  L I  +  T++ +IDG  K  K E+ +   
Sbjct: 237 NIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVM 296

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+E G   PDI T ++++  Y   G +++  + +N     G+K +I + +IL   Y +
Sbjct: 297 RHMIEKG-VEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCK 355

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
                K   +   + ++   P  VTY+ ++    + G I   ++ F +M   G  P+   
Sbjct: 356 KKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICL 415

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +L+  Y K GL+ +   +  ++E +    +  F+  +I+   +   V +   +F  + 
Sbjct: 416 HSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLP 475

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               +PD  T+  MI  +   G+ +  + +  KM
Sbjct: 476 SIGLIPDVRTYNVMITGFCREGLFDEVKGILRKM 509



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 144/334 (43%), Gaps = 38/334 (11%)

Query: 12  QASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            A +LF+ ++ + + +P+  +Y  +++   + G  ++  S +  M+   + KPDV TYSI
Sbjct: 150 DAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQ-GNTKPDVRTYSI 208

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I +  K    D    +L EM    I                                  
Sbjct: 209 VIDALCKDINLDAAINLLNEMKQKNIP--------------------------------- 235

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P+IFT NS+I      G  EK++   +E   + +  ++ T +IL     + G  +  
Sbjct: 236 ---PNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDA 292

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             VM  M ++   P ++TY+ +++ +   G +++    F  ++ +G+KPN  +Y  L++ 
Sbjct: 293 DEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILING 352

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K   + K   +  ++    +  DT  ++ I+    + G +    ++F  M      PD
Sbjct: 353 YCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPD 412

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
               +T++  Y   G+ E A  L +K+   +E++
Sbjct: 413 ICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDT 446



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 130/283 (45%), Gaps = 39/283 (13%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E A  +   M+  G++P +  Y+A++  Y   G +D A    N ++     K
Sbjct: 282 GLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRD-KGIK 340

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++++YSILI    K        ++  E+S  G++   VTY+TI+ G  +  +  + +  
Sbjct: 341 PNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKI 400

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIE-------KMEKWYNEFNL----------- 164
           F  M+  G   PDI   ++++  Y   G +E       K+E+   + N+           
Sbjct: 401 FDEMLRVGPT-PDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLC 459

Query: 165 -----------------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
                            +G+  D++T N++   + R G++D+++ ++  M+        +
Sbjct: 460 KNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNI 519

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           TYN++++ F ++  I ++  + K+M  RG   ++ T   L++ 
Sbjct: 520 TYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINV 562



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 133/315 (42%), Gaps = 9/315 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK----SVSDCKPDVY 66
           + A  LF  M+     PSV  ++ L              S   +M+     +SD   ++ 
Sbjct: 44  DDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIV 103

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           T S  ++     HR D    +L      GI  + VT+NT++ G     K  +    F  +
Sbjct: 104 TNSYCLR-----HRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKL 158

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           V    C P+     ++++     G+ EK             K D++T +I+  +  +   
Sbjct: 159 VREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDIN 218

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D   ++++ M+++   P + TYN +I+   K G  EK++    +M +  + PN  T+  
Sbjct: 219 LDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSI 278

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+    K G +   D ++R +    V  D   ++ I+  Y   G V++   +F  ++++ 
Sbjct: 279 LIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKG 338

Query: 307 CVPDNITFATMIQAY 321
             P+  +++ +I  Y
Sbjct: 339 IKPNIFSYSILINGY 353



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 1/211 (0%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P +   + +     N  +   +   + E  ++G+      LNI+T SY      D   SV
Sbjct: 60  PSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSV 119

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM-KHRGMKPNSITYCSLVSAYS 252
           +    K      VVT+N ++        +      FKK+ + +  +PN + Y ++++  S
Sbjct: 120 LPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLS 179

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           K G   K  S+LR +E  +   D   ++ +I A  +  +++    L   MK+++  P+  
Sbjct: 180 KRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIF 239

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           T+ ++I     LG  E  + L ++M+ +  N
Sbjct: 240 TYNSLIDGLCKLGQWEKVKTLLSEMVNLNIN 270


>gi|242053311|ref|XP_002455801.1| hypothetical protein SORBIDRAFT_03g025430 [Sorghum bicolor]
 gi|241927776|gb|EES00921.1| hypothetical protein SORBIDRAFT_03g025430 [Sorghum bicolor]
          Length = 642

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 153/319 (47%), Gaps = 3/319 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG  + P +A  ++  +    +K  V V  +++    ++G LD +F   ++M       P
Sbjct: 124 LGLSRDPARALQVYGAIKDQTMKVHVSVCNSVLGCLVKNGRLDSSFKLYDEMIR-EGLSP 182

Query: 64  DVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           D +TYS L+  C K  + +    +++ +M   G++   V Y T++         EE E  
Sbjct: 183 DPFTYSTLLSGCMKLKQGYTKAMELINDMKSRGLQMDIVIYGTLLAICASHNYCEEAEVY 242

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M + G C P++F  +S+++AY  + + EK E    +    G+  +   L  L K Y 
Sbjct: 243 FQKMKDEGHC-PNLFHYSSLLNAYSENSDYEKAELLMKDLRSSGLTPNKVILTTLLKVYS 301

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G+++K + ++  ++   F    + Y I+I+   K G I++ +  F +MK +G+K +  
Sbjct: 302 KGGLFEKAKELLTELEASGFAQDEMPYCILIDGLVKGGKIQEAKILFNEMKEKGVKSDGY 361

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            +  ++SA  + G   +   + ++ E+ +   D    N  +  Y    D+E +  +   M
Sbjct: 362 AFSIMISALHRGGHHEESKQLAKEFESENASYDLVMLNTSLRTYCSTNDMESVMRMLKKM 421

Query: 303 KERHCVPDNITFATMIQAY 321
            E +  PDNITF T+I+ +
Sbjct: 422 DELNISPDNITFNTLIRYF 440



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 116/270 (42%), Gaps = 18/270 (6%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A LL + + S GL P+  + T L+  Y + GL ++A   + ++++ S    D   Y I
Sbjct: 272 EKAELLMKDLRSSGLTPNKVILTTLLKVYSKGGLFEKAKELLTELEA-SGFAQDEMPYCI 330

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  +    + +  EM   G++     ++ +I    +    EE     +   ES 
Sbjct: 331 LIDGLVKGGKIQEAKILFNEMKEKGVKSDGYAFSIMISALHRGGHHEE-SKQLAKEFESE 389

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD-K 189
               D+  LN+ +  Y ++ ++E + +   + + + +  D  T N L + +  + +Y   
Sbjct: 390 NASYDLVMLNTSLRTYCSTNDMESVMRMLKKMDELNISPDNITFNTLIRYFCNSKVYHLA 449

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAG------HIEKMEEYFKKMKHRGMKPNSIT 243
            ++V D   K       +  +++++  GK G       +  M  Y K+  H+ +   ++ 
Sbjct: 450 YKTVEDMHTKGHQLNEELCSHVMVQ-LGKGGFPSEAFSLYNMLRYSKRTVHKSLHEKALG 508

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
                    +A +++K        +N+D+I
Sbjct: 509 ILVAAELLKEAYIVVK--------DNADLI 530


>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
 gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
          Length = 574

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 125/260 (48%), Gaps = 1/260 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           K DV+TY+ ++    +   FD++  +L EM   G E + VTYN +I  YG+A   +    
Sbjct: 64  KHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLK 123

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F+ M +  GC PD  T  ++I     +G  +   + Y +    G + D  T +I+    
Sbjct: 124 LFNVM-QMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCL 182

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+AG  +    +   M  R + P++VTYNI+I+   KAG  +   + +  ++  G  P+ 
Sbjct: 183 GKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDR 242

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  ++      G I   + +  ++E +  + D P F  ++  +G+ G+ EK  + F  
Sbjct: 243 VTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNR 302

Query: 302 MKERHCVPDNITFATMIQAY 321
           M +    P+     +++ AY
Sbjct: 303 MLDSGLQPNVPACNSLLSAY 322



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 7/240 (2%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           TY TI+   G+AK F+ + +    M+  G C P++ T N +I  YG + +++   K +N 
Sbjct: 69  TYTTILGILGRAKSFDVLNNLLDEMIREG-CEPNVVTYNRLIHCYGRANDLDSSLKLFNV 127

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
             ++G + D  T   L     +AG +D    +   MQ   F P   TY+I+I   GKAG 
Sbjct: 128 MQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCLGKAGK 187

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDVILDTPF 278
           +    + F +M  RG  P+ +TY  ++  ++KAG   + +K+ S L++V  +    D   
Sbjct: 188 LNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAP---DRVT 244

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  I+   G  G +E   ++F  M+    V DN  F  M+  +   G  E A    N+M+
Sbjct: 245 YGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRML 304



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 145/317 (45%), Gaps = 6/317 (1%)

Query: 8   KQPEQASLLFEVML----SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           KQ ++A + +   +      G K  V  YT ++   G++   D   + +++M     C+P
Sbjct: 42  KQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIR-EGCEP 100

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TY+ LI    + +  D   K+   M  +G E   VTY T+ID   KA  F +     
Sbjct: 101 NVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAG-FHDAAMEL 159

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              ++  G  PD FT + +I   G +G +    K + E    G    + T NI+   + +
Sbjct: 160 YRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAK 219

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG +D    +   +Q+  + P  VTY I++E  G  GHIE  E+ F++M+  G   ++  
Sbjct: 220 AGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPI 279

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           +  +V  + K G   K      ++ +S +  + P  N ++SAY ++   +  G +   M 
Sbjct: 280 FGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMA 339

Query: 304 ERHCVPDNITFATMIQA 320
           +    P   T+ +++ +
Sbjct: 340 KWGLYPTLQTYTSLLSS 356



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 122/262 (46%), Gaps = 2/262 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+ K  +  + L + M+ +G +P+V  Y  L+  YG++  LD +    N M+ V  C+
Sbjct: 76  ILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVG-CE 134

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI    K    D   ++  +M + G      TY+ II   GKA K       
Sbjct: 135 PDRVTYCTLIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKL 194

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M + G   P + T N +I  +  +G  +   K Y++   +G   D  T  I+ +  G
Sbjct: 195 FCEMTDRGYA-PSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLG 253

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  +    V + M++  +      + ++++ +GK G+ EK  ++F +M   G++PN  
Sbjct: 254 NCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVP 313

Query: 243 TYCSLVSAYSKAGLIMKVDSIL 264
              SL+SAY ++        +L
Sbjct: 314 ACNSLLSAYLRSSFYDAAGGVL 335



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 126/292 (43%), Gaps = 3/292 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    + +  LF VM   G +P    Y  L+    ++G  D A      M+  +  +PD
Sbjct: 113 GRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMELYRQMQH-AGFRPD 171

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            +TYSI+I    K  + +   K+  EM+  G   S VTYN IID + KA KF+     +S
Sbjct: 172 TFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYS 231

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + E G   PD  T   ++   GN G+IE  E+ + E    G  AD     ++   +G+ 
Sbjct: 232 DLQEVGYA-PDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKT 290

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  +K     + M      P V   N ++  + ++   +        M   G+ P   TY
Sbjct: 291 GNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTY 350

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
            SL+S+ +      + D++   +  +      PF   ++++ G AG    +G
Sbjct: 351 TSLLSSCAACRAAWEYDALFGLMGGTGHPAH-PFVCSLLASGGTAGGTMVVG 401



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 3/151 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E A  +FE M   G      ++  +V  +G++G  ++A    N M   S 
Sbjct: 249 MEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRMLD-SG 307

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            +P+V   + L+ +  +   +D    +L  M+  G+  +  TY +++      +   E +
Sbjct: 308 LQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCAACRAAWEYD 367

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
           + F  M  +G  HP    + S++++ G +G 
Sbjct: 368 ALFGLMGGTG--HPAHPFVCSLLASGGTAGG 396



 Score = 44.7 bits (104), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 35/132 (26%)

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V TY  ++   G+A   + +     +M   G +PN +TY                     
Sbjct: 67  VHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTY--------------------- 105

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
                         N +I  YG+A D++   +LF  M+   C PD +T+ T+I      G
Sbjct: 106 --------------NRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAG 151

Query: 326 MTEAAQNLENKM 337
             +AA  L  +M
Sbjct: 152 FHDAAMELYRQM 163


>gi|357476703|ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509692|gb|AES90834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 715

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 140/289 (48%), Gaps = 6/289 (2%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y++ +KS     +F +IE++  +M   G+E   +TY+TII    K   F++    F  M 
Sbjct: 193 YNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMY 252

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           ++G   PD  T ++++  Y   G +E++   +      G K D  T ++L K +G AG Y
Sbjct: 253 KTG-LMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDY 311

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D +R V+  M+     P +V YN ++E  GKAG        F++M   G+ PN  T  ++
Sbjct: 312 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAV 371

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-RH 306
           +  Y KA        + ++++ +   +D   +N +++     G +E+   LF  MK+  H
Sbjct: 372 IKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEH 431

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKENSGKKLIQC 351
           C PD+ ++  M+  Y + G  + A  L  +M    I +       LIQC
Sbjct: 432 CKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQC 480



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 159/348 (45%), Gaps = 48/348 (13%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC   ++A   FE M   GL P    ++A++  Y + G ++E  +     ++ +  KPD 
Sbjct: 237 KCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRA-TGWKPDP 295

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            T+S+L K   +   +D I  +L EM  LG++ + V YNT+++  GKA K     S F  
Sbjct: 296 ITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEE 355

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M++S G  P+  TL ++I  YG +       +W                     S     
Sbjct: 356 MIDS-GIAPNEKTLTAVIKIYGKA-------RW---------------------SKDALE 386

Query: 186 MYDKMRS---VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNS 241
           ++ +M+     MDF          + YN ++      G IE+ E  F+ MK     KP+S
Sbjct: 387 LWKRMKENGWPMDF----------ILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDS 436

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            +Y ++++ Y   G + K   +  ++    + L+     C+I   G+A +++ + ++F  
Sbjct: 437 WSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLGKAMEIDDLVKVFDI 496

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
             ER   PD+     ++   + + +++ +++ E K++A  + +  KL+
Sbjct: 497 SVERGVKPDDRLCGCLL---SVVSLSQGSKDQE-KVLACLQRANPKLV 540



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 125/297 (42%), Gaps = 4/297 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M G+    +    + + M S G++P++ VY  L+ A G++G    A S   +M   S   
Sbjct: 304 MFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMID-SGIA 362

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+  T + +IK   K        ++   M   G     + YNT+++        EE E+ 
Sbjct: 363 PNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETL 422

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +S  C PD ++  +M++ YG+ G ++K  K + E +  G++ ++     L +  G
Sbjct: 423 FRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCLG 482

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A   D +  V D   +R   P       ++     +   +  E+    ++     P  +
Sbjct: 483 KAMEIDDLVKVFDISVERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQR--ANPKLV 540

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
            +  L+     +   +K +     + N+ V +  PF NC+I        VE+  EL 
Sbjct: 541 AFIQLIVDEETSFETVK-EEFKAIMSNAVVEVRRPFCNCLIDICRNKDLVERAHELL 596



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 187 YDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           + K     ++++ +   P   + YN+ +++         +EE   +M   G++ ++ITY 
Sbjct: 170 WQKTHMFFNWIKTQNLLPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDGGVELDNITYS 229

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +++S   K  L  K      ++  + ++ D   F+ I+  Y + G VE++  LF   +  
Sbjct: 230 TIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRAT 289

Query: 306 HCVPDNITFATMIQAYNALG 325
              PD ITF+ + + +   G
Sbjct: 290 GWKPDPITFSVLGKMFGEAG 309


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 154/348 (44%), Gaps = 19/348 (5%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  LF+ +L  G+ PS   YT+L+     +   D+A     DM     C P
Sbjct: 333 LAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR-RGCPP 391

Query: 64  DVYTYSILIKSCTKFHRF----DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              TY+++I +  K        DLI+K++ +    G     VTYNT++DG  K+ + EE 
Sbjct: 392 SPVTYNVMIDASCKRGMLEEACDLIKKMIED----GHVPDVVTYNTVMDGLCKSSRVEEA 447

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE------KMEKWYNEFNLM---GVKAD 170
              F+ M E  GC P+  + N++I        I+      K+++ +     M   G   D
Sbjct: 448 LLLFNEM-ERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPD 506

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           + T + L          D  R +++ M KR   PTVVT N +I    KAG I++  E   
Sbjct: 507 VVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD 566

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            M   G  P+ +TY +LV  + +AG   +   +L  +    +  +   +  ++S   +A 
Sbjct: 567 AMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKAN 626

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            + +   +F  MK   C P+  T+  +I  + + G  +    L  +M+
Sbjct: 627 RLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMV 674



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 142/316 (44%), Gaps = 11/316 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK-PDVYTYS 69
           + A  LF  M   G  PS   Y  ++ A  + G+L+EA   I  M  + D   PDV TY+
Sbjct: 375 DDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKM--IEDGHVPDVVTYN 432

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE------MESSF 123
            ++    K  R +    +  EM  LG   +  ++NTII G  +  K ++      ++ +F
Sbjct: 433 TVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAF 492

Query: 124 SAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             +  +   G  PD+ T +++IS   +   ++       +      K  + T N L    
Sbjct: 493 RLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGL 552

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            +AG   + R V+D M      P VVTYN ++    +AG  E+  E    M  RG+ PN 
Sbjct: 553 CKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNV 612

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +LVS   KA  + +   +  Q+++S    +   +  +I  +  AG V+   +LF  
Sbjct: 613 VTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGE 672

Query: 302 MKERHCVPDNITFATM 317
           M      PD++ + T+
Sbjct: 673 MVCAGISPDHVVYGTL 688



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 122/280 (43%), Gaps = 13/280 (4%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALV---------SAYGQSGLLDEAFS 50
           VM G CK  + E+A LLF  M   G  P+   +  ++             Q G LDEAF 
Sbjct: 434 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFR 493

Query: 51  TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
            +  M       PDV TYS LI       R D    +L +M     + + VT NT+I G 
Sbjct: 494 LLKRMTDDGHV-PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGL 552

Query: 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
            KA + +E      AMV SG   PD+ T N+++  +  +G  E+  +  ++    G+  +
Sbjct: 553 CKAGRIKEAREVLDAMVSSGQ-SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPN 611

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           + T   L     +A    +   V   M+     P + TY  +I  F  AG ++   + F 
Sbjct: 612 VVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFG 671

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           +M   G+ P+ + Y +L +   K+G   +   ILR+   S
Sbjct: 672 EMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRES 711



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 142/351 (40%), Gaps = 50/351 (14%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+LG C+  + ++A  +FE M    + P    Y  L+    ++G L++A +    +   
Sbjct: 293 IVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLH- 351

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S   P    Y+ LI      + FD   ++ A+M+  G   S VTYN +ID   K    EE
Sbjct: 352 SGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEE 411

Query: 119 MESSFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
                  M+E G  H PD+ T N+++     S  +E+    +NE   +G   + ++ N +
Sbjct: 412 ACDLIKKMIEDG--HVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTI 469

Query: 178 T---------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
                         + G  D+   ++  M      P VVTY+ +I        ++     
Sbjct: 470 ILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHL 529

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            + M  R  KP  +T  +L+    KAG I +   +L  + +S                GQ
Sbjct: 530 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSS----------------GQ 573

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +                   PD +T+ T++  +   G TE A+ L + M+A
Sbjct: 574 S-------------------PDVVTYNTLVHGHCRAGQTERARELLSDMVA 605



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 118/261 (45%), Gaps = 8/261 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  L E M+    KP+V     L+    ++G + EA   ++ M S S   PDV TY+ 
Sbjct: 524 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS-SGQSPDVVTYNT 582

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    +  + +   ++L++M   G+  + VTY  ++ G  KA +  E    F+ M +S 
Sbjct: 583 LVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQM-KSS 641

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK- 189
           GC P++FT  ++I  + ++G ++   K + E    G+  D      L     ++G   + 
Sbjct: 642 GCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARA 701

Query: 190 ---MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
              +R   + ++   +   V  Y   ++   +AG +E    + + M   G  P      S
Sbjct: 702 LEILREGRESLRSEAWGDEV--YRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCAS 759

Query: 247 LVSAYSKAGLIMKVDSILRQV 267
           LV+   K+G   +  ++L ++
Sbjct: 760 LVAGLCKSGQGGEARAVLEEI 780



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 157/382 (41%), Gaps = 62/382 (16%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ E    + +VM+  G  P    +T ++    ++G +DEA   +++M+S     P
Sbjct: 54  LSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRM-IPP 112

Query: 64  DVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
              T S L    C +      +E+    +  + +  S+  YN ++    KA + ++    
Sbjct: 113 YFATSSFLAHELCLRGS----MERAFQLLEIMPVANSS-AYNIVVVALCKAARVDDALEL 167

Query: 123 FSAMVE-----SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
              M E     + G      +L+S++    +SG I++  + Y E      +  + TLN+L
Sbjct: 168 ARTMSEKRIPLAAG------SLDSVLVGLMDSGRIDEALQVYRENRR---EPCLVTLNVL 218

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE-------------- 223
            + +   G  DK R ++  M      P  V+Y  V++   KAG +E              
Sbjct: 219 LEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSS 278

Query: 224 ------------------------KMEE---YFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
                                   +++E    F+KM  R + P+S +Y  L+   +KAG 
Sbjct: 279 SSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGK 338

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           +    ++ +++ +S V   T  +  +I     A   +   ELF  M  R C P  +T+  
Sbjct: 339 LNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNV 398

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           MI A    GM E A +L  KMI
Sbjct: 399 MIDASCKRGMLEEACDLIKKMI 420



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 134/329 (40%), Gaps = 19/329 (5%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P +     L+  +   G +D+A   +  M    +C PD  +Y  ++    K  R +   
Sbjct: 209 EPCLVTLNVLLEGFCSRGQVDKARELLRAMPD-EECAPDEVSYCTVLDGLCKAGRVEEAV 267

Query: 86  KILAEMSYLGIECSAVT------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           ++  +        S+ +      YN +I G  +  + +E    F  M E     PD ++ 
Sbjct: 268 RLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERN-VSPDSWSY 326

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
             +I     +G +      + +    GV         L      A  +D  R +   M +
Sbjct: 327 GILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNR 386

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R   P+ VTYN++I+   K G +E+  +  KKM   G  P+ +TY +++    K+  + +
Sbjct: 387 RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEE 446

Query: 260 VDSILRQVENSDVILDTPFFNCII------SAYGQAGDVEKMGELFLTMK----ERHCVP 309
              +  ++E      +    N II      S   QA    K+ E F  +K    + H VP
Sbjct: 447 ALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGH-VP 505

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMI 338
           D +T++T+I    ++   + A++L   M+
Sbjct: 506 DVVTYSTLISGLCSIARVDDARHLLEDMV 534



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 147/360 (40%), Gaps = 51/360 (14%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G+ P+  ++T+++  +   G   EA    + M+      PDVY  ++LI S +K  
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVY--NVLIDSLSKRQ 58

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             + ++K++  M   G    + T+ TI+ G  KA K +E E     M  S    P   T 
Sbjct: 59  ETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEM-RSRMIPPYFATS 117

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-Q 198
           + +       G+   ME+ +    +M V A+    NI+  +  +A   D    +   M +
Sbjct: 118 SFLAHELCLRGS---MERAFQLLEIMPV-ANSSAYNIVVVALCKAARVDDALELARTMSE 173

Query: 199 KRFFF-------------------------------PTVVTYNIVIETFGKAGHIEKMEE 227
           KR                                  P +VT N+++E F   G ++K  E
Sbjct: 174 KRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRREPCLVTLNVLLEGFCSRGQVDKARE 233

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF--------- 278
             + M      P+ ++YC+++    KAG   +V+  +R   + ++   +           
Sbjct: 234 LLRAMPDEECAPDEVSYCTVLDGLCKAG---RVEEAVRLFGDRELPSSSSSSSSPPSLRG 290

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +N +I    Q   +++  ++F  M ER+  PD+ ++  +I      G    A+NL  K++
Sbjct: 291 YNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLL 350



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 118/282 (41%), Gaps = 9/282 (3%)

Query: 42  SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV 101
           SG +DEA     + +     +P + T ++L++      + D   ++L  M         V
Sbjct: 193 SGRIDEALQVYRENRR----EPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEV 248

Query: 102 TYNTIIDGYGKAKKFEEM-----ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
           +Y T++DG  KA + EE      +    +   S    P +   N +I     +  I++  
Sbjct: 249 SYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAV 308

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           + + + N   V  D  +  IL     +AG  +  R++   +      P+ V Y  +I   
Sbjct: 309 QMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGL 368

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
             A   +   E F  M  RG  P+ +TY  ++ A  K G++ +   +++++     + D 
Sbjct: 369 CMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDV 428

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             +N ++    ++  VE+   LF  M+   C P+  +  T+I
Sbjct: 429 VTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTII 470



 Score = 37.7 bits (86), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 30/145 (20%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
           +P V  YN++I++  K    E +++  + M  RG  P+S T+ +++    KAG + + + 
Sbjct: 43  YPDV--YNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAEL 100

Query: 263 ILRQVENSDVILDTPFFNC---IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           ++ ++ +  +    P+F     +       G +E+  +L   M   +    NI    + +
Sbjct: 101 VMDEMRSRMI---PPYFATSSFLAHELCLRGSMERAFQLLEIMPVANSSAYNIVVVALCK 157

Query: 320 AYNALGMTEAAQNLENKMIAMKENS 344
           A       E A+ +  K I +   S
Sbjct: 158 AARVDDALELARTMSEKRIPLAAGS 182


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 154/328 (46%), Gaps = 4/328 (1%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K K+  +A  L +   S G+      Y AL+       L+D A    ++MK +  C P
Sbjct: 751  LCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLG-CDP 809

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-FEEMESS 122
            D +TY++++ +  K  R + + K+  EM   G E + VTYNTII G  K+K  +E M+  
Sbjct: 810  DEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLY 869

Query: 123  FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            +  M E  G  P   T   ++      G IE  E  ++E    G K +    NIL   Y 
Sbjct: 870  YKLMSE--GFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYR 927

Query: 183  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             AG  +K+  +   M  +   P + +Y ++I     AG +     YF+++   G++P+ I
Sbjct: 928  LAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLI 987

Query: 243  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            TY  L+    ++G + +  S+   +E S +  +   +N +I   G+ G   + G+++  +
Sbjct: 988  TYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEEL 1047

Query: 303  KERHCVPDNITFATMIQAYNALGMTEAA 330
             +    P+  T+  +I  Y+  G T+ A
Sbjct: 1048 LKNGWKPNVFTYNALIGGYSVSGSTDNA 1075



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 153/331 (46%), Gaps = 3/331 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A  +++VM +DG+ PSV  Y+ L+ A+G+  + +     + +M+     KP+VY+Y+I
Sbjct: 199 REAMEVYKVMATDGIVPSVRTYSVLMLAFGKRDV-ETVVWLLREMED-HGVKPNVYSYTI 256

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            I+   +  RF+   KIL +M   G +   VT   +I     A +  + +  F  M  S 
Sbjct: 257 CIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASD 316

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T  +++   G++G+   + + +N     G   ++     +  +  + G  D+ 
Sbjct: 317 Q-KPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEA 375

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V D M+++   P   +YN +I  F KA  +    E F  M   G  PN  TY   ++ 
Sbjct: 376 SDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINY 435

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K+G  +K       +++  ++ D    N ++ +  ++G +     +F  +K     PD
Sbjct: 436 YGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPD 495

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           NIT+  MI+  +     + A  + ++MI  +
Sbjct: 496 NITYTMMIKCCSKASNADEAMKVFSEMIETR 526



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 149/335 (44%), Gaps = 2/335 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+  + E+A  + + M  +G KP V   T L+     +G + +A      MK+ SD K
Sbjct: 260 VLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKA-SDQK 318

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  L+  C        + +I   M   G   + V Y  ++D   +  + +E    
Sbjct: 319 PDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDV 378

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M + G   P  ++ NS+IS +  +  +    + +N  N+ G   +  T  +    YG
Sbjct: 379 FDQMKQKG-IEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYG 437

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G   K     + M+ +   P VV  N V+ +  K+G +   +  F ++K  G+ P++I
Sbjct: 438 KSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNI 497

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  ++   SKA    +   +  ++  +  + D    N +I    +AG   +  ++F  +
Sbjct: 498 TYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHEL 557

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           KE +  P + T+ T++      G  +   +L  +M
Sbjct: 558 KEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEM 592



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 149/323 (46%), Gaps = 5/323 (1%)

Query: 1   MVMLGKCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           + +L KC     +  + E+   M +DG   +V  YTA+V A  Q G +DEA    + MK 
Sbjct: 325 ITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQ 384

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
               +P  Y+Y+ LI    K  R +   ++   M+  G   +  TY   I+ YGK+ +  
Sbjct: 385 -KGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESL 443

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +    +  M +S G  PD+   N+++ +   SG +   ++ ++E   +GV  D  T  ++
Sbjct: 444 KAIKRYELM-KSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMM 502

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            K   +A   D+   V   M +    P V+  N +I+T  KAG   +  + F ++K   +
Sbjct: 503 IKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNL 562

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            P   TY +L++   + G + +V  +L ++ ++    +   +N ++    + G+V     
Sbjct: 563 DPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALG 622

Query: 298 LFLTMKERHCVPDNITFATMIQA 320
           +   M  + C+PD  ++ T +  
Sbjct: 623 MLYNMTMKGCMPDLSSYNTALHG 645



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 154/340 (45%), Gaps = 3/340 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M+  GK +  E    L   M   G+KP+V  YT  +   GQ+G  +EA+  +  M+    
Sbjct: 224 MLAFGK-RDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMED-EG 281

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           CKPDV T ++LI+      R    + +  +M     +   VTY T++D  G       + 
Sbjct: 282 CKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVI 341

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             ++AM ++ G + ++    +++ A    G +++    +++    G++    + N L   
Sbjct: 342 EIWNAM-KADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISG 400

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + +A   +    + + M      P   TY + I  +GK+G   K  + ++ MK +G+ P+
Sbjct: 401 FLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPD 460

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +   +++ + +K+G +     +  ++++  V  D   +  +I    +A + ++  ++F 
Sbjct: 461 VVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFS 520

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            M E  CVPD +   ++I      G    A  + +++  M
Sbjct: 521 EMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEM 560



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 119/275 (43%), Gaps = 3/275 (1%)

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            D +  S LI+   K  +     +++ +   LG+     +YN +I G       +  E  F
Sbjct: 740  DDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLF 799

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            S M +  GC PD FT N ++ A G S  IE M K   E +  G ++   T N +     +
Sbjct: 800  SEM-KRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVK 858

Query: 184  AGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            + M Y+ M      M +  F PT  TY  +++   K G IE  E+ F +M   G KPN  
Sbjct: 859  SKMLYEAMDLYYKLMSEG-FSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRA 917

Query: 243  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
             Y  L++ Y  AG   KV  + + + +  +  D   +  +I A   AG +      F  +
Sbjct: 918  IYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQL 977

Query: 303  KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             E    PD IT+  +I      G  E A +L N M
Sbjct: 978  TELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDM 1012



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 2/244 (0%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            L K K   +A  L+  ++S+G  P+   Y  L+    + G +++A    ++M     CKP
Sbjct: 856  LVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYG-CKP 914

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            +   Y+IL+         + + ++   M   GI     +Y  +I     A +  +  S F
Sbjct: 915  NRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYF 974

Query: 124  SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              + E G   PD+ T N +I   G SG +E+    +N+    G+  ++ T N L    G+
Sbjct: 975  RQLTELG-LEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGK 1033

Query: 184  AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
             G   +   + + + K  + P V TYN +I  +  +G  +     + +M   G  PNS T
Sbjct: 1034 EGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSST 1093

Query: 244  YCSL 247
            Y  L
Sbjct: 1094 YMQL 1097



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 1/200 (0%)

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N M+      G +  M + ++      VKA++ T   + +S G  G        +  M++
Sbjct: 116 NYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKE 175

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
                   TYN +I    K+G+  +  E +K M   G+ P+  TY  L+ A+ K   +  
Sbjct: 176 AGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRD-VET 234

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           V  +LR++E+  V  +   +   I   GQAG  E+  ++   M++  C PD +T   +IQ
Sbjct: 235 VVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQ 294

Query: 320 AYNALGMTEAAQNLENKMIA 339
                G    A+++  KM A
Sbjct: 295 ILCDAGRVSDAKDVFWKMKA 314



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 1    MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
            ++ LGK  +  +A  ++E +L +G KP+V  Y AL+  Y  SG  D AF++   M  V  
Sbjct: 1028 ILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQM-IVGG 1086

Query: 61   CKPDVYTY 68
            C P+  TY
Sbjct: 1087 CPPNSSTY 1094


>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
           [Vitis vinifera]
          Length = 875

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 1/286 (0%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           +K  +  K D +TY+ ++    +  +F  I K+LAEM   G + + VTYN +I  YG+A 
Sbjct: 369 LKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRAN 428

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
              E  S F  M E+G C PD  T  ++I  +  +G ++     Y +     +  D  T 
Sbjct: 429 YLNEAVSVFDRMQEAG-CQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTY 487

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           +++    G+AG       +   M  +   P +VTYNI+I    KA +     E ++ M++
Sbjct: 488 SVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQN 547

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G +P+ +TY  ++      G + + ++I  +++  + + D P +  ++  +G+ G+VEK
Sbjct: 548 AGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEK 607

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             E +  M      P+  T  +++ A+  +     A NL   M+ +
Sbjct: 608 SWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRL 653



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 126/249 (50%), Gaps = 2/249 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+ +Q    + L   M+ DG +P+V  Y  L+ +YG++  L+EA S  + M+  + C+
Sbjct: 388 ILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQE-AGCQ 446

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI    K    D+   +  +M    +     TY+ II+  GKA         
Sbjct: 447 PDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKL 506

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV+  GC P++ T N MI+    + N     + Y +    G + D  T +I+ +  G
Sbjct: 507 FCEMVDQ-GCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLG 565

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  ++  ++   M+++ + P    Y ++++ +GK G++EK  E+++ M + G+ PN  
Sbjct: 566 HCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVP 625

Query: 243 TYCSLVSAY 251
           T  SL+SA+
Sbjct: 626 TCNSLLSAF 634



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 129/311 (41%), Gaps = 17/311 (5%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E+A  +F  M      P   VY  LV  +G+ G +++++     M +   
Sbjct: 561 MEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGL 620

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P+V T + L+ +  + HR      +L  M  LG++ S  TY  ++    +A+   +M 
Sbjct: 621 C-PNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTEARSSFDMG 679

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKADIQTLNILTK 179
                M  +G  HP    L SM +A  +  N+ + + K+ +  +    ++    ++ +  
Sbjct: 680 FCGELMAVTG--HPAHMFLLSMPAAGPDGQNVRDHVSKFLDLMHSEDRESKRGLVDAVVD 737

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVT-----YNIVIETFGKAGHI-----EKMEEYF 229
              ++G+ ++  SV +   ++  +P  V      Y ++   F   G         +  + 
Sbjct: 738 FLHKSGLKEEAGSVWEVAAQKNVYPDAVREKSSCYWLINLHFMSDGTAVTALSRTLAWFH 797

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           ++M   G  P+ I    +V+ + +   +     + + V+    I   PFF    ++    
Sbjct: 798 REMLVSGTVPSRI---DIVTGWGRRSRVTGASLVRQAVQELLHIFSFPFFTENGNSGCFV 854

Query: 290 GDVEKMGELFL 300
           G  E +G   L
Sbjct: 855 GRGEPLGRWLL 865


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 154/335 (45%), Gaps = 4/335 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK      A  L + M   G KP+V  Y  ++ +  +  L+ EA    ++M       
Sbjct: 54  GLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVK-EGIP 112

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV+TYS ++       R +    +  +M    +  + VT+  +IDG  K +   E    
Sbjct: 113 PDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLV 172

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M E G   PD++T N+++  Y +   +++ +K +N  +  G   ++++ NIL   + 
Sbjct: 173 FETMTEKG-LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHC 231

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G  D+ + ++  M  +   P + TY+ ++  F + G  ++ +E  K+M   G+ PN I
Sbjct: 232 KSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLI 291

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  ++    K G + +   +L+ ++ S +  +   +  +I      G +E   ELF  +
Sbjct: 292 TYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNL 351

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   P  +T+  MI      G++  A  L  +M
Sbjct: 352 FVKGIQPTVVTYTVMISGLLKGGLSNEACELFREM 386



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 150/328 (45%), Gaps = 2/328 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A   F  M+ +G+ P V  Y++++  +   G ++EA S    M    +  P+  T++IL
Sbjct: 98  EAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVE-RNVIPNKVTFTIL 156

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K         +   M+  G+E    TYN ++DGY    + +E +  F+ M +  G
Sbjct: 157 IDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIM-DRKG 215

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P++ + N +I+ +  SG I++ +    E +   +  DI T + L + + + G   + +
Sbjct: 216 CAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQ 275

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++  M      P ++TY+IV++   K GH+++  E  K M+   ++PN   Y  L+   
Sbjct: 276 ELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGM 335

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G +     +   +    +      +  +IS   + G   +  ELF  M    C+P++
Sbjct: 336 CTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNS 395

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
            T+  +IQ +   G T  A  L  +M+ 
Sbjct: 396 CTYNVIIQGFLRNGDTPNAVRLIEEMVG 423



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 153/349 (43%), Gaps = 37/349 (10%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   GL+P++  +  L+S       + +A    ++M  +   +PDV TYS +I    K  
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGH-EPDVITYSTIINGLCKMG 59

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
              +  ++L +M   G + + V YNTIID   K +   E    FS MV+  G  PD+FT 
Sbjct: 60  NTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKE-GIPPDVFTY 118

Query: 140 NSMISAYGNSGNIEKM---------------------------------EKW--YNEFNL 164
           +S++  + N G + +                                  E W  +     
Sbjct: 119 SSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTE 178

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G++ D+ T N L   Y      D+ + + + M ++   P V +YNI+I    K+G I++
Sbjct: 179 KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDE 238

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
            +    +M H+ + P+  TY +L+  + + G   +   +L+++ +  ++ +   ++ ++ 
Sbjct: 239 AKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLD 298

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
              + G +++  EL   M+E    P+   +  +I+     G  EAA+ L
Sbjct: 299 GLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAAREL 347



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 140/303 (46%), Gaps = 2/303 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+ LF+ M+   + P+   +T L+    +  ++ EA+     M      +PDVYTY+ L
Sbjct: 133 EATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTE-KGLEPDVYTYNAL 191

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +       + D  +K+   M   G   +  +YN +I+G+ K+ + +E +   + M     
Sbjct: 192 VDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKS- 250

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PDIFT ++++  +   G  ++ ++   E    G+  ++ T +I+     + G  D+  
Sbjct: 251 LTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAF 310

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++  MQ+    P +  Y I+IE     G +E   E F  +  +G++P  +TY  ++S  
Sbjct: 311 ELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGL 370

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K GL  +   + R++  +  + ++  +N II  + + GD      L   M  +    D+
Sbjct: 371 LKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADS 430

Query: 312 ITF 314
            TF
Sbjct: 431 STF 433



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 111/236 (47%), Gaps = 2/236 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q ++A  LF +M   G  P+V  Y  L++ + +SG +DEA   + +M   S   PD++TY
Sbjct: 200 QMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKS-LTPDIFTY 258

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S L++   +  R    +++L EM   G+  + +TY+ ++DG  K    +E      AM E
Sbjct: 259 STLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQE 318

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           S    P+IF    +I      G +E   + ++   + G++  + T  ++     + G+ +
Sbjct: 319 SK-IEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSN 377

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           +   +   M      P   TYN++I+ F + G         ++M  +G   +S T+
Sbjct: 378 EACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTF 433



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 1/247 (0%)

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M  LG++ + VT+NT++ G     K  +    F  MV+ G   PD+ T +++I+     G
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGH-EPDVITYSTIINGLCKMG 59

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           N     +   +    G K ++   N +  S  +  +  +       M K    P V TY+
Sbjct: 60  NTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYS 119

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            ++  F   G + +    FK+M  R + PN +T+  L+    K  +I +   +   +   
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK 179

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +  D   +N ++  Y     +++  +LF  M  + C P+  ++  +I  +   G  + A
Sbjct: 180 GLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEA 239

Query: 331 QNLENKM 337
           + L  +M
Sbjct: 240 KGLLAEM 246



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 63/135 (46%)

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT+VT+N ++        I    + F +M   G +P+ ITY ++++   K G       +
Sbjct: 8   PTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQL 67

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L+++E      +   +N II +  +   V +  + F  M +    PD  T+++++  +  
Sbjct: 68  LKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCN 127

Query: 324 LGMTEAAQNLENKMI 338
           LG    A +L  +M+
Sbjct: 128 LGRVNEATSLFKQMV 142


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 147/336 (43%), Gaps = 2/336 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK K   +A  +F  +     +P+   Y +++    Q G  ++     N+M S   C 
Sbjct: 162 ILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCF 221

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TYS LI +  K +R D   ++  EM   G++ +A  Y T++  Y K  K EE    
Sbjct: 222 PDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGL 281

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M  +  C   +FT   +I   G SG +E     Y      G K D+  +N L    G
Sbjct: 282 VKEM-RARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILG 340

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKPNS 241
           R+        + D M+     P VVTYN +I++ F     + +   +F++MK  G+ P+S
Sbjct: 341 RSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSS 400

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY  L+  Y K   + K   +L +++          +  +I+  G A   +   ELF  
Sbjct: 401 FTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQE 460

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +KE         +A MI+ +   G    A NL N+M
Sbjct: 461 LKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEM 496



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 152/368 (41%), Gaps = 34/368 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------ 57
             K  + + A  LF+ M  +GL+P+  +YT L+  Y + G ++EA   + +M++      
Sbjct: 234 FAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLT 293

Query: 58  ----------------VSD------------CKPDVYTYSILIKSCTKFHRFDLIEKILA 89
                           V D            CKPDV   + LI    + +      K+  
Sbjct: 294 VFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFD 353

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           EM  L    + VTYNTII    +AK      SS+   ++  G  P  FT + +I  Y  +
Sbjct: 354 EMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKT 413

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
             +EK      E +  G          L  + G A  YD    +   +++     +   Y
Sbjct: 414 NRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVY 473

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
            ++I+ FGK G + +    F +MK  G  P+   Y +L++   +A  + +  S+ R +E 
Sbjct: 474 AVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEE 533

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
           +    D    N I++   + G  +   E+F  MK     PD ++F T++   +  G+ E 
Sbjct: 534 NGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEE 593

Query: 330 AQNLENKM 337
           A  L  +M
Sbjct: 594 AAKLMQEM 601



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 145/325 (44%), Gaps = 40/325 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + E A + ++ ML DG KP V +   L++  G+S  L +A    ++MK + +C P
Sbjct: 304 LGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLL-NCAP 362

Query: 64  DV------------------------------------YTYSILIKSCTKFHRFDLIEKI 87
           +V                                    +TYSILI    K +R +    +
Sbjct: 363 NVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLL 422

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH-PDIFTLNSMISAY 146
           L EM   G       Y ++I+  G AK+++     F  + E+ GC    ++ +  MI  +
Sbjct: 423 LEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAV--MIKHF 480

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           G  G + +    +NE   +G   D+   N L     RA   D+  S+   M++    P +
Sbjct: 481 GKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDI 540

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            ++NI++    + G  +   E F KMK+  +KP+ +++ +++   S+AGL  +   ++++
Sbjct: 541 NSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQE 600

Query: 267 VENSDVILDTPFFNCIISAYGQAGD 291
           + +     D   ++ I+ A G+  D
Sbjct: 601 MSSKGFQYDLITYSSILEAVGKVDD 625



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 129/307 (42%), Gaps = 2/307 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y AL+    +  +  E + TI DM   S C       S +++   K    +    +  ++
Sbjct: 121 YMALIRCLDEHRMFGEVWKTIQDMVKGS-CAMAPAELSEIVRILGKAKMVNRALSVFYQV 179

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
                  +A TYN+II    +    E++   ++ M     C PD  T +++ISA+     
Sbjct: 180 KGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNR 239

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            +   + ++E    G++   +    L   Y + G  ++   ++  M+ R    TV TY  
Sbjct: 240 DDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTE 299

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I   GK+G +E     +K M   G KP+ +   +L++   ++  +     +  +++  +
Sbjct: 300 LIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLN 359

Query: 272 VILDTPFFNCIISAYGQA-GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              +   +N II +  +A   + +    F  MK+   VP + T++ +I  Y      E A
Sbjct: 360 CAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKA 419

Query: 331 QNLENKM 337
             L  +M
Sbjct: 420 LLLLEEM 426



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 34/168 (20%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           L+ + +  G+A M ++  SV   ++ R   PT  TYN +I    + GH EK+ E + +M 
Sbjct: 156 LSEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEM- 214

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
                      CS V  +                       DT  ++ +ISA+ +    +
Sbjct: 215 -----------CSEVHCFP----------------------DTVTYSALISAFAKLNRDD 241

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
               LF  MKE    P    + T++  Y  +G  E A  L  +M A +
Sbjct: 242 SAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARR 289


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 157/335 (46%), Gaps = 4/335 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C++     A  L + M+  G KP +  Y A++ +  ++  +++AF    +++     +
Sbjct: 164 GFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER-KGIR 222

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V TY+ L+       R+    ++L++M    I  + +TY+ ++D + K  K  E +  
Sbjct: 223 PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKEL 282

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV      PDI T +S+I+       I++  + ++     G  AD+ + N L   + 
Sbjct: 283 FEEMVRMS-IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC 341

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A   +    +   M +R      VTYN +I+ F +AG ++K +E+F +M   G+ P+  
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 401

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+      G + K   I   ++  ++ LD   +  +I    + G VE+   LF ++
Sbjct: 402 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 461

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   PD +T+ TM+      G+    + L  KM
Sbjct: 462 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 153/327 (46%), Gaps = 2/327 (0%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C Q   A  +   ML  G +P      +LV+ + +   + +A S ++ M  +   KPD+ 
Sbjct: 133 CFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG-YKPDIV 191

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y+ +I S  K  R +       E+   GI  + VTY  +++G   + ++ +     S M
Sbjct: 192 AYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM 251

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           ++     P++ T ++++ A+  +G + + ++ + E   M +  DI T + L         
Sbjct: 252 IKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D+   + D M  +     VV+YN +I  F KA  +E   + F++M  RG+  N++TY +
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+  + +AG + K      Q++   +  D   +N ++      G++EK   +F  M++R 
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNL 333
              D +T+ T+I+     G  E A +L
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSL 457



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 154/316 (48%), Gaps = 10/316 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDC 61
           L K K+   A   F+ +   G++P+V  YTALV+    S    +A   ++DM  K ++  
Sbjct: 200 LCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKIT-- 257

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            P+V TYS L+ +  K  +    +++  EM  + I+   VTY+++I+G     + +E   
Sbjct: 258 -PNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 316

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  MV S GC  D+ + N++I+ +  +  +E   K + E +  G+ ++  T N L + +
Sbjct: 317 MFDLMV-SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375

Query: 182 GRAGMYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +AG  DK +    F Q  FF   P + TYNI++      G +EK    F+ M+ R M  
Sbjct: 376 FQAGDVDKAQEF--FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +TY +++    K G + +  S+   +    +  D   +  ++S     G + ++  L+
Sbjct: 434 DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALY 493

Query: 300 LTMKERHCVPDNITFA 315
             MK+   + ++ T +
Sbjct: 494 TKMKQEGLMKNDCTLS 509



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/305 (19%), Positives = 132/305 (43%), Gaps = 8/305 (2%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           L++A    +DM   S   P +  ++ L+ +  K  ++D++  +  +M  LGI     T+N
Sbjct: 66  LNDAIDLFSDMVK-SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I+ +    +     S    M++ G   PD  T+ S+++ +     +       ++   
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGY-EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 183

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
           +G K DI   N +  S  +    +        ++++   P VVTY  ++     +     
Sbjct: 184 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
                  M  + + PN ITY +L+ A+ K G +++   +  ++    +  D   ++ +I+
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLIN 303

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
                  +++  ++F  M  + C+ D +++ T+I  +        A+ +E+ M   +E S
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC------KAKRVEDGMKLFREMS 357

Query: 345 GKKLI 349
            + L+
Sbjct: 358 QRGLV 362


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 161/339 (47%), Gaps = 7/339 (2%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+ +  +A     +M S G+KP++  Y  LV  Y   G ++ A   I++MKS    +PD
Sbjct: 237 CKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKS-KGFQPD 295

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY+ ++       R     ++L EM  +G+   +V+YN +I G       E   +   
Sbjct: 296 LQTYNPILSWMCNEGR---ASEVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRD 352

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            MV+ G   P  +T N++I        IE  E    E    G+  D  T NI+   Y + 
Sbjct: 353 EMVKQGMV-PTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQH 411

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   K  ++ D M      PT  TY  +I    +     + +E F+K+  +GMKP+ +  
Sbjct: 412 GDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMM 471

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+  +   G + +  S+L++++  ++  D   +NC++      G  E+  EL   MK 
Sbjct: 472 NTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKR 531

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           R   PD+I++ T+I  Y+  G T+ A  + ++M+++  N
Sbjct: 532 RGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFN 570



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 147/362 (40%), Gaps = 40/362 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A   F +M   G  P  +    ++S   +   ++ A+    DM  + + K +VYT++I
Sbjct: 173 DEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADMYRM-EIKSNVYTFNI 231

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    K  +    +  L  M   GI+ + VTYNT++ GY    + E      S M +S 
Sbjct: 232 MINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEM-KSK 290

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD+ T N ++S   N G   ++ +   E   +G+  D  + NIL +     G  +  
Sbjct: 291 GFQPDLQTYNPILSWMCNEGRASEVLR---EMKGIGLVPDSVSYNILIRGCSNNGDLETA 347

Query: 191 RSVMDFMQKRFFFPTV-----------------------------------VTYNIVIET 215
            +  D M K+   PT                                    VTYNIVI  
Sbjct: 348 FAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVING 407

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           + + G  +K      +M   G+KP   TY SL+    +     + D +  +V    +  D
Sbjct: 408 YCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPD 467

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
               N ++  +   G++++   L   M   +  PD++T+  +++     G  E A+ L  
Sbjct: 468 LVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMG 527

Query: 336 KM 337
           +M
Sbjct: 528 EM 529



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 6/246 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A +L   +   G+      Y  +++ Y Q G   +AF+  ++M +    KP  +TY+ 
Sbjct: 380 EAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMT-DGIKPTQFTYTS 438

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    + ++    +++  ++   G++   V  NT++DG+        M+ +FS + E  
Sbjct: 439 LIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGN---MDRAFSLLKEMD 495

Query: 131 --GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                PD  T N ++      G  E+  +   E    G+K D  + N L   Y + G   
Sbjct: 496 RMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTK 555

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
               V D M    F PT++TYN +++   K    E  EE  ++MK  G+ PN  ++CS++
Sbjct: 556 HAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVI 615

Query: 249 SAYSKA 254
            A SK+
Sbjct: 616 EAMSKS 621



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 105/235 (44%), Gaps = 4/235 (1%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S + ++ ++  Y + +  +E    F  M E G   P   T N ++S       IE    +
Sbjct: 155 STILFDFMVRFYCQLRMVDEAIECFYLMKEKG-FDPKTETCNHILSLLSRLNRIENAWVF 213

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
           Y +   M +K+++ T NI+     + G   K +  +  M+     PT+VTYN +++ +  
Sbjct: 214 YADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSL 273

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
            G IE       +MK +G +P+  TY  ++S     G   +   +LR+++   ++ D+  
Sbjct: 274 RGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEG---RASEVLREMKGIGLVPDSVS 330

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +N +I      GD+E        M ++  VP   T+ T+I         EAA+ L
Sbjct: 331 YNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEIL 385



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 84/167 (50%), Gaps = 6/167 (3%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L +  +  +A  LFE ++  G+KP + +   L+  +  +G +D AFS + +M  + +  
Sbjct: 442 VLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRM-NID 500

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY+ L++      +F+   +++ EM   GI+   ++YNT+I GY K     + + +
Sbjct: 501 PDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKG---DTKHA 557

Query: 123 FSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 167
           F    E  S G +P + T N+++     + + E  E+   E    G+
Sbjct: 558 FIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGI 604


>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
          Length = 793

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 1/286 (0%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           +K  +  K D +TY+ ++    +  +F  I K+LAEM   G + + VTYN +I  YG+A 
Sbjct: 378 LKRQTGFKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRAN 437

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
              E  S F  M E+G C PD  T  ++I  +  +G ++     Y +     +  D  T 
Sbjct: 438 YLNEAVSVFDRMQEAG-CQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTY 496

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           +++    G+AG       +   M  +   P +VTYNI+I    KA +     E ++ M++
Sbjct: 497 SVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQN 556

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G +P+ +TY  ++      G + + ++I  +++  + + D P +  ++  +G+ G+VEK
Sbjct: 557 AGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEK 616

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             E +  M      P+  T  +++ A+  +     A NL   M+ +
Sbjct: 617 SWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRL 662



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 126/249 (50%), Gaps = 2/249 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+ +Q    + L   M+ DG +P+V  Y  L+ +YG++  L+EA S  + M+  + C+
Sbjct: 397 ILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQE-AGCQ 455

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI    K    D+   +  +M    +     TY+ II+  GKA         
Sbjct: 456 PDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKL 515

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV+  GC P++ T N MI+    + N     + Y +    G + D  T +I+ +  G
Sbjct: 516 FCEMVDQ-GCVPNLVTYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLG 574

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  ++  ++   M+++ + P    Y ++++ +GK G++EK  E+++ M + G+ PN  
Sbjct: 575 HCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVP 634

Query: 243 TYCSLVSAY 251
           T  SL+SA+
Sbjct: 635 TCNSLLSAF 643



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E+A  +F  M      P   VY  LV  +G+ G +++++     M +   
Sbjct: 570 MEVLGHCGHLEEAEAIFTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGL 629

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C P+V T + L+ +  + HR      +L  M  LG++ S  TY  ++    +A+   +M 
Sbjct: 630 C-PNVPTCNSLLSAFLRVHRLSDAYNLLQSMLRLGLQPSLQTYTLLLSCCTEARSSFDMG 688

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153
                M  +G  HP    L SM +A  +  N+ 
Sbjct: 689 FCGELMAVTG--HPAHMFLLSMPAAGPDGQNVR 719


>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
 gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
          Length = 564

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 124/260 (47%), Gaps = 1/260 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           K DV+TY+ ++    +   FD++  +L EM   G E + VTYN +I  YG+A   +    
Sbjct: 64  KHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLK 123

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F+ M +  GC PD  T  ++I     +G  +     Y +    G + D  T +I+    
Sbjct: 124 LFNVM-QMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSIIIHCL 182

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+AG  +    +   M  R + P++VTYNI+I+   KAG  +   + +  ++  G  P+ 
Sbjct: 183 GKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDR 242

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY  ++      G I   + +  ++E +  + D P F  ++  +G+ G+ EK  + F  
Sbjct: 243 VTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNR 302

Query: 302 MKERHCVPDNITFATMIQAY 321
           M +    P+     +++ AY
Sbjct: 303 MLDSGLQPNVPACNSLLSAY 322



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 7/240 (2%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           TY TI+   G+AK F+ + +    M+  G C P++ T N +I  YG + +++   K +N 
Sbjct: 69  TYTTILGILGRAKSFDVLNNLLDEMIREG-CEPNVVTYNRLIHCYGRANDLDSSLKLFNV 127

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
             ++G + D  T   L     +AG +D    +   MQ   F P   TY+I+I   GKAG 
Sbjct: 128 MQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSIIIHCLGKAGK 187

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDVILDTPF 278
           +    + F +M  RG  P+ +TY  ++  ++KAG   + +K+ S L++V  +    D   
Sbjct: 188 LNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAP---DRVT 244

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  I+   G  G +E   ++F  M+    V DN  F  M+  +   G  E A    N+M+
Sbjct: 245 YGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRML 304



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 145/317 (45%), Gaps = 6/317 (1%)

Query: 8   KQPEQASLLFEVML----SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           KQ ++A + +   +      G K  V  YT ++   G++   D   + +++M     C+P
Sbjct: 42  KQQKEAGVAYNFFIWARKQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIR-EGCEP 100

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TY+ LI    + +  D   K+   M  +G E   VTY T+ID   KA  F +     
Sbjct: 101 NVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAG-FHDAAMDL 159

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              ++  G  PD FT + +I   G +G +    K + E    G    + T NI+   + +
Sbjct: 160 YRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAK 219

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG +D    +   +Q+  + P  VTY I++E  G  GHIE  E+ F++M+  G   ++  
Sbjct: 220 AGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPI 279

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           +  +V  + K G   K      ++ +S +  + P  N ++SAY ++   +  G +   M 
Sbjct: 280 FGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMA 339

Query: 304 ERHCVPDNITFATMIQA 320
           +    P   T+ +++ +
Sbjct: 340 KWGLYPTLQTYTSLLSS 356



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 121/262 (46%), Gaps = 2/262 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+ K  +  + L + M+ +G +P+V  Y  L+  YG++  LD +    N M+ V  C+
Sbjct: 76  ILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVG-CE 134

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TY  LI    K    D    +  +M + G      TY+ II   GKA K       
Sbjct: 135 PDRVTYCTLIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKL 194

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M + G   P + T N +I  +  +G  +   K Y++   +G   D  T  I+ +  G
Sbjct: 195 FCEMTDRGYA-PSLVTYNIIIDLHAKAGKFDMALKLYSDLQEVGYAPDRVTYGIIMEVLG 253

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  +    V + M++  +      + ++++ +GK G+ EK  ++F +M   G++PN  
Sbjct: 254 NCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRMLDSGLQPNVP 313

Query: 243 TYCSLVSAYSKAGLIMKVDSIL 264
              SL+SAY ++        +L
Sbjct: 314 ACNSLLSAYLRSSFYDAAGGVL 335



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 113/260 (43%), Gaps = 2/260 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    + +  LF VM   G +P    Y  L+    ++G  D A      M+  +  +PD
Sbjct: 113 GRANDLDSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQMQH-AGFRPD 171

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            +TYSI+I    K  + +   K+  EM+  G   S VTYN IID + KA KF+     +S
Sbjct: 172 TFTYSIIIHCLGKAGKLNAAYKLFCEMTDRGYAPSLVTYNIIIDLHAKAGKFDMALKLYS 231

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            + E G   PD  T   ++   GN G+IE  E+ + E    G  AD     ++   +G+ 
Sbjct: 232 DLQEVGYA-PDRVTYGIIMEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKT 290

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  +K     + M      P V   N ++  + ++   +        M   G+ P   TY
Sbjct: 291 GNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTY 350

Query: 245 CSLVSAYSKAGLIMKVDSIL 264
            SL+S+ +      + D++ 
Sbjct: 351 TSLLSSCAACRAAWEYDALF 370



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M GK    E+A+  F  ML  GL+P+V    +L+SAY +S   D A   +  M       
Sbjct: 286 MWGKTGNAEKAAQWFNRMLDSGLQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWG-LY 344

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG-----IECSAVTYNTIIDG---YGKAK 114
           P + TY+ L+ SC         + +   M   G       CS +    ++ G   +  A 
Sbjct: 345 PTLQTYTSLLSSCAACRAAWEYDALFGLMGGTGHPAHPFVCSLLASGEMVVGIRCFFDAM 404

Query: 115 KFEEMES 121
           +FEE+ES
Sbjct: 405 QFEELES 411



 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 52/105 (49%)

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           K  G K +  TY +++    +A     ++++L ++       +   +N +I  YG+A D+
Sbjct: 59  KQAGFKHDVHTYTTILGILGRAKSFDVLNNLLDEMIREGCEPNVVTYNRLIHCYGRANDL 118

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +   +LF  M+   C PD +T+ T+I      G  +AA +L  +M
Sbjct: 119 DSSLKLFNVMQMVGCEPDRVTYCTLIDLQAKAGFHDAAMDLYRQM 163



 Score = 45.1 bits (105), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 2/140 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M +LG C   E A  +FE M   G      ++  +V  +G++G  ++A    N M   S 
Sbjct: 249 MEVLGNCGHIEDAEQVFEEMERAGWVADNPIFGLMVDMWGKTGNAEKAAQWFNRMLD-SG 307

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            +P+V   + L+ +  +   +D    +L  M+  G+  +  TY +++      +   E +
Sbjct: 308 LQPNVPACNSLLSAYLRSSFYDAAGGVLGGMAKWGLYPTLQTYTSLLSSCAACRAAWEYD 367

Query: 121 SSFSAMVESG-GCHPDIFTL 139
           + F  M  +G   HP + +L
Sbjct: 368 ALFGLMGGTGHPAHPFVCSL 387


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 162/367 (44%), Gaps = 37/367 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L  C    +A+ LF+ M+S GLKP++ +YT +V    + G  +EA   +  MK      P
Sbjct: 452 LCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKD-QGLSP 510

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV+ Y+ +I    K  + +  +  L EM   G++ +  TY   I GY +A + +  E SF
Sbjct: 511 DVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSF 570

Query: 124 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
             M++SG                                  G  PD+ T + +I     +
Sbjct: 571 IEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKN 630

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G +++    ++E    G+  D+ T   L  +  + G       + D M K+   P +VTY
Sbjct: 631 GKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTY 690

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N +I    K G I K  E F  +  +G+  NS+TY ++++ Y K+  + +   +   ++ 
Sbjct: 691 NALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKL 750

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTE 328
             V  D+  +  +I    +AG+ EK   LFL M E   +     F  +I  +  LG + E
Sbjct: 751 VGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG-IASTPAFNALIDGFFKLGKLIE 809

Query: 329 AAQNLEN 335
           A Q +E+
Sbjct: 810 AYQLVED 816



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 162/339 (47%), Gaps = 10/339 (2%)

Query: 5   GKCKQ---PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           G C+Q    E  S+L E M + GLKP    YTAL++ + +   +  AF    +M +    
Sbjct: 311 GFCRQKRSTEGKSMLDE-MYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFA-RKI 368

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           K + +TY  LI    K    +  E + +EM+ +GI+    TYN +I+GY    K + ME 
Sbjct: 369 KLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGY---YKVQNMEK 425

Query: 122 SFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           ++  ++E        + +   ++++   + G++ +  + + E    G+K +I     + K
Sbjct: 426 AYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVK 485

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              + G +++   ++  M+ +   P V  YN VI  F KAG +E+ + Y  +M  +G+KP
Sbjct: 486 GLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKP 545

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N  TY + +  Y +AG +   +    ++ +S +  +      +I  Y + G+  K    F
Sbjct: 546 NVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKF 605

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M ++  +PD  T + +I   +  G  + A  + ++++
Sbjct: 606 RCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELL 644



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 149/328 (45%), Gaps = 11/328 (3%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  E   +LF+ M   G  P++  Y+ +++   ++G +DEA      M +     PD Y 
Sbjct: 247 KVEEGKHVLFD-MEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMAN-KGLLPDNYI 304

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSF 123
           Y+ LI    +  R    + +L EM  +G++   V Y  +I+G+ K       F+  E  F
Sbjct: 305 YATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMF 364

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           +  ++      + FT  ++I      G++EK E  ++E  +MG+K DIQT N L + Y +
Sbjct: 365 ARKIKL-----NTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYK 419

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               +K   ++  ++K            ++      G + +  E F++M   G+KPN + 
Sbjct: 420 VQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVI 479

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y ++V    K G   +   IL  +++  +  D   +N +I  + +AG +E+     + M 
Sbjct: 480 YTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMI 539

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQ 331
            +   P+  T+   I  Y   G  +AA+
Sbjct: 540 AKGLKPNVYTYGAFIHGYCRAGEMQAAE 567



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 157/349 (44%), Gaps = 11/349 (3%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVS 59
           G CK     +A   F  ML  G+ P V  ++ L+    ++G L EA   FS + D   V 
Sbjct: 591 GYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLV- 649

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PDV+TY+ LI +  K        ++  +M   GI  + VTYN +I+G  K  +  + 
Sbjct: 650 ---PDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKA 706

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  + E G     + T +++I+ Y  S N+ +  + ++   L+GV  D      L  
Sbjct: 707 RELFDGIPEKGLARNSV-TYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALID 765

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              +AG  +K  S+   M +     T   +N +I+ F K G + +  +  + M    + P
Sbjct: 766 GCCKAGNTEKALSLFLGMVEEGIASTP-AFNALIDGFFKLGKLIEAYQLVEDMVDNHITP 824

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N +TY  L+  +   G I + + +  +++  +V+ +   +  ++  Y + G   +M  LF
Sbjct: 825 NHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLF 884

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 348
             M  R   PD++ ++ M+ A+   G    A  L + M++   N  K L
Sbjct: 885 DEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNL 933



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 128/300 (42%), Gaps = 5/300 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E  +A  LF+ +   GL  +   Y+ +++ Y +S  L EAF   + MK V    
Sbjct: 696 GLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVG-VP 754

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD + Y  LI  C K    +    +   M   GI  S   +N +IDG+ K  K  E    
Sbjct: 755 PDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIA-STPAFNALIDGFFKLGKLIEAYQL 813

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              MV++    P+  T   +I  +   GNI++ E+ + E     V  ++ T   L   Y 
Sbjct: 814 VEDMVDNH-ITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYN 872

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G   +M S+ D M  R   P  + ++++++   K G+  K  +    M   G+     
Sbjct: 873 RIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKN 932

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y  L+ A  K   + +V  +L +VE     L       ++  + +AG  ++   +  +M
Sbjct: 933 LYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESM 992



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 133/309 (43%), Gaps = 5/309 (1%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           +  L+  Y + G L+EA S     K+ ++    +   + L K   K +R +L  K+   M
Sbjct: 166 FEILIDIYRKKGFLNEAVSVFLGAKT-NEFIVGLACCNSLSKDLLKGNRVELFWKVYKGM 224

Query: 92  SYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
             LG I     TY  +I+ Y +  K EE +     M E  GC P++ T + +I+    +G
Sbjct: 225 --LGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDM-EEKGCIPNLVTYSVVIAGLCRAG 281

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           ++++  +        G+  D      L   + R     + +S++D M      P  V Y 
Sbjct: 282 DVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYT 341

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I  F K   I    +  ++M  R +K N+ TY +L+    K G + K + +  ++   
Sbjct: 342 ALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMM 401

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            +  D   +NC+I  Y +  ++EK  EL + +K+ +   +      ++      G    A
Sbjct: 402 GIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRA 461

Query: 331 QNLENKMIA 339
             L  +MI+
Sbjct: 462 NELFQEMIS 470



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 86/177 (48%)

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
           L  +  D+ T   L  +Y R G  ++ + V+  M+++   P +VTY++VI    +AG ++
Sbjct: 225 LGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVD 284

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
           +  E  + M ++G+ P++  Y +L+  + +     +  S+L ++    +  D   +  +I
Sbjct: 285 EALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALI 344

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           + + +  D+    ++   M  R    +  T+  +I     +G  E A++L ++M  M
Sbjct: 345 NGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMM 401



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS--VSDCKPDVYTYSILIK 73
           LF+ M++ G+KP    ++ +V A+ + G   +A   ++DM S  V+ CK     Y+ILI 
Sbjct: 883 LFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKN---LYTILID 939

Query: 74  SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           +  K +    + K+L E+   G + S  T  T++  + +A + +E      +MV S
Sbjct: 940 ALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESMVRS 995


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 164/351 (46%), Gaps = 28/351 (7%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    E+A L F+ M   GL  +   +T L++   + GL  + F     MK ++   
Sbjct: 206 GCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMK-INGLF 264

Query: 63  PDVYTYSILI-------KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
           P++YTY+ L+       K C  F  FD       EM   G+E + VTYNT+I G  + ++
Sbjct: 265 PNLYTYNCLMNEYCGEGKICRAFDLFD-------EMRERGVEANVVTYNTLIGGMCREER 317

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
             E E     M +     P++ T N++I  + + GN++K     ++    G+   + T N
Sbjct: 318 VWEAEKLVDQM-KKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYN 376

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
           IL + Y +AG +  +  +   M+ R   P+ VT  ++I+ + +   +EK  + +  M+  
Sbjct: 377 ILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKF 436

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILR-----QVENSDVILDTPFFNCIISAYGQAG 290
           G+ P+   Y  L+      G + +   + R      VE SDVI     +N +I  Y +  
Sbjct: 437 GLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVI-----YNTMIHGYCKED 491

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +  +   L   M+ +  VP+  +++++I      G  E A+ L +KMI ++
Sbjct: 492 NSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQ 542



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 154/344 (44%), Gaps = 36/344 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A + F  M+  GL    +++ +L+ +  +S   ++A+   N++K     K DVY++ I
Sbjct: 110 DKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELKE--RVKFDVYSFGI 167

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +IK C +    D   ++L  +  +G+  + V Y T+IDG  K    E     F  M E G
Sbjct: 168 MIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMG 227

Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                                             G  P+++T N +++ Y   G I +  
Sbjct: 228 LVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAF 287

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
             ++E    GV+A++ T N L     R     +   ++D M+K    P ++TYN +I  F
Sbjct: 288 DLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGF 347

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
              G+++K      ++K  G+ P+ +TY  L+  YSKAG    V  + R++E   +    
Sbjct: 348 CDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSK 407

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
                +I AY +  ++EK  +++ +M++   VPD   +  +I  
Sbjct: 408 VTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHG 451



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 137/307 (44%), Gaps = 2/307 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M  +GL P++  Y  L++ Y   G +  AF   ++M+     + +V TY+ LI   
Sbjct: 254 LFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRE-RGVEANVVTYNTLIGGM 312

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  R    EK++ +M    +  + +TYNT+I G+      ++  SS    ++S G  P 
Sbjct: 313 CREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDK-ASSLLDQLKSNGLSPS 371

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T N +I  Y  +GN + +     E    G+     T  +L  +Y R    +K   +  
Sbjct: 372 LVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYS 431

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+K    P V  Y ++I      G++++  + F+ M    ++P+ + Y +++  Y K  
Sbjct: 432 SMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKED 491

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
              +   +LR++E   ++ +   ++ II    + G  E+   L   M E    P      
Sbjct: 492 NSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILN 551

Query: 316 TMIQAYN 322
            + +A N
Sbjct: 552 MISKAKN 558



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 8/252 (3%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C++    +A  L + M    + P++  Y  L+  +   G LD+A S ++ +KS +   
Sbjct: 311 GMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKS-NGLS 369

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P + TY+ILI+  +K   +  +  +  EM   GI  S VT   +ID Y + ++ E+    
Sbjct: 370 PSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQI 429

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +S+M E  G  PD++    +I      GN+++  K +     M V+      N +   Y 
Sbjct: 430 YSSM-EKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYC 488

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +     +   ++  M+ +   P V +Y+ +I    K G  E+ E    KM    +KP++ 
Sbjct: 489 KEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSA- 547

Query: 243 TYCSLVSAYSKA 254
              S+++  SKA
Sbjct: 548 ---SILNMISKA 556


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 156/362 (43%), Gaps = 37/362 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            QA +L + M + G +P +  Y  L++A    G +DEA + ++D+ S   CKPD  TY+ 
Sbjct: 214 RQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPS-HGCKPDAVTYTP 272

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++KS     R+  +E++ AEM+        VT+NTI+    +    +        M E G
Sbjct: 273 VLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHG 332

Query: 131 GCHPDIFTLNSMISAYGNSGNIE-----------------------------KMEKWYNE 161
            C PDI T +S++    + G ++                              +E+W + 
Sbjct: 333 -CIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHA 391

Query: 162 FNLMG------VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
             LM          D  T N +  S  + G+ D+   V++ M +    P +VTYN +I+ 
Sbjct: 392 EELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDG 451

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
                 I+   E    ++  G KP+ +T+ +L+            + ++  + +SD   D
Sbjct: 452 LCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPD 511

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              FN +I++  Q G + +  E    M E  C+P+  T+  ++ A    G T+ A  L +
Sbjct: 512 ATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLS 571

Query: 336 KM 337
            M
Sbjct: 572 GM 573



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 140/310 (45%), Gaps = 3/310 (0%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P    +  L+ A    G + +A +  +DM     C P V TYSIL+ +  K   +     
Sbjct: 160 PDTFTFNPLIRALCVRGRVPDALAVFDDMLH-RGCSPSVVTYSILLDATCKASGYRQAMV 218

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +L EM   G E   VTYN +I+        +E  +  S +  S GC PD  T   ++ + 
Sbjct: 219 LLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDL-PSHGCKPDAVTYTPVLKSL 277

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             S   +++E+ + E        D  T N +  S  + G+ D+   V+D M +    P +
Sbjct: 278 CGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDI 337

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VTY+ +++     G ++   E   ++K  G KP++I Y +++            + ++ +
Sbjct: 338 VTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAE 397

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY-NALG 325
           +  SD   D   FN +I++  Q G V++  ++   M E  C PD +T+ ++I    N   
Sbjct: 398 MVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERC 457

Query: 326 MTEAAQNLEN 335
           + +A + L N
Sbjct: 458 IDDAMELLSN 467



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 147/324 (45%), Gaps = 4/324 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M S+   P    +  +V++  Q GL+D A   ++ M S   C PD+ TYS ++   
Sbjct: 289 LFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHM-SEHGCIPDIVTYSSILDGL 347

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               R D   ++L+ +   G +   + Y T++ G    +++E  E   + MV S  C PD
Sbjct: 348 CDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSD-CPPD 406

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T N++I++    G +++  K   + +  G   DI T N +          D    ++ 
Sbjct: 407 EVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLS 466

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            +Q     P +VT+N +++        E  E+    M H    P++ T+ +++++  + G
Sbjct: 467 NLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKG 526

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
           L+++    L+ +  +  I +   +N ++ A  +AG  ++  +L   M      PD IT+ 
Sbjct: 527 LLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYN 584

Query: 316 TMIQAYNALGMTEAAQNLENKMIA 339
           T+I      G  E A +L   M++
Sbjct: 585 TVISNITKAGKMEEALDLLRVMVS 608



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 137/307 (44%), Gaps = 4/307 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  + + M   G  P +  Y++++      G +D+A   ++ +KS   CKPD   Y+ 
Sbjct: 319 DRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYG-CKPDTIAYTT 377

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++K      +++  E+++AEM         VT+NT+I    +    +        M E+G
Sbjct: 378 VLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENG 437

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C+PDI T NS+I    N   I+   +  +     G K DI T N L K       ++  
Sbjct: 438 -CNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDA 496

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +M  M      P   T+N VI +  + G + +  E  K M   G  PN  TY  +V A
Sbjct: 497 EQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDA 556

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             KAG   +   +L  + N    L T  +N +IS   +AG +E+  +L   M      PD
Sbjct: 557 LLKAGKTQEALKLLSGMTNGTPDLIT--YNTVISNITKAGKMEEALDLLRVMVSNGLSPD 614

Query: 311 NITFATM 317
            IT+ ++
Sbjct: 615 TITYRSL 621



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 149/318 (46%), Gaps = 2/318 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F+ ML  G  PSV  Y+ L+ A  ++    +A   +++M++   C+PD+ TY++LI + 
Sbjct: 184 VFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRA-KGCEPDIVTYNVLINAM 242

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                 D    IL+++   G +  AVTY  ++     +++++E+E  F+ M  S  C PD
Sbjct: 243 CNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMA-SNKCAPD 301

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T N+++++    G +++  K  +  +  G   DI T + +       G  D    ++ 
Sbjct: 302 EVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLS 361

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            ++     P  + Y  V++        E  EE   +M      P+ +T+ +++++  + G
Sbjct: 362 RLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKG 421

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
           L+ +   ++ Q+  +    D   +N II        ++   EL   ++   C PD +TF 
Sbjct: 422 LVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFN 481

Query: 316 TMIQAYNALGMTEAAQNL 333
           T+++   ++   E A+ L
Sbjct: 482 TLLKGLCSVDRWEDAEQL 499



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 141/297 (47%), Gaps = 11/297 (3%)

Query: 45  LDEAFSTINDMKS---VSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 100
           +D+A + ++ + S      C P  V   +ILIK      R    E++ A    LG   + 
Sbjct: 74  IDDALALVDSIASGGGSGKCLPLPVVPCNILIKRLCSGGRVADAERVFAT---LGASATV 130

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           VTYNT+++GY +A + E+     S M       PD FT N +I A    G +      ++
Sbjct: 131 VTYNTMVNGYCRAGRIEDARRLISGMPFP----PDTFTFNPLIRALCVRGRVPDALAVFD 186

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           +    G    + T +IL  +  +A  Y +   ++D M+ +   P +VTYN++I      G
Sbjct: 187 DMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEG 246

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            +++       +   G KP+++TY  ++ +   +    +V+ +  ++ ++    D   FN
Sbjct: 247 DVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFN 306

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            I+++  Q G V++  ++   M E  C+PD +T+++++     +G  + A  L +++
Sbjct: 307 TIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRL 363



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 154/338 (45%), Gaps = 9/338 (2%)

Query: 2   VMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C  +Q E A  L   M+     P    +  ++++  Q GL+D A   +  M S +
Sbjct: 378 VLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQM-SEN 436

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C PD+ TY+ +I         D   ++L+ +   G +   VT+NT++ G     ++E+ 
Sbjct: 437 GCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDA 496

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E     M+ S  C PD  T N++I++    G + +  +        G   +  T NI+  
Sbjct: 497 EQLMVNMMHSD-CPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVD 555

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +  +AG   +   ++  M      P ++TYN VI    KAG +E+  +  + M   G+ P
Sbjct: 556 ALLKAGKTQEALKLLSGMTN--GTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSP 613

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           ++ITY SL     +     +   +L ++++  +  D  F+N I+  + Q    +   + F
Sbjct: 614 DTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCF 673

Query: 300 LTMKERHCVPDNITFATMIQ--AYNALGMTEAAQNLEN 335
             M    C+PD  T+  +++  AY  L + EA Q L N
Sbjct: 674 AHMVSSGCMPDESTYIILLEALAYECL-LDEAKQLLVN 710


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 160/335 (47%), Gaps = 4/335 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  Q E+A  L E M+   +KPS+  Y++L     +SGL + + S  +++ +    K
Sbjct: 367 GLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGA-EGYK 425

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            DV +Y+ LI             K++ EM   G   ++ T+N +I G+ K ++ ++    
Sbjct: 426 HDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEV 485

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ M++  G   +IFT N M   +   G+  +  K  NE   +G+  +  T NI+ K   
Sbjct: 486 FTIMLKV-GVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLC 544

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    +K   V+  M K   FP  + YN +I+ + K  +  K    + KM   G+ P+ +
Sbjct: 545 KEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIV 604

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L++ +S    + +   + +++    ++ D   F CII+ + + GD++    L+  M
Sbjct: 605 TYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEM 664

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +    P+ +T+  +I  Y  +   + A  L NKM
Sbjct: 665 SQWGKSPNVVTYTCLIDGYFKIKRMDKADFLFNKM 699



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 135/315 (42%), Gaps = 39/315 (12%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   ++A  +F +ML  G++ ++     +   + + G   EA   IN+++ +    
Sbjct: 472 GFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLG-IV 530

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+ YTY+I+IK   K  + +   ++L  M    +   A+ YNT+IDGY K     +    
Sbjct: 531 PNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLL 590

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           ++ M++ G   P I T   +I+ + N   +++    + E                     
Sbjct: 591 YAKMLKVG-IPPSIVTYTMLINMFSNRSKMQEAYYLFKE--------------------- 628

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                         M K+   P  + +  +I  F K G ++     +++M   G  PN +
Sbjct: 629 --------------MIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMSQWGKSPNVV 674

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+  Y K   + K D +  +++  +V  D   +  +I  Y   G  +++ E+F  M
Sbjct: 675 TYTCLIDGYFKIKRMDKADFLFNKMKRDNVTPDGLTYTALIFGYQSLGYSDRVREMFNEM 734

Query: 303 KERHCVPDNITFATM 317
           KE    P+   +AT+
Sbjct: 735 KENGVFPNYTAYATL 749



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 136/307 (44%), Gaps = 2/307 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y A++  + ++G L EAF  + DM+S     P  Y+YSILI    K  + +    ++ EM
Sbjct: 326 YNAVIHEFCRNGELHEAFELLEDMRS-HGISPTAYSYSILIDGLCKKGQVEKALDLIEEM 384

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
               ++ S VTY+++ DG  K+   E   S F  +   G  H D+ + N++I+ +    +
Sbjct: 385 VQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKH-DVISYNTLINGFVLQRD 443

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +    K  +E  + G   +  T N L   + +    DK   V   M K      + T NI
Sbjct: 444 MGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNI 503

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           + + F + GH  +  +   +++  G+ PNS TY  ++    K     K   +L  +  ++
Sbjct: 504 MADEFNREGHFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNN 563

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           V      +N +I  Y +  +  K   L+  M +    P  +T+  +I  ++     + A 
Sbjct: 564 VFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAY 623

Query: 332 NLENKMI 338
            L  +MI
Sbjct: 624 YLFKEMI 630



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 142/349 (40%), Gaps = 43/349 (12%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLD--EAFSTINDMKSVSDCKPDVYTYSILI 72
           ++  V+ S GL+  V ++   + +Y +   LD  E FST+ D    +     +   ++LI
Sbjct: 126 IIIHVLASAGLQMEVQIFLRDIISYYKEVNLDVSELFSTLLDSPQDAHMGGSIIVANVLI 185

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
           K   + +       +  +    G+E + ++ N +++ + +A + E + S F  + +SG  
Sbjct: 186 KVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFEELKDSGPS 245

Query: 133 HPDIFTLNSMISAY-----GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            P++FT   M++ Y     G + +I K  +   E  + G    + T         RAG  
Sbjct: 246 -PNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGLCRAGCV 304

Query: 188 D-KMRSVMDF----------------------------------MQKRFFFPTVVTYNIV 212
           +  +R + D                                   M+     PT  +Y+I+
Sbjct: 305 EFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSIL 364

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           I+   K G +EK  +  ++M    +KP+ +TY SL     K+GL     S+   +     
Sbjct: 365 IDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGY 424

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             D   +N +I+ +    D+    +L   M+    VP++ TF  +I  +
Sbjct: 425 KHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSVPNSFTFNRLIHGF 473



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 142/358 (39%), Gaps = 42/358 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY-----GQSGLLDEAFSTINDMKSV 58
             +  Q E    LFE +   G  P+V  YT +++ Y     G++  + +A   + +M+  
Sbjct: 223 FAEANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMN 282

Query: 59  SDCKPDVYTYSILIK-----SCTKF------------------------HRF----DLIE 85
            +  P V TY   I       C +F                        H F    +L E
Sbjct: 283 GE-SPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGELHE 341

Query: 86  --KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             ++L +M   GI  +A +Y+ +IDG  K  + E+       MV+S    P + T +S+ 
Sbjct: 342 AFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQS-NVKPSLVTYSSLF 400

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                SG  E     ++     G K D+ + N L   +           ++  M+     
Sbjct: 401 DGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMNGSV 460

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P   T+N +I  F K   ++K  E F  M   G++ N  T   +   +++ G   +   +
Sbjct: 461 PNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKL 520

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           + +V++  ++ ++  +N +I    +    EK  E+   M + +  P  I + T+I  Y
Sbjct: 521 INEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGY 578



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 123 FSAMVES------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           FS +++S      GG    I   N +I  +  +  +      + +    G++ +I + N 
Sbjct: 162 FSTLLDSPQDAHMGG---SIIVANVLIKVFAENNMLVDAADVFVQARRFGLELNILSCNF 218

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-----TFGKAGHIEKMEEYFKK 231
           L   +  A   + +RS+ + ++     P V TY I++      +FGK   I K  E  ++
Sbjct: 219 LLNCFAEANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEE 278

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M+  G  P  +TY + +    +AG +     ++R +   +  L++  +N +I  + + G+
Sbjct: 279 MEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHEFCRNGE 338

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + +  EL   M+     P   +++ +I      G  E A +L  +M+
Sbjct: 339 LHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMV 385


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 147/300 (49%), Gaps = 2/300 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P V  Y AL++ + +   +D+A   ++ M+S  D  PD  TY+I+I S     + DL  
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRS-KDFSPDTVTYNIMIGSLCSRGKLDLAL 213

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           K+L ++     + + +TY  +I+        +E       M+ S G  PD+FT N++I  
Sbjct: 214 KVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEML-SRGLKPDMFTYNTIIRG 272

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
               G +++  +      L G + D+ + NIL ++    G +++   +M  M      P 
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           VVTY+I+I T  + G IE+     K MK +G+ P++ +Y  L++A+ + G +      L 
Sbjct: 333 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 392

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            + +   + D   +N +++   + G  ++  E+F  + E  C P++ ++ TM  A  + G
Sbjct: 393 TMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 149/320 (46%), Gaps = 2/320 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           +LSD  +P+V  YT L+ A    G +DEA   +++M S    KPD++TY+ +I+   K  
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS-RGLKPDMFTYNTIIRGMCKEG 277

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             D   +++  +   G E   ++YN ++       K+EE E   + M  S  C P++ T 
Sbjct: 278 MVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMF-SEKCDPNVVTY 336

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           + +I+     G IE+           G+  D  + + L  ++ R G  D     ++ M  
Sbjct: 337 SILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P +V YN V+ T  K G  ++  E F K+   G  PNS +Y ++ SA   +G  ++
Sbjct: 397 DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIR 456

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              ++ ++ ++ +  D   +N +IS   + G V++  EL + M+     P  +T+  ++ 
Sbjct: 457 ALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLL 516

Query: 320 AYNALGMTEAAQNLENKMIA 339
            +      E A N+   M+ 
Sbjct: 517 GFCKAHRIEDAINVLESMVG 536



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 158/341 (46%), Gaps = 5/341 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L + MLS GLKP +  Y  ++    + G++D AF  + +++ +  C+PDV +Y+I
Sbjct: 245 DEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLE-LKGCEPDVISYNI 303

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++     +++  EK++ +M     + + VTY+ +I    +  K EE  +    M E G
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 363

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD ++ + +I+A+   G ++   ++       G   DI   N +  +  + G  D+ 
Sbjct: 364 -LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   + +    P   +YN +      +G   +      +M   G+ P+ ITY S++S 
Sbjct: 423 LEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISC 482

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G++ +   +L  + + +       +N ++  + +A  +E    +  +M    C P+
Sbjct: 483 LCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPN 542

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI---AMKENSGKKL 348
             T+  +I+     G    A  L N ++   A+ E S K+L
Sbjct: 543 ETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRL 583



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 145/322 (45%), Gaps = 3/322 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L E M+  G  P V + T L+  +     + +A   +  ++     +PDV+ Y+ LI   
Sbjct: 111 LLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG--QPDVFAYNALINGF 168

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K +R D   ++L  M         VTYN +I       K +      + ++ S  C P 
Sbjct: 169 CKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL-SDNCQPT 227

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T   +I A    G +++  K  +E    G+K D+ T N + +   + GM D+   ++ 
Sbjct: 228 VITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVR 287

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            ++ +   P V++YNI++      G  E+ E+   KM      PN +TY  L++   + G
Sbjct: 288 NLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDG 347

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I +  ++L+ ++   +  D   ++ +I+A+ + G ++   E   TM    C+PD + + 
Sbjct: 348 KIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN 407

Query: 316 TMIQAYNALGMTEAAQNLENKM 337
           T++      G  + A  +  K+
Sbjct: 408 TVLATLCKNGKADQALEIFGKL 429



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 120/277 (43%), Gaps = 2/277 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV   + LIK            +++  +   G +     YN +I+G+ K  + ++    
Sbjct: 122 PDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRV 180

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M  S    PD  T N MI +  + G ++   K  N+      +  + T  IL ++  
Sbjct: 181 LDRM-RSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATM 239

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  D+   +MD M  R   P + TYN +I    K G +++  E  + ++ +G +P+ I
Sbjct: 240 LEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVI 299

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y  L+ A    G   + + ++ ++ +     +   ++ +I+   + G +E+   L   M
Sbjct: 300 SYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 359

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           KE+   PD  ++  +I A+   G  + A      MI+
Sbjct: 360 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 1/211 (0%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G +PD+     +I  +    NI K  +        G + D+   N L   + +    D  
Sbjct: 119 GYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDA 177

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V+D M+ + F P  VTYNI+I +    G ++   +   ++     +P  ITY  L+ A
Sbjct: 178 TRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEA 237

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G + +   ++ ++ +  +  D   +N II    + G V++  E+   ++ + C PD
Sbjct: 238 TMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPD 297

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            I++  +++A    G  E  + L  KM + K
Sbjct: 298 VISYNILLRALLNQGKWEEGEKLMTKMFSEK 328


>gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 517

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 160/321 (49%), Gaps = 4/321 (1%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  M+  G +P V  YT L++   ++G + +A    N M   S   PD    + L+    
Sbjct: 137 FFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIR-SGVSPDNKACAALVVGLC 195

Query: 77  KFHRFDLIEKILAE-MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
              + DL  +++AE +    ++ S V YN +I G+ KA + E+ E+   + +   GC PD
Sbjct: 196 HARKVDLAYEMVAEEIKSARVKLSIVVYNALISGFCKAGRIEKAEA-LKSFMSKIGCEPD 254

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T N +++ Y ++  +++ E    E    G++ D  + N L K + R    D+  S M 
Sbjct: 255 LVTYNVLLNYYYDNNMLKRAEGVMTEMVRSGIQLDAYSYNQLLKRHCRVSHPDRCYSFML 314

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
              +   F  VV+Y+ +IETF +A + +K  + F++M+ +G+  N +T+ SL+ A+ + G
Sbjct: 315 KEMEPRGFCDVVSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREG 374

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
                  +L Q+    +  D  F+  I+    ++G+V+K   +F  M E    PD I++ 
Sbjct: 375 NSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGIFNDMIEHEITPDAISYN 434

Query: 316 TMIQAYNALG-MTEAAQNLEN 335
           ++I      G +TEA +  E+
Sbjct: 435 SLISGLCRSGRVTEAIKLFED 455



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 143/304 (47%), Gaps = 4/304 (1%)

Query: 18  EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 77
           E + S  +K S+ VY AL+S + ++G +++A +  + M  +  C+PD+ TY++L+     
Sbjct: 209 EEIKSARVKLSIVVYNALISGFCKAGRIEKAEALKSFMSKIG-CEPDLVTYNVLLNYYYD 267

Query: 78  FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES-SFSAMVESGGCHPDI 136
            +     E ++ EM   GI+  A +YN ++  + +    +   S     M   G C  D+
Sbjct: 268 NNMLKRAEGVMTEMVRSGIQLDAYSYNQLLKRHCRVSHPDRCYSFMLKEMEPRGFC--DV 325

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            + +++I  +  + N +K  K + E    G+  ++ T   L K++ R G     + ++D 
Sbjct: 326 VSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLDQ 385

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M +    P  + Y  +++   K+G+++K    F  M    + P++I+Y SL+S   ++G 
Sbjct: 386 MTELGLSPDRIFYTTILDHLCKSGNVDKAYGIFNDMIEHEITPDAISYNSLISGLCRSGR 445

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + +   +   ++  +   D   F  II    +   +    +++  M ++    D     T
Sbjct: 446 VTEAIKLFEDMKGKECCPDELTFKFIIGGLIREKKLSAAYKVWDQMMDKGFTLDRDVSDT 505

Query: 317 MIQA 320
           +I+A
Sbjct: 506 LIKA 509



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 129/308 (41%), Gaps = 37/308 (12%)

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           +TYS  I    K  +F+LI+ +L +M  LG       +N  +D   +  K      +F  
Sbjct: 80  FTYSRFISGLCKVKKFELIDALLRDMETLGFIPDIWAFNIYLDLLCRENKVGFAVQTFFC 139

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           MV+ G   PD+ +   +I+    +G +    + +N     GV  D +    L      A 
Sbjct: 140 MVQRGR-EPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHAR 198

Query: 186 MYD-KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
             D     V + ++      ++V YN +I  F KAG IEK E     M   G +P+ +TY
Sbjct: 199 KVDLAYEMVAEEIKSARVKLSIVVYNALISGFCKAGRIEKAEALKSFMSKIGCEPDLVTY 258

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN------------------------ 280
             L++ Y    ++ + + ++ ++  S + LD   +N                        
Sbjct: 259 NVLLNYYYDNNMLKRAEGVMTEMVRSGIQLDAYSYNQLLKRHCRVSHPDRCYSFMLKEME 318

Query: 281 -----------CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
                       +I  + +A + +K  +LF  M+++  V + +TF ++I+A+   G +  
Sbjct: 319 PRGFCDVVSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSV 378

Query: 330 AQNLENKM 337
           A+ L ++M
Sbjct: 379 AKKLLDQM 386



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 129/308 (41%), Gaps = 38/308 (12%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y + ++   +SG++D A    ++M+  S  +     Y+  I    K  RF+L E I  +M
Sbjct: 12  YRSRIANLVKSGMIDNAVQVFDEMRH-SSYRVFSSDYNRFIGVLVKESRFELAEAIYRDM 70

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
             +G      TY+  I G  K KKFE +++    M E+ G  PDI+  N  +        
Sbjct: 71  MPMGFSLIPFTYSRFISGLCKVKKFELIDALLRDM-ETLGFIPDIWAFNIYLDLLCRENK 129

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
                          V   +QT   + +  GR                    P VV+Y I
Sbjct: 130 ---------------VGFAVQTFFCMVQR-GRE-------------------PDVVSYTI 154

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI-MKVDSILRQVENS 270
           +I    +AG +    E +  M   G+ P++    +LV     A  + +  + +  +++++
Sbjct: 155 LINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSA 214

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            V L    +N +IS + +AG +EK   L   M +  C PD +T+  ++  Y    M + A
Sbjct: 215 RVKLSIVVYNALISGFCKAGRIEKAEALKSFMSKIGCEPDLVTYNVLLNYYYDNNMLKRA 274

Query: 331 QNLENKMI 338
           + +  +M+
Sbjct: 275 EGVMTEMV 282



 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 11/134 (8%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  L + M   GL P    YT ++    +SG +D+A+   NDM    +  PD  +Y+ LI
Sbjct: 379 AKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGIFNDMIE-HEITPDAISYNSLI 437

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
               +  R     K+  +M   G EC    +T+  II G  + KK       +  M++ G
Sbjct: 438 SGLCRSGRVTEAIKLFEDMK--GKECCPDELTFKFIIGGLIREKKLSAAYKVWDQMMDKG 495

Query: 131 GCHPDIFTLNSMIS 144
                 FTL+  +S
Sbjct: 496 ------FTLDRDVS 503


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 148/305 (48%), Gaps = 2/305 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F+ M+  G+ P+V  Y  L+  +  +G L+       +M+  + C P+V TY+ +I + 
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMER-NGCLPNVVTYNTIIDAY 248

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +     K+L  M+  G+  + ++YN +I+G  +  + +E       M +     PD
Sbjct: 249 CKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV-PD 307

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T N++I+ Y N GN  +    + E    G+  ++ T   L  S  +AG  ++    +D
Sbjct: 308 RVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLD 367

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ R   P   TY  +I+ F + G +++  +  K+M   G  P  ITY +L++ +   G
Sbjct: 368 QMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILG 427

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +     +L+++     I D   ++ IIS + +  ++EK  +L + M  +   PD  T++
Sbjct: 428 RMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYS 487

Query: 316 TMIQA 320
           ++IQ 
Sbjct: 488 SLIQG 492



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 146/318 (45%), Gaps = 1/318 (0%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
           S G  P V  Y A++ A  ++    +    I      S   P+VYTY+ILI+        
Sbjct: 160 SYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNL 219

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           ++      EM   G   + VTYNTIID Y K +K  E       M   G  +P++ + N 
Sbjct: 220 EMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKG-LNPNLISYNV 278

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I+     G +++  +   E +      D  T N L   Y   G + +   +   M K  
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P VVTY  +I +  KAG++ +  E+  +M+ RG+ PN  TY +L+  +S+ G + +  
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            I++++  +        +N +I+ +   G +E    L   M ER  +PD ++++T+I  +
Sbjct: 399 QIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGF 458

Query: 322 NALGMTEAAQNLENKMIA 339
                 E A  L+ +M+A
Sbjct: 459 CRNQELEKAFQLKVEMVA 476



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 147/314 (46%), Gaps = 3/314 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLI 84
           K S  V+  +V +  +  L+++A S +N  KS     P V +Y+ ++ +  +  +   + 
Sbjct: 129 KSSSAVFDLVVKSCARVNLINKALSIVNLAKSYG-FMPGVLSYNAILDAVIRTKQSVKIA 187

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           E I  EM   G+  +  TYN +I G+  A   E M   F   +E  GC P++ T N++I 
Sbjct: 188 EGIFKEMVESGVSPNVYTYNILIRGFCTAGNLE-MGLXFFGEMERNGCLPNVVTYNTIID 246

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           AY     I +  K      L G+  ++ + N++     R G   +   +++ M KR + P
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVP 306

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
             VT+N +I  +   G+  +      +M   G+ PN +TY +L+++  KAG + +    L
Sbjct: 307 DRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFL 366

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            Q+ +  +  +   +  +I  + Q G +++  ++   M E    P  IT+  +I  +  L
Sbjct: 367 DQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCIL 426

Query: 325 GMTEAAQNLENKMI 338
           G  E A  L  +MI
Sbjct: 427 GRMEDASGLLQEMI 440



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 141/318 (44%), Gaps = 21/318 (6%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   GL P+   YT L+  + Q G L +A+  + +M   +   P + TY+ LI       
Sbjct: 369 MRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVE-NGFTPTIITYNALINGHCILG 427

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIF 137
           R +    +L EM   G     V+Y+TII G+ +    +E+E +F   VE  + G  PD+ 
Sbjct: 428 RMEDASGLLQEMIERGFIPDVVSYSTIISGFCRN---QELEKAFQLKVEMVAKGISPDVA 484

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T +S+I        + ++   + E   +G+  D  T   L  +Y   G  DK   + D M
Sbjct: 485 TYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEM 544

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS-------- 249
            ++ F P +VTYN++I  F K    ++ +    K+ +    PN ITY +L+         
Sbjct: 545 IQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFK 604

Query: 250 -------AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
                   +   GL+ + D +L  +      L+   +N II  + + G++EK   L+  M
Sbjct: 605 SALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEM 664

Query: 303 KERHCVPDNITFATMIQA 320
                 P ++T   + ++
Sbjct: 665 LHSGFAPHSVTIMALAKS 682



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 155/328 (47%), Gaps = 2/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E     F  M  +G  P+V  Y  ++ AY +   + EAF  +  M ++    P++ +Y++
Sbjct: 220 EMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLM-ALKGLNPNLISYNV 278

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    +  +     +IL EMS        VT+NT+I+GY     F +     + MV++ 
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKN- 337

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P++ T  ++I++   +GN+ +  ++ ++    G+  + +T   L   + + G   + 
Sbjct: 338 GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQA 397

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +M  M +  F PT++TYN +I      G +E      ++M  RG  P+ ++Y +++S 
Sbjct: 398 YQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISG 457

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + +   + K   +  ++    +  D   ++ +I    +   + ++ +LF  M      PD
Sbjct: 458 FCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPD 517

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
            +T+ ++I AY   G  + A  L ++MI
Sbjct: 518 EVTYTSLINAYCIEGDLDKALRLHDEMI 545



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 151/334 (45%), Gaps = 4/334 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K ++  +A  L  +M   GL P++  Y  +++   + G + E    + +M S     PD 
Sbjct: 250 KLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM-SKRRYVPDR 308

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFS 124
            T++ LI        F     + AEM   G+  + VTY T+I+   KA      ME  F 
Sbjct: 309 VTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAME--FL 366

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +   G HP+  T  ++I  +   G +++  +   E    G    I T N L   +   
Sbjct: 367 DQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCIL 426

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  +    ++  M +R F P VV+Y+ +I  F +   +EK  +   +M  +G+ P+  TY
Sbjct: 427 GRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATY 486

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+    K   + +V  + +++ +  +  D   +  +I+AY   GD++K   L   M +
Sbjct: 487 SSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQ 546

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +   PD +T+  +I  +N    T+ A+ L  K++
Sbjct: 547 KGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 140/287 (48%), Gaps = 10/287 (3%)

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM----SYLGIECSAVTYNTIIDGYGK 112
           S   CK     + +++KSC    R +LI K L+ +    SY G     ++YN I+D   +
Sbjct: 124 SYYQCKSSSAVFDLVVKSCA---RVNLINKALSIVNLAKSY-GFMPGVLSYNAILDAVIR 179

Query: 113 AKKFEEM-ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
            K+  ++ E  F  MVESG   P+++T N +I  +  +GN+E    ++ E    G   ++
Sbjct: 180 TKQSVKIAEGIFKEMVESG-VSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNV 238

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
            T N +  +Y +     +   ++  M  +   P +++YN+VI    + G +++  E  ++
Sbjct: 239 VTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEE 298

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M  R   P+ +T+ +L++ Y   G   +   +  ++  + +  +   +  +I++  +AG+
Sbjct: 299 MSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGN 358

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           + +  E    M++R   P+  T+ T+I  ++  G  + A  +  +M+
Sbjct: 359 LNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMV 405



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 146/331 (44%), Gaps = 4/331 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G C+  Q ++ S + E M      P    +  L++ Y   G   +A     +M   
Sbjct: 278 VVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVK- 336

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +   P+V TY+ LI S  K    +   + L +M   G+  +  TY T+IDG+ +    ++
Sbjct: 337 NGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQ 396

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  MVE+G   P I T N++I+ +   G +E       E    G   D+ + + + 
Sbjct: 397 AYQIMKEMVENGFT-PTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTII 455

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + R    +K   +   M  +   P V TY+ +I+   K   + ++ + F++M   G+ 
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLP 515

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ +TY SL++AY   G + K   +  ++       D   +N +I+ + +    ++   L
Sbjct: 516 PDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRL 575

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEA 329
            L +     VP+ IT+ T+I   N L    A
Sbjct: 576 LLKLLYEESVPNEITYNTLIDNCNNLEFKSA 606



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 139/316 (43%), Gaps = 21/316 (6%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTY 68
           E AS L + M+  G  P V  Y+ ++S + ++  L++AF    +M  K +S   PDV TY
Sbjct: 430 EDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS---PDVATY 486

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S LI+   K  R   +  +  EM  LG+    VTY ++I+ Y      ++       M++
Sbjct: 487 SSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQ 546

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWY----------NEFNLMGVKADIQTLNI-- 176
            G   PDI T N +I+ +      ++ ++            NE     +  +   L    
Sbjct: 547 KG-FSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKS 605

Query: 177 ---LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
              L K +   G+ ++   V++ M ++ +      YN++I    K G+IEK    +K+M 
Sbjct: 606 ALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEML 665

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           H G  P+S+T  +L  +    G  ++++ +L     S  I +      +I    + G+++
Sbjct: 666 HSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMD 725

Query: 294 KMGELFLTMKERHCVP 309
            +  +   M     +P
Sbjct: 726 AVFNVLKDMALSGLLP 741



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 25/257 (9%)

Query: 5   GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 60
           G CKQ     +  LF+ MLS GL P    YT+L++AY   G LD+A    ++M  K  S 
Sbjct: 492 GLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFS- 550

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID------------ 108
             PD+ TY++LI    K  R    +++L ++ Y     + +TYNT+ID            
Sbjct: 551 --PDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALA 608

Query: 109 ---GYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
              G+       E +    +M++ G   + +++  N +I  +   GNIEK    Y E   
Sbjct: 609 LMKGFCMKGLMNEADRVLESMLQKGYKLNEEVY--NVIIHGHSKVGNIEKAYNLYKEMLH 666

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G      T+  L KS    G   ++  ++D+  K           ++I    K G+++ 
Sbjct: 667 SGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDA 726

Query: 225 MEEYFKKMKHRGMKPNS 241
           +    K M   G+ P S
Sbjct: 727 VFNVLKDMALSGLLPYS 743


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 162/342 (47%), Gaps = 8/342 (2%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E A  L   M+ +G+ P+V  Y+ ++++   SG ++ AF+    M  +  C 
Sbjct: 253 GMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQM-FLRGCD 311

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKI--LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            +++T++ LIK C  F R  L E +     M   G E + V YNT+I G       EE  
Sbjct: 312 ANIHTFTPLIKGC--FMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEAL 369

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M  SG C P++ T + +I  +  SG++    + +N     G + ++ T   +   
Sbjct: 370 QVCDQMQRSG-CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDV 428

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             +  M+D+  S+++ M      P  +T+N  I+     G +E   +  ++M+  G  PN
Sbjct: 429 LCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPN 488

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY  L+ A  +     +   + +++E  ++  +   +N ++  + +AG + +  +LF 
Sbjct: 489 ITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFG 548

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
               R   PD+IT+ TMI AY   G  + A  L  ++ +MKE
Sbjct: 549 KALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKE 590



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 143/321 (44%), Gaps = 15/321 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + + A  LF  M + G  P    YT +VS+  ++G +D+A             KP
Sbjct: 189 LCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRF------KP 242

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V  Y+ LI    K  R ++  K+L EM   G++ + V+Y+ II+    +   E   + F
Sbjct: 243 SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALF 302

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLM---GVKADIQTLNILTK 179
           + M    GC  +I T   +I      G + E ++ W     LM   G + ++   N L  
Sbjct: 303 AQMFLR-GCDANIHTFTPLIKGCFMRGKLYEALDLW----KLMIQDGCEPNVVAYNTLIH 357

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                G  ++   V D MQ+    P V TY+I+I+ F K+G +    E + +M   G +P
Sbjct: 358 GLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRP 417

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N +TY  +V    K  +  + +S++ ++       +T  FN  I      G VE   +L 
Sbjct: 418 NVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLL 477

Query: 300 LTMKERHCVPDNITFATMIQA 320
             M+   C+P+  T+  ++ A
Sbjct: 478 ERMQGHGCLPNITTYNELLDA 498



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 146/331 (44%), Gaps = 15/331 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN----DMKSVSDCKPDVY 66
           EQA  +F  +   G KP+V +Y  L+ A     L +  F  IN    +MK      P+V+
Sbjct: 126 EQALKMFYRIGEFGCKPTVRIYNHLLDAL----LSENKFQMINPLYTNMKK-DGLIPNVF 180

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY+IL+K+  K  R D   K+  EMS  G    AVTY T++    KA K ++      A 
Sbjct: 181 TYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDD------AR 234

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
             +G   P +   N++I      G IE   K   E    GV  ++ + + +  S   +G 
Sbjct: 235 ELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGN 294

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            +   ++   M  R     + T+  +I+     G + +  + +K M   G +PN + Y +
Sbjct: 295 VELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNT 354

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+      G + +   +  Q++ S  + +   ++ +I  + ++GD+    E +  M    
Sbjct: 355 LIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHG 414

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           C P+ +T+  M+       M + A +L  KM
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 6/272 (2%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY ++I+   +    D+++ IL +M   GI C    +  II+GY +    E+    F  +
Sbjct: 76  TYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRI 135

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            E G C P +   N ++ A  +    + +   Y      G+  ++ T NIL K+  +   
Sbjct: 136 GEFG-CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDR 194

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D    +   M  +   P  VTY  ++ +  KAG I+   E   + K     P+   Y +
Sbjct: 195 VDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNA 249

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+    K G I     +L ++ ++ V  +   ++CII++   +G+VE    LF  M  R 
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           C  +  TF  +I+     G    A +L   MI
Sbjct: 310 CDANIHTFTPLIKGCFMRGKLYEALDLWKLMI 341



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 7/174 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  L E M   G  P++  Y  L+ A  +    +EAF    ++++  + +P++ TY+ 
Sbjct: 471 EWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEA-RNLQPNLVTYNT 529

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMV 127
           ++   ++        ++  +    G    ++TYNT+I  Y   GK K   ++    S+M 
Sbjct: 530 VLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMK 589

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           E    HPDI T  S+I    N  NIE+   + ++    G+  +  T N L + +
Sbjct: 590 EW---HPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 35/170 (20%)

Query: 202 FFPTVVTYNIVIETFG-----------------------------------KAGHIEKME 226
           F  T  TY ++IE  G                                   + G  E+  
Sbjct: 70  FQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQAL 129

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
           + F ++   G KP    Y  L+ A         ++ +   ++   +I +   +N ++ A 
Sbjct: 130 KMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKAL 189

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
            +   V+   +LF+ M  + C PD +T+ TM+ +    G  + A+ L  +
Sbjct: 190 CKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGR 239


>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 161/354 (45%), Gaps = 38/354 (10%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML  G    +  +  L+ A  +   +D+A+    DMK    C+PD +TY+I+I+   K  
Sbjct: 214 MLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKR-RHCEPDTFTYTIMIRMTGKAG 272

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           + D    +   M   G   + + YNT+I+   K +  ++    FS MVE+G C P+ FT 
Sbjct: 273 KTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENG-CQPNEFTY 331

Query: 140 NSMISAYGNSG------NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           + +++     G      NI +M K Y   N       ++TL+ L  S     ++  M +V
Sbjct: 332 SVLLNVLVAEGQLNKLDNIVEMSKKY--MNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNV 389

Query: 194 MDFMQK------------------------RFFFPTVVT----YNIVIETFGKAGHIEKM 225
            D   K                        RF    + T    YN V    G+   +  +
Sbjct: 390 HDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHI 449

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
            + ++KMK  G  P+  TY  L+S+Y +AG +     I  ++ENS+   D   +N +I+ 
Sbjct: 450 HDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINC 509

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            G+ GDV++    F  M+E+   PD +T++T+I+ +      E A +L ++MIA
Sbjct: 510 LGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIA 563



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/348 (22%), Positives = 156/348 (44%), Gaps = 36/348 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M GK  + +++  LF+ ML  G   ++  Y  ++ A  +  + D+A    + M   + C+
Sbjct: 267 MTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVE-NGCQ 325

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMS--YLGIECSAVTYNTIIDGYGKAKKFEEM- 119
           P+ +TYS+L+       + + ++ I+ EMS  Y+  +  A    T+    G + +   + 
Sbjct: 326 PNEFTYSVLLNVLVAEGQLNKLDNIV-EMSKKYMNKQIYAYFVRTL-SKLGHSSEAHRLF 383

Query: 120 -----------ESSFSAMVES--------------GGCH-----PDIFTLNSMISAYGNS 149
                      + ++ +M+ES                 H      D    N++ +A G  
Sbjct: 384 CNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRL 443

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
             +  +   Y +    G   DI T NIL  SYGRAG  D    + + ++     P V++Y
Sbjct: 444 KQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISY 503

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N +I   GK G +++    FK+M+ +G+ P+ +TY +L+  + K   +    S+  ++  
Sbjct: 504 NSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIA 563

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
                +   +N ++    ++G   +  +L+  +K++   PD+IT+A +
Sbjct: 564 EGCSPNLVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYAVL 611



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 9/220 (4%)

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN-IEKMEKWYNEFNLMGVKADIQT 173
           +FE+ ES    M E  G    I T+N +I  +G+    +  ++KW   FN    K     
Sbjct: 139 RFEQTESLLDDM-EKRGVKGSISTVNILIGFFGDLDRCVGLVKKWGLRFNAYSYKC---- 193

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
              L + Y R    DK   V   M +  +   +  +N++++   K   ++K  + F+ MK
Sbjct: 194 ---LLQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMK 250

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            R  +P++ TY  ++    KAG   +  ++ + +      L+   +N +I A  +    +
Sbjct: 251 RRHCEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMAD 310

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           K   LF  M E  C P+  T++ ++    A G      N+
Sbjct: 311 KAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDNI 350


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 155/312 (49%), Gaps = 5/312 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  + EQ   + E+++  GL P+  +Y  L++ Y Q   L  AFS    MKS    +PD
Sbjct: 349 GKVAKAEQ---VLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKS-RHIRPD 404

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TY+ LI    K       E ++ EM   G++ S  T+NT+ID YG+A + E+  +  S
Sbjct: 405 HITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLS 464

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +  G   ++ +  S++ A+  +G I +     ++     V  + Q  N +  +Y  +
Sbjct: 465 DM-QDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIES 523

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  ++   +++ M+      ++ TYN++++   K   I++ EE    + ++G++P+ ++Y
Sbjct: 524 GGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSY 583

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +++SA    G   +   +L+++   D+      ++ ++SA G AG V  M  L+  M  
Sbjct: 584 NTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVH 643

Query: 305 RHCVPDNITFAT 316
           ++  P +  + T
Sbjct: 644 KNVEPSSSIYGT 655



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 161/357 (45%), Gaps = 37/357 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + ML DG KP+V  Y  L+S   ++G +DE  + +++M S S   PD +TYSIL    
Sbjct: 252 LRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYS-MLPDGFTYSILFDGL 310

Query: 76  T-----------------------------------KFHRFDLIEKILAEMSYLGIECSA 100
           T                                   K  +    E++L  + + G+  + 
Sbjct: 311 TRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTT 370

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
             YNT+I+GY + +  +   S F  M +S    PD  T N++I+       I + E    
Sbjct: 371 AIYNTLINGYCQVRDLQGAFSIFEQM-KSRHIRPDHITYNALINGLCKMEMITEAEDLVM 429

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E    GV   ++T N L  +YGRAG  +K  +V+  MQ +     V+++  V++ F K G
Sbjct: 430 EMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNG 489

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            I +       M H+ + PN+  Y S++ AY ++G   +   ++ ++++S V      +N
Sbjct: 490 KIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYN 549

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            ++    +   +++  EL   +  +   PD +++ T+I A    G T+ A  L  +M
Sbjct: 550 LLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEM 606



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 156/357 (43%), Gaps = 35/357 (9%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM-KSVSDCKPDVYTYSILIKSC 75
           F ++++ G +P    +   V A   +G LDEA + +  M +S     PD ++Y+++I   
Sbjct: 146 FGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGL 205

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE------- 128
            +  +     K+  EM   G+  + +TYNT+IDG+ K    E        M++       
Sbjct: 206 WRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNV 265

Query: 129 -------SGGCH--------------------PDIFTLNSMISAYGNSGNIEKMEKWYNE 161
                  SG C                     PD FT + +      +G+   M   + E
Sbjct: 266 VTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGE 325

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               GV     T +IL     + G   K   V++ +      PT   YN +I  + +   
Sbjct: 326 SLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRD 385

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           ++     F++MK R ++P+ ITY +L++   K  +I + + ++ ++E S V      FN 
Sbjct: 386 LQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNT 445

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +I AYG+AG +EK   +   M+++    + I+F ++++A+   G    A  + + MI
Sbjct: 446 LIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMI 502



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 143/326 (43%), Gaps = 23/326 (7%)

Query: 14  SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 73
           +LL E +LS G    V     L+ A G                     +PD + ++  ++
Sbjct: 127 NLLLESLLSVGRHADVRAAFGLLVAAG--------------------ARPDTFAWNKAVQ 166

Query: 74  SCTKFHRFDLIEKILAEM--SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +C      D    +L  M  S       A +YN +I G  ++ K  +    F  MV+ G 
Sbjct: 167 ACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRG- 225

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P+  T N+MI  +   G++E   +  ++    G K ++ T N+L     RAG  D+ R
Sbjct: 226 VAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETR 285

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           ++MD M      P   TY+I+ +   + G    M   F +   +G+   + T   L++  
Sbjct: 286 ALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGL 345

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K G + K + +L  + ++ ++  T  +N +I+ Y Q  D++    +F  MK RH  PD+
Sbjct: 346 CKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDH 405

Query: 312 ITFATMIQAYNALGMTEAAQNLENKM 337
           IT+  +I     + M   A++L  +M
Sbjct: 406 ITYNALINGLCKMEMITEAEDLVMEM 431


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 164/375 (43%), Gaps = 38/375 (10%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CKQ   E+A  + +    +GL     +Y   V+ Y + G +++A  TI  M+S 
Sbjct: 356 ILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESF 415

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              +P+  T++ LI         D  E+ + +M+  G+  S  TYNT+IDGYGK   F+ 
Sbjct: 416 G-LRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDR 474

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  M E  G  P++ +  S+I+     G I + E    +    GV  + Q  N+L 
Sbjct: 475 CFQILEQM-EEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLI 533

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                 G         D M +    PT+VTYN++I+   K G + + E++  ++   G  
Sbjct: 534 DGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHS 593

Query: 239 PNSITYCSLVSAYSKAGLIMK----------------------------------VDSIL 264
           P+ ITY SL+S Y+ AG + K                                  V+ + 
Sbjct: 594 PDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIELVEKLY 653

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++   +++ D   +N +I  Y + G+ +K   L   M ++   PD +T+ ++I  +   
Sbjct: 654 NEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFRE 713

Query: 325 GMTEAAQNLENKMIA 339
           G     ++L N M A
Sbjct: 714 GKLSNIKDLVNNMKA 728



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 144/338 (42%), Gaps = 38/338 (11%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+ ++A    + M   G+ PSV+ Y  L+  YG+    D  F  +  M+ +   KP+V +
Sbjct: 435 KEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIG-VKPNVVS 493

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--------------------------- 100
           Y  LI    K  +    E +L +M   G+  +A                           
Sbjct: 494 YGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMM 553

Query: 101 --------VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152
                   VTYN +IDG  K  K  E E  F   + S G  PD+ T NS+IS Y N+GN+
Sbjct: 554 RSEISPTLVTYNVLIDGLCKKGKLTEAED-FLTQITSSGHSPDVITYNSLISGYANAGNV 612

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
            K    Y     +G+K  ++T + L     + G+ + +  + + M +    P  V YN +
Sbjct: 613 SKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGI-ELVEKLYNEMLQMNLLPDRVVYNAM 671

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           I  + + G+ +K     + M  +G+ P+ +TY SL+  + + G +  +  ++  ++  ++
Sbjct: 672 IHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKEL 731

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
                 ++ ++  +    D       +  M E + +P+
Sbjct: 732 APKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPN 769



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 135/310 (43%), Gaps = 37/310 (11%)

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YT SIL+    K  + +  E+IL + +  G+    V YNT ++GY +     +   +   
Sbjct: 352 YTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIER 411

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M ES G  P+  T NS+I  + +   ++K E+W  +    GV   ++T N L   YG+  
Sbjct: 412 M-ESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLC 470

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS---- 241
            +D+   +++ M++    P VV+Y  +I    K G I + E   + M  RG+ PN+    
Sbjct: 471 TFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYN 530

Query: 242 -------------------------------ITYCSLVSAYSKAGLIMKVDSILRQVENS 270
                                          +TY  L+    K G + + +  L Q+ +S
Sbjct: 531 MLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSS 590

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
               D   +N +IS Y  AG+V K   L+ TMK     P   T+  +I   +  G+ E  
Sbjct: 591 GHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGI-ELV 649

Query: 331 QNLENKMIAM 340
           + L N+M+ M
Sbjct: 650 EKLYNEMLQM 659



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 120/280 (42%), Gaps = 9/280 (3%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           + D + Y+  I++  K     +  + L  M   G+  +   YN +I G  + K+  + E 
Sbjct: 173 RTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEK 232

Query: 122 SFSAMVESGGCHPD----IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
            F  M     C+ +    I T N++I  Y   G ++   K         V  +I T N L
Sbjct: 233 MFDEM-----CNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSL 287

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                +     + RS++  M+   F P   TY+I+ +   +        E +++   +G+
Sbjct: 288 LSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGI 347

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           + N+ T   L++   K G + K + IL++   + ++ D   +N  ++ Y + GD+ K   
Sbjct: 348 RINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAIL 407

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               M+     P++ITF ++I  +  +   + A+    KM
Sbjct: 408 TIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKM 447



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 95/218 (43%), Gaps = 5/218 (2%)

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           +E+ G   D F     I A     N++   ++ +     GV+ ++   N+L     R   
Sbjct: 167 IENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKR 226

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
                 + D M       ++VTYN +I+ + K G ++   +  ++MK + + PN IT+ S
Sbjct: 227 IRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNS 286

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+S   K   + +  S+L+++E +  + D   ++ +     +  D     EL+    E+ 
Sbjct: 287 LLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKG 346

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNL-----ENKMIA 339
              +N T + ++      G  E A+ +     EN ++A
Sbjct: 347 IRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVA 384


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 174/388 (44%), Gaps = 60/388 (15%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + + A  +F+ M   G+ P+  +YT ++S   Q+   D+    +N MK VS C 
Sbjct: 210 GLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMK-VSGCC 268

Query: 63  PDVYTYSILIKSCTKFHRFD----LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           PD  T + L+    K  + D    L++    E   LGI+     Y+++IDG  +AK+++E
Sbjct: 269 PDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIK----GYSSLIDGLFRAKRYDE 324

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           ++     M ++G   PD+     +I  +   G ++      N+    G+  D    N L 
Sbjct: 325 VQEWCRKMFKAG-IEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALI 383

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           K +   G+ DK RS+   + K   FPT  TY I+I    + G +++  + F +M++ G  
Sbjct: 384 KGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCS 443

Query: 239 PNSITYCSLVSAYSKAG------------------------------------------- 255
           P+ +T+ +L+    KAG                                           
Sbjct: 444 PSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVER 503

Query: 256 -----LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
                LI+K   +L Q+ +S V+ D   +N +I+ + +A ++    +LF  ++ +   PD
Sbjct: 504 LCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPD 563

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
           ++T+ T+I  ++ +   E A  + ++M+
Sbjct: 564 SVTYGTLIDGFHRVDREEDAFRVLDQMV 591



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 147/341 (43%), Gaps = 37/341 (10%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS---------------------- 69
           ++ L++AY +SG+ ++A  +   MK    CKPDV+TY+                      
Sbjct: 134 FSVLIAAYAKSGMAEKAVESFGKMKDFG-CKPDVFTYNSILHVMVQKEVFLLALAVYNQM 192

Query: 70  -------------ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
                        IL+    K  + D   K+  EM+  GI  + + Y  I+ G  +AK+ 
Sbjct: 193 LKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRT 252

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +++    + M  SG C PD  T N+++  +   G I++       F   G    I+  + 
Sbjct: 253 DDVHRLLNTMKVSGCC-PDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSS 311

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L     RA  YD+++     M K    P VV Y I+I  F + G ++        M  RG
Sbjct: 312 LIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRG 371

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + P++  Y +L+  +   GL+ K  S+  ++  +D    +  +  +I    + G +++  
Sbjct: 372 LSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEAR 431

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++F  M+   C P  +TF  +I      G  E A++L  KM
Sbjct: 432 QIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM 472



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 15/294 (5%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G++P V +YT L+  + + G++D A + +NDM +     PD Y Y+ LIK      
Sbjct: 332 MFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM-TQRGLSPDTYCYNALIKGFCDVG 390

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             D    +  E+S      ++ TY  +I G  +    +E    F+ M E+ GC P I T 
Sbjct: 391 LLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQM-ENLGCSPSIMTF 449

Query: 140 NSMISAYGNSGNIE-------KMEKWYNEFNLMGVKA------DIQTLNILTKSYGRAGM 186
           N++I     +G +E       KME   N    + +        D  +L  + +    +G+
Sbjct: 450 NALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGL 509

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
             K   ++  +      P ++TYN++I  F KA +I    + F++++ +G  P+S+TY +
Sbjct: 510 ILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGT 569

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           L+  + +         +L Q+  +     +  + C+++   + G +     L+L
Sbjct: 570 LIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWL 623



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 119/271 (43%), Gaps = 1/271 (0%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           T++++I    K   FD   KIL E+    I+    T++ +I  Y K+   E+   SF  M
Sbjct: 98  THNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKM 157

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            +  GC PD+FT NS++               YN+   +    +  T  IL     + G 
Sbjct: 158 -KDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGK 216

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D    + D M ++   P  + Y I++    +A   + +      MK  G  P+SIT  +
Sbjct: 217 TDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNA 276

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+  + K G I +  ++L+  E    +L    ++ +I    +A   +++ E    M +  
Sbjct: 277 LLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAG 336

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             PD + +  +I+ +  +GM + A N+ N M
Sbjct: 337 IEPDVVLYTILIRGFCEVGMVDYALNMLNDM 367



 Score = 44.7 bits (104), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 46/84 (54%)

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           IL +++NS++ +  P F+ +I+AY ++G  EK  E F  MK+  C PD  T+ +++    
Sbjct: 118 ILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMV 177

Query: 323 ALGMTEAAQNLENKMIAMKENSGK 346
              +   A  + N+M+ +  N  +
Sbjct: 178 QKEVFLLALAVYNQMLKLNYNPNR 201


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 163/363 (44%), Gaps = 40/363 (11%)

Query: 9   QPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           Q ++  L F V+   +  GL+P++  +T L++   + G   +A    +DM +   C+PDV
Sbjct: 140 QLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVA-KGCQPDV 198

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YTY+ +I    K         +L +M   G + + VTY+T+ID   + +   E    FS 
Sbjct: 199 YTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSY 258

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M ++ G  PDIFT  S+I         ++     NE   + +  DI T N+L  ++ + G
Sbjct: 259 M-KAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEG 317

Query: 186 MYDKMRSVM--------------------------DFMQKRFFF---------PTVVTYN 210
              +   V+                          D ++ R  F         P + +YN
Sbjct: 318 KVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYN 377

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           I+I  + KA  I++  + F +M H+G+ PN+++Y +L+  + + G + +   + R +  +
Sbjct: 378 ILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTN 437

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
             + D   ++ ++  + + G + K   LF  M+  +  P+ + +  ++ A    G  + A
Sbjct: 438 GNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDA 497

Query: 331 QNL 333
           + L
Sbjct: 498 RKL 500



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 165/356 (46%), Gaps = 36/356 (10%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  ML     P +  +  L+SA  + G   +   +++    +    P++YT SI +    
Sbjct: 80  FNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFC 139

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           +  R DL   +LA++  LG++ + VT+ T+I+G  K  +F +    F  MV + GC PD+
Sbjct: 140 QLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMV-AKGCQPDV 198

Query: 137 FTLNSMISAY-------GNSGNIEKME---------------------KWYNE----FNL 164
           +T N++I+           +G ++KME                     +  NE    F+ 
Sbjct: 199 YTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSY 258

Query: 165 M---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
           M   G+  DI T   L +   +   + +  ++++ M      P +VT+N++++TF K G 
Sbjct: 259 MKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGK 318

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           + +     K M   G++PN +TY SL+  YS    +++   +   +       +   +N 
Sbjct: 319 VSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNI 378

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +I+ Y +A  +++  +LF  M  +   P+N+++ T+I  +  LG    AQ+L   M
Sbjct: 379 LINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNM 434



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 160/336 (47%), Gaps = 8/336 (2%)

Query: 5   GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E A+   L + M   G +P++  Y+ L+ +  +  L++EA    + MK+     
Sbjct: 207 GLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKA-KGIS 265

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD++TY+ LI+   KF R+     +L EM+ L I    VT+N ++D + K  K  E    
Sbjct: 266 PDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGV 325

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E G   P++ T +S++  Y    ++ +  K ++     G K +I + NIL   Y 
Sbjct: 326 LKTMTEMG-VEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYC 384

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A   D+   + + M  +   P  V+YN +I  F + G + + ++ F+ M   G  P+  
Sbjct: 385 KAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLF 444

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+  + K G + K   + R ++++ +  +   +  ++ A  ++G+ +   +LF  +
Sbjct: 445 TYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSEL 504

Query: 303 KERHCVPDNITFATMIQAYNALGM----TEAAQNLE 334
             +   P    + T+I      G+     EA +N+E
Sbjct: 505 FVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNME 540



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 145/330 (43%), Gaps = 37/330 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  M + G+ P +  YT+L+    +     EA + +N+M S+ +  PD+ T+++L+ + 
Sbjct: 255 IFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSL-NIMPDIVTFNVLVDTF 313

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +      +L  M+ +G+E + VTY++++ GY       E    F  M+ + GC P+
Sbjct: 314 CKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMI-TKGCKPN 372

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA-------------------------- 169
           IF+ N +I+ Y  +  I++  + +NE    G+                            
Sbjct: 373 IFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFR 432

Query: 170 ---------DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
                    D+ T +IL   + + G   K   +   MQ  +  P +V Y I++    K+G
Sbjct: 433 NMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSG 492

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
           + +   + F ++  +G++P+   Y ++++   K GL+ +     R +E      D   +N
Sbjct: 493 NHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYN 552

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            II    Q  D  +   L   M++R  + D
Sbjct: 553 VIIRGLLQHKDESRALLLVGEMRDRGFIAD 582



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 14/246 (5%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN- 160
           TY    D     +  ++  +SF+ M+      P I     ++SA      I KM ++Y+ 
Sbjct: 59  TYQHKNDASSSFRNIDDALASFNHMLHRKPL-PCIIQFAKLLSA------IVKMGQYYDV 111

Query: 161 ------EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
                 +  L+G+  +I TL+I    + +    D   SV+  + K    PT+VT+  +I 
Sbjct: 112 VISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLIN 171

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
              K G   +  E F  M  +G +P+  TY ++++   K G       +L+++E +    
Sbjct: 172 GLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQP 231

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           +   ++ +I +  +   V +  ++F  MK +   PD  T+ ++IQ        + A  L 
Sbjct: 232 NMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALL 291

Query: 335 NKMIAM 340
           N+M ++
Sbjct: 292 NEMTSL 297



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/240 (19%), Positives = 98/240 (40%)

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           + +  ++    K  ++ ++  S S  +E  G  P+I+TL+  ++ +     ++       
Sbjct: 93  IQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLA 152

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           +   +G++  I T   L     + G + +   + D M  +   P V TYN +I    K G
Sbjct: 153 KVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIG 212

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
                    KKM+  G +PN +TY +L+ +  +  L+ +   I   ++   +  D   + 
Sbjct: 213 ETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYT 272

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +I    +    ++   L   M   + +PD +TF  ++  +   G    A  +   M  M
Sbjct: 273 SLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEM 332


>gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 133/271 (49%), Gaps = 2/271 (0%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y++ +KS     +F LIE++  EM   G+E   +TY+TII    +   F++    F  M 
Sbjct: 202 YNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYSTIITCAKRCNLFDKAVKWFERMY 261

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           ++G   PD  T ++++  Y   G +E++   Y      G K D     +L K +G AG Y
Sbjct: 262 KTG-LMPDEVTYSAILDVYAKLGKVEEVLSLYERGRASGWKPDPIAFAVLGKMFGEAGDY 320

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D +R V+  M+     P +V YN ++E  GKAG        F++M   G+ P++ T  +L
Sbjct: 321 DGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLTAL 380

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-RH 306
           V  Y KA        +  ++ ++   +D   +N ++S     G  E+  +LF  MK+  H
Sbjct: 381 VKIYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFEDMKKSEH 440

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           C PD+ ++  M+  Y + G  + A  L ++M
Sbjct: 441 CRPDSWSYTAMLNIYGSGGNVDRAMQLFDEM 471



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 155/348 (44%), Gaps = 48/348 (13%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C   ++A   FE M   GL P    Y+A++  Y + G ++E  S + +    S  KPD 
Sbjct: 246 RCNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLS-LYERGRASGWKPDP 304

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             +++L K   +   +D I  +L EM  LG++ + V YNT+++  GKA K     S F  
Sbjct: 305 IAFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEE 364

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           MV S G  PD  TL +++  YG +       +W  +                        
Sbjct: 365 MVGS-GVIPDAKTLTALVKIYGKA-------RWARD---------------------ALE 395

Query: 186 MYDKMRS---VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RGMKPNS 241
           ++++MRS    MDF          + YN ++      G  E+ E+ F+ MK     +P+S
Sbjct: 396 LWERMRSNGWPMDF----------ILYNTLLSMCADLGLEEEAEKLFEDMKKSEHCRPDS 445

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            +Y ++++ Y   G + +   +  ++    V ++     C+    G+A  ++ + ++F  
Sbjct: 446 WSYTAMLNIYGSGGNVDRAMQLFDEMSELGVQINVMGCTCLSQCLGRARRIDDLVKVFEV 505

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
             ER   PD+     ++   + +   E A++  NK++A  + +  KL+
Sbjct: 506 SLERGVKPDDRLCGCLL---SVVSFCEGAED-ANKVLACLQQANPKLV 549



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 1/202 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M G+    +    + + M S G++P++ VY  L+ A G++G    A S   +M   S   
Sbjct: 313 MFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVG-SGVI 371

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  T + L+K   K        ++   M   G     + YNT++         EE E  
Sbjct: 372 PDAKTLTALVKIYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKL 431

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +S  C PD ++  +M++ YG+ GN+++  + ++E + +GV+ ++     L++  G
Sbjct: 432 FEDMKKSEHCRPDSWSYTAMLNIYGSGGNVDRAMQLFDEMSELGVQINVMGCTCLSQCLG 491

Query: 183 RAGMYDKMRSVMDFMQKRFFFP 204
           RA   D +  V +   +R   P
Sbjct: 492 RARRIDDLVKVFEVSLERGVKP 513



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 67/133 (50%)

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           +TY+ +I    +    +K  ++F++M   G+ P+ +TY +++  Y+K G + +V S+  +
Sbjct: 235 ITYSTIITCAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYER 294

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
              S    D   F  +   +G+AGD + +  +   MK     P+ + + T+++A    G 
Sbjct: 295 GRASGWKPDPIAFAVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGK 354

Query: 327 TEAAQNLENKMIA 339
              A++L  +M+ 
Sbjct: 355 PGLARSLFEEMVG 367



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/140 (19%), Positives = 66/140 (47%), Gaps = 1/140 (0%)

Query: 187 YDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           + K     ++++ +  FP   + YN+ +++       + +EE   +M   G++ ++ITY 
Sbjct: 179 WPKTYLFFNWIKTQNLFPMETIFYNVTMKSLRFGRQFQLIEELANEMISTGVELDNITYS 238

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           ++++   +  L  K      ++  + ++ D   ++ I+  Y + G VE++  L+   +  
Sbjct: 239 TIITCAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILDVYAKLGKVEEVLSLYERGRAS 298

Query: 306 HCVPDNITFATMIQAYNALG 325
              PD I FA + + +   G
Sbjct: 299 GWKPDPIAFAVLGKMFGEAG 318


>gi|302819880|ref|XP_002991609.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
 gi|300140642|gb|EFJ07363.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
          Length = 356

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 154/331 (46%), Gaps = 11/331 (3%)

Query: 3   MLGKCKQPEQASLLFE---VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +L + +  E A  LF+   +   D L+P    Y A+++AY Q+    +A+   + M +  
Sbjct: 5   ILSRARLIEDAEELFQWIKLQDWDKLRP----YNAMIAAYYQAKRPKDAWDVYHQMLA-E 59

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD  TY IL+    K      I+++  E+   G+  +  +YN +I  + K    +++
Sbjct: 60  GIDPDEVTYDILVSGSGK--NGYPIDRLFLEIKSRGVALTLRSYNVVICAFTKEGSIDKV 117

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E     M+      PD+F+ N++I+AY  S   E+  + ++     GV  DI T   L +
Sbjct: 118 EEVIREMIRQE-LRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQ 176

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + R+ M+ +   + + M      P    Y++++  +GKAG +      F +++  G +P
Sbjct: 177 MFSRSSMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRP 236

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N +TY SL+SA+   GL+ +      Q+E      D    N +I AY +AG V     L 
Sbjct: 237 NIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAGMVNDAANLL 296

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAA 330
             +  +   P+  ++A +++ +   G  E A
Sbjct: 297 HRLTAQGVCPNRASYAIIVEGFLHAGHVEEA 327



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 141/298 (47%), Gaps = 6/298 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPD 64
           + K+P+ A  ++  ML++G+ P    Y  LVS  G++G  +D  F  I         +  
Sbjct: 42  QAKRPKDAWDVYHQMLAEGIDPDEVTYDILVSGSGKNGYPIDRLFLEIKSRGVALTLR-- 99

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +Y+++I + TK    D +E+++ EM    +     ++N +I  Y  ++K E     FS
Sbjct: 100 --SYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFS 157

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M ++ G  PDI T  ++I  +  S   ++  + + E  +   + D    ++L   YG+A
Sbjct: 158 NM-KAAGVLPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKA 216

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G+      +   +Q     P +VTY  +I      G +E+  ++F +M+  G + +    
Sbjct: 217 GLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLL 276

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            +++ AY+KAG++    ++L ++    V  +   +  I+  +  AG VE+    + +M
Sbjct: 277 NTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVEEALAAYASM 334



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 111/221 (50%), Gaps = 6/221 (2%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK--SCTK 77
           M+   L+P +  + AL++AY  S   +      ++MK+ +   PD+ TY+ LI+  S + 
Sbjct: 124 MIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKA-AGVLPDIVTYTTLIQMFSRSS 182

Query: 78  FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
            H+ + IE +  EM     +     Y+ ++  YGKA    +    F  + +  G  P+I 
Sbjct: 183 MHK-EAIE-MFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRL-QLEGHRPNIV 239

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T  S+ISA+ + G +E+  K +++    G +AD+  LN +  +Y +AGM +   +++  +
Sbjct: 240 TYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRL 299

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             +   P   +Y I++E F  AGH+E+    +  M   G K
Sbjct: 300 TAQGVCPNRASYAIIVEGFLHAGHVEEALAAYASMSGAGFK 340



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 121/237 (51%), Gaps = 3/237 (1%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           YN +I  Y +AK+ ++    +  M+ + G  PD  T + ++S  G +G    +++ + E 
Sbjct: 33  YNAMIAAYYQAKRPKDAWDVYHQML-AEGIDPDEVTYDILVSGSGKNGY--PIDRLFLEI 89

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              GV   +++ N++  ++ + G  DK+  V+  M ++   P + ++N +I  +  +   
Sbjct: 90  KSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSRKP 149

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           E+  + F  MK  G+ P+ +TY +L+  +S++ +  +   +  ++  +    D   ++ +
Sbjct: 150 ERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYSLL 209

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +S YG+AG V     +F  ++     P+ +T+ ++I A+   G+ E ++   ++M A
Sbjct: 210 VSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEA 266



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 77/138 (55%), Gaps = 2/138 (1%)

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P  VTY+I++   GK G+   ++  F ++K RG+     +Y  ++ A++K G I KV+ +
Sbjct: 63  PDEVTYDILVSGSGKNGY--PIDRLFLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEV 120

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           +R++   ++  D   FN +I+AY  +   E+  ++F  MK    +PD +T+ T+IQ ++ 
Sbjct: 121 IREMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSR 180

Query: 324 LGMTEAAQNLENKMIAMK 341
             M + A  +  +M+  K
Sbjct: 181 SSMHKEAIEMFEEMVVNK 198


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 154/366 (42%), Gaps = 37/366 (10%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  QA  LF  M   G+ PS   YT L+  + +    + A+  +  M S   C 
Sbjct: 110 GLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMAS-RKCS 168

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P VY+Y  +I    K  + D   ++  EM   G +   VTYNT+I G    ++  E +  
Sbjct: 169 PTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDL 228

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT---- 178
            + MVE+G   PD  T  ++I     +  I++    +      G   D+ T  +L     
Sbjct: 229 LTVMVENGF-QPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLC 287

Query: 179 -----------------------------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
                                        +  GR   +D+   ++  M +R   P VVTY
Sbjct: 288 ILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTY 347

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
               +  G      +    F++M  +G++P+ + Y  LV  + KA  +   + ++R ++ 
Sbjct: 348 TAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQ 407

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
           S +  +   +N ++  + + G VE +GEL  TM  R   PD  T++T++     +G  +A
Sbjct: 408 SGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADA 467

Query: 330 AQNLEN 335
           A +  N
Sbjct: 468 AYSFLN 473



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 145/353 (41%), Gaps = 43/353 (12%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM---KSVS 59
           +L + ++ EQ  ++F  + S   KP+   Y  LV A  ++G +D+A STI +M   K V 
Sbjct: 9   LLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVP 68

Query: 60  D-----------CK----------------PDVYTYSILIKSCTKFHRFDLIEKILAEMS 92
           D           CK                PDV TY+ L+    K  R      +   M 
Sbjct: 69  DVFTYNVVIDTLCKARRISRAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSME 128

Query: 93  YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152
             GI  S VTY T+ID + K  +FE        M  S  C P +++  S+I+    +  +
Sbjct: 129 GAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMA-SRKCSPTVYSYCSIINGLCKNRKV 187

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           ++  + + E  L G K D  T N L           + + ++  M +  F P  +T+  +
Sbjct: 188 DQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTAL 247

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN--- 269
           IE       I++    F+ M  +G  P+ +T+  LV   SK  ++ K+   L  V N   
Sbjct: 248 IEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLV---SKLCILRKLRPALSVVRNYPA 304

Query: 270 --SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
               VIL TP F       G+    ++   L   M  R   P+ +T+    + 
Sbjct: 305 CPEAVILYTPIFR----ELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKG 353



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T N+++     +   E++   +        K +  +   L K+  R G  DK  S +  M
Sbjct: 2   TCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEM 61

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
            +    P V TYN+VI+T  KA  I +  E+F+ M     +P+ +TY +L+    K G +
Sbjct: 62  AREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRV 117

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            +  S+   +E + +      +  +I  + +    E    L   M  R C P   ++ ++
Sbjct: 118 AQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSI 177

Query: 318 I 318
           I
Sbjct: 178 I 178



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 2/157 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ +  ++A+ L + M   G+ P+V  YTA     G       A+     M      +P
Sbjct: 319 LGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLE-QGIEP 377

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  Y++L+    K  R D+ EK++  M   G+  + VTYNT++  + +  K E +    
Sbjct: 378 DMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELL 437

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
             MV S G  PD+ T +++++     G  +    + N
Sbjct: 438 HTMV-SRGRQPDVATWSTLVAGLFMVGQADAAYSFLN 473



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 4/131 (3%)

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VT N +++   +A   E++   F+++  +  KPN+++YC LV A  + G I K  S + +
Sbjct: 1   VTCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAE 60

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +    ++ D   +N +I    +A  + +  E F TM E    PD +T+ T++      G 
Sbjct: 61  MAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGR 116

Query: 327 TEAAQNLENKM 337
              A +L   M
Sbjct: 117 VAQACSLFGSM 127


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 165/385 (42%), Gaps = 54/385 (14%)

Query: 5   GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 60
           G CK    +    LF  M   G+ P++  Y  ++  +  SG    A   + +M  + +S 
Sbjct: 262 GLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKIS- 320

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+V TY+ LI +  K  +F    ++  EM   GI  + +TYN++IDG+ K  + +  E
Sbjct: 321 --PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M  + GC PD+FT  ++I  Y  +  I+   +  +E    G+ A+  T N L   
Sbjct: 379 DMFYLMA-TKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHG 437

Query: 181 YGRAG------------------------------------------MYDKM-RSVMDFM 197
           +   G                                          M+  M +S MD  
Sbjct: 438 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLD 497

Query: 198 QKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
               F    P V+TYNI+I      G   + EE +++M HRG+ P++ITY S++    K 
Sbjct: 498 ASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 557

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
             + +   +   + +     +   FN +I+ Y +AG V+   ELF  M  R  V D I +
Sbjct: 558 SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIY 617

Query: 315 ATMIQAYNALGMTEAAQNLENKMIA 339
            T+I  +  +G    A ++  +MI+
Sbjct: 618 ITLIYGFRKVGNINGALDIFQEMIS 642



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 17/323 (5%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+ L++ ML  G+ P+   Y +++  + +   LD A      M +   C PDV+T++ L
Sbjct: 341 EAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM-ATKGCSPDVFTFTTL 399

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D   ++L EM   G+  + VTYNT+I G+               M+ SG 
Sbjct: 400 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 459

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWY-------------NEFNLMGVKADIQTLNILT 178
           C PDI T N+++    ++G ++   + +             + FN  GV+ D+ T NIL 
Sbjct: 460 C-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFN--GVEPDVLTYNILI 516

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                 G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   
Sbjct: 517 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFS 576

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN +T+ +L++ Y KAG +     +  ++    ++ D   +  +I  + + G++    ++
Sbjct: 577 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDI 636

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
           F  M      PD IT   M+  +
Sbjct: 637 FQEMISSGVYPDTITIRNMLTGF 659



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 134/316 (42%), Gaps = 5/316 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P V  +T L+        + EA    + +     C+PDV T++ L+    +  R   
Sbjct: 146 GLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI-----CRPDVLTFTTLMNGLCREGRVVE 200

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +L  M   G++   +TY T +DG  K        +    M E     P++   +++I
Sbjct: 201 AVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAII 260

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 G        + E    G+  +I T N +   +  +G +   + ++  M +R   
Sbjct: 261 DGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKIS 320

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVTYN +I  F K G   +  E + +M  RG+ PN+ITY S++  + K   +   + +
Sbjct: 321 PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 380

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              +       D   F  +I  Y  A  ++   EL   M  R  V + +T+ T+I  +  
Sbjct: 381 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 440

Query: 324 LGMTEAAQNLENKMIA 339
           +G   AA +L  +MI+
Sbjct: 441 VGDLNAALDLSQQMIS 456



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 142/317 (44%), Gaps = 16/317 (5%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF----HRF 81
           +P V  +T L++   + G + EA + ++ M   +  +PD  TY   +    K        
Sbjct: 179 RPDVLTFTTLMNGLCREGRVVEAVALLDRMVE-NGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           +L+ K + E+S+  I+ + V Y+ IIDG  K  +  +  + F  M +  G  P+I T N 
Sbjct: 238 NLLRK-MEEISH--IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEM-QDKGIFPNIVTYNC 293

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           MI  +  SG     ++   E     +  ++ T N L  ++ + G + +   + D M  R 
Sbjct: 294 MIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG 353

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P  +TYN +I+ F K   ++  E+ F  M  +G  P+  T+ +L+  Y  A  I    
Sbjct: 354 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM 413

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +L ++    ++ +T  +N +I  +   GD+    +L   M      PD +T  T++   
Sbjct: 414 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 473

Query: 322 -------NALGMTEAAQ 331
                  +AL M +A Q
Sbjct: 474 CDNGKLKDALEMFKAMQ 490



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 151/378 (39%), Gaps = 48/378 (12%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  E A  LF  ML     PSV  +  L+ A  +    D   S    M+     + D+Y+
Sbjct: 60  KGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMER-KQIRCDIYS 118

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           ++ILIK      +         +++ LG+    VT+ T++ G     +  E    F  + 
Sbjct: 119 FTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI- 177

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD----------------- 170
               C PD+ T  ++++     G + +     +     G++ D                 
Sbjct: 178 ----CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDT 233

Query: 171 IQTLNILTK-------------------SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +  LN+L K                      + G +    ++   MQ +  FP +VTYN 
Sbjct: 234 VSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNC 293

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I  F  +G     +   ++M  R + PN +TY +L++A+ K G   +   +  ++    
Sbjct: 294 MIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG 353

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           +I +T  +N +I  + +   ++   ++F  M  + C PD  TF T+I  Y        A+
Sbjct: 354 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYC------GAK 407

Query: 332 NLENKMIAMKENSGKKLI 349
            +++ M  + E   + L+
Sbjct: 408 RIDDGMELLHEMPRRGLV 425


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 165/385 (42%), Gaps = 54/385 (14%)

Query: 5   GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 60
           G CK    +    LF  M   G+ P++  Y  ++  +  SG    A   + +M  + +S 
Sbjct: 262 GLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKIS- 320

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+V TY+ LI +  K  +F    ++  EM   GI  + +TYN++IDG+ K  + +  E
Sbjct: 321 --PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             F  M  + GC PD+FT  ++I  Y  +  I+   +  +E    G+ A+  T N L   
Sbjct: 379 DMFYLMA-TKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHG 437

Query: 181 YGRAG------------------------------------------MYDKM-RSVMDFM 197
           +   G                                          M+  M +S MD  
Sbjct: 438 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLD 497

Query: 198 QKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
               F    P V+TYNI+I      G   + EE +++M HRG+ P++ITY S++    K 
Sbjct: 498 ASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 557

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
             + +   +   + +     +   FN +I+ Y +AG V+   ELF  M  R  V D I +
Sbjct: 558 SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIY 617

Query: 315 ATMIQAYNALGMTEAAQNLENKMIA 339
            T+I  +  +G    A ++  +MI+
Sbjct: 618 ITLIYGFRKVGNINGALDIFQEMIS 642



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 17/323 (5%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+ L++ ML  G+ P+   Y +++  + +   LD A      M +   C PDV+T++ L
Sbjct: 341 EAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM-ATKGCSPDVFTFTTL 399

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D   ++L EM   G+  + VTYNT+I G+               M+ SG 
Sbjct: 400 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 459

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWY-------------NEFNLMGVKADIQTLNILT 178
           C PDI T N+++    ++G ++   + +             + FN  GV+ D+ T NIL 
Sbjct: 460 C-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFN--GVEPDVLTYNILI 516

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                 G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   
Sbjct: 517 CGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFS 576

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN +T+ +L++ Y KAG +     +  ++    ++ D   +  +I  + + G++    ++
Sbjct: 577 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDI 636

Query: 299 FLTMKERHCVPDNITFATMIQAY 321
           F  M      PD IT   M+  +
Sbjct: 637 FQEMISSGVYPDTITIRNMLTGF 659



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 134/316 (42%), Gaps = 5/316 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P V  +T L+        + EA    + +     C+PDV T++ L+    +  R   
Sbjct: 146 GLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI-----CRPDVLTFTTLMNGLCREGRVVE 200

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +L  M   G++   +TY T +DG  K        +    M E     P++   +++I
Sbjct: 201 AVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAII 260

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
                 G        + E    G+  +I T N +   +  +G +   + ++  M +R   
Sbjct: 261 DGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKIS 320

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVTYN +I  F K G   +  E + +M  RG+ PN+ITY S++  + K   +   + +
Sbjct: 321 PNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDM 380

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              +       D   F  +I  Y  A  ++   EL   M  R  V + +T+ T+I  +  
Sbjct: 381 FYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCL 440

Query: 324 LGMTEAAQNLENKMIA 339
           +G   AA +L  +MI+
Sbjct: 441 VGDLNAALDLSQQMIS 456



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 142/317 (44%), Gaps = 16/317 (5%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF----HRF 81
           +P V  +T L++   + G + EA + ++ M   +  +PD  TY   +    K        
Sbjct: 179 RPDVLTFTTLMNGLCREGRVVEAVALLDRMVE-NGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           +L+ K + E+S+  I+ + V Y+ IIDG  K  +  +  + F  M +  G  P+I T N 
Sbjct: 238 NLLRK-MEEISH--IKPNVVIYSAIIDGLCKDGRHSDSHNLFIEM-QDKGIFPNIVTYNC 293

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           MI  +  SG     ++   E     +  ++ T N L  ++ + G + +   + D M  R 
Sbjct: 294 MIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG 353

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P  +TYN +I+ F K   ++  E+ F  M  +G  P+  T+ +L+  Y  A  I    
Sbjct: 354 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGM 413

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +L ++    ++ +T  +N +I  +   GD+    +L   M      PD +T  T++   
Sbjct: 414 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 473

Query: 322 -------NALGMTEAAQ 331
                  +AL M +A Q
Sbjct: 474 CDNGKLKDALEMFKAMQ 490



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 151/378 (39%), Gaps = 48/378 (12%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  E A  LF  ML     PSV  +  L+ A  +    D   S    M+     + D+Y+
Sbjct: 60  KGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMER-KQIRCDIYS 118

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           ++ILIK      +         +++ LG+    VT+ T++ G     +  E    F  + 
Sbjct: 119 FTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI- 177

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD----------------- 170
               C PD+ T  ++++     G + +     +     G++ D                 
Sbjct: 178 ----CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDT 233

Query: 171 IQTLNILTK-------------------SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +  LN+L K                      + G +    ++   MQ +  FP +VTYN 
Sbjct: 234 VSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNC 293

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I  F  +G     +   ++M  R + PN +TY +L++A+ K G   +   +  ++    
Sbjct: 294 MIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG 353

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           +I +T  +N +I  + +   ++   ++F  M  + C PD  TF T+I  Y        A+
Sbjct: 354 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYC------GAK 407

Query: 332 NLENKMIAMKENSGKKLI 349
            +++ M  + E   + L+
Sbjct: 408 RIDDGMELLHEMPRRGLV 425



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 13/255 (5%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+ +    L   M   GL  +   Y  L+  +   G L+ A      M S   C PD+ T
Sbjct: 407 KRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVC-PDIVT 465

Query: 68  YSILIKS-CTKFHRFDLIE----------KILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            + L+   C      D +E           + A   + G+E   +TYN +I G     KF
Sbjct: 466 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKF 525

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
            E E  +  M   G   PD  T +SMI        +++  + +          ++ T N 
Sbjct: 526 LEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNT 584

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   Y +AG  D    +   M +R      + Y  +I  F K G+I    + F++M   G
Sbjct: 585 LINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSG 644

Query: 237 MKPNSITYCSLVSAY 251
           + P++IT  ++++ +
Sbjct: 645 VYPDTITIRNMLTGF 659


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 154/324 (47%), Gaps = 4/324 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + E+M ++G++ +V  YT LV +   +  + +  +  N+MK+ ++   DVY Y+ +I + 
Sbjct: 234 ILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKA-NNVVGDVYLYTAVINAY 292

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHP 134
            +        K+L E    G+E +  TY  +I+G+ K  + E  E   + M   G G + 
Sbjct: 293 CRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQ 352

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
            IF  N+MI  Y   G ++   K       MGV+ DI T N L     R    D+ ++++
Sbjct: 353 IIF--NTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLL 410

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             M +    P  VTY  +I    K G + +    F++M  +G  P+ +TY  ++  Y+K 
Sbjct: 411 HIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKK 470

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G I + +   +++E    + D   +  ++  +   G V+   +LF  MK+R   P+ + +
Sbjct: 471 GSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAY 530

Query: 315 ATMIQAYNALGMTEAAQNLENKMI 338
             +I      G +EAA  L + M+
Sbjct: 531 TALISGLAKEGRSEAAFQLYDDML 554



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 149/306 (48%), Gaps = 8/306 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M ++ +   V +YTA+++AY ++G +  A   +++    +  +P+  TY +LI   
Sbjct: 269 LFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVG-NGVEPNERTYGVLINGF 327

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  + +  E +LA+M   G+  + + +NT+IDGY +    ++     +AM E  G   D
Sbjct: 328 CKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAM-EKMGVELD 386

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I+T N++         +++ +   +    MGV  +  T   L   + + G   + R +  
Sbjct: 387 IYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFR 446

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M ++   P+VVTYN++I+ + K G I + E + K+M+ +G  P+  TY SLV  +   G
Sbjct: 447 EMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNG 506

Query: 256 LIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
              KVD  L+  E        P    +  +IS   + G  E   +L+  M +   +PD+ 
Sbjct: 507 ---KVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDS 563

Query: 313 TFATMI 318
            ++ ++
Sbjct: 564 LYSALV 569



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 139/305 (45%), Gaps = 2/305 (0%)

Query: 33  TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 92
           + +V    +SG +D+A   ++DM        +   Y+ L+    +      +++IL  M 
Sbjct: 181 SVVVDGLCKSGRVDDARRLLDDMPR-HGVSLNALCYNSLLDCYVRQKDDGRVQEILEIME 239

Query: 93  YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152
             GIE +  TY  ++D    A+   ++E+ F+ M ++     D++   ++I+AY  +GN+
Sbjct: 240 NEGIEATVGTYTILVDSLSTARDISKVEALFNEM-KANNVVGDVYLYTAVINAYCRAGNM 298

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
            +  K  +E    GV+ + +T  +L   + + G  +    ++  MQ +      + +N +
Sbjct: 299 RRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTM 358

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           I+ + + G ++   +    M+  G++ +  TY +L     +   + +  ++L  +    V
Sbjct: 359 IDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGV 418

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
           + +   +  +IS + + GD+ +   LF  M E+   P  +T+  MI  Y   G    A+ 
Sbjct: 419 VPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAER 478

Query: 333 LENKM 337
              +M
Sbjct: 479 FRKEM 483



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 2/213 (0%)

Query: 130 GGCHPDIFTLNSMISAYG--NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           G C   +  L + +   G   SG ++   +  ++    GV  +    N L   Y R    
Sbjct: 169 GSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDD 228

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            +++ +++ M+      TV TY I++++   A  I K+E  F +MK   +  +   Y ++
Sbjct: 229 GRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAV 288

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++AY +AG + +   +L +   + V  +   +  +I+ + + G +E    L   M+ +  
Sbjct: 289 INAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGV 348

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             + I F TMI  Y   GM + A  ++  M  M
Sbjct: 349 GLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKM 381



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 115/273 (42%), Gaps = 38/273 (13%)

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S+++    K  R D   ++L +M   G+  +A+ YN+++D Y + K              
Sbjct: 181 SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQK-------------- 226

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
                              + G +++ +E   NE    G++A + T  IL  S   A   
Sbjct: 227 -------------------DDGRVQEILEIMENE----GIEATVGTYTILVDSLSTARDI 263

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            K+ ++ + M+       V  Y  VI  + +AG++ +  +   +    G++PN  TY  L
Sbjct: 264 SKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVL 323

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++ + K G +   + +L  ++   V L+   FN +I  Y + G V+   ++   M++   
Sbjct: 324 INGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGV 383

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             D  T+ T+      +   + A+ L + MI M
Sbjct: 384 ELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEM 416


>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
          Length = 792

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 148/334 (44%), Gaps = 2/334 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++  +A  L++ M   G+KPS+  Y +L+  Y + G +DEA    ++M       P
Sbjct: 405 LCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPD-KGFPP 463

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TY+ L+K   K   FD    +L EM   G+ C   TYN +I+G     +  E++   
Sbjct: 464 NEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEML 523

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              + S G  P   T NS+I+ +  +G +      Y +    G+  +I T       Y R
Sbjct: 524 KRFL-SEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCR 582

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               D    ++ ++++    P +  YN  I+TF K G++ +   +   +   G+ P+   
Sbjct: 583 TNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTV 642

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S V+ Y    ++ +       +    V+ DT  +  +I  + + G+V    EL+  M 
Sbjct: 643 YNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMM 702

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             H +PD+ TF  +       G  + A+ L + M
Sbjct: 703 ANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDM 736



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 153/381 (40%), Gaps = 46/381 (12%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF--------- 49
           M+M G C   E  +A  LF+ ++SDG+ P+   Y  L+      G+ DE +         
Sbjct: 296 MLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQMIEQ 355

Query: 50  -----------------------STINDMKSVSDCK-PDVYTYSILIKSCTKFHRFDLIE 85
                                    I  +K V D   PDV+TY  LI    K  +     
Sbjct: 356 GLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGVPDVFTYGCLIHWLCKHQKLHEAV 415

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +  +M   G++ S VTY++++ GY +  + +E    +S M + G   P+  T  +++  
Sbjct: 416 NLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKG-FPPNEVTYTTLMKG 474

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV-MDFMQKRF--- 201
           Y      +      NE    GV     T NIL       G+Y   R   +D M KRF   
Sbjct: 475 YIKKKAFDNAYALLNEMRQNGVSCGDYTYNILIN-----GLYMVNRVCEVDEMLKRFLSE 529

Query: 202 -FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
            F PT +TYN +I  F KAG +      +++M+ +G+ PN +TY S +  Y +       
Sbjct: 530 GFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLA 589

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +L  V    +  D   +N  I  + + G++ +     + + +    PD   + + +  
Sbjct: 590 VKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTG 649

Query: 321 YNALGMTEAAQNLENKMIAMK 341
           Y  L M   A      MI  +
Sbjct: 650 YKNLKMMAEASKFYYSMIKQR 670



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 141/315 (44%), Gaps = 5/315 (1%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVY 66
           +  E   L  +++L+ G K  V + T L+  Y  +G + +A    +++  VSD   P   
Sbjct: 270 RMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLNGEVGKALDLFDEV--VSDGVTPTNV 327

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY +LIK C      D   K+  +M   G+  S   +N +I G  + K++++       +
Sbjct: 328 TYGVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLV 387

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           V++G   PD+FT   +I        + +    +++    GVK  I T + L   Y   G 
Sbjct: 388 VDTG--VPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGR 445

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D+   +   M  + F P  VTY  +++ + K    +       +M+  G+     TY  
Sbjct: 446 MDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNI 505

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++       + +VD +L++  +   +  T  +N II+ + +AG +     ++  M+++ 
Sbjct: 506 LINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKG 565

Query: 307 CVPDNITFATMIQAY 321
             P+ +T+ + I  Y
Sbjct: 566 ITPNIVTYTSFIDGY 580



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 141/325 (43%), Gaps = 2/325 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  LF+ M   G      +Y  ++ A  + G+  +A    ++M   +  KPD   Y+I I
Sbjct: 169 ALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAG-AGVKPDERVYAITI 227

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K    D   ++L +M   G E   +TY++++D   K ++ +E       M+ + G 
Sbjct: 228 SGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVRRMDEALRLKDQMLLATGK 287

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
             D+     ++  Y  +G + K    ++E    GV     T  +L K     GM D+   
Sbjct: 288 KMDVVLATMLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYK 347

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +   M ++   P+   +N+VI+   +    +      K +   G+ P+  TY  L+    
Sbjct: 348 LCRQMIEQGLLPSTYEFNLVIKGLLRDKRWKDAIGLLKLVVDTGV-PDVFTYGCLIHWLC 406

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           K   + +  ++  +++ + V      ++ ++  Y + G +++  +L+  M ++   P+ +
Sbjct: 407 KHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEV 466

Query: 313 TFATMIQAYNALGMTEAAQNLENKM 337
           T+ T+++ Y      + A  L N+M
Sbjct: 467 TYTTLMKGYIKKKAFDNAYALLNEM 491



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 112/267 (41%), Gaps = 2/267 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + +  LS+G  P+   Y ++++ + ++G++  AF     M+      P++ TY+  I   
Sbjct: 522 MLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRK-KGITPNIVTYTSFIDGY 580

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            + +  DL  K+L  +   GI+     YN  ID + K          F  ++   G  PD
Sbjct: 581 CRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSR-ALHFLVLLLKDGLTPD 639

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +   NS ++ Y N   + +  K+Y       V AD +    L   + + G       +  
Sbjct: 640 VTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYS 699

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M      P   T+  +     ++G I+  +     M+   + PN +TY  L++A  + G
Sbjct: 700 EMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDG 759

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCI 282
            + +   +  ++ +S V+ D   ++ +
Sbjct: 760 KLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 10/221 (4%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +S MV + G  PD  +   ++       +       ++E    G  AD +  +++ ++  
Sbjct: 138 YSRMV-TRGVVPDAKSRTDLLVTTALGASAADALTLFDEMRGKGCYADAKMYDVVIRACV 196

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R GM+     + D M      P    Y I I    K    ++  +   KM+  G +P  +
Sbjct: 197 RGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWEL 256

Query: 243 TYCSLVSAYSKA-----GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           TY S+V    K       L +K   +L   +  DV+L T     ++  Y   G+V K  +
Sbjct: 257 TYSSVVDVLVKVRRMDEALRLKDQMLLATGKKMDVVLAT----MLMHGYCLNGEVGKALD 312

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           LF  +      P N+T+  +I+  +A GMT+    L  +MI
Sbjct: 313 LFDEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQMI 353



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 39/211 (18%)

Query: 7   CKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CKQ   +  L    ++L DGL P V VY + V+ Y    ++ EA                
Sbjct: 616 CKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEA---------------- 659

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
                      +KF+   + ++++A+            Y T+IDG+ K          +S
Sbjct: 660 -----------SKFYYSMIKQRVVADTE---------IYTTLIDGFSKVGNVAFALELYS 699

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+ +    PD  T  ++      SG+I+  ++  ++   + V  +I T N+L  +  R 
Sbjct: 700 EMM-ANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRD 758

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           G   +   + D M      P   TY+I+  T
Sbjct: 759 GKLQEAFQLHDEMLSSGVVPDDTTYDILPRT 789


>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 685

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 138/282 (48%), Gaps = 14/282 (4%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY------GKAKKFE 117
           +V  Y++ +K   K    D +EK+  EM   G+    VT++TII          KA ++ 
Sbjct: 161 EVILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNKAVEWF 220

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E  SSF       GC PD  T ++MI AYG +GNI+   + Y+       + D  T + L
Sbjct: 221 EKMSSF-------GCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTL 273

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            K YG AG YD   +V   M+     P +V YN +++  G+A    + +  + +M + G 
Sbjct: 274 IKMYGLAGNYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGF 333

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            PN +TY SL+ AY +         + ++++   + ++T  +N +++     G   +  E
Sbjct: 334 SPNWVTYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFE 393

Query: 298 LFLTMK-ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +F  MK    C+ D+ TF+++I  Y+  G    A+ + N+MI
Sbjct: 394 IFEDMKTSATCLCDSWTFSSLITIYSCTGNVSEAERMLNEMI 435



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 131/293 (44%), Gaps = 4/293 (1%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C  P +A   FE M S G +P    Y+A++ AYG++G +D A   + D       + D  
Sbjct: 210 CSLPNKAVEWFEKMSSFGCEPDDVTYSAMIDAYGRAGNIDMALR-LYDRARTEKWRLDTV 268

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           T+S LIK       +D    +  EM  LG++ + V YNT++D  G+AK+  + +S ++ M
Sbjct: 269 TFSTLIKMYGLAGNYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEM 328

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
             + G  P+  T  S++ AYG     E     Y E    G++ +    N L       G+
Sbjct: 329 T-NNGFSPNWVTYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGL 387

Query: 187 YDKMRSVMDFMQKRFF-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            ++   + + M+          T++ +I  +   G++ + E    +M   G +P      
Sbjct: 388 ANEAFEIFEDMKTSATCLCDSWTFSSLITIYSCTGNVSEAERMLNEMIESGSQPTIFVLT 447

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           SLV  Y K G    V     Q+ +  +  D  F  C+++   Q    E++G+L
Sbjct: 448 SLVQCYGKVGRTDDVVKTFNQLLDLGISPDDRFCGCLLNVMTQTPK-EELGKL 499



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 13/185 (7%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           +G+ K+P QA  ++  M ++G  P+   Y +L+ AYG+    ++A     +MK     + 
Sbjct: 312 MGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGRYSEDALFVYKEMKE-KGMEM 370

Query: 64  DVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           + + Y+ L+  C         F++ E +    + L   C + T++++I  Y       E 
Sbjct: 371 NTHLYNTLLAMCADLGLANEAFEIFEDMKTSATCL---CDSWTFSSLITIYSCTGNVSEA 427

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ----TLN 175
           E   + M+ESG   P IF L S++  YG  G  + + K +N+   +G+  D +     LN
Sbjct: 428 ERMLNEMIESGS-QPTIFVLTSLVQCYGKVGRTDDVVKTFNQLLDLGISPDDRFCGCLLN 486

Query: 176 ILTKS 180
           ++T++
Sbjct: 487 VMTQT 491



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 36/221 (16%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    + A  L++   ++  +     ++ L+  YG +G  D   +   +MK V   KP+
Sbjct: 243 GRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGNYDGCLNVYQEMK-VLGVKPN 301

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-------FE 117
           +  Y+ L+ +  +  R    + I  EM+  G   + VTY +++  YG+ +        ++
Sbjct: 302 MVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGRYSEDALFVYK 361

Query: 118 EMESS----------------------------FSAMVESGGCHPDIFTLNSMISAYGNS 149
           EM+                              F  M  S  C  D +T +S+I+ Y  +
Sbjct: 362 EMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSATCLCDSWTFSSLITIYSCT 421

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GN+ + E+  NE    G +  I  L  L + YG+ G  D +
Sbjct: 422 GNVSEAERMLNEMIESGSQPTIFVLTSLVQCYGKVGRTDDV 462


>gi|449469755|ref|XP_004152584.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
           chloroplastic-like [Cucumis sativus]
          Length = 708

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 151/299 (50%), Gaps = 1/299 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA +L   M   G+  +V +Y  ++ A+ +S  ++EA     +MKS    KP   +++IL
Sbjct: 347 QALILQLEMEKKGVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKS-KGVKPTSASFNIL 405

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           + + ++  + +++EK+L EM  +G+E +  +Y  +I  YG+ KK  +M +     ++  G
Sbjct: 406 MNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNG 465

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P   +  ++I AY  SG  EK    +      G+K  I+T   L  ++ RAG    + 
Sbjct: 466 IRPTSHSYTALIHAYSVSGWHEKAYSAFENMLREGLKPSIETYTTLLDAFRRAGDTVSLM 525

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +   M +     T VT+N +++ F K GH  +  +   +    G++P  +TY  L++AY
Sbjct: 526 KIWKLMIREKVLGTRVTFNTLLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAY 585

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           ++ G  +K+  +L+++   D+  D+  ++ +I A+ +  D ++       M +   VPD
Sbjct: 586 ARGGQHLKLPQLLQEMAARDLKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPD 644



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 165/391 (42%), Gaps = 74/391 (18%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+    E+  +LF+ +        V VY + +S        D+A      M++ ++  
Sbjct: 232 LLGRAGMGEKIMVLFKNLPLKKEFQDVHVYNSAISGLMVCKRYDDACKVYEAMET-NNVN 290

Query: 63  PDVYTYSILIKSCTKFHR-----FDLIEK------------------------------- 86
           PD  T SI+I    K  R     +D  EK                               
Sbjct: 291 PDHVTCSIMITVMRKIGRSAKDSWDYFEKMNQKGVKWSSEVLGALIKSFCDEGLKSQALI 350

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  EM   G+  + + YNTI+D + K+ + EE E  F+ M +S G  P   + N +++AY
Sbjct: 351 LQLEMEKKGVASNVIMYNTIMDAFSKSNQIEEAEGVFAEM-KSKGVKPTSASFNILMNAY 409

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG-MYDKMRSVMDFMQKRFFFPT 205
                 E +EK   E   MG++ ++++   L  +YGR   M D        M+K    PT
Sbjct: 410 SRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPT 469

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDS 262
             +Y  +I  +  +G  EK    F+ M   G+KP+  TY +L+ A+ +AG    +MK+  
Sbjct: 470 SHSYTALIHAYSVSGWHEKAYSAFENMLREGLKPSIETYTTLLDAFRRAGDTVSLMKIWK 529

Query: 263 ILRQ-----------------------VENSDVILD------TP---FFNCIISAYGQAG 290
           ++ +                       VE  DVI +       P    +N +++AY + G
Sbjct: 530 LMIREKVLGTRVTFNTLLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGG 589

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAY 321
              K+ +L   M  R   PD++T++TMI A+
Sbjct: 590 QHLKLPQLLQEMAARDLKPDSVTYSTMIYAF 620



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 5/231 (2%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW--YN 160
           YN+ I G    K++++    + AM E+   +PD  T + MI+     G   K + W  + 
Sbjct: 261 YNSAISGLMVCKRYDDACKVYEAM-ETNNVNPDHVTCSIMITVMRKIGRSAK-DSWDYFE 318

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           + N  GVK   + L  L KS+   G+  +   +   M+K+     V+ YN +++ F K+ 
Sbjct: 319 KMNQKGVKWSSEVLGALIKSFCDEGLKSQALILQLEMEKKGVASNVIMYNTIMDAFSKSN 378

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            IE+ E  F +MK +G+KP S ++  L++AYS+      V+ +L ++++  +  +   + 
Sbjct: 379 QIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYT 438

Query: 281 CIISAYGQAGDVEKM-GELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           C+ISAYG+   +  M  + FL MK+    P + ++  +I AY+  G  E A
Sbjct: 439 CLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKA 489



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 11/246 (4%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYG-QSGLLDEAFSTINDMKSVSDCKPDVYT 67
           QPE    L   M   GL+P+V  YT L+SAYG Q  + D A      MK  +  +P  ++
Sbjct: 414 QPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKK-NGIRPTSHS 472

Query: 68  YSILIK--SCTKFHR--FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           Y+ LI   S + +H   +   E +L E    G++ S  TY T++D + +A     +   +
Sbjct: 473 YTALIHAYSVSGWHEKAYSAFENMLRE----GLKPSIETYTTLLDAFRRAGDTVSLMKIW 528

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+        + T N+++  +   G+  +     +EF+ +G++  + T N+L  +Y R
Sbjct: 529 KLMIREKVLGTRV-TFNTLLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYAR 587

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G + K+  ++  M  R   P  VTY+ +I  F +    ++   Y KKM   G  P+  +
Sbjct: 588 GGQHLKLPQLLQEMAARDLKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKS 647

Query: 244 YCSLVS 249
           Y  L S
Sbjct: 648 YQKLKS 653



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 86/197 (43%), Gaps = 4/197 (2%)

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
           G +G  EK+   +    L     D+   N           YD    V + M+     P  
Sbjct: 234 GRAGMGEKIMVLFKNLPLKKEFQDVHVYNSAISGLMVCKRYDDACKVYEAMETNNVNPDH 293

Query: 207 VTYNIVIETFGKAGHIEK-MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           VT +I+I    K G   K   +YF+KM  +G+K +S    +L+ ++   GL  +   +  
Sbjct: 294 VTCSIMITVMRKIGRSAKDSWDYFEKMNQKGVKWSSEVLGALIKSFCDEGLKSQALILQL 353

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++E   V  +   +N I+ A+ ++  +E+   +F  MK +   P + +F  ++ AY+   
Sbjct: 354 EMEKKGVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRM 413

Query: 326 MTEAAQNLENKMIAMKE 342
             E  + L   ++ MK+
Sbjct: 414 QPEIVEKL---LVEMKD 427


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 158/360 (43%), Gaps = 42/360 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++E M   G K  +  Y  L+ A  ++G++D+AF    DMK    C PD YTY+ILI+  
Sbjct: 208 VYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ-KHCVPDAYTYTILIRMS 266

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R         EM   G   + + +NTII+  GK K  +++    S MVE+  C P+
Sbjct: 267 GKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVEN-DCQPN 325

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNE-FNLMGVKADIQTLNILTKSYGRAGMYDKMRSV- 193
            FT +  +      G + ++    NE  ++     +    + L KS  ++G   +  +V 
Sbjct: 326 QFTYSITLDILATEGQLHRL----NEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVF 381

Query: 194 ----------------------------------MDFMQKRFFFPTVVTYNIVIETFGKA 219
                                             +  M ++     V  YN+V    GK 
Sbjct: 382 CRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKL 441

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
             +  +   F KMK  G+ P+  TY  ++S+Y + GL+ K   +   +E S    D   +
Sbjct: 442 KQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTY 501

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I+  G+ GD+++   LF  M+E+   PD  T++ +I+ +      E A +L ++MI+
Sbjct: 502 NSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMIS 561



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 160/346 (46%), Gaps = 32/346 (9%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M GK  +  +    F+ M+S G   ++  +  ++ A G++ ++D+    ++ M   +DC+
Sbjct: 265 MSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVE-NDCQ 323

Query: 63  PDVYTYSI---LIKSCTKFHRFDLIEKILAEM------SYLGIEC-----SAVTYNTIID 108
           P+ +TYSI   ++ +  + HR + +  I +        SYL         ++  +N    
Sbjct: 324 PNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCR 383

Query: 109 GYGKAKK-----FEEM-------ESSFSA-----MVESGGCHPDIFTLNSMISAYGNSGN 151
            +   +K     F  M       E +  A     M+   G   D+   N + SA G    
Sbjct: 384 MWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQ 443

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +  +   +++    G+  D+ T NI+  SYGR G+ DK   + + M+     P VVTYN 
Sbjct: 444 VSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNS 503

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I   GK G +++    FK+M+ +G  P+  TY  L+  + K+  +    S+  ++ +  
Sbjct: 504 LINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEG 563

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
              +   +N ++    + G  E+  +L+ TMK++  +PD+IT++ +
Sbjct: 564 CTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 609



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV  Y+++  +  K  +   I  +  +M   GI     TYN +I  YG+    ++    F
Sbjct: 427 DVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELF 486

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E+  C PD+ T NS+I+  G  G++++    + E    G   D+ T +IL + +G+
Sbjct: 487 EVM-EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGK 545

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +   +   S+ D M      P +VTYNI+++   + G  E+  + ++ MK +G+ P+SIT
Sbjct: 546 SNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSIT 605

Query: 244 YCSLVSAYSKAGLIMKVDSILR 265
           Y  L    S++   +++    R
Sbjct: 606 YSILERLESRSQRTVRIRKPTR 627



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/300 (20%), Positives = 119/300 (39%), Gaps = 33/300 (11%)

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YTY  ++++  +        ++  EM   G +     YN ++D   KA   ++    F  
Sbjct: 187 YTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFED 246

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M +   C PD +T   +I   G +G   K   +++E    G   ++   N + ++ G+  
Sbjct: 247 MKQK-HCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNK 305

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNI--------------------------------VI 213
           M DK+  V+  M +    P   TY+I                                ++
Sbjct: 306 MVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMNRSIYSYLV 365

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
           ++  K+GH  +    F +M +   K +   + S++     A   ++   +L  +    ++
Sbjct: 366 KSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAIDLLHMMPEKGIV 425

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   +N + SA G+   V  +  LF  MK    +PD  T+  MI +Y  +G+ + A  L
Sbjct: 426 TDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASEL 485



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 99/234 (42%), Gaps = 4/234 (1%)

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           + L   S  G+  S  TY  I+  + ++++  +    +  M    G   DIF  N ++ A
Sbjct: 172 RCLELASKWGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEM-RRKGYKLDIFAYNMLLDA 230

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
              +G +++  + + +        D  T  IL +  G+AG   K  S  D M  +     
Sbjct: 231 LAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLN 290

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           ++ +N +IE  GK   ++K+     KM     +PN  TY   +   +  G + +++ +L 
Sbjct: 291 LIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVL- 349

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
             +     ++   ++ ++ +  ++G   +   +F  M   H   D   F +M++
Sbjct: 350 --DICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLE 401



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 11/228 (4%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN--- 151
           G    A +YN I+    + +          A +E  G   +I T+N ++   G       
Sbjct: 113 GFRHDAFSYNRILALLFRTRAGPSEALRLVADMERDGVAGNISTINLLVGMGGGGVEMER 172

Query: 152 -IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            +E   KW       G++    T   + +++ R+    K   V + M+++ +   +  YN
Sbjct: 173 CLELASKW-------GLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYN 225

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           ++++   KAG +++  + F+ MK +   P++ TY  L+    KAG   K  S   ++ + 
Sbjct: 226 MLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSK 285

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
             +L+   FN II A G+   V+K+  +   M E  C P+  T++  +
Sbjct: 286 GCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITL 333



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 63/131 (48%)

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  +++   ++  + K  + +++M+ +G K +   Y  L+ A +KAG++ +   +   +
Sbjct: 188 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 247

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           +    + D   +  +I   G+AG   K    F  M  + CV + I F T+I+A     M 
Sbjct: 248 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMV 307

Query: 328 EAAQNLENKMI 338
           +    + +KM+
Sbjct: 308 DKVIFVLSKMV 318



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           RAG  + +R V D M++      + T N+++   G    +E+  E   K    G++ +  
Sbjct: 132 RAGPSEALRLVAD-MERDGVAGNISTINLLVGMGGGGVEMERCLELASKW---GLRLSGY 187

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  +V A+ ++  + K   +  ++      LD   +N ++ A  +AG V++  ++F  M
Sbjct: 188 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 247

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           K++HCVPD  T+  +I+     G T    +  ++M++
Sbjct: 248 KQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVS 284


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 158/349 (45%), Gaps = 10/349 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  +A  +F+ M   G  P    Y  L+  Y ++  + +AF     M+      
Sbjct: 482 GLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER-EPIS 540

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  Y+ LI    K  R   +  +L EM   G+  + VTY  +IDG+ K    ++  SS
Sbjct: 541 PSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 600

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +  M E+G    +I   ++M+S     G I++      +    G   D +      KS  
Sbjct: 601 YFEMTENG-LSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF---LKSDI 656

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R     K+   +D   K F  P  + YNI I    K G ++    +F  +  +G  P++ 
Sbjct: 657 RYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNF 716

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TYC+L+  YS AG + +   +  ++    ++ +   +N +I+   ++ +V++   LF  +
Sbjct: 717 TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 776

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
            ++   P+ +T+ T+I  Y  +G  +AA  L++KMI   E      IQC
Sbjct: 777 HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMI---EEGISPSIQC 822



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 149/355 (41%), Gaps = 36/355 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  + + M   G+  +V  YT L+  Y +   +DEA   +  M+  +   PD   Y +
Sbjct: 244 EAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGV 303

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  + D   ++L EM  LG++ +    N++I+GY K  +  E E   + MV+  
Sbjct: 304 LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-W 362

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD ++ N+++  Y   G+  +     ++    G++  + T N L K   R G +D  
Sbjct: 363 NLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDA 422

Query: 191 RSVMDFMQKRFFFP-----------------------------------TVVTYNIVIET 215
             +   M KR   P                                   + +T+N +I  
Sbjct: 423 LQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 482

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K G + + EE F KMK  G  P+ ITY +L+  Y KA  + +   +   +E   +   
Sbjct: 483 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPS 542

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              +N +IS   ++  + ++ +L   M  R   P+ +T+  +I  +   GM + A
Sbjct: 543 IEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKA 597



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 147/353 (41%), Gaps = 36/353 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  +++ M+  G+ P V + + +V+A+ + G +DEA   +  M+++   +P
Sbjct: 167 LVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLG-VEP 225

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY  LI         +  + +L  MS  G+  + VTY  +I GY K  K +E E   
Sbjct: 226 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 285

Query: 124 SAMVESGGCHPD-----------------------------------IFTLNSMISAYGN 148
             M E     PD                                   +F  NS+I+ Y  
Sbjct: 286 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 345

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G I + E          +K D  + N L   Y R G   +  ++ D M +    PTV+T
Sbjct: 346 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 405

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +++   + G  +   + +  M  RG+ P+ + Y +L+    K        ++ + + 
Sbjct: 406 YNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDIL 465

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
                     FN +IS   + G + +  E+F  MK+  C PD IT+ T+I  Y
Sbjct: 466 ARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGY 518



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 141/312 (45%), Gaps = 4/312 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+ E  +A  +   M+   LKP    Y  L+  Y + G   EAF+  + M      +
Sbjct: 342 GYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ-EGIE 400

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V TY+ L+K   +   FD   +I   M   G+    V Y+T++DG  K + FE   + 
Sbjct: 401 PTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTL 460

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +  ++  G     I T N+MIS     G + + E+ +++   +G   D  T   L   Y 
Sbjct: 461 WKDILARGFTKSRI-TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYC 519

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A    +   V   M++    P++  YN +I    K+  + ++ +   +M  RG+ PN +
Sbjct: 520 KASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIV 579

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+  + K G++ K  S   ++  + +  +    + ++S   + G +++   L   M
Sbjct: 580 TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 639

Query: 303 KERHCVPDNITF 314
            +    PD+  F
Sbjct: 640 VDHGFFPDHECF 651



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 153/340 (45%), Gaps = 12/340 (3%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  + + A  L + ML  GLK ++ +  +L++ Y + G + EA   I  M    + K
Sbjct: 307 GYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-WNLK 365

Query: 63  PDVYTYSILIKS-CTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           PD Y+Y+ L+   C + H    F+L +K+L E    GIE + +TYNT++ G  +   F++
Sbjct: 366 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE----GIEPTVLTYNTLLKGLCRVGAFDD 421

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               +  M++ G   PD    ++++       N E     + +    G      T N + 
Sbjct: 422 ALQIWHLMMKRG-VAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 480

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               + G   +   + D M+     P  +TY  +I+ + KA ++ +  +    M+   + 
Sbjct: 481 SGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPIS 540

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+   Y SL+S   K+  +++V  +L ++    +  +   +  +I  + + G ++K    
Sbjct: 541 PSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 600

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  M E     + I  +TM+     LG  + A  L  KM+
Sbjct: 601 YFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMV 640



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 139/312 (44%), Gaps = 3/312 (0%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           S  V+  ++  Y + GL   A    ++M       P + + + L+ +  K         +
Sbjct: 121 SPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRI-PSLRSCNSLLNNLVKNGETHTAHYV 179

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             +M  +GI       + +++ + K  K +E  + F   +E+ G  P+I T +S+I+ Y 
Sbjct: 180 YQQMIRVGIVPDVFMVSIMVNAFCKDGKVDE-AAGFVKKMENLGVEPNIVTYHSLINGYV 238

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTV 206
           + G++E  +      +  GV  ++ T  +L K Y +    D+   V+  MQ+     P  
Sbjct: 239 SLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDE 298

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
             Y ++I+ + + G I+       +M   G+K N     SL++ Y K G I + + ++ +
Sbjct: 299 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 358

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + + ++  D+  +N ++  Y + G   +   L   M +    P  +T+ T+++    +G 
Sbjct: 359 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 418

Query: 327 TEAAQNLENKMI 338
            + A  + + M+
Sbjct: 419 FDDALQIWHLMM 430



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/350 (19%), Positives = 140/350 (40%), Gaps = 54/350 (15%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
            +P+V  Y  LV    +  + DE  + +N                 L+  C    R ++I
Sbjct: 64  FRPNVKSYCKLVHILSRGRMYDETRAYLNQ----------------LVDLCKFKDRGNVI 107

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
              L  + Y     S   ++ I+  Y +    +     F  M + G   P + + NS+++
Sbjct: 108 WDELVGV-YREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRI-PSLRSCNSLLN 165

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               +G        Y +   +G+  D+  ++I+  ++ + G  D+    +  M+     P
Sbjct: 166 NLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEP 225

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            +VTY+ +I  +   G +E  +   K M  +G+  N +TY  L+  Y K   + + + +L
Sbjct: 226 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 285

Query: 265 R--------------------------QVENSDVILD--------TPFFNC--IISAYGQ 288
           R                          +++++  +LD        T  F C  +I+ Y +
Sbjct: 286 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 345

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            G++ +   +   M + +  PD+ ++ T++  Y   G T  A NL +KM+
Sbjct: 346 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML 395


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 157/335 (46%), Gaps = 4/335 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C++     A  L + M+  G KP +  Y A++ +  ++  +++AF    +++     +
Sbjct: 164 GFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER-KGIR 222

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V TY+ L+       R+    ++L++M    I  + +TY+ ++D + K  K  E +  
Sbjct: 223 PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKEL 282

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV      PDI T +S+++       I++  + ++     G  AD+ + N L   + 
Sbjct: 283 FEEMVRMS-IDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC 341

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A   +    +   M +R      VTYN +I+ F +AG ++K +E+F +M   G+ P+  
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 401

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+      G + K   I   ++  ++ LD   +  +I    + G VE+   LF ++
Sbjct: 402 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 461

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   PD +T+ TM+      G+    + L  KM
Sbjct: 462 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 153/327 (46%), Gaps = 2/327 (0%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C Q   A  +   ML  G +P      +LV+ + +   + +A S ++ M  +   KPD+ 
Sbjct: 133 CFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG-YKPDIV 191

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y+ +I S  K  R +       E+   GI  + VTY  +++G   + ++ +     S M
Sbjct: 192 AYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM 251

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           ++     P++ T ++++ A+  +G + + ++ + E   M +  DI T + L         
Sbjct: 252 IKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDR 310

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            D+   + D M  +     VV+YN +I  F KA  +E   + F++M  RG+  N++TY +
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+  + +AG + K      Q++   +  D   +N ++      G++EK   +F  M++R 
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNL 333
              D +T+ T+I+     G  E A +L
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSL 457



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 154/316 (48%), Gaps = 10/316 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDC 61
           L K K+   A   F+ +   G++P+V  YTALV+    S    +A   ++DM  K ++  
Sbjct: 200 LCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKIT-- 257

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            P+V TYS L+ +  K  +    +++  EM  + I+   VTY+++++G     + +E   
Sbjct: 258 -PNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQ 316

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  MV S GC  D+ + N++I+ +  +  +E   K + E +  G+ ++  T N L + +
Sbjct: 317 MFDLMV-SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375

Query: 182 GRAGMYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +AG  DK +    F Q  FF   P + TYNI++      G +EK    F+ M+ R M  
Sbjct: 376 FQAGDVDKAQEF--FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +TY +++    K G + +  S+   +    +  D   +  ++S     G + ++  L+
Sbjct: 434 DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALY 493

Query: 300 LTMKERHCVPDNITFA 315
             MK+   + ++ T +
Sbjct: 494 TKMKQEGLMKNDCTLS 509



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 57/305 (18%), Positives = 132/305 (43%), Gaps = 8/305 (2%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           L++A    +DM   S   P +  ++ L+ +  K  ++D++  +  +M  LGI     T+N
Sbjct: 66  LNDAIDLFSDMVK-SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I+ +    +     S    M++ G   PD  T+ S+++ +     +       ++   
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGY-EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 183

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
           +G K DI   N +  S  +    +        ++++   P VVTY  ++     +     
Sbjct: 184 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
                  M  + + PN ITY +L+ A+ K G +++   +  ++    +  D   ++ +++
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVN 303

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
                  +++  ++F  M  + C+ D +++ T+I  +        A+ +E+ M   +E S
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC------KAKRVEDGMKLFREMS 357

Query: 345 GKKLI 349
            + L+
Sbjct: 358 QRGLV 362


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 162/352 (46%), Gaps = 51/352 (14%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +YT +++ + ++G +D+AF  +++MK     K DV  +S LI+   +  R D   + L +
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKE-RGVKMDVLLHSTLIQGLCRKGRID---EALEQ 56

Query: 91  MSYLGIECS--AVTYNTIIDGYGKAKK-------FEEMESSFSAMVESGGCHPDIFTLNS 141
              +G ECS   +TYNT+++G  KA +       F++ME  + A   S GC PD+ + ++
Sbjct: 57  FKSMGEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEA---SHGCEPDVISYST 113

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I A   +  ++K  +++     +G   ++ T + L     +    D+  S++  ++   
Sbjct: 114 VIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGED 173

Query: 202 FFPTVVTYNIVIETFGKAG----------HI-------------------------EKME 226
             P  + YN V+  F + G          H+                         EK  
Sbjct: 174 MVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKAC 233

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
           ++F+++   G KPN +TY   V    KAG + +   IL ++  S V  D   ++ II  +
Sbjct: 234 QFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGF 293

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +AG ++K  ++F  M    C+P  +TF T++  ++    +  A  +   M+
Sbjct: 294 CKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMV 345



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 141/298 (47%), Gaps = 2/298 (0%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
           S G +P V  Y+ ++ A  ++  +D+A+     M++V  C P+V TYS LI    K  R 
Sbjct: 101 SHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVG-CAPNVVTYSSLIDGLCKVDRV 159

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           D    +L ++    +   A+ YN +++G+ +  K  E       M E G    +I   N+
Sbjct: 160 DEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGF-GINIIDFNA 218

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           M+ A   +   EK  +++      G K ++ T N+      +AG  D+   ++  M +  
Sbjct: 219 MLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESK 278

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P V+TY+ +I+ F KAG ++K ++ F +M      P+ +T+ +L+  +S+     +  
Sbjct: 279 VTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAF 338

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
            +   + N+  I     +N ++     A  VE   E++  MK +   PD  T+A +IQ
Sbjct: 339 RVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQ 396



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 117/269 (43%), Gaps = 17/269 (6%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           KP+V TY++ +    K  + D   +IL EM    +    +TY++IIDG+ KA + ++ + 
Sbjct: 245 KPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADD 304

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F+ M+    C P   T  +++  +       +  + + +    G    +QT N+L    
Sbjct: 305 VFTRMM-VHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
             A   +    +   M+++   P   TY  +I+   +A  +++ +E+   M+   + PN 
Sbjct: 364 CGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNG 423

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
               +LV    K G          +V+ +  +LD     C      +AG+ ++  E+   
Sbjct: 424 AICHALVEVLCKQG----------EVDEACSVLDNVVEIC------KAGEPDEAVEVIEQ 467

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAA 330
           M  +   PD  T+  ++++   L   ++A
Sbjct: 468 MVLKGVRPDEATYVAVLRSLCGLDRVDSA 496



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/326 (20%), Positives = 131/326 (40%), Gaps = 37/326 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ ++A   F+ M + G  P+V  Y++L+    +   +DEA+S +  +K   D  P
Sbjct: 118 LCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKG-EDMVP 176

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI--------------------------- 96
               Y+ ++    +  +     ++L  M   G                            
Sbjct: 177 RAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFF 236

Query: 97  --------ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
                   + + VTYN  + G  KA K +E       MVES    PD+ T +S+I  +  
Sbjct: 237 ERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESK-VTPDVITYSSIIDGFCK 295

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +G ++K +  +    +        T   L   +       +   V + M    F P + T
Sbjct: 296 AGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQT 355

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN++++    A  +E   E + KMK +  +P++ TY  L+    +A  + +    L  +E
Sbjct: 356 YNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVME 415

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEK 294
             +V+ +    + ++    + G+V++
Sbjct: 416 ADNVVPNGAICHALVEVLCKQGEVDE 441



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 113/307 (36%), Gaps = 56/307 (18%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E+A   FE +L  G KP+V  Y   V    ++G +DEA+  + +M   S   P
Sbjct: 223 LWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVE-SKVTP 281

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TYS +I    K  R D  + +   M         VT+ T++ G+ + KK  E     
Sbjct: 282 DVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVH 341

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV +G   P + T N ++     + ++E   + Y++      + D  T   L +   R
Sbjct: 342 EDMVNAGFI-PGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCR 400

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH---------------------- 221
           A   D+ +  +D M+     P     + ++E   K G                       
Sbjct: 401 ARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDE 460

Query: 222 -IEKMEEY-------------------------------FKKMKHRGMKPNSITYCSLVS 249
            +E +E+                                F+KM  RG  P  +TY  L+ 
Sbjct: 461 AVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIG 520

Query: 250 AYSKAGL 256
               A +
Sbjct: 521 EACSADM 527



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 19/165 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC-- 61
           L + ++ ++A    +VM +D + P+  +  ALV    + G +DEA S ++++  +     
Sbjct: 398 LCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGE 457

Query: 62  ----------------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
                           +PD  TY  +++S     R D       +M+  G     VTY  
Sbjct: 458 PDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTL 517

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           +I     A   ++    F AMV + G  P   T+ ++ S   ++G
Sbjct: 518 LIGEACSADMADDAFRIFEAMV-AAGFTPQAQTMRTLSSCLRDAG 561



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V + K  +P++A  + E M+  G++P    Y A++ +      +D A +    M S   
Sbjct: 449 VVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMAS-RG 507

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           C P + TY++LI         D   +I   M   G    A T  T+
Sbjct: 508 CAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTPQAQTMRTL 553


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 154/333 (46%), Gaps = 8/333 (2%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA   F++M+     P +  +  L+    +     + FS  N+M+ ++   PD++T SIL
Sbjct: 74  QAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMR-LAGLSPDLFTLSIL 132

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
                  +R       +A +   G   + VTY T+I G     +  E    F  M +  G
Sbjct: 133 ANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRM-QKLG 191

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWY----NEFNLMGV--KADIQTLNILTKSYGRAG 185
           C P+  T  ++I     +GN+    K +    N+ +  GV  K  + T +I+     + G
Sbjct: 192 CTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVG 251

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D+ + + + M+ +   P V++Y+ +I  F  AG  ++ +  F +M  +G++P+ +T+ 
Sbjct: 252 REDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFS 311

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+    K G + +   +L  +    ++ +   +N +I  +   GD+    ELFL+M  +
Sbjct: 312 VLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSK 371

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              PD I++ T+I  Y      + A NL N+M+
Sbjct: 372 GLEPDEISYTTLINGYCKTWKVKEAMNLYNEML 404



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 151/340 (44%), Gaps = 4/340 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  + ++A  LFE M + G+ P V  Y+ L+  +  +G  D++    ++M   
Sbjct: 242 IIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVD- 300

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              +PD+ T+S+LI +  K  +    +K+L  M   GI  + +TYN++IDG+        
Sbjct: 301 QGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNS 360

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F +M  S G  PD  +  ++I+ Y  +  +++    YNE   +G   ++ T   L 
Sbjct: 361 ARELFLSM-PSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLL 419

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           K   + G     + +   M+          Y I ++   K   + +  E F ++K    K
Sbjct: 420 KGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFK 479

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            N   Y  L+    KAG +     +  ++    +  D   +N +I  + + G V+    L
Sbjct: 480 LNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANIL 539

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  M+E  C PD I + T++  +      E    L +KM+
Sbjct: 540 FEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMV 579



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 138/290 (47%), Gaps = 8/290 (2%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           +L  G  P+V  YT L+        + EA      M+ +  C P+  TY  LIK   +  
Sbjct: 152 ILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLG-CTPNAVTYGTLIKGLCQTG 210

Query: 80  RFDLIEKILAEM----SYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
             ++  K+  EM    S  G+ C    +TY+ IIDG  K  + +E +  F  M ++ G  
Sbjct: 211 NVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEM-KAQGMI 269

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           PD+ + +++I  +  +G  ++ +  ++E    GV+ D+ T ++L  +  + G   + + +
Sbjct: 270 PDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKL 329

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           ++ M +R   P ++TYN +I+ F   G +    E F  M  +G++P+ I+Y +L++ Y K
Sbjct: 330 LEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCK 389

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
              + +  ++  ++       +   +  ++    Q G V    +LF  MK
Sbjct: 390 TWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMK 439



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 128/298 (42%), Gaps = 39/298 (13%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +Q+  LF+ M+  G++P +  ++ L+    + G + EA   +  M       P++ TY+ 
Sbjct: 289 DQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQ-RGIVPNLITYNS 347

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI         +   ++   M   G+E   ++Y T+I+GY K  K +E  + ++ M++ G
Sbjct: 348 LIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVG 407

Query: 131 GCHPDIFTLNSMISA-------------------YGNSGN-----------------IEK 154
              P++ T  +++                     YG S N                  E 
Sbjct: 408 K-SPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEA 466

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
           ME  +NE      K +I+  + L     +AG  +    + + + +    P VVTYNI+I 
Sbjct: 467 ME-LFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIH 525

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
            F K G ++     F+KM+  G  P+ I Y +L+  + +   + +V  +L ++   DV
Sbjct: 526 GFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDV 583



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 114/244 (46%), Gaps = 19/244 (7%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  LF  M S GL+P    YT L++ Y ++  + EA +  N+M  V    P+V TY  L+
Sbjct: 361 ARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGK-SPNVTTYGTLL 419

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-------AKKFEEMES-SFS 124
           K   +  +    +K+   M   G+  ++  Y   +DG  K        + F E++S +F 
Sbjct: 420 KGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFK 479

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +E+  C         +I     +G +E   + + + +  G++ D+ T NI+   + + 
Sbjct: 480 LNIENYSC---------LIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKV 530

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D    + + M++    P ++ YN ++  F +   +E++ +   KM  + + PN+ + 
Sbjct: 531 GQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAAS- 589

Query: 245 CSLV 248
           C++V
Sbjct: 590 CTIV 593



 Score = 44.7 bits (104), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 3/116 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E A  LFE +  +GL+P V  Y  ++  + + G +D A      M+  + C 
Sbjct: 491 GLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEE-NGCT 549

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           PD+  Y+ L+    + ++ + + K+L +M    +  +A +   ++D   K +K+++
Sbjct: 550 PDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKK 605


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 165/401 (41%), Gaps = 71/401 (17%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + + PEQA   F  M+  GL P  + +  L+    +S   ++A+   N+ K   + K DV
Sbjct: 107 RSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKG--NVKLDV 164

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           Y++ I+IK C +    D   ++L +M  +G+  + V Y T+IDG  K    E  +  F  
Sbjct: 165 YSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYK 224

Query: 126 MVESG----------------------------------GCHPDIFTLNSMISAYGNSGN 151
           M E                                    G  P+++T NSMI    N G 
Sbjct: 225 MGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGK 284

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILT--------------------------------- 178
           +    + ++E    GV  ++ T N L                                  
Sbjct: 285 LNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNT 344

Query: 179 --KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
               Y   G  DK  S+ + M+     P++ TYNI+I  F +A +   + +  ++M+ RG
Sbjct: 345 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 404

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + P+ +TY  L+ A  ++  I K   I   +E + ++ D   +  +I      GD+++  
Sbjct: 405 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 464

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +LF ++ E H  P+++ + TMI  Y   G +  A  L  +M
Sbjct: 465 KLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEM 505



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 137/292 (46%), Gaps = 10/292 (3%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           YT L++ + + GL  +       MK ++   P+VYTY+ +I  C    + +   ++  EM
Sbjct: 237 YTVLINGFFKMGLKKDGIELYEKMK-LTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEM 295

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
              G+ C+ VTYNT+I G  + ++  E E     M +  G  P++ + N++I  Y + GN
Sbjct: 296 RERGVACNVVTYNTLIGGLCQERRVLEAERLMCRM-KRDGLSPNLISYNTLIDGYCSIGN 354

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA----GMYDKMRSVMDFMQKRFFFPTVV 207
           ++K    +N+    G    + T NIL   +  A    G+ D +R     M+ R   P+ V
Sbjct: 355 LDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVRE----MEARGLSPSKV 410

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY I+++   ++ +IEK  + +  M+  G+  +   Y  L+      G + +   + + +
Sbjct: 411 TYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSL 470

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
           +   +  +   +N +I  Y + G   +   L   M E   VP+  ++ + IQ
Sbjct: 471 DEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQ 522



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 5/247 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C++    +A  L   M  DGL P++  Y  L+  Y   G LD+A S  N MKS S   
Sbjct: 313 GLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKS-SGQS 371

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P + TY+ILI   ++      +  ++ EM   G+  S VTY  ++D   ++   E+    
Sbjct: 372 PSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQI 431

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +S+M E  G   DI+    +I      G++++  K +   + M +K +    N +   Y 
Sbjct: 432 YSSM-EKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYC 490

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   +   ++  M +    P V +YN  I+   K     + E   K M   G+KP SI
Sbjct: 491 KEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKP-SI 549

Query: 243 TYCSLVS 249
           +  +++S
Sbjct: 550 SIWNMIS 556



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 105/272 (38%), Gaps = 35/272 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L+E M   G+ P+V  Y +++      G L+ AF   ++M+       +V TY+ LI   
Sbjct: 256 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRE-RGVACNVVTYNTLIGGL 314

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----- 130
            +  R    E+++  M   G+  + ++YNT+IDGY      ++  S F+ M  SG     
Sbjct: 315 CQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSL 374

Query: 131 -----------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
                                        G  P   T   ++ A   S NIEK  + Y+ 
Sbjct: 375 ATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSS 434

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G+ ADI    +L       G   +   +   + +    P  V YN +I  + K G 
Sbjct: 435 MEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGS 494

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
             +     K+M   GM PN  +Y S +    K
Sbjct: 495 SYRALRLLKEMGENGMVPNVASYNSTIQILCK 526



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 2/136 (1%)

Query: 203 FPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
           FPT V+ +  +I    ++   E+   YF +M  RG+ P S T+ +L+    K+    K  
Sbjct: 91  FPTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAW 150

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +  + +  +V LD   F  +I    + G ++K  E+   M+E    P+ + + T+I   
Sbjct: 151 RVFNETK-GNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGC 209

Query: 322 NALGMTEAAQNLENKM 337
              G  E  + L  KM
Sbjct: 210 CKNGDIERGKQLFYKM 225


>gi|298706415|emb|CBJ29411.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 150/315 (47%), Gaps = 4/315 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G++PSV+ Y+  ++A  + G   EA   + +M+   + K DV  YS  I +C    R+  
Sbjct: 5   GIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQE 64

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              IL++M  +G+  + ++ N  I  +G+A +++   S    M ++G   PD  + N+ I
Sbjct: 65  AVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAG-LSPDAISYNTAI 123

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN--ILTKSYGRAGMYDKMRSVMDFMQKRF 201
           SA G +G  E+ ++  +E + +G++  + T N  I   + G  G + +  +++  M    
Sbjct: 124 SALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAG 183

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P  +TYN +I   GK G  ++     K MK +G+  + I Y + +SA  +AG      
Sbjct: 184 VTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSV 243

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +L + ++  +  D   +   ++A   A   +K   L   M      PD   F ++I A 
Sbjct: 244 GLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAAL 303

Query: 322 NALG-MTEAAQNLEN 335
              G  T+A + LE+
Sbjct: 304 GHDGQWTQAVEILES 318



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 154/337 (45%), Gaps = 16/337 (4%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 74
           LL E+   D +K  V  Y+A ++A    G   EA + ++DM +V   +P+V + +  IK+
Sbjct: 32  LLREMEEDDEIKLDVVAYSAAITACANGGRWQEAVAILSDMPNVG-VRPNVISCNAAIKA 90

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             +  ++     IL  MS  G+   A++YNT I   G A + E+ +   S M   G   P
Sbjct: 91  WGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAGQSEQAQELMSEMSRLG-IEP 149

Query: 135 DIFTLNSMISA--YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            + T NS I+A   G  G   +        +L GV  D  T N L  + G+ G + +  S
Sbjct: 150 TVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVTPDSITYNSLIVACGKGGQWKQALS 209

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V+  M+K+     ++ Y+  I   G+AG  E       + K  G+ P+ + Y + V+A +
Sbjct: 210 VLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSVGLLAEAKSLGITPDLVAYTAAVTACA 269

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
            A    K   +L+++ ++ +  D   F  +I+A G  G   +  E+  +M  +   P N 
Sbjct: 270 DANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGHDGQWTQAVEILESMP-KMGAPRN- 327

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
               M+  YNAL  + A     N  +A  E  G  L+
Sbjct: 328 ---AMV--YNALITSWA-----NAEVAKGEEEGGALL 354



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 124/280 (44%), Gaps = 2/280 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +   M + G++P+V    A + A+G++G    A S +  M S +   PD  +Y+ 
Sbjct: 63  QEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGM-SKAGLSPDAISYNT 121

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES-SFSAMVES 129
            I +     + +  +++++EMS LGIE + VTYN+ I    +    +  ++ +    +  
Sbjct: 122 AISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSL 181

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            G  PD  T NS+I A G  G  ++           G+  DI   +    + G AG ++ 
Sbjct: 182 AGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEY 241

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              ++   +     P +V Y   +     A   +K     K+M   G++P++  + SL++
Sbjct: 242 SVGLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIA 301

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           A    G   +   IL  +       +   +N +I+++  A
Sbjct: 302 ALGHDGQWTQAVEILESMPKMGAPRNAMVYNALITSWANA 341



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 111/240 (46%), Gaps = 2/240 (0%)

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M  LGI  S  +Y+  +    K  +++E       M E      D+   ++ I+A  N G
Sbjct: 1   MPGLGIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGG 60

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
             ++     ++   +GV+ ++ + N   K++G AG +    S++  M K    P  ++YN
Sbjct: 61  RWQEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYN 120

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK--AGLIMKVDSILRQVE 268
             I   G AG  E+ +E   +M   G++P  +TY S ++A ++   G   +  ++++ + 
Sbjct: 121 TAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMS 180

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
            + V  D+  +N +I A G+ G  ++   +   MK++    D I ++  I A    G  E
Sbjct: 181 LAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWE 240



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 5/226 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSA--YGQSGLLDEAFSTINDMKSVSDC 61
           LG   Q EQA  L   M   G++P+V  Y + ++A   G  G   +A + +  M S++  
Sbjct: 126 LGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHM-SLAGV 184

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PD  TY+ LI +C K  ++     +L  M   G+ C  + Y+  I   G+A ++E    
Sbjct: 185 TPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWE-YSV 243

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
              A  +S G  PD+    + ++A  ++   +K      E    G++ D      L  + 
Sbjct: 244 GLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAAL 303

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           G  G + +   +++ M K       + YN +I ++  A  + K EE
Sbjct: 304 GHDGQWTQAVEILESMPKMGAPRNAMVYNALITSWANA-EVAKGEE 348



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 6/253 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  Q + A  +   M   GL P    Y   +SA G +G  ++A   +++M  +   +P 
Sbjct: 92  GEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAGQSEQAQELMSEMSRLG-IEPT 150

Query: 65  VYTYSILIKSCTK--FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           V TY+  I +  +    ++     ++  MS  G+   ++TYN++I   GK  ++++  S 
Sbjct: 151 VVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVTPDSITYNSLIVACGKGGQWKQALSV 210

Query: 123 FSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
              M + G  C  DI   ++ ISA G +G  E       E   +G+  D+        + 
Sbjct: 211 LKGMKKQGLSC--DIIGYSAAISACGEAGQWEYSVGLLAEAKSLGITPDLVAYTAAVTAC 268

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
             A   DK   ++  M      P    +  +I   G  G   +  E  + M   G   N+
Sbjct: 269 ADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGHDGQWTQAVEILESMPKMGAPRNA 328

Query: 242 ITYCSLVSAYSKA 254
           + Y +L+++++ A
Sbjct: 329 MVYNALITSWANA 341



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 2/149 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V  GK  Q +QA  + + M   GL   +  Y+A +SA G++G  + +   + + KS+  
Sbjct: 195 IVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSVGLLAEAKSLG- 253

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD+  Y+  + +C   ++ D    +L EM   GI   A  + ++I   G   ++ +  
Sbjct: 254 ITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGHDGQWTQAV 313

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNS 149
               +M + G    +    N++I+++ N+
Sbjct: 314 EILESMPKMGAPR-NAMVYNALITSWANA 341


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 160/371 (43%), Gaps = 37/371 (9%)

Query: 3   MLGKCKQPEQAS----LLFEVMLSDGLKPSV--DVYTALVSAYGQSGLLDEAFSTINDMK 56
           +LG   +P  A+    LL    L+ G + S    V   L+S     GLLD+A   +  ++
Sbjct: 102 LLGAGHRPHLAASLVDLLHRAALALGPRRSALPSVVDTLLSLLADHGLLDDAVRALARVR 161

Query: 57  SVS------DCK------------------------PDVYTYSILIKSCTKFHRFDLIEK 86
            +        C                         P+V+T++I+I    K         
Sbjct: 162 QLRVPPNTRTCNHILLRLARNRQGGLVRRLFDLLPVPNVFTFNIVIDFLCKEGELVEARA 221

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +   M  +G     VTYN++IDGYGK    EE+E   S M +SG C  D+ T N++I+ +
Sbjct: 222 LFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSG-CAADVVTYNALINCF 280

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G +EK   ++ E    GV A++ T +    ++ + G+  +   +   M+ R   P  
Sbjct: 281 SKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNE 340

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TY  +++   KAG ++       +M H+G+ PN +TY  +V    K G + + D++L  
Sbjct: 341 FTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSL 400

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +E   V  +   +  +I  +    + E+  +L   MK +    D   + T+I        
Sbjct: 401 MERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQK 460

Query: 327 TEAAQNLENKM 337
            + A++L +KM
Sbjct: 461 VDEAKSLLHKM 471



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 143/328 (43%), Gaps = 2/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A   F  M   G+  +V  ++  V A+ + GL+ EA      M+ V    P+ +TY+ 
Sbjct: 287 EKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMR-VRGMMPNEFTYTS 345

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  R D    +L EM + G+  + VTY  ++DG  K  K  E ++  S M E G
Sbjct: 346 LVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLM-ERG 404

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G   +     ++I  +  + N E+     N+    G++ D+     L     +    D+ 
Sbjct: 405 GVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEA 464

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           +S++  M      P  V Y  +++   KAG   +      K+   G +PN +TYC+L+  
Sbjct: 465 KSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDG 524

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             KAG I +  S   ++    +  +   +  +I  + + G + K   L   M ++    D
Sbjct: 525 LCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLD 584

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
            + + ++I  Y      + A  L+ KMI
Sbjct: 585 KVVYTSLIDGYMKQANLQDAFALKTKMI 612



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 3/191 (1%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+ E  +LL ++ L  G +P+V  Y AL+    ++G + EA S  N M+ +    P+V  
Sbjct: 495 KESEAVALLHKI-LDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELG-LDPNVQA 552

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ LI    K    +    ++ EM   G+    V Y ++IDGY K    ++  +  + M+
Sbjct: 553 YTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMI 612

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           ES G   D++     IS + N   +++     +E    G+  D    N L + Y + G  
Sbjct: 613 ES-GLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNM 671

Query: 188 DKMRSVMDFMQ 198
           ++  S+ + M+
Sbjct: 672 EEASSLQNEME 682



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 97/234 (41%), Gaps = 4/234 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + ++A  L   M   GL+P+  +YT ++ A  ++G   EA + ++ +   S
Sbjct: 451 LIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILD-S 509

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +P+V TY  LI    K            +M  LG++ +   Y  +IDG+ K     + 
Sbjct: 510 GFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKA 569

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
               + M++  G   D     S+I  Y    N++       +    G++ D+        
Sbjct: 570 MHLMNEMIDK-GMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFIS 628

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            +    M  + R V+  M      P    YN +I  + K G++E+      +M+
Sbjct: 629 GFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEME 682


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 171/372 (45%), Gaps = 37/372 (9%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           + GK +  + A  L ++M S G++ +V  ++ LV  Y ++GL  EA    N M+    CK
Sbjct: 152 LAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYG-CK 210

Query: 63  PDVYTYSILIKS-CTKF-------------HRF--DLI------------------EKIL 88
           PD  ++SI+I S C K              H+F  D+I                  E++ 
Sbjct: 211 PDKVSFSIVISSLCKKRRASEAELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVF 270

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
           ++M   G++ +  TY+ +ID   +  +       FS M+++G C P+  T NS++  +  
Sbjct: 271 SDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAG-CDPNAVTFNSLMRVHVK 329

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +G  EK+ + YN+   +G  AD  + N L +S+ +    D+   V+D M K+   P   T
Sbjct: 330 AGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNAST 389

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           +N +     +   +      + KMK     PN++TY  L+  ++ +  I  V  + ++++
Sbjct: 390 FNSIFGCIAELHDVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMD 449

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT-FATMIQAYNALGMT 327
            S+V  +   +  +I  + + G       L   M E  C+  N++ + T+++     G  
Sbjct: 450 ESEVEPNVNTYRILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQL 509

Query: 328 EAAQNLENKMIA 339
           +  + L  KM+A
Sbjct: 510 KKHEELVEKMVA 521



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 126/274 (45%), Gaps = 2/274 (0%)

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ +I    K   FDL   ++  M   G+  +  T++ ++  Y +A    E   +F+ M 
Sbjct: 146 YNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRM- 204

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E  GC PD  + + +IS+        + E +++       + D+     L   + RAG  
Sbjct: 205 EDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLK-HKFEPDVIVYTSLVHGWCRAGDI 263

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            K   V   M++    P V TY+IVI++  + G I +  + F +M   G  PN++T+ SL
Sbjct: 264 AKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSL 323

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  + KAG   KV  +  Q++      DT  +N +I ++ +  ++++  ++  TM ++  
Sbjct: 324 MRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGV 383

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            P+  TF ++      L     A  +  KM  +K
Sbjct: 384 APNASTFNSIFGCIAELHDVNGAHRMYAKMKELK 417



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 3/234 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +C Q  +A  +F  M+  G  P+   + +L+  + ++G  ++     N MK +  C  
Sbjct: 292 LCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLG-CAA 350

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  +Y+ LI+S  K    D   K+L  M   G+  +A T+N+I     +          +
Sbjct: 351 DTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMY 410

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M E   C P+  T N ++  + +S +I+ + K   E +   V+ ++ T  IL   +  
Sbjct: 411 AKMKELK-CMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCE 469

Query: 184 AGMYDKMRSVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
            G ++   ++M + ++++   P +  Y  V+E    AG ++K EE  +KM  RG
Sbjct: 470 KGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVARG 523



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 87/179 (48%), Gaps = 9/179 (5%)

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
           L G  +  +  N +    G+   +D    ++D M+ R    TV T+++++  + +AG   
Sbjct: 136 LEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAA 195

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV----DSILRQVENSDVILDTPFF 279
           +    F +M+  G KP+ +++  ++S+  K     +     DS+  + E  DVI+    +
Sbjct: 196 EAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKFE-PDVIV----Y 250

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             ++  + +AGD+ K  E+F  MKE    P+  T++ +I +    G    A ++ ++MI
Sbjct: 251 TSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMI 309


>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 890

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 150/317 (47%), Gaps = 1/317 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            G+  +   A  LF  M S G+ P+V  Y +++ A  +  +  +      D    +   P
Sbjct: 258 FGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGLMP 317

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY+ L+  C     +++ +K+L+EM +  I     TYNT +D   KA + +     F
Sbjct: 318 DRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVF 377

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M  S    P++ T ++M+  Y  +  +E     Y E  L  V  D  + N L   Y +
Sbjct: 378 EEM-SSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGIYEK 436

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+       M++      VVTYN ++  +GK G  +++   F++MK R + PN++T
Sbjct: 437 LGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLT 496

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +++  Y+K  +  +   + R+ + + + +D  F++ II    + G +E    L + M 
Sbjct: 497 YSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNGLMESSIMLLMAMM 556

Query: 304 ERHCVPDNITFATMIQA 320
           E+   P+ +TF ++I A
Sbjct: 557 EKGIKPNVVTFNSIIDA 573



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 140/270 (51%), Gaps = 2/270 (0%)

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSF 123
           V+++S +I +  +  RF     +   MS  G+  + +TYN+IID   K +  F+ +   +
Sbjct: 248 VHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFY 307

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ + G  PD  T NS++S   + G  E  +K  +E +   +  D+ T N    +  +
Sbjct: 308 DEMI-ANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCK 366

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  D  R V + M  +  +P VVTY+ +++ + KA  +E     +++MK R +  + ++
Sbjct: 367 AGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVS 426

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +LV  Y K G + +     +++E S +  D   +N ++S YG+ G  +++  LF  MK
Sbjct: 427 YNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEMK 486

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            R+  P+ +T++TMI  Y    M + A ++
Sbjct: 487 ARNIYPNTLTYSTMIDMYTKGEMFQEAMDV 516



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 139/278 (50%), Gaps = 2/278 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
            ++ M+++GL P    Y +L+S     G+ + A   +++M       PDV+TY+  + + 
Sbjct: 306 FYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRC-IVPDVFTYNTYLDTL 364

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  + DL  ++  EMS   +  + VTY+ ++DGY KA   E+  + +  M     C  D
Sbjct: 365 CKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCL-D 423

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             + N+++  Y   GN+++  +   E    G+  D+ T N L   YG+ GMYD++R + +
Sbjct: 424 RVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFE 483

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ R  +P  +TY+ +I+ + K    ++  + +++ K   ++ + + Y +++    K G
Sbjct: 484 EMKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNG 543

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           L+     +L  +    +  +   FN II A  Q+  +E
Sbjct: 544 LMESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSPTLE 581



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 138/333 (41%), Gaps = 72/333 (21%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  Q + A  +FE M S  + P+V  Y+A++  Y ++ LL++A +   +MK  S C  
Sbjct: 364 LCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCL- 422

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  +Y+ L+    K    D   +   EM   GI    VTYN ++ GYGK   ++E+   F
Sbjct: 423 DRVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLF 482

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ++   +P+  T ++MI  Y      ++    Y EF +  ++ D+   + +  +  +
Sbjct: 483 EEM-KARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCK 541

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET--------FG------------------ 217
            G+ +    ++  M ++   P VVT+N +I+         +G                  
Sbjct: 542 NGLMESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSPTLEYGVNGSSDAIDYPIEQSSPI 601

Query: 218 -------------------------KAGHIEKMEE----------YFKKMKHRGMKPNSI 242
                                    KAGH++K              F+KM    +KPN +
Sbjct: 602 VIDGAFQNKPGEDRILKMFEQLAAEKAGHLKKNRSGRQDKHCILWLFQKMHELNIKPNVV 661

Query: 243 TY------CSLVSAYSKAGLIMKVDSILRQVEN 269
           T+      CSL ++Y  A L++     LR  +N
Sbjct: 662 TFSAILNACSLCNSYEDASLLLDT---LRLFDN 691


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 147/300 (49%), Gaps = 2/300 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P V  Y AL++ + +   +D+A   ++ M+S  D  PD  TY+I+I S     + DL  
Sbjct: 151 QPDVFAYNALINGFCKMNRIDDATRVLDRMRS-KDFSPDTVTYNIMIGSLCSRGKLDLAL 209

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           K+L ++     + + +TY  +I+        +E       M+ S G  PD+FT N++I  
Sbjct: 210 KVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEML-SRGLKPDMFTYNTIIRG 268

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
               G +++  +      L G + D+ + NIL ++    G +++   +M  M      P 
Sbjct: 269 MCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 328

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           VVTY+I+I T  + G IE+     K MK +G+ P++ +Y  L++A+ + G +      L 
Sbjct: 329 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 388

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            + +   + D   +N +++   + G  ++  E+F  + E  C P++ ++ TM  A  + G
Sbjct: 389 TMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 448



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 150/325 (46%), Gaps = 4/325 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + + +LSD  +P+V  YT L+ A    G +DEA   +++M S    KPD++TY+ +I+  
Sbjct: 211 VLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLS-RGLKPDMFTYNTIIRGM 269

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K    D   +++  +   G E   ++YN ++       K+EE E   + M  S  C P+
Sbjct: 270 CKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMF-SEKCDPN 328

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T + +I+     G IE+           G+  D  + + L  ++ R G  D     ++
Sbjct: 329 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 388

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKA 254
            M      P +V YN V+ T  K G  ++  E F K+   G  PNS +Y ++ SA +S  
Sbjct: 389 TMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 448

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
             I  +  IL  V N  +  D   +N +IS   + G V+K  EL + M+     P  +T+
Sbjct: 449 DKIRALHMILEMVSNG-IDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTY 507

Query: 315 ATMIQAYNALGMTEAAQNLENKMIA 339
             ++  +      E A ++ + M+ 
Sbjct: 508 NIVLLGFCKAHRIEDAIDVLDSMVG 532



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 159/341 (46%), Gaps = 5/341 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L + MLS GLKP +  Y  ++    + G++D AF  I +++ +  C+PDV +Y+I
Sbjct: 241 DEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLE-LKGCEPDVISYNI 299

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++     +++  EK++ +M     + + VTY+ +I    +  K EE  +    M E G
Sbjct: 300 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 359

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD ++ + +I+A+   G ++   ++       G   DI   N +  +  + G  D+ 
Sbjct: 360 -LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 418

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   + +    P   +YN +      +G   +      +M   G+ P+ ITY S++S 
Sbjct: 419 LEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISC 478

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G++ K   +L  + + +       +N ++  + +A  +E   ++  +M    C P+
Sbjct: 479 LCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPN 538

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI---AMKENSGKKL 348
             T+  +I+     G    A  L N ++   A+ E S K+L
Sbjct: 539 ETTYTVLIEGIGFAGYRAEAMELANDLVRINAISEYSFKRL 579



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 1/211 (0%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G +PD+     +I  +    N+ K  +        G + D+   N L   + +    D  
Sbjct: 115 GYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDA 173

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V+D M+ + F P  VTYNI+I +    G ++   +   ++     +P  ITY  L+ A
Sbjct: 174 TRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEA 233

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G + +   +L ++ +  +  D   +N II    + G V++  E+   ++ + C PD
Sbjct: 234 TMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPD 293

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            I++  +++A    G  E  + L  KM + K
Sbjct: 294 VISYNILLRALLNQGKWEEGEKLMTKMFSEK 324


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 151/334 (45%), Gaps = 2/334 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K  ++A+ + E+M   G+ P V  Y  +V      G +DEA    + M+S     PDV
Sbjct: 293 KLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFK-LVPDV 351

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TY+ LI  C +    D   K++ EM   G++ + VT+N +I  +    K +E  +    
Sbjct: 352 VTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVK 411

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           MVESG   PD FT N+MI+ Y  +G + +  K  +E    G+K D  TLN L  +     
Sbjct: 412 MVESGFS-PDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEK 470

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D   ++    +KR +    VTY  +I  + K    ++  + +++MK  G+    ITY 
Sbjct: 471 QLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYN 530

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +++     +G   +    L ++    ++ D    N II  Y   G VEK  +    M E 
Sbjct: 531 TIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEH 590

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              PD  T   +++     GM E    L N  I+
Sbjct: 591 SLKPDIFTCNILLRGLCREGMLEKGLTLFNTWIS 624



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 140/306 (45%), Gaps = 2/306 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F+  +  G++P+V+ +  L+  Y      +EA   IN M     C PD  TY+ ++ + 
Sbjct: 198 VFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYG-CCPDNVTYNTVLTAL 256

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +   +  +L +M   G+  +  TYN ++ GY K K  +E       M    G  PD
Sbjct: 257 CKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMT-GKGMLPD 315

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           ++T N+M+    + G I++  +  ++     +  D+ T N L          D    +++
Sbjct: 316 VWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVE 375

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ R      VT+NI+I+ F   G I++      KM   G  P+  TY ++++ Y KAG
Sbjct: 376 EMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAG 435

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   ++ ++    + LDT   N ++        ++    L +  ++R  + D +T+ 
Sbjct: 436 KMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYG 495

Query: 316 TMIQAY 321
           T+I  Y
Sbjct: 496 TLIMGY 501



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 2/295 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++AS +   M+  G  P    Y  +++ Y ++G + EA+  +++M      K D +T + 
Sbjct: 403 DEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGR-KGLKLDTFTLNT 461

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +     + D    +  +    G     VTY T+I GY K ++ +     +  M E+G
Sbjct: 462 LLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETG 521

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
                I T N++I     SG  ++     NE    G+  D  T NI+   Y   G  +K 
Sbjct: 522 IV-ATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKA 580

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
               + M +    P + T NI++    + G +EK    F     +G   +++TY  ++S+
Sbjct: 581 FQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISS 640

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           + K   +     ++ ++E  ++  D   +N I++   +AG  E+  +L L   E+
Sbjct: 641 FCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEK 695



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 130/313 (41%), Gaps = 19/313 (6%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF---HRFD 82
           KP +D   A      Q  L  + F   N MK +   +P++ T + L+ +  +    H   
Sbjct: 138 KPLLDTSLAAYVISKQPHLGHQIF---NKMKRLR-FRPNLLTCNTLLNALVRSNSSHSLV 193

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
              ++  +   LG++ +  T+N +I GY      EE     + M E G C PD  T N++
Sbjct: 194 FSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCC-PDNVTYNTV 252

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           ++A      + ++     +    G+  +  T NIL   Y +     +   V++ M  +  
Sbjct: 253 LTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGM 312

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY-----SKAGLI 257
            P V TYN ++      G I++      KM+   + P+ +TY +L+        S A   
Sbjct: 313 LPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFK 372

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           +  +   R V+ + V       N +I  +   G +++   + + M E    PD  T+ TM
Sbjct: 373 LVEEMKARGVKENGVT-----HNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTM 427

Query: 318 IQAYNALG-MTEA 329
           I  Y   G M EA
Sbjct: 428 INGYCKAGKMAEA 440



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 2/258 (0%)

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--GCHPDIFTLN 140
           L  +I  +M  L    + +T NT+++   ++     +  S     ++   G  P++ T N
Sbjct: 156 LGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFN 215

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
            +I  Y +  N E+  +  N+    G   D  T N +  +  +     ++R ++  M+  
Sbjct: 216 ILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNS 275

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
             FP   TYNI++  + K   +++  E  + M  +GM P+  TY ++V      G I + 
Sbjct: 276 GLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEA 335

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +  ++E+  ++ D   +N +I    +    +   +L   MK R    + +T   MI+ 
Sbjct: 336 VRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKW 395

Query: 321 YNALGMTEAAQNLENKMI 338
           +   G  + A N+  KM+
Sbjct: 396 FCTEGKIDEASNVMVKMV 413



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 100/215 (46%), Gaps = 5/215 (2%)

Query: 134 PDIFTLNSMISAYGNSGNIEKM---EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           P++ T N++++A   S +   +    + + +   +GV+ ++ T NIL   Y      ++ 
Sbjct: 171 PNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEA 230

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M +    P  VTYN V+    K   + ++ +   +MK+ G+ PN  TY  LV  
Sbjct: 231 LRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHG 290

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K   + +   ++  +    ++ D   +N ++      G +++   L   M+    VPD
Sbjct: 291 YCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPD 350

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA--MKEN 343
            +T+ T+I        ++AA  L  +M A  +KEN
Sbjct: 351 VVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKEN 385



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 96/206 (46%), Gaps = 3/206 (1%)

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM---RSVMD 195
           L++ ++AY  S       + +N+   +  + ++ T N L  +  R+     +   R V  
Sbjct: 141 LDTSLAAYVISKQPHLGHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQ 200

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
              K    P V T+NI+I  +    + E+      +M   G  P+++TY ++++A  K  
Sbjct: 201 DAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRS 260

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +V  +L Q++NS +  +   +N ++  Y +   +++  E+   M  +  +PD  T+ 
Sbjct: 261 QLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYN 320

Query: 316 TMIQAYNALGMTEAAQNLENKMIAMK 341
           TM++     G  + A  L +KM + K
Sbjct: 321 TMVRGLCDEGKIDEAVRLRDKMESFK 346


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 154/328 (46%), Gaps = 6/328 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F+VM   G+ P+   YTAL++ Y   G  +  F+   +M+     +P++YTY+ L
Sbjct: 56  EARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALFAEMRR-DGVEPNLYTYNCL 114

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    +   F     +  EM   G+  + V+YN +I G  +  K ++    F AM   G 
Sbjct: 115 IGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREG- 173

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P I T N +I  YG +G +     ++N+    G+   + T N L   + R  + D  R
Sbjct: 174 IRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELICGFCR--VRDIAR 231

Query: 192 SVMDF--MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
           +V  F  M++R   PT VTY I+I  F K   +++      +M+  G++ +  +Y  L+ 
Sbjct: 232 AVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGLEVDVQSYGVLLH 291

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           A    G +M    + + ++   V  ++  ++ +I  YG+ G   K   L + M++   +P
Sbjct: 292 ALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIP 351

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
           +  ++   I+     G  + A+ L + M
Sbjct: 352 NVASYCLTIRLLCNEGKCQEAEALIDDM 379



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 111/262 (42%), Gaps = 36/262 (13%)

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           D   DV   + L+  C +        ++   M  LG+  + VTY  +I+GY   +   EM
Sbjct: 33  DAALDVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGY-FVRGHREM 91

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
             +  A +   G  P+++T N +I  +  +G  +     ++E  + GV  ++ + NIL  
Sbjct: 92  GFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIA 151

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              R         + + M++    P++VT+N++I+ +GKAG +     +F +MK  G+ P
Sbjct: 152 GLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPP 211

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +TY                                   N +I  + +  D+ +    F
Sbjct: 212 SVVTY-----------------------------------NELICGFCRVRDIARAVRAF 236

Query: 300 LTMKERHCVPDNITFATMIQAY 321
           L MKER   P  +T+  +I A+
Sbjct: 237 LDMKERGLAPTKVTYTILIAAF 258



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 117/253 (46%), Gaps = 11/253 (4%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G C+  +   A  LFE M  +G++PS+  +  L+  YG++G +  A    N MK+ 
Sbjct: 148 ILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKA- 206

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +   P V TY+ LI    +        +   +M   G+  + VTY  +I  + K     E
Sbjct: 207 AGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKEN---E 263

Query: 119 MESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           M+ +F  +  +E  G   D+ +   ++ A    G +    K +   +L GVK +    ++
Sbjct: 264 MDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDM 323

Query: 177 LTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
           +   YGR G  Y  +R +M+ M+K    P V +Y + I      G  ++ E     M+H 
Sbjct: 324 MIYGYGREGSSYKALRLIME-MRKNGLIPNVASYCLTIRLLCNEGKCQEAEALIDDMEHA 382

Query: 236 GMKPNSITYCSLV 248
           G++  S T C ++
Sbjct: 383 GLQ-TSETICRIL 394



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 119/290 (41%), Gaps = 37/290 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M  DG++P++  Y  L+  + ++G    A    ++M  V     +V +Y+ILI   
Sbjct: 95  LFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEM-PVKGVVHNVVSYNILIAGL 153

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +     ++   M   GI  S VT+N +IDGYGKA K       F+ M ++ G  P 
Sbjct: 154 CRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQM-KAAGLPPS 212

Query: 136 IFTLNSMISAYGNSGNIEKMEKWY-----------------------------------N 160
           + T N +I  +    +I +  + +                                   +
Sbjct: 213 VVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLS 272

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E    G++ D+Q+  +L  +    G     R +   M  +   P  V Y+++I  +G+ G
Sbjct: 273 EMEKAGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREG 332

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
              K      +M+  G+ PN  +YC  +      G   + ++++  +E++
Sbjct: 333 SSYKALRLIMEMRKNGLIPNVASYCLTIRLLCNEGKCQEAEALIDDMEHA 382



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 71/170 (41%)

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           D+     L     ++G   + R V D M +    P  VTY  +I  +   GH E     F
Sbjct: 37  DVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALF 96

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
            +M+  G++PN  TY  L+  + + G       +  ++    V+ +   +N +I+   + 
Sbjct: 97  AEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRH 156

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             ++   +LF  M+     P  +TF  +I  Y   G    A +  N+M A
Sbjct: 157 SKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKA 206


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 160/337 (47%), Gaps = 4/337 (1%)

Query: 5   GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  E  ++  L   +    +KP V +Y  ++++  ++ LL +A    ++M  V    
Sbjct: 171 GLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEM-IVKGIS 229

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TY+ LI              +L EM    I  +  T+N +ID   K  K +E +  
Sbjct: 230 PDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKIL 289

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M+++    PD+FT NS+I  Y     ++  +  +      GV  D+Q    +     
Sbjct: 290 LAVMMKAC-IKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLC 348

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +  M D+  S+ + M+ +   P +VTYN +I+   K  H+E+     K+MK +G++P+  
Sbjct: 349 KTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVY 408

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y  L+    K+G +     I +++      L+   +  +I+   +AG  ++  +L   M
Sbjct: 409 SYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKM 468

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +++ C+PD +TF  +I+A       + A+ +  +MIA
Sbjct: 469 EDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIA 505



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 139/286 (48%), Gaps = 2/286 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M+  G+ P V  YT L+  +   G L EAFS +N+MK + +  P+V T++ILI + +K  
Sbjct: 223 MIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMK-LKNINPNVCTFNILIDALSKEG 281

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           +    + +LA M    I+    TYN++IDGY    + +  +  F +M + G   PD+   
Sbjct: 282 KMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRG-VTPDVQCY 340

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
            +MI+    +  +++    + E     +  DI T N L     +    ++  ++   M++
Sbjct: 341 TNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKE 400

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           +   P V +Y I+++   K+G +E  +E F+++  +G   N   Y  L++   KAG   +
Sbjct: 401 QGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDE 460

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
              +  ++E+   + D   F+ II A  +  + +K  ++   M  R
Sbjct: 461 ALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIAR 506



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 6/229 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--CKPDVYTY 68
           ++A +L  VM+   +KP V  Y +L+  Y    L+DE         S++     PDV  Y
Sbjct: 284 KEAKILLAVMMKACIKPDVFTYNSLIDGYF---LVDEVKHAKYVFYSMAQRGVTPDVQCY 340

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I    K    D    +  EM +  +    VTYN++IDG  K    E   +    M E
Sbjct: 341 TNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKE 400

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G   PD+++   ++     SG +E  ++ +      G   ++    +L     +AG +D
Sbjct: 401 QG-IQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFD 459

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
           +   +   M+ +   P  VT++I+I    +    +K E+  ++M  RG+
Sbjct: 460 EALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGL 508



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 119/279 (42%), Gaps = 9/279 (3%)

Query: 63  PDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEE 118
           PD+ T SILI   C + H   L   + A +   G   +A+T NT+I G    G+ KK   
Sbjct: 90  PDLCTLSILINCFCHQAH-ITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKK--- 145

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F   + + G   D  +  ++I+    +G  + + +   +     VK D+   N + 
Sbjct: 146 -ALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTII 204

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            S  +  +      V   M  +   P VVTY  +I  F   GH+++      +MK + + 
Sbjct: 205 NSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNIN 264

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN  T+  L+ A SK G + +   +L  +  + +  D   +N +I  Y    +V+    +
Sbjct: 265 PNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYV 324

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           F +M +R   PD   +  MI       M + A +L  +M
Sbjct: 325 FYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEM 363



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/260 (19%), Positives = 117/260 (45%), Gaps = 3/260 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  + ++ ++ S      +  +  +  +    GI     T + +I+ +          S 
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ +++ G  HP+  TLN++I      G I+K   ++++    G + D  +   L     
Sbjct: 115 FANILKRGF-HPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLC 173

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G    +  ++  ++     P VV YN +I +  K   +    + + +M  +G+ P+ +
Sbjct: 174 KTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVV 233

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+  +   G + +  S+L +++  ++  +   FN +I A  + G + K  ++ L +
Sbjct: 234 TYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKM-KEAKILLAV 292

Query: 303 KERHCV-PDNITFATMIQAY 321
             + C+ PD  T+ ++I  Y
Sbjct: 293 MMKACIKPDVFTYNSLIDGY 312



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 36/235 (15%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           +N I+      K +  + S F    E  G  PD+ TL+ +I+ + +  +I          
Sbjct: 60  FNNILSSLVNNKHYPTVISLFKQF-EPNGITPDLCTLSILINCFCHQAHI---------- 108

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
                          T ++          SV   + KR F P  +T N +I+     G I
Sbjct: 109 ---------------TLAF----------SVFANILKRGFHPNAITLNTLIKGLCFRGEI 143

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           +K   +  ++  +G + + ++Y +L++   K G    V  +LR++E   V  D   +N I
Sbjct: 144 KKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTI 203

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           I++  +   +    +++  M  +   PD +T+ T+I  +  +G  + A +L N+M
Sbjct: 204 INSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEM 258


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 147/300 (49%), Gaps = 2/300 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P V  Y AL++ + +   +D+A   ++ M+S  D  PD  TY+I+I S     + DL  
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRS-KDFSPDTVTYNIMIGSLCSRGKLDLAL 213

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           K+L ++     + + +TY  +I+        +E       M+ S G  PD+FT N++I  
Sbjct: 214 KVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEML-SRGLKPDMFTYNTIIRG 272

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
               G +++  +      L G + D+ + NIL ++    G +++   +M  M      P 
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           VVTY+I+I T  + G IE+     K MK +G+ P++ +Y  L++A+ + G +      L 
Sbjct: 333 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 392

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            + +   + D   +N +++   + G  ++  E+F  + E  C P++ ++ TM  A  + G
Sbjct: 393 TMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 149/320 (46%), Gaps = 2/320 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           +LSD  +P+V  YT L+ A    G +DEA   +++M S    KPD++TY+ +I+   K  
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS-RGLKPDMFTYNTIIRGMCKEG 277

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             D   +++  +   G E   ++YN ++       K+EE E   + M  S  C P++ T 
Sbjct: 278 MVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMF-SEKCDPNVVTY 336

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           + +I+     G IE+           G+  D  + + L  ++ R G  D     ++ M  
Sbjct: 337 SILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P +V YN V+ T  K G  ++  E F K+   G  PNS +Y ++ SA   +G  ++
Sbjct: 397 DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIR 456

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              ++ ++ ++ +  D   +N +IS   + G V++  EL + M+     P  +T+  ++ 
Sbjct: 457 ALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLL 516

Query: 320 AYNALGMTEAAQNLENKMIA 339
            +      E A N+   M+ 
Sbjct: 517 GFCKAHRIEDAINVLESMVG 536



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 145/322 (45%), Gaps = 3/322 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L E M+  G  P V + T L+  +     + +A   +  ++     +PDV+ Y+ LI   
Sbjct: 111 LLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG--QPDVFAYNALINGF 168

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K +R D   ++L  M         VTYN +I       K +      + ++ S  C P 
Sbjct: 169 CKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL-SDNCQPT 227

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T   +I A    G +++  K  +E    G+K D+ T N + +   + GM D+   ++ 
Sbjct: 228 VITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVR 287

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            ++ +   P V++YNI++      G  E+ E+   KM      PN +TY  L++   + G
Sbjct: 288 NLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDG 347

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I +  ++L+ ++   +  D   ++ +I+A+ + G ++   E   TM    C+PD + + 
Sbjct: 348 KIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN 407

Query: 316 TMIQAYNALGMTEAAQNLENKM 337
           T++      G  + A  +  K+
Sbjct: 408 TVLATLCKNGKADQALEIFGKL 429



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 112/245 (45%), Gaps = 2/245 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+   L   M S+   P+V  Y+ L++   + G ++EA + +  MK      PD Y+Y  
Sbjct: 315 EEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE-KGLTPDAYSYDP 373

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI +  +  R D+  + L  M   G     V YNT++    K  K ++    F  + E G
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVG 433

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P+  + N+M SA  +SG+  +      E    G+  D  T N +     R GM D+ 
Sbjct: 434 -CSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEA 492

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M+   F P+VVTYNIV+  F KA  IE      + M   G +PN  TY  L+  
Sbjct: 493 FELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEG 552

Query: 251 YSKAG 255
              AG
Sbjct: 553 IGFAG 557



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 120/277 (43%), Gaps = 2/277 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV   + LIK            +++  +   G +     YN +I+G+ K  + ++    
Sbjct: 122 PDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRV 180

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M  S    PD  T N MI +  + G ++   K  N+      +  + T  IL ++  
Sbjct: 181 LDRM-RSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATM 239

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  D+   +MD M  R   P + TYN +I    K G +++  E  + ++ +G +P+ I
Sbjct: 240 LEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVI 299

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y  L+ A    G   + + ++ ++ +     +   ++ +I+   + G +E+   L   M
Sbjct: 300 SYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 359

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           KE+   PD  ++  +I A+   G  + A      MI+
Sbjct: 360 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 1/211 (0%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G +PD+     +I  +    NI K  +        G + D+   N L   + +    D  
Sbjct: 119 GYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDA 177

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             V+D M+ + F P  VTYNI+I +    G ++   +   ++     +P  ITY  L+ A
Sbjct: 178 TRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEA 237

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G + +   ++ ++ +  +  D   +N II    + G V++  E+   ++ +   PD
Sbjct: 238 TMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPD 297

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            I++  +++A    G  E  + L  KM + K
Sbjct: 298 VISYNILLRALLNQGKWEEGEKLMTKMFSEK 328


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 154/340 (45%), Gaps = 3/340 (0%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    ++A  + E+M    + P +  Y  L++    +G + E    ++ MKS+   +
Sbjct: 284 GYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLK-LQ 342

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TY+ LI  C +        K++ +M   G++ + VT+N  +    K +K E +   
Sbjct: 343 PDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRK 402

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              +V+  G  PDI T +++I AY   G++    +   E    G+K +  TLN +  +  
Sbjct: 403 VKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALC 462

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    D+  ++++   KR F    VTY  +I  F +   +EK  E + +MK   + P   
Sbjct: 463 KERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVS 522

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T+ SL+      G          ++  S ++ D   FN II  Y + G VEK  E +   
Sbjct: 523 TFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNES 582

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
            +    PDN T   ++      GMTE A N  N +I  +E
Sbjct: 583 IKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEERE 622



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 166/349 (47%), Gaps = 13/349 (3%)

Query: 2   VMLGKCKQPEQASL-----LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
           +++G  + P   S+     +F+ M+  G+  +V  +  LV+ Y   G L++A   +  M 
Sbjct: 172 LLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMV 231

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           S     PD  TY+ ++K+ +K  R   ++++L +M   G+  + VTYN ++ GY K    
Sbjct: 232 SEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSL 291

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +E       M ++    PD+ T N +I+   N+G++ +  +  +    + ++ D+ T N 
Sbjct: 292 KEAFQIVELMKQT-NVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNT 350

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-- 234
           L       G+  + R +M+ M+        VT+NI ++   K    EK E   +K+K   
Sbjct: 351 LIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKE---EKREAVTRKVKELV 407

Query: 235 --RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
              G  P+ +TY +L+ AY K G +     ++R++    + ++T   N I+ A  +   +
Sbjct: 408 DMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKL 467

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           ++   L  +  +R  + D +T+ T+I  +      E A  + ++M  +K
Sbjct: 468 DEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVK 516



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 139/315 (44%), Gaps = 5/315 (1%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF-HRFDL-- 83
           PS  ++   +SAY   G    A      M  +   KP++ T + L+    ++   F +  
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLK-LKPNLLTCNTLLIGLVRYPSSFSISS 187

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             ++  +M  +G+  +  T+N +++GY    K E+       MV     +PD  T N+++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A    G +  +++   +    G+  +  T N L   Y + G   +   +++ M++    
Sbjct: 248 KAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVL 307

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P + TYNI+I     AG + +  E    MK   ++P+ +TY +L+    + GL ++   +
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKL 367

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQAYN 322
           + Q+EN  V  +    N  +    +    E +      + + H   PD +T+ T+I+AY 
Sbjct: 368 MEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYL 427

Query: 323 ALGMTEAAQNLENKM 337
            +G    A  +  +M
Sbjct: 428 KVGDLSGALEMMREM 442



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 9/246 (3%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G+K +      ++ A  +   LDEA + +N          +V TY  LI     F R + 
Sbjct: 446 GIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEV-TYGTLIMG---FFREEK 501

Query: 84  IEKILA---EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
           +EK L    EM  + I  +  T+N++I G     K E     F  + ESG   PD  T N
Sbjct: 502 VEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESG-LLPDDSTFN 560

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           S+I  Y   G +EK  ++YNE      K D  T NIL     + GM +K  +  + + + 
Sbjct: 561 SIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEE 620

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
               TV TYN +I  F K   +++  +   +M+ +G++P+  TY S +S   + G + + 
Sbjct: 621 REVDTV-TYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSET 679

Query: 261 DSILRQ 266
           D +L++
Sbjct: 680 DELLKK 685


>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
          Length = 792

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 148/334 (44%), Gaps = 2/334 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++  +A  L++ M   G+KPS+  Y +L+  Y + G +DEA    ++M       P
Sbjct: 405 LCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPD-KGFPP 463

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  TY+ L+K   K   FD    +L EM   G+ C   TYN +I+G     +  E++   
Sbjct: 464 NEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVDEML 523

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              + S G  P   T NS+I+ +  +G +      Y +    G+  +I T       Y R
Sbjct: 524 KRFL-SEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCR 582

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               D    ++ ++++    P +  YN  I+TF K G++ +   +   +   G+ P+   
Sbjct: 583 TNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTV 642

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S V+ Y    ++ +       +    V+ DT  +  +I  + + G+V    EL+  M 
Sbjct: 643 YNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYSEMM 702

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             H +PD+ TF  +       G  + A+ L + M
Sbjct: 703 ANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDM 736



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 150/381 (39%), Gaps = 46/381 (12%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS- 57
           M+M G C   E  +A  LF+ ++SDG+ P+   Y  L+      G+ DE +     M   
Sbjct: 296 MLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQ 355

Query: 58  --------------------------------VSDCKPDVYTYSILIKSCTKFHRFDLIE 85
                                           V    PDV+TY  LI    K  +     
Sbjct: 356 GLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTGVPDVFTYGCLIHWLCKHQKLHEAV 415

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +  +M   G++ S VTY++++ GY +  + +E    +S M + G   P+  T  +++  
Sbjct: 416 NLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKG-FPPNEVTYTTLMKG 474

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV-MDFMQKRF--- 201
           Y      +      NE    GV     T NIL       G+Y   R   +D M KRF   
Sbjct: 475 YIKKKAFDNAYALLNEMRQNGVSCGDYTYNILIN-----GLYMVNRVCEVDEMLKRFLSE 529

Query: 202 -FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
            F PT +TYN +I  F KAG +      +++M+ +G+ PN +TY S +  Y +       
Sbjct: 530 GFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTNCCDLA 589

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +L  V    +  D   +N  I  + + G++ +     + + +    PD   + + +  
Sbjct: 590 VKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTG 649

Query: 321 YNALGMTEAAQNLENKMIAMK 341
           Y  L M   A      MI  +
Sbjct: 650 YKNLKMMAEASKFYYSMIKQR 670



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 143/321 (44%), Gaps = 5/321 (1%)

Query: 2   VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD- 60
           V++   +  E   L  +++L+ G K  V + T L+  Y   G + +A    +++  VSD 
Sbjct: 264 VLVKVGRMDEALRLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEV--VSDG 321

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P   TY +LIK C      D   K+  +M   G+  S   +N +I G  + K++++  
Sbjct: 322 VTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLLRDKRWKDAI 381

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                +V++G   PD+FT   +I        + +    +++    GVK  I T + L   
Sbjct: 382 GLLELVVDTG--VPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLG 439

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y   G  D+   +   M  + F P  VTY  +++ + K    +       +M+  G+   
Sbjct: 440 YCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEMRQNGVSCG 499

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY  L++       + +VD +L++  +   +  T  +N II+ + +AG +     ++ 
Sbjct: 500 DYTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYR 559

Query: 301 TMKERHCVPDNITFATMIQAY 321
            M+++   P+ +T+ + I  Y
Sbjct: 560 QMRKKGITPNIVTYTSFIDGY 580



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 112/267 (41%), Gaps = 2/267 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + +  LS+G  P+   Y ++++ + ++G++  AF     M+      P++ TY+  I   
Sbjct: 522 MLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRK-KGITPNIVTYTSFIDGY 580

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            + +  DL  K+L  +   GI+     YN  ID + K          F  ++   G  PD
Sbjct: 581 CRTNCCDLAVKLLIYVRRDGIQPDIAAYNAFIDTFCKQGNMSR-ALHFLVLLLKDGLTPD 639

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +   NS ++ Y N   + +  K+Y       V AD +    L   + + G       +  
Sbjct: 640 VTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFSKVGNVAFALELYS 699

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M      P   T+  +     ++G I+  +     M+   + PN +TY  L++A  + G
Sbjct: 700 EMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDG 759

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCI 282
            + +   +  ++ +S V+ D   ++ +
Sbjct: 760 KLQEAFQLHDEMLSSGVVPDDTTYDIL 786



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/337 (19%), Positives = 141/337 (41%), Gaps = 2/337 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V   +      A  LF+ M   G      +Y  ++ A  + G+  +A    ++M   + 
Sbjct: 157 LVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRLFDEMAG-AG 215

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KPD   Y+I I    K    D   ++L +M   G E   +TY++++D   K  + +E  
Sbjct: 216 VKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVGRMDEAL 275

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M+ + G   D+     ++  Y   G + K    ++E    GV     T  +L K 
Sbjct: 276 RLKDQMLLATGKKMDVVLATMLMHGYCLHGEVGKALDLFDEVVSDGVTPTNVTYGVLIKG 335

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               GM D+   +   M ++    +   +N+VI+   +    +      + +   G+ P+
Sbjct: 336 CDAEGMSDETYKLCRQMIEQGLLLSTYEFNLVIKGLLRDKRWKDAIGLLELVVDTGV-PD 394

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             TY  L+    K   + +  ++  +++ + V      ++ ++  Y + G +++  +L+ 
Sbjct: 395 VFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYS 454

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M ++   P+ +T+ T+++ Y      + A  L N+M
Sbjct: 455 EMPDKGFPPNEVTYTTLMKGYIKKKAFDNAYALLNEM 491



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 10/221 (4%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +S MV + G  PD  +   ++       +       ++E    G  AD +  +++ ++  
Sbjct: 138 YSRMV-TRGVVPDAKSRTDLLVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACV 196

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R GM+     + D M      P    Y I I    K    ++  +   KM+  G +P  +
Sbjct: 197 RGGMHCDAVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWEL 256

Query: 243 TYCSLVSAYSKAG-----LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           TY S+V    K G     L +K   +L   +  DV+L T     ++  Y   G+V K  +
Sbjct: 257 TYSSVVDVLVKVGRMDEALRLKDQMLLATGKKMDVVLAT----MLMHGYCLHGEVGKALD 312

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           LF  +      P N+T+  +I+  +A GM++    L  +MI
Sbjct: 313 LFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMI 353



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 39/211 (18%)

Query: 7   CKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CKQ   +  L    ++L DGL P V VY + V+ Y    ++ EA                
Sbjct: 616 CKQGNMSRALHFLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEA---------------- 659

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
                      +KF+   + ++++A+            Y T+IDG+ K          +S
Sbjct: 660 -----------SKFYYSMIKQRVVADTE---------IYTTLIDGFSKVGNVAFALELYS 699

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+ +    PD  T  ++      SG+I+  ++  ++   + V  +I T N+L  +  R 
Sbjct: 700 EMM-ANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRD 758

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           G   +   + D M      P   TY+I+  T
Sbjct: 759 GKLQEAFQLHDEMLSSGVVPDDTTYDILPRT 789


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 146/313 (46%), Gaps = 5/313 (1%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P V  Y A+V+ Y  +G LD A   + DM      +PD YTY+ LI+      R     
Sbjct: 121 EPDVMAYNAMVAGYCVTGQLDAARRLVADMPM----EPDSYTYNTLIRGLCGRGRTGNAL 176

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +L +M   G     VTY  +++   K   +++       M  + GC PDI T N +++ 
Sbjct: 177 VVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEM-RAKGCAPDIITYNVVVNG 235

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
               G ++   ++       G + +  + NI+ K    A  ++    +M  M ++ + P 
Sbjct: 236 ICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPN 295

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           VVT+N++I    + G +E   E   ++   G  PNS++Y  ++ A+ K   + +  + + 
Sbjct: 296 VVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVE 355

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            + +     D   +N +++A  + G+V+   EL   +K++ C P  I++ T+I      G
Sbjct: 356 LMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAG 415

Query: 326 MTEAAQNLENKMI 338
            T+ A  L N+M+
Sbjct: 416 KTKEALELLNEMV 428



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 157/335 (46%), Gaps = 4/335 (1%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++   CK+   +QA  L + M + G  P +  Y  +V+   Q G +D+A   +  + S 
Sbjct: 196 ILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPS- 254

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P+  +Y+I++K      R++  EK++AEMS  G   + VT+N +I    + +   E
Sbjct: 255 HGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCR-RGLVE 313

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                   +   GC P+  + N ++ A+     +++   +       G   DI + N L 
Sbjct: 314 PAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLL 373

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +  R G  D    ++  ++ +   P +++YN VI+   KAG  ++  E   +M  +G++
Sbjct: 374 TALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQ 433

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ ITY ++ S   +   I +      +V++  +  +T  +N I+    +  +     +L
Sbjct: 434 PDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDL 493

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           F+ M    C+P+  T+  +I+     G+ + A+ L
Sbjct: 494 FIYMISNGCMPNESTYTILIEGLTYEGLVKEAREL 528



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 142/329 (43%), Gaps = 14/329 (4%)

Query: 11  EQASLLFEVMLSDGLKPSV--DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           E+A  L E M   GL+PS       AL+     SG   EA       + ++ C+PDV  Y
Sbjct: 76  EEALRLVESM--SGLEPSAAPGPCAALIKKLCASGRTAEA------RRVLAACEPDVMAY 127

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + ++       + D   +++A+M    +E  + TYNT+I G     +          M+ 
Sbjct: 128 NAMVAGYCVTGQLDAARRLVADMP---MEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLR 184

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             GC PD+ T   ++ A       ++  K  +E    G   DI T N++     + G  D
Sbjct: 185 R-GCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVD 243

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
                +  +      P  V+YNIV++    A   E  E+   +M  +G  PN +T+  L+
Sbjct: 244 DAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLI 303

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           S   + GL+     +L Q+       ++  +N I+ A+ +   +++       M  R C 
Sbjct: 304 SFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCY 363

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKM 337
           PD +++ T++ A    G  +AA  L +++
Sbjct: 364 PDIVSYNTLLTALCRGGEVDAAVELLHQL 392


>gi|298711148|emb|CBJ32373.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 962

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 157/338 (46%), Gaps = 12/338 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G  ++ EQ  +L  +    G++P+   Y+A+V A    G    A  T+++M+       D
Sbjct: 426 GDWERAEQ--MLVGMQKEHGVEPNRFCYSAVVKALANGGQWKRALETLDEMRECG-LSAD 482

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT-----YNTIIDGYGKAKKFEEM 119
              Y+  I +C KF ++   EK L  +S L  E   +      YN  I   GKAK+ E +
Sbjct: 483 PVVYTAAIGACEKFGQW---EKALDTLSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGI 539

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +   + M ++ G  PD +T  +M+ A G  G+ E+      E    GV+ +    N L  
Sbjct: 540 KDLVATM-KASGLKPDEYTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRVVYNTLIA 598

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           S  +    +K   +++ M++    P V TY  ++    +     + E    +M+  G+KP
Sbjct: 599 SVLKGEQMEKADDILNRMREGGVPPDVTTYTTIMSGCKRESDWRRAEALLSEMESFGVKP 658

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           NS T  +++  Y  AG + +  ++  Q + S +++D   FN ++    +  D E + ELF
Sbjct: 659 NSRTLTAVLKVYGDAGEVERALALFEQYDASGMVMDVICFNTLMGPVLKKDDPETVLELF 718

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             M+ R   PD++T + +++A    G  E A  L  KM
Sbjct: 719 SRMESRGVEPDSLTMSLVLRAAEQAGAAEWAWLLMEKM 756



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 2/233 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK KQ E    L   M + GLKP    Y A++ A G  G  +E++S + +M+     +P
Sbjct: 530 LGKAKQMEGIKDLVATMKASGLKPDEYTYAAMMRASGIDGSWEESWSMLVEMEQAG-VRP 588

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +   Y+ LI S  K  + +  + IL  M   G+     TY TI+ G  +   +   E+  
Sbjct: 589 NRVVYNTLIASVLKGEQMEKADDILNRMREGGVPPDVTTYTTIMSGCKRESDWRRAEALL 648

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M ES G  P+  TL +++  YG++G +E+    + +++  G+  D+   N L     +
Sbjct: 649 SEM-ESFGVKPNSRTLTAVLKVYGDAGEVERALALFEQYDASGMVMDVICFNTLMGPVLK 707

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
               + +  +   M+ R   P  +T ++V+    +AG  E      +KM+  G
Sbjct: 708 KDDPETVLELFSRMESRGVEPDSLTMSLVLRAAEQAGAAEWAWLLMEKMREEG 760



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 128/277 (46%), Gaps = 5/277 (1%)

Query: 46  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTK--FHRFDLIEKILAEMSYLGIECSAVTY 103
           D A   + +MK     +PD+ TY  L+ + +       D++ ++   ++  G++ +++TY
Sbjct: 357 DFALGLMEEMKR-EGVEPDIITYGSLMSALSPRGLAGADIVLELFETLAKSGLKPNSITY 415

Query: 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
            + I  YG    +E  E     M +  G  P+ F  ++++ A  N G  ++  +  +E  
Sbjct: 416 VSAIRAYGDKGDWERAEQMLVGMQKEHGVEPNRFCYSAVVKALANGGQWKRALETLDEMR 475

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM--QKRFFFPTVVTYNIVIETFGKAGH 221
             G+ AD         +  + G ++K    +  +  +K      +  YN  I   GKA  
Sbjct: 476 ECGLSADPVVYTAAIGACEKFGQWEKALDTLSKLVSEKPPMRSLMWGYNAAISALGKAKQ 535

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           +E +++    MK  G+KP+  TY +++ A    G   +  S+L ++E + V  +   +N 
Sbjct: 536 MEGIKDLVATMKASGLKPDEYTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRVVYNT 595

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +I++  +   +EK  ++   M+E    PD  T+ T++
Sbjct: 596 LIASVLKGEQMEKADDILNRMREGGVPPDVTTYTTIM 632



 Score = 41.2 bits (95), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 2/157 (1%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIE-KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G HP +FT N +I+A   S     ++    ++    G+K D  T   + K          
Sbjct: 155 GAHPTVFTYNLLIAALARSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAM 214

Query: 190 MRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           MR+V++  +           Y+ V+  +   G  E       +M    +  +  TYC+ +
Sbjct: 215 MRAVLEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAM 274

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           +A  +AG  M+  + L ++    V  +T  +N +I A
Sbjct: 275 NACKEAGKWMQAAAFLPRMREDGVPPNTIAYNTVIGA 311


>gi|297802950|ref|XP_002869359.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315195|gb|EFH45618.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 906

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 143/292 (48%), Gaps = 8/292 (2%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           ++ +V  Y ++G L+EA S +  M    D  PDVY +  +++   K    D ++ +   +
Sbjct: 598 FSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDMLRIYQKCDLQDKLQHLYYRI 657

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
              GI      YN +I+   +A   +E+  +F  M+  G   P+  T N ++  YG +  
Sbjct: 658 QKSGIHWDQEMYNCVINCCARALPLDELSRTFEEMIRYGFT-PNTVTFNVLLDVYGKA-- 714

Query: 152 IEKMEKWYNEFNLMGVK---ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
             K+ K  NE  L+  +    D+ + N +  +YG+   +  M S +  MQ   F  ++  
Sbjct: 715 --KLFKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKDFTNMSSAIKNMQFDGFSVSLEA 772

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +++ +GK   +EK     K+MK     P+  TY  +++ Y + G I +V  +L++++
Sbjct: 773 YNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVAGVLKELK 832

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            S +  D   +N +I AYG  G VE+   L   M+ ++  PD +T+  ++ A
Sbjct: 833 ESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGKNITPDKVTYTNLVTA 884



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 147/304 (48%), Gaps = 7/304 (2%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y+++++ Y +  L ++A   IN MK     +  +  + +++ + ++  + +  E +L  M
Sbjct: 284 YSSMITIYTRLRLYEKAEEVINLMKQ-DRVRLKLENWLVMLNAYSQQGKMEQAESVLISM 342

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
              G   + + YNT+I GYGK  K E  +S F  + + G   PD  +  SMI  +G + N
Sbjct: 343 EAAGFAPNIIAYNTLITGYGKVSKMEAAKSLFHRLSDIG-LEPDETSYRSMIEGWGRADN 401

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD-KMRSVMDFMQKRFFFPTVVTYN 210
            E+   +Y E    G K +   L  L     + G  D  ++++ D       +P+++   
Sbjct: 402 YEEANHYYQELKRCGYKPNSSNLFTLINLQAKYGDRDGAIKTIEDMTSIGCQYPSIL--G 459

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           I+++ + K G I+ +    K   H  ++ N  ++  LV AY K G++    ++LR+ +  
Sbjct: 460 IILQAYEKVGKIDVVPYLLKGSFHNHIRLNQTSFSILVMAYIKHGMVDDCLALLREKKWR 519

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELF-LTMKERHCVPDNITFATMIQAYNALGMTEA 329
           D   ++  ++ +I +  ++G +    +L+  TM+    +  +IT +TMI  Y  +G    
Sbjct: 520 DSAFESHLYHLLICSCKESGQLTDAVKLYNHTMESDEEINLHIT-STMIDIYTVMGEFGE 578

Query: 330 AQNL 333
           A+ L
Sbjct: 579 AEKL 582



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 3/248 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC   ++   L+  +   G+    ++Y  +++   ++  LDE   T  +M       P+ 
Sbjct: 643 KCDLQDKLQHLYYRIQKSGIHWDQEMYNCVINCCARALPLDELSRTFEEMIRYG-FTPNT 701

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            T+++L+    K   F  + ++       G+    ++YNTII  YGK K F  M S+   
Sbjct: 702 VTFNVLLDVYGKAKLFKKVNELFLLAKRHGV-VDVISYNTIIAAYGKNKDFTNMSSAIKN 760

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M +  G    +   N+++ AYG    +EK               D  T NI+   YG  G
Sbjct: 761 M-QFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQG 819

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D++  V+  +++    P + +YN +I+ +G  G +E+     K+M+ + + P+ +TY 
Sbjct: 820 WIDEVAGVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGKNITPDKVTYT 879

Query: 246 SLVSAYSK 253
           +LV+A  K
Sbjct: 880 NLVTALRK 887



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 108/229 (47%), Gaps = 7/229 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP--DVYTY 68
           ++ S  FE M+  G  P+   +  L+  YG++ L    F  +N++  ++      DV +Y
Sbjct: 683 DELSRTFEEMIRYGFTPNTVTFNVLLDVYGKAKL----FKKVNELFLLAKRHGVVDVISY 738

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I +  K   F  +   +  M + G   S   YNT++D YGK K+ E+  S    M +
Sbjct: 739 NTIIAAYGKNKDFTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKK 798

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           S    PD +T N MI+ YG  G I+++     E    G+  D+ + N L K+YG  GM +
Sbjct: 799 STSG-PDHYTYNIMINIYGEQGWIDEVAGVLKELKESGLGPDLCSYNTLIKAYGIGGMVE 857

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
           +   ++  M+ +   P  VTY  ++    K     +  ++   MK  G+
Sbjct: 858 EAVGLVKEMRGKNITPDKVTYTNLVTALRKNDEFLEAIKWSLWMKQMGI 906



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 154/327 (47%), Gaps = 17/327 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +  +M  D ++  ++ +  +++AY Q G +++A S +  M++ +   P++  Y+ 
Sbjct: 298 EKAEEVINLMKQDRVRLKLENWLVMLNAYSQQGKMEQAESVLISMEA-AGFAPNIIAYNT 356

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  + +  + +   +S +G+E    +Y ++I+G+G+A  +EE    +  +   G
Sbjct: 357 LITGYGKVSKMEAAKSLFHRLSDIGLEPDETSYRSMIEGWGRADNYEEANHYYQELKRCG 416

Query: 131 --GCHPDIFTLNSMISAYGN-SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
                 ++FTL ++ + YG+  G I+ +E    +   +G +     L I+ ++Y + G  
Sbjct: 417 YKPNSSNLFTLINLQAKYGDRDGAIKTIE----DMTSIGCQYP-SILGIILQAYEKVGKI 471

Query: 188 DKMRSVMDFMQKRFFFPTV----VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           D    V+ ++ K  F   +     +++I++  + K G ++      ++ K R     S  
Sbjct: 472 D----VVPYLLKGSFHNHIRLNQTSFSILVMAYIKHGMVDDCLALLREKKWRDSAFESHL 527

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L+ +  ++G +     +      SD  ++    + +I  Y   G+  +  +L+L +K
Sbjct: 528 YHLLICSCKESGQLTDAVKLYNHTMESDEEINLHITSTMIDIYTVMGEFGEAEKLYLNLK 587

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAA 330
               V D I F+ +++ Y   G  E A
Sbjct: 588 SSGVVLDRIGFSIVVRMYVKAGSLEEA 614



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/311 (20%), Positives = 133/311 (42%), Gaps = 4/311 (1%)

Query: 16  LFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 74
            F+ M   G L+ +   Y+ ++   G+    + A   I ++      +     ++ +I +
Sbjct: 162 FFDWMRCKGKLEGNFGAYSLILRVLGRREEWNRAEDLIEELCGFQGFQQSFQVFNTVIYA 221

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
           CTK     L  K    M  LG+  +  T   ++  Y K    +E E +FS M +      
Sbjct: 222 CTKKGNVKLASKWFQMMLELGVRPNVATIGMLMGLYQKNWNVDEAEFAFSHMRKFEIVCE 281

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
             ++  SMI+ Y      EK E+  N      V+  ++   ++  +Y + G  ++  SV+
Sbjct: 282 SAYS--SMITIYTRLRLYEKAEEVINLMKQDRVRLKLENWLVMLNAYSQQGKMEQAESVL 339

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
             M+   F P ++ YN +I  +GK   +E  +  F ++   G++P+  +Y S++  + +A
Sbjct: 340 ISMEAAGFAPNIIAYNTLITGYGKVSKMEAAKSLFHRLSDIGLEPDETSYRSMIEGWGRA 399

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
               + +   ++++      ++     +I+   + GD +   +    M    C   +I  
Sbjct: 400 DNYEEANHYYQELKRCGYKPNSSNLFTLINLQAKYGDRDGAIKTIEDMTSIGCQYPSI-L 458

Query: 315 ATMIQAYNALG 325
             ++QAY  +G
Sbjct: 459 GIILQAYEKVG 469



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 100/236 (42%), Gaps = 36/236 (15%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
            Y+ I+   G+ +++   E     +    G        N++I A    GN++   KW+  
Sbjct: 178 AYSLILRVLGRREEWNRAEDLIEELCGFQGFQQSFQVFNTVIYACTKKGNVKLASKWFQM 237

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
              +GV+ ++ T+ +L       G+Y K  +V    +  F F  +  + IV E+      
Sbjct: 238 MLELGVRPNVATIGMLM------GLYQKNWNVD---EAEFAFSHMRKFEIVCES------ 282

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
                                 Y S+++ Y++  L  K + ++  ++   V L    +  
Sbjct: 283 ---------------------AYSSMITIYTRLRLYEKAEEVINLMKQDRVRLKLENWLV 321

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +++AY Q G +E+   + ++M+     P+ I + T+I  Y  +   EAA++L +++
Sbjct: 322 MLNAYSQQGKMEQAESVLISMEAAGFAPNIIAYNTLITGYGKVSKMEAAKSLFHRL 377


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 139/322 (43%), Gaps = 6/322 (1%)

Query: 20  MLSDG----LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           M++DG      P++  Y  +++ +   G +D+A++   DM       P+V TY+I+I   
Sbjct: 191 MMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTD-QGIPPNVVTYTIVIDGL 249

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K    D  E +  +M   G+  + VTY  +I GY    +++E+      M  + G  PD
Sbjct: 250 CKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEM-SAHGLEPD 308

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            FT   ++      G   +  K ++     G+K D+    I+   Y   G   +M S +D
Sbjct: 309 CFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLD 368

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M      P    +NIV   F K   I +  + F KM+ +G+ PN + Y +L+ A  K G
Sbjct: 369 LMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLG 428

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +   +    Q+ N  V  +   F  ++         EK GELF  M  +   P+ + F 
Sbjct: 429 RVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFN 488

Query: 316 TMIQAYNALGMTEAAQNLENKM 337
           T++      G    AQ L + M
Sbjct: 489 TIMCNLCTEGRVMKAQRLIDLM 510



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 149/332 (44%), Gaps = 2/332 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q ++A  LF  M   G+ P+V  YT ++    ++ ++D A      M      +P++ TY
Sbjct: 219 QVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMID-KGVRPNIVTY 277

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + LI       ++  + ++L EMS  G+E    TY  ++D   K  K  E    F +M+ 
Sbjct: 278 TCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIR 337

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G   PD+     ++  Y   G + +M  + +     G+  +    NI+  ++ +  M  
Sbjct: 338 KG-IKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIG 396

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   + + M+++   P VV Y  +I+   K G ++  E  F +M + G+ PN + + SLV
Sbjct: 397 EAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLV 456

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                     K   +  ++ N  +  +  FFN I+      G V K   L   M+     
Sbjct: 457 YGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTR 516

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           PD I++  +I+ +  +G T+ A  L + M+++
Sbjct: 517 PDIISYNALIRGHCLVGKTDEASKLLDIMLSV 548



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 142/341 (41%), Gaps = 4/341 (1%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G CK    ++A  +F+ M+  G++P++  YT L+  Y   G   E    + +M S 
Sbjct: 244 IVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEM-SA 302

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              +PD +TY +L+    K  +     K+   M   GI+     Y  I+ GY       E
Sbjct: 303 HGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSE 362

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           M S    MV   G  P+ +  N +  A+     I +    +N+    G+  ++     L 
Sbjct: 363 MHSFLDLMV-GNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLI 421

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +  + G  D      + M      P +V +  ++         EK  E F +M ++G+ 
Sbjct: 422 DALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIH 481

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN + + +++      G +MK   ++  +E      D   +N +I  +   G  ++  +L
Sbjct: 482 PNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKL 541

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              M      P+  T+ T++  Y   G  + A ++  +M++
Sbjct: 542 LDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLS 582



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 128/277 (46%), Gaps = 2/277 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L ++M   G +P +  Y AL+  +   G  DEA   ++ M SV   KP+  TY+ L
Sbjct: 502 KAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVG-LKPNECTYNTL 560

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +    +  R D    +  EM   GI    VTYNTI+ G  K ++F E +  +  M+ SG 
Sbjct: 561 LHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGK 620

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
               I+T N +++    +  +++  K +       ++ DI T NI+  +  + G  +   
Sbjct: 621 -QWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAM 679

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           ++   +      P V TY ++ E   + G +E+ +  F +M+  G  PNS+    LV   
Sbjct: 680 NLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRL 739

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
              G I +  + L +++  +  L+    + +IS + +
Sbjct: 740 LLRGDISRAGAYLSKIDEKNFSLEASTTSMLISLFSR 776



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 132/303 (43%), Gaps = 2/303 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  M   GL P+V  Y  L+ A  + G +D+A    N M +     P++  ++ L
Sbjct: 397 EAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMIN-EGVAPNIVVFTSL 455

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +       +++   ++  EM   GI  + V +NTI+       +  + +     M E  G
Sbjct: 456 VYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLM-ERVG 514

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PDI + N++I  +   G  ++  K  +    +G+K +  T N L   Y R G  D   
Sbjct: 515 TRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAY 574

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           SV   M      P VVTYN ++    K     + +E +  M   G + +  TY  +++  
Sbjct: 575 SVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGL 634

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           SK   + +   + + + + D+ +D   FN +I A  + G  E    LF T+     VPD 
Sbjct: 635 SKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDV 694

Query: 312 ITF 314
            T+
Sbjct: 695 TTY 697



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 133/296 (44%), Gaps = 2/296 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LF  M++ G+ P+V  +  ++      G + +A   I+ M+ V   +PD+ +Y+ 
Sbjct: 466 EKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGT-RPDIISYNA 524

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI+      + D   K+L  M  +G++ +  TYNT++ GY +  + ++  S F  M+ S 
Sbjct: 525 LIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEML-SN 583

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P + T N+++     +    + ++ Y      G +  I T NI+     +    D+ 
Sbjct: 584 GITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEA 643

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   +  +     ++T+NI+I    K G  E     F  +   G+ P+  TY  +   
Sbjct: 644 LKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAEN 703

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
             + G + + D +  ++E S    ++   N ++      GD+ + G     + E++
Sbjct: 704 LIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKIDEKN 759



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 135/329 (41%), Gaps = 41/329 (12%)

Query: 17  FEVMLSD---GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 73
           F  M+ D    + P V  Y+ LV  + + G L+  F+    +        DV   + L+K
Sbjct: 79  FNRMIRDCCSKVAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLK 138

Query: 74  SCTKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-- 130
                 R  + +  +L  MS LG   + V+YNT++ G+    + EE       M +    
Sbjct: 139 GLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVR 198

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P++ + N++I+ +   G ++K    YN F                            
Sbjct: 199 SCPPNLVSYNTVINGFFTEGQVDKA---YNLF---------------------------- 227

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              +D M  +   P VVTY IVI+   KA  +++ E  F++M  +G++PN +TY  L+  
Sbjct: 228 ---LD-MTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHG 283

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y   G   +V  +L+++    +  D   +  ++    + G   +  +LF +M  +   PD
Sbjct: 284 YLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPD 343

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
              +  ++  Y   G      +  + M+ 
Sbjct: 344 VSIYGIILHGYATKGALSEMHSFLDLMVG 372


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 150/319 (47%), Gaps = 5/319 (1%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML  G +PSV  YT L+ A  +S    EA + +++M++   C P++ TY+++I    +  
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRA-KGCTPNIVTYNVIINGMCREG 236

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R D  ++IL  +S  G +   V+Y T++ G   A+++++++  F+ MV+   C P+  T 
Sbjct: 237 RVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDK-KCVPNEVTF 295

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           + ++  +   G +E+  +   + +  G   +    NI+  +  + G  D     ++ M  
Sbjct: 296 DMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGM 355

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P  ++Y  V+    +AG  E  +E   +M  +   PN +T+ + +    + GLI +
Sbjct: 356 YGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQ 415

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              ++  +      +    +N ++  +   G V+   ELF  +    C P+ IT+ T++ 
Sbjct: 416 AIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP---CEPNTITYTTLLT 472

Query: 320 AYNALGMTEAAQNLENKMI 338
                   +AA  L  +MI
Sbjct: 473 GLCHAERLDAAAELLAEMI 491



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 143/323 (44%), Gaps = 5/323 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + + M + G  P++  Y  +++   + G +D+A   +N + S    +PD+ +Y+ ++K  
Sbjct: 209 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGF-QPDIVSYTTVLKGL 267

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               R+D ++ + AEM       + VT++ ++  + +    E        M +  GC P+
Sbjct: 268 CAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQH-GCTPN 326

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
               N +I+A    G ++    + N   + G   D  +   + +   RAG ++  + ++ 
Sbjct: 327 TTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLP 386

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M ++   P  VT+N  I    + G IE+  +  + M   G     +TY +LV  +   G
Sbjct: 387 EMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQG 446

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
              +VDS L    N     +T  +  +++    A  ++   EL   M ++ C  + +TF 
Sbjct: 447 ---RVDSALELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFN 503

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
            ++  +   G  E A  L N+M+
Sbjct: 504 VLVSFFCQKGFVEEAMELVNQMM 526



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 111/257 (43%), Gaps = 5/257 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           EQA  L E+M   G    +  Y ALV  +   G +D A    N++     C+P+  TY+ 
Sbjct: 414 EQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP----CEPNTITYTT 469

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+       R D   ++LAEM       +AVT+N ++  + +    EE     + M+E G
Sbjct: 470 LLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG 529

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P++ T N+++       N E+  +  +     GV  D  T + +     R    ++ 
Sbjct: 530 -CTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEA 588

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  +Q     P V  YN ++    K    ++  ++F  M   G  PN  TY  L+  
Sbjct: 589 IQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEG 648

Query: 251 YSKAGLIMKVDSILRQV 267
            +  GL+ +   +L ++
Sbjct: 649 LAHEGLLKEARYVLSEL 665



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/361 (19%), Positives = 157/361 (43%), Gaps = 34/361 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  + + M   G  P+  +   +++A  + G +D+A+  +N+M  +  C PD  +Y+ 
Sbjct: 309 ERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNM-GMYGCNPDTISYTT 367

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +++   +  R++  +++L EM       + VT+NT I    +    E+       M E  
Sbjct: 368 VLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEY- 426

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN-----------LMG------------- 166
           GC   I T N+++  +   G ++   + +N              L G             
Sbjct: 427 GCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTGLCHAERLDAAAEL 486

Query: 167 ----VKADIQ----TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
               ++ D      T N+L   + + G  ++   +++ M +    P ++T+N +++   K
Sbjct: 487 LAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITK 546

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
             + E+  E    +  +G+  ++ITY S+V   S+     +   +L  V++  +      
Sbjct: 547 DCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGM 606

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +N I+ A  +  + ++  + F  M    C+P+  T+  +I+     G+ + A+ + +++ 
Sbjct: 607 YNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELY 666

Query: 339 A 339
           A
Sbjct: 667 A 667



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 69/147 (46%)

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           RS    M +R   P+VVTY +++E   K+    +      +M+ +G  PN +TY  +++ 
Sbjct: 172 RSPCSTMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIING 231

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G +     IL ++ +     D   +  ++     A   + +  LF  M ++ CVP+
Sbjct: 232 MCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPN 291

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            +TF  +++ +   GM E A  +  +M
Sbjct: 292 EVTFDMLVRFFCRGGMVERAIQVLQQM 318


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 154/334 (46%), Gaps = 2/334 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K   +A  L+  M+S G+ P V  Y+AL+S +   G L++A    N M S  +  PDV
Sbjct: 208 KVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMIS-EEINPDV 266

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YT+SIL+    K  R    + +LA M   GI+   VTY +++DGY   K+  + +S F+ 
Sbjct: 267 YTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNT 326

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M + GG   ++ + N MI+ +     +++    + E +   +  D+ T N L     ++G
Sbjct: 327 MAQ-GGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSG 385

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
                  ++D M  R      +TYN +++   K   ++K      KMK  G++P+  TY 
Sbjct: 386 KISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYT 445

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+    K G +    +I   +      +    +  +I  +      +K   L   M++ 
Sbjct: 446 ILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDN 505

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            C+P+  T+  +I +       + A+ L  +MIA
Sbjct: 506 GCIPNAKTYEIIILSLFEKDENDMAEKLLREMIA 539



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 158/335 (47%), Gaps = 4/335 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + ++ L  +   DG  ++P+V +Y  ++ +  +  L++EAF   ++M S     
Sbjct: 170 GLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVS-KGIS 228

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TYS LI       + +    +  +M    I     T++ ++DG+ K  + +E ++ 
Sbjct: 229 PDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNV 288

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M++  G  PD+ T  S++  Y     + K +  +N     GV A++Q+ NI+   + 
Sbjct: 289 LAMMMKQ-GIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFC 347

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    D+  ++   M  +   P VVTYN +I+   K+G I    +   +M  RG+  + I
Sbjct: 348 KIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKI 407

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S++ A  K   + K  ++L ++++  +  D   +  +I    + G ++    +F  +
Sbjct: 408 TYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDL 467

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +       T+  MIQ +    + + A  L +KM
Sbjct: 468 LVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKM 502



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 145/327 (44%), Gaps = 6/327 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN--DMKSVSDCKPDVY 66
           Q  QA    + +++ G   +   Y  L++   + G    A   +   D K V   +P+V 
Sbjct: 141 QIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLV---QPNVV 197

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y+ +I S  K    +    + +EM   GI    VTY+ +I G+    K  +    F+ M
Sbjct: 198 MYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKM 257

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           + S   +PD++T + ++  +   G +++ +         G+K D+ T   L   Y     
Sbjct: 258 I-SEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQ 316

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
            +K +S+ + M +      V +YNI+I  F K   +++    FK+M  + + P+ +TY S
Sbjct: 317 VNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNS 376

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+    K+G I     ++ ++ +  V  D   +N I+ A  +   V+K   L   MK+  
Sbjct: 377 LIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEG 436

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNL 333
             PD  T+  +I      G  + AQN+
Sbjct: 437 IQPDMYTYTILIDGLCKGGRLKDAQNI 463



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 10/241 (4%)

Query: 2   VMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C  KQ  +A  +F  M   G+  +V  Y  +++ + +   +DEA +   +M    
Sbjct: 307 LMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMH--- 363

Query: 60  DCK---PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            CK   PDV TY+ LI    K  +     K++ EM   G+    +TYN+I+D   K  + 
Sbjct: 364 -CKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQV 422

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           ++  +  + M + G   PD++T   +I      G ++  +  + +  + G    + T  +
Sbjct: 423 DKAIALLTKMKDEG-IQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTV 481

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           + + +    ++DK  +++  M+     P   TY I+I +  +    +  E+  ++M  RG
Sbjct: 482 MIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARG 541

Query: 237 M 237
           +
Sbjct: 542 L 542



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/313 (18%), Positives = 139/313 (44%), Gaps = 4/313 (1%)

Query: 27  PSVDVYTALVSAYGQSGLLDEA--FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           P   + T+L S        DE    S+ N + +++   P ++ +  ++ S  K + +   
Sbjct: 17  PKFIISTSLYSQLHHHHQDDEHSLVSSFNRILNINPTPP-IFEFGKILGSLVKINCYQTA 75

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
             +  EM + GI    VT+N +I+ + +        S F+ +++ G   P+  TL ++I 
Sbjct: 76  ISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKG-YEPNAITLTTLIK 134

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
                G I +   ++++   +G   +      L     + G       ++  +  +   P
Sbjct: 135 GLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQP 194

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            VV YN +I++  K   + +  + + +M  +G+ P+ +TY +L+S +   G +     + 
Sbjct: 195 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLF 254

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++ + ++  D   F+ ++  + + G V++   +   M ++   PD +T+ +++  Y  +
Sbjct: 255 NKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLV 314

Query: 325 GMTEAAQNLENKM 337
                A+++ N M
Sbjct: 315 KQVNKAKSIFNTM 327



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 90/210 (42%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P IF    ++ +       +     + E    G+ +D+ T NIL   + + G      SV
Sbjct: 54  PPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSV 113

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
              + K+ + P  +T   +I+     G I +   +  K+   G   N + Y +L++   K
Sbjct: 114 FANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCK 173

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
            G       +LR+V+   V  +   +N II +  +   V +  +L+  M  +   PD +T
Sbjct: 174 VGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVT 233

Query: 314 FATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           ++ +I  +  LG    A  L NKMI+ + N
Sbjct: 234 YSALISGFCILGKLNDAIGLFNKMISEEIN 263


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 149/339 (43%), Gaps = 37/339 (10%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           +VSA  + G +DE    +  + S   C+PD+ +Y+ ++K      R+D +E+++ EM  +
Sbjct: 184 VVSAICEQGCVDEGVELLRKLPSFG-CEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRV 242

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE- 153
           G   +  T+NT+I    +   FE++  + S M E G C PD+    ++I      G+ E 
Sbjct: 243 GCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHG-CTPDLRMYATIIDGICKDGHHEV 301

Query: 154 ----------------------------KMEKWYNEFNLMG------VKADIQTLNILTK 179
                                         E+W    +L+          D  T NIL  
Sbjct: 302 ANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVD 361

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + + G+ D++  +++ M +    P V+TY  VI  F K G +++     K M   G KP
Sbjct: 362 FFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKP 421

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N+I+Y  ++    +A   +    ++  +     + +   FN +I+   + G VE+  EL 
Sbjct: 422 NTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELL 481

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M    C PD I+++T+I      G TE A  L N MI
Sbjct: 482 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMI 520



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 173/411 (42%), Gaps = 72/411 (17%)

Query: 2   VMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C  K+ +    L   M+  G  P+V  +  L++   ++GL ++    ++ M    
Sbjct: 219 VLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPE-H 277

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C PD+  Y+ +I    K    ++   IL+ M   G++ + V YNT++ G   A+++EE 
Sbjct: 278 GCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEA 337

Query: 120 ESSFSAMVESG----------------------------------GCHPDIFTLNSMISA 145
           E   + M +                                    GC PD+ T  ++I+ 
Sbjct: 338 EDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVING 397

Query: 146 YGNSGNIE-----------------------------KMEKWYNEFNLM------GVKAD 170
           +   G ++                             + E+W +   L+      G   +
Sbjct: 398 FCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPN 457

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
             T N L     + G+ ++   ++  M      P +++Y+ VI+  GKAG  E+  E   
Sbjct: 458 PVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLN 517

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
            M ++G+ PN+I Y S+ SA S+ G   K+  +   ++++ V  D   +N +IS+  +  
Sbjct: 518 VMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRW 577

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           + ++  + F  M    C+P+  T+  +I+   + G+   AQ+L +++ + +
Sbjct: 578 ETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCSRR 628



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 138/315 (43%), Gaps = 2/315 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           + P+   Y  +V +    GL+ +A + +++M  +  C        +++++  +   F   
Sbjct: 104 VPPNAYTYFPIVRSLCARGLIADALTVLDEMP-LRGCAATPPMCHVILEAACRGGGFRSA 162

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            + L  +   G    +   N ++    +    +E       +  S GC PDI + N+++ 
Sbjct: 163 VRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKL-PSFGCEPDIVSYNAVLK 221

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               +   + +E+   E   +G   ++ T N L     R G+++++   +  M +    P
Sbjct: 222 GLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTP 281

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            +  Y  +I+   K GH E   +   +M   G+KPN + Y +++     A    + + +L
Sbjct: 282 DLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLL 341

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++   D  LD   FN ++  + Q G V+++ EL   M E  C+PD IT+ T+I  +   
Sbjct: 342 AEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKE 401

Query: 325 GMTEAAQNLENKMIA 339
           G+ + A  L   M A
Sbjct: 402 GLVDEAVMLLKNMSA 416


>gi|413934890|gb|AFW69441.1| hypothetical protein ZEAMMB73_914225 [Zea mays]
          Length = 504

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 148/302 (49%), Gaps = 2/302 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M  DG+  +   YT L+ AY ++G L++++  + +M+     + D   YS+L++      
Sbjct: 149 MADDGVARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWG-IRLDTAGYSMLVRLYRDNG 207

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
            +     ++ EM  +G+E     Y+ +ID +GK  +  +    F  M  + G  PDI T 
Sbjct: 208 MWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKM-RAEGVRPDISTW 266

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N++I  +   GN+++  +++      G+  D +   ++    G  G +D+++ + D M  
Sbjct: 267 NALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMIISRLGEQGKWDEIKKLFDGMNN 326

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           R F  +   Y I+++ +G+ GH    ++    ++    +     +C + +AY++ GL  +
Sbjct: 327 RGFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAENTQLLPRVFCVIANAYAQQGLCEQ 386

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
             ++L+ +E      +    N +I+A+G AG   +   +F  +K+    PD +T+ T+++
Sbjct: 387 TVNVLQLMEEEGFEPNLVMLNSLINAFGTAGRHLEALAVFQHIKDSGMSPDVVTYTTLMK 446

Query: 320 AY 321
            +
Sbjct: 447 TF 448



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 116/241 (48%), Gaps = 10/241 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK  Q   A  +F+ M ++G++P +  + AL+  + + G +  A      M+      P
Sbjct: 238 FGKYGQLADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQE-EGMYP 296

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   + ++I    +  ++D I+K+   M+  G + S   Y  ++D YG+   F + +   
Sbjct: 297 DPKIFVMIISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQDCI 356

Query: 124 SAM-VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTK 179
           +A+  E+    P +F +  + +AY   G  E+     N   LM   G + ++  LN L  
Sbjct: 357 AALRAENTQLLPRVFCV--IANAYAQQGLCEQT---VNVLQLMEEEGFEPNLVMLNSLIN 411

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           ++G AG + +  +V   ++     P VVTY  +++TF +A   EK+ E +++M+  G  P
Sbjct: 412 AFGTAGRHLEALAVFQHIKDSGMSPDVVTYTTLMKTFMRAKKFEKVSEVYREMERAGCAP 471

Query: 240 N 240
           +
Sbjct: 472 D 472



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 129/290 (44%), Gaps = 6/290 (2%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           L  +   + DM++ S  +P    Y+ LI++ ++  R    E +L EM  LG    A  YN
Sbjct: 69  LARSLGLLADMQA-SGGRPSGSAYARLIRALSRAGRALEAEALLLEMRRLGPRPEAAHYN 127

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY--NEF 162
            +++G   A      +     M + G    +  T   ++ AY  +G +E  + W+   E 
Sbjct: 128 ALLEGLLAAAHLRLADLLLLQMADDGVAR-NRRTYTLLLGAYARAGRLE--DSWWVLGEM 184

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              G++ D    ++L + Y   GM+ K   ++  MQ+      V  Y+ +I+TFGK G +
Sbjct: 185 RRWGIRLDTAGYSMLVRLYRDNGMWKKATDLVMEMQEVGVELDVKIYSGLIDTFGKYGQL 244

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
                 F KM+  G++P+  T+ +L+  + + G + +       ++   +  D   F  I
Sbjct: 245 ADARRMFDKMRAEGVRPDISTWNALIQWHCRVGNMKRALRFFTSMQEEGMYPDPKIFVMI 304

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
           IS  G+ G  +++ +LF  M  R        +A ++  Y   G    AQ+
Sbjct: 305 ISRLGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQD 354



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 4/175 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV-SDCK 62
           LG+  + ++   LF+ M + G K S  VY  LV  YGQ G   +A   I  +++  +   
Sbjct: 308 LGEQGKWDEIKKLFDGMNNRGFKESGAVYAILVDIYGQYGHFRDAQDCIAALRAENTQLL 367

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V+   ++  +  +    +    +L  M   G E + V  N++I+ +G A +  E  + 
Sbjct: 368 PRVFC--VIANAYAQQGLCEQTVNVLQLMEEEGFEPNLVMLNSLINAFGTAGRHLEALAV 425

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           F  + +S G  PD+ T  +++  +  +   EK+ + Y E    G   D +   +L
Sbjct: 426 FQHIKDS-GMSPDVVTYTTLMKTFMRAKKFEKVSEVYREMERAGCAPDRKAREML 479



 Score = 44.7 bits (104), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 75/163 (46%)

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L ++  RAG   +  +++  M++    P    YN ++E    A H+   +    +M   G
Sbjct: 94  LIRALSRAGRALEAEALLLEMRRLGPRPEAAHYNALLEGLLAAAHLRLADLLLLQMADDG 153

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           +  N  TY  L+ AY++AG +     +L ++    + LDT  ++ ++  Y   G  +K  
Sbjct: 154 VARNRRTYTLLLGAYARAGRLEDSWWVLGEMRRWGIRLDTAGYSMLVRLYRDNGMWKKAT 213

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +L + M+E     D   ++ +I  +   G    A+ + +KM A
Sbjct: 214 DLVMEMQEVGVELDVKIYSGLIDTFGKYGQLADARRMFDKMRA 256


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 141/284 (49%), Gaps = 10/284 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--KPDVYTY 68
           E  +L  E  L+  +KP    Y AL+  Y +   L  A   +++M   S C   PD  TY
Sbjct: 281 EAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEM---SQCGVAPDEATY 337

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S+L+ + T+  R++    +L EM   G++ S+  ++ I+ G+     +++  +    M +
Sbjct: 338 SLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREM-Q 396

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           + G  PD    N MI  +G    +      +N+    G++ D+ T N L  ++ + G +D
Sbjct: 397 ASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHD 456

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   + + M++    P   TYNI+I   G+  H E +E    +MK +G+ PN ITY +LV
Sbjct: 457 RAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLV 516

Query: 249 SAYSKAGLIMK-VDSILRQVENSDVILDTP-FFNCIISAYGQAG 290
             Y ++G   + +D I  +   +D +  +P  ++ +++AY Q G
Sbjct: 517 DVYGRSGRYKEAIDCI--EAMKADGLKPSPTMYHALVNAYAQRG 558



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 151/335 (45%), Gaps = 1/335 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            +   P+ A  L     + GL P  +  TAL+SA G +G + EA +   +     + KP 
Sbjct: 239 ARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPR 298

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+ L+K   +       E++L EMS  G+     TY+ ++D Y +A ++E       
Sbjct: 299 TRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLK 358

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+ G  P  +  + +++ + + G+ +K      E    GV+ D    N++  ++G+ 
Sbjct: 359 EM-EADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKY 417

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
                     + M++    P VVT+N +I+   K G  ++  E F++M+     P + TY
Sbjct: 418 NCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTY 477

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +++   +      V+++L +++   ++ +   +  ++  YG++G  ++  +    MK 
Sbjct: 478 NIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKA 537

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
               P    +  ++ AY   G+ + A N+   M A
Sbjct: 538 DGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKA 572



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 153/319 (47%), Gaps = 5/319 (1%)

Query: 2   VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           V +   K  EQ   + + M   G+ P    Y+ LV AY ++G  + A   + +M++    
Sbjct: 310 VRIASLKNAEQ---VLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEA-DGV 365

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           KP  Y +S ++        +     +L EM   G+      YN +ID +GK         
Sbjct: 366 KPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMD 425

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           +F+ M E G   PD+ T N++I A+   G  ++  + + E           T NI+    
Sbjct: 426 AFNKMREEG-IEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLL 484

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G    ++ + +++  M+++   P ++TY  +++ +G++G  ++  +  + MK  G+KP+ 
Sbjct: 485 GEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSP 544

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             Y +LV+AY++ GL     ++++ ++   + +     N +I+A+G+   V +   +   
Sbjct: 545 TMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQF 604

Query: 302 MKERHCVPDNITFATMIQA 320
           M+E    PD IT+ T+++A
Sbjct: 605 MRENGLRPDVITYTTLMKA 623



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 148/305 (48%), Gaps = 10/305 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A +L + M +DG+KPS  V++ +++ +   G   +AF+ + +M++ S  +PD + Y++
Sbjct: 351 ESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQA-SGVRPDRHFYNV 409

Query: 71  LIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           +I +  K+    H  D   K+  E    GIE   VT+NT+ID + K  + +     F  M
Sbjct: 410 MIDTFGKYNCLGHAMDAFNKMREE----GIEPDVVTWNTLIDAHCKGGRHDRAAELFEEM 465

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
            ES  C P   T N MI+  G   + E +E   +E    G+  +I T   L   YGR+G 
Sbjct: 466 RESN-CPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGR 524

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           Y +    ++ M+     P+   Y+ ++  + + G  +      K MK  G++ + +   S
Sbjct: 525 YKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNS 584

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L++A+ +   +++  S+L+ +  + +  D   +  ++ A  +    +K+  ++  M    
Sbjct: 585 LINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSG 644

Query: 307 CVPDN 311
           C PD 
Sbjct: 645 CAPDR 649



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 139/323 (43%), Gaps = 43/323 (13%)

Query: 60  DCKPDVYTYSILIKSCTKFHRFD---LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           D  PD+ +YS L+ S           L+E++L ++    +E  A  ++ +I  + +A   
Sbjct: 185 DFLPDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAA-L 243

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLN 175
            +      A  ++ G  P    + ++ISA G +G + + E  + EF L G +K   +  N
Sbjct: 244 PDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYN 303

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L K Y R         V+D M +    P   TY+++++ + +AG  E      K+M+  
Sbjct: 304 ALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEAD 363

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ------- 288
           G+KP+S  +  +++ +   G   K  ++LR+++ S V  D  F+N +I  +G+       
Sbjct: 364 GVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHA 423

Query: 289 ----------------------------AGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
                                        G  ++  ELF  M+E +C P   T+  MI  
Sbjct: 424 MDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMI-- 481

Query: 321 YNALGMTEAAQNLENKMIAMKEN 343
            N LG  E  + +E  +  MKE 
Sbjct: 482 -NLLGEQEHWEGVEAMLSEMKEQ 503


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 148/305 (48%), Gaps = 2/305 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F+ M+  G+ P+V  Y  L+  +  +G L+       +M+  + C P+V TY+ +I + 
Sbjct: 190 IFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMER-NGCLPNVVTYNTIIDAY 248

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +     K+L  M+  G+  + ++YN +I+G  +  + +E       M +     PD
Sbjct: 249 CKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV-PD 307

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T N++I+ Y N GN  +    + E    G+  ++ T   L  S  +AG  ++    +D
Sbjct: 308 RVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLD 367

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ R   P   TY  +I+ F + G +++  +  K+M   G  P  ITY +L++ +   G
Sbjct: 368 QMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILG 427

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +     +L+++     I D   ++ IIS + +  ++EK  +L + M  +   PD  T++
Sbjct: 428 RMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYS 487

Query: 316 TMIQA 320
           ++IQ 
Sbjct: 488 SLIQG 492



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 146/318 (45%), Gaps = 1/318 (0%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
           S G  P V  Y A++ A  ++    +    I      S   P+VYTY+ILI+        
Sbjct: 160 SYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNL 219

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
           ++      EM   G   + VTYNTIID Y K +K  E       M   G  +P++ + N 
Sbjct: 220 EMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKG-LNPNLISYNV 278

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I+     G +++  +   E +      D  T N L   Y   G + +   +   M K  
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P VVTY  +I +  KAG++ +  E+  +M+ RG+ PN  TY +L+  +S+ G + +  
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            I++++  +        +N +I+ +   G +E    L   M ER  +PD ++++T+I  +
Sbjct: 399 QIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGF 458

Query: 322 NALGMTEAAQNLENKMIA 339
                 E A  L+ +M+A
Sbjct: 459 CRNQELEKAFQLKVEMVA 476



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 147/314 (46%), Gaps = 3/314 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLI 84
           K S  V+  +V +  +  L+++A S +N  KS     P V +Y+ ++ +  +  +   + 
Sbjct: 129 KSSSAVFDLVVKSCARVNLINKALSIVNLAKSYG-FMPGVLSYNAILDAVIRTKQSVKIA 187

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           E I  EM   G+  +  TYN +I G+  A   E M   F   +E  GC P++ T N++I 
Sbjct: 188 EGIFKEMVESGVSPNVYTYNILIRGFCTAGNLE-MGLFFFGEMERNGCLPNVVTYNTIID 246

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           AY     I +  K      L G+  ++ + N++     R G   +   +++ M KR + P
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVP 306

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
             VT+N +I  +   G+  +      +M   G+ PN +TY +L+++  KAG + +    L
Sbjct: 307 DRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFL 366

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            Q+ +  +  +   +  +I  + Q G +++  ++   M E    P  IT+  +I  +  L
Sbjct: 367 DQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCIL 426

Query: 325 GMTEAAQNLENKMI 338
           G  E A  L  +MI
Sbjct: 427 GRMEDASGLLQEMI 440



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 141/318 (44%), Gaps = 21/318 (6%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   GL P+   YT L+  + Q G L +A+  + +M   +   P + TY+ LI       
Sbjct: 369 MRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVE-NGFTPTIITYNALINGHCILG 427

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIF 137
           R +    +L EM   G     V+Y+TII G+ +    +E+E +F   VE  + G  PD+ 
Sbjct: 428 RMEDASGLLQEMIERGFIPDVVSYSTIISGFCRN---QELEKAFQLKVEMVAKGISPDVA 484

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T +S+I        + ++   + E   +G+  D  T   L  +Y   G  DK   + D M
Sbjct: 485 TYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEM 544

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS-------- 249
            ++ F P +VTYN++I  F K    ++ +    K+ +    PN ITY +L+         
Sbjct: 545 IQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFK 604

Query: 250 -------AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
                   +   GL+ + D +L  +      L+   +N II  + + G++EK   L+  M
Sbjct: 605 SALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEM 664

Query: 303 KERHCVPDNITFATMIQA 320
                 P ++T   + ++
Sbjct: 665 LHSGFAPHSVTIMALAKS 682



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 155/328 (47%), Gaps = 2/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E     F  M  +G  P+V  Y  ++ AY +   + EAF  +  M ++    P++ +Y++
Sbjct: 220 EMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLM-ALKGLNPNLISYNV 278

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    +  +     +IL EMS        VT+NT+I+GY     F +     + MV++ 
Sbjct: 279 VINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKN- 337

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P++ T  ++I++   +GN+ +  ++ ++    G+  + +T   L   + + G   + 
Sbjct: 338 GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQA 397

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +M  M +  F PT++TYN +I      G +E      ++M  RG  P+ ++Y +++S 
Sbjct: 398 YQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISG 457

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + +   + K   +  ++    +  D   ++ +I    +   + ++ +LF  M      PD
Sbjct: 458 FCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPD 517

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
            +T+ ++I AY   G  + A  L ++MI
Sbjct: 518 EVTYTSLINAYCIEGDLDKALRLHDEMI 545



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 151/334 (45%), Gaps = 4/334 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K ++  +A  L  +M   GL P++  Y  +++   + G + E    + +M S     PD 
Sbjct: 250 KLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM-SKRRYVPDR 308

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFS 124
            T++ LI        F     + AEM   G+  + VTY T+I+   KA      ME  F 
Sbjct: 309 VTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAME--FL 366

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +   G HP+  T  ++I  +   G +++  +   E    G    I T N L   +   
Sbjct: 367 DQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCIL 426

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  +    ++  M +R F P VV+Y+ +I  F +   +EK  +   +M  +G+ P+  TY
Sbjct: 427 GRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATY 486

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+    K   + +V  + +++ +  +  D   +  +I+AY   GD++K   L   M +
Sbjct: 487 SSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQ 546

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +   PD +T+  +I  +N    T+ A+ L  K++
Sbjct: 547 KGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 139/286 (48%), Gaps = 8/286 (2%)

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY---LGIECSAVTYNTIIDGYGKA 113
           S   CK     + +++KSC    R +LI K L+ ++     G     ++YN I+D   + 
Sbjct: 124 SYYQCKSSSAVFDLVVKSCA---RVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRT 180

Query: 114 KKFEEM-ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
           K+  ++ E  F  MVESG   P+++T N +I  +  +GN+E    ++ E    G   ++ 
Sbjct: 181 KQSVKIAEGIFKEMVESG-VSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVV 239

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T N +  +Y +     +   ++  M  +   P +++YN+VI    + G +++  E  ++M
Sbjct: 240 TYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEM 299

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
             R   P+ +T+ +L++ Y   G   +   +  ++  + +  +   +  +I++  +AG++
Sbjct: 300 SKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNL 359

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            +  E    M++R   P+  T+ T+I  ++  G  + A  +  +M+
Sbjct: 360 NRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMV 405



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 146/331 (44%), Gaps = 4/331 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G C+  Q ++ S + E M      P    +  L++ Y   G   +A     +M   
Sbjct: 278 VVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVK- 336

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +   P+V TY+ LI S  K    +   + L +M   G+  +  TY T+IDG+ +    ++
Sbjct: 337 NGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQ 396

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  MVE+G   P I T N++I+ +   G +E       E    G   D+ + + + 
Sbjct: 397 AYQIMKEMVENGFT-PTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTII 455

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             + R    +K   +   M  +   P V TY+ +I+   K   + ++ + F++M   G+ 
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLP 515

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ +TY SL++AY   G + K   +  ++       D   +N +I+ + +    ++   L
Sbjct: 516 PDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRL 575

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEA 329
            L +     VP+ IT+ T+I   N L    A
Sbjct: 576 LLKLLYEESVPNEITYNTLIDNCNNLEFKSA 606



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 139/316 (43%), Gaps = 21/316 (6%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCKPDVYTY 68
           E AS L + M+  G  P V  Y+ ++S + ++  L++AF    +M  K +S   PDV TY
Sbjct: 430 EDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS---PDVATY 486

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S LI+   K  R   +  +  EM  LG+    VTY ++I+ Y      ++       M++
Sbjct: 487 SSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQ 546

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWY----------NEFNLMGVKADIQTLNI-- 176
            G   PDI T N +I+ +      ++ ++            NE     +  +   L    
Sbjct: 547 KG-FSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKS 605

Query: 177 ---LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
              L K +   G+ ++   V++ M ++ +      YN++I    K G+IEK    +K+M 
Sbjct: 606 ALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEML 665

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           H G  P+S+T  +L  +    G  ++++ +L     S  I +      +I    + G+++
Sbjct: 666 HSGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMD 725

Query: 294 KMGELFLTMKERHCVP 309
            +  +   M     +P
Sbjct: 726 AVFNVLKDMALSGLLP 741



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 25/257 (9%)

Query: 5   GKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 60
           G CKQ     +  LF+ MLS GL P    YT+L++AY   G LD+A    ++M  K  S 
Sbjct: 492 GLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFS- 550

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID------------ 108
             PD+ TY++LI    K  R    +++L ++ Y     + +TYNT+ID            
Sbjct: 551 --PDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALA 608

Query: 109 ---GYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
              G+       E +    +M++ G   + +++  N +I  +   GNIEK    Y E   
Sbjct: 609 LMKGFCMKGLMNEADRVLESMLQKGYKLNEEVY--NVIIHGHSKVGNIEKAYNLYKEMLH 666

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G      T+  L KS    G   ++  ++D+  K           ++I    K G+++ 
Sbjct: 667 SGFAPHSVTIMALAKSLYHEGKEVELNQLLDYTLKSCRITEAALAKVLIGINSKEGNMDA 726

Query: 225 MEEYFKKMKHRGMKPNS 241
           +    K M   G+ P S
Sbjct: 727 VFNVLKDMALSGLLPYS 743


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 156/363 (42%), Gaps = 37/363 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  LFE M + GL+P +  Y +L+  YG+ G+L  A S   +MK  + C+PDV TY+ 
Sbjct: 268 EAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKD-AGCEPDVITYNS 326

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    KF R     + L  M   G++ + VTY+T+ID + KA    E    F  M+  G
Sbjct: 327 LINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVG 386

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT------------ 178
              P+ FT  S+I A    G++ +  K  +E    GV  +I T   L             
Sbjct: 387 -LQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREA 445

Query: 179 -----------------------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
                                    Y +A M +K   +++ M K+   P ++ Y   I  
Sbjct: 446 EELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWG 505

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             +   IE      ++M   G+  NS  Y +L+ AY K G   +  ++L+++++  + + 
Sbjct: 506 LCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKIT 565

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              +  +I    + G V++    F  M      P+ + +  +I         E A+NL N
Sbjct: 566 VVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFN 625

Query: 336 KMI 338
           +M+
Sbjct: 626 EML 628



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 140/315 (44%), Gaps = 8/315 (2%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82
           +P   V+  L +     G+L+EA   F  +N  + +    P V + + L+   +K  +  
Sbjct: 178 RPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVL----PKVRSCNELLHRLSKSSKGG 233

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
           L      +M   G+  S  TYN +I    +    E   S F  M ++ G  PDI T NS+
Sbjct: 234 LALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEM-KAKGLRPDIVTYNSL 292

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           I  YG  G +      + E    G + D+ T N L   + +     +    +  M++R  
Sbjct: 293 IDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGL 352

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P VVTY+ +I+ F KAG + +  ++F  M   G++PN  TY SL+ A  K G + +   
Sbjct: 353 QPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFK 412

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           +  +++ + V L+   +  ++    + G + +  ELF  + +     +   + ++   Y 
Sbjct: 413 LESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYI 472

Query: 323 ALGMTEAAQNLENKM 337
              M E A ++  +M
Sbjct: 473 KAKMMEKAMDILEEM 487



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 120/273 (43%), Gaps = 1/273 (0%)

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C+P    +  L          +   +   +M+   +     + N ++    K+ K     
Sbjct: 177 CRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLAL 236

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S F  MV +G   P +FT N +I      G++E     + E    G++ DI T N L   
Sbjct: 237 SFFKDMVVAG-LSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDG 295

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           YG+ GM     SV + M+     P V+TYN +I  F K   I +  EY   MK RG++PN
Sbjct: 296 YGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPN 355

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY +L+ A+ KAG++++ +     +    +  +   +  +I A  + GD+ +  +L  
Sbjct: 356 VVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLES 415

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            M++     + +T+  ++      G    A+ L
Sbjct: 416 EMQQAGVNLNIVTYTALLDGLCEDGRMREAEEL 448



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 148/353 (41%), Gaps = 35/353 (9%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   GL+P+V  Y+ L+ A+ ++G+L EA     DM  V   +P+ +TY+ LI +  K  
Sbjct: 347 MKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVG-LQPNEFTYTSLIDANCKIG 405

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--------- 130
             +   K+ +EM   G+  + VTY  ++DG  +  +  E E  F A++++G         
Sbjct: 406 DLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYT 465

Query: 131 -------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
                                       PD+    + I        IE       E    
Sbjct: 466 SLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDC 525

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G+ A+      L  +Y + G   +  +++  MQ      TVVTY ++I+   K G +++ 
Sbjct: 526 GLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQA 585

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
             YF  M   G++PN + Y +L+    K   + +  ++  ++ +  +  D   +  +I  
Sbjct: 586 VRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDG 645

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             + G+  +   L   M E     D   + ++I  ++  G  + A++L ++M+
Sbjct: 646 NMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEML 698



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 146/360 (40%), Gaps = 35/360 (9%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A+  F  M+  GL+P+   YT+L+ A  + G L+EAF   ++M+  +    ++ TY+ L
Sbjct: 374 EANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQ-AGVNLNIVTYTAL 432

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-------------- 117
           +    +  R    E++   +   G   +   Y ++  GY KAK  E              
Sbjct: 433 LDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNL 492

Query: 118 ------------------EMESSFSAMVESGGC--HPDIFTLNSMISAYGNSGNIEKMEK 157
                             E+E S + + E   C    + +   ++I AY   G   +   
Sbjct: 493 KPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVN 552

Query: 158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
              E   +G+K  + T  +L     + G+  +     D M +    P ++ Y  +I+   
Sbjct: 553 LLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLC 612

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           K   +E+ +  F +M  +G+ P+ + Y SL+    K G   +  S+  ++    + LD  
Sbjct: 613 KNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLC 672

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +  +I  + + G V+    L   M  +  +PD +    +++ Y  LG    A  L + M
Sbjct: 673 AYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDM 732



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 98/207 (47%)

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P     +++ +   + G +E+  + + + N   V   +++ N L     ++       
Sbjct: 177 CRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLAL 236

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           S    M      P+V TYN+VI    + G +E     F++MK +G++P+ +TY SL+  Y
Sbjct: 237 SFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGY 296

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K G++    S+  +++++    D   +N +I+ + +   + +  E    MK+R   P+ 
Sbjct: 297 GKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNV 356

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           +T++T+I A+   GM   A      MI
Sbjct: 357 VTYSTLIDAFCKAGMLLEANKFFVDMI 383



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 143/330 (43%), Gaps = 7/330 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+ ++ E+   LF  +L  G   +  +YT+L   Y ++ ++++A   + +M    + KPD
Sbjct: 440 GRMREAEE---LFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNK-KNLKPD 495

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           +  Y   I    + +  +    ++ EM   G+  ++  Y T+ID Y K  K  E  +   
Sbjct: 496 LLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQ 555

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +  G    + T   +I      G +++  ++++     G++ +I     L     + 
Sbjct: 556 EM-QDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKN 614

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              ++ +++ + M  +   P  + Y  +I+   K G+  +      +M   GM+ +   Y
Sbjct: 615 DCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAY 674

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL+  +S+ G +    S+L ++    +I D     C++  Y + GD+ +   L   M  
Sbjct: 675 TSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMAR 734

Query: 305 RHCVPD--NITFATMIQAYNALGMTEAAQN 332
           R  +    +IT  + + A   L    A+Q+
Sbjct: 735 RGLISGTIDITVPSCLTAVTKLHKLCASQS 764


>gi|449525162|ref|XP_004169587.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g73710-like [Cucumis sativus]
          Length = 1026

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 150/321 (46%), Gaps = 7/321 (2%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           ++  Y   GLLD A   +   +  ++  P + + +I+     K   F+     L +    
Sbjct: 467 VIKMYINEGLLDRAKILLEKYRLDTELSPRI-SAAIIDAYAEKGLWFEAESIFLWKRDLA 525

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G +   + YN +I  YGKA+ +E+    F +M ++ G  PD  T NS+I  +     +++
Sbjct: 526 GKKXDVMEYNVMIKAYGKAELYEKAFLLFKSM-KNRGTWPDECTYNSLIQMFSGGDLVDE 584

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             +   E   MG K   QT + +  SY R G+      V D M      P  + Y +++ 
Sbjct: 585 ARRLLTEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVN 644

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            F + G  E+  +YF+ M+  G+  N I   SL+ A+SK G +     I  +++N +   
Sbjct: 645 GFAEIGQAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGA 704

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM----TEAA 330
           DT   N +I+ Y   G V +  ++F  ++ER    D ++FATMI  Y  +GM     E A
Sbjct: 705 DTIASNSMINLYADLGMVSEAKQVFEDLRERG-YADGVSFATMIYLYKNIGMLDEAIEVA 763

Query: 331 QNLENKMIAMKENSGKKLIQC 351
           + ++   +     S +K+I+C
Sbjct: 764 EEMKESGLLRDATSFRKVIEC 784



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 152/336 (45%), Gaps = 8/336 (2%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L   M   GL P    Y   +S Y   G +D A      ++ V    PDV T+  L
Sbjct: 374 EAETLLLKMEERGLSPDTKTYNIFLSLYANDGNIDGALKCYRRIREVG-LFPDVVTHRAL 432

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +   ++ +  + +E ++AEM    I     +   +I  Y      +  +           
Sbjct: 433 LHVLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTE 492

Query: 132 CHPDIFTLNSMISAYGNSG---NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             P I    ++I AY   G     E +  W  + +L G K D+   N++ K+YG+A +Y+
Sbjct: 493 LSPRISA--AIIDAYAEKGLWFEAESIFLW--KRDLAGKKXDVMEYNVMIKAYGKAELYE 548

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K   +   M+ R  +P   TYN +I+ F     +++      +M+  G KP   T+ +++
Sbjct: 549 KAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVI 608

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           ++Y++ GL+     +   + ++DV  +   +  +++ + + G  E+  + F  M++    
Sbjct: 609 ASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFRLMEKSGIA 668

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
            + I   ++I+A++ +G  E A+ + N+M  M++ +
Sbjct: 669 ENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGA 704



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 166/400 (41%), Gaps = 69/400 (17%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK +  E+A LLF+ M + G  P    Y +L+  +    L+DEA   + +M+ +   KP 
Sbjct: 542 GKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLTEMQRMG-FKPT 600

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             T+S +I S  +        ++   M +  +E + + Y  +++G+ +  + EE    F 
Sbjct: 601 CQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFR 660

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +SG     I  L S+I A+   G++E   + YN    M   AD    N +   Y   
Sbjct: 661 LMEKSGIAENQI-VLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASNSMINLYADL 719

Query: 185 GMYDKMRSVMDFMQKRFF-----FPTVV-----------------------------TYN 210
           GM  + + V + +++R +     F T++                             ++ 
Sbjct: 720 GMVSEAKQVFEDLRERGYADGVSFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATSFR 779

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS--------------------- 249
            VIE +   G + +  E   +M  R + P++ T+  L +                     
Sbjct: 780 KVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIPLEAVSQLESAFHE 839

Query: 250 --AYSKAGLIMKVDSIL----RQVENSDVIL------DTPFFNCIISAYGQAGDVEKMGE 297
              Y++  +I  V S L      +E+ D  L      D+  +N  I AYG A  ++K   
Sbjct: 840 EKTYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYAYGAAEKIDKALN 899

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +F+ MK+++  PD +T+  ++  Y   GM E  + + +++
Sbjct: 900 IFMKMKDQNLKPDLVTYINLVGCYGKAGMIEGVKQIYSQL 939



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/363 (20%), Positives = 163/363 (44%), Gaps = 24/363 (6%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ ++ ++  L +  M  +G+ P+ + Y  L+  YG+ GL+ EA   I  M +V    P
Sbjct: 171 LGQAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVYGKVGLVKEALLWIKHM-TVRGIFP 229

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES-- 121
           D  T + +++       FD  +K   +     +E +    N+ ++ +G     E +    
Sbjct: 230 DEVTMNTVVRVLKDAGEFDSADKFYKDWCRGLVELNDFDLNSRVEDFGVNSAVEPITPKH 289

Query: 122 -------SFSAMVESGGCHPDI----------FTLNSMISAYGNSGNIEKMEKWYNEFNL 164
                       + +    P++           T N++I  YG +G ++     + E   
Sbjct: 290 FCXTELFRIGTRIPNRKVSPEVDNCVRKPRLTSTYNTLIDLYGKAGRLKDAANVFGEMLT 349

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G+  D  T N +  + G  G   +  +++  M++R   P   TYNI +  +   G+I+ 
Sbjct: 350 TGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYANDGNIDG 409

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
             + +++++  G+ P+ +T+ +L+   S+  ++  V++++ ++E S ++LD      +I 
Sbjct: 410 ALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIK 469

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
            Y   G +++   L    +    +   I+ A +I AY   G+   A+++    +  ++ +
Sbjct: 470 MYINEGLLDRAKILLEKYRLDTELSPRIS-AAIIDAYAEKGLWFEAESI---FLWKRDLA 525

Query: 345 GKK 347
           GKK
Sbjct: 526 GKK 528



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 146/319 (45%), Gaps = 25/319 (7%)

Query: 56  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
           KS  D  P+V  Y+I++++  +  ++D +     EM+  G+  +  TY  +ID YGK   
Sbjct: 152 KSQKDYVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVYGKVGL 211

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY----------NEFNL- 164
            +E       M    G  PD  T+N+++    ++G  +  +K+Y          N+F+L 
Sbjct: 212 VKEALLWIKHMTVR-GIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWCRGLVELNDFDLN 270

Query: 165 -----MGVKADIQTL---NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV-TYNIVIET 215
                 GV + ++ +   +       R G     R V   +      P +  TYN +I+ 
Sbjct: 271 SRVEDFGVNSAVEPITPKHFCXTELFRIGTRIPNRKVSPEVDNCVRKPRLTSTYNTLIDL 330

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           +GKAG ++     F +M   G+  ++IT+ +++      G + + +++L ++E   +  D
Sbjct: 331 YGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERGLSPD 390

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN--- 332
           T  +N  +S Y   G+++   + +  ++E    PD +T   ++   +   M E  +N   
Sbjct: 391 TKTYNIFLSLYANDGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIA 450

Query: 333 -LENKMIAMKENSGKKLIQ 350
            +E   I + E+S  ++I+
Sbjct: 451 EMEKSHILLDEHSLPRVIK 469



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 126/314 (40%), Gaps = 36/314 (11%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E+A   F +M   G+  +  V T+L+ A+ + G L++A    N MK++ D   D    
Sbjct: 651 QAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMED-GADTIAS 709

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I            +++  ++   G     V++ T+I  Y      +E       M E
Sbjct: 710 NSMINLYADLGMVSEAKQVFEDLRERGY-ADGVSFATMIYLYKNIGMLDEAIEVAEEMKE 768

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL----------- 177
           SG    D  +   +I  Y  +G + +  +  +E     +  D +T N+L           
Sbjct: 769 SGLLR-DATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIPL 827

Query: 178 ------------TKSYGRA----------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
                        K+Y R           G++       D   K         YN+ I  
Sbjct: 828 EAVSQLESAFHEEKTYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYA 887

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           +G A  I+K    F KMK + +KP+ +TY +LV  Y KAG+I  V  I  Q++  ++ L+
Sbjct: 888 YGAAEKIDKALNIFMKMKDQNLKPDLVTYINLVGCYGKAGMIEGVKQIYSQLKYGEIELN 947

Query: 276 TPFFNCIISAYGQA 289
              F  II+ +  A
Sbjct: 948 KSLFFAIINTFRSA 961



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 50/104 (48%)

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
           F  ++ + P V+ YNIV+ T G+A   +++   + +M   G+ P + TY  L+  Y K G
Sbjct: 151 FKSQKDYVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVYGKVG 210

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           L+ +    ++ +    +  D    N ++     AG+ +   + +
Sbjct: 211 LVKEALLWIKHMTVRGIFPDEVTMNTVVRVLKDAGEFDSADKFY 254


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 150/329 (45%), Gaps = 6/329 (1%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           P  A +LF  +    L  S   +  ++     +G    A   +  M S     P+  TY+
Sbjct: 97  PAPAFVLFADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMPS-----PNAVTYN 151

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
            +I       R     +I+ EM   G I     TY T+I G+ K  K E+    F  M+ 
Sbjct: 152 TVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLT 211

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G   P+    N++I  Y + GN+E   ++  E    GV   + T N+   +    G   
Sbjct: 212 EGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAA 271

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +  ++++ M ++   P   TYNI+I  + K G  +K  + F+ M  +G++   +TY SL+
Sbjct: 272 EAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLI 331

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
            A S  G++ + D +        +  D   +N +I+++   GD+++  E+   M+++   
Sbjct: 332 HALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRIT 391

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKM 337
           PD++T+ T+++    LG  + A+ L  +M
Sbjct: 392 PDDVTYNTLMRGLCLLGRLDEARGLIEEM 420



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 145/366 (39%), Gaps = 39/366 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P +A  L   M S    P+   Y  +++ +   G +      + +M+      PD YTY
Sbjct: 131 KPVRALELLRQMPS----PNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTY 186

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           + +I    K  + +   K+  EM   G +E +AV YN +I GY      E        MV
Sbjct: 187 ATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMV 246

Query: 128 ESG----------------------------------GCHPDIFTLNSMISAYGNSGNIE 153
           + G                                  G  PD FT N +I+ Y   G  +
Sbjct: 247 DRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEK 306

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
           K  K +      G++A + T   L  +    GM  +   + +   +R   P +  YN +I
Sbjct: 307 KAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALI 366

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
            +    G +++  E   +M+ + + P+ +TY +L+      G + +   ++ ++    + 
Sbjct: 367 NSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQ 426

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   +N +IS Y   GD++   ++   M  +   P  +T+  MI+     G    A++L
Sbjct: 427 PDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDL 486

Query: 334 ENKMIA 339
             +M+ 
Sbjct: 487 VKEMVG 492



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 107/250 (42%), Gaps = 39/250 (15%)

Query: 5   GKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+ ++  A  +FEVM+  G++ +V  YT+L+ A    G++ E     ND       +
Sbjct: 298 GYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVR-RGIR 356

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD++ Y+ LI S       D   +I+ EM    I    VTYNT++ G     + +E    
Sbjct: 357 PDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGL 416

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M + G   PD+ + N++IS Y   G+I+   K                         
Sbjct: 417 IEEMTKRG-IQPDLVSYNTLISGYSMKGDIKDAVK------------------------- 450

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                     V D M  + F PT++TYN +I+     G     E+  K+M   G+ P+  
Sbjct: 451 ----------VRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPDDS 500

Query: 243 TYCSLVSAYS 252
           TY SL+   +
Sbjct: 501 TYISLIEGLT 510



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 139/321 (43%), Gaps = 42/321 (13%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDM--K 56
           V+ G CK  + E A+ +F+ ML++G ++P+  +Y AL+  Y   G L+ A     +M  +
Sbjct: 189 VISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDR 248

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            VS     V TY++ + +     R      ++ EM   G+   A TYN +I+GY K  K 
Sbjct: 249 GVSMT---VATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKE 305

Query: 117 EEMESSFSAMVESG----------------------------------GCHPDIFTLNSM 142
           ++    F  MV  G                                  G  PD+F  N++
Sbjct: 306 KKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNAL 365

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           I+++   G++++  +   E     +  D  T N L +     G  D+ R +++ M KR  
Sbjct: 366 INSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGI 425

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P +V+YN +I  +   G I+   +   +M  +G  P  +TY +++      G     + 
Sbjct: 426 QPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQGGDAED 485

Query: 263 ILRQVENSDVILDTPFFNCII 283
           +++++  + +  D   +  +I
Sbjct: 486 LVKEMVGNGITPDDSTYISLI 506


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 151/309 (48%), Gaps = 2/309 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  M   G+   V  Y+ L+  +   G L EA   +N+M  +    P+VYTY+IL
Sbjct: 217 EAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEM-VLKTINPNVYTYNIL 275

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           + +  K  +    + +LA M    ++   +TY+T++DGY    + ++ +  F+AM    G
Sbjct: 276 VDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAM-SLMG 334

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+ T   +I+ +  +  +++    + E +   +   I T + L     ++G    + 
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVW 394

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++D M  R     V+TY+ +I+   K GH+++    F KMK +G++PN+ T+  L+   
Sbjct: 395 DLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGL 454

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K G +     + + +      L+   +N +I  + + G +E+   +   M++  C+PD 
Sbjct: 455 CKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDA 514

Query: 312 ITFATMIQA 320
           +TF  +I A
Sbjct: 515 VTFEIIIIA 523



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 162/336 (48%), Gaps = 6/336 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  + +  +   DG   KP+V +Y+ ++ A  +  L+ EA+   ++M +V    
Sbjct: 173 GVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEM-TVKGIS 231

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            DV TYS LI       +      +L EM    I  +  TYN ++D   K  K +E +S 
Sbjct: 232 ADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSV 291

Query: 123 FSAMVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            + M+++  C  PD+ T ++++  Y     ++K +  +N  +LMGV  D+ T  IL   +
Sbjct: 292 LAVMLKA--CVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGF 349

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            +  M D+  ++   M ++   P +VTY+ +I+   K+G I  + +   +M  RG   N 
Sbjct: 350 CKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANV 409

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           ITY SL+    K G + +  ++  ++++  +  +T  F  ++    + G ++   E+F  
Sbjct: 410 ITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQD 469

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +  +    +  T+  MI  +   G+ E A  + +KM
Sbjct: 470 LLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKM 505



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 116/250 (46%), Gaps = 6/250 (2%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+ +  +A  +  VML   +KP V  Y+ L+  Y     + +A    N M S+    PD
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAM-SLMGVTPD 338

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V+TY+ILI    K    D    +  EM    +    VTY+++IDG  K+ +   +     
Sbjct: 339 VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLID 398

Query: 125 AMVESGGCHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            M + G   P ++ T +S+I     +G++++    +N+    G++ +  T  IL     +
Sbjct: 399 EMHDRG--QPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCK 456

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G     + V   +  + +   V TYN++I+   K G +E+      KM+  G  P+++T
Sbjct: 457 GGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVT 516

Query: 244 YCSLVSAYSK 253
           +  ++ A  K
Sbjct: 517 FEIIIIALFK 526



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%)

Query: 160  NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
            +   L G++ D+ TLNIL   +   G      S++  + KR + P  +T+  +I      
Sbjct: 950  HRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLK 1009

Query: 220  GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
            G + K   +  K+  +G + N ++Y +L++   K G       +LR+++      D   +
Sbjct: 1010 GQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMY 1069

Query: 280  NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            N II A  +   V K   LF  M  +    D +T+ T+I  +  +G  + A  L NKM+
Sbjct: 1070 NTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMV 1128



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 132/299 (44%), Gaps = 8/299 (2%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           +D+A S  N M  +    P +  ++ ++ S  K   +     +   +   GI+   +T N
Sbjct: 40  VDDAVSQFNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I+ +    +     S  + +++ G   PD  TLN++I      G ++K   ++++   
Sbjct: 99  ILINCFCHMGQITFGFSVLAKILKRG-YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLA 157

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNIVIETFGKAGH 221
            G + +  +   L     + G     R+ +  +QK   R   P VV Y+ +I+   K   
Sbjct: 158 QGFQLNQVSYGTLINGVCKIG---DTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQL 214

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           + +    F +M  +G+  + +TY +L+  +   G + +   +L ++    +  +   +N 
Sbjct: 215 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           ++ A  + G V++   +   M +    PD IT++T++  Y  +   + AQ++ N M  M
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 333



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 38/243 (15%)

Query: 62   KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKK--- 115
            +PD++T +ILI       +      ILA++   G     +T+ T+I+G    G+  K   
Sbjct: 958  QPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALH 1017

Query: 116  ---------FEEMESSFSAMVESGGC--------------------HPDIFTLNSMISAY 146
                     F+  + S+  ++ +G C                     PD+   N++I A 
Sbjct: 1018 FHDKLLAQGFQLNQVSYGTLI-NGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDAL 1076

Query: 147  GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
                 + K    + E N+ G+ AD+ T N L   +   G   +   +++ M  +   P V
Sbjct: 1077 CKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNV 1136

Query: 207  VTYNIVIETFGKAGH--IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
             TYNI+++   K G   +++      KM+  G K N++T+  ++SA  +     KV+ +L
Sbjct: 1137 RTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLL 1196

Query: 265  RQV 267
             ++
Sbjct: 1197 HEM 1199



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 107/250 (42%), Gaps = 9/250 (3%)

Query: 95   GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
            GI+    T N +I+ +    +      S  A +   G HPD  T  ++I+     G + K
Sbjct: 956  GIQPDLFTLNILINCFCHMGQIT-FNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNK 1014

Query: 155  MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNI 211
               ++++    G + +  +   L     + G     R+ +  ++K   R   P VV YN 
Sbjct: 1015 ALHFHDKLLAQGFQLNQVSYGTLINGVCKIG---DTRAAIKLLRKIDGRLTKPDVVMYNT 1071

Query: 212  VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
            +I+   K   + K    F +M  +G+  + +TY +L+  +   G + +   +L ++    
Sbjct: 1072 IIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKT 1131

Query: 272  VILDTPFFNCIISAYGQAGD--VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
            +  +   +N ++ A  + G   +++   +   M++  C  + +TF  +I A       + 
Sbjct: 1132 INPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDK 1191

Query: 330  AQNLENKMIA 339
             + L ++MIA
Sbjct: 1192 VEKLLHEMIA 1201



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 4/220 (1%)

Query: 20   MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
            +L  G  P    +T L++     G +++A    +D       + +  +Y  LI    K  
Sbjct: 987  ILKRGYHPDTITFTTLINGLCLKGQVNKALH-FHDKLLAQGFQLNQVSYGTLINGVCKIG 1045

Query: 80   RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
                  K+L ++     +   V YNTIID   K +   +    F  M    G   D+ T 
Sbjct: 1046 DTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEM-NVKGISADVVTY 1104

Query: 140  NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG--MYDKMRSVMDFM 197
            N++I  +   G +++     N+  L  +  +++T NIL  +  + G  + D+  S++  M
Sbjct: 1105 NTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKM 1164

Query: 198  QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            +        VT+ I+I    +    +K+E+   +M  RG+
Sbjct: 1165 EDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score = 42.4 bits (98), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 3    MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG--LLDEAFSTINDMKSVSD 60
            ++GK K+   A  L   M+   + P+V  Y  LV A  + G  LLDE+ S ++ M+  + 
Sbjct: 1113 IVGKLKE---AIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMED-NG 1168

Query: 61   CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 96
            CK +  T+ I+I +  +    D +EK+L EM   G+
Sbjct: 1169 CKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 2/314 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           +P+   Y  +++ +   G +  A   + +M+      P+ YTY  +I    K  R D   
Sbjct: 182 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 241

Query: 86  KILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           K+  EM   G ++  AV YN +I GY    K +        MVE G     + T N ++ 
Sbjct: 242 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM-TVATYNLLVH 300

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
           A    G   +  +   E    G+  D+ T NIL   + + G   K   + + M +R    
Sbjct: 301 ALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRA 360

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           TVVTY  +I    K G +++ ++ F +   RG++P+ + Y +L++++S +G I +   I+
Sbjct: 361 TVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIM 420

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++E   +  D   +N ++      G V++  +L   M +R   PD +T+ T+I  Y+  
Sbjct: 421 GEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMK 480

Query: 325 GMTEAAQNLENKMI 338
           G  + A  + N+M+
Sbjct: 481 GDVKDALRIRNEMM 494



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 159/344 (46%), Gaps = 15/344 (4%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V+ G CK  + ++A  +F+ ML+ G +KP   +Y AL+  Y   G LD A     D    
Sbjct: 227 VISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL-LYRDRMVE 285

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
                 V TY++L+ +     R     +++ EM   G+     TYN +I+G+ K    ++
Sbjct: 286 RGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKK 345

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  M   G     + T  S+I A    G +++ +K ++E    G++ D+   N L 
Sbjct: 346 ALEIFENMSRRG-VRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALI 404

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            S+  +G  D+   +M  M+K+   P  VTYN ++      G +++  +   +M  RG++
Sbjct: 405 NSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQ 464

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY---GQAGDVEKM 295
           P+ +TY +L+S YS  G +     I  ++ N         +N +I      GQ  D E M
Sbjct: 465 PDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENM 524

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +    M E    PD+ T+ ++I+       TE  + ++++ +A
Sbjct: 525 VK---EMVENGITPDDSTYISLIEGLT----TEDERAIDDERLA 561


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 169/364 (46%), Gaps = 40/364 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +  +A  L + M+  G +P +  Y  +V+   + G +D A + +N M++ +  K +V  +
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEA-ARIKANVVIF 261

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I S  K+   ++   +  EM   GI  + VTYN++I+      ++ +     S M+E
Sbjct: 262 NTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLE 321

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
               +P++ T N++I A+   G + + EK + E     +  D  T N+L   +      D
Sbjct: 322 KK-INPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           + + +  FM  +   P + TYN +I  F K   +E   E F++M  RG+  N++TY +++
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440

Query: 249 SAYSKAG-------------------LIM-------------KVDS---ILRQVENSDVI 273
             + +AG                    IM             K+D+   I + ++ S++ 
Sbjct: 441 QGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEME 500

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           L+   +N +I    +AG V +  +LF ++  +   PD +T+ TMI    +  + + A +L
Sbjct: 501 LNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDL 557

Query: 334 ENKM 337
             KM
Sbjct: 558 FRKM 561



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 153/339 (45%), Gaps = 39/339 (11%)

Query: 5   GKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C  K+   A  L + M+  G KP    +T L+          EA + ++ M     C+
Sbjct: 162 GYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ-RGCQ 220

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+ TY  ++    K    DL   +L +M    I+ + V +NTIID   K +  E     
Sbjct: 221 PDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDL 280

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ M E+ G  P++ T NS+I+   N G      +W +   L+         N+L K   
Sbjct: 281 FTEM-ETKGIRPNVVTYNSLINCLCNYG------RWSDASRLLS--------NMLEKKIN 325

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                                P VVT+N +I+ F K G + + E+  ++M  R + P++I
Sbjct: 326 ---------------------PNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTI 364

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L++ +     + +   + + + + D + +   +N +I+ + +   VE   ELF  M
Sbjct: 365 TYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREM 424

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            +R  V + +T+ T+IQ +   G  ++AQ +  +M++ +
Sbjct: 425 SQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNR 463



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 142/311 (45%), Gaps = 2/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF  M+     PS+  +  L+SA  +    +   S    M+++     D+YTYSI
Sbjct: 65  DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLG-ISHDLYTYSI 123

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            I    +  +  L   +LA+M  LG E   VT +++++GY  +K+  +  +    MVE G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD FT  ++I          +     ++    G + D+ T   +     + G  D  
Sbjct: 184 Y-KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            ++++ M+       VV +N +I++  K  H+E   + F +M+ +G++PN +TY SL++ 
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G       +L  +    +  +   FN +I A+ + G + +  +L   M +R   PD
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPD 362

Query: 311 NITFATMIQAY 321
            IT+  +I  +
Sbjct: 363 TITYNLLINGF 373



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 136/303 (44%), Gaps = 5/303 (1%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           AS L   ML   + P+V  + AL+ A+ + G L EA     +M   S   PD  TY++LI
Sbjct: 312 ASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS-IDPDTITYNLLI 370

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                 +R D  +++   M       +  TYNT+I+G+ K K+ E+    F  M + G  
Sbjct: 371 NGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLV 430

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
              + T  ++I  +  +G+ +  +  + +     V  DI T +IL       G  D    
Sbjct: 431 GNTV-TYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALV 489

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +  ++QK      +  YN +IE   KAG + +  + F  +    +KP+ +TY +++S   
Sbjct: 490 IFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMISGLC 546

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
              L+ + D + R+++    + ++  +N +I A  +  D     EL   M+    V D  
Sbjct: 547 SKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDAS 606

Query: 313 TFA 315
           T +
Sbjct: 607 TIS 609



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 5/239 (2%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L E M+   + P    Y  L++ +     LDEA      M S  DC P++ TY+ L
Sbjct: 346 EAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVS-KDCLPNIQTYNTL 404

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K  R +   ++  EMS  G+  + VTY TII G+ +A   +  +  F  MV S  
Sbjct: 405 INGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMV-SNR 463

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              DI T + ++    + G ++     +       ++ +I   N + +   +AG   K+ 
Sbjct: 464 VPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAG---KVG 520

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              D        P VVTYN +I        +++ ++ F+KMK  G  PNS TY +L+ A
Sbjct: 521 EAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRA 579



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 1/245 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S V +N ++    K  KFE +  S    +++ G   D++T +  I+ +     +      
Sbjct: 82  SIVEFNKLLSAVAKMNKFE-LVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             +   +G + DI TL+ L   Y  +       +++D M +  + P   T+  +I     
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
                +      +M  RG +P+ +TY ++V+   K G I    ++L ++E + +  +   
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI 260

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           FN II +  +   VE   +LF  M+ +   P+ +T+ ++I      G    A  L + M+
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320

Query: 339 AMKEN 343
             K N
Sbjct: 321 EKKIN 325


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 153/336 (45%), Gaps = 4/336 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   E +  LF  M   GL P V  Y +L+  YG+ G L+E  S  N+MK V  C PD
Sbjct: 300 CKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVG-CVPD 358

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY+ LI    KF +     +  +EM   G++ + VTY+T+ID + K    +     F 
Sbjct: 359 IITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFV 418

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M  +G   P+ FT  S+I A   +GN+ +  K  N+    GVK +I T   L     +A
Sbjct: 419 DMRRTG-LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKA 477

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +   V   M K    P    Y  ++  + KA  +E   +  K+M    +KP+ I Y
Sbjct: 478 GRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILY 537

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            S++  +     + +   IL ++++  +  +      II AY +AG        F  M++
Sbjct: 538 GSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQD 597

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
                  +T+  +I      G+ E A +   +M+++
Sbjct: 598 VGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSL 633



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 151/318 (47%), Gaps = 20/318 (6%)

Query: 31  VYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           V+  L S + + GLL+EA   FS + + +++    P   + + L+   +K     L+ K 
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRNFRTL----PKARSCNFLLHRLSKSGNGQLVRKF 276

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             +M   GI  S  TYN +ID   K    E     F  M E G   PD+ T NS+I  YG
Sbjct: 277 FNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMG-LSPDVVTYNSLIDGYG 335

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF---MQKRFFFP 204
             G++E++   +NE   +G   DI T N L   Y +   ++KM    ++   M+     P
Sbjct: 336 KVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCK---FEKMPRAFEYFSEMKNNGLKP 392

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            VVTY+ +I+ F K G ++   + F  M+  G+ PN  TY SL+ A  KAG + +   +L
Sbjct: 393 NVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLL 452

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             +  + V L+   +  ++    +AG + +  E+F +M +    P+   +  ++  Y   
Sbjct: 453 NDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGY--- 509

Query: 325 GMTEAAQNLENKMIAMKE 342
                A+ +E+ M  +K+
Sbjct: 510 ---IKAERMEDAMKILKQ 524



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 147/311 (47%), Gaps = 2/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A+  F  M +    P       L+    +SG         NDM   +   P V+TY++
Sbjct: 236 EEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIG-AGIAPSVFTYNV 294

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    K    +   ++  +M  +G+    VTYN++IDGYGK    EE+ S F+ M +  
Sbjct: 295 MIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM-KDV 353

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PDI T N +I+ Y     + +  ++++E    G+K ++ T + L  ++ + GM    
Sbjct: 354 GCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 413

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M++    P   TY  +I+   KAG++ +  +    M   G+K N +TY +L+  
Sbjct: 414 IKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDG 473

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             KAG +++ + + R +    +  +   +  ++  Y +A  +E   ++   M E +  PD
Sbjct: 474 LCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 533

Query: 311 NITFATMIQAY 321
            I + ++I  +
Sbjct: 534 LILYGSIIWGH 544



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 143/323 (44%), Gaps = 2/323 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M   GL P+   YT+L+ A  ++G L EA+  +NDM   +  K ++ TY+ L+   
Sbjct: 416 LFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQ-AGVKLNIVTYTALLDGL 474

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R    E++   M   GI  +   Y  ++ GY KA++ E+       M E     PD
Sbjct: 475 CKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECN-IKPD 533

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +    S+I  + +   +E+ +    E    G+ A+      +  +Y +AG      +   
Sbjct: 534 LILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQ 593

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            MQ      T+VTY ++I+   KAG +E   +YF +M   G++PN   Y SL+    K  
Sbjct: 594 EMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNN 653

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I     +  +++   +  D   F  +I    + G++++   L   M E     D   + 
Sbjct: 654 CIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYT 713

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
           +++  ++  G    A+   N+MI
Sbjct: 714 SLVSGFSQCGELHQARKFFNEMI 736



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 148/330 (44%), Gaps = 4/330 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L   ML  G+K ++  YTAL+    ++G + EA      M       P+   Y+ L
Sbjct: 447 EAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLK-DGISPNQQVYTAL 505

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG- 130
           +    K  R +   KIL +M+   I+   + Y +II G+   +K EE +     M   G 
Sbjct: 506 VHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGI 565

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
             +P I T  ++I AY  +G       ++ E   +GV+A I T  +L     +AG+ +  
Sbjct: 566 SANPVIST--TIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELA 623

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
                 M      P V  Y  +I+   K   IE  ++ F +M+ RGM P+   + +L+  
Sbjct: 624 VDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDG 683

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K G + +   ++ ++    +  D   +  ++S + Q G++ +  + F  M E+  +P+
Sbjct: 684 NLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPE 743

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +    +++ Y   G  + A  L+N+M  M
Sbjct: 744 EVLCICLLREYYKRGQLDEAIELKNEMERM 773



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 135/297 (45%), Gaps = 6/297 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK     +A  +F  ML DG+ P+  VYTALV  Y ++  +++A   +  M    + K
Sbjct: 473 GLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTEC-NIK 531

Query: 63  PDVYTY-SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           PD+  Y SI+   C++  + +  + IL EM   GI  + V   TIID Y KA K  +  +
Sbjct: 532 PDLILYGSIIWGHCSQ-RKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALN 590

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F  M +  G    I T   +I     +G +E    ++     +G++ ++     L    
Sbjct: 591 FFQEM-QDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGL 649

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            +    +  + + D MQ R   P +  +  +I+   K G++++      +M    ++ + 
Sbjct: 650 CKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDL 709

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
             Y SLVS +S+ G + +      ++    ++ +     C++  Y + G +++  EL
Sbjct: 710 HVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIEL 766


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 146/363 (40%), Gaps = 36/363 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  + E +   GL P+V  YT LV  Y + G ++EA   + +MK   D   D   Y +
Sbjct: 270 EDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGM 329

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    +  R D   ++  EM   GI  +   YNT+I+G  K  + EE++     M E  
Sbjct: 330 MINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM-EDV 388

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD ++ N++I  Y   G++ K  +        G+ A   T N L K +      D  
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 191 RSVMDFMQKRFFFP-----------------------------------TVVTYNIVIET 215
             +   M KR   P                                    V+T+N VI  
Sbjct: 449 LRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVING 508

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K G + + EE   +MK     P+S+TY +L   Y K G +     ++ ++E+      
Sbjct: 509 LCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPS 568

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              FN  I+ +  A    K+ ++   M  R   P+ +T+  +I  +   G    A NL  
Sbjct: 569 VEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYF 628

Query: 336 KMI 338
           +M+
Sbjct: 629 EMV 631



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 151/363 (41%), Gaps = 36/363 (9%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           P  A++++  M   G+ P       +  AY + G + +A   + +M+ +   + ++  Y 
Sbjct: 199 PGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMG-LEVNLVAYH 257

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            ++         +   +IL  +   G+  + VTY  ++ GY K  + EE E     M E+
Sbjct: 258 AVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKET 317

Query: 130 G-----------------------------------GCHPDIFTLNSMISAYGNSGNIEK 154
           G                                   G H ++F  N+MI+     G +E+
Sbjct: 318 GDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEE 377

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
           ++K   E   +G++ D  + N L   Y R G   K   +   M +     T +TYN +++
Sbjct: 378 VQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLK 437

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            F     I+     +  M  RG+ PN I+  +L+    KAG   +  ++ ++     +  
Sbjct: 438 GFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAK 497

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           +   FN +I+   + G + +  EL   MKE  C PD++T+ T+   Y  LG    A +L 
Sbjct: 498 NVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLM 557

Query: 335 NKM 337
           NKM
Sbjct: 558 NKM 560



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 149/332 (44%), Gaps = 3/332 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q   A  +F+ M   G +PS+     L++   QSG    A      M+ ++   PD +T 
Sbjct: 163 QLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMR-IAGVLPDEFTV 221

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I+ K+  +  R     + + EM  +G+E + V Y+ ++D Y      E+      ++ +
Sbjct: 222 AIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESL-Q 280

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMY 187
             G  P++ T   ++  Y   G +E+ E+   E    G +  D     ++   Y + G  
Sbjct: 281 RKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRM 340

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D    V + M+       +  YN +I    K G +E++++  ++M+  GM+P+  +Y +L
Sbjct: 341 DDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTL 400

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  Y + G + K   + R +  + +   T  +N ++  +     ++    L+  M +R  
Sbjct: 401 IDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGV 460

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            P+ I+ +T++      G TE A NL  + +A
Sbjct: 461 APNEISCSTLLDGLFKAGKTEQALNLWKETLA 492



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 160/361 (44%), Gaps = 28/361 (7%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + EQA  L++  L+ GL  +V  +  +++   + G + EA   ++ MK +  C P
Sbjct: 474 LFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELR-CPP 532

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY  L     K  +      ++ +M +LG   S   +N+ I G+  AK++ ++    
Sbjct: 533 DSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIH 592

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M  + G  P++ T  ++I+ +   GN+ +    Y E    G+  ++   + L   + +
Sbjct: 593 SEM-SARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYK 651

Query: 184 AGMYD--------------------------KMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
            G  D                          K+  V+D +         V +N++I    
Sbjct: 652 EGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLC 711

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           K+G I   +  F+ ++++   P++ TY SL+   + +G I +  S+   + ++ +  +  
Sbjct: 712 KSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNII 771

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +N +I    ++G + +   LF  ++ +   P+ IT+ T+I  Y   G T  A  L+ KM
Sbjct: 772 TYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKM 831

Query: 338 I 338
           +
Sbjct: 832 V 832



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 154/363 (42%), Gaps = 30/363 (8%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C++    +A  +  +M+ +GL  +   Y  L+  +     +D+A      M       
Sbjct: 403 GYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLK-RGVA 461

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+  + S L+    K  + +    +  E    G+  + +T+NT+I+G  K  +  E E  
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEEL 521

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E   C PD  T  ++   Y   G +       N+   +G    ++  N     + 
Sbjct: 522 LDRMKELR-CPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHF 580

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            A  + K+  +   M  R   P +VTY  +I  + K G++ +    + +M + GM PN  
Sbjct: 581 IAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVF 640

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVI----------------LDT-----P---- 277
              +L+S + K G + + + +L+++ N D+I                +DT     P    
Sbjct: 641 ICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSAN 700

Query: 278 -FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             +N II    ++G +     LF +++ +  +PDN T++++I    A G  + A +L + 
Sbjct: 701 VMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDV 760

Query: 337 MIA 339
           M++
Sbjct: 761 MLS 763



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 153/313 (48%), Gaps = 15/313 (4%)

Query: 2   VMLGKCKQ---PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           ++ G CK+    E  +L FE M+++G+ P+V + +AL+S + + G +DEA   +  + ++
Sbjct: 610 LIAGWCKEGNLHEACNLYFE-MVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNI 668

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            D  P     +I I         D I  ++  ++      + V +N II G  K+ +  +
Sbjct: 669 -DMIPGCSISTIEI---------DKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIAD 718

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            +S F ++  +    PD FT +S+I     SG+I++     +     G+  +I T N L 
Sbjct: 719 AKSLFESL-RNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLI 777

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               ++G   +  ++ + +Q +   P  +TYN +I+ + K G   +  +  +KM   G++
Sbjct: 778 YGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQ 837

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P  ITY  L+      G + +   +L Q+  ++V  +   +  +I  Y ++G++E++ +L
Sbjct: 838 PTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKL 897

Query: 299 FLTMKERHCVPDN 311
           +  M  R  +P N
Sbjct: 898 YDEMHIRGLLPTN 910


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 170/374 (45%), Gaps = 40/374 (10%)

Query: 2   VMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G CKQ +  S L  F+ M  +G+ P+   Y  ++    ++G +D+A+   N MK+  
Sbjct: 335 LMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKN-K 393

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           D  P V+  + LI+   K    +   K+  E    GI  +  TYN+++    K  K  E 
Sbjct: 394 DISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGI-ANVFTYNSLLSWLCKEGKMSEA 452

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            S +  MV  G   P + + N+MI  +   G+++     + E    G+K ++ T ++L  
Sbjct: 453 CSIWEKMVRKG-VRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMD 511

Query: 180 SYGRAG-------MYDKMR----SVMDFM-----------------QKRF-------FFP 204
            Y + G       +YD+MR    +  DF                  Q R        F P
Sbjct: 512 GYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIP 571

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           T +TYN +I+ F K G +      + +M   G+ PN  TY +L++ + K+  +     ++
Sbjct: 572 TCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVM 631

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            +++N  + LD   +  +I  + + GD+    +L   ++E    P+ + +++MI  +  L
Sbjct: 632 DEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKL 691

Query: 325 GMTEAAQNLENKMI 338
              EAA +L  +MI
Sbjct: 692 QNMEAALHLHKRMI 705



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 151/337 (44%), Gaps = 12/337 (3%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+ +  +A  ++E M+  G++PSV  Y  ++  + Q G +D A     +M      KP+
Sbjct: 444 CKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLE-KGLKPN 502

Query: 65  VYTYSILI----KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           + TYS+L+    K     + F L +++  E     I  S  T N II+G  KA +  E +
Sbjct: 503 LITYSVLMDGYFKKGDTEYAFGLYDRMRGE----NIAPSDFTCNIIINGLCKAGRTSESQ 558

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                +V+ G   P   T N +I  +   G++      Y E   +GV  ++ T   L   
Sbjct: 559 DRLKKLVQEGFI-PTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLING 617

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           + ++   D    VMD M+ +     V  Y  +I+ F + G +    +   +++  G+ PN
Sbjct: 618 FCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPN 677

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            + Y S++S + K   +     + +++ N  +  D   +  +IS   + G +    EL+ 
Sbjct: 678 KVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYA 737

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            M  +  +PD IT++ +I      G  E AQ +   M
Sbjct: 738 EMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDM 774



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 154/339 (45%), Gaps = 4/339 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++LG C+Q +   A+ +F  ML  GLKP++  Y+ L+  Y + G  + AF   + M+   
Sbjct: 474 MILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRG-E 532

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +  P  +T +I+I    K  R    +  L ++   G   + +TYN IIDG+ K       
Sbjct: 533 NIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSA 592

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
            + ++ M + G   P++FT  ++I+ +  S N++   K  +E    G++ D+     L  
Sbjct: 593 LAVYTEMCKIG-VSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALID 651

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + R G       ++  +Q+    P  V Y+ +I  F K  ++E      K+M + G+  
Sbjct: 652 GFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPC 711

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +   Y +L+S   K G ++    +  ++    ++ D   ++ +I      G +E   ++ 
Sbjct: 712 DLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKIL 771

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M  +   P    + T+I  +   G  + A  L N+M+
Sbjct: 772 EDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEML 810



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/294 (20%), Positives = 129/294 (43%), Gaps = 4/294 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  +  ++    + ++ +G  P+   Y  ++  + + G ++ A +   +M  +
Sbjct: 543 IIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKI 602

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               P+V+TY+ LI    K +  DL  K++ EM   GIE     Y  +IDG+ +      
Sbjct: 603 G-VSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVN 661

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                S + E G   P+    +SMIS +    N+E     +      G+  D+Q    L 
Sbjct: 662 ASQLLSELQEVG-LSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLI 720

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               + G       +   M  +   P ++TY+++I      G +E  ++  + M  + M 
Sbjct: 721 SGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMT 780

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           P    Y +L++ + K G + +   +  ++ +  ++ D   ++ +++   + G++
Sbjct: 781 PTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNL 834



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 145/367 (39%), Gaps = 38/367 (10%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K+   A   F  ++   + P + V    +S   ++ ++ EA    N M S    K D 
Sbjct: 166 KTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMAS-KGVKGDC 224

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            T S++I++  +  + +  E    E    G+E  A  Y+ +I+   K             
Sbjct: 225 ATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLRE 284

Query: 126 MVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           M + G   H  IFT   +I      G + +  K   E    G   ++     L K Y + 
Sbjct: 285 MRDKGWVPHEVIFT--RVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQ 342

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP----- 239
           G  D    + D M +    P  VTY ++IE   K G+++K  E + +MK++ + P     
Sbjct: 343 GDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNV 402

Query: 240 -----------------------------NSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
                                        N  TY SL+S   K G + +  SI  ++   
Sbjct: 403 NSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRK 462

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            V      +N +I  + Q GD++    +F+ M E+   P+ IT++ ++  Y   G TE A
Sbjct: 463 GVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYA 522

Query: 331 QNLENKM 337
             L ++M
Sbjct: 523 FGLYDRM 529


>gi|297737146|emb|CBI26347.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 160/350 (45%), Gaps = 13/350 (3%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + +LGK ++      L++ M+S G+ P    Y  L+  Y + GL +EA   ++ M     
Sbjct: 203 LRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRMNK-QG 261

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKI-----LAEMSYLGIECSAVTYNTIIDGYGKAKK 115
            +PD  T  +++++  K   F   E+      L   S   +  S+ TYNT+ID YGKA +
Sbjct: 262 MEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLESASQPHVCLSSYTYNTLIDTYGKAGQ 321

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
             E   +F+ M+   G  P+  T N+MI   GN G +E+      +   +    D +T N
Sbjct: 322 LREASDTFAWMLRE-GIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRTYN 380

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
           IL   + +    D+  S    M++    P +V+Y  ++  F     + + E    +M  R
Sbjct: 381 ILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEMDER 440

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G++ +  T  +L   Y +AG++ K     R+  + +  + +  ++  I AYG+ G + + 
Sbjct: 441 GLEIDEFTQSALTRMYIEAGMLKKSWLWFRRF-HLEGNMSSECYSANIDAYGERGHILEA 499

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
            + FL  KE   +   + F  MI+AY      E A  L + M    EN G
Sbjct: 500 EKAFLCCKESRKL-SVLEFNVMIKAYGISNRYEKACQLIDSM----ENHG 544



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 149/299 (49%), Gaps = 17/299 (5%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTY 103
           LDEA S   +  S  +        SI++K  + + R  ++ E +  +  Y   E + + Y
Sbjct: 150 LDEALSPWEESLSNKE-------RSIILKEQSCWERALEIFEWLKKKGCY---ELNVIHY 199

Query: 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
           N ++   GKA+K+  +ES +  M+ S G  P   T  ++I  Y   G  E+   W +  N
Sbjct: 200 NIMLRILGKARKWHHVESLWDEMM-SRGITPVNSTYGTLIDVYSKGGLTEEALHWLDRMN 258

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVM-DFMQKRFFFPTVV----TYNIVIETFGK 218
             G++ D  T+ ++ ++Y +AG + K      ++  +    P V     TYN +I+T+GK
Sbjct: 259 KQGMEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLESASQPHVCLSSYTYNTLIDTYGK 318

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
           AG + +  + F  M   G+ PN++T+ +++      G + +  S+++++E      DT  
Sbjct: 319 AGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCPPDTRT 378

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +N +IS + +  ++++    F  MKE    PD +++ T++ A++   +   A+ L ++M
Sbjct: 379 YNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEILVSEM 437



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 151/363 (41%), Gaps = 37/363 (10%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G   Q E+A+ L + M      P    Y  L+S + +   +D A S    MK  +  +PD
Sbjct: 352 GNHGQLEEAASLMQKMEELRCPPDTRTYNILISLHAKHNNIDRAASYFKKMKE-ARLEPD 410

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-----SAVT----------------- 102
           + +Y  L+ + +  H     E +++EM   G+E      SA+T                 
Sbjct: 411 LVSYRTLLYAFSIRHLVGEAEILVSEMDERGLEIDEFTQSALTRMYIEAGMLKKSWLWFR 470

Query: 103 ------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
                       Y+  ID YG+     E E +F    ES      +   N MI AYG S 
Sbjct: 471 RFHLEGNMSSECYSANIDAYGERGHILEAEKAFLCCKESRKL--SVLEFNVMIKAYGISN 528

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
             EK  +  +     GV  D  + N L +    A +  K +  +  MQ+       + Y 
Sbjct: 529 RYEKACQLIDSMENHGVLPDKFSYNSLIQILASADLPHKAKFYLMKMQETQLVSDCIPYC 588

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            VI +F K G +E  E  FK+M    ++P+ + Y  L++A++  G + +  + +  + N+
Sbjct: 589 AVISSFIKLGQLEMAEGLFKEMIGYNVQPDVVVYGILINAFADVGNVREAVNYVNALRNA 648

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            + ++   +N +I  Y + G +E+  E +  ++     PD  +   MI  Y+   M + A
Sbjct: 649 GLPMNAVIYNSLIKLYTKVGYLEEAQEAYKMLQASEVGPDVYSSNCMIDLYSERSMVKQA 708

Query: 331 QNL 333
           + +
Sbjct: 709 EEI 711



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 119/268 (44%), Gaps = 6/268 (2%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V  Y+I+++   K  ++  +E +  EM   GI     TY T+ID Y K    EE     
Sbjct: 195 NVIHYNIMLRILGKARKWHHVESLWDEMMSRGITPVNSTYGTLIDVYSKGGLTEEALHWL 254

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-----VKADIQTLNILT 178
             M + G   PD  T+  ++  Y  +G  +K E+++  ++L       V     T N L 
Sbjct: 255 DRMNKQG-MEPDEVTMGVVVQTYKKAGEFKKAEQFFKNWSLESASQPHVCLSSYTYNTLI 313

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+AG   +      +M +    P  VT+N +I   G  G +E+     +KM+     
Sbjct: 314 DTYGKAGQLREASDTFAWMLREGIIPNTVTFNTMIHICGNHGQLEEAASLMQKMEELRCP 373

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++ TY  L+S ++K   I +  S  ++++ + +  D   +  ++ A+     V +   L
Sbjct: 374 PDTRTYNILISLHAKHNNIDRAASYFKKMKEARLEPDLVSYRTLLYAFSIRHLVGEAEIL 433

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGM 326
              M ER    D  T + + + Y   GM
Sbjct: 434 VSEMDERGLEIDEFTQSALTRMYIEAGM 461



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 109/254 (42%), Gaps = 3/254 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L     P +A      M    L      Y A++S++ + G L+ A     +M    + +
Sbjct: 558 ILASADLPHKAKFYLMKMQETQLVSDCIPYCAVISSFIKLGQLEMAEGLFKEMIGY-NVQ 616

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV  Y ILI +             +  +   G+  +AV YN++I  Y K    EE + +
Sbjct: 617 PDVVVYGILINAFADVGNVREAVNYVNALRNAGLPMNAVIYNSLIKLYTKVGYLEEAQEA 676

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +  M+++    PD+++ N MI  Y     +++ E+ +      G  A+  +  ++   Y 
Sbjct: 677 YK-MLQASEVGPDVYSSNCMIDLYSERSMVKQAEEIFESLKRKG-DANEFSFAMMLCMYK 734

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G   +   ++  M++      +++YN V+  +   G  +     FK+M    ++P+  
Sbjct: 735 RIGKLKEAFQIVQKMRELGLVTDLLSYNNVLGFYAMDGRFKDAVGTFKEMIEAAIQPDDC 794

Query: 243 TYCSLVSAYSKAGL 256
           T+ SL     K G+
Sbjct: 795 TFKSLGVVLVKCGI 808


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 154/336 (45%), Gaps = 7/336 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  +A  +F+ M   G  P    Y  L+  Y ++  + +AF     M+      
Sbjct: 516 GLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER-EPIS 574

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  Y+ LI    K  R   +  +L EM   G+  + VTY  +IDG+ K    ++  SS
Sbjct: 575 PSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 634

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +  M E+G    +I   ++M+S     G I++      +    G   D +      KS  
Sbjct: 635 YFEMTENG-LSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF---LKSDI 690

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R     K+   +D   K F  P  + YNI I    K G ++    +F  +  +G  P++ 
Sbjct: 691 RYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNF 750

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TYC+L+  YS AG + +   +  ++    ++ +   +N +I+   ++ +V++   LF  +
Sbjct: 751 TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 810

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            ++   P+ +T+ T+I  Y  +G  +AA  L++KMI
Sbjct: 811 HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMI 846



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 149/355 (41%), Gaps = 36/355 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  + + M   G+  +V  YT L+  Y +   +DEA   +  M+  +   PD   Y +
Sbjct: 278 EAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGV 337

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  + D   ++L EM  LG++ +    N++I+GY K  +  E E   + MV+  
Sbjct: 338 LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-W 396

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD ++ N+++  Y   G+  +     ++    G++  + T N L K   R G +D  
Sbjct: 397 NLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDA 456

Query: 191 RSVMDFMQKRFFFP-----------------------------------TVVTYNIVIET 215
             +   M KR   P                                   + +T+N +I  
Sbjct: 457 LQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 516

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K G + + EE F KMK  G  P+ ITY +L+  Y KA  + +   +   +E   +   
Sbjct: 517 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPS 576

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              +N +IS   ++  + ++ +L   M  R   P+ +T+  +I  +   GM + A
Sbjct: 577 IEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKA 631



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 147/353 (41%), Gaps = 36/353 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  +++ M+  G+ P V + + +V+A+ + G +DEA   +  M+++   +P
Sbjct: 201 LVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLG-VEP 259

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY  LI         +  + +L  MS  G+  + VTY  +I GY K  K +E E   
Sbjct: 260 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 319

Query: 124 SAMVESGGCHPD-----------------------------------IFTLNSMISAYGN 148
             M E     PD                                   +F  NS+I+ Y  
Sbjct: 320 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 379

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G I + E          +K D  + N L   Y R G   +  ++ D M +    PTV+T
Sbjct: 380 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 439

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +++   + G  +   + +  M  RG+ P+ + Y +L+    K        ++ + + 
Sbjct: 440 YNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDIL 499

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
                     FN +IS   + G + +  E+F  MK+  C PD IT+ T+I  Y
Sbjct: 500 ARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGY 552



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 156/334 (46%), Gaps = 34/334 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++  + + L   M   GL P++  Y AL+  + + G+LD+AFS+  +M   +    
Sbjct: 587 LFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTE-NGLSA 645

Query: 64  DVYTYSILIKSCTKFHRFD----LIEKIL-------------AEMSYLGIECSA------ 100
           ++   S ++    +  R D    L++K++             +++ Y  I+  A      
Sbjct: 646 NIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDES 705

Query: 101 ---------VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
                    + YN  I G  K  K ++    FS M+   G  PD FT  ++I  Y  +GN
Sbjct: 706 CKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFS-MLSLKGFVPDNFTYCTLIHGYSAAGN 764

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++  +  +E    G+  +I T N L     ++   D+ + +   + ++  FP VVTYN 
Sbjct: 765 VDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNT 824

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ + K G+++   +   KM   G+ P+ +TY +L++   K G I +   +L Q+  + 
Sbjct: 825 LIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAG 884

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           V      +  ++  Y ++G+++K+ +L+  M  R
Sbjct: 885 VDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHIR 918



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 141/312 (45%), Gaps = 4/312 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+ E  +A  +   M+   LKP    Y  L+  Y + G   EAF+  + M      +
Sbjct: 376 GYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ-EGIE 434

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V TY+ L+K   +   FD   +I   M   G+    V Y+T++DG  K + FE   + 
Sbjct: 435 PTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTL 494

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +  ++  G     I T N+MIS     G + + E+ +++   +G   D  T   L   Y 
Sbjct: 495 WKDILARGFTKSRI-TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYC 553

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A    +   V   M++    P++  YN +I    K+  + ++ +   +M  RG+ PN +
Sbjct: 554 KASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIV 613

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+  + K G++ K  S   ++  + +  +    + ++S   + G +++   L   M
Sbjct: 614 TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 673

Query: 303 KERHCVPDNITF 314
            +    PD+  F
Sbjct: 674 VDHGFFPDHECF 685



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 153/340 (45%), Gaps = 12/340 (3%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  + + A  L + ML  GLK ++ +  +L++ Y + G + EA   I  M    + K
Sbjct: 341 GYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-WNLK 399

Query: 63  PDVYTYSILIKS-CTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           PD Y+Y+ L+   C + H    F+L +K+L E    GIE + +TYNT++ G  +   F++
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE----GIEPTVLTYNTLLKGLCRVGAFDD 455

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               +  M++ G   PD    ++++       N E     + +    G      T N + 
Sbjct: 456 ALQIWHLMMKRG-VAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 514

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               + G   +   + D M+     P  +TY  +I+ + KA ++ +  +    M+   + 
Sbjct: 515 SGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPIS 574

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+   Y SL+S   K+  +++V  +L ++    +  +   +  +I  + + G ++K    
Sbjct: 575 PSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 634

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  M E     + I  +TM+     LG  + A  L  KM+
Sbjct: 635 YFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMV 674



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 4/214 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           + + G CK  + + A   F ++   G  P    Y  L+  Y  +G +DEAF   ++M   
Sbjct: 719 IAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLR- 777

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               P++ TY+ LI    K    D  +++  ++   G+  + VTYNT+IDGY K    + 
Sbjct: 778 RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDA 837

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  M+E G   P + T +++I+     G+IE+  K  N+    GV + +     L 
Sbjct: 838 AFKLKDKMIEEG-ISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLV 896

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
           + Y R+G   K+  + D M  R    T +++  V
Sbjct: 897 QGYIRSGEMQKIHKLYDMMHIRCLSTTAISHKQV 930



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 139/312 (44%), Gaps = 3/312 (0%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           S  V+  ++  Y + GL   A    ++M       P + + + L+ +  K         +
Sbjct: 155 SPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRI-PSLRSCNSLLNNLVKNGETHTAHYV 213

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             +M  +GI       + +++ + K  K +E  + F   +E+ G  P+I T +S+I+ Y 
Sbjct: 214 YQQMIRVGIVPDVFMVSIMVNAFCKDGKVDE-AAGFVKKMENLGVEPNIVTYHSLINGYV 272

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTV 206
           + G++E  +      +  GV  ++ T  +L K Y +    D+   V+  MQ+     P  
Sbjct: 273 SLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDE 332

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
             Y ++I+ + + G I+       +M   G+K N     SL++ Y K G I + + ++ +
Sbjct: 333 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 392

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + + ++  D+  +N ++  Y + G   +   L   M +    P  +T+ T+++    +G 
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 327 TEAAQNLENKMI 338
            + A  + + M+
Sbjct: 453 FDDALQIWHLMM 464



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 69/350 (19%), Positives = 140/350 (40%), Gaps = 54/350 (15%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
            +P+V  Y  LV    +  + DE  + +N                 L+  C    R ++I
Sbjct: 98  FRPNVKSYCKLVHILSRGRMYDETRAYLNQ----------------LVDLCKFKDRGNVI 141

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
              L  + Y     S   ++ I+  Y +    +     F  M + G   P + + NS+++
Sbjct: 142 WDELVGV-YREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRI-PSLRSCNSLLN 199

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               +G        Y +   +G+  D+  ++I+  ++ + G  D+    +  M+     P
Sbjct: 200 NLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEP 259

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            +VTY+ +I  +   G +E  +   K M  +G+  N +TY  L+  Y K   + + + +L
Sbjct: 260 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 319

Query: 265 R--------------------------QVENSDVILD--------TPFFNC--IISAYGQ 288
           R                          +++++  +LD        T  F C  +I+ Y +
Sbjct: 320 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 379

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            G++ +   +   M + +  PD+ ++ T++  Y   G T  A NL +KM+
Sbjct: 380 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML 429


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 161/337 (47%), Gaps = 4/337 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E A+ +   M S GLKP+V  Y  ++     +    EA   +++M    DC 
Sbjct: 295 GICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQ-KDCP 353

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D  T++IL+    +    D + ++L +M   G     +TY T+I+G+ K    +E    
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             +M  S GC P+  +   ++    ++G     E+  ++    G   +  T N L     
Sbjct: 414 LKSM-SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G+ ++   ++  M      P +++Y+ VI+  GKAG  E+  E    M ++G+ PN+I
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y S+  A S+ G + KV  +   ++++ +  D   +N +IS+  +  + ++  + F  M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
               C+P+  T+  +I+   + G+ + AQ L +++ +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCS 629



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 2/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G +  +  Y A++     +    +    +++M  V DC P++ T++ LI    +   F+ 
Sbjct: 211 GCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRV-DCAPNIVTFNTLIGYLCRNGLFER 269

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + ++LA+MS  G       Y TIIDG  K    E      + M  S G  P++   N+++
Sbjct: 270 VHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLKPNVVCYNTVL 328

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
               ++   ++ E+  +E        D  T NIL   + + G+ D++  +++ M      
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCM 388

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P V+TY  VI  F K G I++     K M   G KPN+++Y  ++     AG  +  + +
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           + Q+       +   FN +I+   + G VE+  EL   M    C PD I+++T+I     
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508

Query: 324 LGMTEAAQNLENKMI 338
            G TE A  L N M+
Sbjct: 509 AGKTEEALELLNVMV 523



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 40/344 (11%)

Query: 29  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKI 87
           V  Y A+V+ Y ++G L  A      +       P+ YT+  +++  CT+    D +E +
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVPV----PPNAYTFFPVVRGLCTRGRIADALE-V 133

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKF-------EEMESS------------FSAMVE 128
           L EMS+ G       Y+ I++   ++  F       E M +              +A+ E
Sbjct: 134 LDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICE 193

Query: 129 SG---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
            G               GC  DI + N+++     +     +E+  +E   +    +I T
Sbjct: 194 QGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT 253

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L     R G+++++  V+  M +    P +  Y  +I+   K GH+E   E   +M 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G+KPN + Y +++     A    + + +L ++   D  LD   FN ++  + Q G V+
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++ EL   M    C+PD IT+ T+I  +   G+ + A  L   M
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + E+A  L  VM++ G+ P+  +Y+++  A  + G +++     +++K  +  + 
Sbjct: 506 LGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTT-IRS 564

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEME 120
           D   Y+ +I S  K    D      A M   G   +  TY  +I G    G AK+ +E+ 
Sbjct: 565 DAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELL 624

Query: 121 SSFSA 125
           S   +
Sbjct: 625 SELCS 629


>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
          Length = 633

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 162/360 (45%), Gaps = 42/360 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++E M   G K  +  Y  L++A  ++G++D+A+    DMK  + C PD YTY+ILI+  
Sbjct: 205 VYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQ-NYCDPDAYTYTILIRMS 263

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +      +L EM   G   + + YNT+I+  GK K  +E     S M+ES  C P+
Sbjct: 264 GKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIES-DCRPN 322

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNE-FNLMGVKADIQTLNILTKSYGRAGMYDKMRSV- 193
            FT + M+      G + ++    NE  ++     +    + L K+  ++G   +  SV 
Sbjct: 323 QFTYSIMLDVLSTGGQLHRL----NEILDICSGCLNRPVYSYLIKALCKSGHASEAHSVF 378

Query: 194 ----------------------------------MDFMQKRFFFPTVVTYNIVIETFGKA 219
                                             +  M ++     V  YN++    GK 
Sbjct: 379 CRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGKL 438

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
             +  M   +  M+  G+ P+  TY  ++S++ + GL+ K   +  ++E+     D   +
Sbjct: 439 KQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTY 498

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I+  G+ GD+++   LF  M+E+   PD  T++ +I+ +      + A +L ++M+A
Sbjct: 499 NSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVA 558



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 160/339 (47%), Gaps = 25/339 (7%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M GK  +  +   L E M+S+G   ++  Y  ++ A G++ ++DEA   ++ M   SDC+
Sbjct: 262 MSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIE-SDCR 320

Query: 63  PDVYTYSILIKSCT---KFHRFDLIEKILAEMSYLGIECSAV----TYNTIIDGYGKAKK 115
           P+ +TYSI++   +   + HR + I  I          CS       Y+ +I    K+  
Sbjct: 321 PNQFTYSIMLDVLSTGGQLHRLNEILDI----------CSGCLNRPVYSYLIKALCKSGH 370

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQ 172
             E  S F  M  S     D +   SM+ A  N+   EK  +  +  ++M   G+  D+ 
Sbjct: 371 ASEAHSVFCRMWNSHE-KGDRYAFVSMLEALCNA---EKTTEAIDLLHMMPEKGITTDVG 426

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
             N++  + G+      M S+ D M+     P V TYNI+I +FG+ G ++K  E F++M
Sbjct: 427 MYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEM 486

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           +    KP+ +TY S+++   K G + +   + + ++      D   ++ +I  +G++  V
Sbjct: 487 EDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKV 546

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           +    LF  M  + C+P+ +T+  ++      G T  A 
Sbjct: 547 DMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAH 585



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 100/197 (50%), Gaps = 1/197 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV  Y+++  +  K  +   +  +   M   G+     TYN +I  +G+    ++    F
Sbjct: 424 DVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELF 483

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E G C PD+ T NSMI+  G +G++++    + +    G   D+ T +IL + +G+
Sbjct: 484 EEM-EDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGK 542

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +   D   S+ D M  +   P +VTYNI+++   + G   +  ++++ +K +G+ P+SIT
Sbjct: 543 SNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTTEAHKFYETLKQQGLTPDSIT 602

Query: 244 YCSLVSAYSKAGLIMKV 260
           Y  L    S++   +++
Sbjct: 603 YSILERLESRSQRTVRI 619



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 135/314 (42%), Gaps = 5/314 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL+ +   Y  LV A+ +S  + + F     M+     K D++ Y++L+ +  K    D 
Sbjct: 178 GLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRR-KGYKLDIFAYNMLLNALAKAGMVDQ 236

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             ++  +M     +  A TY  +I   GKA K  +  S    MV S GC  ++   N++I
Sbjct: 237 AYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMV-SEGCVLNLIAYNTVI 295

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A G +  +++     ++      + +  T +I+       G   ++  ++D        
Sbjct: 296 EALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLSTGGQLHRLNEILDICSGCLNR 355

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P    Y+ +I+   K+GH  +    F +M +   K +   + S++ A   A    +   +
Sbjct: 356 P---VYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEAIDL 412

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L  +    +  D   +N I SA G+   V  M  L+ TM+    VPD  T+  MI ++  
Sbjct: 413 LHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGR 472

Query: 324 LGMTEAAQNLENKM 337
           +G+ + A  L  +M
Sbjct: 473 VGLVDKASELFEEM 486



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 108/241 (44%), Gaps = 12/241 (4%)

Query: 88  LAEMSYLGIECSAVTYNTIIDGY--GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            A  S  G    A +YN I+      +A   E M     A +E  G   +I T+N ++  
Sbjct: 106 FAATSLPGFRHDAFSYNRILVLLFSNRADPAEAMR--LIAEMERDGVPGNISTVNLLVGM 163

Query: 146 YGNSGN-IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               G  ++   KW       G++ +  T   L +++ R+    K   V + M+++ +  
Sbjct: 164 GVEVGRCLDLASKW-------GLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKL 216

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            +  YN+++    KAG +++  + F+ MK     P++ TY  L+    KAG   K  S+L
Sbjct: 217 DIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLL 276

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
            ++ +   +L+   +N +I A G+   V++   +   M E  C P+  T++ M+   +  
Sbjct: 277 EEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLSTG 336

Query: 325 G 325
           G
Sbjct: 337 G 337



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 111/280 (39%), Gaps = 46/280 (16%)

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           +++AEM   G+  +  T N ++    +  +  ++ S +       G   + +T   ++ A
Sbjct: 140 RLIAEMERDGVPGNISTVNLLVGMGVEVGRCLDLASKW-------GLRLNGYTYKCLVQA 192

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           +  S  + K  + Y +    G K DI   N+L  +  +AGM D+   V + M++ +  P 
Sbjct: 193 HLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPD 252

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRG----------------------------- 236
             TY I+I   GKAG   K     ++M   G                             
Sbjct: 253 AYTYTILIRMSGKAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLS 312

Query: 237 ------MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
                  +PN  TY  ++   S  G + +++ IL         L+ P ++ +I A  ++G
Sbjct: 313 KMIESDCRPNQFTYSIMLDVLSTGGQLHRLNEILDICSGC---LNRPVYSYLIKALCKSG 369

Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAY-NALGMTEA 329
              +   +F  M   H   D   F +M++A  NA   TEA
Sbjct: 370 HASEAHSVFCRMWNSHEKGDRYAFVSMLEALCNAEKTTEA 409



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 97/217 (44%), Gaps = 8/217 (3%)

Query: 123 FSAMVESGGCHPDIFTLNS-MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           F+A    G  H D F+ N  ++  + N  +  +  +   E    GV  +I T+N+L    
Sbjct: 106 FAATSLPGFRH-DAFSYNRILVLLFSNRADPAEAMRLIAEMERDGVPGNISTVNLLV--- 161

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
              GM  ++   +D   K        TY  +++   ++  + K  E ++KM+ +G K + 
Sbjct: 162 ---GMGVEVGRCLDLASKWGLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDI 218

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             Y  L++A +KAG++ +   +   ++ +    D   +  +I   G+AG   K   L   
Sbjct: 219 FAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEE 278

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           M    CV + I + T+I+A     M + A  + +KMI
Sbjct: 279 MVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMI 315



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 54/104 (51%)

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G++ N  TY  LV A+ ++  + K   +  ++      LD   +N +++A  +AG V++ 
Sbjct: 178 GLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQA 237

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            ++F  MK+ +C PD  T+  +I+     G T    +L  +M++
Sbjct: 238 YQVFEDMKQNYCDPDAYTYTILIRMSGKAGKTTKFVSLLEEMVS 281


>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Brachypodium distachyon]
          Length = 637

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 157/360 (43%), Gaps = 42/360 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++E M   G K  +  Y  L+ A  ++G++D+A+    DMK    C PD YTY+ILI+  
Sbjct: 208 VYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQ-KYCVPDAYTYTILIRMS 266

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +         EM   G   + + YNT+I+  GK K  +++    S M+ES  C P+
Sbjct: 267 GKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKMIES-DCQPN 325

Query: 136 IFTLNSMISAYGNSGNIEKME------------------------------------KWY 159
            FT +  +      G + ++                                     + +
Sbjct: 326 QFTYSLTLDILATEGQLHRLNEVLDICDRYLNKSIYSYLVKSLCKSGHASEAHNVFCRMW 385

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           N        A I  L +L  S    G   +   ++  M ++     +  YN+V    GK 
Sbjct: 386 NSHESGDRDAFISMLEVLCNS----GKTLEAIDLLHMMPEKGIDTDIGMYNMVFSALGKL 441

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
             +  +   F KMK  G+ P+  TY  ++S+Y + GL+ K   +  ++E S    D   +
Sbjct: 442 KQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPDVITY 501

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I+  G+ GD+++   LF  M+E+   PD  T++T+I+ +      + A +L ++MIA
Sbjct: 502 NTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIA 561



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 156/352 (44%), Gaps = 44/352 (12%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M GK  Q  +    F+ M+S G   ++  Y  ++ A G++ ++D+    ++ M   SDC+
Sbjct: 265 MSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKMIE-SDCQ 323

Query: 63  PDVYTYSI---LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           P+ +TYS+   ++ +  + HR + +  I     YL    +   Y+ ++    K+    E 
Sbjct: 324 PNQFTYSLTLDILATEGQLHRLNEVLDICDR--YL----NKSIYSYLVKSLCKSGHASEA 377

Query: 120 ESSFSAMV---ESG-------------------------------GCHPDIFTLNSMISA 145
            + F  M    ESG                               G   DI   N + SA
Sbjct: 378 HNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKGIDTDIGMYNMVFSA 437

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
            G    +  +   +++    G+  D+ T NI+  SYGR G+ DK   + + M+     P 
Sbjct: 438 LGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASSCKPD 497

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V+TYN +I   GK G +++    FK+M+ +G  P+  TY +L+  + K+  +    S+  
Sbjct: 498 VITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFD 557

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           ++     I +   +N ++    + G   +  + + TMK++   PD+IT++ +
Sbjct: 558 EMIAEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSIL 609



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 2/231 (0%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D + +++     SG   EA   ++ M        D+  Y+++  +  K  +   I  +  
Sbjct: 394 DAFISMLEVLCNSGKTLEAIDLLHMMPE-KGIDTDIGMYNMVFSALGKLKQVSFISTLFD 452

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M   GI     TYN +I  YG+    ++    F  M E+  C PD+ T N++I+  G +
Sbjct: 453 KMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEM-EASSCKPDVITYNTLINCLGKN 511

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G++++    + E    G   D+ T + L + +G++   D   S+ D M      P +VTY
Sbjct: 512 GDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTY 571

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
           NI+++   + G   +  ++++ MK +G+ P+SITY  L    S++    ++
Sbjct: 572 NILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSILERLESRSQRTARI 622



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 2/188 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK KQ    S LF+ M + G+ P +  Y  ++S+YG+ GL+D+A     +M++ S CKP
Sbjct: 438 LGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEA-SSCKP 496

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TY+ LI    K    D    +  EM   G +    TY+T+I+ +GK+ K +   S F
Sbjct: 497 DVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLF 556

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ + GC P+I T N ++      G   +  K Y      G+  D  T +IL +   R
Sbjct: 557 DEMI-AEGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSILERLESR 615

Query: 184 AGMYDKMR 191
           +    ++R
Sbjct: 616 SQRTARIR 623



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/306 (20%), Positives = 120/306 (39%), Gaps = 33/306 (10%)

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YTY  ++++  +        ++  EM   G +     YN ++D   KA   ++    F  
Sbjct: 187 YTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFED 246

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M +   C PD +T   +I   G +G   K   +++E    G   ++   N + ++ G+  
Sbjct: 247 MKQK-YCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNK 305

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNI--------------------------------VI 213
           M DK+  V+  M +    P   TY++                                ++
Sbjct: 306 MVDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLHRLNEVLDICDRYLNKSIYSYLV 365

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
           ++  K+GH  +    F +M +     +   + S++     +G  ++   +L  +    + 
Sbjct: 366 KSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLLHMMPEKGID 425

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   +N + SA G+   V  +  LF  MK     PD  T+  MI +Y  +G+ + A  L
Sbjct: 426 TDIGMYNMVFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGL 485

Query: 334 ENKMIA 339
             +M A
Sbjct: 486 FEEMEA 491



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 103/243 (42%), Gaps = 4/243 (1%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G+  +  TY  I+  + ++++  +    +  M    G   DIF  N ++ A   +G +++
Sbjct: 181 GLRLNGYTYKCIVQAHLRSREVSKGFEVYEEM-HRKGYKLDIFAYNMLLDALAKAGMVDQ 239

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             + + +        D  T  IL +  G+ G   K  S  D M  R     ++ YN VIE
Sbjct: 240 AYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIE 299

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
             GK   ++K+     KM     +PN  TY   +   +  G + +++ +L   +  D  L
Sbjct: 300 ALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLHRLNEVL---DICDRYL 356

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           +   ++ ++ +  ++G   +   +F  M   H   D   F +M++     G T  A +L 
Sbjct: 357 NKSIYSYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLEAIDLL 416

Query: 335 NKM 337
           + M
Sbjct: 417 HMM 419



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 100/225 (44%), Gaps = 11/225 (4%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN--- 151
           G    A +YN I+    ++K          A +E  G   +I T+N ++   G       
Sbjct: 113 GFRHDAFSYNRILALLFRSKADPGEALRLVAQMERDGVAGNISTVNLLVGMGGGGVEVAR 172

Query: 152 -IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            +E  +KW       G++ +  T   + +++ R+    K   V + M ++ +   +  YN
Sbjct: 173 CLELAKKW-------GLRLNGYTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYN 225

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           ++++   KAG +++  + F+ MK +   P++ TY  L+    K G   K  S   ++ + 
Sbjct: 226 MLLDALAKAGMVDQAYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQTYKFLSFFDEMVSR 285

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
              L+   +N +I A G+   V+K+  +   M E  C P+  T++
Sbjct: 286 GCALNLIAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTYS 330



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 50/95 (52%)

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           K  G++ N  TY  +V A+ ++  + K   +  ++      LD   +N ++ A  +AG V
Sbjct: 178 KKWGLRLNGYTYKCIVQAHLRSREVSKGFEVYEEMHRKGYKLDIFAYNMLLDALAKAGMV 237

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           ++  ++F  MK+++CVPD  T+  +I+     G T
Sbjct: 238 DQAYQVFEDMKQKYCVPDAYTYTILIRMSGKTGQT 272



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 3/173 (1%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           GV  +I T+N+L    G      +    ++  +K        TY  +++   ++  + K 
Sbjct: 149 GVAGNISTVNLLVGMGGGGVEVAR---CLELAKKWGLRLNGYTYKCIVQAHLRSREVSKG 205

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
            E +++M  +G K +   Y  L+ A +KAG++ +   +   ++    + D   +  +I  
Sbjct: 206 FEVYEEMHRKGYKLDIFAYNMLLDALAKAGMVDQAYQVFEDMKQKYCVPDAYTYTILIRM 265

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            G+ G   K    F  M  R C  + I + T+I+A     M +    + +KMI
Sbjct: 266 SGKTGQTYKFLSFFDEMVSRGCALNLIAYNTVIEALGKNKMVDKVIFVLSKMI 318


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 161/337 (47%), Gaps = 4/337 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E A+ +   M S GLKP+V  Y  ++     +    EA   +++M    DC 
Sbjct: 295 GICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQ-KDCP 353

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D  T++IL+    +    D + ++L +M   G     +TY T+I+G+ K    +E    
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             +M  S GC P+  +   ++    ++G     E+  ++    G   +  T N L     
Sbjct: 414 LKSM-SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G+ ++   ++  M      P +++Y+ VI+  GKAG  E+  E    M ++G+ PN+I
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y S+  A S+ G + KV  +   ++++ +  D   +N +IS+  +  + ++  + F  M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
               C+P+  T+  +I+   + G+ + AQ L +++ +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCS 629



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 2/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G +  +  Y A++     +    +    +++M  V DC P++ T++ LI    +   F+ 
Sbjct: 211 GCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRV-DCAPNIVTFNTLIGYLCRNGLFER 269

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + ++LA+MS  G       Y TIIDG  K    E      + M  S G  P++   N+++
Sbjct: 270 VHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLKPNVVCYNTVL 328

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
               ++   ++ E+  +E        D  T NIL   + + G+ D++  +++ M      
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCM 388

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P V+TY  VI  F K G I++     K M   G KPN+++Y  ++     AG  +  + +
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           + Q+       +   FN +I+   + G VE+  EL   M    C PD I+++T+I     
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508

Query: 324 LGMTEAAQNLENKMI 338
            G TE A  L N M+
Sbjct: 509 AGKTEEALELLNVMV 523



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 40/344 (11%)

Query: 29  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKI 87
           V  Y A+V+ Y ++G L  A      +       P+ YT+  +++  CT+    D +E +
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVPV----PPNAYTFFPVVRGLCTRGRIADALE-V 133

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKF-------EEMESS------------FSAMVE 128
           L EMS+ G       Y+ I++   ++  F       E M +              +A+ E
Sbjct: 134 LDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICE 193

Query: 129 SG---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
            G               GC  DI + N+++     +     +E+  +E   +    +I T
Sbjct: 194 QGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT 253

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L     R G+++++  V+  M +    P +  Y  +I+   K GH+E   E   +M 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G+KPN + Y +++     A    + + +L ++   D  LD   FN ++  + Q G V+
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++ EL   M    C+PD IT+ T+I  +   G+ + A  L   M
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + E+A  L  VM++ G+ P+  +Y+++  A  + G +++     +++K  +  + 
Sbjct: 506 LGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTT-IRS 564

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEME 120
           D   Y+ +I S  K    D      A M   G   +  TY  +I G    G AK+ +E+ 
Sbjct: 565 DAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELL 624

Query: 121 SSFSA 125
           S   +
Sbjct: 625 SELCS 629


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 161/337 (47%), Gaps = 4/337 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E A+ +   M S GLKP+V  Y  ++     +    EA   +++M    DC 
Sbjct: 295 GICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQ-KDCP 353

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D  T++IL+    +    D + ++L +M   G     +TY T+I+G+ K    +E    
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             +M  S GC P+  +   ++    ++G     E+  ++    G   +  T N L     
Sbjct: 414 LKSM-SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G+ ++   ++  M      P +++Y+ VI+  GKAG  E+  E    M ++G+ PN+I
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y S+  A S+ G + KV  +   ++++ +  D   +N +IS+  +  + ++  + F  M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
               C+P+  T+  +I+   + G+ + AQ L +++ +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCS 629



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 2/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G +  +  Y A++     +    +    +++M  V DC P++ T++ LI    +   F+ 
Sbjct: 211 GCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRV-DCAPNIVTFNTLIGYLCRNGLFER 269

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + ++LA+MS  G       Y TIIDG  K    E      + M  S G  P++   N+++
Sbjct: 270 VHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLKPNVVCYNTVL 328

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
               ++   ++ E+  +E        D  T NIL   + + G+ D++  +++ M      
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCM 388

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P V+TY  VI  F K G I++     K M   G KPN+++Y  ++     AG  +  + +
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           + Q+       +   FN +I+   + G VE+  EL   M    C PD I+++T+I     
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508

Query: 324 LGMTEAAQNLENKMI 338
            G TE A  L N M+
Sbjct: 509 AGKTEEALELLNVMV 523



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 40/344 (11%)

Query: 29  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKI 87
           V  Y A+V+ Y ++G L  A      +       P+ YT+  +++  CT+    D +E +
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVPV----PPNAYTFFPVVRGLCTRGRIADALE-V 133

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKF-------EEMESS------------FSAMVE 128
           L EMS+ G       Y+ I++   ++  F       E M +              +A+ E
Sbjct: 134 LDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICE 193

Query: 129 SG---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
            G               GC  DI + N+++     +     +E+  +E   +    +I T
Sbjct: 194 QGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT 253

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L     R G+++++  V+  M +    P +  Y  +I+   K GH+E   E   +M 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G+KPN + Y +++     A    + + +L ++   D  LD   FN ++  + Q G V+
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++ EL   M    C+PD IT+ T+I  +   G+ + A  L   M
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + E+A  L  VM++ G+ P+  +Y+++  A  + G +++     +++K  +  + 
Sbjct: 506 LGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTT-IRS 564

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEME 120
           D   Y+ +I S  K    D      A M   G   +  TY  +I G    G AK+ +E+ 
Sbjct: 565 DAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELL 624

Query: 121 SSFSA 125
           S   +
Sbjct: 625 SELCS 629


>gi|326513138|dbj|BAK06809.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 154/360 (42%), Gaps = 42/360 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++E M   G    +  Y  L+ A  +SG++D+A+    DMK    C+PD YTY+ILI+  
Sbjct: 208 VYEEMRRKGYMLDIFGYNMLLDALAKSGMVDQAYQVFEDMKQ-KYCEPDAYTYTILIRMS 266

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +         EM   G   + + YNT+I+  GK K  +++    S M+E GGC P+
Sbjct: 267 GRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIE-GGCQPN 325

Query: 136 IFTLNSMISAYGNSGNIEKME------------------------------------KWY 159
            FT +  +      G + ++                                     + +
Sbjct: 326 QFTYSITLDILAKEGQLHRLNEVLDICDRYMNKSIYSYLVKSLSKSGHVSEAHNVFCQMW 385

Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           N +      A +  L +L  S    G   +   ++  M ++     V  YN+V    GK 
Sbjct: 386 NSYETGDRDAFVSMLEVLCNS----GKTLEAIDLLHMMPEKGVATDVGMYNMVFSALGKL 441

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
             +  +   F KMK  G+ P+  TY  ++S+Y + GL+ K   +   +  S    D   +
Sbjct: 442 KQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASSCKPDVITY 501

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           N +I+  G+ GD+++   LF  M+E+   PD  T++ +I+ +      + A NL   MIA
Sbjct: 502 NSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIA 561



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 148/335 (44%), Gaps = 17/335 (5%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M G+  +  +    F+ M+S G   ++  Y  L+ A G++ ++D+    ++ M     C+
Sbjct: 265 MSGRAGKASKFLSFFDEMVSKGCALNLIAYNTLIEALGKNKMVDKVIFVLSKMIE-GGCQ 323

Query: 63  PDVYTYSILIKSCTK---FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           P+ +TYSI +    K    HR + +  I        I      Y+ ++    K+    E 
Sbjct: 324 PNQFTYSITLDILAKEGQLHRLNEVLDICDRYMNKSI------YSYLVKSLSKSGHVSEA 377

Query: 120 ESSFSAM---VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
            + F  M    E+G    D F   SM+    NSG   +     +     GV  D+   N+
Sbjct: 378 HNVFCQMWNSYETG--DRDAFV--SMLEVLCNSGKTLEAIDLLHMMPEKGVATDVGMYNM 433

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +  + G+      + S+ D M+     P + TYNI+I ++G+ G ++K    F+ M    
Sbjct: 434 VFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNASS 493

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
            KP+ ITY SL++   K G + +   + ++++      D   ++ +I  +G++  V+   
Sbjct: 494 CKPDVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMAC 553

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
            LFL M    C+P+ +T+  ++      G T  A 
Sbjct: 554 NLFLDMIAEGCIPNVVTYNILLDCLERHGKTAEAH 588



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 106/219 (48%), Gaps = 3/219 (1%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           D + +++     SG   EA   ++ M        DV  Y+++  +  K  +   I  +  
Sbjct: 394 DAFVSMLEVLCNSGKTLEAIDLLHMMPE-KGVATDVGMYNMVFSALGKLKQVSFITSLFD 452

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           +M   GI     TYN +I  YG+    ++    F  M  +  C PD+ T NS+I+  G +
Sbjct: 453 KMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDM-NASSCKPDVITYNSLINCLGKN 511

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G++++    + E    G   D+ T +IL + +G++   D   ++   M      P VVTY
Sbjct: 512 GDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLFLDMIAEGCIPNVVTY 571

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           NI+++   + G   +  ++++ MK +G+ P+SIT CS++
Sbjct: 572 NILLDCLERHGKTAEAHKHYETMKQQGLTPDSIT-CSIL 609



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 2/188 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK KQ    + LF+ M ++G+ P +  Y  ++S+YG+ GL+D+A     DM + S CKP
Sbjct: 438 LGKLKQVSFITSLFDKMKANGIAPDLFTYNIMISSYGRVGLVDKASGLFEDMNA-SSCKP 496

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TY+ LI    K    D    +  EM   G      TY+ +I+ +GK+ K +   + F
Sbjct: 497 DVITYNSLINCLGKNGDLDEAHMLFKEMQEKGYGPDVFTYSILIECFGKSNKVDMACNLF 556

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ + GC P++ T N ++      G   +  K Y      G+  D  T +IL +   R
Sbjct: 557 LDMI-AEGCIPNVVTYNILLDCLERHGKTAEAHKHYETMKQQGLTPDSITCSILERLESR 615

Query: 184 AGMYDKMR 191
           +    ++R
Sbjct: 616 SQRTVRIR 623



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 144/323 (44%), Gaps = 5/323 (1%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
            E+ +  GL+ +   Y  ++ A+ +S  + + F    +M+       D++ Y++L+ +  
Sbjct: 174 LELAMKWGLRLNGYTYKCILQAHLRSREVSKGFEVYEEMRR-KGYMLDIFGYNMLLDALA 232

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           K    D   ++  +M     E  A TY  +I   G+A K  +  S F  MV S GC  ++
Sbjct: 233 KSGMVDQAYQVFEDMKQKYCEPDAYTYTILIRMSGRAGKASKFLSFFDEMV-SKGCALNL 291

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
              N++I A G +  ++K+    ++    G + +  T +I      + G   ++  V+D 
Sbjct: 292 IAYNTLIEALGKNKMVDKVIFVLSKMIEGGCQPNQFTYSITLDILAKEGQLHRLNEVLDI 351

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
              R+   ++ +Y  ++++  K+GH+ +    F +M +     +   + S++     +G 
Sbjct: 352 CD-RYMNKSIYSY--LVKSLSKSGHVSEAHNVFCQMWNSYETGDRDAFVSMLEVLCNSGK 408

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
            ++   +L  +    V  D   +N + SA G+   V  +  LF  MK     PD  T+  
Sbjct: 409 TLEAIDLLHMMPEKGVATDVGMYNMVFSALGKLKQVSFITSLFDKMKANGIAPDLFTYNI 468

Query: 317 MIQAYNALGMTEAAQNLENKMIA 339
           MI +Y  +G+ + A  L   M A
Sbjct: 469 MISSYGRVGLVDKASGLFEDMNA 491



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 131 GCHPDIFTLNSMISA-YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G   D F+ N +++  +    +  +  +  +E    GV  +I T+N+L    G      K
Sbjct: 113 GFRHDAFSYNRILALLFRTRADPSEALRIVSEMERDGVSGNISTVNLLVGIGGGGVEVTK 172

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
               ++   K        TY  +++   ++  + K  E +++M+ +G   +   Y  L+ 
Sbjct: 173 ---CLELAMKWGLRLNGYTYKCILQAHLRSREVSKGFEVYEEMRRKGYMLDIFGYNMLLD 229

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           A +K+G++ +   +   ++      D   +  +I   G+AG   K    F  M  + C  
Sbjct: 230 ALAKSGMVDQAYQVFEDMKQKYCEPDAYTYTILIRMSGRAGKASKFLSFFDEMVSKGCAL 289

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMI 338
           + I + T+I+A     M +    + +KMI
Sbjct: 290 NLIAYNTLIEALGKNKMVDKVIFVLSKMI 318


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 151/341 (44%), Gaps = 6/341 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   E A  LF  M   G  P +  Y +L+  +G+ GLLDE       MK  +DC PD
Sbjct: 266 CKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKD-ADCDPD 324

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TY+ LI    KF R     + L EM   G++ + VTY+T ID + K    +E    F 
Sbjct: 325 VITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFV 384

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M       P+ FT  S+I A   +GN+ +  K   E    G+K ++ T   L       
Sbjct: 385 DM-RRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEE 443

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +   V   M      P   TY  ++  F KA  +E  ++  K+MK + +KP+ + Y
Sbjct: 444 GRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLY 503

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +++        + +   ++ +++ S +  +   +  ++ AY ++G   +   L   M +
Sbjct: 504 GTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD 563

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM--IAMKEN 343
              +   +T+  +I      G+ + A +   +M  I ++ N
Sbjct: 564 LGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPN 604



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 8/314 (2%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P   V+ AL SA  + G+L+EA      M+      P   + + L+   +K  R DL  K
Sbjct: 183 PGFGVFDALFSALIELGMLEEASECFLKMRKFR-VFPKPRSCNALLHRLSKVGRGDLSRK 241

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
              +M   GI+ S  TYN +ID   K    E   S F+ M E+G   PDI T NS+I  +
Sbjct: 242 FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFT-PDIVTYNSLIDGH 300

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF---MQKRFFF 203
           G  G +++    + +        D+ T N L   + +   +++M    +F   M+     
Sbjct: 301 GKLGLLDECICIFEQMKDADCDPDVITYNALINCFCK---FERMPKAFEFLHEMKANGLK 357

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P VVTY+  I+ F K G +++  ++F  M+   + PN  TY SL+ A  KAG + +   +
Sbjct: 358 PNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKL 417

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           + ++  + + L+   +  ++    + G +++  E+F  M      P+  T+  ++  +  
Sbjct: 418 VEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIK 477

Query: 324 LGMTEAAQNLENKM 337
               E A+++  +M
Sbjct: 478 AKEMEYAKDILKEM 491



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 163/399 (40%), Gaps = 71/399 (17%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           + P+    L E M ++GLKP+V  Y+  + A+ + G+L EA     DM+ V+   P+ +T
Sbjct: 340 RMPKAFEFLHE-MKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVA-LTPNEFT 397

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ LI +  K        K++ E+   GI+ + VTY  ++DG  +  + +E E  F AM+
Sbjct: 398 YTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAML 457

Query: 128 ESG---------------------------------GC-HPDIFTLNSMISAYGNSGNIE 153
            +G                                  C  PD+    +++    N   +E
Sbjct: 458 NAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLE 517

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
           + +    E    G+  +      L  +Y ++G   +  ++++ M       T VTY  +I
Sbjct: 518 EAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALI 577

Query: 214 ETFGKAG-------HIEKMEE----------------------------YFKKMKHRGMK 238
           +   K+G       H  +M E                             F +M  +GM 
Sbjct: 578 DGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMM 637

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ I Y +L+    K G + +  ++  ++    + LD   +  +I     +G V+K   L
Sbjct: 638 PDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNL 697

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              M  +  +PD + +  +I+ Y ALG  + A  L+N+M
Sbjct: 698 LDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEM 736



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 145/308 (47%), Gaps = 2/308 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+AS  F  M    + P      AL+    + G  D +     DM + +  K  V+TY+I
Sbjct: 202 EEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGA-AGIKRSVFTYNI 260

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    K    ++   +  +M   G     VTYN++IDG+GK    +E    F  M +  
Sbjct: 261 MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM-KDA 319

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C PD+ T N++I+ +     + K  ++ +E    G+K ++ T +    ++ + GM  + 
Sbjct: 320 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEA 379

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
                 M++    P   TY  +I+   KAG++ +  +  +++   G+K N +TY +L+  
Sbjct: 380 IKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDG 439

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G + + + + R + N+ V  +   +  ++  + +A ++E   ++   MKE+   PD
Sbjct: 440 LCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPD 499

Query: 311 NITFATMI 318
            + + T++
Sbjct: 500 LLLYGTIL 507



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/334 (19%), Positives = 149/334 (44%), Gaps = 2/334 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK    ++   +FE M      P V  Y AL++ + +   + +AF  +++MK+ +  KP+
Sbjct: 301 GKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKA-NGLKPN 359

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V TYS  I +  K        K   +M  + +  +  TY ++ID   KA    E      
Sbjct: 360 VVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVE 419

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            ++++ G   ++ T  +++      G +++ E+ +      GV  + +T   L   + +A
Sbjct: 420 EILQA-GIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKA 478

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              +  + ++  M+++   P ++ Y  ++        +E+ +    ++K  G+  N++ Y
Sbjct: 479 KEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIY 538

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+ AY K+G   +  ++L ++ +  +I     +  +I    ++G V++    F  M E
Sbjct: 539 TTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSE 598

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
               P+   +  ++         E A+ L ++M+
Sbjct: 599 IGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEML 632



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 90/199 (45%)

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P     +++ SA    G +E+  + + +     V    ++ N L     + G  D  R
Sbjct: 181 CVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSR 240

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
                M       +V TYNI+I+   K G +E     F +MK  G  P+ +TY SL+  +
Sbjct: 241 KFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGH 300

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K GL+ +   I  Q++++D   D   +N +I+ + +   + K  E    MK     P+ 
Sbjct: 301 GKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNV 360

Query: 312 ITFATMIQAYNALGMTEAA 330
           +T++T I A+   GM + A
Sbjct: 361 VTYSTFIDAFCKEGMLQEA 379



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 4/238 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C +   E+A LL   +   G+  +  +YT L+ AY +SG   EA + + +M  + 
Sbjct: 506 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLG 565

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
               +V TY  LI    K             MS +G++ +   Y  ++DG  K   FE  
Sbjct: 566 LIATEV-TYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVA 624

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +  F  M++ G   PD     ++I      GN+++     +    +G++ D+     L  
Sbjct: 625 KKLFDEMLDKG-MMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIW 683

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
               +G   K R+++D M  +   P  V Y  +I+ +   G +++  E   +M  RGM
Sbjct: 684 GLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGM 741



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 117/254 (46%), Gaps = 22/254 (8%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESG---------------GCHPDIFTLNSMISAY 146
           T N  + G+G        ++ FSA++E G                  P   + N+++   
Sbjct: 177 TRNVCVPGFGV------FDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRL 230

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G  +   K++ +    G+K  + T NI+     + G  +  RS+   M++  F P +
Sbjct: 231 SKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDI 290

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VTYN +I+  GK G +++    F++MK     P+ ITY +L++ + K   + K    L +
Sbjct: 291 VTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHE 350

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG- 325
           ++ + +  +   ++  I A+ + G +++  + F+ M+     P+  T+ ++I A    G 
Sbjct: 351 MKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGN 410

Query: 326 MTEAAQNLENKMIA 339
           + EA + +E  + A
Sbjct: 411 LAEALKLVEEILQA 424


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 160/327 (48%), Gaps = 8/327 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L+  M+S  + P V  Y++L+S +   G L  A    N M S  +  P+VYT+SILI   
Sbjct: 220 LYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMIS-DNINPNVYTFSILIDGF 278

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +    + +LA M    ++   VTYN+++DGY   K+  + +S F+ M + G   PD
Sbjct: 279 CKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRG-VTPD 337

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +++ + MI+ +     +++  K + E +   +  ++ T N L     ++G       ++D
Sbjct: 338 VWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVD 397

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M  R     ++TYN +++   K  H++K      K+K +G++P+  TY  L++   K G
Sbjct: 398 EMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVG 457

Query: 256 LIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
              ++D   +  E+  V   +P    +  +I+ +   G  ++   +   MK+  C+P+ I
Sbjct: 458 ---RLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAI 514

Query: 313 TFATMIQAYNALGMTEAAQNLENKMIA 339
           T+  +I +       + A+ L  +MIA
Sbjct: 515 TYEILIHSLFEKDENDKAEKLLREMIA 541



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 153/335 (45%), Gaps = 4/335 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  E  + +  +   DG  ++P+V +Y+ ++ +  +  L+++AF    +M S     
Sbjct: 172 GLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVS-KRIS 230

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TYS LI       +      +   M    I  +  T++ +IDG+ K  K  E ++ 
Sbjct: 231 PDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNV 290

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M++      D+ T NS++  Y     + K +  +N     GV  D+ + +I+   + 
Sbjct: 291 LAVMMKKN-VKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFC 349

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +  M D+   + + M  +  FP VVTYN +++   K+G      E   +M  RG   N I
Sbjct: 350 KIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNII 409

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S++ A  K   + K   +L +++   +  D   +  +I+   + G ++   ++F  +
Sbjct: 410 TYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDL 469

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   P+  T+ ++I  +   G  +    + +KM
Sbjct: 470 LVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKM 504



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 114/241 (47%), Gaps = 10/241 (4%)

Query: 2   VMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G C  KQ  +A  LF VM   G+ P V  Y+ +++ + +  ++DEA     +M    
Sbjct: 309 LMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMH--- 365

Query: 60  DCK---PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            CK   P+V TY+ L+    K  R     +++ EM   G   + +TYN+I+D   K    
Sbjct: 366 -CKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHV 424

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           ++     + + E G   PDIFT   +I+     G ++  +K + +  + G   +I T   
Sbjct: 425 DKAIVLLTKIKEKG-IQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTS 483

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   +   G +D+  +++  M+     P  +TY I+I +  +    +K E+  ++M  RG
Sbjct: 484 LINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARG 543

Query: 237 M 237
           +
Sbjct: 544 L 544



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 164/404 (40%), Gaps = 80/404 (19%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K KQ + A  L + M  +G+KP       L++ + Q G +  +FS    +       P
Sbjct: 68  LLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILK-KGYHP 126

Query: 64  DVYTYSILIKS-CTK--------FH--------RFDLIE------------------KIL 88
           D  T++ILIK  C K        FH        + D +                   ++L
Sbjct: 127 DAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLL 186

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
             +    +  + V Y+TIID   K K   +    +  MV S    PD+ T +S+IS +  
Sbjct: 187 RRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMV-SKRISPDVVTYSSLISGFCV 245

Query: 149 SGNIEKMEKWYNE------------FNLM-----------------------GVKADIQT 173
            G ++     +N             F+++                        VK D+ T
Sbjct: 246 VGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVT 305

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L   Y      +K +S+ + M +R   P V +Y+I+I  F K   +++  + F++M 
Sbjct: 306 YNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMH 365

Query: 234 HRGMKPNSITYCSLVSAYSKAG----LIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
            + + PN +TY SLV    K+G     +  VD +  + + S++I     +N I+ A  + 
Sbjct: 366 CKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIIT----YNSILDAICKN 421

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             V+K   L   +KE+   PD  T+  +I     +G  + AQ +
Sbjct: 422 NHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKV 465



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 2/179 (1%)

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           EFN  G+K D  T N+L   + + G      SV   + K+ + P  VT+ I+I+     G
Sbjct: 85  EFN--GIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKG 142

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            + K   +  K+  +G + + ++Y +L++   + G       +LR+V+   V  +   ++
Sbjct: 143 EVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYS 202

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            II +  +   V    +L+  M  +   PD +T++++I  +  +G  + A +L N+MI+
Sbjct: 203 TIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMIS 261



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/310 (18%), Positives = 121/310 (39%), Gaps = 36/310 (11%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P    +  ++ S  K  ++     +  +M + GI+   +T N +++ + +    +   S 
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSV 115

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ +++ G  HPD  T   +I      G + K   ++++    G + D  +   L     
Sbjct: 116 FAKILKKGY-HPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLC 174

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G       ++  +  +   P VV Y+ +I++  K   +    + + +M  + + P+ +
Sbjct: 175 RVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVV 234

Query: 243 TYCSLVS-----------------------------------AYSKAGLIMKVDSILRQV 267
           TY SL+S                                    + K G + +  ++L  +
Sbjct: 235 TYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVM 294

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
              +V LD   +N ++  Y     V K   LF  M +R   PD  +++ MI  +  + M 
Sbjct: 295 MKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMV 354

Query: 328 EAAQNLENKM 337
           + A  L  +M
Sbjct: 355 DEAMKLFEEM 364


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 146/363 (40%), Gaps = 36/363 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  + E +   GL P+V  YT LV  Y + G ++EA   + +MK   D   D   Y +
Sbjct: 270 EDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGM 329

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    +  R D   ++  EM   GI  +   YNT+I+G  K  + EE++     M E  
Sbjct: 330 MINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM-EDV 388

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD ++ N++I  Y   G++ K  +        G+ A   T N L K +      D  
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 191 RSVMDFMQKRFFFP-----------------------------------TVVTYNIVIET 215
             +   M KR   P                                    V+T+N VI  
Sbjct: 449 LRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVING 508

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K G + + EE   +MK     P+S+TY +L   Y K G +     ++ ++E+      
Sbjct: 509 LCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPS 568

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
              FN  I+ +  A    K+ ++   M  R   P+ +T+  +I  +   G    A NL  
Sbjct: 569 VEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYF 628

Query: 336 KMI 338
           +M+
Sbjct: 629 EMV 631



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 151/363 (41%), Gaps = 36/363 (9%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           P  A++++  M   G+ P       +  AY + G + +A   + +M+ +   + ++  Y 
Sbjct: 199 PGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMG-LEVNLVAYH 257

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            ++         +   +IL  +   G+  + VTY  ++ GY K  + EE E     M E+
Sbjct: 258 AVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKET 317

Query: 130 G-----------------------------------GCHPDIFTLNSMISAYGNSGNIEK 154
           G                                   G H ++F  N+MI+     G +E+
Sbjct: 318 GDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEE 377

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
           ++K   E   +G++ D  + N L   Y R G   K   +   M +     T +TYN +++
Sbjct: 378 VQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLK 437

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            F     I+     +  M  RG+ PN I+  +L+    KAG   +  ++ ++     +  
Sbjct: 438 GFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAK 497

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           +   FN +I+   + G + +  EL   MKE  C PD++T+ T+   Y  LG    A +L 
Sbjct: 498 NVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLM 557

Query: 335 NKM 337
           NKM
Sbjct: 558 NKM 560



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 149/332 (44%), Gaps = 3/332 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q   A  +F+ M   G +PS+     L++   QSG    A      M+ ++   PD +T 
Sbjct: 163 QLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMR-IAGVLPDEFTV 221

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I+ K+  +  R     + + EM  +G+E + V Y+ ++D Y      E+      ++ +
Sbjct: 222 AIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESL-Q 280

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMY 187
             G  P++ T   ++  Y   G +E+ E+   E    G +  D     ++   Y + G  
Sbjct: 281 RKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRM 340

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D    V + M+       +  YN +I    K G +E++++  ++M+  GM+P+  +Y +L
Sbjct: 341 DDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTL 400

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  Y + G + K   + R +  + +   T  +N ++  +     ++    L+  M +R  
Sbjct: 401 IDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGV 460

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            P+ I+ +T++      G TE A NL  + +A
Sbjct: 461 APNEISCSTLLDGLFKAGKTEQALNLWKETLA 492



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 160/361 (44%), Gaps = 28/361 (7%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + EQA  L++  L+ GL  +V  +  +++   + G + EA   ++ MK +  C P
Sbjct: 474 LFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELR-CPP 532

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY  L     K  +      ++ +M +LG   S   +N+ I G+  AK++ ++    
Sbjct: 533 DSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIH 592

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M  + G  P++ T  ++I+ +   GN+ +    Y E    G+  ++   + L   + +
Sbjct: 593 SEM-SARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYK 651

Query: 184 AGMYD--------------------------KMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
            G  D                          K+  V+D +         V +N++I    
Sbjct: 652 EGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLC 711

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           K+G I   +  F+ ++++   P++ TY SL+   + +G I +  S+   + ++ +  +  
Sbjct: 712 KSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNII 771

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +N +I    ++G + +   LF  ++ +   P+ IT+ T+I  Y   G T  A  L+ KM
Sbjct: 772 TYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKM 831

Query: 338 I 338
           +
Sbjct: 832 V 832



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 154/363 (42%), Gaps = 30/363 (8%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C++    +A  +  +M+ +GL  +   Y  L+  +     +D+A      M       
Sbjct: 403 GYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLK-RGVA 461

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+  + S L+    K  + +    +  E    G+  + +T+NT+I+G  K  +  E E  
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEEL 521

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E   C PD  T  ++   Y   G +       N+   +G    ++  N     + 
Sbjct: 522 LDRMKELR-CPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHF 580

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            A  + K+  +   M  R   P +VTY  +I  + K G++ +    + +M + GM PN  
Sbjct: 581 IAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVF 640

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVI----------------LDT-----P---- 277
              +L+S + K G + + + +L+++ N D+I                +DT     P    
Sbjct: 641 ICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSAN 700

Query: 278 -FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             +N II    ++G +     LF +++ +  +PDN T++++I    A G  + A +L + 
Sbjct: 701 VMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDV 760

Query: 337 MIA 339
           M++
Sbjct: 761 MLS 763



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 144/329 (43%), Gaps = 66/329 (20%)

Query: 2   VMLGKCKQ---PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           ++ G CK+    E  +L FE M+++G+ P+V + +AL+S + + G +DEA   +  + ++
Sbjct: 610 LIAGWCKEGNLHEACNLYFE-MVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNI 668

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            D  P     +I I         D I  ++  ++      + V +N II G  K+ +  +
Sbjct: 669 -DMIPGCSISTIEI---------DKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIAD 718

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            +S F ++  +    PD FT +S+I     SG+I                          
Sbjct: 719 AKSLFESL-RNKRFLPDNFTYSSLIHGCAASGSI-------------------------- 751

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                    D+  S+ D M      P ++TYN +I    K+G + +    F K++ +G+ 
Sbjct: 752 ---------DEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGIS 802

Query: 239 PNSITYCSLVSAYSK----------------AGLIMKVDSILRQVENSDVILDTPFFNCI 282
           PN ITY +L+  Y K                 G + +   +L Q+  ++V  +   +  +
Sbjct: 803 PNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTL 862

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           I  Y ++G++E++ +L+  M  R  +P N
Sbjct: 863 IHGYIKSGNMEEISKLYDEMHIRGLLPTN 891


>gi|449477018|ref|XP_004154904.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 567

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 147/328 (44%), Gaps = 37/328 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A L++E M++ G+ P +  YT +V+AY + G +DEAF+ + +M+  S C+P+V TY+ L
Sbjct: 239 KALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMER-SCCEPNVVTYNSL 297

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I            +K+LA MS  GI  ++ TY  +I GY K  + E+ E  F  M+E   
Sbjct: 298 IDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLFGCMMEKN- 356

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
              D      +I AY  +G ++   +  +    +G+K +    N L   Y + G  +K  
Sbjct: 357 LFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAA 416

Query: 192 SVMDFMQKRFFFP-----------------------------------TVVTYNIVIETF 216
            V+  M+     P                                   TVVTYN +++  
Sbjct: 417 EVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNL 476

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
              GH+E     +  M  RG+ PN +TYC+L+ A+ K G   +   I +   +       
Sbjct: 477 FHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSI 536

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +N +I  + +   + +  E+FL MKE
Sbjct: 537 TLYNTMICGFCKMEKLVQAQEIFLKMKE 564



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/339 (21%), Positives = 151/339 (44%), Gaps = 16/339 (4%)

Query: 7   CKQPEQASLLFEVMLS--DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM------KSV 58
           CK    AS +++ ++S       S  V+  ++  Y + G+   A    ++M       S+
Sbjct: 162 CKNNYIASAVWDELVSVYREFSFSPTVFDMILKVYAEKGMTKFALCVFDNMGKCGRVPSL 221

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C       S L+++   F    + E+++A    LGI     +Y  +++ Y K  + +E
Sbjct: 222 RSCNS---LLSNLVQNGEAFKALLVYEQMIA----LGILPDIFSYTIMVNAYCKEGRVDE 274

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
              +F   +E   C P++ T NS+I  Y + G++   +K     +  G+  + +T  +L 
Sbjct: 275 -AFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLI 333

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           K Y + G  ++   +   M ++  F     Y ++I  +  AG ++        M   G+K
Sbjct: 334 KGYCKRGQMEQAEKLFGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLK 393

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            N++   SL++ Y K G + K   +L  +++ ++  D+  +N ++  + +  D  K  +L
Sbjct: 394 MNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKL 453

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              M  +      +T+ T+++    +G  E A ++ N M
Sbjct: 454 CDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLM 492



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/277 (19%), Positives = 116/277 (41%), Gaps = 17/277 (6%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +PDV +Y  ++   ++   +  +   L E+  L   C         + Y  +  ++E+ S
Sbjct: 129 RPDVSSYCKIVHILSRARMYKEVRVYLNELVVL---CK--------NNYIASAVWDELVS 177

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +     S    P +F +  ++  Y   G  +     ++     G    +++ N L  + 
Sbjct: 178 VYREFSFS----PTVFDM--ILKVYAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNL 231

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G   K   V + M      P + +Y I++  + K G +++   + K+M+    +PN 
Sbjct: 232 VQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNV 291

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY SL+  Y   G +     +L  +    +  ++  +  +I  Y + G +E+  +LF  
Sbjct: 292 VTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLFGC 351

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           M E++   D   +  +I AY   G  + A  + + M+
Sbjct: 352 MMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAML 388


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 161/337 (47%), Gaps = 4/337 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E A+ +   M S GLKP+V  Y  ++     +    EA   +++M    DC 
Sbjct: 295 GICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQ-KDCP 353

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D  T++IL+    +    D + ++L +M   G     +TY T+I+G+ K    +E    
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVML 413

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             +M  S GC P+  +   ++    ++G     E+  ++    G   +  T N L     
Sbjct: 414 LKSM-SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLC 472

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G+ ++   ++  M      P +++Y+ VI+  GKAG  E+  E    M ++G+ PN+I
Sbjct: 473 KKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTI 532

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y S+  A S+ G + KV  +   ++++ +  D   +N +IS+  +  + ++  + F  M
Sbjct: 533 IYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYM 592

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
               C+P+  T+  +I+   + G+ + AQ L +++ +
Sbjct: 593 VSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCS 629



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 2/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G +  +  Y A++     +    +    +++M  V DC P++ T++ LI    +   F+ 
Sbjct: 211 GCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRV-DCAPNIVTFNTLIGYLCRNGLFER 269

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + ++LA+MS  G       Y TIIDG  K    E      + M  S G  P++   N+++
Sbjct: 270 VHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRM-PSYGLKPNVVCYNTVL 328

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
               ++   ++ E+  +E        D  T NIL   + + G+ D++  +++ M      
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCM 388

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P V+TY  VI  F K G I++     K M   G KPN+++Y  ++     AG  +  + +
Sbjct: 389 PDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEEL 448

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           + Q+       +   FN +I+   + G VE+  EL   M    C PD I+++T+I     
Sbjct: 449 MSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGK 508

Query: 324 LGMTEAAQNLENKMI 338
            G TE A  L N M+
Sbjct: 509 AGKTEEALELLNVMV 523



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 147/344 (42%), Gaps = 40/344 (11%)

Query: 29  VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKI 87
           V  Y A+V+ Y ++G L  A      +       P+ YT+  +++  CT+    D +E +
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAVPV----PPNAYTFFPVVRGLCTRGRIADALE-V 133

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKF-------EEMESS------------FSAMVE 128
           L EMS+ G       Y+ I++   ++  F       E M +              +A+ E
Sbjct: 134 LDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICE 193

Query: 129 SG---------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
            G               GC  DI + N+++     +     +E+  +E   +    +I T
Sbjct: 194 QGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVT 253

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L     R G+++++  V+  M +    P +  Y  +I+   K GH+E   E   +M 
Sbjct: 254 FNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMP 313

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G+KPN + Y +++     A    + + +L ++   D  LD   FN ++  + Q G V+
Sbjct: 314 SYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVD 373

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           ++ EL   M    C+PD IT+ T+I  +   G+ + A  L   M
Sbjct: 374 RVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + E+A  L  VM++ G+ P+  +Y+++  A  + G +++     +++K  +  + 
Sbjct: 506 LGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTT-IRS 564

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEME 120
           D   Y+ +I S  K    D      A M   G   +  TY  +I G    G AK+ +E+ 
Sbjct: 565 DAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELL 624

Query: 121 SSFSA 125
           S   +
Sbjct: 625 SELCS 629


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 153/346 (44%), Gaps = 16/346 (4%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    EQ   L + ML   + P V  Y AL++A+ + G   EA    ++M       P+
Sbjct: 304 GRWSDAEQ---LLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPN 359

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TYS +I    K +R D  E +   M+  G   + +T+NT+IDGY  AK+ ++      
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+G    D  T N++I  +   G++        E    G+  DI T + L       
Sbjct: 420 EMTETG-LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 185 GMYDKMRSVMDFMQK-----------RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           G       +   MQK               P V TYNI+I      G   + EE +++M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           HRG+ P++ITY S++    K   + +   +   + +     +   F  +I+ Y +AG V+
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              ELF  M  R  V + IT+ T+I  +  +G    A ++  +MI+
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 143/309 (46%), Gaps = 9/309 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS- 74
           LF  M     +P+V  +T L++   + G + EA + ++ M      +P   TY  ++   
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMME-DGLQPTQITYGTIVDGM 229

Query: 75  CTK---FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           C K       +L+ K + E+S+  I  + V Y+ IID   K  +  + ++ F+ M E G 
Sbjct: 230 CKKGDTVSALNLLRK-MEEVSH--IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG- 285

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+FT NSMI  + +SG     E+   E     +  D+ T N L  ++ + G + +  
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + D M  R   P  +TY+ +I+ F K   ++  E  F  M  +G  PN IT+ +L+  Y
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
             A  I     +L ++  + ++ DT  +N +I  +   GD+    +L   M      PD 
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDI 465

Query: 312 ITFATMIQA 320
           +T  T++  
Sbjct: 466 VTCDTLLDG 474



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 155/346 (44%), Gaps = 14/346 (4%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ ML  G+ P+   Y++++  + +   LD A      M +   C P++ T++ L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPNLITFNTL 401

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D   ++L EM+  G+     TYNT+I G+               M+ SG 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 132 CHPDIFTLNSMISAYGNSGNIEK-------MEKWYNEFN----LMGVKADIQTLNILTKS 180
           C PDI T ++++    ++G ++        M+K   + +      GV+ D+QT NIL   
Sbjct: 462 C-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T+ +L++ Y KAG +     +  ++    ++ +   +  +I  + + G++    ++F 
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 301 TMKERHCVPDNITFATMIQA-YNALGMTEAAQNLENKMIAMKENSG 345
            M      PD IT   M+   ++   +  A   LE   ++M  + G
Sbjct: 641 EMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMSMDLSFG 686



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   + A  +F +M + G  P++  +  L+  Y  +  +D+    +++M   +   
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE-TGLV 427

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D  TY+ LI         +    +L EM   G+    VT +T++DG     K ++    
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 123 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
           F  M +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T + +     +    D+   + D M  + F P VVT+  +I  + KAG ++   E F +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
             RG+  N+ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDT 651



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 146/330 (44%), Gaps = 9/330 (2%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  E A  LF  ML     PSV  +  L+    +    D   S    M+     + D+Y+
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           ++ILIK      +         +++ LG+    VT+NT++ G     +  E  + F  M 
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+  C P++ T  ++++     G I +     +     G++    T   +     + G  
Sbjct: 177 ETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG-- 233

Query: 188 DKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               S ++ ++K        P VV Y+ +I++  K G     +  F +M+ +G+ P+  T
Sbjct: 234 -DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  +  +G     + +L+++    +  D   +N +I+A+ + G   +  EL+  M 
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML 352

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            R  +P+ IT+++MI  +      +AA+++
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 128/305 (41%), Gaps = 3/305 (0%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           L S + +   L++A    +DM   S   P V  +  L+    +  R DL+  +  +M   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLR-SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
            I C   ++  +I  +    K     S+F  + + G  HPD+ T N+++        + +
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLG-LHPDVVTFNTLLHGLCVEDRVSE 167

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               +++      + ++ T   L     R G   +  +++D M +    PT +TY  +++
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227

Query: 215 TFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
              K G         +KM+    + PN + Y +++ +  K G      ++  +++   + 
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   +N +I  +  +G      +L   M ER   PD +T+  +I A+   G    A+ L
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 334 ENKMI 338
            ++M+
Sbjct: 348 YDEML 352


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 166/357 (46%), Gaps = 9/357 (2%)

Query: 1   MVMLGKCKQ---PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           +++ G CK+    +  + + E+   DG  P    +  LV+   ++G +  A   I D+  
Sbjct: 264 VIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIE-IMDVML 322

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
                PDVYTY+ +I    K        + L +M       + VTYNT+I    K  + E
Sbjct: 323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVE 382

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E  +  + ++ S G  PD+ T NS+I     + N     + + E    G + D  T N+L
Sbjct: 383 EA-TELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNML 441

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             S    G  D+  +++  M+      +V+TYN +I+ F KA  I + EE F +M+  G+
Sbjct: 442 IDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGV 501

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
             NS+TY +L+    K+  +     ++ Q+       D   +N +++ + + GD++K  +
Sbjct: 502 SRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAAD 561

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAA----QNLENKMIAMKENSGKKLIQ 350
           +   M    C PD +T+ T+I      G  E A    ++++ K IA+  ++   +IQ
Sbjct: 562 IVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQ 618



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 152/340 (44%), Gaps = 4/340 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    + A  + +VML +G  P V  Y +++S   + G + EA   ++ M +  DC 
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMIT-RDCS 362

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+  TY+ LI +  K ++ +   ++   ++  GI     T+N++I G    +        
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M  S GC PD FT N +I +  + G +++      +  L G    + T N L   + 
Sbjct: 423 FEEM-RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A    +   + D M+        VTYN +I+   K+  +E   +   +M   G KP+  
Sbjct: 482 KANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKF 541

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL++ + + G I K   I++ + ++    D   +  +IS   +AG VE   +L  ++
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
           + +        +  +IQ       T  A NL  +M+   E
Sbjct: 602 QMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNE 641



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 154/372 (41%), Gaps = 35/372 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ LG+    +    + E M + G +     +  L+ +Y Q  L DE    ++ M     
Sbjct: 90  LLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFG 149

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK----- 115
            KPD + Y+ ++      +   L+E   A+MS  GI+    T+N +I    +A +     
Sbjct: 150 LKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAI 209

Query: 116 --FEEM--------ESSFSAM----VESG---------------GCHPDIFTLNSMISAY 146
              E+M        E +F+ +    +E G               GC     ++N ++  +
Sbjct: 210 LMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF 269

Query: 147 GNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
              G +E    +  E  N  G   D  T N L     +AG       +MD M +  + P 
Sbjct: 270 CKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V TYN VI    K G +++  E+  +M  R   PN++TY +L+S   K   + +   + R
Sbjct: 330 VYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELAR 389

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            + +  ++ D   FN +I       +     ELF  M+ + C PD  T+  +I +  + G
Sbjct: 390 VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKG 449

Query: 326 MTEAAQNLENKM 337
             + A N+  +M
Sbjct: 450 KLDEALNMLKQM 461



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 125/307 (40%), Gaps = 36/307 (11%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+   Y  ++    +   FD + KIL +M   G E     +  +I+ Y + +  +E+   
Sbjct: 81  PEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEILGV 140

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M++  G  PD    N M++   +  N++ +E  + + ++ G+K D+ T N+L K+  
Sbjct: 141 VHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALC 200

Query: 183 RAGMYDKMRSVMDFMQKRFFFP-----------------------------------TVV 207
           RA        +++ M      P                                   + V
Sbjct: 201 RAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNV 260

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           + N+++  F K G +E    + ++M ++ G  P+  T+ +LV+   KAG +     I+  
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +       D   +N +IS   + G+V++  E    M  R C P+ +T+ T+I        
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQ 380

Query: 327 TEAAQNL 333
            E A  L
Sbjct: 381 VEEATEL 387



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 1/147 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ E AS L + M+ +G KP    Y +L++ + + G + +A   +  M S + C+P
Sbjct: 515 LCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTS-NGCEP 573

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+ TY  LI    K  R ++  K+L  +   GI  +   YN +I G  + +K  E  + F
Sbjct: 574 DIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLF 633

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSG 150
             M+E     PD  +   +     N G
Sbjct: 634 REMLEQNEAAPDAVSYRIVFRGLCNGG 660


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 153/346 (44%), Gaps = 16/346 (4%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    EQ   L + ML   + P V  Y AL++A+ + G   EA    ++M       P+
Sbjct: 304 GRWSDAEQ---LLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPN 359

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TYS +I    K +R D  E +   M+  G   + +T+NT+IDGY  AK+ ++      
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+G    D  T N++I  +   G++        E    G+  DI T + L       
Sbjct: 420 EMTETG-LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 185 GMYDKMRSVMDFMQK-----------RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           G       +   MQK               P V TYNI+I      G   + EE +++M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           HRG+ P++ITY S++    K   + +   +   + +     +   F  +I+ Y +AG V+
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              ELF  M  R  V + IT+ T+I  +  +G    A ++  +MI+
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 143/332 (43%), Gaps = 36/332 (10%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P V  +T L+        + EA +  + M   + C+P+V T++ L+    +  R   
Sbjct: 144 GLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETT-CRPNVVTFTTLMNGLCREGRIVE 202

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKA----------KKFEEMESS------FSAMV 127
              +L  M   G++ + +TY TI+DG  K           +K EE+         +SA++
Sbjct: 203 AVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAII 262

Query: 128 ES-------------------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
           +S                    G  PD+FT NSMI  + +SG     E+   E     + 
Sbjct: 263 DSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKIS 322

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            D+ T N L  ++ + G + +   + D M  R   P  +TY+ +I+ F K   ++  E  
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F  M  +G  PN IT+ +L+  Y  A  I     +L ++  + ++ DT  +N +I  +  
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            GD+    +L   M      PD +T  T++  
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDG 474



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 155/346 (44%), Gaps = 14/346 (4%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ ML  G+ P+   Y++++  + +   LD A      M +   C P++ T++ L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPNLITFNTL 401

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D   ++L EM+  G+     TYNT+I G+               M+ SG 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 132 CHPDIFTLNSMISAYGNSGNIEK-------MEKWYNEFN----LMGVKADIQTLNILTKS 180
           C PDI T ++++    ++G ++        M+K   + +      GV+ D+QT NIL   
Sbjct: 462 C-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T+ +L++ Y KAG +     +  ++    ++ +   +  +I  + + G++    ++F 
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 301 TMKERHCVPDNITFATMIQA-YNALGMTEAAQNLENKMIAMKENSG 345
            M      PD IT   M+   ++   +  A   LE   ++M  + G
Sbjct: 641 EMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMSMDLSFG 686



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   + A  +F +M + G  P++  +  L+  Y  +  +D+    +++M   +   
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE-TGLV 427

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D  TY+ LI         +    +L EM   G+    VT +T++DG     K ++    
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 123 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
           F  M +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T + +     +    D+   + D M  + F P VVT+  +I  + KAG ++   E F +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
             RG+  N+ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDT 651



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 145/330 (43%), Gaps = 9/330 (2%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  E A  LF  ML     PSV  +  L+    +    D   S    M+     + D+Y+
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           ++ILIK      +         +++ LG+    VT+ T++ G     +  E  + F  M 
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMF 176

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+  C P++ T  ++++     G I +     +     G++    T   +     + G  
Sbjct: 177 ETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG-- 233

Query: 188 DKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               S ++ ++K        P VV Y+ +I++  K G     +  F +M+ +G+ P+  T
Sbjct: 234 -DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  +  +G     + +L+++    +  D   +N +I+A+ + G   +  EL+  M 
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML 352

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            R  +P+ IT+++MI  +      +AA+++
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 128/305 (41%), Gaps = 3/305 (0%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           L S + +   L++A    +DM   S   P V  +  L+    +  R DL+  +  +M   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLR-SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
            I C   ++N +I  +    K     S+F  + + G  HPD+ T  +++        + +
Sbjct: 109 QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLG-LHPDVVTFTTLLHGLCVEDRVSE 167

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               +++      + ++ T   L     R G   +  +++D M +    PT +TY  +++
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227

Query: 215 TFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
              K G         +KM+    + PN + Y +++ +  K G      ++  +++   + 
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   +N +I  +  +G      +L   M ER   PD +T+  +I A+   G    A+ L
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 334 ENKMI 338
            ++M+
Sbjct: 348 YDEML 352


>gi|449447783|ref|XP_004141647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g73710-like [Cucumis sativus]
          Length = 1020

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 150/321 (46%), Gaps = 7/321 (2%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           ++  Y   GLLD A   +   +  ++  P + + +I+     K   F+     L +    
Sbjct: 467 VIKMYINEGLLDRAKILLEKYRLDTELSPRI-SAAIIDAYAEKGLWFEAESIFLWKRDLS 525

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G +   + YN +I  YGKA+ +E+    F +M ++ G  PD  T NS+I  +     +++
Sbjct: 526 GKKMDVMEYNVMIKAYGKAELYEKAFLLFKSM-KNRGTWPDECTYNSLIQMFSGGDLVDE 584

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             +   E   MG K   QT + +  SY R G+      V D M      P  + Y +++ 
Sbjct: 585 ARRLLTEMQRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVN 644

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            F + G  E+  +YF+ M+  G+  N I   SL+ A+SK G +     I  +++N +   
Sbjct: 645 GFAEIGQAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGA 704

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM----TEAA 330
           DT   N +I+ Y   G V +  ++F  ++ER    D ++FATMI  Y  +GM     E A
Sbjct: 705 DTIASNSMINLYADLGMVSEAKQVFEDLRER-GYADGVSFATMIYLYKNIGMLDEAIEVA 763

Query: 331 QNLENKMIAMKENSGKKLIQC 351
           + ++   +     S +K+I+C
Sbjct: 764 EEMKESGLLRDATSFRKVIEC 784



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 153/336 (45%), Gaps = 8/336 (2%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L   M   GL P    Y   +S Y  +G +D A      ++ V    PDV T+  L
Sbjct: 374 EAETLLLKMEERGLSPDTKTYNIFLSLYANNGNIDGALKCYRRIREVG-LFPDVVTHRAL 432

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +   ++ +  + +E ++AEM    I     +   +I  Y      +  +           
Sbjct: 433 LHVLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLEKYRLDTE 492

Query: 132 CHPDIFTLNSMISAYGNSG---NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             P I    ++I AY   G     E +  W  + +L G K D+   N++ K+YG+A +Y+
Sbjct: 493 LSPRISA--AIIDAYAEKGLWFEAESIFLW--KRDLSGKKMDVMEYNVMIKAYGKAELYE 548

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K   +   M+ R  +P   TYN +I+ F     +++      +M+  G KP   T+ +++
Sbjct: 549 KAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVI 608

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           ++Y++ GL+     +   + ++DV  +   +  +++ + + G  E+  + F  M++    
Sbjct: 609 ASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFRLMEKSGIA 668

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
            + I   ++I+A++ +G  E A+ + N+M  M++ +
Sbjct: 669 ENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGA 704



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/364 (20%), Positives = 165/364 (45%), Gaps = 24/364 (6%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ ++ ++  L +  M  +G+ P+ + Y  L+  YG+ GL+ EA   I  M +V    P
Sbjct: 171 LGQAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVYGKVGLVKEALLWIKHM-TVRGIFP 229

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  T + +++       FD  +K   +     +E +    N+ ++ +G     E +    
Sbjct: 230 DEVTMNTVVRVLKDAGEFDSADKFYKDWCRGLVELNDFDLNSRVEDFGVNSAVEPITPKH 289

Query: 124 SAMVE---------SGGCHPDI----------FTLNSMISAYGNSGNIEKMEKWYNEFNL 164
             + E         +    P++           T N++I  YG +G ++     + E   
Sbjct: 290 FLLTELFRIGTRIPNRKVSPEVDNCVRKPRLTSTYNTLIDLYGKAGRLKDAANVFGEMLT 349

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G+  D  T N +  + G  G   +  +++  M++R   P   TYNI +  +   G+I+ 
Sbjct: 350 TGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERGLSPDTKTYNIFLSLYANNGNIDG 409

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
             + +++++  G+ P+ +T+ +L+   S+  ++  V++++ ++E S ++LD      +I 
Sbjct: 410 ALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVIAEMEKSHILLDEHSLPRVIK 469

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
            Y   G +++   L    +    +   I+ A +I AY   G+   A+++    +  ++ S
Sbjct: 470 MYINEGLLDRAKILLEKYRLDTELSPRIS-AAIIDAYAEKGLWFEAESI---FLWKRDLS 525

Query: 345 GKKL 348
           GKK+
Sbjct: 526 GKKM 529



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 166/400 (41%), Gaps = 69/400 (17%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK +  E+A LLF+ M + G  P    Y +L+  +    L+DEA   + +M+ +   KP 
Sbjct: 542 GKAELYEKAFLLFKSMKNRGTWPDECTYNSLIQMFSGGDLVDEARRLLTEMQRMG-FKPT 600

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             T+S +I S  +        ++   M +  +E + + Y  +++G+ +  + EE    F 
Sbjct: 601 CQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFR 660

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +SG     I  L S+I A+   G++E   + YN    M   AD    N +   Y   
Sbjct: 661 LMEKSGIAENQI-VLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASNSMINLYADL 719

Query: 185 GMYDKMRSVMDFMQKRFF-----FPTVV-----------------------------TYN 210
           GM  + + V + +++R +     F T++                             ++ 
Sbjct: 720 GMVSEAKQVFEDLRERGYADGVSFATMIYLYKNIGMLDEAIEVAEEMKESGLLRDATSFR 779

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS--------------------- 249
            VIE +   G + +  E   +M  R + P++ T+  L +                     
Sbjct: 780 KVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIPLEAVSQLESAFHE 839

Query: 250 --AYSKAGLIMKVDSIL----RQVENSDVIL------DTPFFNCIISAYGQAGDVEKMGE 297
              Y++  +I  V S L      +E+ D  L      D+  +N  I AYG A  ++K   
Sbjct: 840 EKTYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYAYGAAEKIDKALN 899

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +F+ MK+++  PD +T+  ++  Y   GM E  + + +++
Sbjct: 900 IFMKMKDQNLKPDLVTYINLVGCYGKAGMIEGVKQIYSQL 939



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 150/320 (46%), Gaps = 27/320 (8%)

Query: 56  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
           KS  D  P+V  Y+I++++  +  ++D +     EM+  G+  +  TY  +ID YGK   
Sbjct: 152 KSQKDYVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVYGKVGL 211

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY----------NEFNL- 164
            +E       M    G  PD  T+N+++    ++G  +  +K+Y          N+F+L 
Sbjct: 212 VKEALLWIKHMTVR-GIFPDEVTMNTVVRVLKDAGEFDSADKFYKDWCRGLVELNDFDLN 270

Query: 165 -----MGVKADIQTLN----ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV-TYNIVIE 214
                 GV + ++ +     +LT+ + R G     R V   +      P +  TYN +I+
Sbjct: 271 SRVEDFGVNSAVEPITPKHFLLTELF-RIGTRIPNRKVSPEVDNCVRKPRLTSTYNTLID 329

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            +GKAG ++     F +M   G+  ++IT+ +++      G + + +++L ++E   +  
Sbjct: 330 LYGKAGRLKDAANVFGEMLTTGISMDTITFNTMIYTCGSHGHLAEAETLLLKMEERGLSP 389

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN-- 332
           DT  +N  +S Y   G+++   + +  ++E    PD +T   ++   +   M E  +N  
Sbjct: 390 DTKTYNIFLSLYANNGNIDGALKCYRRIREVGLFPDVVTHRALLHVLSERNMVEDVENVI 449

Query: 333 --LENKMIAMKENSGKKLIQ 350
             +E   I + E+S  ++I+
Sbjct: 450 AEMEKSHILLDEHSLPRVIK 469



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 127/314 (40%), Gaps = 36/314 (11%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E+A   F +M   G+  +  V T+L+ A+ + G L++A    N MK++ D    + + 
Sbjct: 651 QAEEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASN 710

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           S +I            +++  ++   G     V++ T+I  Y      +E       M E
Sbjct: 711 S-MINLYADLGMVSEAKQVFEDLRERGY-ADGVSFATMIYLYKNIGMLDEAIEVAEEMKE 768

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL----------- 177
           SG    D  +   +I  Y  +G + +  +  +E     +  D +T N+L           
Sbjct: 769 SGLLR-DATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLFTILKKGVIPL 827

Query: 178 ------------TKSYGRA----------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
                        K+Y R           G++       D   K         YN+ I  
Sbjct: 828 EAVSQLESAFHEEKTYARQAIIAAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYA 887

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
           +G A  I+K    F KMK + +KP+ +TY +LV  Y KAG+I  V  I  Q++  ++ L+
Sbjct: 888 YGAAEKIDKALNIFMKMKDQNLKPDLVTYINLVGCYGKAGMIEGVKQIYSQLKYGEIELN 947

Query: 276 TPFFNCIISAYGQA 289
              F  II+ +  A
Sbjct: 948 KSLFFAIINTFRSA 961



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 50/104 (48%)

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
           F  ++ + P V+ YNIV+ T G+A   +++   + +M   G+ P + TY  L+  Y K G
Sbjct: 151 FKSQKDYVPNVIHYNIVLRTLGQAQKWDELRLCWNEMAENGVVPTNNTYGMLIDVYGKVG 210

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           L+ +    ++ +    +  D    N ++     AG+ +   + +
Sbjct: 211 LVKEALLWIKHMTVRGIFPDEVTMNTVVRVLKDAGEFDSADKFY 254


>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
          Length = 1005

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 145/300 (48%), Gaps = 4/300 (1%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +Y +++ AY + G  +EA+    ++      +  V + S ++ +   + +    E ++  
Sbjct: 645 IYISMIDAYAKCGKAEEAYHLYEEVTG-KGIELGVVSISKVVHALANYGKHQEAENVIRR 703

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
               G+E   V YNT I+    A +     S +  MV S G  P I T N+MIS YG   
Sbjct: 704 SFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMV-SLGVAPSIQTYNTMISVYGRGR 762

Query: 151 NIEKMEKWYNEFNL--MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            ++K  + +N+     +GV  D +T   L   YG+AG   +   +   MQ+    P  V+
Sbjct: 763 KLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVS 822

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YNI+I  +  AG   + +E F+ M   G  P+S+TY +L+ AY+++   ++ +  +  ++
Sbjct: 823 YNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQ 882

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
           N  V+     FN ++SA+ +AG  E+   ++ T+      PD   + TM++ Y   G  E
Sbjct: 883 NEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVE 942



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 151/338 (44%), Gaps = 5/338 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKP 63
            KC + E+A  L+E +   G++  V   + +V A    G   EA + I   +S  D  + 
Sbjct: 654 AKCGKAEEAYHLYEEVTGKGIELGVVSISKVVHALANYGKHQEAENVIR--RSFEDGLEL 711

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   Y+  I +     R      I   M  LG+  S  TYNT+I  YG+ +K ++    F
Sbjct: 712 DTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMF 771

Query: 124 SAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +    SG G   D  T  ++IS YG +G   +    + E    G+K    + NI+   Y 
Sbjct: 772 NKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYA 831

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
            AG++ + + +   M +    P  +TY  +I  + ++    + EE    M++ G+ P+ +
Sbjct: 832 TAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCV 891

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            +  L+SA++KAG   + + +   + ++ +  D   +  ++  Y   G VEK    F  +
Sbjct: 892 HFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQI 951

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           +E    PD    ++ +  Y   G    A+ + + M ++
Sbjct: 952 RE-SVEPDRFIMSSAVHFYKLAGKELEAEGILDSMKSL 988



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 137/311 (44%), Gaps = 10/311 (3%)

Query: 33  TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 92
            +L++ YG+   L +A   I    ++  C      Y  +I +  K  + +    +  E++
Sbjct: 614 ASLITLYGKQHKLKKA---IEVFSAIEGCTSGKLIYISMIDAYAKCGKAEEAYHLYEEVT 670

Query: 93  YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152
             GIE   V+ + ++       K +E E+      E G    D    N+ I+A   +G +
Sbjct: 671 GKGIELGVVSISKVVHALANYGKHQEAENVIRRSFEDG-LELDTVAYNTFINAMLGAGRL 729

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV----T 208
                 Y+    +GV   IQT N +   YGR    DK  +V  F + R     V     T
Sbjct: 730 HFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDK--AVEMFNKARCSGVGVSLDEKT 787

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y  +I  +GKAG   +    F++M+  G+KP  ++Y  +++ Y+ AGL  +   + + + 
Sbjct: 788 YTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAML 847

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
                 D+  +  +I AY Q+    +  E  ++M+    +P  + F  ++ A+   G TE
Sbjct: 848 RDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTE 907

Query: 329 AAQNLENKMIA 339
            A+ + + +++
Sbjct: 908 EAERVYHTLLS 918



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 124/279 (44%), Gaps = 25/279 (8%)

Query: 94  LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153
           L  + S + Y  ++  YG+  K +  E +F  M+E+G C PD     +M+  Y   G  +
Sbjct: 186 LSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAG-CEPDEVACGTMLCTYARWGRHK 244

Query: 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF----------------- 196
            M  +Y+     G+   I   N +  S  +  ++ K   V+DF                 
Sbjct: 245 AMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHGK---VIDFSLVKDGLVEESFKTFYE 301

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M+   F P  VTY+++I    K G+ ++  + ++ M++R + P++ T  SL++ Y K G 
Sbjct: 302 MKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGD 361

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
             +  S+  ++E + ++ D   +  +I  YG+ G  E   + F   ++   + +  T+  
Sbjct: 362 YSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIA 421

Query: 317 MIQAYNALGMTEAA----QNLENKMIAMKENSGKKLIQC 351
           M Q +   G  E A    + + ++ I     S   L+QC
Sbjct: 422 MAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVLLQC 460



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 22/349 (6%)

Query: 2   VMLGKCKQPEQASLLFEVM-LSDGLKPSVDVYTALVSAYGQSG---LLDEAFSTINDMKS 57
           V+L + +   QA   F  M L    +PSV VYT L+  YGQ G   L ++AF  + +   
Sbjct: 164 VVLKEQRGWRQARDFFGWMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLE--- 220

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG------YG 111
            + C+PD      ++ +  ++ R   +    + +   GI  S   +N ++        +G
Sbjct: 221 -AGCEPDEVACGTMLCTYARWGRHKAMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHG 279

Query: 112 KAKKFEEM-----ESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
           K   F  +     E SF    E  + G  P+  T + +IS    +GN ++  K Y +   
Sbjct: 280 KVIDFSLVKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRY 339

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
             +     T   L   Y + G Y +  S+   M+K       V Y ++I  +GK G  E 
Sbjct: 340 RRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYED 399

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
            E+ FK+ +  G+  N  TY ++   +  +G   K  +I+  + + ++      +  ++ 
Sbjct: 400 AEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVLLQ 459

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            Y    D+      F  +  +  +PD  +   M+  Y  L + E A++ 
Sbjct: 460 CYVMKEDLASAEATFQAL-SKTGLPDAGSCNDMLNLYIKLDLLEKAKDF 507



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 152/377 (40%), Gaps = 58/377 (15%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E++   F  M + G  P    Y+ L+S   ++G  DEA     DM+      P  YT + 
Sbjct: 293 EESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMR-YRRIVPSNYTCAS 351

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K   +     + +EM    I    V Y  +I  YGK   +E+ E +F    E  
Sbjct: 352 LLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKE-TEQL 410

Query: 131 GCHPDIFTLNSMISAYGNSGNIEK----MEK------WYNEFNLMGV------KADIQTL 174
           G   +  T  +M   + NSGN EK    ME       W++ F+ + +      K D+ + 
Sbjct: 411 GLLTNEKTYIAMAQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVLLQCYVMKEDLASA 470

Query: 175 NILTKSYGRAGMYD--------KMRSVMDFMQKR--FFFPT---VVTYNI-----VIETF 216
               ++  + G+ D         +   +D ++K   F F      V +++     V++ +
Sbjct: 471 EATFQALSKTGLPDAGSCNDMLNLYIKLDLLEKAKDFIFQIRKDPVEFDMELCKTVMKVY 530

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNS-------------------ITYCS-LVSAYSKAGL 256
            K G +   ++  ++M   G+  +S                   ++  S L+S +++ G 
Sbjct: 531 CKKGMLRDAKQLIQEMGTNGLFKDSEFIQTLSLILKMLLKTAGGLSVASHLISKFTREGD 590

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           I K  ++  Q+       +      +I+ YG+   ++K  E+F  ++   C    + + +
Sbjct: 591 ISKAQNLNDQLVKLGRGAEDASIASLITLYGKQHKLKKAIEVFSAIE--GCTSGKLIYIS 648

Query: 317 MIQAYNALGMTEAAQNL 333
           MI AY   G  E A +L
Sbjct: 649 MIDAYAKCGKAEEAYHL 665


>gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
            [Vitis vinifera]
          Length = 1071

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 145/300 (48%), Gaps = 4/300 (1%)

Query: 31   VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
            +Y +++ AY + G  +EA+    ++      +  V + S ++ +   + +    E ++  
Sbjct: 711  IYISMIDAYAKCGKAEEAYHLYEEVTG-KGIELGVVSISKVVHALANYGKHQEAENVIRR 769

Query: 91   MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
                G+E   V YNT I+    A +     S +  MV S G  P I T N+MIS YG   
Sbjct: 770  SFEDGLELDTVAYNTFINAMLGAGRLHFANSIYDRMV-SLGVAPSIQTYNTMISVYGRGR 828

Query: 151  NIEKMEKWYNEFNL--MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
             ++K  + +N+     +GV  D +T   L   YG+AG   +   +   MQ+    P  V+
Sbjct: 829  KLDKAVEMFNKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVS 888

Query: 209  YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
            YNI+I  +  AG   + +E F+ M   G  P+S+TY +L+ AY+++   ++ +  +  ++
Sbjct: 889  YNIMINVYATAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQ 948

Query: 269  NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
            N  V+     FN ++SA+ +AG  E+   ++ T+      PD   + TM++ Y   G  E
Sbjct: 949  NEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVE 1008



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 151/338 (44%), Gaps = 5/338 (1%)

Query: 5    GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKP 63
             KC + E+A  L+E +   G++  V   + +V A    G   EA + I   +S  D  + 
Sbjct: 720  AKCGKAEEAYHLYEEVTGKGIELGVVSISKVVHALANYGKHQEAENVIR--RSFEDGLEL 777

Query: 64   DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            D   Y+  I +     R      I   M  LG+  S  TYNT+I  YG+ +K ++    F
Sbjct: 778  DTVAYNTFINAMLGAGRLHFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMF 837

Query: 124  SAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            +    SG G   D  T  ++IS YG +G   +    + E    G+K    + NI+   Y 
Sbjct: 838  NKARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYA 897

Query: 183  RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             AG++ + + +   M +    P  +TY  +I  + ++    + EE    M++ G+ P+ +
Sbjct: 898  TAGLHHEAQELFQAMLRDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCV 957

Query: 243  TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
             +  L+SA++KAG   + + +   + ++ +  D   +  ++  Y   G VEK    F  +
Sbjct: 958  HFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVEKGITFFEQI 1017

Query: 303  KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +E    PD    ++ +  Y   G    A+ + + M ++
Sbjct: 1018 RE-SVEPDRFIMSSAVHFYKLAGKELEAEGILDSMKSL 1054



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 137/311 (44%), Gaps = 10/311 (3%)

Query: 33  TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMS 92
            +L++ YG+   L +A   I    ++  C      Y  +I +  K  + +    +  E++
Sbjct: 680 ASLITLYGKQHKLKKA---IEVFSAIEGCTSGKLIYISMIDAYAKCGKAEEAYHLYEEVT 736

Query: 93  YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152
             GIE   V+ + ++       K +E E+      E G    D    N+ I+A   +G +
Sbjct: 737 GKGIELGVVSISKVVHALANYGKHQEAENVIRRSFEDG-LELDTVAYNTFINAMLGAGRL 795

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV----T 208
                 Y+    +GV   IQT N +   YGR    DK  +V  F + R     V     T
Sbjct: 796 HFANSIYDRMVSLGVAPSIQTYNTMISVYGRGRKLDK--AVEMFNKARCSGVGVSLDEKT 853

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y  +I  +GKAG   +    F++M+  G+KP  ++Y  +++ Y+ AGL  +   + + + 
Sbjct: 854 YTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNIMINVYATAGLHHEAQELFQAML 913

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
                 D+  +  +I AY Q+    +  E  ++M+    +P  + F  ++ A+   G TE
Sbjct: 914 RDGCSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTE 973

Query: 329 AAQNLENKMIA 339
            A+ + + +++
Sbjct: 974 EAERVYHTLLS 984



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 124/269 (46%), Gaps = 1/269 (0%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +P V  Y+IL++   +  +  L E+   EM   G E   V   T++  Y +  + + M S
Sbjct: 189 QPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVACGTMLCTYARWGRHKAMLS 248

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +SA V+  G  P I   N M+S+        K+   + E    GV  +  T  ++  S 
Sbjct: 249 FYSA-VQERGIIPSIAVFNFMLSSLQKKSLHGKVIDLWREMVDKGVVPNSFTYTVVISSL 307

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G+ ++       M+   F P  VTY+++I    K G+ ++  + ++ M++R + P++
Sbjct: 308 VKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSN 367

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T  SL++ Y K G   +  S+  ++E + ++ D   +  +I  YG+ G  E   + F  
Sbjct: 368 YTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKE 427

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAA 330
            ++   + +  T+  M Q +   G  E A
Sbjct: 428 TEQLGLLTNEKTYIAMAQVHLNSGNFEKA 456



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 110/236 (46%), Gaps = 11/236 (4%)

Query: 109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
           G+ +A+ F      F  M       P +     ++  YG  G I+  E+ + E    G +
Sbjct: 171 GWRQARDF------FGWMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLEAGCE 224

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            D      +  +Y R G +  M S    +Q+R   P++  +N ++ +  K     K+ + 
Sbjct: 225 PDEVACGTMLCTYARWGRHKAMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVIDL 284

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           +++M  +G+ PNS TY  ++S+  K GL+ +      +++N   + +   ++ +IS   +
Sbjct: 285 WREMVDKGVVPNSFTYTVVISSLVKDGLVEESFKTFYEMKNLGFVPEEVTYSLLISLSSK 344

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL-----ENKMIA 339
            G+ ++  +L+  M+ R  VP N T A+++  Y   G    A +L     +NK++A
Sbjct: 345 TGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVA 400



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 144/368 (39%), Gaps = 39/368 (10%)

Query: 2   VMLGKCKQPEQASLLFEVM-LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           V+L + +   QA   F  M L    +PSV VYT L+  YGQ G +  A     +M   + 
Sbjct: 164 VVLKEQRGWRQARDFFGWMKLQLSYQPSVIVYTILLRVYGQVGKIKLAEQAFLEMLE-AG 222

Query: 61  CKPD-----------------------------------VYTYSILIKSCTKFHRFDLIE 85
           C+PD                                   +  ++ ++ S  K      + 
Sbjct: 223 CEPDEVACGTMLCTYARWGRHKAMLSFYSAVQERGIIPSIAVFNFMLSSLQKKSLHGKVI 282

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +  EM   G+  ++ TY  +I    K    EE   +F  M ++ G  P+  T + +IS 
Sbjct: 283 DLWREMVDKGVVPNSFTYTVVISSLVKDGLVEESFKTFYEM-KNLGFVPEEVTYSLLISL 341

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
              +GN ++  K Y +     +     T   L   Y + G Y +  S+   M+K      
Sbjct: 342 SSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVAD 401

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
            V Y ++I  +GK G  E  E+ FK+ +  G+  N  TY ++   +  +G   K  +I+ 
Sbjct: 402 EVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNFEKALTIME 461

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            + + ++      +  ++  Y    D+      F  +  +  +PD  +   M+  Y  L 
Sbjct: 462 LMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQAL-SKTGLPDAGSCNDMLNLYIKLD 520

Query: 326 MTEAAQNL 333
           + E A++ 
Sbjct: 521 LLEKAKDF 528



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 69/354 (19%), Positives = 140/354 (39%), Gaps = 39/354 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  M  + +     +Y  L+  YG+ GL ++A  T  + + +     +  TY  +
Sbjct: 385 RAVSLFSEMEKNKIVADEVIYGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNE-KTYIAM 443

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
            +       F+    I+  M    I  S  +Y  ++  Y   +     E++F A+ ++G 
Sbjct: 444 AQVHLNSGNFEKALTIMELMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQALSKTG- 502

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD  + N M++ Y     +EK + +  +     V+ D++    + K Y + GM    +
Sbjct: 503 -LPDAGSCNDMLNLYIKLDLLEKAKDFIFQIRKDPVEFDMELCKTVMKVYCKKGMLRDAK 561

Query: 192 SVMDFMQKRFFFP------------------------TVVTYN--------IVIETFGKA 219
            ++  M     F                         TV   N        +++  + + 
Sbjct: 562 QLIQEMGTNGLFKDSEFIQTLSLVMHEESERPDYVDDTVEALNQNNTLALELMLGLYSEV 621

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G+  K+EE  K +       +  ++  L+S +++ G I K  ++  Q+       +    
Sbjct: 622 GNACKVEEILKMLLKTAGGLSVASH--LISKFTREGDISKAQNLNDQLVKLGRGAEDASI 679

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             +I+ YG+   ++K  E+F  ++   C    + + +MI AY   G  E A +L
Sbjct: 680 ASLITLYGKQHKLKKAIEVFSAIE--GCTSGKLIYISMIDAYAKCGKAEEAYHL 731


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 146/317 (46%), Gaps = 4/317 (1%)

Query: 23  DGLK--PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80
           DG+   PS   Y  L+ A    G + +A   +++M     C PDV TY+IL+++  K   
Sbjct: 144 DGMPVLPSAYAYNPLMHALCVRGQVRDALVLLDNML-YRGCAPDVVTYNILLEAACKGRG 202

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
           +    +++  M   G   + VTYN I+DG  +    +      +++  S GC P+    N
Sbjct: 203 YRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSL-PSYGCTPNTVNYN 261

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           +++     +G  E +E+   E           TL+++  S  + G++ +   +++ M K 
Sbjct: 262 TVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKH 321

Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
                +VTYN V+    + GH++        M+  G KPN  TY  LV     A      
Sbjct: 322 DCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDA 381

Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           + ++ ++  +D + D   FN II    Q G   +  E+F  M E+ C P+++T++++I+ 
Sbjct: 382 EDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEG 441

Query: 321 YNALGMTEAAQNLENKM 337
               G  E +  L N+M
Sbjct: 442 LAKTGKMEQSLELLNEM 458



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 147/335 (43%), Gaps = 5/335 (1%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           ++M G C++ +   A  L   + S G  P+   Y  ++     +G  ++    I +M S 
Sbjct: 227 VIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFS- 285

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            +C P   T S++I S  +   F    ++L +MS      + VTYN ++ G  +    + 
Sbjct: 286 ENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDG 345

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                S M ++ GC P+IFT N ++    N+   E  E    + +      DI T N + 
Sbjct: 346 ALYLLSNM-QTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTII 404

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               + G+  +   V   M ++   P  VTY+ VIE   K G +E+  E   +M  +G  
Sbjct: 405 GFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFN 464

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P  I Y  L    ++   +++   ++ +++++ +      +N I+    + G  ++  ++
Sbjct: 465 P-EINYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDI 523

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
              M    C+PD  T++ +IQ     G  + A+ L
Sbjct: 524 LSNMVSDGCMPDESTYSILIQGLAHEGYMKEAREL 558



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 135/314 (42%), Gaps = 3/314 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q   A +L + ML  G  P V  Y  L+ A  +     +A   I D+  V  C P   TY
Sbjct: 167 QVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELI-DLMRVEGCTPTNVTY 225

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           ++++    +    D   ++L  +   G   + V YNT++ G   A ++E++E   + M  
Sbjct: 226 NVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMF- 284

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           S  C P   TL+ +IS+    G  ++  +   + +     A+I T N +       G  D
Sbjct: 285 SENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVD 344

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
               ++  MQ     P + TYNI+++    A   E  E+   KM      P+ +T+ +++
Sbjct: 345 GALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTII 404

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               + GL M+   + +Q+       ++  ++ +I    + G +E+  EL   M  +   
Sbjct: 405 GFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFN 464

Query: 309 PDNITFATMIQAYN 322
           P+ I +  + +  N
Sbjct: 465 PE-INYHLLAECLN 477



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 3/270 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L E M       ++  Y A+VS   + G +D A   +++M++   CKP+++TY+I
Sbjct: 309 QRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQT-DGCKPNIFTYNI 367

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+K      R++  E ++A+MS        +T+NTII    +     +    F  M E G
Sbjct: 368 LVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKG 427

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P+  T +S+I     +G +E+  +  NE    G   +I   ++L +         + 
Sbjct: 428 CC-PNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKGFNPEIN-YHLLAECLNEEDKLVEA 485

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  +Q     P  V YN ++    + G  ++  +    M   G  P+  TY  L+  
Sbjct: 486 IQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQG 545

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            +  G + +   +L  + + DVI+D    N
Sbjct: 546 LAHEGYMKEARELLSTLSSRDVIVDNLIKN 575



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 124/303 (40%), Gaps = 13/303 (4%)

Query: 36  VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYL 94
           +S+    G LD A   +      S C PDV   + L++  C +    D    + A     
Sbjct: 63  LSSLVHRGELDAALRVVES----SLCPPDVALANRLVRDLCRRGRPADAARVVEA----C 114

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G   +AVTY+ + DGY +  + +E       M       P  +  N ++ A    G +  
Sbjct: 115 GSAATAVTYSALADGYCRVGRLDEARRVVDGM----PVLPSAYAYNPLMHALCVRGQVRD 170

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
                +     G   D+ T NIL ++  +   Y +   ++D M+     PT VTYN++++
Sbjct: 171 ALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMD 230

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
              + G ++   E    +   G  PN++ Y +++     AG    V+ ++ ++ + +   
Sbjct: 231 GMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPP 290

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
                + +IS+  Q G  ++   L   M +  C  + +T+  ++      G  + A  L 
Sbjct: 291 SEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLL 350

Query: 335 NKM 337
           + M
Sbjct: 351 SNM 353



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 17/227 (7%)

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E++++   +VES  C PD+   N ++      G      +        G  A   T + L
Sbjct: 71  ELDAALR-VVESSLCPPDVALANRLVRDLCRRGRPADAARV---VEACGSAATAVTYSAL 126

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              Y R G  D+ R V+D M      P+   YN ++      G +         M +RG 
Sbjct: 127 ADGYCRVGRLDEARRVVDGMP---VLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGC 183

Query: 238 KPNSITYCSLVSAYSKA-GLIMKVDSI-LRQVENSDVILDTPF---FNCIISAYGQAGDV 292
            P+ +TY  L+ A  K  G    ++ I L +VE       TP    +N I+    + GDV
Sbjct: 184 APDVVTYNILLEAACKGRGYRQAMELIDLMRVEGC-----TPTNVTYNVIMDGMCREGDV 238

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +   EL  ++    C P+ + + T+++     G  E  + L  +M +
Sbjct: 239 DYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFS 285


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 153/322 (47%), Gaps = 2/322 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M+     PS+  ++ ++S   +S   D   S  + M+ V     D+Y+Y+I+I   
Sbjct: 56  LFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHME-VCGIGHDLYSYNIVINCL 114

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  RF +   ++ +M   G E   VT +++I+G+ +  +  +     S M E  G  PD
Sbjct: 115 CRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM-EEMGFRPD 173

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +   N++I      G +    + ++     GV+AD  T N L      +G +     +M 
Sbjct: 174 VVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMR 233

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M  R   P V+T+  VI+ F K G   +  + +++M  R + P+  TY SL++     G
Sbjct: 234 DMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHG 293

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   +L  +     + D   +N +I+ + ++  V++  +LF  M +R  V D IT+ 
Sbjct: 294 RVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYN 353

Query: 316 TMIQAYNALGMTEAAQNLENKM 337
           T+IQ Y   G  +AAQ + ++M
Sbjct: 354 TIIQGYFQAGRPDAAQEIFSRM 375



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 161/366 (43%), Gaps = 34/366 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +C +   A  +   M+  G +P V   ++L++ + Q   + +A   ++ M+ +   +P
Sbjct: 114 LCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG-FRP 172

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV  Y+ +I    K    +   ++   M   G+   AVTYN+++ G   + ++ +     
Sbjct: 173 DVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLM 232

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV      P++ T  ++I  +   G   +  K Y E     V  D+ T N L      
Sbjct: 233 RDMVMRD-IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCM 291

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+ + ++D M  +   P VVTYN +I  F K+  +++  + F++M  RG+  ++IT
Sbjct: 292 HGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTIT 351

Query: 244 YCSLVSAYSKAG-------LIMKVDS-------------------------ILRQVENSD 271
           Y +++  Y +AG       +  ++DS                         +   ++ S+
Sbjct: 352 YNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSE 411

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           + LD   +N +I    + G+VE   +LF ++  +   PD +++ TMI  +      + + 
Sbjct: 412 IELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSD 471

Query: 332 NLENKM 337
            L  KM
Sbjct: 472 LLYRKM 477



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 36/298 (12%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK      A  LF+ M  DG++     Y +LV+    SG   +A   + DM  + D  
Sbjct: 183 GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDM-VMRDIV 241

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V T++ +I    K  +F    K+  EM+   ++    TYN++I+G     + +E +  
Sbjct: 242 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 301

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              MV + GC PD+ T N++I+ +  S  +++  K + E    G+  D  T N + + Y 
Sbjct: 302 LDLMV-TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYF 360

Query: 183 RAGMYDKMRSVMDFMQKRFFFPT--------------------------------VVTYN 210
           +AG  D  + +   M  R    T                                + TYN
Sbjct: 361 QAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYN 420

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           IVI    K G++E   + F+ +  +G+KP+ ++Y +++S + +     K D + R+++
Sbjct: 421 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQ 478



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 5/228 (2%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L+E M    + P V  Y +L++     G +DEA   + D+     C PDV TY+ L
Sbjct: 262 EAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML-DLMVTKGCLPDVVTYNTL 320

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K  R D   K+  EM+  G+    +TYNTII GY +A + +  +  FS M     
Sbjct: 321 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM----D 376

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P+I T + ++     +  +EK    +       ++ DI T NI+     + G  +   
Sbjct: 377 SRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAW 436

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +   +  +   P VV+Y  +I  F +    +K +  ++KM+  G+ P
Sbjct: 437 DLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 116/277 (41%), Gaps = 36/277 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  +S ++    K   +DL+  +   M   GI     +YN +I+   +  +F    S 
Sbjct: 67  PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M++ G   PD+ T++S+I+ +     +                     +++++K   
Sbjct: 127 VGKMMKFGY-EPDVVTVSSLINGFCQGNRV------------------FDAIDLVSK--- 164

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                         M++  F P VV YN +I+   K G +    E F +M+  G++ +++
Sbjct: 165 --------------MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAV 210

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SLV+    +G       ++R +   D++ +   F  +I  + + G   +  +L+  M
Sbjct: 211 TYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEM 270

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             R   PD  T+ ++I      G  + A+ + + M+ 
Sbjct: 271 TRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVT 307


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 153/346 (44%), Gaps = 16/346 (4%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    EQ   L + ML   + P V  Y AL++A+ + G   EA    ++M       P+
Sbjct: 304 GRWSDAEQ---LLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPN 359

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TYS +I    K +R D  E +   M+  G   + +T+NT+IDGY  AK+ ++      
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+G    D  T N++I  +   G++        E    G+  DI T + L       
Sbjct: 420 EMTETG-LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 185 GMYDKMRSVMDFMQK-----------RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           G       +   MQK               P V TYNI+I      G   + EE +++M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           HRG+ P++ITY S++    K   + +   +   + +     +   F  +I+ Y +AG V+
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              ELF  M  R  V + IT+ T+I  +  +G    A ++  +MI+
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 143/309 (46%), Gaps = 9/309 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS- 74
           LF  M     +P+V  +T L++   + G + EA + ++ M      +P   TY  ++   
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMME-DGLQPTQITYGTIVDGM 229

Query: 75  CTK---FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           C K       +L+ K + E+S+  I  + V Y+ IID   K  +  + ++ F+ M E G 
Sbjct: 230 CKKGDTVSALNLLRK-MEEVSH--IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG- 285

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+FT NSMI  + +SG     E+   E     +  D+ T N L  ++ + G + +  
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + D M  R   P  +TY+ +I+ F K   ++  E  F  M  +G  PN IT+ +L+  Y
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
             A  I     +L ++  + ++ DT  +N +I  +   GD+    +L   M      PD 
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDI 465

Query: 312 ITFATMIQA 320
           +T  T++  
Sbjct: 466 VTCDTLLDG 474



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 155/346 (44%), Gaps = 14/346 (4%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ ML  G+ P+   Y++++  + +   LD A      M +   C P++ T++ L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPNLITFNTL 401

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D   ++L EM+  G+     TYNT+I G+               M+ SG 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 132 CHPDIFTLNSMISAYGNSGNIEK-------MEKWYNEFN----LMGVKADIQTLNILTKS 180
           C PDI T ++++    ++G ++        M+K   + +      GV+ D+QT NIL   
Sbjct: 462 C-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T+ +L++ Y KAG +     +  ++    ++ +   +  +I  + + G++    ++F 
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 301 TMKERHCVPDNITFATMIQA-YNALGMTEAAQNLENKMIAMKENSG 345
            M      PD IT   M+   ++   +  A   LE   ++M  + G
Sbjct: 641 EMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMSMDLSFG 686



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   + A  +F +M + G  P++  +  L+  Y  +  +D+    +++M   +   
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE-TGLV 427

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D  TY+ LI         +    +L EM   G+    VT +T++DG     K ++    
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 123 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
           F  M +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T + +     +    D+   + D M  + F P VVT+  +I  + KAG ++   E F +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
             RG+  N+ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDT 651



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 146/330 (44%), Gaps = 9/330 (2%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  E A  LF  ML     PSV  +  L+    +    D   S    M+     + D+Y+
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           ++ILIK      +         +++ LG+    VT+NT++ G     +  E  + F  M 
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+  C P++ T  ++++     G I +     +     G++    T   +     + G  
Sbjct: 177 ETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG-- 233

Query: 188 DKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               S ++ ++K        P VV Y+ +I++  K G     +  F +M+ +G+ P+  T
Sbjct: 234 -DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  +  +G     + +L+++    +  D   +N +I+A+ + G   +  EL+  M 
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML 352

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            R  +P+ IT+++MI  +      +AA+++
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 128/305 (41%), Gaps = 3/305 (0%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           L S + +   L++A    +DM   S   P V  +  L+    +  R DL+  +  +M   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLR-SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
            I C   ++  +I  +    K     S+F  + + G  HPD+ T N+++        + +
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLG-LHPDVVTFNTLLHGLCVEDRVSE 167

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               +++      + ++ T   L     R G   +  +++D M +    PT +TY  +++
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227

Query: 215 TFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
              K G         +KM+    + PN + Y +++ +  K G      ++  +++   + 
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   +N +I  +  +G      +L   M ER   PD +T+  +I A+   G    A+ L
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 334 ENKMI 338
            ++M+
Sbjct: 348 YDEML 352


>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 706

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 2/276 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V  Y++ +K   K    D  EK+  EM   G++   VT++TII         ++    F
Sbjct: 180 EVILYNVTLKVFRKCKDLDGAEKVFGEMLQRGVKPDNVTFSTIISCARSCYLPDKAVEWF 239

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M    GC PD  T + MI +YG +G+I+     Y+       + +  T + L K YG 
Sbjct: 240 EKM-PLFGCEPDDVTYSVMIDSYGKAGDIDMALNLYDRARTEKWRIEPATFSTLIKMYGV 298

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG YD   +V + M+     P +V YN +++  G+A    +    +K+M +  + PN  T
Sbjct: 299 AGNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMINNDILPNRAT 358

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL+ AY +A        + R++   ++ L+T  +N +++     G  +   E+F  MK
Sbjct: 359 YASLLHAYGRARFCEDALVVYREMREKEMDLNTHLYNSLLAMCADVGYTDLAFEIFEDMK 418

Query: 304 ERH-CVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
               C PD+ TF+++I  Y+  G    A+ + N+MI
Sbjct: 419 SSDTCSPDSWTFSSLITIYSCSGRVSEAERMMNEMI 454



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 4/292 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           KPD  T+S +I      +  D   +   +M   G E   VTY+ +ID YGKA   +   +
Sbjct: 213 KPDNVTFSTIISCARSCYLPDKAVEWFEKMPLFGCEPDDVTYSVMIDSYGKAGDIDMALN 272

Query: 122 SFS-AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
            +  A  E     P  F+  ++I  YG +GN +     Y E   +GVK ++   N L  +
Sbjct: 273 LYDRARTEKWRIEPATFS--TLIKMYGVAGNYDGCLNVYEEMKALGVKPNLVVYNTLLDA 330

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
            GRA    + R++   M      P   TY  ++  +G+A   E     +++M+ + M  N
Sbjct: 331 MGRAKRPWQARTIYKEMINNDILPNRATYASLLHAYGRARFCEDALVVYREMREKEMDLN 390

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELF 299
           +  Y SL++  +  G       I   +++SD    D+  F+ +I+ Y  +G V +   + 
Sbjct: 391 THLYNSLLAMCADVGYTDLAFEIFEDMKSSDTCSPDSWTFSSLITIYSCSGRVSEAERMM 450

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
             M E    P      +++Q Y     T+      N+++ M      +   C
Sbjct: 451 NEMIESGFEPTIFVLTSLVQCYGKAKRTDDVVKTFNQLLDMGIEPDDRFCGC 502



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 4/293 (1%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           C  P++A   FE M   G +P    Y+ ++ +YG++G +D A + + D       + +  
Sbjct: 229 CYLPDKAVEWFEKMPLFGCEPDDVTYSVMIDSYGKAGDIDMALN-LYDRARTEKWRIEPA 287

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           T+S LIK       +D    +  EM  LG++ + V YNT++D  G+AK+  +  + +  M
Sbjct: 288 TFSTLIKMYGVAGNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEM 347

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           + +    P+  T  S++ AYG +   E     Y E     +  +    N L       G 
Sbjct: 348 I-NNDILPNRATYASLLHAYGRARFCEDALVVYREMREKEMDLNTHLYNSLLAMCADVGY 406

Query: 187 YDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
            D    + + M+      P   T++ +I  +  +G + + E    +M   G +P      
Sbjct: 407 TDLAFEIFEDMKSSDTCSPDSWTFSSLITIYSCSGRVSEAERMMNEMIESGFEPTIFVLT 466

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           SLV  Y KA     V     Q+ +  +  D  F  C+++   Q    E++G+L
Sbjct: 467 SLVQCYGKAKRTDDVVKTFNQLLDMGIEPDDRFCGCLLNVMTQTPK-EELGKL 518



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 145/344 (42%), Gaps = 8/344 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KCK  + A  +F  ML  G+KP    ++ ++S      L D+A      M  +  C+PD 
Sbjct: 193 KCKDLDGAEKVFGEMLQRGVKPDNVTFSTIISCARSCYLPDKAVEWFEKM-PLFGCEPDD 251

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TYS++I S  K    D+   +              T++T+I  YG A  ++   + +  
Sbjct: 252 VTYSVMIDSYGKAGDIDMALNLYDRARTEKWRIEPATFSTLIKMYGVAGNYDGCLNVYEE 311

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M ++ G  P++   N+++ A G +    +    Y E     +  +  T   L  +YGRA 
Sbjct: 312 M-KALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMINNDILPNRATYASLLHAYGRAR 370

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-KPNSITY 244
             +    V   M+++        YN ++      G+ +   E F+ MK      P+S T+
Sbjct: 371 FCEDALVVYREMREKEMDLNTHLYNSLLAMCADVGYTDLAFEIFEDMKSSDTCSPDSWTF 430

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL++ YS +G + + + ++ ++  S           ++  YG+A   + + + F  + +
Sbjct: 431 SSLITIYSCSGRVSEAERMMNEMIESGFEPTIFVLTSLVQCYGKAKRTDDVVKTFNQLLD 490

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 348
               PD+     ++       MT+  +    K+I   E +  KL
Sbjct: 491 MGIEPDDRFCGCLLNV-----MTQTPKEELGKLIDCVEKANPKL 529



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 96/183 (52%), Gaps = 9/183 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           +G+ K+P QA  +++ M+++ + P+   Y +L+ AYG++   ++A     +M+   +   
Sbjct: 331 MGRAKRPWQARTIYKEMINNDILPNRATYASLLHAYGRARFCEDALVVYREMRE-KEMDL 389

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMES 121
           + + Y+ L+  C      DL  +I  +M      CS  + T++++I  Y  + +  E E 
Sbjct: 390 NTHLYNSLLAMCADVGYTDLAFEIFEDMKS-SDTCSPDSWTFSSLITIYSCSGRVSEAER 448

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ----TLNIL 177
             + M+ES G  P IF L S++  YG +   + + K +N+   MG++ D +     LN++
Sbjct: 449 MMNEMIES-GFEPTIFVLTSLVQCYGKAKRTDDVVKTFNQLLDMGIEPDDRFCGCLLNVM 507

Query: 178 TKS 180
           T++
Sbjct: 508 TQT 510



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 36/221 (16%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK    + A  L++   ++  +     ++ L+  YG +G  D   +   +MK++   KP+
Sbjct: 262 GKAGDIDMALNLYDRARTEKWRIEPATFSTLIKMYGVAGNYDGCLNVYEEMKALG-VKPN 320

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-------KFE 117
           +  Y+ L+ +  +  R      I  EM    I  +  TY +++  YG+A+        + 
Sbjct: 321 LVVYNTLLDAMGRAKRPWQARTIYKEMINNDILPNRATYASLLHAYGRARFCEDALVVYR 380

Query: 118 EMESS----------------------------FSAMVESGGCHPDIFTLNSMISAYGNS 149
           EM                               F  M  S  C PD +T +S+I+ Y  S
Sbjct: 381 EMREKEMDLNTHLYNSLLAMCADVGYTDLAFEIFEDMKSSDTCSPDSWTFSSLITIYSCS 440

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G + + E+  NE    G +  I  L  L + YG+A   D +
Sbjct: 441 GRVSEAERMMNEMIESGFEPTIFVLTSLVQCYGKAKRTDDV 481


>gi|147789723|emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]
          Length = 550

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 148/328 (45%), Gaps = 4/328 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  E+A+ + ++M+  G  P +  Y  LV    + GLL  A   +++M S+S C P
Sbjct: 175 LIKLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEM-SLSGCPP 233

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESS 122
           D  TY+ +++       FD       +    G     +TY  +I+   K     + ME  
Sbjct: 234 DAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVL 293

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
               +E  GC+PDI T NS+++     G  E            G+  +  T N L  S  
Sbjct: 294 EDMAIE--GCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLC 351

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G +D++  ++  M      PTVVTYNI+I    K G +++   +F +M      P+ I
Sbjct: 352 THGYWDEVDEILLIMNMTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDII 411

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L++A  K G++ +   +L  + ++        +N +I    + G +EK   L+  M
Sbjct: 412 TYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMGLYGEM 471

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
            ER   PD+IT  T+      L + E A
Sbjct: 472 IERGFAPDDITHRTLFWGLFRLDLVEDA 499



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 117/257 (45%), Gaps = 2/257 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA   ++  L  G    +  YT L+    +     +A   + DM ++  C PD+ TY+ 
Sbjct: 252 DQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDM-AIEGCYPDIVTYNS 310

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  +++    I+  +   G+  + VTYNT++        ++E++     M  + 
Sbjct: 311 LVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNMTS 370

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P + T N +I+     G +++   ++++        DI T N L  +  + GM D+ 
Sbjct: 371 Q-PPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEA 429

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  +      P ++TYNIVI+   K G +EK    + +M  RG  P+ IT+ +L   
Sbjct: 430 LHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMGLYGEMIERGFAPDDITHRTLFWG 489

Query: 251 YSKAGLIMKVDSILRQV 267
             +  L+     IL+++
Sbjct: 490 LFRLDLVEDALVILKEM 506



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 3/235 (1%)

Query: 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
           +I G  K +  E        MV SGG  PDI T N ++      G ++   +  +E +L 
Sbjct: 171 LIRGLIKLESTERATRVLKIMVMSGGI-PDIITYNMLVGGLCKKGLLKTAIELLDEMSLS 229

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK-AGHIEK 224
           G   D  T N + +     G +D+         ++     ++TY ++IE   K  G ++ 
Sbjct: 230 GCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQA 289

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
           ME   + M   G  P+ +TY SLV+   K G       I+  + +  +  +T  +N ++ 
Sbjct: 290 ME-VLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLH 348

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +    G  +++ E+ L M      P  +T+  +I      G+ + A N  ++M++
Sbjct: 349 SLCTHGYWDEVDEILLIMNMTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVS 403


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 166/345 (48%), Gaps = 12/345 (3%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK    ++A+ + ++M  + + P V  Y  L+    + G +DEAF   ++M+++
Sbjct: 287 ILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENL 346

Query: 59  SDCKPDVYTYSILIKSC----TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
               PDV TY+ LI  C    +    F+LI+K    M   G++ +AVTYN ++  Y K  
Sbjct: 347 K-LLPDVVTYNTLINGCFDCSSSLKGFELIDK----MEGKGVKPNAVTYNVVVKWYVKEG 401

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           K +   +    M ESG   PD  T N++I+ Y  +G + +  +  +E +  G+K +  TL
Sbjct: 402 KMDNAGNELRKMEESG-FSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTL 460

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           N +  +       D    ++    KR +F   V+Y  +I  + K G   +  + + +MK 
Sbjct: 461 NTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKE 520

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           + + P+ ITY +++     +G   +    L ++  S ++ D   +N II  Y + G VEK
Sbjct: 521 KEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEK 580

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             +    M ++   PD  T   +++     GM + A  L N  I+
Sbjct: 581 AFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWIS 625



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 11/320 (3%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ-----SGLLDEA-FSTINDMKSVSD 60
           C +P  A+ +F  M    LKP++     L++A  +     S  L +A FS +  +     
Sbjct: 152 CNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKL----G 207

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            K +  T++ILI  C   ++      ++ +M         V+YNTI+D   K  K  E  
Sbjct: 208 VKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEAR 267

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M ++ G  P+  T N ++S Y   G +++  +  +      V  D+ T N+L   
Sbjct: 268 DLLLDM-KNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGG 326

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             + G  D+   + D M+     P VVTYN +I          K  E   KM+ +G+KPN
Sbjct: 327 LCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPN 386

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           ++TY  +V  Y K G +    + LR++E S    D   FN +I+ Y +AG + +   +  
Sbjct: 387 AVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMD 446

Query: 301 TMKERHCVPDNITFATMIQA 320
            M  +    +++T  T++  
Sbjct: 447 EMSRKGLKMNSVTLNTILHT 466



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 144/324 (44%), Gaps = 4/324 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L + M   G+KP+   Y  +V  Y + G +D A + +  M+  S   PD  T++ LI   
Sbjct: 374 LIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEE-SGFSPDCVTFNTLINGY 432

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R     +++ EMS  G++ ++VT NTI+      +K ++     S+  + G    D
Sbjct: 433 CKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRG-YFVD 491

Query: 136 IFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
             +  ++I  Y   G ++E M+ W +E     +   I T N +      +G  D+    +
Sbjct: 492 EVSYGTLIMGYFKDGKSVEAMKLW-DEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKL 550

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           + + +    P   TYN +I  + + G +EK  ++  KM  +  KP+  T   L+      
Sbjct: 551 NELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTE 610

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G++ K   +     +    +D   +N IIS   +    E+  +L   M+E+   PD  T+
Sbjct: 611 GMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTY 670

Query: 315 ATMIQAYNALGMTEAAQNLENKMI 338
             ++ A    G  + A+   ++++
Sbjct: 671 NAILSALADAGRMKEAEEFMSRIV 694



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 2/291 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G  P    +  L++ Y ++G L EAF  +++M S    K +  T + ++ +     
Sbjct: 413 MEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEM-SRKGLKMNSVTLNTILHTLCGER 471

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           + D   K+L+  S  G     V+Y T+I GY K  K  E    +  M E     P I T 
Sbjct: 472 KLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKE-IIPSIITY 530

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           N+MI    +SG  ++     NE    G+  D  T N +   Y R G  +K     + M K
Sbjct: 531 NTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVK 590

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           + F P + T NI++      G ++K  + F     +G   +++TY +++S   K     +
Sbjct: 591 KSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEE 650

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
              +L ++E   +  D   +N I+SA   AG +++  E    + E+  + D
Sbjct: 651 AFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQD 701



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 132/305 (43%), Gaps = 5/305 (1%)

Query: 36  VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD---LIEKILAEMS 92
           + AY        A    N MK +   KP++ T + LI +  ++       L + I +++ 
Sbjct: 146 IGAYVACNRPHHAAQIFNRMKRLH-LKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVI 204

Query: 93  YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152
            LG++ +  T+N +I G     K  E       M +   C PD  + N+++      G +
Sbjct: 205 KLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKM-KDFSCFPDNVSYNTILDVLCKKGKL 263

Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
            +      +    G+  +  T NIL   Y + G   +   V+D M +    P V TYN++
Sbjct: 264 NEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNML 323

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           I    K G I++      +M++  + P+ +TY +L++        +K   ++ ++E   V
Sbjct: 324 IGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGV 383

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
             +   +N ++  Y + G ++  G     M+E    PD +TF T+I  Y   G    A  
Sbjct: 384 KPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFR 443

Query: 333 LENKM 337
           + ++M
Sbjct: 444 MMDEM 448



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 9/144 (6%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++LG C+  Q E+A      M+    KP +     L+      G+LD+A    N    +S
Sbjct: 568 IILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTW--IS 625

Query: 60  DCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMS--YLGIECSAVTYNTIIDGYGKAKKF 116
             K  D  TY+ +I    K  RF+    +LAEM    LG +C   TYN I+     A + 
Sbjct: 626 KGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDC--YTYNAILSALADAGRM 683

Query: 117 EEMESSFSAMVESGGCHPDIFTLN 140
           +E E   S +VE G       +LN
Sbjct: 684 KEAEEFMSRIVEQGKLQDQTISLN 707



 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 93/211 (44%), Gaps = 13/211 (6%)

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
           L++ I AY          + +N    + +K ++ T N L  +  R   Y    SV  ++ 
Sbjct: 142 LDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVR---YPSKPSV--YLS 196

Query: 199 KRFFFPTVV--------TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           K  F   +         T+NI+I        + +      KMK     P++++Y +++  
Sbjct: 197 KAIFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDV 256

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K G + +   +L  ++N+ ++ +   FN ++S Y + G +++  ++   M + + +PD
Sbjct: 257 LCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPD 316

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMK 341
             T+  +I      G  + A  L+++M  +K
Sbjct: 317 VWTYNMLIGGLCKDGKIDEAFRLKDEMENLK 347


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 4/268 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK      A  L+  M+S G+ P+V  Y+AL+S +   G L +A    N +  + 
Sbjct: 83  VIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKI-ILE 141

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           + KPD YT++IL+    K  +    + + A M   GI    VTYN+++DGY   K+    
Sbjct: 142 NIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTA 201

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +S F+ M + GG +PDI + N +I+ +     ++K    +NE +   +  ++ T N L  
Sbjct: 202 KSIFNTMAQ-GGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLID 260

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              ++G       ++D M  R   P ++TYN +I+   K   ++K      K K +G++P
Sbjct: 261 GLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQP 320

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQV 267
           +  TY  L+    K G +    +I   +
Sbjct: 321 SMYTYTILIDGLCKGGRLKDARNIFEDL 348



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 136/301 (45%), Gaps = 10/301 (3%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR--- 80
           G  P+      L+      G + +AF   +D         D  +Y  LI    K      
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAF-LFHDKLVALGFHLDQVSYGTLIHGLCKVGETRA 60

Query: 81  -FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             DL++++  ++    ++ +AV YNT+I G  K K   +    +S MV S G  P++ T 
Sbjct: 61  ALDLLQRVDGKL----VQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMV-SKGISPNVVTY 115

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           +++IS +   G ++     +N+  L  +K D  T NIL   + +     + ++V   M K
Sbjct: 116 SALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMK 175

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           +   P VVTYN +++ +     +   +  F  M   G+ P+  +Y  L++ + K   + K
Sbjct: 176 QGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDK 235

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
             ++  ++   ++I +   +N +I    ++G +    +L   M +R   P+ +T+ ++I 
Sbjct: 236 AMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIID 295

Query: 320 A 320
           A
Sbjct: 296 A 296



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 97/210 (46%), Gaps = 6/210 (2%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G HP+  TLN++I      G I +   ++++   +G   D  +   L     + G   + 
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVG---ET 58

Query: 191 RSVMDFMQK---RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           R+ +D +Q+   +      V YN VI    K  H+    + + +M  +G+ PN +TY +L
Sbjct: 59  RAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSAL 118

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +S +   G +     +  ++   ++  D   FN ++  + +   +++   +F  M ++  
Sbjct: 119 ISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGI 178

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +PD +T+ +++  Y  +     A+++ N M
Sbjct: 179 IPDVVTYNSLVDGYRLVKEVNTAKSIFNTM 208



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 63/137 (45%)

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
           + P  +T N +I+     G I +   +  K+   G   + ++Y +L+    K G      
Sbjct: 3   YHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAAL 62

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +L++V+   V L+   +N +I    +   V    +L+  M  +   P+ +T++ +I  +
Sbjct: 63  DLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 122

Query: 322 NALGMTEAAQNLENKMI 338
             +G  + A +L NK+I
Sbjct: 123 FVVGKLKDAIDLFNKII 139


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 153/346 (44%), Gaps = 16/346 (4%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    EQ   L + ML   + P V  Y AL++A+ + G   EA    ++M       P+
Sbjct: 304 GRWSDAEQ---LLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPN 359

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TYS +I    K +R D  E +   M+  G   + +T+NT+IDGY  AK+ ++      
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+G    D  T N++I  +   G++        E    G+  DI T + L       
Sbjct: 420 EMTETG-LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 185 GMYDKMRSVMDFMQK-----------RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           G       +   MQK               P V TYNI+I      G   + EE +++M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           HRG+ P++ITY S++    K   + +   +   + +     +   F  +I+ Y +AG V+
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              ELF  M  R  V + IT+ T+I  +  +G    A ++  +MI+
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 142/332 (42%), Gaps = 36/332 (10%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL P V  +T L+        + EA    + M   + C+P+V T++ L+    +  R   
Sbjct: 144 GLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT-CRPNVVTFTTLMNGLCREGRIVE 202

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKA----------KKFEEMESS------FSAMV 127
              +L  M   G++ + +TY TI+DG  K           +K EE+         +SA++
Sbjct: 203 AVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAII 262

Query: 128 ES-------------------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168
           +S                    G  PD+FT NSMI  + +SG     E+   E     + 
Sbjct: 263 DSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKIS 322

Query: 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
            D+ T N L  ++ + G + +   + D M  R   P  +TY+ +I+ F K   ++  E  
Sbjct: 323 PDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F  M  +G  PN IT+ +L+  Y  A  I     +L ++  + ++ DT  +N +I  +  
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYL 442

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            GD+    +L   M      PD +T  T++  
Sbjct: 443 VGDLNAALDLLQEMISSGLCPDIVTCDTLLDG 474



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 155/346 (44%), Gaps = 14/346 (4%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ ML  G+ P+   Y++++  + +   LD A      M +   C P++ T++ L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPNLITFNTL 401

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D   ++L EM+  G+     TYNT+I G+               M+ SG 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 132 CHPDIFTLNSMISAYGNSGNIEK-------MEKWYNEFN----LMGVKADIQTLNILTKS 180
           C PDI T ++++    ++G ++        M+K   + +      GV+ D+QT NIL   
Sbjct: 462 C-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T+ +L++ Y KAG +     +  ++    ++ +   +  +I  + + G++    ++F 
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 301 TMKERHCVPDNITFATMIQA-YNALGMTEAAQNLENKMIAMKENSG 345
            M      PD IT   M+   ++   +  A   LE   ++M  + G
Sbjct: 641 EMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMSMDLSFG 686



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   + A  +F +M + G  P++  +  L+  Y  +  +D+    +++M   +   
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE-TGLV 427

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D  TY+ LI         +    +L EM   G+    VT +T++DG     K ++    
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 123 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
           F  M +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T + +     +    D+   + D M  + F P VVT+  +I  + KAG ++   E F +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
             RG+  N+ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDT 651



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 144/330 (43%), Gaps = 9/330 (2%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  E A  LF  ML     PSV  +  L+    +    D   S    M+     + D+Y+
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           ++ILIK      +         +++ LG+    VT+ T++ G     +  E    F  M 
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMF 176

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+  C P++ T  ++++     G I +     +     G++    T   +     + G  
Sbjct: 177 ETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKG-- 233

Query: 188 DKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               S ++ ++K        P VV Y+ +I++  K G     +  F +M+ +G+ P+  T
Sbjct: 234 -DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  +  +G     + +L+++    +  D   +N +I+A+ + G   +  EL+  M 
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML 352

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            R  +P+ IT+++MI  +      +AA+++
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 129/305 (42%), Gaps = 3/305 (0%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           L S + +   L++A    +DM   S   P V  +  L+    +  R DL+  +  +M   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLR-SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
            I C   ++N +I  +    K     S+F  + + G  HPD+ T  +++        + +
Sbjct: 109 QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLG-LHPDVVTFTTLLHGLCVEDRVSE 167

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
              ++++      + ++ T   L     R G   +  +++D M +    PT +TY  +++
Sbjct: 168 ALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227

Query: 215 TFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
              K G         +KM+    + PN + Y +++ +  K G      ++  +++   + 
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   +N +I  +  +G      +L   M ER   PD +T+  +I A+   G    A+ L
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 334 ENKMI 338
            ++M+
Sbjct: 348 YDEML 352


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 154/322 (47%), Gaps = 2/322 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A +L + M+ +G +P +  Y ++V+   +SG    AF  +  M+   + K DV+TYS +
Sbjct: 176 KAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEE-RNVKADVFTYSTI 234

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I S  +    D    +  EM   GI+ S VTYN+++ G  KA K+ +       MV S  
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV-SRE 293

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P++ T N ++  +   G +++  + Y E    G+  +I T N L   Y       +  
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEAN 353

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           +++D M +    P +VT+  +I+ +     ++   + F+ +  RG+  N++TY  LV  +
Sbjct: 354 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            ++G I   + + +++ +  V+ D   +  ++      G +EK  E+F  +++       
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGI 473

Query: 312 ITFATMIQAYNALGMTEAAQNL 333
           + + T+I+     G  E A NL
Sbjct: 474 VMYTTIIEGMCKGGKVEDAWNL 495



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 142/328 (43%), Gaps = 37/328 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF+ M + G+K SV  Y +LV    ++G  ++    + DM S  +  P+V T+++
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNV 303

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  +     ++  EM   GI  + +TYNT++DGY    +  E  +    MV + 
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 131 GCHPDIFTLNSMISAYG-----------------------------------NSGNIEKM 155
            C PDI T  S+I  Y                                     SG I+  
Sbjct: 364 -CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           E+ + E    GV  D+ T  IL       G  +K   + + +QK      +V Y  +IE 
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K G +E     F  +  +G+KPN +TY  ++S   K G + + + +LR++E      +
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMK 303
              +N +I A+ + GD+    +L   MK
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEMK 570



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 164/366 (44%), Gaps = 37/366 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + + A  LF+ M+     P +  ++   SA  ++   +        ++ ++    ++YT 
Sbjct: 68  KKDDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLE-LNGIAHNIYTL 126

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I+I    +  +      +L ++  LG E    T+NT+I+G     K  +       MVE
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVE 186

Query: 129 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEK------------------------ 157
           +G C PD+ T NS+++    SG+       + KME+                        
Sbjct: 187 NG-CQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 158 ----WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                + E    G+K+ + T N L +   +AG ++    ++  M  R   P V+T+N+++
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
           + F K G +++  E +K+M  RG+ PN ITY +L+  Y     + + +++L  +  +   
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   F  +I  Y     V+   ++F  + +R  V + +T++ ++Q +   G  + A+ L
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 334 ENKMIA 339
             +M++
Sbjct: 426 FQEMVS 431



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 126/279 (45%), Gaps = 1/279 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  +S    +  +  +F+L+     ++   GI  +  T N +I+ + +  K      S
Sbjct: 86  PGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCK-TCFAYS 144

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
               V   G  PD  T N++I+     G + K     +     G + D+ T N +     
Sbjct: 145 VLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGIC 204

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R+G       ++  M++R     V TY+ +I++  + G I+     FK+M+ +G+K + +
Sbjct: 205 RSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVV 264

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SLV    KAG       +L+ + + +++ +   FN ++  + + G +++  EL+  M
Sbjct: 265 TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEM 324

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
             R   P+ IT+ T++  Y        A N+ + M+  K
Sbjct: 325 ITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363


>gi|218194011|gb|EEC76438.1| hypothetical protein OsI_14128 [Oryza sativa Indica Group]
          Length = 669

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +Q+ +L   ML  G+ P    Y  +V A+  +G L        +M +     PD   Y  
Sbjct: 69  DQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMAATGHT-PDPSAYLG 127

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++ T+         +L +M   G   +A TY  ++D YG+  +F+ +   F  M  + 
Sbjct: 128 LMEAHTRVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT- 186

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T N +   +G+ G  +++ + + +     V+ DI T   +  + GR G+++  
Sbjct: 187 -VPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDA 245

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R V+D++      PT   Y  ++E  G A   E+    F  M   G  P   TY +L +A
Sbjct: 246 REVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANA 305

Query: 251 YSKAGLIMKVDSIL-RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           ++K GL  + ++I  R   N+ +  D   F+ +I AY Q   ++   + ++ M++    P
Sbjct: 306 FAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNP 365

Query: 310 DNITFATMIQAYNALGMTEAAQ 331
           D  +   ++ AY   G+ + ++
Sbjct: 366 DERSLEGVLNAYCIAGVIDESK 387



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 122/286 (42%), Gaps = 9/286 (3%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ ML   ++P +D    ++ A G+ GL ++A   + D  +     P    Y+ L+++ 
Sbjct: 213 LFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVL-DYITTEGMVPTAKAYTGLVEAL 271

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                ++        M+ +G   +  TYN + + + K   F+E E+ FS M  +     D
Sbjct: 272 GHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKD 331

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             + +++I AY     ++   K Y E        D ++L  +  +Y  AG+ D+ +   +
Sbjct: 332 KDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFE 391

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-HRGMKPNSITYCSLVSAYSKA 254
            +Q     P+++ Y +++  + +        +  ++MK +R    + +    +   Y   
Sbjct: 392 ELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIKGEYDDD 451

Query: 255 GLIMKVDSIL--RQVENSDVILDTPFFNCIISA---YGQAGDVEKM 295
                V+ +L    +E  D  L   FFN ++     +GQ G   ++
Sbjct: 452 SNWQMVEYVLDNSNLEGCDYSLR--FFNALLDVLWWFGQKGRAARV 495



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 1/159 (0%)

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           V+ D+ T N L  +     + D+   ++  M +    P   +Y  +++ F  AG++ ++ 
Sbjct: 48  VRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVA 107

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
           E F +M   G  P+   Y  L+ A+++ G   +  ++LRQ++          +  ++  Y
Sbjct: 108 ELFAEMAATGHTPDPSAYLGLMEAHTRVGATAEAVAVLRQMQADGCPPTAATYRVLLDLY 167

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           G+ G  + + ELF  M+     PD  T+  + + +   G
Sbjct: 168 GRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVFGDGG 205



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 204 PTVVTYNIVIETFGKAGH----IEKMEEYFKKMKH---RGMKPNSITYCSLVSAYSKAGL 256
           PT  TYN V+    +A       + +   F +M+H     ++P+  TY +L++A +   L
Sbjct: 8   PTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRAL 67

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
             + + +LR +  + V+ DT  +  I+ A+  AG++ ++ ELF  M      PD   +  
Sbjct: 68  SDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMAATGHTPDPSAYLG 127

Query: 317 MIQAYNALGMTEAAQNLENKMIA 339
           +++A+  +G T  A  +  +M A
Sbjct: 128 LMEAHTRVGATAEAVAVLRQMQA 150



 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 7/162 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG     E+A + F +M   G  P+++ Y AL +A+ + GL  EA +  + M + +  + 
Sbjct: 271 LGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQK 330

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  ++  LI++  +  + D   K   EM          +   +++ Y  A   +E +  F
Sbjct: 331 DKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQF 390

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
             + +S    P I     M+S Y  +      ++W + ++L+
Sbjct: 391 EEL-QSMVTVPSIIAYCMMLSLYARN------DRWTDAYDLL 425


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 149/318 (46%), Gaps = 2/318 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L  +M+++G+ P+  ++    SAY + G++D+A    N M+      PD  +Y  LI + 
Sbjct: 365 LLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQ-QGLSPDAVSYGALIDAL 423

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R D  E    +M   G+    V +++++ G     K+E++E  F  M+  G  HP+
Sbjct: 424 CKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVG-IHPN 482

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I   N+++      G + + ++  +    MGV+ D+ + N L   +  AG  D+   +++
Sbjct: 483 IVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLE 542

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M      P   +YN ++  + KAG I+    +F+KM   G+ P  +TY +++    +  
Sbjct: 543 GMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTK 602

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
              +   +   + NS    D   +N I++   ++  V++  ++F  +  +    + ITF 
Sbjct: 603 RFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFN 662

Query: 316 TMIQAYNALGMTEAAQNL 333
            MI A    G  E A +L
Sbjct: 663 IMIGALLKGGRKEDAMDL 680



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 150/323 (46%), Gaps = 7/323 (2%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSDGL---KPSVDVYTALVSAYGQSGLLDEAFSTINDM 55
           +++ G C  K+ E+A  L  +M  D +    P+V  Y+ +++ +   G +D+ ++   +M
Sbjct: 170 ILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEM 229

Query: 56  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
                  PDV TY+ +I    K   FD  E +  +M   G++ +  TYN +I GY    K
Sbjct: 230 MD-RGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGK 288

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           ++E+      M  +GG  P+  T  S+++    +G   +   +++     G+K  + T  
Sbjct: 289 WKEVVRMLEEM-SAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYG 347

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
           I+   Y   G   +M  +++ M      P    +NI    + K G I+K  + F KM+ +
Sbjct: 348 IMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQ 407

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G+ P++++Y +L+ A  K G +   +    Q+ N  V  D   F+ ++         EK+
Sbjct: 408 GLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKV 467

Query: 296 GELFLTMKERHCVPDNITFATMI 318
            ELF  M      P+ + F T++
Sbjct: 468 EELFFEMLNVGIHPNIVFFNTIL 490



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 151/332 (45%), Gaps = 2/332 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q ++   LF  M+  G+ P V  YT ++    ++ L D A +    M   +  KP++ TY
Sbjct: 218 QVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMID-NGVKPNIDTY 276

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + LI       ++  + ++L EMS  G + +  TY ++++   K  +  E    F +M+ 
Sbjct: 277 NCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMI- 335

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             G  P + T   M+  Y   G + +M    N     G+  +    NI   +Y + G+ D
Sbjct: 336 GKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIID 395

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           K   + + M+++   P  V+Y  +I+   K G ++  E  F +M + G+ P+ + + SLV
Sbjct: 396 KAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLV 455

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                     KV+ +  ++ N  +  +  FFN I+    + G V +   L  +++     
Sbjct: 456 YGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVR 515

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           PD I++ T+I  +   G  + A  L   M+++
Sbjct: 516 PDVISYNTLIDGHCLAGTIDEASKLLEGMVSV 547



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 149/340 (43%), Gaps = 4/340 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G CK    ++A  +F+ M+ +G+KP++D Y  L+  Y   G   E    + +M S  
Sbjct: 244 VIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEM-SAG 302

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             KP+  TY  L+    K  R          M   GI+ S  TY  ++ GY       EM
Sbjct: 303 GPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEM 362

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
               + MV + G  P+    N   SAY   G I+K    +N+    G+  D  +   L  
Sbjct: 363 HDLLNLMV-ANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALID 421

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +  + G  D      + M      P +V ++ ++         EK+EE F +M + G+ P
Sbjct: 422 ALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHP 481

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N + + +++    K G +M+   ++  +E   V  D   +N +I  +  AG +++  +L 
Sbjct: 482 NIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLL 541

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             M      PD+ ++ T++  Y   G  ++A +   KM++
Sbjct: 542 EGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLS 581



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 143/315 (45%), Gaps = 2/315 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
            KC   ++A  +F  M   GL P    Y AL+ A  + G +D+A    N M +     PD
Sbjct: 389 AKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMIN-EGVTPD 447

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           +  +S L+       +++ +E++  EM  +GI  + V +NTI+    K  +  E +    
Sbjct: 448 IVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVD 507

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           + +E  G  PD+ + N++I  +  +G I++  K       +G+K D  + N L   Y +A
Sbjct: 508 S-IECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKA 566

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D   S    M      P VVTYN ++    +     + +E +  M + G K +  TY
Sbjct: 567 GRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTY 626

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             +++   K+  + +   + + + +  + L+   FN +I A  + G  E   +LF  +  
Sbjct: 627 NIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPA 686

Query: 305 RHCVPDNITFATMIQ 319
              V + +T+  +++
Sbjct: 687 NGLVQNVVTYRLVVE 701



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 151/331 (45%), Gaps = 4/331 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E     F ++L  G +    V   L++       + EA   +        C PD  +Y+I
Sbjct: 111 EHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNI 170

Query: 71  LIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           L+K  C +    + +E   ++A+        + V+Y+T+I+G+    + ++  + F  M+
Sbjct: 171 LLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMM 230

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           + G   PD+ T  ++I     +   ++ E  + +    GVK +I T N L   Y   G +
Sbjct: 231 DRG-IPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKW 289

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            ++  +++ M      P   TY  ++    K G   +   +F  M  +G+KP+  TY  +
Sbjct: 290 KEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIM 349

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  Y+  G + ++  +L  +  + +  +   FN   SAY + G ++K  ++F  M+++  
Sbjct: 350 LHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGL 409

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            PD +++  +I A   LG  + A+   N+MI
Sbjct: 410 SPDAVSYGALIDALCKLGRVDDAEVKFNQMI 440



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 153/340 (45%), Gaps = 2/340 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+   LF  ML+ G+ P++  +  ++    + G + E    ++ ++ +   +PDV +Y+ 
Sbjct: 465 EKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMG-VRPDVISYNT 523

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI         D   K+L  M  +G++  + +YNT++ GY KA + +   S F  M+ S 
Sbjct: 524 LIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKML-SN 582

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P + T N+++     +    + ++ Y      G K DI T NI+     ++   D+ 
Sbjct: 583 GITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEA 642

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   +  +     ++T+NI+I    K G  E   + F  +   G+  N +TY  +V  
Sbjct: 643 IKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVEN 702

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + G + + DS+   +E +    ++   N ++      GD+ + G     + ER+   +
Sbjct: 703 LIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVE 762

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 350
             T + +I  +++      A++L  K   + E +   LI+
Sbjct: 763 ASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIK 802



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 100/231 (43%), Gaps = 1/231 (0%)

Query: 112  KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
            KA++ ++  S F  M+  G   PD+ T N+++     +G   + ++ Y        + +I
Sbjct: 803  KARRIDDAYSLFREMLMKG-LTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNI 861

Query: 172  QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
             T NI+     ++   D+   +   +  +     ++T+NI+I    K G  E   + F  
Sbjct: 862  YTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAA 921

Query: 232  MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
            +   G+ P+ +TY  +     + G + + D +   +E S   LD+   N ++    Q GD
Sbjct: 922  IPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGD 981

Query: 292  VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
            + + G     + E++   +  T + +I  ++       A++L  K   + E
Sbjct: 982  ISRAGAYLSKLDEKNFSLEASTTSELISLFSRGEYQHHAKSLPEKYRLLNE 1032



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 103/235 (43%), Gaps = 13/235 (5%)

Query: 3    MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA----FSTINDMKSV 58
            ++ K ++ + A  LF  ML  GL P V  Y  ++    Q+G   EA     S IN     
Sbjct: 800  LIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMIN----- 854

Query: 59   SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            S  + ++YTY+I++    K +  D   K+   +   G++ + +T+N +I    K  + E+
Sbjct: 855  SRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKED 914

Query: 119  MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                F+A + + G  PD+ T   +       G++E+ +  +      G   D + LN L 
Sbjct: 915  AMDLFAA-IPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALV 973

Query: 179  KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA---GHIEKMEEYFK 230
            +   + G   +  + +  + ++ F     T + +I  F +     H + + E ++
Sbjct: 974  RRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELISLFSRGEYQHHAKSLPEKYR 1028


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 153/346 (44%), Gaps = 16/346 (4%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    EQ   L + ML   + P V  Y AL++A+ + G   EA    ++M       P+
Sbjct: 304 GRWSDAEQ---LLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP-RGIIPN 359

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TYS +I    K +R D  E +   M+  G   + +T+NT+IDGY  AK+ ++      
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLH 419

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M E+G    D  T N++I  +   G++        E    G+  DI T + L       
Sbjct: 420 EMTETG-LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDN 478

Query: 185 GMYDKMRSVMDFMQK-----------RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           G       +   MQK               P V TYNI+I      G   + EE +++M 
Sbjct: 479 GKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 538

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           HRG+ P++ITY S++    K   + +   +   + +     +   F  +I+ Y +AG V+
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              ELF  M  R  V + IT+ T+I  +  +G    A ++  +MI+
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMIS 644



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 142/309 (45%), Gaps = 9/309 (2%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M     +P+V  +T L++   + G + EA + ++ M      +P   TY  ++   
Sbjct: 171 LFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMME-DGLQPTQITYGTIVDGM 229

Query: 76  TKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
            K        DL+ K + E+S+  I  + V Y+ IID   K  +  + ++ F+ M E G 
Sbjct: 230 CKIGDTVSALDLLRK-MEEISH--IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG- 285

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+FT NSMI  + +SG     E+   E     +  D+ T N L  ++ + G + +  
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + D M  R   P  +TY+ +I+ F K   ++  E  F  M  +G  PN IT+ +L+  Y
Sbjct: 346 ELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY 405

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
             A  I     +L ++  + ++ DT  +N +I  +   GD+    +L   M      PD 
Sbjct: 406 CGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDI 465

Query: 312 ITFATMIQA 320
           +T  T++  
Sbjct: 466 VTCDTLLDG 474



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 155/346 (44%), Gaps = 14/346 (4%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L++ ML  G+ P+   Y++++  + +   LD A      M +   C P++ T++ L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLM-ATKGCSPNLITFNTL 401

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       R D   ++L EM+  G+     TYNT+I G+               M+ SG 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 132 CHPDIFTLNSMISAYGNSGNIEK-------MEKWYNEFN----LMGVKADIQTLNILTKS 180
           C PDI T ++++    ++G ++        M+K   + +      GV+ D+QT NIL   
Sbjct: 462 C-PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISG 520

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               G + +   + + M  R   P  +TY+ +I+   K   +++  + F  M  +   PN
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPN 580

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T+ +L++ Y KAG +     +  ++    ++ +   +  +I  + + G++    ++F 
Sbjct: 581 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQ 640

Query: 301 TMKERHCVPDNITFATMIQA-YNALGMTEAAQNLENKMIAMKENSG 345
            M      PD IT   M+   ++   +  A   LE   ++M  + G
Sbjct: 641 EMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMSMDLSFG 686



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 13/284 (4%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CKQ   + A  +F +M + G  P++  +  L+  Y  +  +D+    +++M   +   
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTE-TGLV 427

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D  TY+ LI         +    +L EM   G+    VT +T++DG     K ++    
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 123 FSAMVES----------GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
           F  M +S           G  PD+ T N +IS   N G   + E+ Y E    G+  D  
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T + +     +    D+   + D M  + F P VVT+  +I  + KAG ++   E F +M
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
             RG+  N+ITY +L+  + K G I     I +++ +S V  DT
Sbjct: 608 GRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDT 651



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 146/330 (44%), Gaps = 9/330 (2%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  E A  LF  ML     PSV  +  L+    +    D   S    M+     + D+Y+
Sbjct: 58  KGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMER-KQIRCDIYS 116

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           ++ILIK      +         +++ LG+    VT+NT++ G     +  E  + F  M 
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E+  C P++ T  ++++     G I +     +     G++    T   +     + G  
Sbjct: 177 ETT-CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIG-- 233

Query: 188 DKMRSVMDFMQK----RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               S +D ++K        P VV Y+ +I++  K G     +  F +M+ +G+ P+  T
Sbjct: 234 -DTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFT 292

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y S++  +  +G     + +L+++    +  D   +N +I+A+ + G   +  EL+  M 
Sbjct: 293 YNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEML 352

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            R  +P+ IT+++MI  +      +AA+++
Sbjct: 353 PRGIIPNTITYSSMIDGFCKQNRLDAAEHM 382



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 129/305 (42%), Gaps = 3/305 (0%)

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           L S + +   L++A    +DM   S   P V  +  L+    +  R DL+  +  +M   
Sbjct: 50  LQSGFHEIKGLEDAIDLFSDMLR-SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
            I C   ++  +I  +    K     S+F  + + G  HPD+ T N+++        + +
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLG-LHPDVVTFNTLLHGLCVEDRVSE 167

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
               +++      + ++ T   L     R G   +  +++D M +    PT +TY  +++
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVD 227

Query: 215 TFGKAGHIEKMEEYFKKMKH-RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
              K G      +  +KM+    + PN + Y +++ +  K G      ++  +++   + 
Sbjct: 228 GMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   +N +I  +  +G      +L   M ER   PD +T+  +I A+   G    A+ L
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347

Query: 334 ENKMI 338
            ++M+
Sbjct: 348 YDEML 352


>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
          Length = 701

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 138/276 (50%), Gaps = 2/276 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V  Y++ +K   K    D  EK+  EM   G++   +T++TII     +    +    F
Sbjct: 175 EVILYNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWF 234

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E G CHPD  T ++MI AYG +GN++   K Y+       + D  T + L + YG 
Sbjct: 235 EKMPEFG-CHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGM 293

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +G +D   +V + M+     P +V YN +++  G+A    + +  +K+M + G++ +  T
Sbjct: 294 SGNFDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGT 353

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+ AY +A        + ++++   + L    +N +++     G  E+   +F  MK
Sbjct: 354 YAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMK 413

Query: 304 ER-HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              +C+PD+ TF+++I  Y+  G    A+ + N M+
Sbjct: 414 SSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAML 449



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 155/344 (45%), Gaps = 8/344 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC+  + A  LF+ ML  G+KP    ++ ++S    S L ++A      M     C PD 
Sbjct: 188 KCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFG-CHPDD 246

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            TYS +I +  +    D+  K+             VT++T+I  YG +  F+   + +  
Sbjct: 247 VTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEE 306

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M ++ G  P++   N+++ A G +    + +  Y E    G++    T   L ++YGRA 
Sbjct: 307 M-KALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRAR 365

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITY 244
             +    V   M+++    +VV YN ++      G+ E+    F+ MK  G   P+S T+
Sbjct: 366 YAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTF 425

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL++ YS +G + + +++L  +  +    +      +I  YG+A   +++   F  + E
Sbjct: 426 SSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLE 485

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 348
               PD+     M+       MT++ +    K+I   + +  KL
Sbjct: 486 LDITPDDRFCGCMLNV-----MTQSPKEELGKLIDCIDKANPKL 524



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 94/183 (51%), Gaps = 9/183 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           +G+ K+P QA  +++ M ++GL+ S   Y AL+ AYG++   ++A     +MK     + 
Sbjct: 326 MGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAEDALIVYKEMKE-KGLEL 384

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMES 121
            V  Y+ L+  C      +    I  +M   G  C   + T++++I  Y  + K  E E+
Sbjct: 385 SVVLYNTLLAMCADVGYTEEAAAIFEDMKSSG-NCMPDSWTFSSLITIYSCSGKVSEAEA 443

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ----TLNIL 177
             +AM+E+ G  P+IF L S+I  YG +   +++ + ++    + +  D +     LN++
Sbjct: 444 MLNAMLEA-GFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPDDRFCGCMLNVM 502

Query: 178 TKS 180
           T+S
Sbjct: 503 TQS 505



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 94/228 (41%), Gaps = 36/228 (15%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    + A  L++   ++  +     ++ L+  YG SG  D   +   +MK++   KP+
Sbjct: 257 GRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALG-VKPN 315

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF-------- 116
           +  Y+ L+ +  +  R    + I  EM+  G++ S  TY  ++  YG+A+          
Sbjct: 316 LVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAEDALIVYK 375

Query: 117 ---------------------------EEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
                                      EE  + F  M  SG C PD +T +S+I+ Y  S
Sbjct: 376 EMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCS 435

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           G + + E   N     G + +I  L  L + YG+A   D++    D +
Sbjct: 436 GKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRL 483



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 78/147 (53%), Gaps = 3/147 (2%)

Query: 196 FMQKRFFFPT--VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           F +KR   P+  V+ YN+ ++ F K  +++  E+ F +M  RG+KP++IT+ +++S    
Sbjct: 165 FFRKRLK-PSREVILYNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARV 223

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
           + L  K      ++       D   ++ +I AYG+AG+V+   +L+   +      D +T
Sbjct: 224 SSLPNKAVEWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVT 283

Query: 314 FATMIQAYNALGMTEAAQNLENKMIAM 340
           F+T+I+ Y   G  +   N+  +M A+
Sbjct: 284 FSTLIRIYGMSGNFDGCLNVYEEMKAL 310


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 145/325 (44%), Gaps = 5/325 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           QP  AS     M+  G +P +  +T+L++ +     ++EA S +N M  +   KPDV  Y
Sbjct: 122 QPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG-IKPDVVMY 180

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I S  K    +    +  +M   GI    V Y ++++G   + ++ + +S    M +
Sbjct: 181 TTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK 240

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                PD+ T N++I A+   G     E+ YNE   M +  +I T   L   +   G  D
Sbjct: 241 RK-IKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVD 299

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           + R +   M+ +  FP VV Y  +I  F K   ++   + F +M  +G+  N+ITY +L+
Sbjct: 300 EARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLI 359

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-- 306
             + + G       +   + +  V  +   +N ++      G V+K   +F  M++R   
Sbjct: 360 QGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMD 419

Query: 307 -CVPDNITFATMIQAYNALGMTEAA 330
              P+  T+  ++      G  E A
Sbjct: 420 GVAPNIWTYNVLLHGLCYNGKLEKA 444



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 150/325 (46%), Gaps = 5/325 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M + G++P V +YT+LV+    SG   +A S +  M      KPDV T++ LI + 
Sbjct: 199 LFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK-RKIKPDVITFNALIDAF 257

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +F   E++  EM  + I  +  TY ++I+G+      +E    F  M E+ GC PD
Sbjct: 258 VKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLM-ETKGCFPD 316

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +    S+I+ +     ++   K + E +  G+  +  T   L + +G+ G  +  + V  
Sbjct: 317 VVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFS 376

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR---GMKPNSITYCSLVSAYS 252
            M  R   P + TYN+++      G ++K    F+ M+ R   G+ PN  TY  L+    
Sbjct: 377 HMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLC 436

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
             G + K   +   +   ++ +    +  II    +AG V+    LF ++  +   P+ +
Sbjct: 437 YNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVV 496

Query: 313 TFATMIQAYNALGMTEAAQNLENKM 337
           T+ TMI      G+   A  L  KM
Sbjct: 497 TYTTMISGLFREGLKHEAHVLFRKM 521



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 152/331 (45%), Gaps = 2/331 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q  +A  LF  M+     PS+  +T L++   +    D   +  + ++ +     D+YT 
Sbjct: 52  QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQ-IMGVSHDLYTC 110

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           ++L+    +  +  L    L +M  LG E   VT+ ++I+G+    + EE  S  + MVE
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G   PD+    ++I +   +G++      +++    G++ D+     L      +G + 
Sbjct: 171 MG-IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWR 229

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
              S++  M KR   P V+T+N +I+ F K G     EE + +M    + PN  TY SL+
Sbjct: 230 DADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLI 289

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           + +   G + +   +   +E      D   +  +I+ + +   V+   ++F  M ++   
Sbjct: 290 NGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLT 349

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            + IT+ T+IQ +  +G    AQ + + M++
Sbjct: 350 GNTITYTTLIQGFGQVGKPNVAQEVFSHMVS 380



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 131/263 (49%), Gaps = 5/263 (1%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  L+  M+   + P++  YT+L++ +   G +DEA      M++   C PDV  Y+ LI
Sbjct: 266 AEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET-KGCFPDVVAYTSLI 324

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K  + D   KI  EMS  G+  + +TY T+I G+G+  K    +  FS MV S G 
Sbjct: 325 NGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMV-SRGV 383

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFN---LMGVKADIQTLNILTKSYGRAGMYDK 189
            P+I T N ++     +G ++K    + +     + GV  +I T N+L       G  +K
Sbjct: 384 PPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEK 443

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              V + M+KR     ++TY I+I+   KAG ++     F  +  +G+KPN +TY +++S
Sbjct: 444 ALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMIS 503

Query: 250 AYSKAGLIMKVDSILRQVENSDV 272
              + GL  +   + R+++   V
Sbjct: 504 GLFREGLKHEAHVLFRKMKEDGV 526



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 1/238 (0%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           Y  I+     + +F E    F+ MVES    P I     +++        + +    +  
Sbjct: 40  YREILRNGLHSLQFNEALDLFTHMVESRPL-PSIIDFTKLLNVIAKMKKFDVVINLCDHL 98

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
            +MGV  D+ T N+L   + ++       S +  M K  F P +VT+  +I  F     +
Sbjct: 99  QIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRM 158

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           E+      +M   G+KP+ + Y +++ +  K G +    S+  Q+EN  +  D   +  +
Sbjct: 159 EEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSL 218

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           ++    +G       L   M +R   PD ITF  +I A+   G    A+ L N+MI M
Sbjct: 219 VNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRM 276



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 3/149 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDC 61
            G+  +P  A  +F  M+S G+ P++  Y  L+     +G + +A     DM  + +   
Sbjct: 362 FGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGV 421

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            P+++TY++L+       + +    +  +M    ++   +TY  II G  KA K +   +
Sbjct: 422 APNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVN 481

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSG 150
            F ++  S G  P++ T  +MIS     G
Sbjct: 482 LFCSL-PSKGVKPNVVTYTTMISGLFREG 509


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 153/322 (47%), Gaps = 2/322 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A +L + M+ +G +P V  Y ++V+   +SG    A   +  M+   + K DV+TYS +
Sbjct: 176 EAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEE-RNVKADVFTYSTI 234

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I S  +    D    +  EM   GI+ S VTYN+++ G  KA K+ +       MV S  
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV-SRE 293

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P++ T N ++  +   G +++  + Y E    G+  +I T N L   Y       +  
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEAN 353

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           +++D M +    P +VT+  +I+ +     ++   + F+ +  RG+  N++TY  LV  +
Sbjct: 354 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            ++G I   + + +++ +  V+ D   +  ++      G +EK  E+F  +++       
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGI 473

Query: 312 ITFATMIQAYNALGMTEAAQNL 333
           + + T+I+     G  E A NL
Sbjct: 474 VMYTTIIEGMCKGGKVEDAWNL 495



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 142/328 (43%), Gaps = 37/328 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF+ M + G+K SV  Y +LV    ++G  ++    + DM S  +  P+V T+++
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNV 303

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  +     ++  EM   GI  + +TYNT++DGY    +  E  +    MV + 
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 131 GCHPDIFTLNSMISAYG-----------------------------------NSGNIEKM 155
            C PDI T  S+I  Y                                     SG I+  
Sbjct: 364 -CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422

Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
           E+ + E    GV  D+ T  IL       G  +K   + + +QK      +V Y  +IE 
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K G +E     F  +  +G+KPN +TY  ++S   K G + + + +LR++E      +
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMK 303
              +N +I A+ + GD+    +L   MK
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEMK 570



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 164/366 (44%), Gaps = 37/366 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + + A  LF+ M+     PS+  ++   SA  ++   +        ++ ++    ++YT 
Sbjct: 68  KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLE-LNGIAHNIYTL 126

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I+I    +  +      +L ++  LG E    T+NT+I G     K  E       MVE
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 186

Query: 129 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEK------------------------ 157
           +G C PD+ T NS+++    SG+       + KME+                        
Sbjct: 187 NG-CQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 158 ----WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                + E    G+K+ + T N L +   +AG ++    ++  M  R   P V+T+N+++
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
           + F K G +++  E +K+M  RG+ PN ITY +L+  Y     + + +++L  +  +   
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   F  +I  Y     V+   ++F  + +R  V + +T++ ++Q +   G  + A+ L
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 334 ENKMIA 339
             +M++
Sbjct: 426 FQEMVS 431


>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
           [Vitis vinifera]
 gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
          Length = 548

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 154/324 (47%), Gaps = 10/324 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDV----YTALVSAYGQSGLLDEAFSTINDMKSVS 59
           L + KQ ++ SL+ E++     +P  D     +  LV+AYG+ G  ++A     DM    
Sbjct: 111 LVRFKQLKKWSLVSEILEWLQTQPWWDFSEMDFLMLVTAYGKQGDFNKAERVFGDMHK-K 169

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P V +++ L+++  K  +++  E +   M   G E SA+TY  I+  + +  KF+E 
Sbjct: 170 GYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSALTYQLILKIFVEGNKFKEA 229

Query: 120 ESSFSAMV--ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E +F  ++  E     PD    + MI  Y  +GN EK  K +      GV     T N L
Sbjct: 230 EETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLMRERGVPQSTVTYNSL 289

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                    Y ++    D MQ+    P VV+Y ++I  +GKA   E+    F++M   G+
Sbjct: 290 MSFETN---YKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGV 346

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +P    Y  L+ A++ +G++ +  ++ + +       D   +  ++SAY  A D+E   +
Sbjct: 347 RPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEK 406

Query: 298 LFLTMKERHCVPDNITFATMIQAY 321
            F  +K+    P+ +T+ T+I+ Y
Sbjct: 407 FFRRLKQDGFEPNVVTYGTLIKGY 430



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 143/294 (48%), Gaps = 8/294 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKS 57
           M   GK KQ  +A  +F  MLS G +PS   Y  ++  + +     EA   F T+ D + 
Sbjct: 182 MEAYGKGKQYNKAESVFRRMLSSGPEPSALTYQLILKIFVEGNKFKEAEETFETLLDDEK 241

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            S  KPD   + ++I    K   ++   KI   M   G+  S VTYN+++        ++
Sbjct: 242 -SPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLMRERGVPQSTVTYNSLMSF---ETNYK 297

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E+  ++  M +  G  PD+ +   +I+AYG +   E+    + E    GV+   +  NIL
Sbjct: 298 EVSKTYDQM-QRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNIL 356

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             ++  +GM D+ R+V   M++    P + +Y  ++  +  A  +E  E++F+++K  G 
Sbjct: 357 LDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF 416

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           +PN +TY +L+  Y+K   + K+     +++   +  +   +  ++ AYG+  D
Sbjct: 417 EPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMDAYGKNKD 470



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 4/174 (2%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++ E+A  +FE ML  G++P+   Y  L+ A+  SG++D+A +    M+    C PD
Sbjct: 326 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRR-DRCTPD 384

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + +Y+ ++ +       +  EK    +   G E + VTY T+I GY K    E+M   + 
Sbjct: 385 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYE 444

Query: 125 AMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
            M   G   +  I+T  +M+ AYG + +      W+ E    GV  D +  NIL
Sbjct: 445 EMQVHGIKANQAIYT--AMMDAYGKNKDFGSAVFWFKEMGFCGVPPDRKATNIL 496



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 5/247 (2%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M  K    E+A  +F +M   G+  S   Y +L+S         E   T + M+     +
Sbjct: 257 MYRKAGNYEKARKIFGLMRERGVPQSTVTYNSLMSFETN---YKEVSKTYDQMQRAG-LR 312

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV +Y++LI +  K  R +    +  EM   G+  +   YN ++D +  +   ++  + 
Sbjct: 313 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 372

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F +M     C PDI +  +M+SAY N+ ++E  EK++      G + ++ T   L K Y 
Sbjct: 373 FKSM-RRDRCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYA 431

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    +KM    + MQ          Y  +++ +GK         +FK+M   G+ P+  
Sbjct: 432 KISNLEKMMEKYEEMQVHGIKANQAIYTAMMDAYGKNKDFGSAVFWFKEMGFCGVPPDRK 491

Query: 243 TYCSLVS 249
               L+S
Sbjct: 492 ATNILLS 498


>gi|413917168|gb|AFW57100.1| hypothetical protein ZEAMMB73_992270 [Zea mays]
          Length = 442

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 147/293 (50%), Gaps = 10/293 (3%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y+ +V  Y ++  L +A S + +M+   +  PD Y +  ++++   + +  L+EK LA+ 
Sbjct: 127 YSVIVRMYIKARRLKDACSVLAEMEKQKEIIPDKYLFLDMLRT---YQKCGLLEK-LADT 182

Query: 92  SYL----GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
            Y      ++C    YN II+  G+A   +E+   F  M++ G    +  T N ++  YG
Sbjct: 183 YYWIRKSQVKCDEAMYNCIINCCGRAIPVDELSRIFDEMLQQGHL-ANTVTFNVLLDIYG 241

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
            +G   + EK +      G+ ADI + N +  +Y + G +  M   +  MQ   F  ++ 
Sbjct: 242 KAGLFNRAEKVFIMARKQGL-ADIISYNTIIAAYAKGGNFLSMNYFVQMMQDAGFPVSLE 300

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            YN +++ +GKAG +E+     +KMK    K +  TY  +++ Y + G I  V ++L ++
Sbjct: 301 AYNCMLDAYGKAGRLEEFASVLQKMKRAKCKFDHYTYNIMINIYGRRGWIQDVSNVLAEL 360

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           ++  V  D   +N +I AYG A   E   +L   M+ +   PD +T+A +I A
Sbjct: 361 KDRGVEPDLYSYNTLIKAYGIARMPEDAVKLMQEMRVKGISPDRVTYANLIAA 413



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 147/342 (42%), Gaps = 35/342 (10%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           ++Y  L+ +  + G  ++A    N M   S+  P+      +I   +   RF   E IL 
Sbjct: 55  NLYHILICSCKEGGNYNDAVRIYNQMPK-SETHPNPRISCTMIDVFSTMERFADAETILL 113

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
           E+         + Y+ I+  Y KA++ ++  S  + M +     PD +    M+  Y   
Sbjct: 114 ELKASASVLDMIAYSVIVRMYIKARRLKDACSVLAEMEKQKEIIPDKYLFLDMLRTYQKC 173

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
           G +EK+   Y       VK D    N +    GRA   D++  + D M ++      VT+
Sbjct: 174 GLLEKLADTYYWIRKSQVKCDEAMYNCIINCCGRAIPVDELSRIFDEMLQQGHLANTVTF 233

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMK------------------------------- 238
           N++++ +GKAG   + E+ F   + +G+                                
Sbjct: 234 NVLLDIYGKAGLFNRAEKVFIMARKQGLADIISYNTIIAAYAKGGNFLSMNYFVQMMQDA 293

Query: 239 --PNSI-TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
             P S+  Y  ++ AY KAG + +  S+L++++ +    D   +N +I+ YG+ G ++ +
Sbjct: 294 GFPVSLEAYNCMLDAYGKAGRLEEFASVLQKMKRAKCKFDHYTYNIMINIYGRRGWIQDV 353

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   +K+R   PD  ++ T+I+AY    M E A  L  +M
Sbjct: 354 SNVLAELKDRGVEPDLYSYNTLIKAYGIARMPEDAVKLMQEM 395



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 119/276 (43%), Gaps = 34/276 (12%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +  S+L E+     + P   ++  ++  Y + GLL++   T   ++  S  K D   Y+ 
Sbjct: 142 DACSVLAEMEKQKEIIPDKYLFLDMLRTYQKCGLLEKLADTYYWIRK-SQVKCDEAMYNC 200

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME---------- 120
           +I  C +    D + +I  EM   G   + VT+N ++D YGKA  F   E          
Sbjct: 201 IINCCGRAIPVDELSRIFDEMLQQGHLANTVTFNVLLDIYGKAGLFNRAEKVFIMARKQG 260

Query: 121 -----------------------SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 157
                                  + F  M++  G    +   N M+ AYG +G +E+   
Sbjct: 261 LADIISYNTIIAAYAKGGNFLSMNYFVQMMQDAGFPVSLEAYNCMLDAYGKAGRLEEFAS 320

Query: 158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
              +      K D  T NI+   YGR G    + +V+  ++ R   P + +YN +I+ +G
Sbjct: 321 VLQKMKRAKCKFDHYTYNIMINIYGRRGWIQDVSNVLAELKDRGVEPDLYSYNTLIKAYG 380

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
            A   E   +  ++M+ +G+ P+ +TY +L++A  +
Sbjct: 381 IARMPEDAVKLMQEMRVKGISPDRVTYANLIAALQR 416



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 3/233 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++ S +F+ ML  G   +   +  L+  YG++GL + A      + +      D
Sbjct: 206 GRAIPVDELSRIFDEMLQQGHLANTVTFNVLLDIYGKAGLFNRAEKVF--IMARKQGLAD 263

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + +Y+ +I +  K   F  +   +  M   G   S   YN ++D YGKA + EE  S   
Sbjct: 264 IISYNTIIAAYAKGGNFLSMNYFVQMMQDAGFPVSLEAYNCMLDAYGKAGRLEEFASVLQ 323

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +   C  D +T N MI+ YG  G I+ +     E    GV+ D+ + N L K+YG A
Sbjct: 324 KM-KRAKCKFDHYTYNIMINIYGRRGWIQDVSNVLAELKDRGVEPDLYSYNTLIKAYGIA 382

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            M +    +M  M+ +   P  VTY  +I    +  +  +  ++   MK  G+
Sbjct: 383 RMPEDAVKLMQEMRVKGISPDRVTYANLIAALQRNENFLEAVKWSLWMKQTGV 435


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 3/324 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + E M  +G KP+V  Y +L++   + G + EA   + DM       P+   Y++LI   
Sbjct: 369 ILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVG-RGVLPNANIYNMLIDGS 427

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               +     +   EMS  GI  + VTYN++I G  K  K +E E  F  +  +G C PD
Sbjct: 428 CTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHC-PD 486

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T NS+IS Y N+GN +K  + Y     +G+K  I T + L     + G+  K  ++ +
Sbjct: 487 VITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLK-ETLFN 545

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M +    P  V YN +I  + + GH++K     K+M   G++P++ TY SL+  + K G
Sbjct: 546 EMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEG 605

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   ++  ++   +I +   ++ +I  +    D       +  M E   +P+     
Sbjct: 606 KLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICN 665

Query: 316 TMIQAYNALGMTEAAQNLENKMIA 339
            +       G  + AQ++ ++MIA
Sbjct: 666 ELSTGLRKDGRLQEAQSICSEMIA 689



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 146/311 (46%), Gaps = 3/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A    + M+  G+ PSV+ Y  L+  YG+  +    F  + +M+   + KP+V +Y  
Sbjct: 329 DKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGE-KPNVISYGS 387

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  +    E +L +M   G+  +A  YN +IDG     K  E    F  M ++G
Sbjct: 388 LINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNG 447

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
                I T NS+I      G +++ E+ +      G   D+ T N L   Y  AG   K 
Sbjct: 448 -IGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKC 506

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + + M+K    PT+ T++ +I    K G I+  E  F +M    + P+ + Y +++  
Sbjct: 507 LELYETMKKLGLKPTINTFHPLISGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHC 565

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y + G + K  S+ +++ +  V  D   +N +I  + + G + +  +L   MK +  +P+
Sbjct: 566 YQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPE 625

Query: 311 NITFATMIQAY 321
             T++ +IQ +
Sbjct: 626 ADTYSLLIQGH 636



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 160/371 (43%), Gaps = 40/371 (10%)

Query: 5   GKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS---VS 59
           G CK  E   A  L E M  + ++PS+  + +L+S   ++  ++EA   +N++K    V 
Sbjct: 145 GYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVP 204

Query: 60  D--------------------------------CKPDVYTYSILIKSCTKFHRFDLIEKI 87
           D                                 K D YT SIL+    K  + +  E++
Sbjct: 205 DGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEV 264

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
           L  +   G+    V YNTI++GY +    +    +   M ES G  P+    NS+I  + 
Sbjct: 265 LKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQM-ESRGLRPNCIAFNSVIDKFC 323

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
               I+K E+W  +    G+   ++T NIL   YGR  ++ +   +++ M++    P V+
Sbjct: 324 EMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVI 383

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           +Y  +I    K G I + E   + M  RG+ PN+  Y  L+      G + +      ++
Sbjct: 384 SYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEM 443

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGEL-FLTMKERHCVPDNITFATMIQAYNALGM 326
             + +      +N +I    + G +++  E+ FL     HC PD IT+ ++I  Y+  G 
Sbjct: 444 SKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHC-PDVITYNSLISGYSNAGN 502

Query: 327 TEAAQNLENKM 337
           ++    L   M
Sbjct: 503 SQKCLELYETM 513



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 154/363 (42%), Gaps = 44/363 (12%)

Query: 16  LFEVMLSDGLKPSVDVY-TALVSA--YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           LF+ M+  G +P   VY  A+++A   G   L  E F T+   K V    P+V+ Y++LI
Sbjct: 53  LFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVV----PNVFVYNVLI 108

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K  R    EK+  EMS   +  + VT+NT+IDGY KA +  ++       ++    
Sbjct: 109 GGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEV-DVAIGLRERMKKEKV 167

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL---------------------------- 164
            P I T NS++S    +  IE+     NE                               
Sbjct: 168 EPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAAL 227

Query: 165 --------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
                    GVK D  T +IL     + G  +K   V+  + +    P  V YN ++  +
Sbjct: 228 DLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGY 287

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            + G +++     ++M+ RG++PN I + S++  + +  +I K +  ++++    +    
Sbjct: 288 CQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSV 347

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             +N +I  YG+     +  ++   M+E    P+ I++ ++I      G    A+ +   
Sbjct: 348 ETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRD 407

Query: 337 MIA 339
           M+ 
Sbjct: 408 MVG 410



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 122/313 (38%), Gaps = 37/313 (11%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P      ++++S  +  +FD +  +  EM  LG     + Y   +    K    +     
Sbjct: 29  PSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMEL 88

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +     P++F  N +I        I   EK + E ++  +  +  T N L   Y 
Sbjct: 89  FETM-KRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYC 147

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG  D    + + M+K    P+++T+N ++    KA  IE+      ++K  G  P+  
Sbjct: 148 KAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGF 207

Query: 243 TY-----------------------------------CS-LVSAYSKAGLIMKVDSILRQ 266
           TY                                   CS L++   K G + K + +L+ 
Sbjct: 208 TYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKS 267

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +    ++     +N I++ Y Q GD+++       M+ R   P+ I F ++I  +  + M
Sbjct: 268 LVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQM 327

Query: 327 TEAAQNLENKMIA 339
            + A+    KM+ 
Sbjct: 328 IDKAEEWVKKMVG 340



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 6/234 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           +GK K+ E+   +F ++ S G  P V  Y +L+S Y  +G   +       MK +   KP
Sbjct: 465 MGKLKEAEE---MFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLG-LKP 520

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            + T+  LI  C+K     L E +  EM  + +    V YN +I  Y +    ++  S  
Sbjct: 521 TINTFHPLISGCSK-EGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQ 579

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV+  G  PD  T NS+I  +   G + + +   ++    G+  +  T ++L + +  
Sbjct: 580 KEMVDM-GVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCD 638

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              ++        M +  F P V   N +     K G +++ +    +M   GM
Sbjct: 639 LKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANGM 692



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/152 (21%), Positives = 71/152 (46%)

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
           M+ ++  + DFM++    P+     +++E+  ++   + + + FK+M   G +P+ + Y 
Sbjct: 11  MHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYG 70

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
             + A  K G +     +   ++   V+ +   +N +I    +   +    +LF  M  R
Sbjct: 71  RAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVR 130

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + VP+ +TF T+I  Y   G  + A  L  +M
Sbjct: 131 NLVPNRVTFNTLIDGYCKAGEVDVAIGLRERM 162


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 141/306 (46%), Gaps = 2/306 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L+  M+  G +P V  Y  L++    SG  + A      M+  + CKP+V TY+ +I S 
Sbjct: 185 LYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQ-NGCKPNVVTYNTIIDSL 243

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K    +     L+EM   GI   A+TYN+I+ G     +  E    F  M E  GC PD
Sbjct: 244 CKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRM-EQNGCKPD 302

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T N +I +      +     + +E    G+  D+ T   +       G  ++   +  
Sbjct: 303 VVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFK 362

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+++   P VV YN +I++  K   +    E+  +M  RG+ PN++TY +++  +   G
Sbjct: 363 KMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLG 422

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   + +++   +V+ +T  F+ ++    Q G V +   +F TM E+   P+  T+ 
Sbjct: 423 QLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYN 482

Query: 316 TMIQAY 321
            ++  Y
Sbjct: 483 ALMNGY 488



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 140/312 (44%), Gaps = 2/312 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G++P V  +T L++     G +  A    N+M   S  +PDV +Y+ LI       
Sbjct: 154 MFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVR-SGHEPDVISYNTLINGLCNSG 212

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             ++   +  +M   G + + VTYNTIID   K +   +     S MV   G  PD  T 
Sbjct: 213 NTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMV-GRGIPPDAITY 271

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
           NS++      G + +  + +      G K D+ T NI+  S  +  + +     +  M  
Sbjct: 272 NSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVD 331

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           +   P VVTY  ++      G + +    FKKM+ +G KP+ + Y +++ +  K  L+  
Sbjct: 332 QGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVND 391

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
               L ++ +  +  +   ++ I+  +   G +++  +LF  M  R+ +P+ +TF+ ++ 
Sbjct: 392 AMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVD 451

Query: 320 AYNALGMTEAAQ 331
                GM   A+
Sbjct: 452 GLCQEGMVSEAR 463



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 150/367 (40%), Gaps = 36/367 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  L E M+  G+ P V  YT ++      G L+EA      M+    CKPDV  Y+ 
Sbjct: 321 DAADFLSE-MVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQ-KGCKPDVVAYNT 378

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I S  K    +   + L+EM   GI  +AVTY+TI+ G+    + +E    F  MV   
Sbjct: 379 IIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRN 438

Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 156
                                             G  P+I+T N++++ Y     + +  
Sbjct: 439 VMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEAR 498

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           K +      G   D+ + NIL   Y  +   DK ++++  M  +   P  VTYN +++  
Sbjct: 499 KVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGL 558

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
              G +   +E FKKM   GM P  +TY  L++   K G + +   + + ++   +  D 
Sbjct: 559 CYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDI 618

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             +  +I      G +E    LF  +      P   T+  MI+     G+++ A  L  K
Sbjct: 619 ILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRK 678

Query: 337 MIAMKEN 343
              MK N
Sbjct: 679 WKMMKHN 685



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 144/336 (42%), Gaps = 2/336 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           + K KQ      L   M   G+  +V     L++   +   +D A S    M  +   +P
Sbjct: 103 IAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLG-IQP 161

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV T++ LI       +  +  ++  EM   G E   ++YNT+I+G   +         F
Sbjct: 162 DVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVF 221

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E  GC P++ T N++I +      +     + +E    G+  D  T N +      
Sbjct: 222 KKM-EQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCC 280

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  ++   +   M++    P VVTYNI+I++  K   +    ++  +M  +G+ P+ +T
Sbjct: 281 LGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVT 340

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +++      G + +   + +++E      D   +N II +  +   V    E    M 
Sbjct: 341 YTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMV 400

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +R   P+ +T++T++  +  LG  + A  L  +M+ 
Sbjct: 401 DRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVG 436



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 130/293 (44%), Gaps = 2/293 (0%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           +D+A ++   M  ++  +P +  +   + S  K  ++  +  +  +M   G+  +  + N
Sbjct: 74  VDDALASFYRMARMNP-RPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLN 132

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I+   +    +   S +  M + G   PD+ T  ++I+   N G I+   + YNE   
Sbjct: 133 ILINCLCRLNHVDFAVSVWGKMFKLG-IQPDVITFTTLINGVCNEGKIKVAVELYNEMVR 191

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G + D+ + N L      +G  +    V   M++    P VVTYN +I++  K   +  
Sbjct: 192 SGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVND 251

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
             ++  +M  RG+ P++ITY S+V      G + +   + +++E +    D   +N II 
Sbjct: 252 AMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIID 311

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +  +   V    +    M ++   PD +T+ T++     LG    A  L  KM
Sbjct: 312 SLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKM 364


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 149/327 (45%), Gaps = 2/327 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  ML  G+ P+V    +++    +   +D+A + +  M       P+  TY+ L
Sbjct: 139 KAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMID-EHIMPNCTTYNSL 197

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       ++    +IL EMS  G   + VTYN +ID   K+    E    F++M++SG 
Sbjct: 198 IHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGP 257

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD  T  S++  Y   GN+ +M    +     G++++  T +I   +Y + G  D+  
Sbjct: 258 -KPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEAS 316

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
                MQ+  F P +VTY  VI+   K G ++     F +M   G+ PN IT+ +L+  +
Sbjct: 317 LTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGF 376

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
           S  G   K + +  ++ +  +  D   F  +I    + G V +  +LF  M      P+ 
Sbjct: 377 SMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNV 436

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI 338
           +++ TMI  Y   G       L + M+
Sbjct: 437 VSYNTMIHGYFIAGEVGEVMKLLDDML 463



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 116/251 (46%), Gaps = 2/251 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  M+  G KP    Y +L+  Y   G L E  + + D+   +  + + +T+SI 
Sbjct: 244 EAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVE-MNNVKDLMVQNGMRSNHHTFSIE 302

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I +  K  R D       +M  LG     VTY T+IDG  K  + ++  S F  M++ G 
Sbjct: 303 IYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDG- 361

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P+I T  ++I  +   G  EK E+ + E    G+  D+     +     + G   + +
Sbjct: 362 LSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQ 421

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            + D M +    P VV+YN +I  +  AG + ++ +    M   G+KP ++T+ +L+   
Sbjct: 422 KLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGM 481

Query: 252 SKAGLIMKVDS 262
              GL   VD+
Sbjct: 482 VSMGLKPDVDT 492



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 150/321 (46%), Gaps = 3/321 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ++  GL+     +T L+          +A + +        C PDV++YS L+K      
Sbjct: 39  IIKTGLRADAVAFTPLLRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEK 98

Query: 80  RFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
           + +   +++  M+  G  C    V+Y+T+I G+ K     +  + F  M++  G  P++ 
Sbjct: 99  KCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDH-GIPPNVV 157

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T NS+I        ++K E    +     +  +  T N L   Y  +G + +   ++  M
Sbjct: 158 TCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEM 217

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
            +    P VVTYN++I+   K+G   +  E F  M   G KP++ TY SL+  Y+  G +
Sbjct: 218 SRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNL 277

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
           ++++++   +  + +  +   F+  I AY + G +++    F+ M++   +PD +T+ T+
Sbjct: 278 VEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTV 337

Query: 318 IQAYNALGMTEAAQNLENKMI 338
           I     +G  + A +   +MI
Sbjct: 338 IDGLCKIGRLDDAMSRFCQMI 358



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 130/308 (42%), Gaps = 3/308 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDL 83
           + P +  +  L+S    +G L+  F+ +  +   +  + D   ++ L+++ C K    D 
Sbjct: 9   VAPDIATFGILISCCCDAGCLNLGFAALGQIIK-TGLRADAVAFTPLLRTLCAKKRTSDA 67

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSM 142
           +  +L  M  LG      +Y+T++ G    KK EE       M E G  C PD+ + +++
Sbjct: 68  MNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTV 127

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           I  +   G++ K    + +    G+  ++ T N +     +    DK  +V+  M     
Sbjct: 128 IHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHI 187

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P   TYN +I  +  +G   +     K+M   G +PN +TY  L+    K+G   +   
Sbjct: 188 MPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEARE 247

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           I   +  S    D   +  ++  Y   G++ +M  +   M +     ++ TF+  I AY 
Sbjct: 248 IFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYC 307

Query: 323 ALGMTEAA 330
             G  + A
Sbjct: 308 KCGRLDEA 315



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 18/166 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LF  M+  G+ P V ++TA++    + G + EA   + D+   +  KP+V +Y+ 
Sbjct: 383 EKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEA-QKLFDLMPRAGAKPNVVSYNT 441

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I           + K+L +M  +G++ +AVT+NT++DG                MV S 
Sbjct: 442 MIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDG----------------MV-SM 484

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           G  PD+ T  ++I +    G IE +   + E      K D  T NI
Sbjct: 485 GLKPDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENI 530


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 169/375 (45%), Gaps = 66/375 (17%)

Query: 1   MVMLGKCKQ--PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           ++M G CK+     A  +F+ ML  G+ P V +YT L+S+    G +++A   +  MK  
Sbjct: 219 VLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKE- 277

Query: 59  SDCKPDVYTYSILIKSCTK-------FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 111
           + C PD  TY++ +    K       FHRF+L++         G     + Y+ +IDG  
Sbjct: 278 NGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDG-------GFTLGLIGYSCLIDGLF 330

Query: 112 KAKKFEEMESSFSAMV-------------------ESG---------------GCHPDIF 137
           +A +F+E  S ++ M+                   E+G               G  PD F
Sbjct: 331 QAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTF 390

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
             N+++ A  + GNI++ +   +E     V  D  T NI+     + G+ DK   V D M
Sbjct: 391 CYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEM 450

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP--------------NSIT 243
            +    PTV+TYN +I+   +AG +E+    F KM+  G  P              ++ +
Sbjct: 451 GEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKMEM-GNNPSLFLRLTLGANQVRDTES 509

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
              LV    ++G ++K   +LR +  S V+ D   +N +I+   +A +++    LF  ++
Sbjct: 510 LRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQ 569

Query: 304 ERHCVPDNITFATMI 318
            +   PD IT+ T+I
Sbjct: 570 LKGISPDEITYGTLI 584



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 142/316 (44%), Gaps = 10/316 (3%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRFDLI 84
           +P+  VY A+       G++  A +  N M S S C P+  TY +L+   C +    D +
Sbjct: 176 RPTAFVYNAVFQVLVDRGVILLALALYNRMVS-SGCLPNSTTYIVLMDGLCKRGMAVDAL 234

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
            K+  EM   GI      Y  ++       + E+      +M E+G C PD  T    +S
Sbjct: 235 -KMFDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENG-CPPDEVTYTVFLS 292

Query: 145 AYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
               +G +++    ++ F L+   G    +   + L     +AG +D+  S    M  + 
Sbjct: 293 GLCKAGRVDEA---FHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKS 349

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P +  Y I+I  F +AG  +       +MK +G  P++  Y +L+ A    G I +  
Sbjct: 350 ISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQ 409

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           S++ ++  ++V+LD+   N +I    + G ++K  ++F  M E  C P  +T+  +I   
Sbjct: 410 SLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGL 469

Query: 322 NALGMTEAAQNLENKM 337
              GM E A+ L +KM
Sbjct: 470 YRAGMLEEARMLFHKM 485



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 133/294 (45%), Gaps = 15/294 (5%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           ML   + P + +YT L+  + ++G   +AF  +++MK      PD + Y+ L+K+     
Sbjct: 345 MLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKD-KGFVPDTFCYNTLLKALFDVG 403

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
             D  + +++EM    +   + T+N +I G  K    ++    F  M E G CHP + T 
Sbjct: 404 NIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHG-CHPTVMTY 462

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNL-----------MGVKA--DIQTLNILTKSYGRAGM 186
           N++I     +G +E+    +++  +           +G     D ++L  L     ++G 
Sbjct: 463 NALIDGLYRAGMLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQ 522

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
             K   ++  + +    P VVTYN +I    KA +++     FK+++ +G+ P+ ITY +
Sbjct: 523 VLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGT 582

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           L+    +A        + + +  S      P +N ++ +  +   + +   L+L
Sbjct: 583 LIDGLWRAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAINLWL 636



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 127/315 (40%), Gaps = 37/315 (11%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL      + ALV A+  +G   EA    + M    DC+P  + Y+ + +         L
Sbjct: 139 GLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDF-DCRPTAFVYNAVFQVLVDRGVILL 197

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +   M   G   ++ TY  ++DG  K     +    F  M+E G   PD+     ++
Sbjct: 198 ALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERG-IVPDVKIYTVLL 256

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           S+  N G IE   +        G   D  T  +      +AG  D+     + +Q   F 
Sbjct: 257 SSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFT 316

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
             ++ Y+ +I+   +AG  ++   Y+ +M  + + P+   Y  L+  +++AG        
Sbjct: 317 LGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAG-------- 368

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             + +++ ++LD                          MK++  VPD   + T+++A   
Sbjct: 369 --RTKDAFLLLDE-------------------------MKDKGFVPDTFCYNTLLKALFD 401

Query: 324 LGMTEAAQNLENKMI 338
           +G  + AQ+L ++M+
Sbjct: 402 VGNIDRAQSLMSEML 416



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 85/213 (39%), Gaps = 56/213 (26%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---------- 48
           +++ G CK+   ++A  +F+ M   G  P+V  Y AL+    ++G+L+EA          
Sbjct: 429 IMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKMEMG 488

Query: 49  ------------FSTINDMKSV-------------------------SDCKPDVYTYSIL 71
                        + + D +S+                         S   PDV TY+ L
Sbjct: 489 NNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTL 548

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K    D   ++  E+   GI    +TY T+IDG  +A +  +    F  ++ SGG
Sbjct: 549 INGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRSGG 608

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
             P +   N+M+ +      + +M+K     NL
Sbjct: 609 -FPSLPIYNTMMRS------LCRMKKLSQAINL 634


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 1/280 (0%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V T+ ++I    K  +F     ++ +M   G   S +TYNTIIDGY KA K  + ++  
Sbjct: 228 NVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALL 287

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV +   HP+  T N +I  +    N+   +K + E    G++ ++ T N L      
Sbjct: 288 KEMV-AKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCS 346

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+   + D M      P VVTYN +I  F K   +++  E    +  RG+ PN IT
Sbjct: 347 NGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVIT 406

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +L+ AY KAG +     +   + ++ V  +   +NC+I  + + G+V++  +L   M+
Sbjct: 407 FNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEME 466

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
                 D +T+  ++ A    G T  A  L ++M  +  N
Sbjct: 467 GNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLN 506



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 160/332 (48%), Gaps = 6/332 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +++ M+   +  +V  +  +++   + G   +A   + DMK+     P V TY+ +I   
Sbjct: 216 VYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWG-FSPSVITYNTIIDGY 274

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +    + +L EM    I  + +T+N +IDG+ + +     +  F  M +  G  P+
Sbjct: 275 CKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEM-QRQGLQPN 333

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T NS+I+   ++G +++     ++ + MG+K ++ T N L   + +  M  + R ++D
Sbjct: 334 VVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLD 393

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            + KR   P V+T+N +I+ +GKAG ++        M   G+ PN  TY  L+  + + G
Sbjct: 394 DIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREG 453

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + +   + +++E + +  D   +N ++ A  + G+  K   L   M E    P ++T+ 
Sbjct: 454 NVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYN 513

Query: 316 TMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
            +I  Y   G + AA N+   M    E  G++
Sbjct: 514 ALIDGYFREGNSTAALNVRTLM----EKKGRR 541



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 132/255 (51%), Gaps = 2/255 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A  +FE M   GL+P+V  Y +L++    +G LDEA   + D  S    KP+V TY+ LI
Sbjct: 318 AKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALG-LQDKMSGMGLKPNVVTYNALI 376

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               K        ++L ++   G+  + +T+NT+ID YGKA + ++     S M+++G C
Sbjct: 377 NGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC 436

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            P++ T N +I  +   GN+++  K   E    G+KAD+ T NIL  +  + G   K   
Sbjct: 437 -PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVR 495

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++D M +    P+ +TYN +I+ + + G+          M+ +G + N +TY  L+  + 
Sbjct: 496 LLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFC 555

Query: 253 KAGLIMKVDSILRQV 267
             G + + + +L ++
Sbjct: 556 NKGKLEEANRLLNEM 570



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 166/343 (48%), Gaps = 10/343 (2%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G CK  + ++A  + E M + G  PSV  Y  ++  Y ++G + +A + + +M + 
Sbjct: 234 VVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVA- 292

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               P+  T++ILI    +       +K+  EM   G++ + VTYN++I+G     K +E
Sbjct: 293 KRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDE 352

Query: 119 ---MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
              ++   S M    G  P++ T N++I+ +     +++  +  ++    G+  ++ T N
Sbjct: 353 ALGLQDKMSGM----GLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L  +YG+AG  D    +   M      P V TYN +I  F + G++++  +  K+M+  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G+K + +TY  LV A  K G   K   +L ++    +      +N +I  Y + G+    
Sbjct: 469 GLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAA 528

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             +   M+++    + +T+  +I+ +   G  E A  L N+M+
Sbjct: 529 LNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEML 571



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 139/309 (44%), Gaps = 14/309 (4%)

Query: 35  LVSAYGQSGLLD---EAFSTINDMK---SVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88
           LV AY ++G +D   E F    D     S   C P       ++ S  K  R  ++E + 
Sbjct: 165 LVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNP-------MLVSLVKEGRIGVVESVY 217

Query: 89  AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
            EM    I  + VT++ +I+G  K  KF++       M ++ G  P + T N++I  Y  
Sbjct: 218 KEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM-KAWGFSPSVITYNTIIDGYCK 276

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +G + K +    E     +  +  T NIL   + R       + V + MQ++   P VVT
Sbjct: 277 AGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVT 336

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +I      G +++      KM   G+KPN +TY +L++ + K  ++ +   +L  + 
Sbjct: 337 YNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIG 396

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              +  +   FN +I AYG+AG ++    L   M +    P+  T+  +I  +   G  +
Sbjct: 397 KRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVK 456

Query: 329 AAQNLENKM 337
            A+ L  +M
Sbjct: 457 EARKLAKEM 465



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 110/265 (41%), Gaps = 39/265 (14%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   ++A  + + +   GL P+V  +  L+ AYG++G +D+AF   + M     C 
Sbjct: 378 GFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVC- 436

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V TY+ LI    +        K+  EM   G++   VTYN ++D   K  +  +    
Sbjct: 437 PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRL 496

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M E  G +P   T N++I  Y   GN                      LN+ T    
Sbjct: 497 LDEMFEV-GLNPSHLTYNALIDGYFREGN------------------STAALNVRT---- 533

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                         M+K+     +VTYN++I+ F   G +E+      +M  +G+ PN  
Sbjct: 534 -------------LMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRT 580

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQV 267
           TY  L     + G I  +D  L  V
Sbjct: 581 TYDILRDEMMEKGFIPDIDGHLYNV 605



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 122/264 (46%), Gaps = 5/264 (1%)

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTI---IDGYGKAKKFEEMESSFS-AMVESGGCHPDI 136
           F  I  +      L +  +A  YN I   +D + K   +       S +++ S GC   I
Sbjct: 101 FGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSI 160

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
             ++ ++ AY  +G ++   + ++     G +    + N +  S  + G    + SV   
Sbjct: 161 I-VDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKE 219

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M +R     VVT+++VI    K G  +K  +  + MK  G  P+ ITY +++  Y KAG 
Sbjct: 220 MIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGK 279

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
           + K D++L+++    +  +   FN +I  + +  +V    ++F  M+ +   P+ +T+ +
Sbjct: 280 MFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNS 339

Query: 317 MIQAYNALGMTEAAQNLENKMIAM 340
           +I    + G  + A  L++KM  M
Sbjct: 340 LINGLCSNGKLDEALGLQDKMSGM 363



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 86/203 (42%), Gaps = 21/203 (10%)

Query: 157 KWYN-EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY------ 209
           KW   EF   G   +++    L      A  Y+K+R+++D   K   +     +      
Sbjct: 95  KWTQKEF---GAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVL 151

Query: 210 -----------NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
                      ++++  + K G ++   E F +    G + ++++   ++ +  K G I 
Sbjct: 152 GSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIG 211

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
            V+S+ +++    + ++   F+ +I+   + G  +K G++   MK     P  IT+ T+I
Sbjct: 212 VVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTII 271

Query: 319 QAYNALGMTEAAQNLENKMIAMK 341
             Y   G    A  L  +M+A +
Sbjct: 272 DGYCKAGKMFKADALLKEMVAKR 294


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 7/350 (2%)

Query: 5   GKCKQPEQA---SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           G CK  + +    L F+  L+ G         AL+    ++G LDEAF    ++     C
Sbjct: 468 GLCKHGKHSKALELWFQ-FLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILG-RGC 525

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
             D  +Y+ LI  C    + D     L EM   G++    TY+ +I G     K EE   
Sbjct: 526 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEE-AI 584

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F    +  G  PD++T + MI     +   E+ +++++E     V+ +    N L ++Y
Sbjct: 585 QFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAY 644

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R+G       + + M+ +   P   TY  +I+       +E+ +  F++M+  G++PN 
Sbjct: 645 CRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNV 704

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             Y +L+  Y K G ++KV+ +LR++ + +V  +   +  +I  Y + G+V +   L   
Sbjct: 705 FHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNE 764

Query: 302 MKERHCVPDNITFATMIQAY-NALGMTEAAQNLENKMIAMKENSGKKLIQ 350
           M+E+  VPD+IT+   I  Y    G+ EA +  + +  A       KLIQ
Sbjct: 765 MREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDEENYAAIIEGWNKLIQ 814



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 126/262 (48%), Gaps = 11/262 (4%)

Query: 43  GLLDEAFSTINDMKSVSDCKPDVYTY---SILIKS-CTKFHRFD--LIEKILAEMSYLGI 96
           GL D   +  + M S+S C  +        +LI+  CT+F R    L   +   ++  G+
Sbjct: 152 GLRDSRVAIADAMASLSLCFDEEIRRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGM 211

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
             S  T N ++    +A +F++   +F  + +  G  PD++   + I+A+   G +E+  
Sbjct: 212 FPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--GVSPDVYLFTTAINAFCKGGKVEEAV 269

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           K +++    GV  ++ T N +    G  G YD+     + M +R   PT++TY+I+++  
Sbjct: 270 KLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGL 329

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            +A  I       K+M  +G  PN I Y +L+ ++ +AG + K   I   + +  + L +
Sbjct: 330 TRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTS 389

Query: 277 PFFNCIISAY---GQAGDVEKM 295
             +N +I  Y   GQA + E++
Sbjct: 390 STYNTLIKGYCKNGQADNAERL 411



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 138/346 (39%), Gaps = 50/346 (14%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLD---EAFSTINDMKSVSDCKPDVYTYSILI 72
           +F V+ + G+ PS      L+++  ++       EAF  +   K VS   PDVY ++  I
Sbjct: 202 VFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV--CKGVS---PDVYLFTTAI 256

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
            +  K  + +   K+ ++M   G+  + VT+NT+IDG G   +++E       MVE G  
Sbjct: 257 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERG-M 315

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            P + T + ++     +  I        E    G   ++   N L  S+  AG  +K   
Sbjct: 316 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 375

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM-------------------- 232
           + D M  +    T  TYN +I+ + K G  +  E   K+M                    
Sbjct: 376 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 435

Query: 233 KH---------------RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
            H               R M P      +L+S   K G   K   +  Q  N   ++DT 
Sbjct: 436 SHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR 495

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKE---RHCVPDNITFATMIQA 320
             N ++    +AG   K+ E F   KE   R CV D +++ T+I  
Sbjct: 496 TSNALLHGLCEAG---KLDEAFRIQKEILGRGCVMDRVSYNTLISG 538



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 138/325 (42%), Gaps = 9/325 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LF  M   G+ P+V  +  ++   G  G  DEAF     M      +P + TYSI
Sbjct: 266 EEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE-RGMEPTLITYSI 324

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+K  T+  R      +L EM+  G   + + YN +ID + +A    +       MV S 
Sbjct: 325 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV-SK 383

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G      T N++I  Y  +G  +  E+   E   +G   +  +   +        M+D  
Sbjct: 384 GLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSA 443

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              +  M  R   P       +I    K G   K  E + +  ++G   ++ T  +L+  
Sbjct: 444 LRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHG 503

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE---RHC 307
             +AG + +   I +++     ++D   +N +IS  G  G  +K+ E F+ + E   R  
Sbjct: 504 LCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS--GCCGK-KKLDEAFMFLDEMVKRGL 560

Query: 308 VPDNITFATMIQA-YNALGMTEAAQ 331
            PDN T++ +I   +N   + EA Q
Sbjct: 561 KPDNYTYSILICGLFNMNKVEEAIQ 585



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 153/383 (39%), Gaps = 51/383 (13%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + K+   A  + + M   G  P+V VY  L+ ++ ++G L++A   I D+        
Sbjct: 329 LTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE-IKDLMVSKGLSL 387

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM---- 119
              TY+ LIK   K  + D  E++L EM  +G   +  ++ ++I        F+      
Sbjct: 388 TSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFV 447

Query: 120 -ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNEFNLMGVKADIQTLNIL 177
            E     M   GG       L ++IS     G   K +E W+   N  G   D +T N L
Sbjct: 448 GEMLLRNMSPGGG------LLTTLISGLCKHGKHSKALELWFQFLN-KGFVVDTRTSNAL 500

Query: 178 TKSYGRAGMYDKMRSV-----------------------------------MDFMQKRFF 202
                 AG  D+   +                                   +D M KR  
Sbjct: 501 LHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGL 560

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P   TY+I+I        +E+  +++   K  GM P+  TY  ++    KA    +   
Sbjct: 561 KPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQE 620

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
              ++ + +V  +T  +N +I AY ++G +    EL   MK +   P++ T+ ++I+  +
Sbjct: 621 FFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMS 680

Query: 323 ALGMTEAAQNL--ENKMIAMKEN 343
            +   E A+ L  E +M  ++ N
Sbjct: 681 IISRVEEAKLLFEEMRMEGLEPN 703


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 157/324 (48%), Gaps = 2/324 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M   G+   V  Y+ L+  +   G L EA   +N+M  +    P+VYTY+IL+ + 
Sbjct: 221 LFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEM-VLKTINPNVYTYNILVDAL 279

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +    + +LA M    ++   +TY+T++DGY    + ++ +  F+AM    G  PD
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAM-SLMGVTPD 338

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T   +I+ +  +  +++    + E +   +   I T + L     ++G    +  ++D
Sbjct: 339 VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLID 398

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ R     V+TY+ +I+   K GH+++    F KMK + ++PN  T+  L+    K G
Sbjct: 399 EMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGG 458

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +     + + +      L+   +N +I+ + + G +E+   +   M++  C+P+  TF 
Sbjct: 459 RLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFE 518

Query: 316 TMIQAYNALGMTEAAQNLENKMIA 339
           T+I A       + A+ L  +MIA
Sbjct: 519 TIIIALFKKDENDKAEKLLRQMIA 542



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 154/312 (49%), Gaps = 2/312 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP+V++Y+ ++ A  +  L+ EA+   ++M +V     DV TYS LI       +     
Sbjct: 196 KPNVEMYSTIIDALCKYQLVSEAYGLFSEM-TVKGISADVVTYSTLIYGFCIEGKLKEAI 254

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +L EM    I  +  TYN ++D   K  K +E +S  + M+++    PD+ T ++++  
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC-VKPDVITYSTLMDG 313

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           Y     ++K +  +N  +LMGV  D+ T  IL   + +  M D+  ++   M ++   P 
Sbjct: 314 YFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPG 373

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           +VTY+ +I+   K+G I  + +   +M+ RG   + ITY SL+    K G + +  ++  
Sbjct: 374 IVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFN 433

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++++ ++  +   F  ++    + G ++   E+F  +  +    +  T+  MI  +   G
Sbjct: 434 KMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQG 493

Query: 326 MTEAAQNLENKM 337
           + E A  + +KM
Sbjct: 494 LLEEALTMLSKM 505



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 3/298 (1%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K  E   LL E++L   + P+V  Y  LV A  + G + EA S +  M      KPDV T
Sbjct: 249 KLKEAIGLLNEMVLKT-INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC-VKPDVIT 306

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           YS L+      +     + +   MS +G+     TY  +I+G+ K K  +E  + F  M 
Sbjct: 307 YSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMH 366

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           +     P I T +S+I     SG I  +    +E    G  AD+ T + L     + G  
Sbjct: 367 QKNMV-PGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHL 425

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D+  ++ + M+ +   P + T+ I+++   K G ++  +E F+ +  +G   N  TY  +
Sbjct: 426 DRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVM 485

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           ++ + K GL+ +  ++L ++E++  I +   F  II A  +  + +K  +L   M  R
Sbjct: 486 INGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIAR 543



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 106/227 (46%), Gaps = 2/227 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F  M   G+ P V  YT L++ + ++ ++DEA +   +M    +  P + TYS 
Sbjct: 321 KKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQ-KNMVPGIVTYSS 379

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  R   +  ++ EM   G     +TY+++IDG  K    +   + F+ M +  
Sbjct: 380 LIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQE 439

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P+IFT   ++      G ++  ++ + +    G   ++ T N++   + + G+ ++ 
Sbjct: 440 -IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEA 498

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            +++  M+     P   T+  +I    K    +K E+  ++M  RG+
Sbjct: 499 LTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 92/205 (44%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P I   N ++ ++    +        +   L G++ D+ TLNIL   +   G      SV
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           +  + KR + P  VT N +I+     G ++K   +  K+  +G + N ++Y +L++   K
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCK 176

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
            G       +LR+++      +   ++ II A  +   V +   LF  M  +    D +T
Sbjct: 177 IGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVT 236

Query: 314 FATMIQAYNALGMTEAAQNLENKMI 338
           ++T+I  +   G  + A  L N+M+
Sbjct: 237 YSTLIYGFCIEGKLKEAIGLLNEMV 261



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 128/299 (42%), Gaps = 8/299 (2%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           +D+A S  N M  +    P +  ++ ++ S  K   +     +   +   GI+   +T N
Sbjct: 40  VDDAVSQFNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I+ +    +      S  A +   G  PD  TLN++I      G ++K   ++++   
Sbjct: 99  ILINCFCHMGQIT-FGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLA 157

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNIVIETFGKAGH 221
            G + +  +   L     + G     R  +  ++K   R   P V  Y+ +I+   K   
Sbjct: 158 QGFQLNQVSYATLINGVCKIG---DTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQL 214

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           + +    F +M  +G+  + +TY +L+  +   G + +   +L ++    +  +   +N 
Sbjct: 215 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           ++ A  + G V++   +   M +    PD IT++T++  Y  +   + AQ++ N M  M
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 333


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 153/366 (41%), Gaps = 37/366 (10%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  QA  LF  M   G+ PS   YT L+  + +    + A+  +  M S   C 
Sbjct: 85  GLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMAS-RKCS 143

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P VY+Y  +I    K  + D   ++  EM   G +   VTYNT+I G    ++  E +  
Sbjct: 144 PTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDL 203

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT---- 178
            + MVE+    PD  T  ++I     +  I++    +      G   D+ T  +L     
Sbjct: 204 LTVMVENSF-QPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLC 262

Query: 179 -----------------------------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
                                        +  GR   +D+   ++  M +R   P VVTY
Sbjct: 263 IRRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTY 322

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
               +  G      +    F++M  +G++P+ + Y  LV  + KA  +   + ++R ++ 
Sbjct: 323 TAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQ 382

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
           S +  +   +N ++  + + G VE +GEL  TM  R   PD  T++T++     +G  +A
Sbjct: 383 SGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQVDA 442

Query: 330 AQNLEN 335
           A +  N
Sbjct: 443 AYSFLN 448



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 132/333 (39%), Gaps = 37/333 (11%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM---KSVSD-----------CK--- 62
           + S   KP+   Y  LV A  ++G +D+A STI +M   K V D           CK   
Sbjct: 1   IFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARR 60

Query: 63  -------------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                        PDV TY+ L+    K  R      +   M   GI  S VTY T+ID 
Sbjct: 61  ISRAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDV 120

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           + K  +FE        M  S  C P +++  S+I+    +  +++  + + E  L G K 
Sbjct: 121 FCKMCQFETAYGLLQLMA-SRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKP 179

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           D  T N L           + + ++  M +  F P  +T+  +IE       I++    F
Sbjct: 180 DRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLF 239

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD--VILDTPFFNCIISAYG 287
           + M  +G  P+ +T+  LVS       +    S++R        VIL TP F       G
Sbjct: 240 QGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAVILYTPIFR----ELG 295

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           +    ++   L   M  R   P+ +T+    + 
Sbjct: 296 RRRGFDRAARLLQKMARRGVAPNVVTYTAFFKG 328



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 114/293 (38%), Gaps = 47/293 (16%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVY------------------------------- 32
           L K ++ +QA  LFE M   G KP    Y                               
Sbjct: 156 LCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPD 215

Query: 33  ----TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI-KSCTKFHRFDLIEKI 87
               TAL+     +  + EAF     M     C PD+ T+++L+ K C    R  L   +
Sbjct: 216 KITFTALIEGLCTTDRIKEAFVLFQGMAK-QGCAPDLVTHTVLVSKLCI---RRKLRPAL 271

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
               +Y     + + Y  I    G+ + F+        M    G  P++ T  +    + 
Sbjct: 272 SVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARR-GVAPNVVTYTAF---FK 327

Query: 148 NSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
             G+ ++  + Y EF  M   G++ D+   N+L   + +A   D    ++ +M +    P
Sbjct: 328 GLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPP 387

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
            +VTYN ++    + G +E + E    M  RG +P+  T+ +LV+   + G +
Sbjct: 388 NIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQV 440



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 2/157 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+ +  ++A+ L + M   G+ P+V  YTA     G       A+     M      +P
Sbjct: 294 LGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRMLE-QGIEP 352

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+  Y++L+    K +R D+ EK++  M   G+  + VTYNT++  + +  K E +    
Sbjct: 353 DMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELL 412

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
             MV S G  PD+ T +++++     G ++    + N
Sbjct: 413 HTMV-SRGRQPDVATWSTLVAGLFRVGQVDAAYSFLN 448



 Score = 45.4 bits (106), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P  ++Y  +++   + G I+K      +M    + P+  TY  ++    KA  I +    
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEF 67

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              +   DV+     +N ++    + G V +   LF +M+     P ++T+ T+I  +  
Sbjct: 68  FETMPEPDVVT----YNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 123

Query: 324 LGMTEAAQNLENKMIAMK 341
           +   E A  L   M + K
Sbjct: 124 MCQFETAYGLLQLMASRK 141



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 1/127 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG  K+  +A   F  ML  G++P +  Y  LV  + ++  LD A   +  M   S   P
Sbjct: 329 LGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQ-SGLPP 387

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY+ L+    +  + + I ++L  M   G +    T++T++ G  +  + +   S  
Sbjct: 388 NIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQVDAAYSFL 447

Query: 124 SAMVESG 130
           +  +  G
Sbjct: 448 NLAMSQG 454


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 149/319 (46%), Gaps = 2/319 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M ++G+ P+V  Y A++    QSG ++ A     +M+++   +PDV TY+ L+    K  
Sbjct: 334 MENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMG-LQPDVITYNSLLNGYCKAG 392

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
                  +  ++ + G+  + +TYN +IDGY +    EE       MVE G C PD+ T 
Sbjct: 393 SLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQG-CLPDVCTY 451

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
             ++    N+ ++    ++++E    G++ D    N   ++    G   K   + + M  
Sbjct: 452 TILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMML 511

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
                  VTYNI+I+   K G++   ++   KM H G++P+ ITY  L+ A+ + GL+ +
Sbjct: 512 EGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLRE 571

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
                + + +  +      +   I AY + G++      F  M E    P+ IT+  +I 
Sbjct: 572 ARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIH 631

Query: 320 AYNALGMTEAAQNLENKMI 338
           A    G T+ A    ++M+
Sbjct: 632 ALCRTGRTQLAYRHFHEML 650



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 4/285 (1%)

Query: 49  FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 108
            S  ++M S     PDV   + +++  +   R+D I  + AEM  LGIE S VTYNT++D
Sbjct: 187 LSAFHEMAS-HGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLD 245

Query: 109 GYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 167
            + K  + +++      M   G GC P+  T N +I+     G++E+  +      L   
Sbjct: 246 SFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRL-SK 304

Query: 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           KA   T N L       G   K   +   M+     PTVVTYN +I    ++G +E  + 
Sbjct: 305 KASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQV 364

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
            F +M+  G++P+ ITY SL++ Y KAG + +   +   + ++ +      +N +I  Y 
Sbjct: 365 KFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYC 424

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQ-AYNALGMTEAAQ 331
           + GD+E+   L   M E+ C+PD  T+  +++ ++NA  +  A +
Sbjct: 425 RLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMARE 469



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 133/310 (42%), Gaps = 2/310 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E A + F  M + GL+P V  Y +L++ Y ++G L EA     D++  +   P V TY
Sbjct: 358 QVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRH-AGLAPTVLTY 416

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +ILI    +    +   ++  EM   G      TY  ++ G   A         F  M+ 
Sbjct: 417 NILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEML- 475

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           S G  PD F  N+ I A    G I K  +      L G+ +D  T NIL     + G  +
Sbjct: 476 SKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLN 535

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
             + +   M      P  +TY  +I    + G + +  ++FK M   G+ P+++TY   +
Sbjct: 536 DAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFI 595

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
            AY + G +       R++    V  +   +N +I A  + G  +     F  M ER  V
Sbjct: 596 HAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLV 655

Query: 309 PDNITFATMI 318
           P+  T+  +I
Sbjct: 656 PNKYTYTLLI 665



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 158/355 (44%), Gaps = 36/355 (10%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV-SDCKPDVYTYSILI------ 72
           ML  G++PS+  Y  L+ ++ + G  D+    + +M++  S C P+  T++++I      
Sbjct: 228 MLQLGIEPSIVTYNTLLDSFLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARK 287

Query: 73  ----------------KSCTKFHRFDLIEKILA------------EMSYLGIECSAVTYN 104
                           K  + F    LI  +LA            EM   GI  + VTYN
Sbjct: 288 GDLEEAAEMVEGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYN 347

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I G  ++ + E  +  F  M  + G  PD+ T NS+++ Y  +G++++    + +   
Sbjct: 348 AMIHGLLQSGQVEAAQVKFVEM-RAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRH 406

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G+   + T NIL   Y R G  ++ R + + M ++   P V TY I+++    A  +  
Sbjct: 407 AGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAM 466

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
             E+F +M  +G++P+   Y + + A    G I K   +   +    +  DT  +N +I 
Sbjct: 467 AREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILID 526

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
              + G++    +L + M      PD IT+  +I A+   G+   A+     MI+
Sbjct: 527 GLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMIS 581



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 2/136 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
            +A   F+ M+SDGL PS   YT  + AY + G L  A+     M      +P+  TY++
Sbjct: 570 REARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLE-EGVEPNEITYNV 628

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI +  +  R  L  +   EM   G+  +  TY  +IDG  K   +E+    +  M ++ 
Sbjct: 629 LIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQN- 687

Query: 131 GCHPDIFTLNSMISAY 146
           G HPD  T  ++   +
Sbjct: 688 GIHPDYLTHKALFKGF 703


>gi|242032435|ref|XP_002463612.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
 gi|241917466|gb|EER90610.1| hypothetical protein SORBIDRAFT_01g002930 [Sorghum bicolor]
          Length = 638

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 149/322 (46%), Gaps = 4/322 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +Q+ +L   ML  G+ P    Y  +V A+  +G L       ++M  + +   D   Y  
Sbjct: 38  DQSEMLLRTMLEAGVSPDTVSYRYIVDAFASAGNLSRVAELFSEMAVMGNTA-DASAYLG 96

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++ T+         +L +M   G   +A TY  ++D YG+  +F+ +   F  M    
Sbjct: 97  LMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLYGRQGRFDGVRELFREM--RT 154

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T N +   YG+ G  +++ + +++    GV+ D+ T   +  + GR G+++  
Sbjct: 155 AVPPDTATYNVLFRVYGDGGFFKEVVELFHDMLETGVEPDMVTCENVMAACGRGGLHEDA 214

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R V+++M +    PT   Y  ++E  G A   E+    F  M   G  P   TY +L  A
Sbjct: 215 REVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTLETYNTLAFA 274

Query: 251 YSKAGLIMKVDSIL-RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           Y++ GL  + ++I  R   N+ +  +   F+ +I AY Q   ++   + ++ M++    P
Sbjct: 275 YARGGLFQEAEAIFSRMSNNAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNP 334

Query: 310 DNITFATMIQAYNALGMTEAAQ 331
           D  +   ++ AY   G+ + ++
Sbjct: 335 DERSLEGVLNAYCIAGVIDESK 356



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 134/340 (39%), Gaps = 39/340 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M   G       Y  L+ A+ + G   EA + +  M++   C P   TY +L+   
Sbjct: 78  LFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQA-DGCAPTAATYRVLLDLY 136

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  RFD + ++  EM    +     TYN +   YG    F+E+   F  M+E+G   PD
Sbjct: 137 GRQGRFDGVRELFREMR-TAVPPDTATYNVLFRVYGDGGFFKEVVELFHDMLETG-VEPD 194

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T  ++++A G  G  E   +        G+         L ++ G A MY++     +
Sbjct: 195 MVTCENVMAACGRGGLHEDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFN 254

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCSLV------ 248
            M +    PT+ TYN +   + + G  ++ E  F +M +  G++ N  ++ +L+      
Sbjct: 255 MMTEIGSLPTLETYNTLAFAYARGGLFQEAEAIFSRMSNNAGIQKNKDSFDALIEAYCQG 314

Query: 249 -----------------------------SAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
                                        +AY  AG+I +      ++++S  +     +
Sbjct: 315 AQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFEELQSSVTLPSIIAY 374

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
             ++S Y +        ++   MK       +   A++I+
Sbjct: 375 CMMLSLYARNDRWADAYDMLEEMKTNRASSTHQVIASLIK 414



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/301 (20%), Positives = 117/301 (38%), Gaps = 44/301 (14%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M   G+    E A  + E M  +G+ P+ D YT LV A G + + +EA+   N M  +  
Sbjct: 202 MAACGRGGLHEDAREVLEYMTREGMVPTADAYTGLVEALGHAAMYEEAYVAFNMMTEI-- 259

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
                                             G   +  TYNT+   Y +   F+E E
Sbjct: 260 ----------------------------------GSLPTLETYNTLAFAYARGGLFQEAE 285

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           + FS M  + G   +  + +++I AY     ++   K Y E        D ++L  +  +
Sbjct: 286 AIFSRMSNNAGIQKNKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNA 345

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-HRGMKP 239
           Y  AG+ D+ +   + +Q     P+++ Y +++  + +        +  ++MK +R    
Sbjct: 346 YCIAGVIDESKEQFEELQSSVTLPSIIAYCMMLSLYARNDRWADAYDMLEEMKTNRASST 405

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQ--VENSDVILDTPFFNCIISA---YGQAGDVEK 294
           + +    +   Y  +     V+  L    +E  D  L   FFN ++     +GQ G   +
Sbjct: 406 HQVIASLIKGEYDDSSNWQMVEYALENSTMEGCDYSLR--FFNALLDVLWWFGQKGRAAR 463

Query: 295 M 295
           +
Sbjct: 464 V 464



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 1/172 (0%)

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           V+ D+ T N L  +     + D+   ++  M +    P  V+Y  +++ F  AG++ ++ 
Sbjct: 17  VRPDLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYRYIVDAFASAGNLSRVA 76

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
           E F +M   G   ++  Y  L+ A+++ G   +  ++LRQ++          +  ++  Y
Sbjct: 77  ELFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQADGCAPTAATYRVLLDLY 136

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           G+ G  + + ELF  M+     PD  T+  + + Y   G  +    L + M+
Sbjct: 137 GRQGRFDGVRELFREMRT-AVPPDTATYNVLFRVYGDGGFFKEVVELFHDML 187



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 229 FKKMKHRG---MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           F +M+H     ++P+  TY +L++A +   L  + + +LR +  + V  DT  +  I+ A
Sbjct: 6   FAEMRHDASPSVRPDLTTYNTLLAAAAVRSLADQSEMLLRTMLEAGVSPDTVSYRYIVDA 65

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +  AG++ ++ ELF  M       D   +  +++A+  +G T  A  +  +M A
Sbjct: 66  FASAGNLSRVAELFSEMAVMGNTADASAYLGLMEAHTRVGATAEAVAVLRQMQA 119


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 166/373 (44%), Gaps = 43/373 (11%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD 60
           G CK  Q   A  L   +  +  +P V +Y  ++    +  L+ +AF    +M  K V  
Sbjct: 163 GLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVF- 221

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+V TY+ LI       + D    +L EM    +  +  T+NT++DG  K  K  E +
Sbjct: 222 --PNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAK 279

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S  + M++ G   PD+FT N+++  Y       K +  +N    MGV  D+ + +++   
Sbjct: 280 SLVAVMMKEG-VGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISG 338

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             +  M D+   + + M+     P VV Y+ +I+   K+G I    +Y  +M  RG  PN
Sbjct: 339 LSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPN 398

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY---GQAGDVEKMGE 297
            ITY SL+ A  K+  + K  ++L+++++  +  +   +N ++      G+  D +K+ +
Sbjct: 399 VITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQ 458

Query: 298 --------------------------------LFLTMKERHCVPDNITFATMIQAYNALG 325
                                           L   M+++ CVPD I + T+I A+    
Sbjct: 459 DLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKD 518

Query: 326 MTEAAQNLENKMI 338
           M + A+ L  +MI
Sbjct: 519 MNDKAEKLLREMI 531



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/296 (20%), Positives = 128/296 (43%), Gaps = 2/296 (0%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           L++A  + N M  +    P +  +  ++ S  K   + ++  +   M   GI+ + +T N
Sbjct: 30  LNDAIDSFNRMLRMRP-PPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLN 88

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I+ Y   ++     S F+ +++ G   PDI T  ++I     +G +++   +++    
Sbjct: 89  ILINSYCHLRQINSAFSVFAKILKLGY-QPDIITYTTLIRGLCLNGQVKESLNFHDRLVS 147

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
            G+K D  +   L     + G       ++  ++     P VV YN +I+   K   +  
Sbjct: 148 QGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRD 207

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
             + + +M  + + PN +TY SL+  +   G + K   +L ++   +V  +   FN ++ 
Sbjct: 208 AFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVD 267

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
              + G + +   L   M +    PD  T+  ++  Y  +     A+N+ N M  M
Sbjct: 268 GLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQM 323



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 86/185 (46%)

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
           +    L G++++  TLNIL  SY      +   SV   + K  + P ++TY  +I     
Sbjct: 72  FQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCL 131

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
            G +++   +  ++  +G+K + ++Y +L++   K G       +LR++E      D   
Sbjct: 132 NGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVM 191

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +N II    +   V    +L+  M E+   P+ +T+ ++I  +  +G  + A  L N+M+
Sbjct: 192 YNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMV 251

Query: 339 AMKEN 343
               N
Sbjct: 252 LKNVN 256



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 98/229 (42%), Gaps = 37/229 (16%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K  ++A  LFE M ++ + P V  Y++L+    +SG ++ A   +++M       P
Sbjct: 339 LSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQ-PP 397

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TY+ LI +  K H+ D    +L ++   GI+ +  TYN ++DG  K           
Sbjct: 398 NVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCK----------- 446

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
                                     G +   +K + +  + G   D+ T +I+     +
Sbjct: 447 -------------------------DGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCK 481

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
             ++D+  +++  M+ +   P  + Y  +I  F +    +K E+  ++M
Sbjct: 482 ESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  Q ++A  L + +   G++ ++  Y  LV    + G L +A     D+  +     
Sbjct: 409 LCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDL-LMKGHNV 467

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV TYSI+I    K   FD    +L++M   G    A+ Y TII+ + +    ++ E   
Sbjct: 468 DVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLL 527

Query: 124 SAMVE 128
             M++
Sbjct: 528 REMID 532


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 151/332 (45%), Gaps = 14/332 (4%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA  LF  M + G KP V  Y  L+  + + G LDEA   +  + S   C+PDV +++++
Sbjct: 234 QAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYG-CQPDVISHNMI 292

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY------GKAKKFEEMESSFSA 125
           ++S     R+    K+LA M   G   S VT+N +I+        GKA    EM      
Sbjct: 293 LRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEM------ 346

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
            +   G  P+  + N +I  + N   I++  ++       G   DI T NIL  +  + G
Sbjct: 347 -MPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDG 405

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D    ++  +  +   P++++YN VI+   K G  E   E  ++M ++G+KP+ IT  
Sbjct: 406 KVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCT 465

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           S+V   S+ G + +       ++   +  +   +N II+   ++       +    M  +
Sbjct: 466 SVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAK 525

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            C P   T+ T+I+     G+ E A  L N++
Sbjct: 526 GCKPTEATYTTLIKGITYEGLAEDASKLSNEL 557



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 152/352 (43%), Gaps = 17/352 (4%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++ G CK  E    L  V+   G+ P+   Y A++ +    G L +A   +      S 
Sbjct: 154 VLISGYCKSGEIEEAL-RVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQ-SK 211

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           C PDV T ++LI +  K        K+  EM   G +   VTYN +I G+ K  + +E  
Sbjct: 212 CYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDE-A 270

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GVKADIQTL 174
             F   + S GC PD+ + N ++ +  + G      +W +   L+      G    + T 
Sbjct: 271 IRFLKKLPSYGCQPDVISHNMILRSLCSGG------RWMDAMKLLATMLRKGCLPSVVTF 324

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           NIL     + G+  K  +V++ M K    P   ++N +I+ F     I++  EY + M  
Sbjct: 325 NILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVS 384

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           RG  P+ +TY  L++A  K G +     IL Q+ +         +N +I    + G  E 
Sbjct: 385 RGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAEL 444

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN--KMIAMKENS 344
             EL   M  +   PD IT  +++   +  G    A    +  K  A++ N+
Sbjct: 445 AVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNA 496



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 141/320 (44%), Gaps = 5/320 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+ S   E M + G  P V   TAL+  + + G    A S I  +   S    DV +Y++
Sbjct: 96  EEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNA-SQIMGILEESGAVIDVTSYNV 154

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI   + + +   IE+ L  +  +G+  +A TY+ ++       K ++        ++S 
Sbjct: 155 LI---SGYCKSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQS- 210

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C+PD+ T   +I A      + +  K +NE    G K D+ T N+L K + + G  D+ 
Sbjct: 211 KCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEA 270

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              +  +      P V+++N+++ +    G      +    M  +G  P+ +T+  L++ 
Sbjct: 271 IRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINF 330

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             + GL+ K  ++L  +       ++  FN +I  +     +++  E    M  R C PD
Sbjct: 331 LCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPD 390

Query: 311 NITFATMIQAYNALGMTEAA 330
            +T+  ++ A    G  + A
Sbjct: 391 IVTYNILLTALCKDGKVDDA 410



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 3/213 (1%)

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S    ++E  G   D+ + N +IS Y  SG IE+  +  +    MGV  +  T + +  S
Sbjct: 134 SQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEALRVLDR---MGVSPNAATYDAVLCS 190

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               G   +   V+    +   +P VVT  ++I+   K   + +  + F +M+++G KP+
Sbjct: 191 LCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPD 250

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +TY  L+  + K G + +    L+++ +     D    N I+ +    G      +L  
Sbjct: 251 VVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLA 310

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           TM  + C+P  +TF  +I      G+   A N+
Sbjct: 311 TMLRKGCLPSVVTFNILINFLCQKGLLGKALNV 343



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/189 (20%), Positives = 82/189 (43%), Gaps = 3/189 (1%)

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
           +G +E+  ++       G   D+     L + + + G       +M  +++      V +
Sbjct: 92  NGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTS 151

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN++I  + K+G I   EE  + +   G+ PN+ TY +++ +    G + +   +L +  
Sbjct: 152 YNVLISGYCKSGEI---EEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQL 208

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
            S    D      +I A  +   V +  +LF  M+ + C PD +T+  +I+ +   G  +
Sbjct: 209 QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLD 268

Query: 329 AAQNLENKM 337
            A     K+
Sbjct: 269 EAIRFLKKL 277



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 37/186 (19%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
            E+M+S G  P +  Y  L++A  + G +D+A   ++ + S   C P + +Y+ +I    
Sbjct: 379 LEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSS-KGCSPSLISYNTVIDGLL 437

Query: 77  KFHRFDLIEKILAEMSYLG-----IECSAVT----------------------------- 102
           K  + +L  ++L EM Y G     I C++V                              
Sbjct: 438 KVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAF 497

Query: 103 -YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
            YN+II G  K+++   +   F A + + GC P   T  ++I      G  E   K  NE
Sbjct: 498 IYNSIITGLCKSQQ-TSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNE 556

Query: 162 FNLMGV 167
               G+
Sbjct: 557 LYSRGL 562



 Score = 43.5 bits (101), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 88/208 (42%), Gaps = 17/208 (8%)

Query: 143 ISAYGNSG---NIEKMEKWYNEFNLMGVKADIQTLNI----------LTKSYGRAGMYDK 189
           +S Y NSG   N++  E+ +++  L GV++    +N             +   R G  ++
Sbjct: 39  VSKYENSGLKGNLQHSER-FSKGALNGVESSPDRVNTSLNFEESEIRHLRRLIRNGELEE 97

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
               +++M  +   P V+    +I  F K G  +   +    ++  G   +  +Y  L+S
Sbjct: 98  GSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLIS 157

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            Y K+G   +++  LR ++   V  +   ++ ++ +    G +++  ++     +  C P
Sbjct: 158 GYCKSG---EIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYP 214

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
           D +T   +I A         A  L N+M
Sbjct: 215 DVVTCTVLIDATCKESGVGQAMKLFNEM 242


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 153/322 (47%), Gaps = 2/322 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A +L + M+ +G +P V  Y ++V+   +SG    A   +  M+   + K DV+TYS +
Sbjct: 176 EAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEE-RNVKADVFTYSTI 234

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I S  +    D    +  EM   GI+ S VTYN+++ G  KA K+ +       MV S  
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV-SRE 293

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P++ T N ++  +   G +++  + Y E    G+  +I T N L   Y       +  
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEAN 353

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           +++D M +    P +VT+  +I+ +     ++   + F+ +  RG+  N++TY  LV  +
Sbjct: 354 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            ++G I   + + +++ +  V+ D   +  ++      G +EK  E+F  +++       
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGI 473

Query: 312 ITFATMIQAYNALGMTEAAQNL 333
           + + T+I+     G  E A NL
Sbjct: 474 VMYTTIIEGMCKGGKVEDAWNL 495



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 140/323 (43%), Gaps = 37/323 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M + G+K SV  Y +LV    ++G  ++    + DM S  +  P+V T+++L+   
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVF 308

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +     ++  EM   GI  + +TYNT++DGY    +  E  +    MV +  C PD
Sbjct: 309 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPD 367

Query: 136 IFTLNSMISAYG-----------------------------------NSGNIEKMEKWYN 160
           I T  S+I  Y                                     SG I+  E+ + 
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E    GV  D+ T  IL       G  +K   + + +QK      +V Y  +IE   K G
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            +E     F  +  +G+KPN +TY  ++S   K G + + + +LR++E      +   +N
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYN 547

Query: 281 CIISAYGQAGDVEKMGELFLTMK 303
            +I A+ + GD+    +L   MK
Sbjct: 548 TLIRAHLRDGDLTASAKLIEEMK 570



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 164/366 (44%), Gaps = 37/366 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + + A  LF+ M+     PS+  ++   SA  ++   +        ++ ++    ++YT 
Sbjct: 68  KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLE-LNGIAHNIYTL 126

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I+I    +  +      +L ++  LG E    T+NT+I G     K  E       MVE
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 186

Query: 129 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEK------------------------ 157
           +G C PD+ T NS+++    SG+       + KME+                        
Sbjct: 187 NG-CQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 158 ----WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                + E    G+K+ + T N L +   +AG ++    ++  M  R   P V+T+N+++
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
           + F K G +++  E +K+M  RG+ PN ITY +L+  Y     + + +++L  +  +   
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   F  +I  Y     V+   ++F  + +R  V + +T++ ++Q +   G  + A+ L
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 334 ENKMIA 339
             +M++
Sbjct: 426 FQEMVS 431



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 119/245 (48%), Gaps = 2/245 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ L++ M++ G+ P++  Y  L+  Y     L EA + + D+   + C PD+ T++ 
Sbjct: 315 QEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDIVTFTS 373

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LIK      R D   K+   +S  G+  +AVTY+ ++ G+ ++ K +  E  F  MV S 
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV-SH 432

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD+ T   ++    ++G +EK  + + +     +   I     + +   + G  +  
Sbjct: 433 GVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDA 492

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            ++   +  +   P V+TY ++I    K G + +     +KM+  G  PN  TY +L+ A
Sbjct: 493 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552

Query: 251 YSKAG 255
           + + G
Sbjct: 553 HLRDG 557



 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E A  LF  +   G+KP+V  YT ++S   + G L EA   +  M+   +  
Sbjct: 482 GMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGN-A 540

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 108
           P+  TY+ LI++  +        K++ EM   G    A +   +ID
Sbjct: 541 PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586


>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 642

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 149/336 (44%), Gaps = 2/336 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LGK K   +A  +F  +     KP+   Y +++    Q G L++     N+M +  +C 
Sbjct: 172 LLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCF 231

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  TYS LI +  K   +D   ++  EM   G+  +A  Y T++  Y K  K E+    
Sbjct: 232 PDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDV 291

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M +  GC   +FT    I   G +G ++   + + +    G K D+  +N L    G
Sbjct: 292 IKEM-KDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILG 350

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKPNS 241
           + G  +    +   M+     P VVTYN VI+  F       +   +F+KMK  G+ P+S
Sbjct: 351 KVGRLEVTLKLFRKMESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSS 410

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY  L+  + K   I K   +L +++          +  +I++ G+    E   ELFL 
Sbjct: 411 FTYSILIDGFCKTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLE 470

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +KE         +A MI+ +   G    A +L N+M
Sbjct: 471 LKENCGHSSARVYAVMIKHFGKCGRLSEAVDLFNEM 506



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 161/370 (43%), Gaps = 38/370 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK    + A  LF+ M  +GL P+  +YT L+  Y +   +++A   I +MK    C  
Sbjct: 244 FGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKD-KGCTL 302

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V+TY+  IK   K  R D   ++  +M   G +   V  N++I+  GK  + E     F
Sbjct: 303 TVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLF 362

Query: 124 SAMVESGGCHPDIFTLNSMISA-YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             M ES  C P++ T N++I A +       +   W+ +    G+     T +IL   + 
Sbjct: 363 RKM-ESWQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFC 421

Query: 183 RAGMYDKMRSVMDFMQKRFFFP-----------------------------------TVV 207
           +    +K   +++ M ++ F P                                   +  
Sbjct: 422 KTNRIEKALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSAR 481

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            Y ++I+ FGK G + +  + F +M+  G KP+   Y +L+S   +AG+I +  S+LR +
Sbjct: 482 VYAVMIKHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTM 541

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
           + +    D    N I++   + G  ++  E+F  MK     PD +++ T++   +  G+ 
Sbjct: 542 DENGCSPDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLF 601

Query: 328 EAAQNLENKM 337
           E A  L  +M
Sbjct: 602 EEAAKLMREM 611



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 141/324 (43%), Gaps = 38/324 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + + A  +F  M+ DG KP V +  +L++  G+ G L+        M+S   CKP
Sbjct: 314 LGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQ-CKP 372

Query: 64  DV------------------------------------YTYSILIKSCTKFHRFDLIEKI 87
           +V                                    +TYSILI    K +R +    +
Sbjct: 373 NVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKALLL 432

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
           L EM   G       Y ++I+  GK K++E     F  + E+ G H        MI  +G
Sbjct: 433 LEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCG-HSSARVYAVMIKHFG 491

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G + +    +NE   +G K D+   N L     RAGM D+ +S++  M +    P + 
Sbjct: 492 KCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLN 551

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           ++NI++    + G  ++  E F KMK   +KP++++Y +++   S AGL  +   ++R++
Sbjct: 552 SHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREM 611

Query: 268 ENSDVILDTPFFNCIISAYGQAGD 291
                  +   +  I+ A G+  +
Sbjct: 612 NLKGFEYNNITYTSILEAVGKVDE 635



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 130/307 (42%), Gaps = 1/307 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           + AL+ +  ++G   E + TI DM   S C       S ++K   K    +    +  ++
Sbjct: 130 FMALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFYQI 189

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
                + +A TYN++I    +    E++   ++ M   G C PD  T +++ISA+G  G+
Sbjct: 190 KGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGH 249

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
            +   + ++E    G+    +    L   Y +    +K   V+  M+ +    TV TY  
Sbjct: 250 YDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTE 309

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
            I+  GKAG ++     F  M   G KP+ +   SL++   K G +     + R++E+  
Sbjct: 310 WIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMESWQ 369

Query: 272 VILDTPFFNCIISAYGQA-GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              +   +N +I A  +      +    F  MK     P + T++ +I  +      E A
Sbjct: 370 CKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIEKA 429

Query: 331 QNLENKM 337
             L  +M
Sbjct: 430 LLLLEEM 436



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 99/248 (39%), Gaps = 21/248 (8%)

Query: 111 GKAKKFEEMESSFSA--------------------MVESGGCHPDIFTLNSMISAYGNSG 150
           GK + FE   SSF A                    MV S  C      L+ ++   G + 
Sbjct: 118 GKRRNFEHDSSSFMALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAK 177

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-QKRFFFPTVVTY 209
            + K    + +      K    T N +     + G  +K+  + + M      FP  VTY
Sbjct: 178 MVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTY 237

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           + +I  FGK GH +     F +MK  G+ P +  Y +L+  Y K   + K   +++++++
Sbjct: 238 SALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKD 297

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
               L    +   I   G+AG V+    +FL M +  C PD +   ++I     +G  E 
Sbjct: 298 KGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEV 357

Query: 330 AQNLENKM 337
              L  KM
Sbjct: 358 TLKLFRKM 365



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 1/166 (0%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           L+ + K  G+A M +K  SV   ++ R   P   TYN +I    + GH+EK+ E + +M 
Sbjct: 166 LSEIVKLLGKAKMVNKALSVFYQIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMC 225

Query: 234 HRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           + G   P+++TY +L+SA+ K G       +  +++ + +      +  ++  Y +   V
Sbjct: 226 NDGNCFPDTVTYSALISAFGKLGHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKV 285

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           EK  ++   MK++ C     T+   I+     G  + A  +   MI
Sbjct: 286 EKALDVIKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMI 331


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 133/277 (48%), Gaps = 1/277 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV++++++IK   K        +++  M   G     VT+N +++G  +AK+  +    
Sbjct: 232 PDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREV 291

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              +   G C P++ T  S+IS Y  +G +E     YN+   +G   ++ T N+L   YG
Sbjct: 292 LRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYG 351

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG      +V   M  R   P VVT++ +I+ + + G ++   + + +M    ++PN+ 
Sbjct: 352 KAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAH 411

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           T+C ++  + K     +    L+++   +D+      +N +I    + G V++   + + 
Sbjct: 412 TFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIE 471

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           M+E+ C PD  T+  +I  +   G    A    +KM+
Sbjct: 472 MEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMV 508



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 136/315 (43%), Gaps = 1/315 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
            + PS   Y  ++S   QSG   +A    + M   S   P+    S L  SC      D 
Sbjct: 122 AMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDA 181

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
              +L++ S  G    A  YN ++D +    + ++  + F   ++ G   PD+++ N +I
Sbjct: 182 AAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVI 241

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FF 202
                 G+++K  +     +  G   D  T NIL     RA    K R V+  +Q+    
Sbjct: 242 KGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVC 301

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P VVTY  VI  + KAG +E     +  M   G  PN +TY  L++ Y KAG +    +
Sbjct: 302 MPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVA 361

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           + +Q+     + D   F+ +I  Y + G ++   +++  M + H  P+  TF  +I  + 
Sbjct: 362 VYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFC 421

Query: 323 ALGMTEAAQNLENKM 337
               +  A +   KM
Sbjct: 422 KQNRSGEALHFLKKM 436



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 138/320 (43%), Gaps = 7/320 (2%)

Query: 11  EQASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           + A  LFE  +  G+  P V  +  ++    + G + +A   +  M     C PD  T++
Sbjct: 215 QDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFG-CSPDTVTHN 273

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           IL+    +        ++L  +   G+ C  + VTY ++I GY KA + E+  + ++ MV
Sbjct: 274 ILVNGLCRAKEVSKGREVLRRLQRDGV-CMPNVVTYTSVISGYCKAGRMEDAMAVYNDMV 332

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
            + G  P++ T N +I+ YG +GN+      Y +  L     D+ T + L   Y R G  
Sbjct: 333 -AVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQL 391

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCS 246
           D    +   M +    P   T+ I+I TF K     +   + KKM  R  + P +  Y  
Sbjct: 392 DDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNP 451

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++    K G + + + IL ++E      D   +  +I  +   G + +    F  M E  
Sbjct: 452 VIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETG 511

Query: 307 CVPDNITFATMIQAYNALGM 326
           C PD+I   + I      GM
Sbjct: 512 CSPDSIVVNSFISCLLKSGM 531



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 135/302 (44%), Gaps = 9/302 (2%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G CK    ++A  L E M   G  P    +  LV+   ++  + +    +  ++  
Sbjct: 239 VVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRD 298

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C P+V TY+ +I    K  R +    +  +M  +G   + VTYN +I+GYGKA     
Sbjct: 299 GVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGS 358

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             + +  M+    C PD+ T +S+I  Y   G ++   K + E     ++ +  T  I+ 
Sbjct: 359 AVAVYQQMILR-RCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIII 417

Query: 179 KSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            ++ +     +    +  M  R    P    YN VI+   K G +++      +M+ +G 
Sbjct: 418 HTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGC 477

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQ-VE---NSDVILDTPFFNCIISAYGQAGDVE 293
           +P+  TY  L+  +   G I +  +   + VE   + D I+   F +C++ + G  G+V+
Sbjct: 478 RPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKS-GMPGEVD 536

Query: 294 KM 295
            +
Sbjct: 537 HI 538



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/261 (19%), Positives = 105/261 (40%), Gaps = 35/261 (13%)

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
             L   + +  S L +  SA +Y  +I    ++ +  +    F  M +  G  P+   L+
Sbjct: 108 LHLFSALHSPHSQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLS 167

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY-GRAGMYDKMRSVMDFMQK 199
            +  +   +G ++      ++ +  G   +    N L   + G   + D +     ++Q 
Sbjct: 168 FLSGSCAAAGLLDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQG 227

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
             + P V ++N+VI+   K G ++K  E  ++M   G  P+++T+  LV+   +A  + K
Sbjct: 228 GVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSK 287

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +LR+++   V                                  C+P+ +T+ ++I 
Sbjct: 288 GREVLRRLQRDGV----------------------------------CMPNVVTYTSVIS 313

Query: 320 AYNALGMTEAAQNLENKMIAM 340
            Y   G  E A  + N M+A+
Sbjct: 314 GYCKAGRMEDAMAVYNDMVAV 334


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 155/340 (45%), Gaps = 9/340 (2%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLK--PSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           V+ G CK    E+A  L E M+  G K  P +  Y  L++A+ ++  + EA +    MK+
Sbjct: 138 VISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKA 197

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
            +   PDV T +IL+    K    +   +IL  M   G     +TYN+II     A K  
Sbjct: 198 -AGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVV 256

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E       M     C PD+ T N+++  +  +G + +  +   E     +  D+ T  IL
Sbjct: 257 EAAEILKTM----SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTIL 312

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                R G       +++ + ++ + P V+ Y  +++   K+G IE+  +  K+M  RG 
Sbjct: 313 VNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGC 372

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +   + Y SLVS Y +AG + K   IL ++ + +++     +N ++    + G + K   
Sbjct: 373 RTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVS 432

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           L   +  R  VPD +T+ T+I           A +L ++M
Sbjct: 433 LISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEM 472



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 154/335 (45%), Gaps = 11/335 (3%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM-KSVSDCKPDVYT 67
            P+QA  LFE M S  +KP +  Y  ++S   +SG L++A   + +M +      PD+ T
Sbjct: 112 NPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVT 171

Query: 68  YSILIKSCTKFHRFDLIEKILA---EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           Y+ LI +   F+R   I +  A   +M   GI    +T N ++ G  K    EE      
Sbjct: 172 YNTLINA---FYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILD 228

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +  G  PD+ T NS+I A   +G + +  +       M    D+ T N L   + +A
Sbjct: 229 GM-KLAGPVPDVITYNSIIHALCVAGKVVEAAEI---LKTMSCSPDLVTFNTLLDGFCKA 284

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           GM  +   V++ M +    P V+TY I++    + G ++      +++  +G  P+ I Y
Sbjct: 285 GMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAY 344

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SLV    K+G I +   +++++           ++ ++S Y +AG+V K  E+   M  
Sbjct: 345 TSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVS 404

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            + VP   T+  ++      G    A +L + ++A
Sbjct: 405 INMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVA 439



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 164/344 (47%), Gaps = 9/344 (2%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK  Q  +A      +    + P V ++  L+    + G  D+A     +M+S 
Sbjct: 67  ILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMES- 125

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA--VTYNTIIDGYGKAKKF 116
           S  KP++ TY+ +I    K    +   ++L EM   G + +   VTYNT+I+ + +A + 
Sbjct: 126 SRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRI 185

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
            E   +F   +++ G +PD+ T N ++S     G++E+  +  +   L G   D+ T N 
Sbjct: 186 RE-ACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNS 244

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +  +   AG   K+    + ++     P +VT+N +++ F KAG + +  E  ++M    
Sbjct: 245 IIHALCVAG---KVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCREN 301

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + P+ ITY  LV+   + G +     +L ++     I D   +  ++    ++G++E+  
Sbjct: 302 ILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAH 361

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           +L   M  R C    + +++++  Y   G    A+ +  +M+++
Sbjct: 362 KLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSI 405



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 140/312 (44%), Gaps = 11/312 (3%)

Query: 23  DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV--SDCKPDVYTYSILIKSCTKFHR 80
           DG K  V  Y  L+    +SG     F T    K +  S C P++ T+ ILI+   K  +
Sbjct: 21  DGYKHDVHSYNHLLDILVKSG---HHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQ 77

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
                + L  +    +      +N +I G  K    ++    F  M ES    P+I T N
Sbjct: 78  AMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENM-ESSRVKPEIVTYN 136

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKA--DIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
           ++IS    SGN+EK  +   E    G K+  DI T N L  ++ RA    +  +  + M+
Sbjct: 137 TVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMK 196

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
                P V+T NI++    K G +E+  E    MK  G  P+ ITY S++ A   AG ++
Sbjct: 197 AAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVV 256

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +   IL+ +  S    D   FN ++  + +AG + +  E+   M   + +PD IT+  ++
Sbjct: 257 EAAEILKTMSCSP---DLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILV 313

Query: 319 QAYNALGMTEAA 330
                +G  + A
Sbjct: 314 NGLCRVGQVQVA 325



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 131/318 (41%), Gaps = 7/318 (2%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    E+A  + + M   G  P V  Y +++ A   +G + EA   +  M     C 
Sbjct: 213 GICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS----CS 268

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD+ T++ L+    K        ++L EM    I    +TY  +++G  +  + +     
Sbjct: 269 PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYL 328

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              +V  G   PD+    S++     SG IE+  K   E ++ G +  +   + L   Y 
Sbjct: 329 LEEIVRQGYI-PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYC 387

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           RAG   K R ++  M      P + TYNIV+    K G I K       +  RG  P+ +
Sbjct: 388 RAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVV 447

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+    KA  + +   +  ++ +     +      ++    + G V+    L + M
Sbjct: 448 TYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEM 507

Query: 303 KERHCVPDNITFATMIQA 320
             +   P+ + + ++I  
Sbjct: 508 SRKRHAPNVVVYTSLIDG 525



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 130/318 (40%), Gaps = 4/318 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK     +A  + E M  + + P V  YT LV+   + G +  AF  + ++       
Sbjct: 280 GFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVR-QGYI 338

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV  Y+ L+    K    +   K++ EMS  G     V Y++++ GY +A    +    
Sbjct: 339 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREI 398

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + MV S    P +FT N ++      G+I K     ++    G   D+ T N L     
Sbjct: 399 LAEMV-SINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLC 457

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A    +   + D M  R  FP  VT   V+    + G ++       +M  +   PN +
Sbjct: 458 KANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVV 517

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y SL+    K+  +     +L  +    V LD   +  +I +    G V +   ++  M
Sbjct: 518 VYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEM 577

Query: 303 KERHCVPDNITFATMIQA 320
             R  +PD  T  T+ +A
Sbjct: 578 VARGFLPDGSTSKTLEEA 595



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%)

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V +YN +++   K+GH  +  + +K + H G  PN +T+  L+    KAG  M+    LR
Sbjct: 27  VHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLR 86

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            ++   V  D   FN +I    + G+ ++  +LF  M+     P+ +T+ T+I      G
Sbjct: 87  ALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSG 146

Query: 326 MTEAAQNLENKMIAMKENSGKKLI 349
             E A+ L  +MI     S   ++
Sbjct: 147 NLEKARELLEEMIRKGGKSAPDIV 170



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 38/250 (15%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F    E  G   D+ + N ++     SG+  +  K Y +    G   ++ T  IL +   
Sbjct: 14  FDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNC 73

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG   +    +  + +    P V  +N++I    K G+ ++  + F+ M+   +KP  +
Sbjct: 74  KAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIV 133

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQV--ENSDVILDTPFFNCIISAYGQA----------- 289
           TY +++S   K+G + K   +L ++  +      D   +N +I+A+ +A           
Sbjct: 134 TYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFRE 193

Query: 290 ------------------------GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
                                   GDVE+  E+   MK    VPD IT+ ++I A    G
Sbjct: 194 KMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAG 253

Query: 326 -MTEAAQNLE 334
            + EAA+ L+
Sbjct: 254 KVVEAAEILK 263


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 150/322 (46%), Gaps = 2/322 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M    +K SV  Y+ ++ +  + G LD+A S  N+M+ +   K DV  YS +I   
Sbjct: 231 LFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEME-MKGIKADVVAYSSIIGGL 289

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               R+D   K+L EM    I  + VT++ +ID + K  K  E +  ++ MV + G  PD
Sbjct: 290 CNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMV-ARGIAPD 348

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T +S+I  +     + +  +  +     G + +I T +IL  SY +A   D    +  
Sbjct: 349 TITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFC 408

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            +  +      VTYN +++ F ++G +   +E F++M  RG+ P+ +TY  L+      G
Sbjct: 409 EISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 468

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + K   I  +++ S +IL    +N II     A  V+    LF ++  +   PD +T+ 
Sbjct: 469 ELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYN 528

Query: 316 TMIQAYNALGMTEAAQNLENKM 337
            MI      G    A  L  KM
Sbjct: 529 VMIGGLCKKGSLSEADMLFRKM 550



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 144/311 (46%), Gaps = 2/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A  LF  M   G+K  V  Y++++      G  D+    + +M    +  P+V T+S 
Sbjct: 261 DDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIG-RNIIPNVVTFSA 319

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  +    +++  EM   GI    +TY+++IDG+ K  +  E       MV S 
Sbjct: 320 LIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMV-SK 378

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC P+I T + +I++Y  +  ++   + + E +  G+ AD  T N L + + ++G  +  
Sbjct: 379 GCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVA 438

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           + +   M  R   P+VVTY I+++     G ++K  E F+KM+   M      Y  ++  
Sbjct: 439 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHG 498

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
              A  +    S+   +    V  D   +N +I    + G + +   LF  MKE  C P 
Sbjct: 499 MCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPS 558

Query: 311 NITFATMIQAY 321
           + T+  +I+A+
Sbjct: 559 DCTYNILIRAH 569



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 121/268 (45%), Gaps = 39/268 (14%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L+  M++ G+ P    Y++L+  + +   L EA   ++ M S   C+P++ TYSIL
Sbjct: 332 EAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVS-KGCEPNIVTYSIL 390

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I S  K  R D   ++  E+S  G+    VTYNT++ G+ ++ K    +  F  MV S G
Sbjct: 391 INSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMV-SRG 449

Query: 132 CHPDIFTLNSMISAYGNSGNI-------EKMEK--------------------------W 158
             P + T   ++    ++G +       EKM+K                          W
Sbjct: 450 VPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAW 509

Query: 159 --YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET- 215
             +   ++ GVK D+ T N++     + G   +   +   M++    P+  TYNI+I   
Sbjct: 510 SLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAH 569

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G +G I  + E  ++MK RG   ++ T
Sbjct: 570 LGGSGVISSV-ELIEEMKMRGFAADAST 596



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 125/279 (44%), Gaps = 5/279 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  +S L  +  +   +DL+     EM   GIE +  T N +I+ + + +K   +  +
Sbjct: 67  PSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRK---LLFA 123

Query: 123 FSAMVES--GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           FS +  +   G  P+  T +++I+ +   G + +     +    M  + ++ T+N L   
Sbjct: 124 FSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLING 183

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
               G   +   ++D M K       +TY  V+    K+G+     + F+KM+ R +K +
Sbjct: 184 LCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKAS 243

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            + Y  ++ +  K G +    S+  ++E   +  D   ++ II      G  +   ++  
Sbjct: 244 VVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLR 303

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            M  R+ +P+ +TF+ +I  +   G    A+ L N+M+A
Sbjct: 304 EMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVA 342



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 76/373 (20%), Positives = 159/373 (42%), Gaps = 51/373 (13%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LFE M+     PS+  ++ L SA  +    D       +M  ++  + ++YT +I+I   
Sbjct: 56  LFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEM-DLNGIEHNMYTMNIMINCF 114

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  +      ++      G E + +T++T+I+G+    +  E  +    MVE     P+
Sbjct: 115 CRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMK-YRPN 173

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT----LNILTKSYGRAGMYDKMR 191
           + T+N++I+     G + +     +     G +A+  T    LN + KS   A   D  R
Sbjct: 174 VVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFR 233

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK------------- 238
                M++R    +VV Y+IVI++  K G+++     F +M+ +G+K             
Sbjct: 234 K----MEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGL 289

Query: 239 ----------------------PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
                                 PN +T+ +L+  + K G +++   +  ++    +  DT
Sbjct: 290 CNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDT 349

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             ++ +I  + +   + +  ++   M  + C P+ +T++ +I +Y        A+ ++N 
Sbjct: 350 ITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYC------KAKRVDNG 403

Query: 337 MIAMKENSGKKLI 349
           M    E S K L+
Sbjct: 404 MRLFCEISSKGLV 416


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 159/330 (48%), Gaps = 3/330 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++L K  +  +A  +   M+S+G+ P   +YT L+  + + G +  A+   ++M+    
Sbjct: 330 ILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQK-RK 388

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD  TY+ +I    +  R    +K+  EM    +E   VTY  +IDGY K  K +E  
Sbjct: 389 ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAF 448

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S  + M++ G   P+I T  ++       G ++   +  +E    G++ +I T N L   
Sbjct: 449 SLHNQMLQMG-LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNG 507

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             +AG  D+   +M  M+   F P  VTY  +++ + K+  + +  E  ++M  R ++P 
Sbjct: 508 LCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPT 567

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T+  L++ +  +G++   + +L+ +    ++ +   +N +I  Y    ++    E++ 
Sbjct: 568 VVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYR 627

Query: 301 TMKERHCVPDNITFATMIQAY-NALGMTEA 329
            M  +  VPD  T+  +I+ +  A  M EA
Sbjct: 628 GMCAKGVVPDGNTYNILIKGHCKARNMKEA 657



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 176/389 (45%), Gaps = 44/389 (11%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +  LG+  +  Q  L  E+    G  P V  Y+ +++ Y Q G L      I +M+ +  
Sbjct: 263 LCQLGRVVEAHQLLLQMELR---GCIPDVISYSTVINGYCQVGELQRVLKLIEEMQ-IKG 318

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA------- 113
            KP+ YTY+ +I    K  +    E++L EM   GI    V Y T+IDG+ K        
Sbjct: 319 LKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAY 378

Query: 114 KKFEEMES--------SFSAMVESGGCH--------------------PDIFTLNSMISA 145
           + F+EM+         +++A++  G C                     PD  T  ++I  
Sbjct: 379 RLFDEMQKRKISPDFITYTAVI-CGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 437

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           Y   G +++    +N+   MG+  +I T   L     + G  D    ++  M ++     
Sbjct: 438 YCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELN 497

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           + TYN ++    KAG+I++  +  K M+  G  P+++TY +L+ AY K+  +++   +LR
Sbjct: 498 IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLR 557

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY---- 321
           Q+ + ++      FN +++ +  +G +E   +L   M E+  +P+  T+ ++I+ Y    
Sbjct: 558 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 617

Query: 322 NALGMTEAAQNLENKMIAMKENSGKKLIQ 350
           N    TE  + +  K +    N+   LI+
Sbjct: 618 NMRATTEIYRGMCAKGVVPDGNTYNILIK 646



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 141/312 (45%), Gaps = 4/312 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C+     +A  LF  M+   L+P    YTAL+  Y + G + EAFS  N M  + 
Sbjct: 399 VICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMG 458

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P++ TY+ L     K    D   ++L EM   G+E +  TYN++++G  KA   ++ 
Sbjct: 459 -LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQA 517

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 M E  G HPD  T  +++ AY  S  + +  +   +     ++  + T N+L  
Sbjct: 518 VKLMKDM-EVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMN 576

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +  +GM +    ++ +M ++   P   TYN +I+ +    ++    E ++ M  +G+ P
Sbjct: 577 GFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVP 636

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  TY  L+  + KA  + +   + R +      L    +N +I  + +     +  ELF
Sbjct: 637 DGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELF 696

Query: 300 LTMKERHCVPDN 311
             M+    V D 
Sbjct: 697 EQMRREGLVADR 708



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 143/347 (41%), Gaps = 38/347 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVD------------------------------------VYTA 34
           ++A  LF+ ML+ GL  SVD                                     Y  
Sbjct: 199 DEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTASYNI 258

Query: 35  LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94
           +  +  Q G + EA   +  M+ +  C PDV +YS +I    +      + K++ EM   
Sbjct: 259 ITHSLCQLGRVVEAHQLLLQME-LRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIK 317

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G++ +  TYN +I    K  K  E E     M+ S G  PD     ++I  +   GN+  
Sbjct: 318 GLKPNPYTYNGVILLLCKTGKVAEAERVLREMI-SEGIAPDGVIYTTLIDGFCKLGNVSS 376

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             + ++E     +  D  T   +     + G   +   +   M  +   P  VTY  +I+
Sbjct: 377 AYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALID 436

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
            + K G +++      +M   G+ PN +TY +L     K G +   + +L ++    + L
Sbjct: 437 GYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLEL 496

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           +   +N +++   +AG++++  +L   M+     PD +T+ T++ AY
Sbjct: 497 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 543



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 132/315 (41%), Gaps = 17/315 (5%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF-----HRFDLIE 85
           V+        ++G+LDEA    + M +        Y   I + SC  F        D I+
Sbjct: 184 VFDIFFQVLVEAGMLDEARKLFDKMLN--------YGLLISVDSCNLFISHLSEDLDGIK 235

Query: 86  ---KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
              K+  E   +G+  +  +YN I     +  +  E       M E  GC PD+ + +++
Sbjct: 236 IALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQM-ELRGCIPDVISYSTV 294

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           I+ Y   G ++++ K   E  + G+K +  T N +     + G   +   V+  M     
Sbjct: 295 INGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGI 354

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P  V Y  +I+ F K G++      F +M+ R + P+ ITY +++    + G +M+ D 
Sbjct: 355 APDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADK 414

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           +  ++    +  D   +  +I  Y + G +++   L   M +    P+ +T+  +     
Sbjct: 415 LFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLC 474

Query: 323 ALGMTEAAQNLENKM 337
             G  + A  L ++M
Sbjct: 475 KCGEVDTANELLHEM 489



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 94/185 (50%)

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           K + EF  +GV  +  + NI+T S  + G   +   ++  M+ R   P V++Y+ VI  +
Sbjct: 239 KVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGY 298

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            + G ++++ +  ++M+ +G+KPN  TY  ++    K G + + + +LR++ +  +  D 
Sbjct: 299 CQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDG 358

Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             +  +I  + + G+V     LF  M++R   PD IT+  +I      G    A  L ++
Sbjct: 359 VIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHE 418

Query: 337 MIAMK 341
           M+  +
Sbjct: 419 MVCKR 423


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 7/350 (2%)

Query: 5   GKCKQPEQA---SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           G CK  + +    L F+  L+ G         AL+    ++G LDEAF    ++     C
Sbjct: 492 GLCKHGKHSKALELWFQ-FLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILG-RGC 549

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
             D  +Y+ LI  C    + D     L EM   G++    TY+ +I G     K EE   
Sbjct: 550 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEE-AI 608

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F    +  G  PD++T + MI     +   E+ +++++E     V+ +    N L ++Y
Sbjct: 609 QFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAY 668

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R+G       + + M+ +   P   TY  +I+       +E+ +  F++M+  G++PN 
Sbjct: 669 CRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNV 728

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             Y +L+  Y K G ++KV+ +LR++ + +V  +   +  +I  Y + G+V +   L   
Sbjct: 729 FHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNE 788

Query: 302 MKERHCVPDNITFATMIQAY-NALGMTEAAQNLENKMIAMKENSGKKLIQ 350
           M+E+  VPD+IT+   I  Y    G+ EA +  + +  A       KLIQ
Sbjct: 789 MREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDEENYAAIIEGWNKLIQ 838



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 126/262 (48%), Gaps = 11/262 (4%)

Query: 43  GLLDEAFSTINDMKSVSDCKPDVYTY---SILIKS-CTKFHRFD--LIEKILAEMSYLGI 96
           GL D   +  + M S+S C  +        +LI+  CT+F R    L   +   ++  G+
Sbjct: 176 GLRDSRVAIADAMASLSLCFDEEIRRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGM 235

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
             S  T N ++    +A +F++   +F  + +  G  PD++   + I+A+   G +E+  
Sbjct: 236 FPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--GVSPDVYLFTTAINAFCKGGKVEEAV 293

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           K +++    GV  ++ T N +    G  G YD+     + M +R   PT++TY+I+++  
Sbjct: 294 KLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGL 353

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            +A  I       K+M  +G  PN I Y +L+ ++ +AG + K   I   + +  + L +
Sbjct: 354 TRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTS 413

Query: 277 PFFNCIISAY---GQAGDVEKM 295
             +N +I  Y   GQA + E++
Sbjct: 414 STYNTLIKGYCKNGQADNAERL 435



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 138/346 (39%), Gaps = 50/346 (14%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLD---EAFSTINDMKSVSDCKPDVYTYSILI 72
           +F V+ + G+ PS      L+++  ++       EAF  +   K VS   PDVY ++  I
Sbjct: 226 VFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV--CKGVS---PDVYLFTTAI 280

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
            +  K  + +   K+ ++M   G+  + VT+NT+IDG G   +++E       MVE G  
Sbjct: 281 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERG-M 339

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            P + T + ++     +  I        E    G   ++   N L  S+  AG  +K   
Sbjct: 340 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 399

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM-------------------- 232
           + D M  +    T  TYN +I+ + K G  +  E   K+M                    
Sbjct: 400 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 459

Query: 233 KH---------------RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
            H               R M P      +L+S   K G   K   +  Q  N   ++DT 
Sbjct: 460 SHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR 519

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKE---RHCVPDNITFATMIQA 320
             N ++    +AG   K+ E F   KE   R CV D +++ T+I  
Sbjct: 520 TSNALLHGLCEAG---KLDEAFRIQKEILGRGCVMDRVSYNTLISG 562



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 138/325 (42%), Gaps = 9/325 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LF  M   G+ P+V  +  ++   G  G  DEAF     M      +P + TYSI
Sbjct: 290 EEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE-RGMEPTLITYSI 348

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+K  T+  R      +L EM+  G   + + YN +ID + +A    +       MV S 
Sbjct: 349 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV-SK 407

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G      T N++I  Y  +G  +  E+   E   +G   +  +   +        M+D  
Sbjct: 408 GLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSA 467

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              +  M  R   P       +I    K G   K  E + +  ++G   ++ T  +L+  
Sbjct: 468 LRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHG 527

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE---RHC 307
             +AG + +   I +++     ++D   +N +IS  G  G  +K+ E F+ + E   R  
Sbjct: 528 LCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS--GCCGK-KKLDEAFMFLDEMVKRGL 584

Query: 308 VPDNITFATMIQA-YNALGMTEAAQ 331
            PDN T++ +I   +N   + EA Q
Sbjct: 585 KPDNYTYSILICGLFNMNKVEEAIQ 609



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 153/383 (39%), Gaps = 51/383 (13%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + K+   A  + + M   G  P+V VY  L+ ++ ++G L++A   I D+        
Sbjct: 353 LTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE-IKDLMVSKGLSL 411

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM---- 119
              TY+ LIK   K  + D  E++L EM  +G   +  ++ ++I        F+      
Sbjct: 412 TSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFV 471

Query: 120 -ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNEFNLMGVKADIQTLNIL 177
            E     M   GG       L ++IS     G   K +E W+   N  G   D +T N L
Sbjct: 472 GEMLLRNMSPGGG------LLTTLISGLCKHGKHSKALELWFQFLN-KGFVVDTRTSNAL 524

Query: 178 TKSYGRAGMYDKMRSV-----------------------------------MDFMQKRFF 202
                 AG  D+   +                                   +D M KR  
Sbjct: 525 LHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGL 584

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P   TY+I+I        +E+  +++   K  GM P+  TY  ++    KA    +   
Sbjct: 585 KPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQE 644

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
              ++ + +V  +T  +N +I AY ++G +    EL   MK +   P++ T+ ++I+  +
Sbjct: 645 FFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMS 704

Query: 323 ALGMTEAAQNL--ENKMIAMKEN 343
            +   E A+ L  E +M  ++ N
Sbjct: 705 IISRVEEAKLLFEEMRMEGLEPN 727


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 168/375 (44%), Gaps = 54/375 (14%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           + MLGK K+ E      E M S GLKP    Y  +++A  + G   +A   +N MK  S 
Sbjct: 569 LCMLGKSKEAES---FLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKR-SS 624

Query: 61  CKPDVYTYSILI-----------------------------------KSCTKFHRFDLIE 85
            KP++ TYS LI                                   ++C++  R DLI 
Sbjct: 625 IKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLIL 684

Query: 86  KILAEMSYLGIECSAVTYNTIIDGY---GKAKK----FEEMESSFSAMVESGGCHPDIFT 138
           +I   M   G+      YNT++      G  +K     EEM           G  PD  T
Sbjct: 685 EIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGR--------GIAPDTIT 736

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
            N++I  +  SG+++     Y++    G+  ++ T N L      AG   +   V++ M+
Sbjct: 737 FNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMK 796

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
           KR   P+ +TY+I++  +GK  +  +    + +M  +G  P   TY +L+S +SK G++ 
Sbjct: 797 KRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMS 856

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +   +  +++N  V+  +  ++ ++S + +  +  ++ +    MKE+   P   T +++ 
Sbjct: 857 QAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSIS 916

Query: 319 QAYNALGMTEAAQNL 333
           +A++  GM+  A+ L
Sbjct: 917 RAFSKPGMSWEARRL 931



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 148/318 (46%), Gaps = 8/318 (2%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDCK 62
           CK+   ++A  +F   LSD   P+   YT L+ A  ++G +D A   +++M  KS+S   
Sbjct: 360 CKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSIS--- 416

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V T+S +I    K          + EM   GI+ + VTY T+IDG  K    E     
Sbjct: 417 PNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDV 476

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +  M+   G   + F ++S+++    +G IEK E  + E N  GV  D      L     
Sbjct: 477 YHEML-CEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLF 535

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G       V   + ++   P  V YN+ I      G  ++ E + ++M+  G+KP+ +
Sbjct: 536 KTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQV 595

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY ++++A S+ G   K   +L  ++ S +  +   ++ +I    +AG VEK   L   M
Sbjct: 596 TYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEM 655

Query: 303 KERHCVPDNITFATMIQA 320
                 P ++T   ++QA
Sbjct: 656 SSSGFSPTSLTHRRVLQA 673



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 162/342 (47%), Gaps = 8/342 (2%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDV--YTALVSAYGQSGLLDEAFSTINDMKS 57
           V++G C+  + ++A+ L EVM+  G    +DV  + +LV  Y + G ++ AF+    MK+
Sbjct: 143 VLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKA 202

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
                 DV  Y+ L+    +    D    ++  M   G+E + VTY   I  Y +    +
Sbjct: 203 -QGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVD 261

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           +  S +  MV  G   PD+ TL++++      G   +    + E   +G   +  T  +L
Sbjct: 262 DAFSLYEEMVRKG-VLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCML 320

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
             +  +A   ++  S++  +  R     ++ Y  +++   K G I++ ++ F+       
Sbjct: 321 IDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNH 380

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            PN +TY  L+ A  KAG +   + +L ++E   +  +   F+ II+   + G V K  +
Sbjct: 381 TPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATD 440

Query: 298 LFLTMKERHCVPDNITFATMIQ-AYNALGMTEAAQNLENKMI 338
               MKER   P+ +T+ T+I  ++  LG  EAA ++ ++M+
Sbjct: 441 YMREMKERGIDPNVVTYGTVIDGSFKCLGQ-EAALDVYHEML 481



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 5/268 (1%)

Query: 3   MLGKCKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +L  C Q  ++ L+ E+   M++ GL   + VY  LV     +G+  +A   + +M S  
Sbjct: 670 VLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEM-SGR 728

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD  T++ LI    K    D       +M Y GI  +  T+NT++ G   A +  E 
Sbjct: 729 GIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGES 788

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           +   + M +  G  P   T + +++ YG   N  +  + Y E    G    + T N L  
Sbjct: 789 DMVLNEM-KKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALIS 847

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + + GM  + + + + MQ R   PT  TY+I++  + K  +  ++ ++ K MK +G  P
Sbjct: 848 DFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSP 907

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQV 267
           +  T  S+  A+SK G+  +   +L+ +
Sbjct: 908 SKGTLSSISRAFSKPGMSWEARRLLKNL 935



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 146/322 (45%), Gaps = 2/322 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L+E M+  G+ P V   +ALV    + G   EA++   +M+ +    P+  TY +LI + 
Sbjct: 266 LYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIG-AAPNHVTYCMLIDTL 324

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  R +    +L E+   G+    + Y  ++D   K  K +E +  F   + S    P+
Sbjct: 325 AKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHAL-SDNHTPN 383

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T   +I A   +GN++  E+  +E     +  ++ T + +     + G   K    M 
Sbjct: 384 GVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMR 443

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M++R   P VVTY  VI+   K    E   + + +M   G++ N     SLV+   K G
Sbjct: 444 EMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNG 503

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I K +++ R++    V+LD   +  +I    + G++    ++   + E++ +PD + + 
Sbjct: 504 KIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYN 563

Query: 316 TMIQAYNALGMTEAAQNLENKM 337
             I     LG ++ A++   +M
Sbjct: 564 VFINCLCMLGKSKEAESFLEEM 585



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 120/289 (41%), Gaps = 36/289 (12%)

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFTLNSMI 143
           E +LAEM   G+   AVT NT++ G  +  + +   +    MV  GG    D+   NS++
Sbjct: 122 EALLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLV 181

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             Y   G++E            GV  D+   N L     RAG  D  R ++D M++    
Sbjct: 182 DGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVE 241

Query: 204 PTVVTY----------NIVIETFG-------------------------KAGHIEKMEEY 228
           P VVTY          N V + F                          K G   +    
Sbjct: 242 PNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYAL 301

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           F++M+  G  PN +TYC L+   +KA    +  S+L +V +  V++D   +  ++    +
Sbjct: 302 FREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCK 361

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            G +++  ++F      +  P+ +T+  +I A    G  + A+ + ++M
Sbjct: 362 EGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEM 410



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 133/318 (41%), Gaps = 2/318 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E+A  LF  M   G+      YT L+    ++G L  AF    ++    +  P
Sbjct: 499 LKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTE-KNLLP 557

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D   Y++ I       +    E  L EM   G++   VTYNT+I    +  K  +     
Sbjct: 558 DAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLL 617

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + M  S    P++ T +++I     +G +EK +   NE +  G      T   + ++  +
Sbjct: 618 NGMKRSS-IKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQ 676

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
               D +  + ++M        +  YN ++      G   K     ++M  RG+ P++IT
Sbjct: 677 GRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTIT 736

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +L+  + K+G +    S   Q+    +  +   FN ++     AG + +   +   MK
Sbjct: 737 FNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMK 796

Query: 304 ERHCVPDNITFATMIQAY 321
           +R   P N+T+  ++  Y
Sbjct: 797 KRGIEPSNLTYDILVTGY 814


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 159/330 (48%), Gaps = 3/330 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++L K  +  +A  +   M+S+G+ P   +YT L+  + + G +  A+   ++M+    
Sbjct: 230 ILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQK-RK 288

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD  TY+ +I    +  R    +K+  EM    +E   VTY  +IDGY K  K +E  
Sbjct: 289 ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAF 348

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S  + M++ G   P+I T  ++       G ++   +  +E    G++ +I T N L   
Sbjct: 349 SLHNQMLQMG-LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNG 407

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
             +AG  D+   +M  M+   F P  VTY  +++ + K+  + +  E  ++M  R ++P 
Sbjct: 408 LCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPT 467

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            +T+  L++ +  +G++   + +L+ +    ++ +   +N +I  Y    ++    E++ 
Sbjct: 468 VVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYR 527

Query: 301 TMKERHCVPDNITFATMIQAY-NALGMTEA 329
            M  +  VPD  T+  +I+ +  A  M EA
Sbjct: 528 GMCAKGVVPDGNTYNILIKGHCKARNMKEA 557



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 141/311 (45%), Gaps = 4/311 (1%)

Query: 2   VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C+     +A  LF  M+   L+P    YTAL+  Y + G + EAFS  N M  + 
Sbjct: 299 VICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMG 358

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P++ TY+ L     K    D   ++L EM   G+E +  TYN++++G  KA   ++ 
Sbjct: 359 -LTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQA 417

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 M E  G HPD  T  +++ AY  S  + +  +   +     ++  + T N+L  
Sbjct: 418 VKLMKDM-EVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMN 476

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +  +GM +    ++ +M ++   P   TYN +I+ +    ++    E ++ M  +G+ P
Sbjct: 477 GFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVP 536

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  TY  L+  + KA  + +   + R +      L    +N +I  + +     +  ELF
Sbjct: 537 DGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELF 596

Query: 300 LTMKERHCVPD 310
             M+    V D
Sbjct: 597 EQMRREGLVAD 607



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 142/306 (46%), Gaps = 2/306 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L E M   GLKP+   Y  ++    ++G + EA   + +M S     PD   Y+ LI   
Sbjct: 210 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMIS-EGIAPDGVIYTTLIDGF 268

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K        ++  EM    I    +TY  +I G  +  +  E +  F  MV      PD
Sbjct: 269 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV-CKRLEPD 327

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T  ++I  Y   G +++    +N+   MG+  +I T   L     + G  D    ++ 
Sbjct: 328 EVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLH 387

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M ++     + TYN ++    KAG+I++  +  K M+  G  P+++TY +L+ AY K+ 
Sbjct: 388 EMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSR 447

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +++   +LRQ+ + ++      FN +++ +  +G +E   +L   M E+  +P+  T+ 
Sbjct: 448 EMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYN 507

Query: 316 TMIQAY 321
           ++I+ Y
Sbjct: 508 SLIKQY 513


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 159/348 (45%), Gaps = 19/348 (5%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTI----NDMKSVSDC 61
           K ++  +A+ +FE+MLS+G  P++  YTAL+  + ++G  ++A        ND   + D 
Sbjct: 204 KTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDV 263

Query: 62  ------------KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109
                       +P+V TY  L+    K H+      +L  MS  G E + + Y+ +IDG
Sbjct: 264 DIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDG 323

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           + K  K +E +  F+ M+   GC P+++T +S+I        ++   K   +        
Sbjct: 324 FCKVGKLDEAQEVFTKML-GHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAP 382

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           ++     +     + G  D+   +M  M+++  +P VVTY  +I+ FGKAG +++  E  
Sbjct: 383 NVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELL 442

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           + M  +G  PN ITY  L++    AGL+     +L +++ +        +  +I  +   
Sbjct: 443 QLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHE 502

Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             V  +G L   + E   VP    +  +I  +   G  E A  L  ++
Sbjct: 503 F-VASLG-LLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEEL 548



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 155/349 (44%), Gaps = 37/349 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  +   M+S G  P    Y+ ++     +  +++AF    +MK  +   PDVYTY+ 
Sbjct: 104 EKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKR-NGITPDVYTYTT 162

Query: 71  LIKSCTKFHRFDLIEKI---LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           L+    +F +  LIE+      EM   G   + VTY  +I  Y K +K       F  M+
Sbjct: 163 LLD---RFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMML 219

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK-------- 179
            S GC P+I T  ++I  +  +G  EK  + Y        K DI  ++I  +        
Sbjct: 220 -SNGCVPNIVTYTALIDGHCKAGETEKACQIYARMK--NDKVDIPDVDIYFRIVDSELKE 276

Query: 180 ----SYG-------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228
               +YG       +A    + R +++ M      P  + Y+ +I+ F K G +++ +E 
Sbjct: 277 PNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEV 336

Query: 229 FKKMKHRGMKPNSITYCSLVSA-YSKAGLIMKVDSILRQVENS---DVILDTPFFNCIIS 284
           F KM   G  PN  TY SL+   +    L + +  + + +ENS   +V++ T     ++ 
Sbjct: 337 FTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTE----MVD 392

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
              + G  ++   L L M+E+ C P+ +T+  MI  +   G  +    L
Sbjct: 393 GLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLEL 441



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 150/343 (43%), Gaps = 17/343 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LF+ M  +G+ P V  YT L+  + + GL+++A +  ++M+    C P+V TY+ 
Sbjct: 139 EKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQ-DGCAPNVVTYTA 197

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM---- 126
           LI +  K  +     +I   M   G   + VTY  +IDG+ KA + E+    ++ M    
Sbjct: 198 LIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDK 257

Query: 127 ------------VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
                       V+S    P++ T  +++     +  +++        +L G + +    
Sbjct: 258 VDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIY 317

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           + L   + + G  D+ + V   M      P V TY+ +I+   K   ++   +   KM  
Sbjct: 318 DALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLE 377

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
               PN + Y  +V    K G   +   ++  +E      +   +  +I  +G+AG V++
Sbjct: 378 NSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDR 437

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             EL   M  + C P+ IT+  +I    A G+ + A  L  +M
Sbjct: 438 CLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEM 480



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 152/344 (44%), Gaps = 25/344 (7%)

Query: 19  VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78
           +M+++G  PS  ++ +LV AY +SG    A+  +  M  +   +P    Y+ILI      
Sbjct: 1   MMITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKM-VICGYQPGYVVYNILIGGICST 59

Query: 79  HRFDLIEKI-LAEMSY-----LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                +E I LAE +Y     +G+  + V             KFE+  +    M+ S G 
Sbjct: 60  EDLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMM-SKGF 118

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PD  T + +I    N+  +EK  + + E    G+  D+ T   L   + + G+ ++ R+
Sbjct: 119 IPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARN 178

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
             D MQ+    P VVTY  +I  + K   + +  E F+ M   G  PN +TY +L+  + 
Sbjct: 179 WFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHC 238

Query: 253 KAGLIMKVDSILRQVENSDV----------ILDTPFFNCIISAYG-------QAGDVEKM 295
           KAG   K   I  +++N  V          I+D+      +  YG       +A  V++ 
Sbjct: 239 KAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEA 298

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +L  TM    C P+ I +  +I  +  +G  + AQ +  KM+ 
Sbjct: 299 RDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLG 342



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 148/342 (43%), Gaps = 15/342 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + ++A  L E M  +G +P+  +Y AL+  + + G LDEA      M     C P
Sbjct: 289 LCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLG-HGCSP 347

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +VYTYS LI    K  R DL  K+L +M       + V Y  ++DG  K  K +E     
Sbjct: 348 NVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDE-AYRL 406

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+E  GC+P++ T  +MI  +G +G +++  +        G   +  T  +L      
Sbjct: 407 MLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCA 466

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF-----GKAGHIEKMEEYFKKMKHRGMK 238
           AG+ D    +++ M++ ++   +  Y  VIE F        G + ++ E        G  
Sbjct: 467 AGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSE-------DGSV 519

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P    Y  L+  + KAG +     +  ++ +        + + +I +   A  V+K  +L
Sbjct: 520 PILPVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQNTYVS-LIESLTLACKVDKAFKL 578

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           +  M  R  VP+      +I+    +G  E A  L + +  M
Sbjct: 579 YSDMTRRGFVPELSMLVCLIKGLLRVGKWEEALQLSDSICQM 620


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 160/357 (44%), Gaps = 35/357 (9%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           ++ VM+   ++P++  +  ++ +  + G +  A   ++ M+    C P+  +Y++L+   
Sbjct: 194 VYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFG-CDPNDVSYNVLVNGL 252

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG---- 131
           +    FD  ++++ +MS LG++ SA TYN +I G+ K + FEE       M+  G     
Sbjct: 253 SGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTV 312

Query: 132 ----------CH--------------------PDIFTLNSMISAYGNSGNIEKMEKWYNE 161
                     C                     PD+ + N++I  Y   GN  +    ++E
Sbjct: 313 VTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSE 372

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
                +   + T N L     R G  D  + + D M K    P VVT+ I++  F + G+
Sbjct: 373 LRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGN 432

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           +   +E F +M  RG+KP+ I Y + +    K G   K   +  +++      D   +N 
Sbjct: 433 LPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNV 492

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +I+   + G+ +   EL   M+    VPD++T+ ++I A+   G+   A+ + + M+
Sbjct: 493 LINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDML 549



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 159/338 (47%), Gaps = 16/338 (4%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A LLF  + S  L PSV  Y  L+    ++G LD A    +DM     C PDV T++IL
Sbjct: 365 EALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLC-PDVVTFTIL 423

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKF---EEMESSFS 124
           ++   +     + +++  EM   G++   + Y T I G  K    +K F   EEM++   
Sbjct: 424 VRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAE-- 481

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
                 G  PD+ T N +I+     GN +   +   +  L G+  D  T   +  ++  +
Sbjct: 482 ------GFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLIS 535

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G+  K   V   M K+   P+VVTY ++I ++   G ++  ++YF +M+ +G+ PN ITY
Sbjct: 536 GLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITY 595

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +L+    K  ++    ++  ++E+  V  +   +  +I+        +   +L+  M +
Sbjct: 596 NALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLD 655

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
           R   PD+ T + +++  +      A   LEN  +A+ E
Sbjct: 656 REIKPDSCTHSALMKHLSKDYKLLAVLRLENLPLAIVE 693



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/312 (19%), Positives = 143/312 (45%), Gaps = 2/312 (0%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           SV +   L+  + +  +L++       M + +   PDV   + ++K        + +E++
Sbjct: 136 SVKLLDLLIQVFAKKLILEKCLMVFYKMVN-NGLLPDVRNCNRVLKLLKDKSMVNEVEEV 194

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
            + M    I  + VT+NT++D   K  +          M    GC P+  + N +++   
Sbjct: 195 YSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVM-RMFGCDPNDVSYNVLVNGLS 253

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
             G  ++ ++   + +++G+K    T N L + + +  M+++   +   M  R   PTVV
Sbjct: 254 GKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVV 313

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TYN ++ +  + G +     Y   M +  + P+ ++Y +L+  YS+ G   +   +  ++
Sbjct: 314 TYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSEL 373

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
            + +++     +N +I    + G+++    +   M +    PD +TF  +++ +  +G  
Sbjct: 374 RSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNL 433

Query: 328 EAAQNLENKMIA 339
             A+ L ++M++
Sbjct: 434 PMAKELFDEMLS 445


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 154/335 (45%), Gaps = 5/335 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK ++     +  E     G  P V  YT ++  Y   G L +    + +M+ +   KP
Sbjct: 123 LGKIREAHHLLMRMEF---KGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQ-LKGLKP 178

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++YTYS +I    K  +    EK+L EM   G+    V Y T+IDG+ K    +     F
Sbjct: 179 NLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLF 238

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           S M E+    PD    +++I     SG + + +K +NE    G + D  T   L   Y +
Sbjct: 239 SEM-EAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCK 297

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   K   + + M +    P VVTY  + +   K+G ++   E   +M  +G++ N  T
Sbjct: 298 LGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNIST 357

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y ++V+   KAG I++   ++ +++ + +  DT  +  ++ AY + G++ K  EL   M 
Sbjct: 358 YNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREML 417

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +R   P  +TF  ++      G  E  + L   M+
Sbjct: 418 DRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWML 452



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 137/297 (46%), Gaps = 2/297 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  M+  G +P    YTAL+  Y + G + +AF   N M  +    P+V TY+ L
Sbjct: 268 EADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIG-LTPNVVTYTAL 326

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
                K    D   ++L EM   G++ +  TYNTI++G  KA    +       M E+G 
Sbjct: 327 ADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAG- 385

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
            HPD  T  +++ AY  +G + K  +   E    G++  + T N+L      +G  +   
Sbjct: 386 LHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGE 445

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++ +M ++   P   TYN +++ +    ++    E ++ M  +G+ P+S TY  L+  +
Sbjct: 446 RLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGH 505

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
            KA  + +   + +++      L    +N +I  + +   + +  +LF  M+    V
Sbjct: 506 CKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLV 562



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 158/333 (47%), Gaps = 9/333 (2%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++L K  +  +   +   M+  G+ P   +YT L+  + + G    A+   ++M++  +
Sbjct: 187 ILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEA-RE 245

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PD   +S LI   +   +    +K+  EM   G E   VTY  +IDGY K     EM+
Sbjct: 246 IVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCK---LGEMK 302

Query: 121 SSF---SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
            +F   + MV+ G   P++ T  ++      SG ++   +  +E    G++ +I T N +
Sbjct: 303 KAFFLHNQMVQIG-LTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTI 361

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
                +AG   +   +M+ M++    P  +TY  +++ + K G + K  E  ++M  RG+
Sbjct: 362 VNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGL 421

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           +P  +T+  L++    +G +   + +L+ +    ++ +   +N I+  Y    ++    E
Sbjct: 422 QPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTE 481

Query: 298 LFLTMKERHCVPDNITFATMIQAY-NALGMTEA 329
           ++  M  +  VPD+ T+  +I+ +  A  M EA
Sbjct: 482 IYRGMCAQGVVPDSNTYNILIKGHCKARNMKEA 514



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 126/260 (48%), Gaps = 22/260 (8%)

Query: 79  HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138
           H FD+  ++L E   L                 +A+KF +   ++   + +G C+  +  
Sbjct: 40  HVFDVFFQVLVEAGLLN----------------EARKFFDKLLNYGVALSAGSCNLYLTC 83

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
           L+S     G       + K ++EF  +GV  + ++ NIL  S  R G   +   ++  M+
Sbjct: 84  LSSKRDMLG------MVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRME 137

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
            +   P VV+Y  +I+ +   G ++K+ +  K+M+ +G+KPN  TY S++    K+G ++
Sbjct: 138 FKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVV 197

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           + + +LR++    V  D   +  +I  + + G+ +   +LF  M+ R  VPD+I F+ +I
Sbjct: 198 EGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALI 257

Query: 319 QAYNALGMTEAAQNLENKMI 338
              +  G    A  L N+MI
Sbjct: 258 CGLSGSGKVVEADKLFNEMI 277



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 141/315 (44%), Gaps = 17/315 (5%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC--------TKFHRFD 82
           V+        ++GLL+EA    + + +        Y  ++   SC        +K     
Sbjct: 41  VFDVFFQVLVEAGLLNEARKFFDKLLN--------YGVALSAGSCNLYLTCLSSKRDMLG 92

Query: 83  LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
           ++ K+ +E   LG+  +  +YN +++   +  K  E       M E  GC PD+ +  ++
Sbjct: 93  MVLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRM-EFKGCIPDVVSYTTI 151

Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
           I  Y + G ++K+ +   E  L G+K ++ T + +     ++G   +   V+  M KR  
Sbjct: 152 IDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGV 211

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
           FP  V Y  +I+ F K G+ +   + F +M+ R + P+SI + +L+   S +G +++ D 
Sbjct: 212 FPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADK 271

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           +  ++       D   +  +I  Y + G+++K   L   M +    P+ +T+  +     
Sbjct: 272 LFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLC 331

Query: 323 ALGMTEAAQNLENKM 337
             G  + A  L ++M
Sbjct: 332 KSGELDTANELLHEM 346


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 151/319 (47%), Gaps = 7/319 (2%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E+A  + EV     L P++ V+ + +S     G + +A     DM  +    
Sbjct: 300 GYCKVGKSEEAMDVLEVF---NLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMG-LI 355

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD ++Y+ ++    K        K L +M   GI  S  TY  +ID   K    E  E  
Sbjct: 356 PDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYL 415

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M+ + G  PD+ + N++++ YG  G+++K  +  +     GV  D+ T NIL     
Sbjct: 416 FQRMI-TEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLI 474

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G+ ++ + ++D + +R F P VVT+  +I  F   G+ E+    F  M    ++P+ +
Sbjct: 475 KRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVV 534

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T  +L++ Y +   + + + +  ++ ++ +  D   +N +I  +   G+++    L   M
Sbjct: 535 TCSALLNGYCRTRCMAEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMM 594

Query: 303 KERHCVPDNITFATMIQAY 321
            E   +P+NIT   ++  Y
Sbjct: 595 IEHGIMPNNITHHALVLGY 613



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 156/325 (48%), Gaps = 8/325 (2%)

Query: 9   QPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + EQ +L ++    M S GL  +  + +  +S Y   G +D  +  + +MK +   KPDV
Sbjct: 198 ESEQLNLAWDFLKEMKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLG-IKPDV 256

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             Y+I+I S  K         IL +M+ +G+   +V+ ++++DGY K  K EE       
Sbjct: 257 VAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMD---- 312

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           ++E     P+IF  NS IS     GN+ K  K + +   MG+  D  +   +   Y +  
Sbjct: 313 VLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVK 372

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
                   +  M KR   P+V TY ++I++  K G++E  E  F++M   G+ P+ ++Y 
Sbjct: 373 DISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYN 432

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +L++ Y K G + K   +L  + ++ V  D   +N +I    + G V +  ++   +  R
Sbjct: 433 TLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRR 492

Query: 306 HCVPDNITFATMIQAYNALGMTEAA 330
              PD +TF  +I  ++  G  E A
Sbjct: 493 GFSPDVVTFTNIIGGFSNKGNFEEA 517



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 40/255 (15%)

Query: 2   VMLGKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++  C +P   E A  LF+ M+++GL P V  Y  L++ YG+ G L +AF  ++ M+S 
Sbjct: 398 LLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRS- 456

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +   PD+ TY+ILI    K    +  + IL E++  G     VT+  II G+     FEE
Sbjct: 457 AGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKGNFEE 516

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  M E     PD+ T +++++ Y  +  + +    +++    G+KAD        
Sbjct: 517 AFLLFFYMSEHH-LEPDVVTCSALLNGYCRTRCMAEANVLFHKMLDAGLKAD-------- 567

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                                      V+ YN +I  F   G+I+        M   G+ 
Sbjct: 568 ---------------------------VILYNSLIHGFCSLGNIDDACHLVSMMIEHGIM 600

Query: 239 PNSITYCSLVSAYSK 253
           PN+IT+ +LV  Y K
Sbjct: 601 PNNITHHALVLGYEK 615



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 60/339 (17%), Positives = 126/339 (37%), Gaps = 70/339 (20%)

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
            Y +L+    K +   +  K++ +M +L I       N+++    ++++          M
Sbjct: 153 VYGMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEM 212

Query: 127 VESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
              G G +  I +L   IS Y + GNI+   K   E   +G+K D+    I+  S  +  
Sbjct: 213 KSQGLGLNASIISL--FISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMS 270

Query: 186 MYDKMRSV--------------------------------MDFMQKRFFFPTVVTYNIVI 213
           +  +  S+                                MD ++     P +  +N  I
Sbjct: 271 LLKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVFNLSPNIFVFNSFI 330

Query: 214 ETFGKAGHIEKMEEYFK-----------------------------------KMKHRGMK 238
                 G++ K  + F+                                   KM  RG++
Sbjct: 331 SKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIR 390

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+  TY  L+ +  K G +   + + +++    ++ D   +N +++ YG+ G ++K  EL
Sbjct: 391 PSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFEL 450

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              M+     PD +T+  +I      G+   A+++ +++
Sbjct: 451 LSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDEL 489



 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 78/176 (44%), Gaps = 2/176 (1%)

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
           M  KA    L++++ + G  G ++    + +   KR    TV  Y +++  + K    + 
Sbjct: 112 MNHKAMDLLLHLISYNSGEEGWHNIFLKIHETHTKRRVLETV--YGMLVNCYVKENMTQV 169

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
             +   KM+H  + P      SL+ A  ++  +      L+++++  + L+    +  IS
Sbjct: 170 ALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEMKSQGLGLNASIISLFIS 229

Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            Y   G+++   +L + MK     PD + +  +I +   + + + A ++  KM  M
Sbjct: 230 GYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQM 285


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 129/256 (50%), Gaps = 2/256 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A+ L   M+  G++P+V  +TAL+ A+ + G + EA      M  +S   PDV+TY+ LI
Sbjct: 241 AAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMS-VYPDVFTYTALI 299

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                + R D   ++   M   G   + VTY T+I G+ K+K+ E+    F  M + G  
Sbjct: 300 NGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLV 359

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
              I T   +I  Y   G  +  ++ +N+        DI+T N+L       G  +K   
Sbjct: 360 ANTI-TYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALM 418

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           +  +M+KR     +VTY I+I+   K G +E   + F  +  +GMKPN ITY +++S + 
Sbjct: 419 IFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFC 478

Query: 253 KAGLIMKVDSILRQVE 268
           + G I + D++ ++++
Sbjct: 479 RRGFIHEADALFKKMK 494



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 153/335 (45%), Gaps = 4/335 (1%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +VM   C+  QP +AS     M+  G +P +  +T+L+  +     +++A +  + +  +
Sbjct: 122 IVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGM 181

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              +P+V TY+ LI    K    +   +I  +M   GI  + VTYN+++ G  +  ++ +
Sbjct: 182 G-FRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSD 240

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  M++ G   P++ T  ++I A+   G I + ++ Y     M V  D+ T   L 
Sbjct: 241 AAWLLRDMMKRG-IQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALI 299

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                 G  D+ R +   M+   ++P  VTY  +I  F K+  +E   + F +M  +G+ 
Sbjct: 300 NGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLV 359

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            N+ITY  L+  Y   G       +  Q+ +     D   +N ++      G VEK   +
Sbjct: 360 ANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMI 419

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           F  M++R    + +T+  +IQ    +G  E A +L
Sbjct: 420 FKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDL 454



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 146/327 (44%), Gaps = 2/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  LF+ ++  G +P+V  YT L+    ++  L+ A    N M   +  +P+V TY+ 
Sbjct: 169 EDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGD-NGIRPNVVTYNS 227

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    +  R+     +L +M   GI+ + +T+  +ID + K  K  E +  +  M++  
Sbjct: 228 LVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMS 287

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
             +PD+FT  ++I+     G +++  + +      G   +  T   L   + ++   +  
Sbjct: 288 -VYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDG 346

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M ++      +TY ++I+ +   G  +  +E F +M  R   P+  TY  L+  
Sbjct: 347 TKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDG 406

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G + K   I + +   ++ ++   +  II    + G VE   +LF ++  +   P+
Sbjct: 407 LCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPN 466

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            IT+ TMI  +   G    A  L  KM
Sbjct: 467 VITYTTMISGFCRRGFIHEADALFKKM 493



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 150/329 (45%), Gaps = 2/329 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q  +A  LF  M+     PS+  +T L+S   +    D   S    M+ +    P +YT 
Sbjct: 62  QFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQ-ILGISPVLYTC 120

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I++    +  +       L +M  LG E   VT+ +++ G+    + E+  + F  +V 
Sbjct: 121 NIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIV- 179

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             G  P++ T  ++I     + ++    + +N+    G++ ++ T N L       G + 
Sbjct: 180 GMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWS 239

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
               ++  M KR   P V+T+  +I+ F K G I + +E +K M    + P+  TY +L+
Sbjct: 240 DAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALI 299

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
           +     G + +   +   +E++    +   +  +I  + ++  VE   ++F  M ++  V
Sbjct: 300 NGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLV 359

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKM 337
            + IT+  +IQ Y  +G  + AQ + N+M
Sbjct: 360 ANTITYTVLIQGYCLVGRPDVAQEVFNQM 388



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 1/226 (0%)

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           +F E    F+ MV S    P I     ++S        + +   + +  ++G+   + T 
Sbjct: 62  QFNEALDLFTRMVHSRPL-PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTC 120

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           NI+     R+    +    +  M K  F P +VT+  ++  F     IE     F ++  
Sbjct: 121 NIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVG 180

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G +PN +TY +L+    K   +     I  Q+ ++ +  +   +N ++S   + G    
Sbjct: 181 MGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSD 240

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
              L   M +R   P+ ITF  +I A+  +G    A+ L   MI M
Sbjct: 241 AAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQM 286


>gi|255561941|ref|XP_002521979.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538783|gb|EEF40383.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 496

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 11/344 (3%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  Q  +A+ + ++M+  G  P V  Y  +V    + G L  A   + DM S+S C PDV
Sbjct: 145 KVDQINKAARILKIMVMSGGVPDVITYNMMVGGLCKRGKLKSAIDLLEDM-SLSGCPPDV 203

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFS 124
            TY+ +I+       FD   +   E    G     +TY  +I+   K       ME    
Sbjct: 204 VTYNTIIRCMFHNANFDQAVRFWKEQLRRGCPPYLITYTILIELVCKHCGTVRAMEVLED 263

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
             +E  GC+PD+ T NS+++     G  E            G++ +  T N L  S    
Sbjct: 264 MAIE--GCYPDLVTYNSLVNFTCKQGKYEDAALIIINMLSHGMEPNAITYNTLLHSLCSC 321

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G++D++  ++  M++    PTVVTYN +I    K+G + +  ++F +M +    P+ +TY
Sbjct: 322 GLWDEVDEILTVMKETSHPPTVVTYNTLINGLCKSGLVNRAIDFFHQMVYENCLPDIVTY 381

Query: 245 CSLVSAYSKAGLIMKVDS-------ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            +L+ A  K    M   S       ILR++   D  +++  +  +I         +   +
Sbjct: 382 NTLLGALCKEECWMSPSSQFEDAVEILREMGKRDHRINSYAYRSVIDGLCNNKKTDIAIQ 441

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +   M    C PD   ++ +I +    GM E A  L  K+I +K
Sbjct: 442 VLEIMISSRCKPDEEIYSALINSLADAGMMEEANELRQKLINIK 485



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 118/258 (45%), Gaps = 1/258 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+    + LI+   K  + +   +IL  M   G     +TYN ++ G  K  K +     
Sbjct: 131 PNFSCCTNLIRGFIKVDQINKAARILKIMVMSGGVPDVITYNMMVGGLCKRGKLKSAIDL 190

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M  SG C PD+ T N++I    ++ N ++  +++ E    G    + T  IL +   
Sbjct: 191 LEDMSLSG-CPPDVVTYNTIIRCMFHNANFDQAVRFWKEQLRRGCPPYLITYTILIELVC 249

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +     +   V++ M     +P +VTYN ++    K G  E        M   GM+PN+I
Sbjct: 250 KHCGTVRAMEVLEDMAIEGCYPDLVTYNSLVNFTCKQGKYEDAALIIINMLSHGMEPNAI 309

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+ +    GL  +VD IL  ++ +        +N +I+   ++G V +  + F  M
Sbjct: 310 TYNTLLHSLCSCGLWDEVDEILTVMKETSHPPTVVTYNTLINGLCKSGLVNRAIDFFHQM 369

Query: 303 KERHCVPDNITFATMIQA 320
              +C+PD +T+ T++ A
Sbjct: 370 VYENCLPDIVTYNTLLGA 387



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 121/277 (43%), Gaps = 9/277 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +QA   ++  L  G  P +  YT L+    +      A   + DM ++  C PD+ TY+ 
Sbjct: 220 DQAVRFWKEQLRRGCPPYLITYTILIELVCKHCGTVRAMEVLEDM-AIEGCYPDLVTYNS 278

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  +++    I+  M   G+E +A+TYNT++        ++E++   + M E+ 
Sbjct: 279 LVNFTCKQGKYEDAALIIINMLSHGMEPNAITYNTLLHSLCSCGLWDEVDEILTVMKETS 338

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR------- 183
              P + T N++I+    SG + +   ++++        DI T N L  +  +       
Sbjct: 339 H-PPTVVTYNTLINGLCKSGLVNRAIDFFHQMVYENCLPDIVTYNTLLGALCKEECWMSP 397

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           +  ++    ++  M KR        Y  VI+        +   +  + M     KP+   
Sbjct: 398 SSQFEDAVEILREMGKRDHRINSYAYRSVIDGLCNNKKTDIAIQVLEIMISSRCKPDEEI 457

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
           Y +L+++ + AG++ + + + +++ N  V+ D    +
Sbjct: 458 YSALINSLADAGMMEEANELRQKLINIKVLKDQSILH 494



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 87/214 (40%), Gaps = 9/214 (4%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P+     ++I  +     I K  +      + G   D+ T N++     + G   K++S 
Sbjct: 131 PNFSCCTNLIRGFIKVDQINKAARILKIMVMSGGVPDVITYNMMVGGLCKRG---KLKSA 187

Query: 194 MDFMQKRFFF---PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           +D ++        P VVTYN +I       + ++   ++K+   RG  P  ITY  L+  
Sbjct: 188 IDLLEDMSLSGCPPDVVTYNTIIRCMFHNANFDQAVRFWKEQLRRGCPPYLITYTILIEL 247

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K    ++   +L  +       D   +N +++   + G  E    + + M      P+
Sbjct: 248 VCKHCGTVRAMEVLEDMAIEGCYPDLVTYNSLVNFTCKQGKYEDAALIIINMLSHGMEPN 307

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
            IT+ T++ +  + G+ +    +   +  MKE S
Sbjct: 308 AITYNTLLHSLCSCGLWDEVDEI---LTVMKETS 338



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 80/181 (44%), Gaps = 9/181 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L  C   ++   +  VM      P+V  Y  L++   +SGL++ A    + M    +C P
Sbjct: 318 LCSCGLWDEVDEILTVMKETSHPPTVVTYNTLINGLCKSGLVNRAIDFFHQM-VYENCLP 376

Query: 64  DVYTYSILIKSCTKFH-------RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           D+ TY+ L+ +  K         +F+   +IL EM       ++  Y ++IDG    KK 
Sbjct: 377 DIVTYNTLLGALCKEECWMSPSSQFEDAVEILREMGKRDHRINSYAYRSVIDGLCNNKKT 436

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           +        M+ S  C PD    +++I++  ++G +E+  +   +   + V  D   L+ 
Sbjct: 437 DIAIQVLEIMI-SSRCKPDEEIYSALINSLADAGMMEEANELRQKLINIKVLKDQSILHF 495

Query: 177 L 177
           L
Sbjct: 496 L 496



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 1/147 (0%)

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           ++D M +R   P       +I  F K   I K     K M   G  P+ ITY  +V    
Sbjct: 120 LIDVMARRSQIPNFSCCTNLIRGFIKVDQINKAARILKIMVMSGGVPDVITYNMMVGGLC 179

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           K G +     +L  +  S    D   +N II       + ++    +     R C P  I
Sbjct: 180 KRGKLKSAIDLLEDMSLSGCPPDVVTYNTIIRCMFHNANFDQAVRFWKEQLRRGCPPYLI 239

Query: 313 TFATMIQ-AYNALGMTEAAQNLENKMI 338
           T+  +I+      G   A + LE+  I
Sbjct: 240 TYTILIELVCKHCGTVRAMEVLEDMAI 266


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 157/320 (49%), Gaps = 8/320 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+Q +  +A  LF+ M+   + P+V +YT L+        + EA S    M++ S   
Sbjct: 202 GCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRN-SGML 260

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++YTY+ ++    K        ++  EM   G+  + VT+  +IDG  K    +EM S+
Sbjct: 261 PNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKT---DEMVSA 317

Query: 123 FSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              +++  S G  P+IF  N +I  Y  +GN+ +    ++E     +  D+ T +IL K 
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKG 377

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                  ++   ++  M+K+ F P  VTYN +I+ + K G++EK  E   +M  +G++PN
Sbjct: 378 LCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            IT+ +L+  Y KAG +     +  ++    ++ D   +  +I  + + G+ ++   L  
Sbjct: 438 IITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHK 497

Query: 301 TMKERHCVPDNITFATMIQA 320
            M+E    P+  T + +I  
Sbjct: 498 EMQEAGLHPNVFTLSCLIDG 517



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 143/318 (44%), Gaps = 2/318 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M++ G  P+V  Y  L+    + G   +AF   ++M       P V  Y+ILI+      
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIE-KKIFPTVVIYTILIRGLCGES 242

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R    E +   M   G+  +  TYNT++DGY K    ++    +  M+   G  P++ T 
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEML-GDGLLPNVVTF 301

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
             +I     +  +    K+  +    GV  +I   N L   Y +AG   +  S+   ++K
Sbjct: 302 GILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEK 361

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P V TY+I+I+       +E+ +   ++MK +G  PN++TY +L+  Y K G + K
Sbjct: 362 HEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEK 421

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +  Q+    +  +   F+ +I  Y +AG +E    L+  M  +  +PD + +  +I 
Sbjct: 422 AIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALID 481

Query: 320 AYNALGMTEAAQNLENKM 337
            +   G T+ A  L  +M
Sbjct: 482 GHFKDGNTKEAFRLHKEM 499



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 8/315 (2%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P++     ++    + G  D  +    DM +     P+V TY  LI  C +   F    +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVA-RGASPNVVTYGTLIDGCCRQGDFLKAFR 214

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  EM    I  + V Y  +I G     +  E ES F  M  SG   P+++T N+M+  Y
Sbjct: 215 LFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSG-MLPNLYTYNTMMDGY 273

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF--- 203
               +++K  + Y E    G+  ++ T  IL     +    D+M S   F+     F   
Sbjct: 274 CKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKT---DEMVSARKFLIDMASFGVV 330

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P +  YN +I+ + KAG++ +      +++   + P+  TY  L+        + + D +
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L++++    + +   +N +I  Y + G++EK  E+   M E+   P+ ITF+T+I  Y  
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450

Query: 324 LGMTEAAQNLENKMI 338
            G  EAA  L  +M+
Sbjct: 451 AGKMEAAMGLYTEMV 465



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 146/335 (43%), Gaps = 17/335 (5%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G C +    +A  +F  M + G+ P++  Y  ++  Y +   + +A     +M   
Sbjct: 233 ILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG- 291

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               P+V T+ ILI    K        K L +M+  G+  +   YN +IDGY KA    E
Sbjct: 292 DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSE 351

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             S  S  +E     PD+FT + +I        +E+ +    E    G   +  T N L 
Sbjct: 352 ALSLHSE-IEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLI 410

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             Y + G  +K   V   M ++   P ++T++ +I+ + KAG +E     + +M  +G+ 
Sbjct: 411 DGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLL 470

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+ + Y +L+  + K G   +   + ++++ + +  +    +C+I    + G +    +L
Sbjct: 471 PDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKL 530

Query: 299 FLT-------------MKERHCVPDNITFATMIQA 320
           FL              +    C P+++ +  +IQ 
Sbjct: 531 FLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQG 565



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 5/194 (2%)

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           +ES    P++F +  +I A+   G +E+    Y +   M V   +Q  N++     + G 
Sbjct: 119 LESSKFTPNVFGV--LIIAFSEMGLVEEALWVYYK---MDVLPAMQACNMVLDGLVKKGR 173

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           +D M  V   M  R   P VVTY  +I+   + G   K    F +M  + + P  + Y  
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+        I + +S+ R + NS ++ +   +N ++  Y +   V+K  EL+  M    
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDG 293

Query: 307 CVPDNITFATMIQA 320
            +P+ +TF  +I  
Sbjct: 294 LLPNVVTFGILIDG 307



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 17/196 (8%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E A  L+  M+  GL P V  YTAL+  + + G   EAF    +M+  +   
Sbjct: 447 GYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQE-AGLH 505

Query: 63  PDVYTYSILIKSCTKFHRF-DLIEKILA------------EMSYLGIECSAVTYNTIIDG 109
           P+V+T S LI    K  R  D I+  LA            E+       + V Y  +I G
Sbjct: 506 PNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQG 565

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
                +  +    FS M    G  PD+FT   +I  +  + ++  +     +   MG+  
Sbjct: 566 LCTDGRIFKASKFFSDM-RCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIP 624

Query: 170 DIQTLNILTKSYGRAG 185
           +     +L K Y  +G
Sbjct: 625 NSSVYRVLAKGYEESG 640


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 151/325 (46%), Gaps = 5/325 (1%)

Query: 12  QASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q SL   V   ML  G +P      +LV+ + +   + +A S ++ M  +   +PD+  Y
Sbjct: 135 QVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG-YRPDIVAY 193

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I S  K  R +       E+   GI  + VTY  +++G   + ++ +       M++
Sbjct: 194 NAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIK 253

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
                P++ T ++++ A+  +G + + ++ + E   M +  DI T + L          D
Sbjct: 254 RK-ITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   + D M  +  FP VV+YN +I  F KA  +E   + F+KM  RG+  N++TY +L+
Sbjct: 313 EANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLI 372

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             + + G + K      Q+++  V  D   +N ++      G +EK   +F  M++    
Sbjct: 373 QGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMD 432

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
            D +T+ T+IQ     G  E A  L
Sbjct: 433 LDIVTYTTVIQGMCKTGKVEDAWGL 457



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 154/335 (45%), Gaps = 4/335 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C++     A  L + M+  G +P +  Y A++ +  ++  +++A     ++      +
Sbjct: 164 GFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGR-KGIR 222

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V TY+ L+       R++   ++L +M    I  + +TY+ ++D + K  K  E +  
Sbjct: 223 PNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEI 282

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  MV      PDI T +S+I+       I++  + ++     G   D+ + N L   + 
Sbjct: 283 FEEMVRMS-IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFC 341

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A   +    +   M +R      VTYN +I+ F + G ++K +E+F +M   G+ P+  
Sbjct: 342 KAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIW 401

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+      GL+ K   I   ++ S++ LD   +  +I    + G VE    LF ++
Sbjct: 402 TYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSL 461

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +   PD +T+ TM+      G+    + L  KM
Sbjct: 462 SLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKM 496



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 153/322 (47%), Gaps = 2/322 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M+     PS+  +  L+SA  +    D   S    M+ V   + D+YT++I+I   
Sbjct: 72  LFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKME-VLGIRNDLYTFNIVINCF 130

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
               +  L   +L +M  LG E   VT  ++++G+ +  +  +  S    MVE G   PD
Sbjct: 131 CCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY-RPD 189

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I   N++I +   +  +     ++ E    G++ ++ T   L      +G ++    ++ 
Sbjct: 190 IVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLR 249

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M KR   P V+TY+ +++ F K G + + +E F++M    + P+ +TY SL++      
Sbjct: 250 DMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHD 309

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            I + + +   + +     D   +N +I+ + +A  VE   +LF  M +R  V + +T+ 
Sbjct: 310 RIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYN 369

Query: 316 TMIQAYNALGMTEAAQNLENKM 337
           T+IQ +  +G  + AQ   ++M
Sbjct: 370 TLIQGFFQVGDVDKAQEFFSQM 391



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 111/241 (46%), Gaps = 1/241 (0%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           S V +N ++    K KK++ +  S    +E  G   D++T N +I+ +     +      
Sbjct: 84  SIVDFNRLLSAIVKMKKYDVV-ISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSV 142

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
             +   +G + D  T+  L   + R        S++D M +  + P +V YN +I++  K
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCK 202

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
              +    ++FK++  +G++PN +TY +LV+    +G       +LR +    +  +   
Sbjct: 203 TRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVIT 262

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ++ ++ A+ + G V +  E+F  M      PD +T++++I         + A  + + M+
Sbjct: 263 YSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 322

Query: 339 A 339
           +
Sbjct: 323 S 323



 Score = 38.5 bits (88), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 53/134 (39%)

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           T+NIVI  F     +        KM   G +P+ +T  SLV+ + +   +    S++ ++
Sbjct: 122 TFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
                  D   +N II +  +   V    + F  +  +   P+ +T+  ++      G  
Sbjct: 182 VEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRW 241

Query: 328 EAAQNLENKMIAMK 341
             A  L   MI  K
Sbjct: 242 NDAARLLRDMIKRK 255


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 7/350 (2%)

Query: 5   GKCKQPEQA---SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           G CK  + +    L F+  L+ G         AL+    ++G LDEAF    ++     C
Sbjct: 479 GLCKHGKHSKALELWFQ-FLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILG-RGC 536

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
             D  +Y+ LI  C    + D     L EM   G++    TY+ +I G     K EE   
Sbjct: 537 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEE-AI 595

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F    +  G  PD++T + MI     +   E+ +++++E     V+ +    N L ++Y
Sbjct: 596 QFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAY 655

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R+G       + + M+ +   P   TY  +I+       +E+ +  F++M+  G++PN 
Sbjct: 656 CRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNV 715

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
             Y +L+  Y K G ++KV+ +LR++ + +V  +   +  +I  Y + G+V +   L   
Sbjct: 716 FHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNE 775

Query: 302 MKERHCVPDNITFATMIQAY-NALGMTEAAQNLENKMIAMKENSGKKLIQ 350
           M+E+  VPD+IT+   I  Y    G+ EA +  + +  A       KLIQ
Sbjct: 776 MREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDEENYAAIIEGWNKLIQ 825



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 126/262 (48%), Gaps = 11/262 (4%)

Query: 43  GLLDEAFSTINDMKSVSDCKPDVYTY---SILIKS-CTKFHRFD--LIEKILAEMSYLGI 96
           GL D   +  + M S+S C  +        +LI+  CT+F R    L   +   ++  G+
Sbjct: 163 GLRDSRVAIADAMASLSLCFDEEIRRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGM 222

Query: 97  ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
             S  T N ++    +A +F++   +F  + +  G  PD++   + I+A+   G +E+  
Sbjct: 223 FPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--GVSPDVYLFTTAINAFCKGGKVEEAV 280

Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
           K +++    GV  ++ T N +    G  G YD+     + M +R   PT++TY+I+++  
Sbjct: 281 KLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGL 340

Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            +A  I       K+M  +G  PN I Y +L+ ++ +AG + K   I   + +  + L +
Sbjct: 341 TRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTS 400

Query: 277 PFFNCIISAY---GQAGDVEKM 295
             +N +I  Y   GQA + E++
Sbjct: 401 STYNTLIKGYCKNGQADNAERL 422



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 138/346 (39%), Gaps = 50/346 (14%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLD---EAFSTINDMKSVSDCKPDVYTYSILI 72
           +F V+ + G+ PS      L+++  ++       EAF  +   K VS   PDVY ++  I
Sbjct: 213 VFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV--CKGVS---PDVYLFTTAI 267

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
            +  K  + +   K+ ++M   G+  + VT+NT+IDG G   +++E       MVE G  
Sbjct: 268 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERG-M 326

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            P + T + ++     +  I        E    G   ++   N L  S+  AG  +K   
Sbjct: 327 EPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE 386

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM-------------------- 232
           + D M  +    T  TYN +I+ + K G  +  E   K+M                    
Sbjct: 387 IKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLC 446

Query: 233 KH---------------RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
            H               R M P      +L+S   K G   K   +  Q  N   ++DT 
Sbjct: 447 SHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR 506

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKE---RHCVPDNITFATMIQA 320
             N ++    +AG   K+ E F   KE   R CV D +++ T+I  
Sbjct: 507 TSNALLHGLCEAG---KLDEAFRIQKEILGRGCVMDRVSYNTLISG 549



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 138/325 (42%), Gaps = 9/325 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LF  M   G+ P+V  +  ++   G  G  DEAF     M      +P + TYSI
Sbjct: 277 EEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVE-RGMEPTLITYSI 335

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+K  T+  R      +L EM+  G   + + YN +ID + +A    +       MV S 
Sbjct: 336 LVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV-SK 394

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G      T N++I  Y  +G  +  E+   E   +G   +  +   +        M+D  
Sbjct: 395 GLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSA 454

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              +  M  R   P       +I    K G   K  E + +  ++G   ++ T  +L+  
Sbjct: 455 LRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHG 514

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE---RHC 307
             +AG + +   I +++     ++D   +N +IS  G  G  +K+ E F+ + E   R  
Sbjct: 515 LCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLIS--GCCGK-KKLDEAFMFLDEMVKRGL 571

Query: 308 VPDNITFATMIQA-YNALGMTEAAQ 331
            PDN T++ +I   +N   + EA Q
Sbjct: 572 KPDNYTYSILICGLFNMNKVEEAIQ 596



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 153/383 (39%), Gaps = 51/383 (13%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L + K+   A  + + M   G  P+V VY  L+ ++ ++G L++A   I D+        
Sbjct: 340 LTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIE-IKDLMVSKGLSL 398

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM---- 119
              TY+ LIK   K  + D  E++L EM  +G   +  ++ ++I        F+      
Sbjct: 399 TSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFV 458

Query: 120 -ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNEFNLMGVKADIQTLNIL 177
            E     M   GG       L ++IS     G   K +E W+   N  G   D +T N L
Sbjct: 459 GEMLLRNMSPGGG------LLTTLISGLCKHGKHSKALELWFQFLN-KGFVVDTRTSNAL 511

Query: 178 TKSYGRAGMYDKMRSV-----------------------------------MDFMQKRFF 202
                 AG  D+   +                                   +D M KR  
Sbjct: 512 LHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGL 571

Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
            P   TY+I+I        +E+  +++   K  GM P+  TY  ++    KA    +   
Sbjct: 572 KPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQE 631

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
              ++ + +V  +T  +N +I AY ++G +    EL   MK +   P++ T+ ++I+  +
Sbjct: 632 FFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMS 691

Query: 323 ALGMTEAAQNL--ENKMIAMKEN 343
            +   E A+ L  E +M  ++ N
Sbjct: 692 IISRVEEAKLLFEEMRMEGLEPN 714


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 151/334 (45%), Gaps = 2/334 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K K   +A  L+  M+S G+ P V  Y AL+S +   G + +A    N M    +  P+V
Sbjct: 224 KVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKM-IFENINPNV 282

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YT++IL+    K  R    + +LA M   GI+    TYN+++D Y   K+  + +  F+ 
Sbjct: 283 YTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNT 342

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
            +   G +P+I + + MI  +     +++    + E +   +  D+ T N L     + G
Sbjct: 343 -ISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLG 401

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
                  ++D M  R      +TYN +++   K   ++K      KMK  G++P+  TY 
Sbjct: 402 KISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYT 461

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +LV    K G +     +   +     ILD   +  +I  +   G  ++  +L   M+E 
Sbjct: 462 TLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEEN 521

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            C+P+ +T+  +I +       + A+ L  +MI 
Sbjct: 522 GCIPNAVTYEIIICSLFDKDENDKAEKLLREMIT 555



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 163/335 (48%), Gaps = 4/335 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + ++ L  +   DG  ++P+V +Y  ++ +  +  L++EAF   ++M S     
Sbjct: 186 GLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVS-KGIS 244

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TY+ LI       +      +  +M +  I  +  T+N ++DG+ K ++ +E ++ 
Sbjct: 245 PDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNV 304

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
            + M++ G   PD+FT NS++  Y     + K +  +N  +  GV  +I + +I+   + 
Sbjct: 305 LAMMMKQG-IKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFC 363

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    D+  ++   M      P VVTYN +I+   K G I    +   +M  RG+  + I
Sbjct: 364 KIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKI 423

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S++ A  K   + K  ++L ++++  +  D   +  ++    + G +E    +F  +
Sbjct: 424 TYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDL 483

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +  + D   +  MIQ + + G+ + + +L +KM
Sbjct: 484 LVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKM 518



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 146/332 (43%), Gaps = 5/332 (1%)

Query: 9   QPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           Q  Q  L F V+   L  G +P+V   T L+      G + +A    +D         + 
Sbjct: 119 QLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQ-FHDKVVALGFHLNK 177

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
            +Y  LI    K  +     ++L  +    ++ + V YNTIID   K K   E    +S 
Sbjct: 178 VSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSE 237

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           MV S G  PD+ T N++IS +   G ++     +N+     +  ++ T NIL   + +  
Sbjct: 238 MV-SKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKER 296

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
              + ++V+  M K+   P V TYN +++ +     + K +  F  +  RG+ PN  +Y 
Sbjct: 297 RLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYS 356

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            ++  + K   + +  ++ +++  +++I D   +N +I    + G +    +L   M +R
Sbjct: 357 IMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDR 416

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               D IT+ +++ A       + A  L  KM
Sbjct: 417 GVPHDKITYNSILDALCKNHQVDKAIALLTKM 448



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 109/230 (47%), Gaps = 2/230 (0%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+  +A  +F  +   G+ P++  Y+ ++  + +   +DEA +   +M   ++  PDV T
Sbjct: 331 KEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHC-NNIIPDVVT 389

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           Y+ LI    K  +     K++ EM   G+    +TYN+I+D   K  + ++  +  + M 
Sbjct: 390 YNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMK 449

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           + G   PDI T  +++     +G +E     + +  + G   D+     + + +   G++
Sbjct: 450 DEG-IQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLF 508

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
           D+   ++  M++    P  VTY I+I +       +K E+  ++M  RG+
Sbjct: 509 DESLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 100/222 (45%)

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
             + SSF+ ++      P IF    ++ +   S +   +   + +    G+ +D+  L+I
Sbjct: 53  HNLVSSFNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSI 112

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L   + + G      SV+  + K  + P V+T   +I+     G I +  ++  K+   G
Sbjct: 113 LINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALG 172

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
              N ++Y +L++   K G       +LR+V+   V  +   +N II +  +   V +  
Sbjct: 173 FHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAF 232

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +L+  M  +   PD +T+  +I  +  +G  + A +L NKMI
Sbjct: 233 DLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMI 274



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 131/315 (41%), Gaps = 48/315 (15%)

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY------GKAKKFE 117
           D+   SILI   ++  +  L   +LA++  +G E + +T  T+I G        +A +F 
Sbjct: 106 DLVILSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFH 165

Query: 118 EM---------ESSFSAMVESGGC--------------------HPDIFTLNSMISAYGN 148
           +          + S+  ++ +G C                     P++   N++I +   
Sbjct: 166 DKVVALGFHLNKVSYGTLI-NGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCK 224

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF---FPT 205
              + +    Y+E    G+  D+ T N L   +   G   KM+   D   K  F    P 
Sbjct: 225 VKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVG---KMKDATDLFNKMIFENINPN 281

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V T+NI+++ F K   +++ +     M  +G+KP+  TY SL+  Y     + K   I  
Sbjct: 282 VYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFN 341

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC---VPDNITFATMIQAYN 322
            +    V  +   ++ +I  + +   V++   LF   KE HC   +PD +T+ ++I    
Sbjct: 342 TISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLF---KEMHCNNIIPDVVTYNSLIDGLC 398

Query: 323 ALGMTEAAQNLENKM 337
            LG    A  L ++M
Sbjct: 399 KLGKISYALKLVDEM 413


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 153/338 (45%), Gaps = 24/338 (7%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG C +P   + L   +++ G         AL  ++ Q GL                  P
Sbjct: 173 LGCCIEPYAYNYLLNSLIAHGRAQDA---VALFESWIQDGLY----------------SP 213

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV++++++IK   +   F    +++  M+  G     +T+N ++DG  +AK+  +     
Sbjct: 214 DVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVL 273

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             +   G C P+  T  S+IS Y  +G +E     YN+    G + +  T N+L   YG+
Sbjct: 274 RRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGK 333

Query: 184 AGMYDKMRSVMDFMQ--KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           A   D   +V  + Q   R   P VVT++ +I+ + + G ++  +  +K+M    ++PN 
Sbjct: 334 A--LDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNV 391

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVE-NSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            T+  ++ +  K     +   ILR++   +D+   T  +N +I    + G V++   +  
Sbjct: 392 YTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVT 451

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            MKE+ C PD  T+  +I  +   G    A  L +KM+
Sbjct: 452 DMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMV 489



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 144/320 (45%), Gaps = 7/320 (2%)

Query: 11  EQASLLFEVMLSDGL-KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           + A  LFE  + DGL  P V  +  ++    + G   +A   +  M     C PD  T++
Sbjct: 196 QDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFG-CSPDTITHN 254

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           IL+    +  + +   ++L  +   G+ C  +AVTY ++I GY KA K E+  S ++ M+
Sbjct: 255 ILVDGLCRAKQVNKGHEVLRRLQRDGV-CMPNAVTYTSVISGYCKAGKMEDAMSVYNDML 313

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           ESG   P+  T N +I+ YG + ++E   + Y +  L     D+ T + L   Y R G  
Sbjct: 314 ESGT-RPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQL 372

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCS 246
           D  + +   M      P V T++I+I +  K     +  +  +++  R  + P +  Y  
Sbjct: 373 DDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNP 432

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++    K G + + + I+  ++      D   +  +I  +   G + +   LF  M E  
Sbjct: 433 VIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAG 492

Query: 307 CVPDNITFATMIQAYNALGM 326
           C PDNIT  + +      GM
Sbjct: 493 CRPDNITVNSFVSCVLKAGM 512



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 128/314 (40%), Gaps = 36/314 (11%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           + PS   Y  +++   +SG   +A    + M   S   P+   +S +  SCT     D  
Sbjct: 104 VPPSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAA 163

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
             +L + S LG       YN +++      + ++  + F + ++ G   PD+++ N +I 
Sbjct: 164 STLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIK 223

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFF 203
                GN +K  +        G   D  T NIL     RA   +K   V+  +Q+     
Sbjct: 224 GVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCM 283

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P  VTY  VI  + KAG +E     +  M   G +PN++TY                   
Sbjct: 284 PNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTY------------------- 324

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
                           N +I+ YG+A D+E    ++  +  RHC PD +TF+++I  Y  
Sbjct: 325 ----------------NVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCR 368

Query: 324 LGMTEAAQNLENKM 337
            G  + A+ +  +M
Sbjct: 369 CGQLDDAKRIWKEM 382



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 1/145 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C Q + A  +++ M    ++P+V  ++ ++ +  +     EA   + ++   +D  P  
Sbjct: 368 RCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQT 427

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           + Y+ +I    K  + D    I+ +M   G      TY  +I G+    +  E  + F  
Sbjct: 428 FIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHK 487

Query: 126 MVESGGCHPDIFTLNSMISAYGNSG 150
           MVE+ GC PD  T+NS +S    +G
Sbjct: 488 MVEA-GCRPDNITVNSFVSCVLKAG 511


>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 598

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 140/321 (43%), Gaps = 4/321 (1%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A +LF  ++    KP       L+    ++G +DEAF  +ND++S   C PDV TY+ LI
Sbjct: 160 AVVLFRELIRLRYKPVTYTVNILMRGLCRAGEIDEAFRLLNDLRSFG-CLPDVITYNTLI 218

Query: 73  KSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
               + +  D    +L E+   G      V+Y TII GY K  K EE    F  M+ SG 
Sbjct: 219 HGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGT 278

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P+ FT N++I  +G  G++      Y +  + G   D+ T   L   Y R G   +  
Sbjct: 279 A-PNTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAM 337

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            +   M  +    T+ T+++++        + K  +  + +    + P    Y  ++  Y
Sbjct: 338 DMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGY 397

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K+G + + + I+ ++E +    D   F  +I  +   G + +   +F  M    C PD 
Sbjct: 398 CKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGIFHKMLAVGCAPDE 457

Query: 312 ITFATMIQAYNALGMT-EAAQ 331
           IT   +       GM  EAA+
Sbjct: 458 ITVNNLRSCLLKAGMPGEAAR 478



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 126/279 (45%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           KP  YT +IL++   +    D   ++L ++   G     +TYNT+I G  +  + +   S
Sbjct: 173 KPVTYTVNILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARS 232

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
               +  +G   PD+ +  ++IS Y     +E+    + E    G   +  T N L   +
Sbjct: 233 LLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGF 292

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
           G+ G      ++ + M  +   P V T+  +I  + + G + +  + + KM  + +    
Sbjct: 293 GKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATL 352

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            T+  LVS       + K   ILR +  SD++     +N +I  Y ++G+V++  ++   
Sbjct: 353 YTFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAE 412

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           M+   C PD +TF  +I  +   G    A  + +KM+A+
Sbjct: 413 MEVNRCKPDKLTFTILIIGHCMKGRMPEAIGIFHKMLAV 451



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 138/310 (44%), Gaps = 9/310 (2%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           ++M G C+  E  +A  L   + S G  P V  Y  L+    +   +D A S + ++   
Sbjct: 181 ILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLN 240

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            +  PDV +Y+ +I    KF + +    +  EM   G   +  T+N +I G+GK      
Sbjct: 241 GEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGDMAS 300

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             + +  M+   GC PD+ T  S+I+ Y   G + +    +++ N   + A + T ++L 
Sbjct: 301 ALALYEKMLVQ-GCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSVLV 359

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
                     K R ++  + +    P    YN VI+ + K+G++++  +   +M+    K
Sbjct: 360 SGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCK 419

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVE----NSDVILDTPFFNCIISA--YGQAGDV 292
           P+ +T+  L+  +   G + +   I  ++       D I      +C++ A   G+A  V
Sbjct: 420 PDKLTFTILIIGHCMKGRMPEAIGIFHKMLAVGCAPDEITVNNLRSCLLKAGMPGEAARV 479

Query: 293 EKMGELFLTM 302
           +K+    LT+
Sbjct: 480 KKVLAQNLTL 489



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 121/307 (39%), Gaps = 38/307 (12%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y+ L+ +  +S L   A   + D        PD      L+ S     R D+  ++LA++
Sbjct: 74  YSLLLRSLCRSNLHHTA-KVVYDWMRCDGQIPDNRLLGFLVWSYAIVGRLDVSRELLADV 132

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
               +  +AV YN + +   +  K  +    F  ++      P  +T+N ++     +G 
Sbjct: 133 QCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRY-KPVTYTVNILMRGLCRAGE 191

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM-DFMQKRFFFPTVVTYN 210
           I++  +  N+    G   D+ T N L     R    D+ RS++ +      F P VV+Y 
Sbjct: 192 IDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYT 251

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I  + K   +E+    F +M   G  PN+ T+                          
Sbjct: 252 TIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTF-------------------------- 285

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
                    N +I  +G+ GD+     L+  M  + CVPD  TF ++I  Y  LG    A
Sbjct: 286 ---------NALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQA 336

Query: 331 QNLENKM 337
            ++ +KM
Sbjct: 337 MDMWHKM 343


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 157/320 (49%), Gaps = 8/320 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+Q +  +A  LF+ M+   + P+V +YT L+        + EA S    M++ S   
Sbjct: 202 GCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRN-SGML 260

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++YTY+ ++    K        ++  EM   G+  + VT+  +IDG  K    +EM S+
Sbjct: 261 PNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKT---DEMVSA 317

Query: 123 FSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              +++  S G  P+IF  N +I  Y  +GN+ +    ++E     +  D+ T +IL K 
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKG 377

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                  ++   ++  M+K+ F P  VTYN +I+ + K G++EK  E   +M  +G++PN
Sbjct: 378 LCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            IT+ +L+  Y KAG +     +  ++    ++ D   +  +I  + + G+ ++   L  
Sbjct: 438 IITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHK 497

Query: 301 TMKERHCVPDNITFATMIQA 320
            M+E    P+  T + +I  
Sbjct: 498 EMQEAGLHPNVFTLSCLIDG 517



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 143/318 (44%), Gaps = 2/318 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M++ G  P+V  Y  L+    + G   +AF   ++M       P V  Y+ILI+      
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIE-KKIFPTVVIYTILIRGLCGES 242

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R    E +   M   G+  +  TYNT++DGY K    ++    +  M+   G  P++ T 
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEML-GDGLLPNVVTF 301

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
             +I     +  +    K+  +    GV  +I   N L   Y +AG   +  S+   ++K
Sbjct: 302 GILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEK 361

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P V TY+I+I+       +E+ +   ++MK +G  PN++TY +L+  Y K G + K
Sbjct: 362 HEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEK 421

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +  Q+    +  +   F+ +I  Y +AG +E    L+  M  +  +PD + +  +I 
Sbjct: 422 AIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALID 481

Query: 320 AYNALGMTEAAQNLENKM 337
            +   G T+ A  L  +M
Sbjct: 482 GHFKDGNTKEAFRLHKEM 499



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 8/315 (2%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P++     ++    + G  D  +    DM +     P+V TY  LI  C +   F    +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVA-RGASPNVVTYGTLIDGCCRQGDFLKAFR 214

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  EM    I  + V Y  +I G     +  E ES F  M  SG   P+++T N+M+  Y
Sbjct: 215 LFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGML-PNLYTYNTMMDGY 273

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF--- 203
               +++K  + Y E    G+  ++ T  IL     +    D+M S   F+     F   
Sbjct: 274 CKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKT---DEMVSARKFLIDMASFGVV 330

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P +  YN +I+ + KAG++ +      +++   + P+  TY  L+        + + D +
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L++++    + +   +N +I  Y + G++EK  E+   M E+   P+ ITF+T+I  Y  
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450

Query: 324 LGMTEAAQNLENKMI 338
            G  EAA  L  +M+
Sbjct: 451 AGKMEAAMGLYTEMV 465



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 140/322 (43%), Gaps = 15/322 (4%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  M + G+ P++  Y  ++  Y +   + +A     +M       P+V T+ IL
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLG-DGLLPNVVTFGIL 304

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K        K L +M+  G+  +   YN +IDGY KA    E  S  S  +E   
Sbjct: 305 IDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSE-IEKHE 363

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+FT + +I        +E+ +    E    G   +  T N L   Y + G  +K  
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V   M ++   P ++T++ +I+ + KAG +E     + +M  +G+ P+ + Y +L+  +
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH 483

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT---------- 301
            K G   +   + ++++ + +  +    +C+I    + G +    +LFL           
Sbjct: 484 FKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSK 543

Query: 302 ---MKERHCVPDNITFATMIQA 320
              +    C P+++ +  +IQ 
Sbjct: 544 TNELDRSLCSPNHVMYTALIQG 565



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 5/194 (2%)

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           +ES    P++F +  +I A+   G +E+    Y +   M V   +Q  N++     + G 
Sbjct: 119 LESSKFTPNVFGV--LIIAFSEMGLVEEALWVYYK---MDVLPAMQACNMVLDGLVKKGR 173

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           +D M  V   M  R   P VVTY  +I+   + G   K    F +M  + + P  + Y  
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+        I + +S+ R + NS ++ +   +N ++  Y +   V+K  EL+  M    
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDG 293

Query: 307 CVPDNITFATMIQA 320
            +P+ +TF  +I  
Sbjct: 294 LLPNVVTFGILIDG 307



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 86/404 (21%), Positives = 149/404 (36%), Gaps = 80/404 (19%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E A  L+  M+  GL P V  YTAL+  + + G   EAF    +M+  +   
Sbjct: 447 GYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQE-AGLH 505

Query: 63  PDVYTYSILIKSCTKFHRF-DLIEKILA------------EMSYLGIECSAVTYNTIIDG 109
           P+V+T S LI    K  R  D I+  LA            E+       + V Y  +I G
Sbjct: 506 PNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQG 565

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
                +  +    FS M    G  PD+FT   +I  +  + ++  +     +   MG+  
Sbjct: 566 LCTDGRIFKASKFFSDM-RCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIP 624

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDF--------------------MQKRF-------- 201
           +     +L K Y  +G    ++S + F                    ++ RF        
Sbjct: 625 NSSVYRVLAKGYEESGY---LKSALSFCGEGVQPLDRVNSEPWGSYTIRSRFQLCVVTEK 681

Query: 202 --------------------FFPTVVTYNIVIETFGKAGHI--------EKMEEYFKKMK 233
                               +F T++      E   K   I         K  + F++M+
Sbjct: 682 KECHSSYLTAFGIHSFVLLWYFHTILKPPSPHEILKKVPFIGQKGDQRPNKALQLFRQMQ 741

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
               +P+ +T    +SA +  G +   + I   + +  +  D    N +I+ Y + G++ 
Sbjct: 742 MDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIG 801

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
               LF   +++    D  T+ +MI  +   G  E A  L  +M
Sbjct: 802 TARRLFDGTQKK----DVTTWTSMIVGHALHGQAEEALQLFTEM 841



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/350 (19%), Positives = 134/350 (38%), Gaps = 60/350 (17%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P+  +YTAL+      G + +A    +DM+  S  +PDV+T  ++I+   +      +  
Sbjct: 554 PNHVMYTALIQGLCTDGRIFKASKFFSDMR-CSGLRPDVFTCIVIIQGHFRAMHLRDVMM 612

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE------------------------MESS 122
           + A++  +GI  ++  Y  +  GY ++   +                         + S 
Sbjct: 613 LQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGEGVQPLDRVNSEPWGSYTIRSR 672

Query: 123 FSAMV--ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           F   V  E   CH      +S ++A+G    +     WY  F+ +        +      
Sbjct: 673 FQLCVVTEKKECH------SSYLTAFGIHSFVLL---WY--FHTILKPPSPHEILKKVPF 721

Query: 181 YGRAGMYDKMRSVMDF--MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            G+ G     +++  F  MQ     P +VT  + +      G ++  E     ++HRG+ 
Sbjct: 722 IGQKGDQRPNKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLD 781

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            +     SL++ YSK G I     +    +  DV      +  +I  +   G  E+  +L
Sbjct: 782 TDLCLNNSLINMYSKCGEIGTARRLFDGTQKKDVTT----WTSMIVGHALHGQAEEALQL 837

Query: 299 FLTMKERH----------------CVPDNITFATMIQAYNALGMTEAAQN 332
           F  MKE +                 +P+++TF  ++ A +  G+ E  + 
Sbjct: 838 FTEMKETNKRARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQ 887


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 137/306 (44%), Gaps = 2/306 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y+ ++    + G LD AF+  N+M+ +   K D+  Y+ LI+      R+D   K+L +M
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEME-IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM 308

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
               I    V ++ +ID + K  K  E E     M++ G   PD  T  S+I  +     
Sbjct: 309 IKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG-ISPDTVTYTSLIDGFCKENQ 367

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           ++K     +     G   +I+T NIL   Y +A + D    +   M  R      VTYN 
Sbjct: 368 LDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNT 427

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ F + G +E  +E F++M  R ++P+ ++Y  L+      G   K   I  ++E S 
Sbjct: 428 LIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           + LD   +N II     A  V+   +LF ++  +   PD  T+  MI      G    A 
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEAD 547

Query: 332 NLENKM 337
            L  KM
Sbjct: 548 LLFRKM 553



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 152/330 (46%), Gaps = 37/330 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L + M+  G KP++    ALV+    +G + +A   I+ M   +  +P+  TY  +
Sbjct: 160 EALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVE-TGFQPNEVTYGPV 218

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +K   K  +  L  ++L +M    I+  AV Y+ IIDG  K                   
Sbjct: 219 LKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK------------------- 259

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
                             G+++     +NE  + G KADI     L + +  AG +D   
Sbjct: 260 -----------------DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGA 302

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++  M KR   P VV ++ +I+ F K G + + EE  K+M  RG+ P+++TY SL+  +
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K   + K + +L  + +     +   FN +I+ Y +A  ++   ELF  M  R  V D 
Sbjct: 363 CKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADT 422

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +T+ T+IQ +  LG  E A+ L  +M++ +
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRR 452



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 153/337 (45%), Gaps = 5/337 (1%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK    + A  LF  M   G K  + +YT L+  +  +G  D+    + DM   
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK- 310

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PDV  +S LI    K  +    E++  EM   GI    VTY ++IDG+ K  + ++
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  MV S GC P+I T N +I+ Y  +  I+   + + + +L GV AD  T N L 
Sbjct: 371 ANHMLDLMV-SKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           + +   G  +  + +   M  R   P +V+Y I+++     G  EK  E F+K++   M+
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKME 489

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            +   Y  ++     A  +     +   +    V  D   +N +I    + G + +   L
Sbjct: 490 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLL 549

Query: 299 FLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
           F  M+E    P+  T+  +I+A+   G  T++A+ +E
Sbjct: 550 FRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIE 586



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 127/272 (46%), Gaps = 5/272 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++ E+   L + M+  G+ P    YT+L+  + +   LD+A   ++ M S   C P+
Sbjct: 331 GKLREAEE---LHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVS-KGCGPN 386

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + T++ILI    K +  D   ++  +MS  G+    VTYNT+I G+ +  K E  +  F 
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            MV S    PDI +   ++    ++G  EK  + + +     ++ DI   NI+      A
Sbjct: 447 EMV-SRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNA 505

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              D    +   +  +   P V TYNI+I    K G + + +  F+KM+  G  PN  TY
Sbjct: 506 SKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTY 565

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
             L+ A+   G   K   ++ +++     +D 
Sbjct: 566 NILIRAHLGEGDATKSAKLIEEIKRCGFSVDA 597



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 145/331 (43%), Gaps = 2/331 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + + A  LF+ M     +P +  ++ L S   ++   D        M+ +     ++YT 
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQME-LKGIAHNLYTL 110

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           SI+I  C +  +  L    + ++  LG E   VT++T+I+G     +  E       MVE
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE 170

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G   P + TLN++++    +G +       +     G + +  T   + K   ++G   
Sbjct: 171 MGH-KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTA 229

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
               ++  M++R      V Y+I+I+   K G ++     F +M+ +G K + I Y +L+
Sbjct: 230 LAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLI 289

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             +  AG       +LR +    +  D   F+ +I  + + G + +  EL   M +R   
Sbjct: 290 RGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGIS 349

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           PD +T+ ++I  +      + A ++ + M++
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVS 380



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 117/298 (39%), Gaps = 41/298 (13%)

Query: 46  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
           D+A     +M + S  +P +  +S L     +  ++DL+  +  +M   GI  +  T + 
Sbjct: 54  DDAVDLFQEM-TRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSI 112

Query: 106 IIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
           +I+   + +K   +  +FSAM  +   G  PD  T +++I+     G + +  +  +   
Sbjct: 113 MINCCCRCRK---LSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV 169

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
            MG K                                   PT++T N ++      G + 
Sbjct: 170 EMGHK-----------------------------------PTLITLNALVNGLCLNGKVS 194

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
                  +M   G +PN +TY  ++    K+G       +LR++E   + LD   ++ II
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
               + G ++    LF  M+ +    D I + T+I+ +   G  +    L   MI  K
Sbjct: 255 DGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 137/306 (44%), Gaps = 2/306 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           Y+ ++    + G LD AF+  N+M+ +   K D+  Y+ LI+      R+D   K+L +M
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEME-IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM 308

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
               I    V ++ +ID + K  K  E E     M++ G   PD  T  S+I  +     
Sbjct: 309 IKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG-ISPDTVTYTSLIDGFCKENQ 367

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           ++K     +     G   +I+T NIL   Y +A + D    +   M  R      VTYN 
Sbjct: 368 LDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNT 427

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+ F + G +E  +E F++M  R ++P+ ++Y  L+      G   K   I  ++E S 
Sbjct: 428 LIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSK 487

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           + LD   +N II     A  V+   +LF ++  +   PD  T+  MI      G    A 
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEAD 547

Query: 332 NLENKM 337
            L  KM
Sbjct: 548 LLFRKM 553



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 152/330 (46%), Gaps = 37/330 (11%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L + M+  G KP++    ALV+    +G + +A   I+ M   +  +P+  TY  +
Sbjct: 160 EALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVE-TGFQPNEVTYGPV 218

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +K   K  +  L  ++L +M    I+  AV Y+ IIDG  K                   
Sbjct: 219 LKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCK------------------- 259

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
                             G+++     +NE  + G KADI     L + +  AG +D   
Sbjct: 260 -----------------DGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGA 302

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            ++  M KR   P VV ++ +I+ F K G + + EE  K+M  RG+ P+++TY SL+  +
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            K   + K + +L  + +     +   FN +I+ Y +A  ++   ELF  M  R  V D 
Sbjct: 363 CKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADT 422

Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           +T+ T+IQ +  LG  E A+ L  +M++ +
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRR 452



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 153/337 (45%), Gaps = 5/337 (1%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK    + A  LF  M   G K  + +YT L+  +  +G  D+    + DM   
Sbjct: 252 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK- 310

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PDV  +S LI    K  +    E++  EM   GI    VTY ++IDG+ K  + ++
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  MV S GC P+I T N +I+ Y  +  I+   + + + +L GV AD  T N L 
Sbjct: 371 ANHMLDLMV-SKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           + +   G  +  + +   M  R   P +V+Y I+++     G  EK  E F+K++   M+
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKME 489

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            +   Y  ++     A  +     +   +    V  D   +N +I    + G + +   L
Sbjct: 490 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLL 549

Query: 299 FLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
           F  M+E    P+  T+  +I+A+   G  T++A+ +E
Sbjct: 550 FRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIE 586



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 142/317 (44%), Gaps = 18/317 (5%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK ++ E+   L + M+  G+ P    YT+L+  + +   LD+A   ++ M S   C P+
Sbjct: 331 GKLREAEE---LHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVS-KGCGPN 386

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + T++ILI    K +  D   ++  +MS  G+    VTYNT+I G+ +  K E  +  F 
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            MV S    PDI +   ++    ++G  EK  + + +     ++ DI   NI+      A
Sbjct: 447 EMV-SRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNA 505

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              D    +   +  +   P V TYNI+I    K G + + +  F+KM+  G  PN  TY
Sbjct: 506 SKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTY 565

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L+ A+   G   K   ++ +++     +D       +S   +             +K 
Sbjct: 566 NILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLAR------------MLKA 613

Query: 305 RHCVPDNITFATMIQAY 321
            H  PD  TF T+++ +
Sbjct: 614 GH-EPDVFTFTTLLRPF 629



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 145/331 (43%), Gaps = 2/331 (0%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + + A  LF+ M     +P +  ++ L S   ++   D        M+ +     ++YT 
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQME-LKGIAHNLYTL 110

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           SI+I  C +  +  L    + ++  LG E   VT++T+I+G     +  E       MVE
Sbjct: 111 SIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVE 170

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
            G   P + TLN++++    +G +       +     G + +  T   + K   ++G   
Sbjct: 171 MGH-KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTA 229

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
               ++  M++R      V Y+I+I+   K G ++     F +M+ +G K + I Y +L+
Sbjct: 230 LAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLI 289

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             +  AG       +LR +    +  D   F+ +I  + + G + +  EL   M +R   
Sbjct: 290 RGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGIS 349

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           PD +T+ ++I  +      + A ++ + M++
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVS 380



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 114/286 (39%), Gaps = 28/286 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  LF+ M+S  ++P +  Y  L+     +G  ++A      ++  S  + D+  Y+I
Sbjct: 439 EVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEK-SKMELDIGIYNI 497

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I       + D    +   +   G++    TYN +I G  K     E +  F  M E G
Sbjct: 498 IIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR------- 183
              P+  T N +I A+   G+  K  K   E    G   D  TL     +  R       
Sbjct: 558 H-SPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHE 616

Query: 184 ------------------AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
                             A +YD   ++   M+   + P VVTYN VI+       I ++
Sbjct: 617 PDVFTFTTLLRPFCLEENASVYDA-PTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQV 675

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
                +M  RG +PN++T  + +S   K  L      +LR++EN +
Sbjct: 676 PGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKMENDN 721



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 117/298 (39%), Gaps = 41/298 (13%)

Query: 46  DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105
           D+A     +M + S  +P +  +S L     +  ++DL+  +  +M   GI  +  T + 
Sbjct: 54  DDAVDLFQEM-TRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSI 112

Query: 106 IIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
           +I+   + +K   +  +FSAM  +   G  PD  T +++I+     G + +  +  +   
Sbjct: 113 MINCCCRCRK---LSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV 169

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
            MG K                                   PT++T N ++      G + 
Sbjct: 170 EMGHK-----------------------------------PTLITLNALVNGLCLNGKVS 194

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
                  +M   G +PN +TY  ++    K+G       +LR++E   + LD   ++ II
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIII 254

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
               + G ++    LF  M+ +    D I + T+I+ +   G  +    L   MI  K
Sbjct: 255 DGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK 312


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 149/311 (47%), Gaps = 2/311 (0%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           PS+  ++ ++S   +S   D   S  + M+ V     D+Y+Y+I+I    +  RF +   
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHME-VCGIGHDLYSYNIVINCLCRCSRFVIALS 66

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           ++ +M   G E   VT +++I+G+ +  +  +     S M E  G  PD+   N++I   
Sbjct: 67  VVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM-EEMGFRPDVVIYNTIIDGS 125

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G +    + ++     GV+AD  T N L      +G +     +M  M  R   P V
Sbjct: 126 CKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNV 185

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           +T+  VI+ F K G   +  + +++M  R + P+  TY SL++     G + +   +L  
Sbjct: 186 ITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDL 245

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +     + D   +N +I+ + ++  V++  +LF  M +R  V D IT+ T+IQ Y   G 
Sbjct: 246 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 305

Query: 327 TEAAQNLENKM 337
            +AAQ + ++M
Sbjct: 306 PDAAQEIFSRM 316



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 161/366 (43%), Gaps = 34/366 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L +C +   A  +   M+  G +P V   ++L++ + Q   + +A   ++ M+ +   +P
Sbjct: 55  LCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG-FRP 113

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DV  Y+ +I    K    +   ++   M   G+   AVTYN+++ G   + ++ +     
Sbjct: 114 DVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLM 173

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             MV      P++ T  ++I  +   G   +  K Y E     V  D+ T N L      
Sbjct: 174 RDMVMRD-IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCM 232

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  D+ + ++D M  +   P VVTYN +I  F K+  +++  + F++M  RG+  ++IT
Sbjct: 233 HGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTIT 292

Query: 244 YCSLVSAYSKAG-------LIMKVDS-------------------------ILRQVENSD 271
           Y +++  Y +AG       +  ++DS                         +   ++ S+
Sbjct: 293 YNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSE 352

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           + LD   +N +I    + G+VE   +LF ++  +   PD +++ TMI  +      + + 
Sbjct: 353 IELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSD 412

Query: 332 NLENKM 337
            L  KM
Sbjct: 413 LLYRKM 418



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 135/303 (44%), Gaps = 36/303 (11%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK      A  LF+ M  DG++     Y +LV+    SG   +A   + DM  + D  
Sbjct: 124 GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDM-VMRDIV 182

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+V T++ +I    K  +F    K+  EM+   ++    TYN++I+G     + +E +  
Sbjct: 183 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 242

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              MV + GC PD+ T N++I+ +  S  +++  K + E    G+  D  T N + + Y 
Sbjct: 243 LDLMV-TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYF 301

Query: 183 RAGMYDKMRSVMDFMQKRFFFPT--------------------------------VVTYN 210
           +AG  D  + +   M  R    T                                + TYN
Sbjct: 302 QAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYN 361

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           IVI    K G++E   + F+ +  +G+KP+ ++Y +++S + +     K D + R+++  
Sbjct: 362 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 421

Query: 271 DVI 273
            ++
Sbjct: 422 GLL 424



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 5/228 (2%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L+E M    + P V  Y +L++     G +DEA   + D+     C PDV TY+ L
Sbjct: 203 EAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML-DLMVTKGCLPDVVTYNTL 261

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K  R D   K+  EM+  G+    +TYNTII GY +A + +  +  FS M     
Sbjct: 262 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM----D 317

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P+I T + ++     +  +EK    +       ++ DI T NI+     + G  +   
Sbjct: 318 SRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAW 377

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +   +  +   P VV+Y  +I  F +    +K +  ++KM+  G+ P
Sbjct: 378 DLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 116/277 (41%), Gaps = 36/277 (12%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  +S ++    K   +DL+  +   M   GI     +YN +I+   +  +F    S 
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M++ G   PD+ T++S+I+ +     +                     +++++K   
Sbjct: 68  VGKMMKFGY-EPDVVTVSSLINGFCQGNRV------------------FDAIDLVSK--- 105

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                         M++  F P VV YN +I+   K G +    E F +M+  G++ +++
Sbjct: 106 --------------MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAV 151

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SLV+    +G       ++R +   D++ +   F  +I  + + G   +  +L+  M
Sbjct: 152 TYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEM 211

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             R   PD  T+ ++I      G  + A+ + + M+ 
Sbjct: 212 TRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVT 248


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 162/359 (45%), Gaps = 36/359 (10%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-VSDCKPDVYTYSILIKS 74
           ++  ML  G++PS+  Y  L+ ++ ++G +D+A + + DM++  + C P+  TY+++I  
Sbjct: 216 VYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVING 275

Query: 75  CTKFHRF-------------------------------DLIEK---ILAEMSYLGIECSA 100
             +                                   D +EK   +L EM   GI  + 
Sbjct: 276 LARKGELEKAAQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTV 335

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
           VTYNT+IDG  K    E  +  F  M  + G  PD+ T NS+I+ Y  +GN+++    + 
Sbjct: 336 VTYNTLIDGLFKTGNAEAAQVKFDEM-RAKGLLPDLITYNSLINGYCKAGNLKQALCLFG 394

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           +    G+   + T NIL   Y R G  +  R + + M +    P V TY I++       
Sbjct: 395 DLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVR 454

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
           ++  +  +F +M  +G++P+   Y + +SA    G I     +  ++    +  DT  +N
Sbjct: 455 NLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYN 514

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            +I    + G ++    L++ M       D +T+  +I A+   G    A+N+ + M+A
Sbjct: 515 VLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVA 573



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 2/242 (0%)

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM-VESGGCHPDIFT 138
           R+D +  + ++M  LG+E S  TYNT++D + KA + ++  +    M   + GC P+  T
Sbjct: 209 RWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVT 268

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
            N +I+     G +EK  +  +   L   KA   T N L          +K  +++  M+
Sbjct: 269 YNVVINGLARKGELEKAAQLVDIMRL-SKKASAFTYNPLITGLLARDFVEKAGALLLEME 327

Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
                PTVVTYN +I+   K G+ E  +  F +M+ +G+ P+ ITY SL++ Y KAG + 
Sbjct: 328 NEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLK 387

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +   +   ++ + +      +N +I  Y + GD+E    L   M E  C+PD  T+  ++
Sbjct: 388 QALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILM 447

Query: 319 QA 320
             
Sbjct: 448 NG 449



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 153/371 (41%), Gaps = 37/371 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K    E A + F+ M + GL P +  Y +L++ Y ++G L +A     D+K  +   P
Sbjct: 345 LFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKR-AGLGP 403

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V TY+ILI    +    +   ++  EM+         TY  +++G    +    +   F
Sbjct: 404 TVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFF 463

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M+ S G  PD F  N+ ISA    G I    +   E  L G+ +D  T N+L     +
Sbjct: 464 DEML-SKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCK 522

Query: 184 AG-------MYDKM----------------------------RSVMDFMQKRFFFPTVVT 208
            G       ++ KM                            +++ D M      P+VVT
Sbjct: 523 TGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVT 582

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           Y I I T+ + G++     +F+KM   G++PN +TY  L+ A  + G          ++ 
Sbjct: 583 YTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEML 642

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
              ++ +   +  +I    + G+      L+  M ++   PD+ T   + + +    M +
Sbjct: 643 ERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKGFGEGHMYD 702

Query: 329 AAQNLENKMIA 339
           A Q LEN ++ 
Sbjct: 703 AVQYLENVVLG 713



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 143/328 (43%), Gaps = 2/328 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  L   M ++G+ P+V  Y  L+    ++G  + A    ++M++     PD+ TY+ 
Sbjct: 317 EKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMRA-KGLLPDLITYNS 375

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K         +  ++   G+  + +TYN +IDGY +    E        M E  
Sbjct: 376 LINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEED 435

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C PD+ T   +++      N+  +  +++E    G++ D    N    +    G     
Sbjct: 436 -CLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNA 494

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             + + M  R      VTYN++I+   K G ++     + KM   G++ + +TY  L+ A
Sbjct: 495 FQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHA 554

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           + + G +++  +I   +  S +      +   I  Y + G++      F  M E    P+
Sbjct: 555 HCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPN 614

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
            +T+  ++ A   +G TE+A    ++M+
Sbjct: 615 EVTYNVLMHALCRMGRTESAYQHFHEML 642



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 108/258 (41%), Gaps = 8/258 (3%)

Query: 1   MVMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--K 56
           ++M G C  +      + F+ MLS GL+P    Y   +SA    G +  AF    +M  +
Sbjct: 445 ILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLR 504

Query: 57  SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
            +S    D  TY++LI    K         +  +M   G+    VTY  +I  + +  + 
Sbjct: 505 GISS---DTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRL 561

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
            E ++ F  MV SG   P + T    I  Y   GN+     W+ +    GV+ +  T N+
Sbjct: 562 IEAKNIFDGMVASG-LSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNV 620

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L  +  R G  +        M +R   P   TY ++I+   K G+       + +M  +G
Sbjct: 621 LMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKG 680

Query: 237 MKPNSITYCSLVSAYSKA 254
           + P+  T+ +L   + + 
Sbjct: 681 IHPDHCTHNALFKGFGEG 698



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 4/207 (1%)

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S+F  M   G   P +   N ++    ++   + M   Y++   +GV+  I T N L  S
Sbjct: 180 SAFQEMARHG-VAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDS 238

Query: 181 YGRAGMYDKMRSVMDFMQKRF--FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           + +AG  D+  +++  M+ R     P  VTYN+VI    + G +EK  +    M+    K
Sbjct: 239 FCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMR-LSKK 297

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            ++ TY  L++       + K  ++L ++EN  ++     +N +I    + G+ E     
Sbjct: 298 ASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVK 357

Query: 299 FLTMKERHCVPDNITFATMIQAYNALG 325
           F  M+ +  +PD IT+ ++I  Y   G
Sbjct: 358 FDEMRAKGLLPDLITYNSLINGYCKAG 384



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 9/178 (5%)

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
           + E    GV   ++  N + +    A  +D MR+V   M +    P++ TYN ++++F K
Sbjct: 182 FQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCK 241

Query: 219 AGHIEKMEEYFKKMKHR--GMKPNSITYCSLVSAYSKAGLIMKVDS---ILRQVENSDVI 273
           AG +++     K M+ R  G  PN +TY  +++  ++ G + K      I+R  + +   
Sbjct: 242 AGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKASAF 301

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
                +N +I+       VEK G L L M+    VP  +T+ T+I      G  EAAQ
Sbjct: 302 T----YNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQ 355


>gi|195613918|gb|ACG28789.1| leaf protein [Zea mays]
          Length = 637

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 145/278 (52%), Gaps = 3/278 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           KP + TY+IL+ + T    F+ I  +LAE+   G+   ++ +N +I+ + +AK+  E  +
Sbjct: 99  KPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVEAKRMGEAIN 158

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKS 180
           +F  M  S GCHP   T N++I  YG  G  E+ ++ ++   + G V+ ++ T NIL K+
Sbjct: 159 TFWKMKHS-GCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKA 217

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           +      ++   V+  MQ   F P +VTYN +   +       + EE   +++ R ++ +
Sbjct: 218 WCDHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEELIVEIQTR-VRTS 276

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             T+  ++  Y + G + +    ++Q++++  + +   FN ++  +  A D+  + ++  
Sbjct: 277 ERTWGIIIGGYCREGRLEEALRCVQQMKDAGSVPNVVIFNTLLKGFLDANDMAAVNKILG 336

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            MK+    PD +T++  +  +++LG      ++ +KMI
Sbjct: 337 LMKKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMI 374



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 155/325 (47%), Gaps = 5/325 (1%)

Query: 14  SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK 73
           SLL EV L+ G++P    + AL++A+ ++  + EA +T   MK  S C P   T++ LIK
Sbjct: 123 SLLAEVELA-GVRPDSIFFNALINAFVEAKRMGEAINTFWKMKH-SGCHPTTSTFNTLIK 180

Query: 74  SCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
                 + +  +++   M   G +  +  TYN ++  +   +  EE       M ++GG 
Sbjct: 181 GYGIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKM-QAGGF 239

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            PDI T N++ SAY N+    + E+   E     V+   +T  I+   Y R G  ++   
Sbjct: 240 EPDIVTYNTIASAYANNDETWRAEELIVEIQTR-VRTSERTWGIIIGGYCREGRLEEALR 298

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
            +  M+     P VV +N +++ F  A  +  + +    MK  G+KP+ +TY   ++ +S
Sbjct: 299 CVQQMKDAGSVPNVVIFNTLLKGFLDANDMAAVNKILGLMKKFGIKPDIVTYSHQLNTFS 358

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
             G + K   +  ++  + +  D   ++ +   + +A   EK  +L L M      P+ +
Sbjct: 359 SLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNVV 418

Query: 313 TFATMIQAYNALGMTEAAQNLENKM 337
           TF T+I  + ++   E+A  + +KM
Sbjct: 419 TFTTVISGWCSVADMESAMRVYDKM 443



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 151/329 (45%), Gaps = 4/329 (1%)

Query: 5   GKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           G   +PE++  +F++M  +G ++P++  Y  LV A+     L+EA+  +  M++    +P
Sbjct: 183 GIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQA-GGFEP 241

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+ TY+ +  +          E+++ E+    +  S  T+  II GY +  + EE     
Sbjct: 242 DIVTYNTIASAYANNDETWRAEELIVEIQTR-VRTSERTWGIIIGGYCREGRLEEALRCV 300

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ++G   P++   N+++  + ++ ++  + K        G+K DI T +    ++  
Sbjct: 301 QQMKDAGSV-PNVVIFNTLLKGFLDANDMAAVNKILGLMKKFGIKPDIVTYSHQLNTFSS 359

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   K   V D M +    P    Y+I+ + F +A   EK E+   +M H G+ PN +T
Sbjct: 360 LGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNVVT 419

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +++S +     +     +  ++  S V  +   F  +I  Y +     K  E+   M+
Sbjct: 420 FTTVISGWCSVADMESAMRVYDKMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQMMR 479

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQN 332
           E    P   T+  +  A+ A+G+TE   N
Sbjct: 480 ETGVKPKQSTYCLIADAWKAVGLTENINN 508



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 60/108 (55%), Gaps = 6/108 (5%)

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
           FK +   G KP+ +TY  L++A +   +   + S+L +VE + V  D+ FFN +I+A+ +
Sbjct: 90  FKHLMDEGHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVE 149

Query: 289 AGDVEKMGE---LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           A   ++MGE    F  MK   C P   TF T+I+ Y  +G  E +Q +
Sbjct: 150 A---KRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRV 194



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 9/173 (5%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G K  + T  IL  +     M++ + S++  ++     P  + +N +I  F +A  + + 
Sbjct: 97  GHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALINAFVEAKRMGEA 156

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR-----QVENSDVILDTPFFN 280
              F KMKH G  P + T+ +L+  Y   G++ K +   R      VE S V  +   +N
Sbjct: 157 INTFWKMKHSGCHPTTSTFNTLIKGY---GIVGKPEESQRVFDMMGVEGS-VRPNLTTYN 212

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            ++ A+    ++E+   +   M+     PD +T+ T+  AY     T  A+ L
Sbjct: 213 ILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEEL 265


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 157/318 (49%), Gaps = 8/318 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+Q +  +A  LF+ M+   + P+V +YT L+        + EA S    M++ S   
Sbjct: 202 GCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRN-SGML 260

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P++YTY+ ++    K        ++  EM   G+  + VT+  +IDG  K    +EM S+
Sbjct: 261 PNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKT---DEMVSA 317

Query: 123 FSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
              +++  S G  P+IF  N +I  Y  +GN+ +    ++E     +  D+ T +IL K 
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKG 377

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                  ++   ++  M+K+ F P  VTYN +I+ + K G++EK  E   +M  +G++PN
Sbjct: 378 LCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            IT+ +L+  Y KAG +     +  ++    ++ D   +  +I  + + G+ ++   L  
Sbjct: 438 IITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHK 497

Query: 301 TMKERHCVPDNITFATMI 318
            M+E    P+  T + +I
Sbjct: 498 EMQEAGLHPNVFTLSCLI 515



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 143/318 (44%), Gaps = 2/318 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M++ G  P+V  Y  L+    + G   +AF   ++M       P V  Y+ILI+      
Sbjct: 184 MVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIE-KKIFPTVVIYTILIRGLCGES 242

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           R    E +   M   G+  +  TYNT++DGY K    ++    +  M+   G  P++ T 
Sbjct: 243 RISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEML-GDGLLPNVVTF 301

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
             +I     +  +    K+  +    GV  +I   N L   Y +AG   +  S+   ++K
Sbjct: 302 GILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEK 361

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
               P V TY+I+I+       +E+ +   ++MK +G  PN++TY +L+  Y K G + K
Sbjct: 362 HEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEK 421

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +  Q+    +  +   F+ +I  Y +AG +E    L+  M  +  +PD + +  +I 
Sbjct: 422 AIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALID 481

Query: 320 AYNALGMTEAAQNLENKM 337
            +   G T+ A  L  +M
Sbjct: 482 GHFKDGNTKEAFRLHKEM 499



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 8/315 (2%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P++     ++    + G  D  +    DM +     P+V TY  LI  C +   F    +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVA-RGASPNVVTYGTLIDGCCRQGDFLKAFR 214

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  EM    I  + V Y  +I G     +  E ES F  M  SG   P+++T N+M+  Y
Sbjct: 215 LFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGML-PNLYTYNTMMDGY 273

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF--- 203
               +++K  + Y E    G+  ++ T  IL     +    D+M S   F+     F   
Sbjct: 274 CKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKT---DEMVSARKFLIDMASFGVV 330

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P +  YN +I+ + KAG++ +      +++   + P+  TY  L+        + + D +
Sbjct: 331 PNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGL 390

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           L++++    + +   +N +I  Y + G++EK  E+   M E+   P+ ITF+T+I  Y  
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450

Query: 324 LGMTEAAQNLENKMI 338
            G  EAA  L  +M+
Sbjct: 451 AGKMEAAMGLYTEMV 465



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 130/289 (44%), Gaps = 2/289 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  +F  M + G+ P++  Y  ++  Y +   + +A     +M       P+V T+ IL
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLG-DGLLPNVVTFGIL 304

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I    K        K L +M+  G+  +   YN +IDGY KA    E  S  S  +E   
Sbjct: 305 IDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSE-IEKHE 363

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PD+FT + +I        +E+ +    E    G   +  T N L   Y + G  +K  
Sbjct: 364 ILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAI 423

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
            V   M ++   P ++T++ +I+ + KAG +E     + +M  +G+ P+ + Y +L+  +
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH 483

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            K G   +   + ++++ + +  +    +C+I    + G +    +LFL
Sbjct: 484 FKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFL 532



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 5/192 (2%)

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           +ES    P++F +  +I A+   G +E+    Y +   M V   +Q  N++     + G 
Sbjct: 119 LESSKFTPNVFGV--LIIAFSEMGLVEEALWVYYK---MDVLPAMQACNMVLDGLVKKGR 173

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           +D M  V   M  R   P VVTY  +I+   + G   K    F +M  + + P  + Y  
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+        I + +S+ R + NS ++ +   +N ++  Y +   V+K  EL+  M    
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDG 293

Query: 307 CVPDNITFATMI 318
            +P+ +TF  +I
Sbjct: 294 LLPNVVTFGILI 305



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 12/207 (5%)

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
           A+V + G  P IF   S+IS Y  +GN+      +N F+ +  K  I   ++++ +Y   
Sbjct: 655 ALVINFGFEPIIFLQTSLISMYSATGNVADA---HNMFDEIPSKNLISWTSVIS-AYVDN 710

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              +K   +   MQ     P +VT  + +      G ++  E     ++HRG+  +    
Sbjct: 711 QRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLN 770

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            SL++ YSK G I            S V+ +   F  ++ A   AG VE+  + F +MKE
Sbjct: 771 NSLINMYSKCGEIGTARRF------SLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKE 824

Query: 305 RHCVPDNIT-FATMIQAYNALG-MTEA 329
            + +   I+ F  M+      G +TEA
Sbjct: 825 DYSLRPRISHFGCMVDLLCRAGLLTEA 851


>gi|242061532|ref|XP_002452055.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
 gi|241931886|gb|EES05031.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
          Length = 810

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 11/323 (3%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           + E M   G KP    Y+ALV+A  + G +D+A   +  +      KP+   Y  ++K  
Sbjct: 362 VVEQMPKYGCKPDNFTYSALVNALSERGCVDDALELLRTIPW----KPNTVCYRSVLKGL 417

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            +  R+D + K++AEM    +    VT+  IID   +    +        M + G C PD
Sbjct: 418 CRADRWDDVGKLVAEMIRNQLNLDEVTFGLIIDCLCQKGLVDYGAEVLREMTKFG-CSPD 476

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I   NS+I+ +  +G+++   +    F  M  K ++ T N + K   RA  ++    ++ 
Sbjct: 477 IIIYNSLINGFSENGSVDDALEL---FKNMSCKRNVVTYNYMLKGLCRAEQWEDAGKLVA 533

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M K    P  VT++ +I    + G +E   E F+KM      PN I Y +L++  S   
Sbjct: 534 EMVKDECLPNEVTFSTLISYLCQKGFVECAIEVFEKMPKYNCMPNVIIYSTLINGLSDQE 593

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
               VD  L+ + +     DT  ++  +    +A   E  GEL L M  ++C+PD +TF+
Sbjct: 594 C---VDDALKLLNDMPCKPDTICYSAALKGLCRAERWEDAGELILEMIRKNCLPDEVTFS 650

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
            +I      G  E+A  +   M+
Sbjct: 651 ILINNLCHKGFLESATEVSELML 673



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 151/370 (40%), Gaps = 42/370 (11%)

Query: 2   VMLGKCKQPEQASLLFEVMLSDGLKPSVDV--YTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G C+   + +    ++ S  L  S DV  Y  LV+ Y + G L++A   + DM    
Sbjct: 142 LVAGYCRAGGRLADAERMLASLALSGSADVVTYNTLVAGYCREGRLNDARRLVADMPFA- 200

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P+ YT S L+K       +D  E++L+EM   G   + +T+  II    +    +  
Sbjct: 201 ---PNSYTNSTLLKGLCSNKEWDDAEELLSEMIRSGCPPNDLTFGMIIHSLCQNGLADRA 257

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                 M +   C   +   N +IS     G +E+     + F+ M  K DI + N + K
Sbjct: 258 MGVLDQMSKCR-CTRGVIVYNEIISCLAELGRVEEA---LHLFDQMPCKPDIFSYNTVMK 313

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              R G ++   +++  M ++   P  VT+N VI      G ++   E  ++M   G KP
Sbjct: 314 GLCRDGRWEDAGTLIAGMVRKDCPPDEVTFNTVISYLCHRGLVDCAMEVVEQMPKYGCKP 373

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVE------------------------------- 268
           ++ TY +LV+A S+ G +     +LR +                                
Sbjct: 374 DNFTYSALVNALSERGCVDDALELLRTIPWKPNTVCYRSVLKGLCRADRWDDVGKLVAEM 433

Query: 269 -NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
             + + LD   F  II    Q G V+   E+   M +  C PD I + ++I  ++  G  
Sbjct: 434 IRNQLNLDEVTFGLIIDCLCQKGLVDYGAEVLREMTKFGCSPDIIIYNSLINGFSENGSV 493

Query: 328 EAAQNLENKM 337
           + A  L   M
Sbjct: 494 DDALELFKNM 503



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 141/316 (44%), Gaps = 15/316 (4%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G  P + +Y +L++ + ++G +D+A     +M     CK +V TY+ ++K   +  +++ 
Sbjct: 472 GCSPDIIIYNSLINGFSENGSVDDALELFKNMS----CKRNVVTYNYMLKGLCRAEQWED 527

Query: 84  IEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
             K++AEM  +  EC  + VT++T+I  Y   K F E        +    C P++   ++
Sbjct: 528 AGKLVAEM--VKDECLPNEVTFSTLI-SYLCQKGFVECAIEVFEKMPKYNCMPNVIIYST 584

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I+   +   ++   K  N+   M  K D    +   K   RA  ++    ++  M ++ 
Sbjct: 585 LINGLSDQECVDDALKLLND---MPCKPDTICYSAALKGLCRAERWEDAGELILEMIRKN 641

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
             P  VT++I+I      G +E   E  + M      PN   Y SL++ +++     + +
Sbjct: 642 CLPDEVTFSILINNLCHKGFLESATEVSELMLKYECMPNVFIYSSLINGFAEQ---YRAE 698

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             L+ + N     DT  ++  +    +A   E   EL   M  + C  D  TF+ +I + 
Sbjct: 699 DALQLLRNMPCEPDTICYSAALKGLCRAKRWEDARELIAEMFRKQCPLDEATFSMLIGSL 758

Query: 322 NALGMTEAAQNLENKM 337
              G+ + A  +  +M
Sbjct: 759 CQNGLVDMATEVFEQM 774



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 127/316 (40%), Gaps = 40/316 (12%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA-KKFEEME 120
           +P     ++LIK      R D  E++L      G    AVT NT++ GY +A  +  + E
Sbjct: 99  RPAAVPCTLLIKKLCAAGRLDDAERVLGASERAGTA-DAVTRNTLVAGYCRAGGRLADAE 157

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK----------------------- 157
              +++  SG    D+ T N++++ Y   G +    +                       
Sbjct: 158 RMLASLALSGS--ADVVTYNTLVAGYCREGRLNDARRLVADMPFAPNSYTNSTLLKGLCS 215

Query: 158 ---WYNEFNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
              W +   L+      G   +  T  ++  S  + G+ D+   V+D M K      V+ 
Sbjct: 216 NKEWDDAEELLSEMIRSGCPPNDLTFGMIIHSLCQNGLADRAMGVLDQMSKCRCTRGVIV 275

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +I    + G +E+    F +M     KP+  +Y +++    + G      +++  + 
Sbjct: 276 YNEIISCLAELGRVEEALHLFDQMP---CKPDIFSYNTVMKGLCRDGRWEDAGTLIAGMV 332

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
             D   D   FN +IS     G V+   E+   M +  C PDN T++ ++ A +  G  +
Sbjct: 333 RKDCPPDEVTFNTVISYLCHRGLVDCAMEVVEQMPKYGCKPDNFTYSALVNALSERGCVD 392

Query: 329 AAQNLENKMIAMKENS 344
            A  L  + I  K N+
Sbjct: 393 DALELL-RTIPWKPNT 407



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 8/243 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  +FE M      P+V +Y+ L++       +D+A   +NDM     CKPD   YS 
Sbjct: 561 ECAIEVFEKMPKYNCMPNVIIYSTLINGLSDQECVDDALKLLNDMP----CKPDTICYSA 616

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
            +K   +  R++   +++ EM         VT++ +I+     K F E  +  S ++   
Sbjct: 617 ALKGLCRAERWEDAGELILEMIRKNCLPDEVTFSILINNLCH-KGFLESATEVSELMLKY 675

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C P++F  +S+I+ +       + E        M  + D    +   K   RA  ++  
Sbjct: 676 ECMPNVFIYSSLINGFAEQ---YRAEDALQLLRNMPCEPDTICYSAALKGLCRAKRWEDA 732

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R ++  M ++       T++++I +  + G ++   E F++M   G  PN   + SLV+ 
Sbjct: 733 RELIAEMFRKQCPLDEATFSMLIGSLCQNGLVDMATEVFEQMSVYGCSPNRKIHSSLVNG 792

Query: 251 YSK 253
           YS+
Sbjct: 793 YSE 795


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 153/328 (46%), Gaps = 4/328 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F+ ML  G  PSV  Y+ L+ A  +     +A + +++M++   C+PD+ TY++LI + 
Sbjct: 273 VFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRA-KGCEPDIVTYNVLINAM 331

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                 D    IL+ +   G +  AVTY  ++     +++++E+E   + M  S  C PD
Sbjct: 332 CNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMT-SNNCAPD 390

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             T N+++++    G +++  +  +  +  G  ADI T + +       G  D    ++ 
Sbjct: 391 EVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLS 450

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            ++     P  + Y  V++        E+ EE   +M      P+ +T+ ++V++  + G
Sbjct: 451 RLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKG 510

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
           L+ +   ++ Q+  +    D   +NCII        ++   EL   ++   C PD +TF 
Sbjct: 511 LVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFN 570

Query: 316 TMIQAYNALGMTEAAQNLENKMIAMKEN 343
           T+++    +   E A+ L   M  M+ N
Sbjct: 571 TLLKGLCGVDRWEDAEQLMANM--MRSN 596



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 162/374 (43%), Gaps = 39/374 (10%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++   CK+    QA  L + M + G +P +  Y  L++A    G +DEA + ++++ S 
Sbjct: 291 ILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPS- 349

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM--------------------------- 91
             CKPD  TY+ ++KS     R+  +E++LAEM                           
Sbjct: 350 HGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDR 409

Query: 92  --------SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
                   S  G     VTY++I+DG     + ++     S + +S GC PD     +++
Sbjct: 410 AIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRL-KSYGCKPDTIAYTTVL 468

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
               ++   E+ E+   E        D  T N +  S  + G+ D+   V++ M +    
Sbjct: 469 KGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCS 528

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P +VTYN +I+       I+   E    ++  G KP+ +T+ +L+            + +
Sbjct: 529 PDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQL 588

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           +  +  S+   D   FN +I++  Q G + +  E    M E  CVP++ T++ ++ A   
Sbjct: 589 MANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLK 648

Query: 324 LGMTEAAQNLENKM 337
            G  +AA  L + M
Sbjct: 649 AGKAQAALELLSGM 662



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 156/334 (46%), Gaps = 6/334 (1%)

Query: 2   VMLGKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C  +Q E+A  L   ML     P    +  +V++  Q GL+D A   +  M S +
Sbjct: 467 VLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQM-SEN 525

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C PD+ TY+ +I         D   ++L+++   G +   VT+NT++ G     ++E+ 
Sbjct: 526 GCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDA 585

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E   + M+ S  C PD  T N++I++    G + +  +        G   +  T +I+  
Sbjct: 586 EQLMANMMRSN-CPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVD 644

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +  +AG       ++  M      P ++TYN VI    KAG +E+  +  + M   G+ P
Sbjct: 645 ALLKAGKAQAALELLSGMTN--GTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCP 702

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           ++ TY SL     +     +   +LR+V+++ +  DT F+N ++  + +    +   + F
Sbjct: 703 DTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCF 762

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
             M    C+PD  T+  +++A    G+ + A+ L
Sbjct: 763 AHMVSSGCMPDESTYVILLEALAYGGLLDEAKRL 796



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 143/299 (47%), Gaps = 10/299 (3%)

Query: 41  QSGLLDEAFSTINDMKSVS--DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC 98
           Q G +DEA    + M S    +C P V   +ILIK      R    E++ A    LG   
Sbjct: 162 QRGEIDEALVLFDSMASGGGRNCPP-VVPCNILIKRLCSDGRVSDAERVFAA---LGPSA 217

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           + VTYNT+++GY +A + E+     + M       PD FT N +I A    G I      
Sbjct: 218 TVVTYNTMVNGYCRAGRIEDARRLINGMPFP----PDTFTFNPLIRALCVRGRIPDALAV 273

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
           +++    G    + T +IL  +  +   Y +  +++D M+ +   P +VTYN++I     
Sbjct: 274 FDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCN 333

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
            G +++       +   G KP+++TY  ++ +   +    +V+ +L ++ +++   D   
Sbjct: 334 EGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVT 393

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           FN I+++  Q G V++  E+   M E  CV D +T+++++     +G  + A  L +++
Sbjct: 394 FNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRL 452



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 2/293 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
            P    +  L+ A    G + +A +  +DM     C P V TYSIL+ +  K   +    
Sbjct: 248 PPDTFTFNPLIRALCVRGRIPDALAVFDDMLH-RGCSPSVVTYSILLDATCKESGYRQAM 306

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +L EM   G E   VTYN +I+        +E  +  S +  S GC PD  T   ++ +
Sbjct: 307 ALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNL-PSHGCKPDAVTYTPVLKS 365

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
              S   +++E+   E        D  T N +  S  + G+ D+   V+D M +      
Sbjct: 366 LCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVAD 425

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           +VTY+ +++     G ++   E   ++K  G KP++I Y +++          + + ++ 
Sbjct: 426 IVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMA 485

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           ++  SD   D   FN ++++  Q G V++   +   M E  C PD +T+  +I
Sbjct: 486 EMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCII 538



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 136/307 (44%), Gaps = 4/307 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  + + M   G    +  Y++++      G +D+A   ++ +KS   CKPD   Y+ 
Sbjct: 408 DRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYG-CKPDTIAYTT 466

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++K      +++  E+++AEM         VT+NT++    +    +        M E+G
Sbjct: 467 VLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENG 526

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
            C PDI T N +I    N   I+   +  ++    G K DI T N L K       ++  
Sbjct: 527 -CSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDA 585

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +M  M +    P  +T+N VI +  + G + +  E  K M   G  PNS TY  +V A
Sbjct: 586 EQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDA 645

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             KAG       +L  + N    L T  +N +IS   +AG +E+  +L   M      PD
Sbjct: 646 LLKAGKAQAALELLSGMTNGTPDLIT--YNTVISNLTKAGKMEEALDLLRVMVSNGLCPD 703

Query: 311 NITFATM 317
             T+ ++
Sbjct: 704 TTTYRSL 710



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 113/289 (39%), Gaps = 39/289 (13%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  + E M  +G  P +  Y  ++        +D+A   ++D++S   CKPD+ T++ 
Sbjct: 513 DRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCG-CKPDIVTFNT 571

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+K      R++  E+++A M         +T+NT+I    +     +   +   M E+G
Sbjct: 572 LLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENG 631

Query: 131 GCH--------------------------------PDIFTLNSMISAYGNSGNIEKMEKW 158
                                              PD+ T N++IS    +G   KME+ 
Sbjct: 632 CVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVISNLTKAG---KMEEA 688

Query: 159 YNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
            +   +M   G+  D  T   L     R    D+   ++  +Q     P    YN V+  
Sbjct: 689 LDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLG 748

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
           F +    +   + F  M   G  P+  TY  L+ A +  GL+ +   +L
Sbjct: 749 FCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLL 797



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 3/156 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA+L     +++G  P +  Y  ++S   ++G ++EA   +  M S   C PD  TY  L
Sbjct: 653 QAALELLSGMTNG-TPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLC-PDTTTYRSL 710

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
                +    D   ++L  +   G+      YN ++ G+ + ++ +     F+ MV S G
Sbjct: 711 AYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMV-SSG 769

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 167
           C PD  T   ++ A    G +++ ++       +GV
Sbjct: 770 CMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGV 805


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 162/385 (42%), Gaps = 57/385 (14%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD----- 60
           K KQ  QA+ +F  M+  G +P+   Y ALV    ++G + +AF     +   SD     
Sbjct: 370 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 429

Query: 61  ----CK------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
               C+      P+V TY  L+    K H+ D   ++L  M   G E + + Y+ +IDG+
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 489

Query: 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
            KA K +  +  F  M + G   P + T  S+I      G ++   K  ++        +
Sbjct: 490 CKAGKIDSAQEVFLQMTKCGYL-PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           + T   +     R G  +K   ++  M+++   P VVTY  +I+  GKAG I+   + F 
Sbjct: 549 VVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFT 608

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVD----------------------------- 261
           +M  +G  PN +TY  L++    AGL+ K                               
Sbjct: 609 QMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSF 668

Query: 262 ----SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-----DNI 312
                IL ++E+   +   P +  +I  + +AG +E   EL   M E   VP     DN 
Sbjct: 669 IASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME---VPSSVKTDND 725

Query: 313 TFATMIQAYNALGMTEAAQNLENKM 337
            +A++IQA       E A  L ++M
Sbjct: 726 MYASLIQALCLASQVEEAFRLYSEM 750



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 156/378 (41%), Gaps = 53/378 (14%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L + M+  G  P    Y+ +++    +  +++AF    +MK V    PDVYTY+I
Sbjct: 270 DKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVG-VTPDVYTYTI 328

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S  K    +  + +  EM  +G   + VTY  +I  Y KAK+  +    F  MV++G
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD----------------IQTL 174
            C P+  T  +++     +GNI K  + Y +       AD                + T 
Sbjct: 389 -CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTY 447

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
             L     +A   D    ++D M      P  + Y+ +I+ F KAG I+  +E F +M  
Sbjct: 448 GALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 507

Query: 235 RG------------------------MK-----------PNSITYCSLVSAYSKAGLIMK 259
            G                        MK           PN +TY +++    + G   K
Sbjct: 508 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEK 567

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +L  +E      +   +  +I   G+AG ++   +LF  M  + C P+ +T+  +I 
Sbjct: 568 ALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLIN 627

Query: 320 AYNALGMTEAAQNLENKM 337
              A G+ + A+ L  +M
Sbjct: 628 HLCAAGLLDKARLLLGEM 645



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 157/357 (43%), Gaps = 40/357 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG CK+      +  +M+++G  P+  ++ +LV +Y        A+  +N M +   C P
Sbjct: 158 LGWCKR------IINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG-CPP 210

Query: 64  DVYTYSILIKSCTKFHRF------DLIEKILAEMSYLGIEC-----SAVTYNTIIDGYGK 112
               Y+I I S     +       DL EKI  EM  L   C     +   +   + G GK
Sbjct: 211 GYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEM--LAANCVLNKVNVANFARCLCGVGK 268

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
              F++       M+  G   PD  T + +I+   ++  +EK    + E  ++GV  D+ 
Sbjct: 269 ---FDKAFQLIKEMMRKGFV-PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVY 324

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T  IL  S+ +AG+ ++ + + + M+     PTVVTY  +I  + KA  + +  + F +M
Sbjct: 325 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 384

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF-FNC---------- 281
              G +PN +TY +LV    KAG I K   +  ++  +    D+ F F C          
Sbjct: 385 VDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNV 444

Query: 282 -----IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                ++    +A  V+   EL   M    C P++I +  +I  +   G  ++AQ +
Sbjct: 445 VTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 152/349 (43%), Gaps = 19/349 (5%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           CK+   A  L +++  +  K    + T ++S   ++   DEA S ++ M+  S C P+V 
Sbjct: 86  CKEGRWADAL-DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNS-CIPNVV 143

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY  L+    K  +    ++I+  M   G   +   +N+++  Y   K +       + M
Sbjct: 144 TYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRM 203

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKM---------EKWYNEFNLMGVKADIQTLNI- 176
             + GC P     N  I   G+    EK+         EK Y E  ++     +  +N+ 
Sbjct: 204 T-TCGCPPGYVVYNIFI---GSICGQEKLPSPDLLDLAEKIYGE--MLAANCVLNKVNVA 257

Query: 177 -LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
              +     G +DK   ++  M ++ F P   TY+ VI     A  +EK    F++MK  
Sbjct: 258 NFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMV 317

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G+ P+  TY  L+ ++ KAGLI +   +  ++ +         +  +I AY +A  V + 
Sbjct: 318 GVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQA 377

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
            ++F  M +  C P+++T+  ++      G    A  +  K+I   +++
Sbjct: 378 NDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSA 426



 Score = 44.7 bits (104), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
           + P+ VTYN +++    AG ++      K+M   G   +  T      A  K G   +  
Sbjct: 36  YRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEG---RWA 92

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             L  +E  D  LDT     +IS   +A   ++       M+   C+P+ +T+ T++  +
Sbjct: 93  DALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGF 152



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 4/187 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + + +  LF  M   G  P+   Y  L++    +GLLD+A   + +MK     K 
Sbjct: 594 LGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKY 653

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-EMESS 122
            +  Y   I+  +K   F     IL EM   G    A  Y  +ID + KA + E  ME  
Sbjct: 654 -LQGYRCAIQGFSK--SFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELH 710

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M        D     S+I A   +  +E+  + Y+E    G   ++     L K   
Sbjct: 711 KEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLV 770

Query: 183 RAGMYDK 189
               +D+
Sbjct: 771 EVKKWDE 777


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 153/342 (44%), Gaps = 6/342 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K +  + A  +FE M       +   Y  ++S   +SG ++EAF    +M       PD 
Sbjct: 257 KARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYG-LSPDA 315

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           +TY  L+    K  R    + +L EMS  G++ + V Y T++DG+ K  K  E     + 
Sbjct: 316 FTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNE 375

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M+ S G  P+    +++I      G + +  K  NE   +G + D  T + L + + +  
Sbjct: 376 MI-SAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHY 434

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D    +++ M+     P   TY I+I    + G  ++     ++M   G+KPN+  Y 
Sbjct: 435 DKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYA 494

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            L+  +SK G I      L  +  ++V+ D   +N +I      G +E+  E +  +++R
Sbjct: 495 PLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKR 554

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347
             VPD  T++ +I  Y      E A  L  +M+    NSG K
Sbjct: 555 GLVPDEFTYSGLIHGYCKTRNLEKADQLLQQML----NSGLK 592



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 148/324 (45%), Gaps = 12/324 (3%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G CK  + ++A  L + M   GLKP+V VY  LV  + + G   EAF  +N+M S  
Sbjct: 321 LMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAG 380

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG----YGKAKK 115
             +P+   Y  LI+   K  +     K+L EM  +G      TY+ ++ G    Y K   
Sbjct: 381 -VQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGA 439

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           FE +       + + G  P+ +T   MI+    +G  ++      E    G+K +     
Sbjct: 440 FELLNE-----MRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYA 494

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L   + + G        ++ M K    P +  YN +I+     G IE+ EEY+ +++ R
Sbjct: 495 PLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKR 554

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G+ P+  TY  L+  Y K   + K D +L+Q+ NS +  +   +  ++  Y ++ D EK+
Sbjct: 555 GLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKV 614

Query: 296 GELFLTMKERHCVPDNITFATMIQ 319
             +  +M      PDN  +  +I+
Sbjct: 615 SSILQSMLGSGDKPDNHIYGIVIR 638



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 164/373 (43%), Gaps = 44/373 (11%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  E  +A  L E M+S+GLKP+  +Y  L+  + + G +  A  ++ +M + ++  
Sbjct: 464 GLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENM-TKANVL 522

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD++ Y+ LIK  +   R +  E+  A++   G+     TY+ +I GY K +  E+ +  
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQL 582

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+ SG   P+  T   ++  Y  S + EK+          G K D     I+ ++  
Sbjct: 583 LQQMLNSG-LKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLS 641

Query: 183 RA---------------------------------GMYDKMRSV--MDFMQKRFFFPTVV 207
           R+                                  M D  ++V  +D M K    P +V
Sbjct: 642 RSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIV 701

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
            YN +I+ F ++G I +    F  +  +G+ PN +TY +L+    K G I     + + +
Sbjct: 702 CYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDM 761

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT--MKERHCVPDNITFATMIQAYNALG 325
            +  +  D   +N + +    A D+E+   LFLT  M  R     ++ F+T+++ +   G
Sbjct: 762 LDRGIAPDAFVYNVLATGCSDAADLEQ--ALFLTEEMFNRGYAHVSL-FSTLVRGFCKRG 818

Query: 326 MTEAAQNLENKMI 338
             +  + L + M+
Sbjct: 819 RLQETEKLLHVMM 831



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 151/340 (44%), Gaps = 4/340 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  Q  +AS L   M+  G +P    Y  L+  + Q    D AF  +N+M++ S
Sbjct: 391 LIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRN-S 449

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              P+ YTY I+I    +         +L EM   G++ +A  Y  +I G+ K       
Sbjct: 450 GILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLA 509

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
             S   M ++    PD+F  NS+I      G IE+ E++Y +    G+  D  T + L  
Sbjct: 510 CESLENMTKAN-VLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIH 568

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            Y +    +K   ++  M      P   TY  ++E + K+   EK+    + M   G KP
Sbjct: 569 GYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKP 628

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           ++  Y  ++   S++  +     +L +VE + ++ D   ++ +IS   +  D+EK   L 
Sbjct: 629 DNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLL 688

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
             M +    P  + +  +I  +   G    A+N+ + ++A
Sbjct: 689 DEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILA 728



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 140/305 (45%), Gaps = 2/305 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L   M + G+ P+   Y  +++   Q+G   EA + + +M S    KP+ + Y+ LI   
Sbjct: 442 LLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMIS-EGLKPNAFMYAPLIIGH 500

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
           +K     L  + L  M+   +      YN++I G     + EE E  + A V+  G  PD
Sbjct: 501 SKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYY-AQVQKRGLVPD 559

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
            FT + +I  Y  + N+EK ++   +    G+K +  T   L + Y ++  ++K+ S++ 
Sbjct: 560 EFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQ 619

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M      P    Y IVI    ++ ++E       +++  G+ P+   Y SL+S   K  
Sbjct: 620 SMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMA 679

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            + K   +L ++    +      +N +I  + ++GD+ +   +F ++  +  +P+ +T+ 
Sbjct: 680 DMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYT 739

Query: 316 TMIQA 320
            +I  
Sbjct: 740 ALIDG 744



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 127/278 (45%), Gaps = 10/278 (3%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDVYTYS  +++  K   FD  +K+  EM       + VTYN +I G  ++   EE    
Sbjct: 243 PDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGF 302

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              MV+  G  PD FT  ++++     G +++ +   +E +  G+K ++     L   + 
Sbjct: 303 KEEMVDY-GLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFM 361

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   +   +++ M      P  + Y+ +I    K G + +  +   +M   G +P++ 
Sbjct: 362 KEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTF 421

Query: 243 TYCSLVSA----YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           TY  L+      Y K G       +L ++ NS ++ +   +  +I+   Q G+ ++ G L
Sbjct: 422 TYHPLMQGHFQHYDKDGAF----ELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNL 477

Query: 299 FLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLEN 335
              M      P+   +A +I  ++  G ++ A ++LEN
Sbjct: 478 LEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLEN 515



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 136/316 (43%), Gaps = 4/316 (1%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           V   LV  Y ++G +  A   +  M  +    P     + L+K   +    +L+ K+   
Sbjct: 177 VLDVLVDTYKKNGSVRTAAQVVLMMGDLG-LAPTRRCCNGLLKDLLRADAMELVWKLKGF 235

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M   GI     TY+T ++ + KA+ F+  +  F  M     C  +  T N MIS    SG
Sbjct: 236 MEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRR-DCAMNEVTYNVMISGLCRSG 294

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            +E+   +  E    G+  D  T   L     + G   + ++++D M      P VV Y 
Sbjct: 295 AVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYA 354

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +++ F K G   +  +   +M   G++PN I Y +L+    K G + +   +L ++   
Sbjct: 355 TLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKV 414

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
               DT  ++ ++  + Q  D +   EL   M+    +P+  T+  MI      G ++ A
Sbjct: 415 GHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEA 474

Query: 331 QNLENKMIA--MKENS 344
            NL  +MI+  +K N+
Sbjct: 475 GNLLEEMISEGLKPNA 490



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 131/298 (43%), Gaps = 38/298 (12%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K +  E+A  L + ML+ GLKP+ D YT L+  Y +S   ++  S +  M    D KPD 
Sbjct: 572 KTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGD-KPDN 630

Query: 66  YTYSILIKSCTKFHRFDL-------IEK----------------------------ILAE 90
           + Y I+I++ ++    ++       +EK                            +L E
Sbjct: 631 HIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDE 690

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M+  G+E   V YN +IDG+ ++       + F +++ + G  P+  T  ++I     +G
Sbjct: 691 MAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSIL-AKGLLPNCVTYTALIDGNCKNG 749

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           +I      Y +    G+  D    N+L      A   ++   + + M  R +   V  ++
Sbjct: 750 DITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY-AHVSLFS 808

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
            ++  F K G +++ E+    M  R + PN+ T  ++++ + KAG + +   +  +++
Sbjct: 809 TLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQ 866



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/260 (20%), Positives = 111/260 (42%), Gaps = 5/260 (1%)

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
           +++  M  LG+  +    N ++    +A   E +       +E  G  PD++T ++ + A
Sbjct: 196 QVVLMMGDLGLAPTRRCCNGLLKDLLRADAME-LVWKLKGFMEGAGIPPDVYTYSTFLEA 254

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           +  + + +  +K + E        +  T N++     R+G  ++     + M      P 
Sbjct: 255 HCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPD 314

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
             TY  ++    K G +++ +    +M   G+KPN + Y +LV  + K G   +   IL 
Sbjct: 315 AFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILN 374

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++ ++ V  +   ++ +I    + G + +  +L   M +    PD  T+  ++Q +    
Sbjct: 375 EMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHY 434

Query: 326 MTEAAQNLENKMIAMKENSG 345
             + A  L N+M     NSG
Sbjct: 435 DKDGAFELLNEM----RNSG 450


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 157/340 (46%), Gaps = 19/340 (5%)

Query: 8   KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
           K+ + A   F   L   + P +  +  ++S   + G L +A     D+K+     P V T
Sbjct: 170 KRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWG-LAPSVAT 228

Query: 68  YSILIKS-CTKFHRFDL--IEKILAEMSYLGIECSAVTYNTIIDGYGK-------AKKFE 117
           Y+ LI   C K    ++  ++ +L EM   GI  +AVT+  +I+GY K        + FE
Sbjct: 229 YNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFE 288

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           EM+          G    + T NS+IS   + G +E+  K   E   +G+  +  T   +
Sbjct: 289 EMKQQ--------GIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCV 340

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            K + + GM       +D M +R   P VV Y I+I+ + + G +E      + M  +G+
Sbjct: 341 LKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGI 400

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
            PN  TY  L++ +S++G       +L +++   +  D   +N +I A    G+V K  +
Sbjct: 401 SPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVK 460

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           L   M E    P+++T+ T+IQ +   G  ++A  +  +M
Sbjct: 461 LLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRM 500



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 148/341 (43%), Gaps = 5/341 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           V+ G C+  Q  +A  + + + + GL PSV  Y +L+  Y + G     +     +K + 
Sbjct: 197 VISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMV 256

Query: 60  DC--KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           +    P   T+ +LI    K        ++  EM   GI  S VTYN++I G     K E
Sbjct: 257 EAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVE 316

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E       M E  G  P+  T   ++  +   G +     W +      V+ D+    IL
Sbjct: 317 EGVKLMEEM-EDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTIL 375

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              Y R G  +   +V + M K+   P V TYN +I  F ++G          +MK +G+
Sbjct: 376 IDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGI 435

Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
           + + +TY  L+ A    G + K   +L ++    +  +   +N II  +   G+++   E
Sbjct: 436 EADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYE 495

Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +   M++     + +T+   I+ +  +G  + A +L N+M+
Sbjct: 496 IRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEML 536



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 131/303 (43%), Gaps = 2/303 (0%)

Query: 15  LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 74
           +L + M+  G+ P+   +  L++ Y ++     A     +MK        V TY+ LI  
Sbjct: 250 MLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQ-QGIAASVVTYNSLISG 308

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
                + +   K++ EM  LG+  + +T+  ++ G+ K     +       M E     P
Sbjct: 309 LCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN-VEP 367

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           D+     +I  Y   G +E            G+  ++ T N L   + R+G +     ++
Sbjct: 368 DVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLL 427

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M+++     VVTYN++I      G + K  +   +M   G++PN +TY +++  +   
Sbjct: 428 DEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDK 487

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           G I     I  ++E      +   +N  I  + Q G +++  +L   M ++  VP+ IT+
Sbjct: 488 GNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITY 547

Query: 315 ATM 317
            T+
Sbjct: 548 ETI 550



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 120/279 (43%), Gaps = 4/279 (1%)

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           +P   + + L+       R DL EK         +     T+NT+I G  +  +  +   
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRK-AG 211

Query: 122 SFSAMVESGGCHPDIFTLNSMISAY---GNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             +  +++ G  P + T NS+I  Y   G +GN+  ++    E    G+     T  +L 
Sbjct: 212 DVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLI 271

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             Y +         V + M+++    +VVTYN +I      G +E+  +  ++M+  G+ 
Sbjct: 272 NGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLS 331

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN IT+  ++  + K G++   +  +  +   +V  D   +  +I  Y + G +E    +
Sbjct: 332 PNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAV 391

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              M ++   P+  T+  +I  ++  G   +A  L ++M
Sbjct: 392 KEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 7/223 (3%)

Query: 122 SFSAMVESGGCHP----DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           ++ A + +G  HP       ++N++++    +  ++  EK +       V  DI T N +
Sbjct: 138 AYDAFLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTV 197

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF---GKAGHIEKMEEYFKKMKH 234
                R G   K   V   ++     P+V TYN +I+ +   G AG++  ++   K+M  
Sbjct: 198 ISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVE 257

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
            G+ P ++T+  L++ Y K         +  +++   +      +N +IS     G VE+
Sbjct: 258 AGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEE 317

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             +L   M++    P+ ITF  +++ +   GM   A +  + M
Sbjct: 318 GVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGM 360


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 153/322 (47%), Gaps = 2/322 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A +L + M+ +G +P V  Y ++V+   +SG    A   +  M+   + K DV+TYS +
Sbjct: 166 EAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEE-RNVKADVFTYSTI 224

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I S  +    D    +  EM   GI+ S VTYN+++ G  KA K+ +       MV S  
Sbjct: 225 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV-SRE 283

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P++ T N ++  +   G +++  + Y E    G+  +I T N L   Y       +  
Sbjct: 284 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEAN 343

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           +++D M +    P +VT+  +I+ +     ++   + F+ +  RG+  N++TY  LV  +
Sbjct: 344 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 403

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            ++G I   + + +++ +  V+ D   +  ++      G +EK  E+F  +++       
Sbjct: 404 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGI 463

Query: 312 ITFATMIQAYNALGMTEAAQNL 333
           + + T+I+     G  E A NL
Sbjct: 464 VMYTTIIEGMCKGGKVEDAWNL 485



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 140/323 (43%), Gaps = 37/323 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M + G+K SV  Y +LV    ++G  ++    + DM S  +  P+V T+++L+   
Sbjct: 240 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVF 298

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +     ++  EM   GI  + +TYNT++DGY    +  E  +    MV +  C PD
Sbjct: 299 VKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK-CSPD 357

Query: 136 IFTLNSMISAYG-----------------------------------NSGNIEKMEKWYN 160
           I T  S+I  Y                                     SG I+  E+ + 
Sbjct: 358 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 417

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E    GV  D+ T  IL       G  +K   + + +QK      +V Y  +IE   K G
Sbjct: 418 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 477

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            +E     F  +  +G+KPN +TY  ++S   K G + + + +LR++E      +   +N
Sbjct: 478 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYN 537

Query: 281 CIISAYGQAGDVEKMGELFLTMK 303
            +I A+ + GD+    +L   MK
Sbjct: 538 TLIRAHLRDGDLTASAKLIEEMK 560



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 164/366 (44%), Gaps = 37/366 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + + A  LF+ M+     PS+  ++   SA  ++   +        ++ ++    ++YT 
Sbjct: 58  KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLE-LNGIAHNIYTL 116

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I+I    +  +      +L ++  LG E    T+NT+I G     K  E       MVE
Sbjct: 117 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 176

Query: 129 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEK------------------------ 157
           +G C PD+ T NS+++    SG+       + KME+                        
Sbjct: 177 NG-CQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 235

Query: 158 ----WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                + E    G+K+ + T N L +   +AG ++    ++  M  R   P V+T+N+++
Sbjct: 236 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 295

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
           + F K G +++  E +K+M  RG+ PN ITY +L+  Y     + + +++L  +  +   
Sbjct: 296 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 355

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   F  +I  Y     V+   ++F  + +R  V + +T++ ++Q +   G  + A+ L
Sbjct: 356 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 415

Query: 334 ENKMIA 339
             +M++
Sbjct: 416 FQEMVS 421



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 119/245 (48%), Gaps = 2/245 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ L++ M++ G+ P++  Y  L+  Y     L EA + + D+   + C PD+ T++ 
Sbjct: 305 QEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKCSPDIVTFTS 363

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LIK      R D   K+   +S  G+  +AVTY+ ++ G+ ++ K +  E  F  MV S 
Sbjct: 364 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV-SH 422

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD+ T   ++    ++G +EK  + + +     +   I     + +   + G  +  
Sbjct: 423 GVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDA 482

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            ++   +  +   P V+TY ++I    K G + +     +KM+  G  PN  TY +L+ A
Sbjct: 483 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 542

Query: 251 YSKAG 255
           + + G
Sbjct: 543 HLRDG 547



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 121/296 (40%), Gaps = 40/296 (13%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + E A  LF  +   G+KP+V  YT ++S   + G L EA   +  M+   
Sbjct: 469 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 528

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF--- 116
           +  P+  TY+ LI++  +        K++ EM   G    A +   +ID    A K    
Sbjct: 529 NA-PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTL 587

Query: 117 --------------------EEMESSFSAMVESGGCHPDIFTLN-SMISAYG-NSGNIEK 154
                               E++  S    V+   C+    +LN + I A G NS  + +
Sbjct: 588 RYCLSKGSKSRQDLLELSGSEKIRLSSLTFVKMFPCNTITTSLNVNTIEARGMNSAELNR 647

Query: 155 -MEKWYNEFNLMGVK-ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT-VVTYNI 211
            + K      L   K  D++ L  +T      G+ D    +M  ++     PT  V Y  
Sbjct: 648 DLRKLRRSSVLKKFKNRDVRVL--VTNELLTWGLEDAECDLMVDLE----LPTDAVHYAH 701

Query: 212 VIETFGKAGH---IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
                 + G    +   EE  K+M  RG+ PN+ITY SL+  + K   + + + +L
Sbjct: 702 RAGRMRRPGRKMTVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQML 757


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 152/336 (45%), Gaps = 4/336 (1%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   E +  LF  M   GL P V  Y +L+  YG+ G L+E  S  N+MK V  C PD
Sbjct: 241 CKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVG-CVPD 299

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY+ LI    KF +     +  +EM   G++ + VTY+T+ID + K    +       
Sbjct: 300 IITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLX 359

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M  +G   P+ FT  S+I A   +GN+ +  K  N+    GVK +I T   L     +A
Sbjct: 360 DMRRTG-LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKA 418

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G   +   V   M K    P    Y  ++  + KA  +E   +  K+M    +KP+ I Y
Sbjct: 419 GRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILY 478

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            S++  +     + +   IL ++++  +  +      II AY +AG        F  M++
Sbjct: 479 GSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQD 538

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
                  +T+  +I      G+ E A +   +M+++
Sbjct: 539 VGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSL 574



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 150/318 (47%), Gaps = 20/318 (6%)

Query: 31  VYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           V+  L S + + GLL+EA   FS + + +++    P   + + L+   +K     L+ K 
Sbjct: 162 VFDVLFSVFVELGLLEEANECFSRMRNFRTL----PKARSCNFLLHRLSKSGNGQLVRKF 217

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             +M   GI  S  TYN +ID   K    E     F  M E G   PD+ T NS+I  YG
Sbjct: 218 FNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMG-LSPDVVTYNSLIDGYG 276

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF---MQKRFFFP 204
             G++E++   +NE   +G   DI T N L   Y +   ++KM    ++   M+     P
Sbjct: 277 KVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCK---FEKMPRAFEYFSEMKNNGLKP 333

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            VVTY+ +I+ F K G ++   +    M+  G+ PN  TY SL+ A  KAG + +   +L
Sbjct: 334 NVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLL 393

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
             +  + V L+   +  ++    +AG + +  E+F +M +    P+   +  ++  Y   
Sbjct: 394 NDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGY--- 450

Query: 325 GMTEAAQNLENKMIAMKE 342
                A+ +E+ M  +K+
Sbjct: 451 ---IKAERMEDAMKILKQ 465



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 148/311 (47%), Gaps = 2/311 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A+  F  M +    P       L+    +SG         NDM   +   P V+TY++
Sbjct: 177 EEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIG-AGIAPSVFTYNV 235

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    K    +   ++  +M  +G+    VTYN++IDGYGK    EE+ S F+ M +  
Sbjct: 236 MIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM-KDV 294

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC PDI T N +I+ Y     + +  ++++E    G+K ++ T + L  ++ + GM    
Sbjct: 295 GCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 354

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             ++  M++    P   TY  +I+   KAG++ +  +    M   G+K N +TY +L+  
Sbjct: 355 IKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDG 414

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             KAG +++ + + R +    +  +   +  ++  Y +A  +E   ++   M E +  PD
Sbjct: 415 LCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 474

Query: 311 NITFATMIQAY 321
            I + ++I  +
Sbjct: 475 LILYGSIIWGH 485



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 150/356 (42%), Gaps = 35/356 (9%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  M ++GLKP+V  Y+ L+ A+ + G++  A   + DM+  +   P+ +TY+ LI +  
Sbjct: 323 FSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRR-TGLLPNEFTYTSLIDANC 381

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------ 130
           K        K+L +M   G++ + VTY  ++DG  KA +  E E  F +M++ G      
Sbjct: 382 KAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQ 441

Query: 131 ----------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
                                          PD+    S+I  + +   +E+ +    E 
Sbjct: 442 VYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEM 501

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              G+ A+      +  +Y +AG      +    MQ      T+VTY ++I+   +AG +
Sbjct: 502 KSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIV 561

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           E   +YF +M   G++PN   Y SL+        I     +  +++   +  D   F  +
Sbjct: 562 ELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTAL 621

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           I    + G++++   L   M E     D   + +++  ++  G    A+   N+MI
Sbjct: 622 IDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMI 677



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 146/330 (44%), Gaps = 4/330 (1%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  L   ML  G+K ++  YTAL+    ++G + EA      M       P+   Y+ L
Sbjct: 388 EAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLK-DGISPNQQVYTAL 446

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG- 130
           +    K  R +   KIL +M+   I+   + Y +II G+   +K EE +     M   G 
Sbjct: 447 VHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGI 506

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
             +P I T  ++I AY  +G       ++ E   +GV+A I T  +L      AG+ +  
Sbjct: 507 SANPVIST--TIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELA 564

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
                 M      P V  Y  +I+       IE  ++ F +M+ RGM P+   + +L+  
Sbjct: 565 VDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDG 624

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K G + +   ++ ++    +  D   +  ++S + Q G++ +  + F  M E+  +P+
Sbjct: 625 NLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPE 684

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +    +++ Y   G  + A  L+N+M  M
Sbjct: 685 EVLCICLLREYYKRGQLDEAIELKNEMERM 714



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 161/352 (45%), Gaps = 23/352 (6%)

Query: 2   VMLGKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTIND--MKSV 58
           ++LG  + P+ A   F+   S  G + + + Y  +V    ++ +  +A  T+ +  M S 
Sbjct: 76  ILLGLREDPKLALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSR 135

Query: 59  SDCK-PDVYTYSILIKS----CTKFHRFDLIEKILAEMSYL--GIEC-----------SA 100
            D   P    + +L  +     +    FD++  +  E+  L    EC            A
Sbjct: 136 MDMGFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKA 195

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
            + N ++    K+   + +   F+ M+   G  P +FT N MI      G++E   + + 
Sbjct: 196 RSCNFLLHRLSKSGNGQLVRKFFNDMI-GAGIAPSVFTYNVMIDYLCKEGDLENSRRLFV 254

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           +   MG+  D+ T N L   YG+ G  +++ S+ + M+     P ++TYN +I  + K  
Sbjct: 255 QMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFE 314

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            + +  EYF +MK+ G+KPN +TY +L+ A+ K G++     +L  +  + ++ +   + 
Sbjct: 315 KMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYT 374

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQ 331
            +I A  +AG++ +  +L   M +     + +T+  ++      G M EA +
Sbjct: 375 SLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEE 426


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 158/331 (47%), Gaps = 5/331 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVD--VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           ++AS+L + M + G    ++   Y  ++S   + G L+ A   ++ M+     K   +TY
Sbjct: 260 DEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSK--KASSFTY 317

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + LI +  +      +E +  EM   GI  + VTYN II G  K+++ E  +  F+ M  
Sbjct: 318 NPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEM-R 376

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           + G  PD+ T NSM++ Y  +GN+++      +    G+   + T N L   Y R G  +
Sbjct: 377 AMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLE 436

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           + R + + M ++  FP V TY I++    K  ++    E+F +M  +G++P+   Y + +
Sbjct: 437 EARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRI 496

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
            A    G   K   +   +    +  DT  +N II    + G+++   +L + M      
Sbjct: 497 CAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQ 556

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           PD IT+  +I A+   G+   A+ L N M++
Sbjct: 557 PDCITYTCLIHAHCERGLLSEARKLLNGMVS 587



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 132/278 (47%), Gaps = 2/278 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV   + +++      R+D +  +  EM  L IE + VTYNT++D + K  + +E    
Sbjct: 206 PDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASML 265

Query: 123 FSAM-VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
              M  + GGC  +  T N +IS     G++E   K  +   L   KA   T N L  + 
Sbjct: 266 LKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRL-SKKASSFTYNPLITAL 324

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
              G   K+ ++   M+     PT+VTYN +I    K+  +E  +  F +M+  G+ P+ 
Sbjct: 325 LERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDL 384

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           ITY S+++ Y KAG + +   +L  +  + +      +N +I  Y + G +E+   L   
Sbjct: 385 ITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEE 444

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M E+ C PD  T+  ++   + +     A+   ++M++
Sbjct: 445 MVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLS 482



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 147/339 (43%), Gaps = 16/339 (4%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    ++A  L   +   GL P+V  Y  L+  Y + G L+EA     +M     C 
Sbjct: 393 GYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVE-QGCF 451

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT------IIDGYGKAKKF 116
           PDV TY+IL+    K     +  +   EM   G++     YNT      I+    KA + 
Sbjct: 452 PDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQL 511

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
            E+      M++  G +PD  T N +I     +GN++  +    +    G++ D  T   
Sbjct: 512 REV-----MMLK--GIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTC 564

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           L  ++   G+  + R +++ M      P+VVTY I+I T  + G++     +F+KM   G
Sbjct: 565 LIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVG 624

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           ++PN ITY  L+ A  + G  +       ++    +  +   +  +I    + G+     
Sbjct: 625 IEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAI 684

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
            L+  M +    PD  T   + + ++   M  A + LEN
Sbjct: 685 RLYFEMHQNGIPPDYCTHNALFKGFDKGHMYHAIEYLEN 723



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 149/319 (46%), Gaps = 2/319 (0%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M ++G+ P++  Y A++    +S  ++ A     +M+++    PD+ TY+ ++    K  
Sbjct: 340 MENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMG-LLPDLITYNSMLNGYCKAG 398

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
                  +L ++   G+  + +TYNT+IDGY +    EE       MVE G C PD+ T 
Sbjct: 399 NLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQG-CFPDVCTY 457

Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
             +++      N+    ++++E    G++ D    N    +    G   K   + + M  
Sbjct: 458 TILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMML 517

Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
           +  +P  VTYN++I+   K G+++  ++   KM   G++P+ ITY  L+ A+ + GL+ +
Sbjct: 518 KGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSE 577

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +L  + +  +      +  +I    + G++      F  M +    P+ IT+  +I 
Sbjct: 578 ARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIH 637

Query: 320 AYNALGMTEAAQNLENKMI 338
           A    G T  A +  ++M+
Sbjct: 638 ALCRTGRTLLAYHHFHEML 656



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 93/202 (46%), Gaps = 3/202 (1%)

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           +V   G  PD+   N ++    ++   + +   Y E   + ++  I T N L  S+ + G
Sbjct: 198 VVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEG 257

Query: 186 MYDKMRSVMDFMQKR--FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
             D+   ++  M+ +        VTYN+VI    + GH+E   +    M+    K +S T
Sbjct: 258 RKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMR-LSKKASSFT 316

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y  L++A  + G + KV+++  ++EN  ++     +N II    ++  VE     F  M+
Sbjct: 317 YNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMR 376

Query: 304 ERHCVPDNITFATMIQAYNALG 325
               +PD IT+ +M+  Y   G
Sbjct: 377 AMGLLPDLITYNSMLNGYCKAG 398


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 137/305 (44%), Gaps = 2/305 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K  EQA  + + M  +G +P++  Y AL+         +EA   +  M+      P
Sbjct: 368 LCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQ-GGVPP 426

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++YTY+IL     K  R D  +++  E    G++ + VTYNT+++GY +  +  E     
Sbjct: 427 NIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDIL 486

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M ++  C PD  T  ++I        +    + ++E    G   +  TLNIL +   R
Sbjct: 487 KEMHQND-CTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLAR 545

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G +         M+ R F  +   Y + I     AG +E+ +    +M ++G  PN  T
Sbjct: 546 VGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTT 605

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +++  + + G +   D++L  +  + +  DT  +N +I  +   G  +   +L+ T  
Sbjct: 606 YNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYATAL 665

Query: 304 ERHCV 308
           ER  V
Sbjct: 666 ERGVV 670



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 136/292 (46%), Gaps = 4/292 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+ K   +   L + M + G + +  +  + V +YG+SG   E+    N MK +   +
Sbjct: 225 ILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMG-YE 283

Query: 63  PDVY--TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
           P +    Y+ ++ S  K  + D+ E + A+M   G+ C+ +TY ++I  +   +K E+  
Sbjct: 284 PGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAM 343

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                M+++    PD+ T   +ISA      IE+      +    G + +I T N L + 
Sbjct: 344 KLLDDMIQNNYA-PDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQG 402

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
                  ++   ++  M++    P + TY I+     K   +++ +E F +   RG+KPN
Sbjct: 403 LCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPN 462

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
            +TY +L++ Y +   +++   IL+++  +D   D   +  +I    Q   +
Sbjct: 463 RVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQL 514



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 148/338 (43%), Gaps = 2/338 (0%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +V L K K+ + A  LF  M+++G+  +   YT+++  +     +++A   ++DM   ++
Sbjct: 295 LVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQ-NN 353

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             PDV TY+I+I +  K    +    +L +M   G E +  TYN +I G    ++ EE  
Sbjct: 354 YAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEA- 412

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
                ++E GG  P+I+T   +         +++ ++ +NE    G+K +  T N L   
Sbjct: 413 LELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNG 472

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y R     +   ++  M +    P  VTY  +I+   +   +        +M+++G   N
Sbjct: 473 YCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVN 532

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
             T   L    ++ G         R++++         +   I     AG++E+   L  
Sbjct: 533 FDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLY 592

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            M  +   P+  T+ TMI+ +   G  + A  + N MI
Sbjct: 593 EMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMI 630



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 108/244 (44%), Gaps = 5/244 (2%)

Query: 81  FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF--T 138
           F  ++ +L +M   G E +    ++ +  YG++ +F+E   +F+ M E  G  P +    
Sbjct: 232 FTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEM-GYEPGLIDTA 290

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG-RAGMYDKMRSVMDFM 197
            NS++ +   +  ++  E  + +    GV  +  T   + + +  +  M D M+ + D +
Sbjct: 291 YNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMI 350

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
           Q   + P VVTY IVI    K   IE+     +KM+  G +PN  TY +L+         
Sbjct: 351 QNN-YAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRP 409

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
            +   ++  +E   V  +   +  +     +   +++  E+F     R   P+ +T+ T+
Sbjct: 410 EEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTL 469

Query: 318 IQAY 321
           +  Y
Sbjct: 470 LNGY 473



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 86/195 (44%), Gaps = 2/195 (1%)

Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
           +MI   G +    +++    +    G +     L+    SYGR+G + +     + M++ 
Sbjct: 221 TMIDILGRAKMFTELQSLLQKMQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEM 280

Query: 201 FFFPTVV--TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
            + P ++   YN V+ +  K   ++  E  F +M + G+  N++TY S++  +     + 
Sbjct: 281 GYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKME 340

Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
               +L  +  ++   D   +  +ISA  +   +E+   +   M+E  C P+  T+  +I
Sbjct: 341 DAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALI 400

Query: 319 QAYNALGMTEAAQNL 333
           Q   A+   E A  L
Sbjct: 401 QGLCAVRRPEEALEL 415



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 107/248 (43%), Gaps = 5/248 (2%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G + +   Y T+ID  G+AK F E++S    M ++ G       L+S + +YG SG  ++
Sbjct: 211 GYDHNTDAYFTMIDILGRAKMFTELQSLLQKM-QTQGREITRSMLHSFVMSYGRSGRFKE 269

Query: 155 MEKWYNEFNLMGVKADI--QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
             + +N    MG +  +     N +  S  +    D   ++   M         +TY  +
Sbjct: 270 SLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSM 329

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           I+ F     +E   +    M      P+ +TY  ++SA  K  +I +   +L+++  +  
Sbjct: 330 IQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMRENGC 389

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI-TFATMIQAYNALGMTEAAQ 331
             +   +N +I         E+  EL +T+ E+  VP NI T+  +      L   + A+
Sbjct: 390 EPNIYTYNALIQGLCAVRRPEEALEL-VTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAK 448

Query: 332 NLENKMIA 339
            + N+ +A
Sbjct: 449 EMFNEALA 456


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 153/336 (45%), Gaps = 7/336 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  +  +A  +F+ M   G  P    Y  L+  Y ++  + +AF     M+      
Sbjct: 516 GLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMER-EXIS 574

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P +  Y+ LI    K  R      +L EM   G+  + VTY  +IDG+ K    ++  SS
Sbjct: 575 PSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 634

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +  M E+G    +I   ++M+S     G I++      +    G   D +      KS  
Sbjct: 635 YFEMTENG-LSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF---LKSDI 690

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R     K+   +D   K F  P  + YNI I    K G ++    +F  +  +G  P++ 
Sbjct: 691 RYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNF 750

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TYC+L+  YS AG + +   +  ++    ++ +   +N +I+   ++ +V++   LF  +
Sbjct: 751 TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 810

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            ++   P+ +T+ T+I  Y  +G  +AA  L++KMI
Sbjct: 811 HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMI 846



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 148/355 (41%), Gaps = 36/355 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  + + M   G+  +V  YT L+  Y +   +DEA   +  M+  +   PD   Y +
Sbjct: 278 EAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGV 337

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    +  + D   ++L EM  LG++ +    N++I+GY K  +  E E   + MV+  
Sbjct: 338 LIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-W 396

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD ++ N+++  Y   G+  +     ++    G++  + T N L K   R G +D  
Sbjct: 397 NLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDA 456

Query: 191 RSVMDFMQK-----------------------------------RFFFPTVVTYNIVIET 215
             +   M K                                   R F  + +T+N +I  
Sbjct: 457 LQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISG 516

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
             K G + + EE F KMK  G  P+ ITY +L+  Y KA  + +   +   +E   +   
Sbjct: 517 LCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPS 576

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              +N +IS   ++  + +  +L   M  R   P+ +T+  +I  +   GM + A
Sbjct: 577 IEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKA 631



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 151/354 (42%), Gaps = 38/354 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  +   A  +++ M+  G+ P V + + +V+A+ + G +DEA   +  M+++   +P
Sbjct: 201 LVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLG-VEP 259

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           ++ TY  LI         +  + +L  MS  G+  + VTY  +I GY K  K +E E   
Sbjct: 260 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 319

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E     PD      +I  Y  +G I+   +  +E   +G+K ++   N L   Y +
Sbjct: 320 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 379

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G   +   V+  M      P   +YN +++ + + GH  +      KM   G++P  +T
Sbjct: 380 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 439

Query: 244 YCSLVSAYSKAG----------LIMKVDSILRQVENSDVILDTPF--------------- 278
           Y +L+    + G          L+MK      +V  S  +LD  F               
Sbjct: 440 YNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYS-TLLDGLFKMENFEGASTLWKDI 498

Query: 279 -----------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
                      FN +IS   + G + +  E+F  MK+  C PD IT+ T+I  Y
Sbjct: 499 LARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGY 552



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 4/322 (1%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+ E  +A  +   M+   LKP    Y  L+  Y + G   EAF+  + M      +
Sbjct: 376 GYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ-EGIE 434

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V TY+ L+K   +   FD   +I   M   G+    V Y+T++DG  K + FE   + 
Sbjct: 435 PTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTL 494

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +  ++  G     I T N+MIS     G + + E+ +++   +G   D  T   L   Y 
Sbjct: 495 WKDILARGFTKSRI-TFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYC 553

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A    +   V   M++    P++  YN +I    K+  + +  +   +M  RG+ PN +
Sbjct: 554 KASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIV 613

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+  + K G++ K  S   ++  + +  +    + ++S   + G +++   L   M
Sbjct: 614 TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 673

Query: 303 KERHCVPDNITFATMIQAYNAL 324
            +    PD+  F      Y A+
Sbjct: 674 VDHGFFPDHECFLKSDIRYAAI 695



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 35/294 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E   LL E+ +  GL P++  Y AL+  + + G+LD+AFS+  +M   +    ++   S 
Sbjct: 595 EXTDLLTEMGIR-GLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTE-NGLSANIIICST 652

Query: 71  LIKSCTKFHRFD----LIEKILAEMSYLGIEC---------------------------- 98
           ++    +  R D    L++K++    +   EC                            
Sbjct: 653 MVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLP 712

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           + + YN  I G  K  K ++    FS M+   G  PD FT  ++I  Y  +GN+++  + 
Sbjct: 713 NNIVYNIAIAGLCKTGKVDDARRFFS-MLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 771

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
            +E    G+  +I T N L     ++   D+ + +   + ++  FP VVTYN +I+ + K
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 831

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
            G+++   +   KM   G+ P+ +TY +L++   K G I +   +L Q+  + V
Sbjct: 832 IGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGV 885



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 152/340 (44%), Gaps = 12/340 (3%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+  + + A  L + ML  GLK ++ +  +L++ Y + G + EA   I  M    + K
Sbjct: 341 GYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-WNLK 399

Query: 63  PDVYTYSILIKS-CTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           PD Y+Y+ L+   C + H    F+L +K+L E    GIE + +TYNT++ G  +   F++
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQE----GIEPTVLTYNTLLKGLCRVGAFDD 455

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               +  M++ G   PD    ++++       N E     + +    G      T N + 
Sbjct: 456 ALQIWHLMMKXG-VAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 514

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               + G   +   + D M+     P  +TY  +I+ + KA ++ +  +    M+   + 
Sbjct: 515 SGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXIS 574

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+   Y SL+S   K+  +++   +L ++    +  +   +  +I  + + G ++K    
Sbjct: 575 PSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 634

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +  M E     + I  +TM+     LG  + A  L  KM+
Sbjct: 635 YFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMV 674



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 17/246 (6%)

Query: 11  EQASLLFEVMLSDGLKPS------VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           ++A+LL + M+  G  P        D+  A +     S  LDE+  T           P+
Sbjct: 664 DEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADS--LDESCKTF--------LLPN 713

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
              Y+I I    K  + D   +  + +S  G      TY T+I GY  A   +E      
Sbjct: 714 NIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRD 773

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+  G   P+I T N++I+    S N+++ ++ +++ +  G+  ++ T N L   Y + 
Sbjct: 774 EMLRRG-LVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKI 832

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  D    + D M +    P+VVTY+ +I    K G IE+  +   +M   G+    I Y
Sbjct: 833 GNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEY 892

Query: 245 CSLVSA 250
           C+LV  
Sbjct: 893 CTLVQG 898



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/312 (20%), Positives = 139/312 (44%), Gaps = 3/312 (0%)

Query: 28  SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87
           S  V+  ++  Y + GL   A    ++M       P + + + L+ +  K         +
Sbjct: 155 SPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRI-PSLRSCNSLLNNLVKNGETHTAHYV 213

Query: 88  LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
             +M  +GI       + +++ + K  K +E  + F   +E+ G  P+I T +S+I+ Y 
Sbjct: 214 YQQMIRVGIVPDVFMVSIMVNAFCKDGKVDE-AAGFVKKMENLGVEPNIVTYHSLINGYV 272

Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTV 206
           + G++E  +      +  GV  ++ T  +L K Y +    D+   V+  MQ+     P  
Sbjct: 273 SLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDE 332

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
             Y ++I+ + + G I+       +M   G+K N     SL++ Y K G I + + ++ +
Sbjct: 333 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 392

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + + ++  D+  +N ++  Y + G   +   L   M +    P  +T+ T+++    +G 
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 327 TEAAQNLENKMI 338
            + A  + + M+
Sbjct: 453 FDDALQIWHLMM 464



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 69/350 (19%), Positives = 140/350 (40%), Gaps = 54/350 (15%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
            +P+V  Y  LV    +  + DE  + +N                 L+  C    R ++I
Sbjct: 98  FRPNVKSYCKLVHILSRGRMYDETRAYLNQ----------------LVDLCKFKDRGNVI 141

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
              L  + Y     S   ++ I+  Y +    +     F  M + G   P + + NS+++
Sbjct: 142 WDELVGV-YREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRI-PSLRSCNSLLN 199

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               +G        Y +   +G+  D+  ++I+  ++ + G  D+    +  M+     P
Sbjct: 200 NLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEP 259

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            +VTY+ +I  +   G +E  +   K M  +G+  N +TY  L+  Y K   + + + +L
Sbjct: 260 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 319

Query: 265 R--------------------------QVENSDVILD--------TPFFNC--IISAYGQ 288
           R                          +++++  +LD        T  F C  +I+ Y +
Sbjct: 320 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 379

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            G++ +   +   M + +  PD+ ++ T++  Y   G T  A NL +KM+
Sbjct: 380 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML 429



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K +  ++A  LF  +   GL P+V  Y  L+  Y + G +D AF  + D        P
Sbjct: 794 LCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFK-LKDKMIEEGISP 852

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
            V TYS LI    K    +   K+L +M   G++   + Y T++ G  K   + EM S  
Sbjct: 853 SVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGFKTSNYNEM-SKP 911

Query: 124 SAMVESGGCH--PD---------IFTLNSMISAYGNSGNIEKMEKWYNEFN 163
            A+ ++  C   P          +  L+  I  +G  G I     W+N  N
Sbjct: 912 EALKQNMNCFLLPKFKHSWKFVGVVALDCPIRIFGPKGTI-----WFNLIN 957


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 146/313 (46%), Gaps = 5/313 (1%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P V  Y A+V+ Y  +G LD A   + +M      +PD YTY+ LI+      R      
Sbjct: 124 PDVMAYNAMVAGYCGAGQLDAARRLVAEMPV----EPDAYTYNTLIRGLCGRGRTANALA 179

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +L EM         VTY  +++   K   +++       M + G C PDI T N +++  
Sbjct: 180 VLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKG-CTPDIVTYNVVVNGI 238

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G ++   ++       G + +  + NI+ K    A  ++    +M  M ++   P V
Sbjct: 239 CQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 298

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VT+N++I    + G +E   E  +++   G  PNS++Y  L+ A+ K   + K  + L  
Sbjct: 299 VTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDL 358

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + +     D   +N +++A  ++G+V+   EL   +K++ C P  I++ T+I      G 
Sbjct: 359 MVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGK 418

Query: 327 TEAAQNLENKMIA 339
           T+ A  L N+M++
Sbjct: 419 TKEALELLNEMVS 431



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 159/336 (47%), Gaps = 10/336 (2%)

Query: 7   CKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+   +QA  L + M   G  P +  Y  +V+   Q G +D+A   + ++ S   C+P+
Sbjct: 204 CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYG-CEPN 262

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +Y+I++K      R++  E+++ EM   G   + VT+N +I    + K   E      
Sbjct: 263 TVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR-KGLVEPALEVL 321

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSY 181
             +   GC P+  + N ++ A+      +KM+K     +LM   G   DI + N L  + 
Sbjct: 322 EQIPKYGCTPNSLSYNPLLHAFCKQ---KKMDKAMAFLDLMVSRGCYPDIVSYNTLLTAL 378

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R+G  D    ++  ++ +   P +++YN VI+   KAG  ++  E   +M  +G++P+ 
Sbjct: 379 CRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDI 438

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           ITY ++ +   +   I        +V++  +  +T  +N II    +  +     +LF  
Sbjct: 439 ITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAY 498

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M    C+P+  T+  +I+     G+ + A++L +++
Sbjct: 499 MIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 534



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 3/217 (1%)

Query: 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
           KK      +  A      C PD+   N+M++ Y  +G ++   +   E   M V+ D  T
Sbjct: 104 KKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVAE---MPVEPDAYT 160

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            N L +     G      +V+D M +R   P VVTY I++E   K    ++  +   +M+
Sbjct: 161 YNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR 220

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +G  P+ +TY  +V+   + G +      L+ + +     +T  +N ++     A   E
Sbjct: 221 DKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWE 280

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              EL   M ++ C P+ +TF  +I      G+ E A
Sbjct: 281 DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPA 317



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 104/232 (44%), Gaps = 2/232 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  + E +   G  P+   Y  L+ A+ +   +D+A + ++ M S   C PD+ +Y+ 
Sbjct: 315 EPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVS-RGCYPDIVSYNT 373

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  +    D+  ++L ++   G     ++YNT+IDG  KA K +E     + MV S 
Sbjct: 374 LLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV-SK 432

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PDI T +++ +       IE   + + +   MG++ +    N +     +       
Sbjct: 433 GLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSA 492

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             +  +M      P   TY I+IE     G I++  +   ++  RG+   S+
Sbjct: 493 IDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSL 544


>gi|356528509|ref|XP_003532845.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
           chloroplastic-like [Glycine max]
          Length = 580

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 151/334 (45%), Gaps = 5/334 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS----GLLDEAFSTINDMKSV 58
           ++GK  Q   A  LF  M + G +P   VY AL++A+ +S      L +A      MK +
Sbjct: 181 VMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLRSRDKIKALAKAIGYFQKMKGM 240

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             CKP++ TY+IL+++  +    + +  +  ++    +     T+N ++D YGK     E
Sbjct: 241 ERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIRE 300

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           ME+  + M +S  C PD+ T N +I +YG      KME+ +        +  + T N + 
Sbjct: 301 MEAVLARM-KSNQCKPDLITFNLLIDSYGKKQAFGKMEQVFKSLLHSKERPSLPTFNSMI 359

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
            +YG+A + DK   V   M    +  + VT+  +I  +G    + +  + F ++    + 
Sbjct: 360 LNYGKARLKDKAEDVFKKMTDMGYTLSFVTHESMIYMYGFCDCVSRAAQLFDELVESKVH 419

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
               T  +++  Y   GL  + DS+  +  +  +  D+  F  +  AY +A   E + +L
Sbjct: 420 IKVSTLNAMLDVYCLNGLPQEADSLFERAISIKIHPDSSTFKLLYKAYTKANQKELLDKL 479

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
              M +   +P+   F   + A  +L     + N
Sbjct: 480 LKHMDKDGIIPNKRFFLDALGAVASLPANSESAN 513



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 141/311 (45%), Gaps = 32/311 (10%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +Y+ L+S  G+ G    A    ++M++   C+PD   Y+ LI +       D I+ +   
Sbjct: 174 IYSKLISVMGKKGQTRMAMWLFSEMRNTG-CRPDTSVYNALITA--HLRSRDKIKALAKA 230

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           + Y                    +K + ME           C P+I T N ++ A+  + 
Sbjct: 231 IGYF-------------------QKMKGMER----------CKPNIVTYNILLRAFAQAR 261

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           N+E++   + + +   V  DI T N +  +YG+ GM  +M +V+  M+     P ++T+N
Sbjct: 262 NVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFN 321

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           ++I+++GK     KME+ FK + H   +P+  T+ S++  Y KA L  K + + +++ + 
Sbjct: 322 LLIDSYGKKQAFGKMEQVFKSLLHSKERPSLPTFNSMILNYGKARLKDKAEDVFKKMTDM 381

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              L       +I  YG    V +  +LF  + E        T   M+  Y   G+ + A
Sbjct: 382 GYTLSFVTHESMIYMYGFCDCVSRAAQLFDELVESKVHIKVSTLNAMLDVYCLNGLPQEA 441

Query: 331 QNLENKMIAMK 341
            +L  + I++K
Sbjct: 442 DSLFERAISIK 452


>gi|222626074|gb|EEE60206.1| hypothetical protein OsJ_13175 [Oryza sativa Japonica Group]
          Length = 789

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +Q+ +L   ML  G+ P    Y  +V A+  +G L        +M S +   PD   Y  
Sbjct: 69  DQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEM-SATGHTPDPSAYLG 127

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++ T          +L +M   G   +A TY  ++D YG+  +F+ +   F  M  + 
Sbjct: 128 LMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT- 186

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T N +   +G+ G  +++ + + +     V+ DI T   +  + GR G+++  
Sbjct: 187 -VPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDA 245

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R V+D++      PT   Y  ++E  G A   E+    F  M   G  P   TY +L +A
Sbjct: 246 REVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANA 305

Query: 251 YSKAGLIMKVDSIL-RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           ++K GL  + ++I  R   N+ +  D   F+ +I AY Q   ++   + ++ M++    P
Sbjct: 306 FAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNP 365

Query: 310 DNITFATMIQAYNALGMTEAAQ 331
           D  +   ++ AY   G+ + ++
Sbjct: 366 DERSLEGVLNAYCIAGVIDESK 387



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 122/286 (42%), Gaps = 9/286 (3%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ ML   ++P +D    ++ A G+ GL ++A   + D  +     P    Y+ L+++ 
Sbjct: 213 LFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVL-DYITTEGMVPTAKAYTGLVEAL 271

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                ++        M+ +G   +  TYN + + + K   F+E E+ FS M  +     D
Sbjct: 272 GHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKD 331

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             + +++I AY     ++   K Y E        D ++L  +  +Y  AG+ D+ +   +
Sbjct: 332 KDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFE 391

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-HRGMKPNSITYCSLVSAYSKA 254
            +Q     P+++ Y +++  + +        +  ++MK +R    + +    +   Y   
Sbjct: 392 ELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIKGEYDDD 451

Query: 255 GLIMKVDSIL--RQVENSDVILDTPFFNCIISA---YGQAGDVEKM 295
                V+ +L    +E  D  L   FFN ++     +GQ G   ++
Sbjct: 452 SNWQMVEYVLDNSNLEGCDYSLR--FFNALLDVLWWFGQKGRAARV 495



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 1/155 (0%)

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           V+ D+ T N L  +     + D+   ++  M +    P   +Y  +++ F  AG++ ++ 
Sbjct: 48  VRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVA 107

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
           E F +M   G  P+   Y  L+ A++  G   +  ++LRQ++          +  ++  Y
Sbjct: 108 ELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLY 167

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
           G+ G  + + ELF  M+     PD  T+  + + +
Sbjct: 168 GRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVF 201



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 204 PTVVTYNIVIETFGKAGH----IEKMEEYFKKMKH---RGMKPNSITYCSLVSAYSKAGL 256
           PT  TYN V+    +A       + +   F +M+H     ++P+  TY +L++A +   L
Sbjct: 8   PTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRAL 67

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
             + + +LR +  + V+ DT  +  I+ A+  AG++ ++ ELF  M      PD   +  
Sbjct: 68  SDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLG 127

Query: 317 MIQAYNALGMTEAAQNLENKMIA 339
           +++A+  +G T  A  +  +M A
Sbjct: 128 LMEAHTLVGATAEAVAVLRQMQA 150



 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 7/162 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG     E+A + F +M   G  P+++ Y AL +A+ + GL  EA +  + M + +  + 
Sbjct: 271 LGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQK 330

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  ++  LI++  +  + D   K   EM          +   +++ Y  A   +E +  F
Sbjct: 331 DKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQF 390

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
             + +S    P I     M+S Y       + ++W + ++L+
Sbjct: 391 EEL-QSMVTVPSIIAYCMMLSLYA------RNDRWTDAYDLL 425


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 148/318 (46%), Gaps = 2/318 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ ++A  LFE M   G+ P+V  YT+L+  +   G  +EA    N+M +    +P
Sbjct: 252 LCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVN-QGVQP 310

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V T+++LI    K  +    + +L  M   GI  + +TYN++I+G+            F
Sbjct: 311 NVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELF 370

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
            +M  S GC PD+     +I+ Y  +  +E+  K YN    +G + D++T   L     +
Sbjct: 371 VSM-PSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQ 429

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G     + +   M+       +  Y I +    K G + +  E F K+K   +K +   
Sbjct: 430 GGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIEC 489

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           +  L+    KAG +     +  ++   ++  D   +N +I  + + G V K   LF  M+
Sbjct: 490 FNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKME 549

Query: 304 ERHCVPDNITFATMIQAY 321
           +  C PD IT+AT+I+ +
Sbjct: 550 KNGCTPDKITYATLIRGF 567



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 127/272 (46%), Gaps = 4/272 (1%)

Query: 7   CKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           CK+ +  +A  L EVM+  G+ P++  Y +L+  +   G L+ A      M S   C+PD
Sbjct: 323 CKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPS-KGCEPD 381

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V  Y++LI    K  + +   K+   M  +G      TY  ++ G  +  K  + +  F 
Sbjct: 382 VICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFG 441

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M +  G   D++     ++    +G + +  + +N+     +K DI+  N L     +A
Sbjct: 442 VM-KVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKA 500

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G  +    + + + +    P VVTYNI+I  F + G + K    F+KM+  G  P+ ITY
Sbjct: 501 GKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITY 560

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
            +L+  + ++  + KV  +L  +   DV LD 
Sbjct: 561 ATLIRGFFESKKLEKVVELLHMMVQRDVSLDV 592



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 137/322 (42%), Gaps = 31/322 (9%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           QA   F +M+     P +  +T L+S   +     + F   N M+ +S   PD  T +IL
Sbjct: 79  QAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMR-LSGISPDCCTLNIL 137

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           +      +R      ++A +   G     VTY T+I G     +  +    F+ M +  G
Sbjct: 138 LNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRM-QKLG 196

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
           C P+  T  +++     +GNI    K + E   M   + +  +N                
Sbjct: 197 CTPNAITYGTLMKGLCRTGNISIALKLHQE---MLNDSSLYGIN---------------- 237

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
                     F P V++Y+I+I+   K    ++  + F++MK +GM P  I+Y SL+  +
Sbjct: 238 ----------FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGF 287

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
              G   +   +  ++ N  V  +   FN +I    + G V +  +L   M +R  VP+ 
Sbjct: 288 CCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNL 347

Query: 312 ITFATMIQAYNALGMTEAAQNL 333
           +T+ ++I+ +  +G   +A+ L
Sbjct: 348 LTYNSLIEGFCLVGDLNSAREL 369



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 130/340 (38%), Gaps = 41/340 (12%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K   Q   L+  M   G+ P       L++       + E  + +  +       P
Sbjct: 106 LAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYI-P 164

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+ TY+ LIK     HR      +   M  LG   +A+TY T++ G  +           
Sbjct: 165 DIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLH 224

Query: 124 SAMVESGGCH-----PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
             M+     +     P + + + +I A       ++    + E  + G+   + +   L 
Sbjct: 225 QEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLI 284

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             +   G +++ + + + M  +   P VVT+N++I+   K G + + ++  + M  RG+ 
Sbjct: 285 HGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIV 344

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           PN +TY SL+  +                             C++      GD+    EL
Sbjct: 345 PNLLTYNSLIEGF-----------------------------CLV------GDLNSAREL 369

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F++M  + C PD I +  +I  Y      E A  L N M+
Sbjct: 370 FVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGML 409



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 12/214 (5%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P + +   ++S      +  ++   YN+  L G+  D  TLNIL           +  +V
Sbjct: 94  PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAV 153

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           M  + +R + P +VTY  +I+       I K    F +M+  G  PN+ITY +L+    +
Sbjct: 154 MAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCR 213

Query: 254 AGLI---------MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            G I         M  DS L  +    V++    ++ II A  +    ++  +LF  MK 
Sbjct: 214 TGNISIALKLHQEMLNDSSLYGINFKPVVIS---YSIIIDALCKDRREDEARDLFEEMKV 270

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           +   P  I++ ++I  +   G  E A+ L N+M+
Sbjct: 271 QGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMV 304



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 79/210 (37%), Gaps = 45/210 (21%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E+A  L+  ML  G +P V  Y AL++   Q G + +A      MK V    
Sbjct: 391 GYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMK-VYGIP 449

Query: 63  PDVYTYSILIKSCTK----FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
            D+Y Y I +    K    F   +L  K+ +    L IEC    +N +IDG  KA K E 
Sbjct: 450 GDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIEC----FNCLIDGLCKAGKLET 505

Query: 119 MESSFSAM----------------------------------VESGGCHPDIFTLNSMIS 144
               F  +                                  +E  GC PD  T  ++I 
Sbjct: 506 AWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIR 565

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
            +  S  +EK+ +  +      V  D+  L
Sbjct: 566 GFFESKKLEKVVELLHMMVQRDVSLDVNIL 595


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 4/327 (1%)

Query: 1   MVMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           ++M G CK  +   A ++F+ +   GL+PSV  +  L+S Y +S  ++E F   + M+S 
Sbjct: 231 ILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMES- 289

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
               PDV+TYS LI    K  R +    +  EM  +G+  + VT+ T+IDG  K  K + 
Sbjct: 290 ERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDL 349

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
              +F  M + G   PD+ T N++I+     G++++  K  NE    G K D  T   L 
Sbjct: 350 ALRNFEIMKDRG-IRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLM 408

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               + G  D    + D M +       V +  +I    + G +   E   K M   G K
Sbjct: 409 DGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHK 468

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+  TY  ++  + K G +     +L++++    +     +N +++ + + G ++    L
Sbjct: 469 PDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKML 528

Query: 299 FLTMKERHCVPDNITFATMIQAYNALG 325
              M     VP++ITF  ++  +   G
Sbjct: 529 LHAMLNMEVVPNDITFNILLDGHCKHG 555



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 127/278 (45%), Gaps = 7/278 (2%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+VY ++IL+    K         +  E+S  G+  S V++NT+I GY ++K  EE    
Sbjct: 224 PNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEE-GFV 282

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             +++ES    PD+FT +++I+       +E+    ++E   MG+  +  T   L     
Sbjct: 283 LKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQC 342

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D      + M+ R   P ++TYN +I    + G +++  +   +M   G KP+ I
Sbjct: 343 KHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKI 402

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY---GQAGDVEKMGELF 299
           T+ +L+    K G +     I  ++    + LD   F  +IS     G+  D E+M +  
Sbjct: 403 TFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDM 462

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           L+   +   PD+ T+  +I  +   G  +    L  +M
Sbjct: 463 LSAGHK---PDDPTYTMVIDCFCKKGDVKMGAKLLKEM 497


>gi|125583699|gb|EAZ24630.1| hypothetical protein OsJ_08397 [Oryza sativa Japonica Group]
          Length = 482

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 145/314 (46%), Gaps = 11/314 (3%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           +Y+ L+S  G+ G +  A    + M++ S C+PD   Y+ LI   T  H  D  + +   
Sbjct: 110 IYSKLISVMGRKGQIRMAMWLFSQMRN-SGCRPDTSVYNSLIG--THLHSRDKSKALAKA 166

Query: 91  MSYL-------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           + Y          + + VTYN ++  + +A   ++++  F  + ES    PDI+T N ++
Sbjct: 167 LGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESP-VSPDIYTYNGVM 225

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            AYG +G I +ME           + D+ T NIL  SYGR   +DKM  V   + +    
Sbjct: 226 DAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEK 285

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT  T+N +I  +GKA   EK E    KM   G KPN +T   L+  Y+    + +   I
Sbjct: 286 PTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQI 345

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             ++ +S   +     N ++ AY   G   +  +L  ++ ++  VP   T+  + +AY  
Sbjct: 346 FDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYKLLYKAYTK 405

Query: 324 LGMTEAAQNLENKM 337
               +  Q L  +M
Sbjct: 406 ANDKKLIQKLLKRM 419



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 140/324 (43%), Gaps = 40/324 (12%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
           ++G+  Q   A  LF  M + G +P   VY +L+  +     +S  L +A      MK++
Sbjct: 117 VMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGTHLHSRDKSKALAKALGYFEKMKTI 176

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P++ TY+IL+++  +      ++ +  ++    +     TYN ++D YGK     E
Sbjct: 177 DRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVMDAYGKNGMITE 236

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           MES    M +S  C PD+ T N +I +YG     +KME+ +        K    T N + 
Sbjct: 237 MESVLVRM-KSNQCRPDVITFNILIDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMI 295

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK----- 233
            +YG+A + +K   V+D M +  F P  VT   +I  +     + +  + F ++      
Sbjct: 296 TNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQIFDELVSSQNN 355

Query: 234 ------------------------------HRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
                                          +G  P++ TY  L  AY+KA     +  +
Sbjct: 356 VHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYKLLYKAYTKANDKKLIQKL 415

Query: 264 LRQVENSDVILDTPFFNCIISAYG 287
           L+++ +  ++ +  FF   + A+G
Sbjct: 416 LKRMNSQGIVPNKKFFLDALEAFG 439



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 31/238 (13%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           Y+ +I   G+  +       FS M  SG C PD    NS+I  + +S +  K        
Sbjct: 111 YSKLISVMGRKGQIRMAMWLFSQMRNSG-CRPDTSVYNSLIGTHLHSRDKSK-------- 161

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
                         L K+ G    ++KM+++ D  Q     P +VTYNI++  F +AG  
Sbjct: 162 -------------ALAKALG---YFEKMKTI-DRCQ-----PNIVTYNILLRAFAQAGDT 199

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           ++++  FK +    + P+  TY  ++ AY K G+I +++S+L +++++    D   FN +
Sbjct: 200 KQLDILFKDLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNIL 259

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           I +YG+    +KM ++F ++      P + TF +MI  Y    + E A+ + +KM  M
Sbjct: 260 IDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEM 317


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 162/385 (42%), Gaps = 57/385 (14%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD----- 60
           K KQ  QA+ +F  M+  G +P+   Y ALV    ++G + +AF     +   SD     
Sbjct: 305 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 364

Query: 61  ----CK------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
               C+      P+V TY  L+    K H+ D   ++L  M   G E + + Y+ +IDG+
Sbjct: 365 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 424

Query: 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
            KA K +  +  F  M + G   P + T  S+I      G ++   K  ++        +
Sbjct: 425 CKAGKIDSAQEVFLQMTKCGYL-PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 483

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           + T   +     R G  +K   ++  M+++   P VVTY  +I+  GKAG I+   + F 
Sbjct: 484 VVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFT 543

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVD----------------------------- 261
           +M  +G  PN +TY  L++    AGL+ K                               
Sbjct: 544 QMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSF 603

Query: 262 ----SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-----DNI 312
                IL ++E+   +   P +  +I  + +AG +E   EL   M E   VP     DN 
Sbjct: 604 IASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME---VPSSVKTDND 660

Query: 313 TFATMIQAYNALGMTEAAQNLENKM 337
            +A++IQA       E A  L ++M
Sbjct: 661 MYASLIQALCLASQVEEAFRLYSEM 685



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 156/378 (41%), Gaps = 53/378 (14%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L + M+  G  P    Y+ +++    +  +++AF    +MK V    PDVYTY+I
Sbjct: 205 DKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVG-VTPDVYTYTI 263

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S  K    +  + +  EM  +G   + VTY  +I  Y KAK+  +    F  MV++G
Sbjct: 264 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 323

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD----------------IQTL 174
            C P+  T  +++     +GNI K  + Y +       AD                + T 
Sbjct: 324 -CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTY 382

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
             L     +A   D    ++D M      P  + Y+ +I+ F KAG I+  +E F +M  
Sbjct: 383 GALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 442

Query: 235 RG------------------------MK-----------PNSITYCSLVSAYSKAGLIMK 259
            G                        MK           PN +TY +++    + G   K
Sbjct: 443 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEK 502

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +L  +E      +   +  +I   G+AG ++   +LF  M  + C P+ +T+  +I 
Sbjct: 503 ALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLIN 562

Query: 320 AYNALGMTEAAQNLENKM 337
              A G+ + A+ L  +M
Sbjct: 563 HLCAAGLLDKARLLLGEM 580



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 157/357 (43%), Gaps = 40/357 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG CK+      +  +M+++G  P+  ++ +LV +Y        A+  +N M +   C P
Sbjct: 93  LGWCKR------IINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG-CPP 145

Query: 64  DVYTYSILIKSCTKFHRF------DLIEKILAEMSYLGIEC-----SAVTYNTIIDGYGK 112
               Y+I I S     +       DL EKI  EM  L   C     +   +   + G GK
Sbjct: 146 GYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEM--LAANCVLNKVNVANFARCLCGVGK 203

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
              F++       M+  G   PD  T + +I+   ++  +EK    + E  ++GV  D+ 
Sbjct: 204 ---FDKAFQLIKEMMRKGFV-PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVY 259

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T  IL  S+ +AG+ ++ + + + M+     PTVVTY  +I  + KA  + +  + F +M
Sbjct: 260 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 319

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF-FNC---------- 281
              G +PN +TY +LV    KAG I K   +  ++  +    D+ F F C          
Sbjct: 320 VDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNV 379

Query: 282 -----IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                ++    +A  V+   EL   M    C P++I +  +I  +   G  ++AQ +
Sbjct: 380 VTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 436



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 150/346 (43%), Gaps = 13/346 (3%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           CK+   A  L +++  +  K    + T ++S   ++   DEA S ++ M+  S C P+V 
Sbjct: 21  CKEGRWADAL-DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNS-CIPNVV 78

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY  L+    K  +    ++I+  M   G   +   +N+++  Y   K +       + M
Sbjct: 79  TYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRM 138

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNI------EKMEKWYNEFNLMGVKADIQTLNI--LT 178
             + GC P     N  I +      +      +  EK Y E  ++     +  +N+    
Sbjct: 139 T-TCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGE--MLAANCVLNKVNVANFA 195

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           +     G +DK   ++  M ++ F P   TY+ VI     A  +EK    F++MK  G+ 
Sbjct: 196 RCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVT 255

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+  TY  L+ ++ KAGLI +   +  ++ +         +  +I AY +A  V +  ++
Sbjct: 256 PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDI 315

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
           F  M +  C P+++T+  ++      G    A  +  K+I   +++
Sbjct: 316 FHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSA 361



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 4/187 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + + +  LF  M   G  P+   Y  L++    +GLLD+A   + +MK     K 
Sbjct: 529 LGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKY 588

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-EMESS 122
            +  Y   I+  +K   F     IL EM   G    A  Y  +ID + KA + E  ME  
Sbjct: 589 -LQGYRCAIQGFSK--SFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELH 645

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M        D     S+I A   +  +E+  + Y+E    G   ++     L K   
Sbjct: 646 KEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLV 705

Query: 183 RAGMYDK 189
               +D+
Sbjct: 706 EVKKWDE 712


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 171/375 (45%), Gaps = 39/375 (10%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G C+    E++  L E MLS GLK S+  YT L+S+  +SG +DEA   +++M+ +
Sbjct: 380 ILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVI 439

Query: 59  SDCKPDVYTYSILIKSCTKF----HRFDLIEKILAEMSYL-GIECSAVT----------- 102
              KPD+ TYS+LI    K        +L E++ ++  Y     CSA+            
Sbjct: 440 G-LKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISE 498

Query: 103 -------------------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
                              YN +IDGY K     E   S+  ++E G   P I T NS+I
Sbjct: 499 AQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKG-ISPTIVTFNSLI 557

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
             +   G + +  K  +   + G+     T   L   Y   G    M  ++  M+ +   
Sbjct: 558 YGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIK 617

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           PT +TY +V++   K G + +  +  K M  RG+ P+ ITY +++ ++ KA  + K   +
Sbjct: 618 PTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQL 677

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
             Q+    +      +N +I+     G+++    L +T++++      + + T+I+A+ A
Sbjct: 678 HNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCA 737

Query: 324 LGMTEAAQNLENKMI 338
            G  + A    ++M+
Sbjct: 738 KGDVQNALVFFHQMV 752



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 150/333 (45%), Gaps = 5/333 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+Q   + A         +   PSV  + AL+S + + G +D A S    M       
Sbjct: 244 GLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYG-LL 302

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDVY+Y+IL+         +   +   +M   G+E   VTYN + +G+            
Sbjct: 303 PDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKV 362

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+ +G  +PD+ T   +I  +   GNIE+  K   +    G+K  I T  +L  S  
Sbjct: 363 VQRMLLNG-LNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLC 421

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++G  D+   ++  M+     P ++TY+++I    K G +E+  E +++M  + + PNS 
Sbjct: 422 KSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSF 481

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
              +++S   + G I +       V  SDV  +   +N +I  Y + G++ +    +  +
Sbjct: 482 VCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQI 541

Query: 303 KERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
            E+   P  +TF ++I  +   G + EA + L+
Sbjct: 542 IEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLD 574



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 157/359 (43%), Gaps = 45/359 (12%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +M G CK    + A   F +M+  GL P V  Y  L+     +G ++EA    NDM++  
Sbjct: 276 LMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMEN-H 334

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIE---KILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
             +PD+ TY+IL      F    LI    K++  M   G+    VTY  +I G+ +    
Sbjct: 335 GVEPDIVTYNILANG---FRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNI 391

Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
           EE       M+ S G    I T   ++S+   SG I++     +E  ++G+K D+ T ++
Sbjct: 392 EESFKLKEKML-SQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSV 450

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPT------------------------------- 205
           L     + G  ++   + + M  +  +P                                
Sbjct: 451 LIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSD 510

Query: 206 ----VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
               ++ YNI+I+ + K G+I +    +K++  +G+ P  +T+ SL+  + K G + +  
Sbjct: 511 VAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAV 570

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
            +L  ++   ++  +  +  +++ Y + GD+  M ++   M+ +   P  IT+  +++ 
Sbjct: 571 KLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKG 629



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 145/313 (46%), Gaps = 9/313 (2%)

Query: 31  VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
           V+  L  AY ++ ++ +A   +  MK V + +  + TY+ L+ +       D++  +  E
Sbjct: 170 VWDMLACAYSRAEMVHDALFVLAKMK-VLNLQVSIATYNSLLYN---LRHTDIMWDVYNE 225

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH--PDIFTLNSMISAYGN 148
           +   G+  +  T   +IDG  +  + ++   + + + E+GG    P + + N+++S +  
Sbjct: 226 IKASGVPQNEYTNPILIDGLCRQSRLQD---AVTFLRETGGEEFGPSVVSFNALMSGFCK 282

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
            G+++  + ++      G+  D+ + NIL      AG  ++     + M+     P +VT
Sbjct: 283 MGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVT 342

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YNI+   F   G I    +  ++M   G+ P+ +TY  L+  + + G I +   +  ++ 
Sbjct: 343 YNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKML 402

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
           +  + L    +  ++S+  ++G +++   L   M+     PD +T++ +I      G  E
Sbjct: 403 SQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVE 462

Query: 329 AAQNLENKMIAMK 341
            A  L  +M + +
Sbjct: 463 EAIELYEEMCSKR 475



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/293 (19%), Positives = 126/293 (43%), Gaps = 2/293 (0%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           ++ ++  G+ P++  + +L+  + + G L EA   ++ +K V    P   TY+ L+    
Sbjct: 538 YKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIK-VHGLVPTSVTYTTLMNGYC 596

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
           +      +  +L EM    I+ + +TY  ++ G  K  +  E       M  + G  PD 
Sbjct: 597 EEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMY-ARGLFPDQ 655

Query: 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196
            T N++I ++  + +++K  + +N+     ++    T N+L       G       ++  
Sbjct: 656 ITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVT 715

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           +Q +    T V Y  +I+     G ++    +F +M  RG + +   Y ++++   K  L
Sbjct: 716 LQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNL 775

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           I         +    +  D      +++A+ ++GD   + E+F  M +   +P
Sbjct: 776 ITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 3/132 (2%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G CK+    ++  L + M + GL P    Y  ++ ++ ++  L +AF   N M   
Sbjct: 625 VVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQH 684

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S  +P   TY++LI     +      +++L  +    I  + V Y TII  +      + 
Sbjct: 685 S-LQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQN 743

Query: 119 MESSFSAMVESG 130
               F  MVE G
Sbjct: 744 ALVFFHQMVERG 755


>gi|326529783|dbj|BAK04838.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 490

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 157/334 (47%), Gaps = 5/334 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P+     F  +L  G+ P V  Y++L+  +      +EA   +  +  VS   PD  +Y
Sbjct: 114 RPDLGPAFFGRLLKTGITPDVITYSSLLQCFCDMKRTEEALDLL--LHRVSGDLPDAISY 171

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIE--CSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           S+++KS     R      +L  M+  G E   S V+YN +I G+ K  +  +    F  M
Sbjct: 172 SVILKSFCDDGRSQCALDLLRMMAEKGAEHSPSVVSYNLVIHGFFKEGEISKACHLFHGM 231

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           ++ G   PD+ T NS+I+A   +  ++K E          V+ D  T N L   Y   G 
Sbjct: 232 IQQGYV-PDVVTYNSVINALCKARAMDKAEVVLRSMVHNSVQPDAVTYNSLIHGYLILGQ 290

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
             +   ++  M+ +   P++VT + V++   K G I++ EE F      G KP+ + Y  
Sbjct: 291 LKETFRLLKVMRSQGVMPSLVTCSSVMDYLCKHGKIKEAEEMFYSRAVNGRKPDIVLYSI 350

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           ++  Y+  G ++K+  +   +    V+ D P FN +I+AY + G ++     F  M ++ 
Sbjct: 351 MLHGYAIEGSLVKMIDLCEVMARDGVVPDLPCFNILINAYAKYGMMDVAMLFFEDMLKQG 410

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             P+  T+ T+I A+  +G  + A    ++MI M
Sbjct: 411 VKPNEFTYLTVISAFCKMGRMDDAMEKFSEMIDM 444



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 129/277 (46%), Gaps = 2/277 (0%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           PSV  Y  ++  + + G + +A    + M       PDV TY+ +I +  K    D  E 
Sbjct: 203 PSVVSYNLVIHGFFKEGEISKACHLFHGMIQ-QGYVPDVVTYNSVINALCKARAMDKAEV 261

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +L  M +  ++  AVTYN++I GY    + +E       M  S G  P + T +S++   
Sbjct: 262 VLRSMVHNSVQPDAVTYNSLIHGYLILGQLKETFRLLKVM-RSQGVMPSLVTCSSVMDYL 320

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G I++ E+ +    + G K DI   +I+   Y   G   KM  + + M +    P +
Sbjct: 321 CKHGKIKEAEEMFYSRAVNGRKPDIVLYSIMLHGYAIEGSLVKMIDLCEVMARDGVVPDL 380

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
             +NI+I  + K G ++    +F+ M  +G+KPN  TY +++SA+ K G +        +
Sbjct: 381 PCFNILINAYAKYGMMDVAMLFFEDMLKQGVKPNEFTYLTVISAFCKMGRMDDAMEKFSE 440

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + +  V LDT  + C++  Y   GD  K  E    MK
Sbjct: 441 MIDMGVPLDTEVYMCMVEGYLNHGDSMKAEEFITKMK 477



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 118/261 (45%), Gaps = 2/261 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A  LF  M+  G  P V  Y ++++A  ++  +D+A   +  M   S  +PD  TY+ L
Sbjct: 223 KACHLFHGMIQQGYVPDVVTYNSVINALCKARAMDKAEVVLRSMVHNS-VQPDAVTYNSL 281

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I       +     ++L  M   G+  S VT ++++D   K  K +E E  F +   +G 
Sbjct: 282 IHGYLILGQLKETFRLLKVMRSQGVMPSLVTCSSVMDYLCKHGKIKEAEEMFYSRAVNGR 341

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             PDI   + M+  Y   G++ KM          GV  D+   NIL  +Y + GM D   
Sbjct: 342 -KPDIVLYSIMLHGYAIEGSLVKMIDLCEVMARDGVVPDLPCFNILINAYAKYGMMDVAM 400

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
              + M K+   P   TY  VI  F K G ++   E F +M   G+  ++  Y  +V  Y
Sbjct: 401 LFFEDMLKQGVKPNEFTYLTVISAFCKMGRMDDAMEKFSEMIDMGVPLDTEVYMCMVEGY 460

Query: 252 SKAGLIMKVDSILRQVENSDV 272
              G  MK +  + +++N D+
Sbjct: 461 LNHGDSMKAEEFITKMKNMDI 481


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 153/339 (45%), Gaps = 4/339 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +++G CK    + A  +F+ M+ DG  P+   Y+AL++     G L+EA   + +M    
Sbjct: 243 LIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMID-K 301

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
             +P V+ Y+I I S     R     K+L +M   G   +  TY  +I G  +  KFE  
Sbjct: 302 GIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVA 361

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              +  M+ + G  P   T +++I+     G  E     +          + +T N++ K
Sbjct: 362 IGVYHKML-ADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIK 420

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +   G   K  ++ D M K    P V+TYNI+I  + K G++       + MK  G+K 
Sbjct: 421 GFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKL 480

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           ++ TY +L+S +S+ G +    S+  ++    +  +   +N II+ Y     V+    LF
Sbjct: 481 DTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALF 540

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             M E   VP + T+  MI  ++       A+N   KM+
Sbjct: 541 WKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMV 579



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 144/329 (43%), Gaps = 4/329 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYS 69
           ++A L+   +   G  P    YT+L+  + ++G LD AF   + M  V D C P+  TYS
Sbjct: 219 QEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRM--VKDGCDPNSVTYS 276

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            LI       R +    +L EM   GIE +   Y   I     A +  E       M + 
Sbjct: 277 ALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKM-KK 335

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
            GC P++ T  ++IS     G  E     Y++    G+     T + L       G ++ 
Sbjct: 336 RGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFET 395

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
             ++ ++M      P   TYN++I+ F   G+I+K    F +M   G  PN ITY  ++ 
Sbjct: 396 ALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIH 455

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
            Y K G +     +L  ++ + + LDT  +  +IS + + G +E    LF  M E    P
Sbjct: 456 IYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISP 515

Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMI 338
           + +T+  +I  Y  +   + A  L  KM+
Sbjct: 516 NVVTYNAIINGYLTVAKVDDALALFWKMV 544



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 155/331 (46%), Gaps = 10/331 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  + E M+  G++P+V  YT  + +   +G   EA   +  MK    C P+V TY+ 
Sbjct: 289 EEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKK-RGCGPNVQTYTA 347

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI   ++  +F++   +  +M   G+  +AVTY+ +I+      +FE   + F  M+ S 
Sbjct: 348 LISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWML-SH 406

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P+  T N +I  + + G I+K    +++    G   ++ T NI+   Y + G  +  
Sbjct: 407 DSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNA 466

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M+         TY  +I  F + G +E     F +M   G+ PN +TY ++++ 
Sbjct: 467 MRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIING 526

Query: 251 YSKAGLIMKVDSIL----RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           Y     + KVD  L    + VE+ +V   +  +N +IS + +   + +       M ++ 
Sbjct: 527 YLT---VAKVDDALALFWKMVESGNVP-SSGTYNMMISGFSKTNRISEAENFCGKMVKQG 582

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +P+ IT+ + I      G T  A  + ++M
Sbjct: 583 LLPNVITYTSFIDGLCKNGRTSLAFKIFHEM 613



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 146/334 (43%), Gaps = 6/334 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ +F+ ML  G  P+V  Y  ++  Y + G ++ A   +  MK  +  K D +TY+ 
Sbjct: 429 QKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKG-NGLKLDTWTYAN 487

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI   ++  + +    +  EM   GI  + VTYN II+GY    K ++  + F  MVESG
Sbjct: 488 LISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESG 547

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P   T N MIS +  +  I + E +  +    G+  ++ T         + G     
Sbjct: 548 NV-PSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLA 606

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M+KR +FP + TY+ +I+   + G  E  E    ++   G +PN  TY +LV  
Sbjct: 607 FKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAE----RLLDDGCEPNVDTYTTLVRG 662

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
               G   + D ++  ++   +      +  ++    +  +VE   ++F +M      P 
Sbjct: 663 LCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPC 722

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
              +  +I A       + AQ +   M+    NS
Sbjct: 723 LSDYKALICALCKANFRQKAQCMFQTMLKKHWNS 756



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 114/265 (43%), Gaps = 12/265 (4%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  +FE MLS    P+ + Y  ++  +   G + +A +  + M       P+V TY+I
Sbjct: 394 ETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGP-SPNVITYNI 452

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I    K    +   ++L  M   G++    TY  +I G+ +  K E   S F+ MVE G
Sbjct: 453 IIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHG 512

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P++ T N++I+ Y     ++     + +    G      T N++   + +     + 
Sbjct: 513 -ISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEA 571

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            +    M K+   P V+TY   I+   K G      + F +MK R   PN  TY SL+  
Sbjct: 572 ENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDG 631

Query: 251 YSKAGLIMKVDSILRQVENSDVILD 275
             + G          Q E+++ +LD
Sbjct: 632 LCQEG----------QAEDAERLLD 646



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 133/312 (42%), Gaps = 1/312 (0%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P+ +V   ++ +    G +      ++++ +  D    +Y++S L+    KF    L   
Sbjct: 129 PADNVRILMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRD 188

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  EM   GI  +  T+N +I       K +E E     +   G C PD FT  S+I  +
Sbjct: 189 VYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGAC-PDTFTYTSLIIGH 247

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
             +GN++   + ++     G   +  T + L       G  ++   +++ M  +   PTV
Sbjct: 248 CKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTV 307

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
             Y I I +   AG   +  +   KMK RG  PN  TY +L+S  S+ G       +  +
Sbjct: 308 HAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHK 367

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           +    ++     ++ +I+     G  E    +F  M     +P+  T+  +I+ + ++G 
Sbjct: 368 MLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGY 427

Query: 327 TEAAQNLENKMI 338
            + A  + ++M+
Sbjct: 428 IQKATAIFDQML 439



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 112/271 (41%), Gaps = 2/271 (0%)

Query: 70  ILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           ++IKSC        + ++L+E+ +      +  +++T++   GK          +  M+ 
Sbjct: 136 LMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLN 195

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
           SG   P++FT N+MI    N G +++ E         G   D  T   L   + + G  D
Sbjct: 196 SG-IRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLD 254

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
               + D M K    P  VTY+ +I      G +E+  +  ++M  +G++P    Y   +
Sbjct: 255 LAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPI 314

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
            +   AG   +   +L +++      +   +  +IS   + G  E    ++  M     V
Sbjct: 315 VSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLV 374

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           P  +T++ +I      G  E A  +   M++
Sbjct: 375 PTAVTYSALINQLYVEGRFETALTIFEWMLS 405


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 153/322 (47%), Gaps = 2/322 (0%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
           +A +L   M+ +G +P+V  Y ++V+   +SG    A   +  M    + K DV+TYS +
Sbjct: 153 EAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDE-RNVKADVFTYSTI 211

Query: 72  IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
           I S  +    D    +  EM   GI+ S VTYN+++ G  KA K+ +       M  S  
Sbjct: 212 IDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMT-SRK 270

Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
             P++ T N +I  +   G +++  + Y E    G+  +  T N L   Y       +  
Sbjct: 271 IIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEAN 330

Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
           +++D M +    P +VT+  +I+ + K   +++  + F+K+  RG+  N++TY  LV  +
Sbjct: 331 NMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGF 390

Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
            ++G +   + + +++ +  V+ D   +  ++      G +EK  E+F  +++     D 
Sbjct: 391 CQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDI 450

Query: 312 ITFATMIQAYNALGMTEAAQNL 333
           + +  +I+     G  E A NL
Sbjct: 451 VMYTIIIEGMCKGGKVEDAWNL 472



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 141/323 (43%), Gaps = 37/323 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M + G+K S+  Y +LV    ++G  ++    + DM S     P+V T+++LI   
Sbjct: 227 LFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTS-RKIIPNVITFNVLIDVF 285

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +     ++  EM   GI  + +TYN+++DGY    +  E  +    MV +  C PD
Sbjct: 286 VKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNN-CSPD 344

Query: 136 IFTLNSMISAYG-----------------------------------NSGNIEKMEKWYN 160
           I T  S+I  Y                                     SG +E  E+ + 
Sbjct: 345 IVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQ 404

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E   +GV  D+ T  IL       G  +K   + + +QK      +V Y I+IE   K G
Sbjct: 405 EMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGG 464

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            +E     F  +  +G+KPN +TY  ++S   K G + + + +LR++E      +   +N
Sbjct: 465 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYN 524

Query: 281 CIISAYGQAGDVEKMGELFLTMK 303
            +I A+ + GD+    +L   MK
Sbjct: 525 TLIRAHLRDGDLTASAKLIEEMK 547



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 168/367 (45%), Gaps = 37/367 (10%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           + + A  LF+ M+     PS+  ++   S    +   +        M+ ++    ++YT 
Sbjct: 45  KEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKME-LNGIAHNIYTL 103

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           +I+I    +  +      +L ++  LG E    T+NT+I+G     K  E     + MVE
Sbjct: 104 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVE 163

Query: 129 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEK------------------------ 157
           +G C P++ T NS+++    SG+       + KM++                        
Sbjct: 164 NG-CQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCID 222

Query: 158 ----WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
                + E    G+K+ + T N L     +AG ++    ++  M  R   P V+T+N++I
Sbjct: 223 AAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLI 282

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
           + F K G +++  E +K+M  +G+ PN+ITY SL+  Y     + + +++L  +  ++  
Sbjct: 283 DVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCS 342

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            D   F  +I  Y +   V++  +LF  + +R  V + +T++ ++Q +   G  E A+ L
Sbjct: 343 PDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEEL 402

Query: 334 ENKMIAM 340
             +M+++
Sbjct: 403 FQEMVSL 409



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 124/245 (50%), Gaps = 2/245 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A+ L++ M++ G+ P+   Y +L+  Y     L EA + + D+   ++C PD+ T++ 
Sbjct: 292 QEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNML-DLMVRNNCSPDIVTFTS 350

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LIK   K  R D   K+  ++S  G+  + VTY+ ++ G+ ++ K E  E  F  MV S 
Sbjct: 351 LIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMV-SL 409

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  PD+ T   ++    ++G +EK  + + +     +  DI    I+ +   + G  +  
Sbjct: 410 GVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDA 469

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            ++   +  +   P V+TY ++I    K G + +     +KM+  G +PN  TY +L+ A
Sbjct: 470 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRA 529

Query: 251 YSKAG 255
           + + G
Sbjct: 530 HLRDG 534


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 155/358 (43%), Gaps = 38/358 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E    L E+ L +G KP   +Y +++  +G++G+  EA S + +M+  ++C PD  TY+ 
Sbjct: 305 EARKFLAELKL-NGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMED-NNCPPDSITYNE 362

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L  +  +    D    ++  M+  G+  +A+TY T+ID YGKA + ++    FS M +  
Sbjct: 363 LAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKM-KDL 421

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-------------------------- 164
           GC P+++T NS+++  G     E + K   E  L                          
Sbjct: 422 GCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYV 481

Query: 165 ---------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
                     G + D  T N L  SY R G       +   M K  F P V TYN ++  
Sbjct: 482 NKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNA 541

Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
               G  +  E   + M+ +G KPN  +Y  L+  YSKAG +  ++ + +++ +  V   
Sbjct: 542 LAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPS 601

Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
                 ++ +  +   +  M   F  +++    PD +   +M+  ++   M   A+ +
Sbjct: 602 WILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREM 659



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 158/346 (45%), Gaps = 7/346 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYS 69
           ++A  LF+ M   GL P++  Y  ++  YG+ G         +++M+S    + D +T S
Sbjct: 233 KRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRS-KGLEFDEFTCS 291

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            +I +C +    D   K LAE+   G +   V YN+++  +GKA  + E  S    M E 
Sbjct: 292 TVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEM-ED 350

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
             C PD  T N + + Y  +G +++     +     GV  +  T   +  +YG+AG  D 
Sbjct: 351 NNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDD 410

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              +   M+     P V TYN V+   GK    E + +   +MK  G  PN  T+ ++++
Sbjct: 411 ALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLA 470

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
             S+ G    V+ +LR+++N     D   FN +IS+Y + G      +++  M +    P
Sbjct: 471 VCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTP 530

Query: 310 DNITFATMIQAYNALGMTEAA----QNLENKMIAMKENSGKKLIQC 351
              T+  ++ A    G  +AA    Q+++ K     E S   L+ C
Sbjct: 531 CVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHC 576



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 147/324 (45%), Gaps = 3/324 (0%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +LG+  Q   AS LF+++  +     V  YT ++ AY +SG    A    + M+ +    
Sbjct: 190 ILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIG-LD 248

Query: 63  PDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P + TY++++    K  R +  I ++L EM   G+E    T +T+I   G+    +E   
Sbjct: 249 PTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEAR- 307

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F A ++  G  P     NSM+  +G +G   +      E        D  T N L  +Y
Sbjct: 308 KFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATY 367

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            RAG  D+  +V+D M  +   P  +TY  VI+ +GKAG  +     F KMK  G  PN 
Sbjct: 368 VRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNV 427

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY S+++   K      V  +L +++ +    +   +N +++   + G    + ++   
Sbjct: 428 YTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLRE 487

Query: 302 MKERHCVPDNITFATMIQAYNALG 325
           MK     PD  TF T+I +Y   G
Sbjct: 488 MKNCGFEPDKDTFNTLISSYARCG 511



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/420 (20%), Positives = 178/420 (42%), Gaps = 74/420 (17%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           GK  + + A  LF  M   G  P+V  Y ++++  G+    ++    + +MK ++ C P+
Sbjct: 403 GKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMK-LNGCAPN 461

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-------AKKFE 117
             T++ ++  C++  + + + K+L EM   G E    T+NT+I  Y +       AK + 
Sbjct: 462 RATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYG 521

Query: 118 EM-ESSFSAMV--------------------------ESGGCHPDIFTLNSMISAYGNSG 150
           EM +S F+  V                          ++ G  P+  + + ++  Y  +G
Sbjct: 522 EMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAG 581

Query: 151 N---IEKMEK----------W----------------------YNEFNLMGVKADIQTLN 175
           N   IEK+EK          W                      +++    G K D+  +N
Sbjct: 582 NVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVIN 641

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            +   + R  M+ K R ++ F+ +    P + TYN +++ + +     K EE  K +++ 
Sbjct: 642 SMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNS 701

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
             +P+ ++Y +++  + + GL+ +   +L ++    +      +N  +S Y      ++ 
Sbjct: 702 VPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEA 761

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM----IAMKENSGKKLIQC 351
            E+   M E +C P  +T+  ++  Y   G  E A +   K+    I+  + S K+L  C
Sbjct: 762 NEVIRFMIEHNCRPSELTYKILVDGYCKAGKHEEAMDFVTKIKEIDISFDDKSVKRLGSC 821



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 23/222 (10%)

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM-----EKWYNEFNLMGVKA 169
           KFE +E+ F                 S++ A   SGN E+        W +  +   ++ 
Sbjct: 136 KFELLEADFP----------------SLLKALDLSGNWERALLLFEWGWLHFGSDQNLRL 179

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           D Q + ++ +  GR   +     + D +    +   V  Y  ++  + ++G  ++  + F
Sbjct: 180 DNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLF 239

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIM-KVDSILRQVENSDVILDTPFFNCIISAYGQ 288
            KM+  G+ P  +TY  ++  Y K G    ++  +L ++ +  +  D    + +ISA G+
Sbjct: 240 DKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGR 299

Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM-TEA 329
            G +++  +    +K     P  + + +M+Q +   G+ TEA
Sbjct: 300 EGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEA 341


>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like, partial [Glycine max]
          Length = 594

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 162/340 (47%), Gaps = 7/340 (2%)

Query: 9   QPEQASLLFE-VMLSDGLKPSVDVYT--ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           QP  A  LF+  ++      S+DV+T   LV      G +DEA    ++M+S+    PDV
Sbjct: 114 QPHLAFQLFQNELIXXXXXXSIDVWTYNTLVKGLCDEGKIDEAIRVRDEMESLK-LIPDV 172

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
            TY+ LI  C K+       ++L EM S  G+E +AVT+N ++  +GK  K  E   +  
Sbjct: 173 VTYNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVV 232

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            MVESG   PD FT N+MI+ +  +G + +  +  +E    G+K DI TLN +  +    
Sbjct: 233 KMVESG-VSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCME 291

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
              ++   +    +KR +    VTY  +I  + K    +K  + +++MK RG+ P+ ++Y
Sbjct: 292 KKPEEAYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSY 351

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             L+     +G   +    L ++    ++ D    N II  Y   G V+K  +    M  
Sbjct: 352 NPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVG 411

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
               PD  T   +++    + M E A  L N  I+ K+NS
Sbjct: 412 NSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWIS-KQNS 450



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 131/298 (43%), Gaps = 3/298 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            GK  +  +AS     M+  G+ P    Y  +++ + ++G L EAF  +++M +    KP
Sbjct: 218 FGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEM-ARKGLKP 276

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+ T + ++ +     + +   ++  +    G     VTY T+I GY K K+ ++    +
Sbjct: 277 DICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLW 336

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M +  G  P + + N +I     SG  ++     NE    G+  D  + NI+   Y  
Sbjct: 337 EEM-KKRGIVPSVVSYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCW 395

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            GM DK     + M    F P + T NI++    +   +EK  + F     +    + +T
Sbjct: 396 EGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQNSVDVVT 455

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           Y +++S   K G + +   ++  +E      D   +N I+ A   AG  E+  E F++
Sbjct: 456 YNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTYNAIVRALTHAGRTEE-AEKFMS 512


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 157/325 (48%), Gaps = 5/325 (1%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +++ M+   ++P++  +  +++   + G L++A   I DMK V     +V TY+ LI   
Sbjct: 150 VYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMK-VRGVSANVITYNTLIDGY 208

Query: 76  TKFHRFDLIEK---ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
            K  +   + K   IL EM   GI  + VT+N +IDG+ K K        F+ M    G 
Sbjct: 209 CKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEM-NRQGV 267

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
            P++ T NS+I+   N+G + +     ++     +K +I T N L   + +  M  +   
Sbjct: 268 KPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGE 327

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           + D M K+   P V TYNI+I+ + K  ++E     ++ M  +G+ P+  TY  L++   
Sbjct: 328 LFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLC 387

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           + G +    +++ +++   +  D   +N +I +    G+++K   L   M  +   P  +
Sbjct: 388 RKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQL 447

Query: 313 TFATMIQAYNALGMTEAAQNLENKM 337
           T+ TMI  Y   G   AA NL ++M
Sbjct: 448 TYNTMIDGYCKEGNLRAALNLRSQM 472



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 145/323 (44%), Gaps = 17/323 (5%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV------SDCKPDVYTYSILIKSCTK 77
           GLK SV     L+S   + G        I DM+ V         +P + +++I+I    K
Sbjct: 123 GLKLSVTSCNPLMSGLVKVG-------EIGDMEFVYKEMIRRRIEPTLISFNIVINGLCK 175

Query: 78  FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESGGCHP 134
             + +    I+ +M   G+  + +TYNT+IDGY   GK  K  + ++    M   G C P
Sbjct: 176 VGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGIC-P 234

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
           +  T N +I  +    N+    K + E N  GVK ++ T N L       G  ++  ++ 
Sbjct: 235 NEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALR 294

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
           D M      P ++T+N ++  F K   +++  E F  M  +G+ PN  TY  L+ AY K 
Sbjct: 295 DQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKD 354

Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
             +    ++ R +    V  D   +NC+I+   + GD+E    L   M  +H   D IT+
Sbjct: 355 ENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITY 414

Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
             +I +    G  + A  L ++M
Sbjct: 415 NILIDSLCNKGEMKKALRLLDEM 437



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 40/353 (11%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAY---GQSGLLDEAFSTINDM 55
           +V+ G CK  +  +A  + E M   G+  +V  Y  L+  Y   G+ G + +A + + +M
Sbjct: 168 IVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEM 227

Query: 56  KSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
           ++   C P+  T++ILI    K        K+ AEM+  G++ + VTYN++I+G     K
Sbjct: 228 RADGIC-PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGK 286

Query: 116 FEEMESSFSAMVES----------------------------------GGCHPDIFTLNS 141
             E  +    MV S                                   G  P++ T N 
Sbjct: 287 VNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNI 346

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           +I AY    N+E     Y      GV  D+ T N L     R G  +  R+++  M  + 
Sbjct: 347 LIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKH 406

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
               ++TYNI+I++    G ++K      +M  +G+KP+ +TY +++  Y K G +    
Sbjct: 407 LKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAAL 466

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
           ++  Q+E    + +   +N +I  + +   +E    L   M E+  +P+ +T+
Sbjct: 467 NLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTY 519



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 39/298 (13%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC-KPD 64
           K K    A  +F  M   G+KP+V  Y +L++    +G ++EA +  + M  V+ C KP+
Sbjct: 248 KDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQM--VNSCLKPN 305

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + T++ L+    K        ++  +M   GI  +  TYN +ID Y K +  E+  + + 
Sbjct: 306 IITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYR 365

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M+  G C PD+ T N +I+     G++E      +E +   +KAD+ T NIL  S    
Sbjct: 366 IMLGKGVC-PDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNK 424

Query: 185 GMYDKMRSVMDFMQKRFFFPT-----------------------------------VVTY 209
           G   K   ++D M ++   P+                                   V TY
Sbjct: 425 GEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATY 484

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           N++I+ F K   +E       +M  +G+ PN +TY  +     + G +  ++  L +V
Sbjct: 485 NVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPDIEGHLYKV 542



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 3/176 (1%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           G+K  + + N L     + G    M  V   M +R   PT++++NIVI    K G + K 
Sbjct: 123 GLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKA 182

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI---MKVDSILRQVENSDVILDTPFFNCI 282
            +  + MK RG+  N ITY +L+  Y K G I    K D+IL+++    +  +   FN +
Sbjct: 183 GDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNIL 242

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           I  + +  +V    ++F  M  +   P+ +T+ ++I      G    A  L ++M+
Sbjct: 243 IDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMV 298


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 162/385 (42%), Gaps = 57/385 (14%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD----- 60
           K KQ  QA+ +F  M+  G +P+   Y ALV    ++G + +AF     +   SD     
Sbjct: 370 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 429

Query: 61  ----CK------PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
               C+      P+V TY  L+    K H+ D   ++L  M   G E + + Y+ +IDG+
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 489

Query: 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
            KA K +  +  F  M + G   P + T  S+I      G ++   K  ++        +
Sbjct: 490 CKAGKIDSAQEVFLQMTKCGYL-PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           + T   +     R G  +K   ++  M+++   P VVTY  +I+  GKAG I+   + F 
Sbjct: 549 VVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFT 608

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVD----------------------------- 261
           +M  +G  PN +TY  L++    AGL+ K                               
Sbjct: 609 QMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSF 668

Query: 262 ----SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-----DNI 312
                IL ++E+   +   P +  +I  + +AG +E   EL   M E   VP     DN 
Sbjct: 669 IASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMME---VPSSVKTDND 725

Query: 313 TFATMIQAYNALGMTEAAQNLENKM 337
            +A++IQA       E A  L ++M
Sbjct: 726 MYASLIQALCLASQVEEAFRLYSEM 750



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 156/378 (41%), Gaps = 53/378 (14%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  L + M+  G  P    Y+ +++    +  +++AF    +MK V    PDVYTY+I
Sbjct: 270 DKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVG-VTPDVYTYTI 328

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI S  K    +  + +  EM  +G   + VTY  +I  Y KAK+  +    F  MV++G
Sbjct: 329 LIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAG 388

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD----------------IQTL 174
            C P+  T  +++     +GNI K  + Y +       AD                + T 
Sbjct: 389 -CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTY 447

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
             L     +A   D    ++D M      P  + Y+ +I+ F KAG I+  +E F +M  
Sbjct: 448 GALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 507

Query: 235 RG------------------------MK-----------PNSITYCSLVSAYSKAGLIMK 259
            G                        MK           PN +TY +++    + G   K
Sbjct: 508 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEK 567

Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
              +L  +E      +   +  +I   G+AG ++   +LF  M  + C P+ +T+  +I 
Sbjct: 568 ALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLIN 627

Query: 320 AYNALGMTEAAQNLENKM 337
              A G+ + A+ L  +M
Sbjct: 628 HLCAAGLLDKARLLLGEM 645



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 159/361 (44%), Gaps = 40/361 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG CK+      +  +M+++G  P+  ++ +LV +Y        A+  +N M +   C P
Sbjct: 158 LGWCKR------IINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG-CPP 210

Query: 64  DVYTYSILIKSCTKFHRF------DLIEKILAEMSYLGIEC-----SAVTYNTIIDGYGK 112
               Y+I I S     +       DL EKI  EM  L   C     +   +   + G GK
Sbjct: 211 GYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEM--LAANCVLNKVNVANFARCLCGVGK 268

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
              F++       M+  G   PD  T + +I+   ++  +EK    + E  ++GV  D+ 
Sbjct: 269 ---FDKAFQLIKEMMRKGFV-PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVY 324

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T  IL  S+ +AG+ ++ + + + M+     PTVVTY  +I  + KA  + +  + F +M
Sbjct: 325 TYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 384

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF-FNC---------- 281
              G +PN +TY +LV    KAG I K   +  ++  +    D+ F F C          
Sbjct: 385 VDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNV 444

Query: 282 -----IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
                ++    +A  V+   EL   M    C P++I +  +I  +   G  ++AQ +  +
Sbjct: 445 VTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQ 504

Query: 337 M 337
           M
Sbjct: 505 M 505



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 152/349 (43%), Gaps = 19/349 (5%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           CK+   A  L +++  +  K    + T ++S   ++   DEA S ++ M+  S C P+V 
Sbjct: 86  CKEGRWADAL-DMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNS-CIPNVV 143

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY  L+    K  +    ++I+  M   G   +   +N+++  Y   K +       + M
Sbjct: 144 TYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRM 203

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKM---------EKWYNEFNLMGVKADIQTLNI- 176
             + GC P     N  I   G+    EK+         EK Y E  ++     +  +N+ 
Sbjct: 204 T-TCGCPPGYVVYNIFI---GSICGQEKLPSPDLLDLAEKIYGE--MLAANCVLNKVNVA 257

Query: 177 -LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
              +     G +DK   ++  M ++ F P   TY+ VI     A  +EK    F++MK  
Sbjct: 258 NFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMV 317

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G+ P+  TY  L+ ++ KAGLI +   +  ++ +         +  +I AY +A  V + 
Sbjct: 318 GVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQA 377

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
            ++F  M +  C P+++T+  ++      G    A  +  K+I   +++
Sbjct: 378 NDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSA 426



 Score = 44.3 bits (103), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 3/120 (2%)

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
           + P+ VTYN +++    AG ++      K+M   G   +  T      A  K G   +  
Sbjct: 36  YRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEG---RWA 92

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             L  +E  D  LDT     +IS   +A   ++       M+   C+P+ +T+ T++  +
Sbjct: 93  DALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGF 152



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 4/187 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK  + + +  LF  M   G  P+   Y  L++    +GLLD+A   + +MK     K 
Sbjct: 594 LGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKY 653

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-EMESS 122
            +  Y   I+  +K   F     IL EM   G    A  Y  +ID + KA + E  ME  
Sbjct: 654 -LQGYRCAIQGFSK--SFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELH 710

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M        D     S+I A   +  +E+  + Y+E    G   ++     L K   
Sbjct: 711 KEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLV 770

Query: 183 RAGMYDK 189
               +D+
Sbjct: 771 EVKKWDE 777


>gi|302776756|ref|XP_002971525.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
 gi|300160657|gb|EFJ27274.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
          Length = 356

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 153/331 (46%), Gaps = 11/331 (3%)

Query: 3   MLGKCKQPEQASLLFE---VMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +L + +  E A  LF+   +   D L+P    Y A+++AY Q+    +A+     M +  
Sbjct: 5   ILSRARLIEDAEELFQWIKLQDWDKLRP----YNAMIAAYYQAKRPKDAWDVYYQMLA-E 59

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
              PD  TY IL+    K      I+++  E+   G+  +  +YN +I  + K    +++
Sbjct: 60  GIDPDDVTYDILVSGSGK--NGYPIDRLFLEIKSRGVALTLRSYNVVICAFTKEGSIDKV 117

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E     M+      PD+F+ N++I+AY  S   E+  + ++     GV  DI T   L +
Sbjct: 118 EEVIREMIRQE-LRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQ 176

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            + R+ M+ +   + + M      P    Y++++  +GKAG +      F +++  G +P
Sbjct: 177 MFSRSAMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQLEGHRP 236

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N +TY SL+SA+   GL+ +      Q+E      D    N +I AY +AG V     L 
Sbjct: 237 NIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAGMVNDAANLL 296

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAA 330
             +  +   P+  ++A +++ +   G  + A
Sbjct: 297 HRLTAQGVCPNRASYAIIVEGFLHAGHVDEA 327



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 142/300 (47%), Gaps = 6/300 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPD 64
           + K+P+ A  ++  ML++G+ P    Y  LVS  G++G  +D  F  I         +  
Sbjct: 42  QAKRPKDAWDVYYQMLAEGIDPDDVTYDILVSGSGKNGYPIDRLFLEIKSRGVALTLR-- 99

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             +Y+++I + TK    D +E+++ EM    +     ++N +I  Y  ++K E     FS
Sbjct: 100 --SYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFS 157

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
            M ++ G  PDI T  ++I  +  S   ++  + + E  +   + D    ++L   YG+A
Sbjct: 158 NM-KAAGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKA 216

Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
           G+      +   +Q     P +VTY  +I      G +E+  ++F +M+  G + +    
Sbjct: 217 GLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLL 276

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
            +++ AY+KAG++    ++L ++    V  +   +  I+  +  AG V++    + +M E
Sbjct: 277 NTMIDAYAKAGMVNDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHVDEALAAYASMSE 336



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 111/221 (50%), Gaps = 6/221 (2%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK--SCTK 77
           M+   L+P +  + AL++AY  S   +      ++MK+ +   PD+ TY+ LI+  S + 
Sbjct: 124 MIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKA-AGVLPDIVTYTTLIQMFSRSA 182

Query: 78  FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
            H+ + IE +  EM     +     Y+ ++  YGKA    +    F  + +  G  P+I 
Sbjct: 183 MHK-EAIE-MFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRL-QLEGHRPNIV 239

Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
           T  S+ISA+ + G +E+  K +++    G +AD+  LN +  +Y +AGM +   +++  +
Sbjct: 240 TYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLHRL 299

Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             +   P   +Y I++E F  AGH+++    +  M   G K
Sbjct: 300 TAQGVCPNRASYAIIVEGFLHAGHVDEALAAYASMSEAGFK 340



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 121/237 (51%), Gaps = 3/237 (1%)

Query: 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
           YN +I  Y +AK+ ++    +  M+ + G  PD  T + ++S  G +G    +++ + E 
Sbjct: 33  YNAMIAAYYQAKRPKDAWDVYYQML-AEGIDPDDVTYDILVSGSGKNGY--PIDRLFLEI 89

Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
              GV   +++ N++  ++ + G  DK+  V+  M ++   P + ++N +I  +  +   
Sbjct: 90  KSRGVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSRKP 149

Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
           E+  + F  MK  G+ P+ +TY +L+  +S++ +  +   +  ++  +    D   ++ +
Sbjct: 150 ERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFVYSLL 209

Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +S YG+AG V     +F  ++     P+ +T+ ++I A+   G+ E ++   ++M A
Sbjct: 210 VSVYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEA 266



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 77/138 (55%), Gaps = 2/138 (1%)

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P  VTY+I++   GK G+   ++  F ++K RG+     +Y  ++ A++K G I KV+ +
Sbjct: 63  PDDVTYDILVSGSGKNGY--PIDRLFLEIKSRGVALTLRSYNVVICAFTKEGSIDKVEEV 120

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           +R++   ++  D   FN +I+AY  +   E+  ++F  MK    +PD +T+ T+IQ ++ 
Sbjct: 121 IREMIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSR 180

Query: 324 LGMTEAAQNLENKMIAMK 341
             M + A  +  +M+  K
Sbjct: 181 SAMHKEAIEMFEEMVVNK 198


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 143/279 (51%), Gaps = 2/279 (0%)

Query: 30  DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
           DV   ++ AY ++ + ++A  T  +M+ +  CKP V +Y+ L+ +  + + +D  E    
Sbjct: 81  DVALTVIKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSR 140

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
               + +  +  TYN +I    K ++ E+  S    M  S    PD+F+  ++I+     
Sbjct: 141 YFESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMW-SQNLKPDVFSYGTLINGMVKV 199

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVT 208
           G++    K ++E ++ GV AD+   N+L   + + G YDK + + + + K    +P VVT
Sbjct: 200 GDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVT 259

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YNI+I    K G  ++  E +++M     + +  TY SL+    +AG I     + +++ 
Sbjct: 260 YNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIV 319

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
            S +++D    N +++ + +AG +++  EL++ M + +C
Sbjct: 320 ESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENC 358



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 129/319 (40%), Gaps = 20/319 (6%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  ++E++   G +P    Y  L+    ++G L++A     + +     K D Y YS 
Sbjct: 378 EEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPG-KLDAYAYSS 436

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           ++    K  R D    I+ +M   G +      N +I+G+ +A K E+  + F  M E  
Sbjct: 437 MVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREM-ECK 495

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           GC P I + N++I     +    +   +  E      K D+ T ++L     +     K+
Sbjct: 496 GCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQE---KKI 552

Query: 191 RSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
              ++  Q+     F P +  YNI++        +E   + +  MK     PN +T  +L
Sbjct: 553 EMALNLWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTL 612

Query: 248 ------VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
                 V  Y KA  I   D IL+   + D+I     +N  I        +    E    
Sbjct: 613 MEGLYKVRDYEKASEIW--DCILKDGLHPDII----SYNITIKGLCSCSRISDAIEFLND 666

Query: 302 MKERHCVPDNITFATMIQA 320
              R  +P  +T+  +++A
Sbjct: 667 ALNRGILPTAVTWNILVRA 685



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 1/227 (0%)

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
           T+I  Y K K   +   +F  M +  GC P + + N++++A+      ++ E +   F  
Sbjct: 85  TVIKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFES 144

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
           M V  ++QT NIL K   +    +K  S++D+M  +   P V +Y  +I    K G +  
Sbjct: 145 MDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLG 204

Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL-RQVENSDVILDTPFFNCII 283
             + F +M  RG+  +   Y  L+  + K G   K   I  R V++  V  +   +N +I
Sbjct: 205 ALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMI 264

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +   + G  ++  E++  M +     D  T++++I      G  + A
Sbjct: 265 NGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGA 311



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 123/289 (42%), Gaps = 3/289 (1%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           + A+++ + ++G + E+F     M    +C+  V +Y+ILIK   +  + +    I   +
Sbjct: 330 HNAMLNGFCRAGKIKESFELWMVMGK-ENCQT-VVSYNILIKGLFENGKVEEAISIWELL 387

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
              G    + TY  +I G  K  +  +    F    E G    D +  +SM+      G 
Sbjct: 388 CKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKE-AEDGPGKLDAYAYSSMVDGLCKEGR 446

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +++     N+ +  G K D    N L   + RA   +   +    M+ +   PT+V+YN 
Sbjct: 447 MDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNT 506

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           +I+   KA    +   + K+M  +  KP+ IT   L+    +   I    ++ +Q  +  
Sbjct: 507 LIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKG 566

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
              D   +N ++        +E   +L+  MK   CVP+ +T  T+++ 
Sbjct: 567 FKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEG 615



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 106/248 (42%), Gaps = 4/248 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   ++A  +   M   G K    V   L++ + ++  L++A +   +M+    C 
Sbjct: 440 GLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREME-CKGCS 498

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P + +Y+ LIK   K  RF      + EM     +   +T + ++DG  + KK E M  +
Sbjct: 499 PTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIE-MALN 557

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
                   G  PDI   N ++    +   +E   + Y+         ++ T N L +   
Sbjct: 558 LWQQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLY 617

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +   Y+K   + D + K    P +++YNI I+       I    E+     +RG+ P ++
Sbjct: 618 KVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGILPTAV 677

Query: 243 TYCSLVSA 250
           T+  LV A
Sbjct: 678 TWNILVRA 685


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 150/336 (44%), Gaps = 11/336 (3%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +   M+ +G+ P    Y +++  Y  SG   EA  T+  M+S    +P+V TYS 
Sbjct: 226 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS-DGVEPNVVTYSS 284

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+    K  R     KI   M+  G+E    TY T++ G+ K  +  E E  F  MV  G
Sbjct: 285 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIG 344

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PDI T N++I     +G +++  K       +GVK DI T   L   Y R    D  
Sbjct: 345 -VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDA 403

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            ++   M      P ++TYNI+++           +E +  +   G +    TY  ++  
Sbjct: 404 LALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG 463

Query: 251 YSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
             K  L    D  LR  +N   +D+ L+T  FN +I A  + G +++  +LF        
Sbjct: 464 LCKNNL---TDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGL 520

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
           VPD  T++ M +     G  E    L++  ++M+EN
Sbjct: 521 VPDVRTYSLMAENLIEQGSLE---ELDDLFLSMEEN 553



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 141/307 (45%), Gaps = 4/307 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           M  L K  +  +A  +F+ M   GL+P +  Y  L+  + + G + E+    + M  +  
Sbjct: 286 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIG- 344

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
            KPD+ TY+ LI  C    + D   K+LA M  +G++   VTY T+I+GY +  + ++  
Sbjct: 345 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 404

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           + F  MV SG   P+I T N ++    ++      ++ Y      G + ++ T NI+   
Sbjct: 405 ALFKEMVSSG-VSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG 463

Query: 181 YGRAGMYDK-MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
             +  + D+ +R   +         T  T+NI+I    K G +++ ++ F      G+ P
Sbjct: 464 LCKNNLTDEALRMFQNLCLTDLQLETR-TFNIMIGALLKCGRMDEAKDLFAAHSANGLVP 522

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  TY  +     + G + ++D +   +E +    D+   N I+    Q GD+ + G   
Sbjct: 523 DVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYL 582

Query: 300 LTMKERH 306
             + E+H
Sbjct: 583 FMIDEKH 589



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 154/346 (44%), Gaps = 15/346 (4%)

Query: 2   VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++G C +  +  L F  +   +  G +     +T L+          +A   +    + 
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156

Query: 59  SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGK--- 112
             C PDV++Y+ L+K  C +    + +E   ++A+    G     V+YNT+++G+ K   
Sbjct: 157 LGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGI 216

Query: 113 -----AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 167
                A+  ++     + MV++G   PD  T NS++  Y +SG  ++      +    GV
Sbjct: 217 QTKLTAQAMDKAMEVLNTMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGV 275

Query: 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
           + ++ T + L     + G   + R + D M KR   P + TY  +++   K G + + E+
Sbjct: 276 EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEK 335

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
            F  M   G+KP+ ITY +L+     AG + +   +L  + +  V  D   +  +I+ Y 
Sbjct: 336 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYC 395

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           +   ++    LF  M      P+ IT+  ++Q       T AA+ L
Sbjct: 396 RVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 441



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 148/348 (42%), Gaps = 24/348 (6%)

Query: 11  EQASLLFEVMLSDGLKPSV-DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK--PDVYT 67
           E A  +F+ +L  G   S+  +  AL      S     A S  N M      K  P V+T
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHSPA--AAVSRYNRMARAGAGKVTPTVHT 94

Query: 68  YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAM 126
           Y+ILI  C +  R DL    L  +   G    A+T+  ++ G    K+  + M+     M
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRM 154

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GVKADIQTLNILTKS 180
            E G C PD+F+ N+++    +     + ++     ++M      G   D+ + N +   
Sbjct: 155 TELG-CIPDVFSYNNLLKGLCDE---NRSQEALELLHMMADDRGGGSPPDVVSYNTVLNG 210

Query: 181 YGRAGMY--------DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           + + G+         DK   V++ M K    P  +TYN ++  +  +G  ++     KKM
Sbjct: 211 FFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 270

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           +  G++PN +TY SL++   K G   +   I   +    +  D   +  ++  + + G V
Sbjct: 271 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRV 330

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            +  +LF  M      PD IT+ T+I      G  + A  L   M+++
Sbjct: 331 IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSV 378


>gi|27545040|gb|AAO18446.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|108711829|gb|ABF99624.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 863

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +Q+ +L   ML  G+ P    Y  +V A+  +G L        +M S +   PD   Y  
Sbjct: 263 DQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEM-SATGHTPDPSAYLG 321

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++ T          +L +M   G   +A TY  ++D YG+  +F+ +   F  M  + 
Sbjct: 322 LMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT- 380

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T N +   +G+ G  +++ + + +     V+ DI T   +  + GR G+++  
Sbjct: 381 -VPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDA 439

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R V+D++      PT   Y  ++E  G A   E+    F  M   G  P   TY +L +A
Sbjct: 440 REVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANA 499

Query: 251 YSKAGLIMKVDSIL-RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           ++K GL  + ++I  R   N+ +  D   F+ +I AY Q   ++   + ++ M++    P
Sbjct: 500 FAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNP 559

Query: 310 DNITFATMIQAYNALGMTEAAQ 331
           D  +   ++ AY   G+ + ++
Sbjct: 560 DERSLEGVLNAYCIAGVIDESK 581



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 129/302 (42%), Gaps = 11/302 (3%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           + A+   + + G    +      M+  S C+PD + ++I+I    +     L++K L   
Sbjct: 101 FAAVYREFSRRGDWQRSLRLFKYMQRQSWCRPDEHIHAIVIGVLGR-QGPALLDKCLEVF 159

Query: 92  SYLGIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
             L  E  +A++Y ++I  Y +    EE       M ++ G  P   T N++++A   + 
Sbjct: 160 HDLPSESRTALSYTSLIAAYARNALHEEARELLDQM-KASGVAPTAATYNTVLAACARAT 218

Query: 151 NIE-KMEKWYNEFNLM------GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           +     +     F  M       V+ D+ T N L  +     + D+   ++  M +    
Sbjct: 219 DPPVPFDMLLGLFAEMRHDPSPSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVL 278

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P   +Y  +++ F  AG++ ++ E F +M   G  P+   Y  L+ A++  G   +  ++
Sbjct: 279 PDTASYRHIVDAFAGAGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAV 338

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
           LRQ++          +  ++  YG+ G  + + ELF  M+     PD  T+  + + +  
Sbjct: 339 LRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVFGD 397

Query: 324 LG 325
            G
Sbjct: 398 GG 399



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 122/286 (42%), Gaps = 9/286 (3%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ ML   ++P +D    ++ A G+ GL ++A   + D  +     P    Y+ L+++ 
Sbjct: 407 LFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVL-DYITTEGMVPTAKAYTGLVEAL 465

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                ++        M+ +G   +  TYN + + + K   F+E E+ FS M  +     D
Sbjct: 466 GHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKD 525

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             + +++I AY     ++   K Y E        D ++L  +  +Y  AG+ D+ +   +
Sbjct: 526 KDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFE 585

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-HRGMKPNSITYCSLVSAYSKA 254
            +Q     P+++ Y +++  + +        +  ++MK +R    + +    +   Y   
Sbjct: 586 ELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIKGEYDDD 645

Query: 255 GLIMKVDSIL--RQVENSDVILDTPFFNCIISA---YGQAGDVEKM 295
                V+ +L    +E  D  L   FFN ++     +GQ G   ++
Sbjct: 646 SNWQMVEYVLDNSNLEGCDYSLR--FFNALLDVLWWFGQKGRAARV 689



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-TLNILTKSY 181
           F  M     C PD      +I   G  G    ++K    F+ +  ++    +   L  +Y
Sbjct: 121 FKYMQRQSWCRPDEHIHAIVIGVLGRQGPA-LLDKCLEVFHDLPSESRTALSYTSLIAAY 179

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----IEKMEEYFKKMKH--- 234
            R  ++++ R ++D M+     PT  TYN V+    +A       + +   F +M+H   
Sbjct: 180 ARNALHEEARELLDQMKASGVAPTAATYNTVLAACARATDPPVPFDMLLGLFAEMRHDPS 239

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
             ++P+  TY +L++A +   L  + + +LR +  + V+ DT  +  I+ A+  AG++ +
Sbjct: 240 PSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSR 299

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           + ELF  M      PD   +  +++A+  +G T  A  +  +M A
Sbjct: 300 VAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQA 344



 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 7/162 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG     E+A + F +M   G  P+++ Y AL +A+ + GL  EA +  + M + +  + 
Sbjct: 465 LGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQK 524

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  ++  LI++  +  + D   K   EM          +   +++ Y  A   +E +  F
Sbjct: 525 DKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQF 584

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
             + +S    P I     M+S Y       + ++W + ++L+
Sbjct: 585 EEL-QSMVTVPSIIAYCMMLSLYA------RNDRWTDAYDLL 619


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 154/365 (42%), Gaps = 41/365 (11%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E A  LF  M + G +P+V  YTAL+S    SGLL  A    + M S     P+  TY+ 
Sbjct: 507 EDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM-SRDGVFPNTVTYNA 565

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKF-----EEMESS 122
           LI    +  R      +L  M   G+  + VTYN +I GY   G  KK        ++  
Sbjct: 566 LINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 625

Query: 123 FSA--------------------------MVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
            SA                          ++  GGC PD ++   +I  +     I KME
Sbjct: 626 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK---ISKME 682

Query: 157 KWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
             +  FN M   G+  +  T   L   Y +    D   S+++ M++    P V TYN++I
Sbjct: 683 SAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLI 742

Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
               K  +    EE  K M   G+ PN +TY +++    K G       +  ++     +
Sbjct: 743 HGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL 802

Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
            +   ++ +I A GQ G VE+   LF  ++    +PD IT+  MI+AY   G  E A N 
Sbjct: 803 PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNF 862

Query: 334 ENKMI 338
             +MI
Sbjct: 863 LGRMI 867



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 147/325 (45%), Gaps = 22/325 (6%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  + E A  LF  M+ DGL P+   YTAL+  Y +   LD A S +  MK  S
Sbjct: 671 LICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKR-S 729

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
            C+P+V TY++LI   TK + F   E++   M   GI  + VTY  +IDG  K       
Sbjct: 730 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 789

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F+ M+E  GC P++ T +S+I A G  G +E+ E  + E    G+  D  T   + +
Sbjct: 790 LEMFNKMIEQ-GCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIE 848

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +Y  +G  +   + +  M K    PT+ TY ++I+            EY    +     P
Sbjct: 849 AYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN--------EYLLADQRLAALP 900

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           + +  CS     +    +  + + L ++   D  L     N ++S    AG   +  EL 
Sbjct: 901 DVVPNCSFGYQTTDQDAVSVMSAKLAEL---DPGLSVQVQNALVSNLSTAGRWFEANELL 957

Query: 300 LTMKERHCVPDNITFATMIQAYNAL 324
            +M  +   PD        +AYN+L
Sbjct: 958 GSMISQGLCPDQ-------EAYNSL 975



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 151/373 (40%), Gaps = 37/373 (9%)

Query: 2   VMLGKCKQPEQASLL--FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTIN------ 53
           ++LG C++ +  S L  F  M  +G +P+   Y+ L++    SG ++EAF  I       
Sbjct: 426 MILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHG 485

Query: 54  ----------------DMKSVSD------------CKPDVYTYSILIKSCTKFHRFDLIE 85
                           DM    D            C+P+VYTY+ LI          +  
Sbjct: 486 ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAI 545

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +   MS  G+  + VTYN +I+   + ++ +      + M  +G    +I T N MI  
Sbjct: 546 GLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNG-LFTNIVTYNEMIKG 604

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           Y   G+ +K     N     G  A++ T N + K Y  +G       ++D M+     P 
Sbjct: 605 YCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPD 664

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
             +Y  +I  F K   +E     F +M   G+ PN +TY +L+  Y K   +    S+L 
Sbjct: 665 EWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLE 724

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            ++ S    +   +N +I    +  +     EL   M E    P+ +T+  MI      G
Sbjct: 725 HMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 784

Query: 326 MTEAAQNLENKMI 338
            T  A  + NKMI
Sbjct: 785 STSLALEMFNKMI 797



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 125/311 (40%), Gaps = 37/311 (11%)

Query: 10  PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS 69
           P++A L+   ML  G   ++  Y  ++  Y  SG    A   ++ M+    CKPD ++Y+
Sbjct: 611 PKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRD-GGCKPDEWSYT 669

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
            LI                         C          G+ K  K E     F+ MV+ 
Sbjct: 670 ELI-------------------------C----------GFCKISKMESAFGLFNEMVDD 694

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
           G C P+  T  ++I  Y     ++            G + ++QT N+L     +   +  
Sbjct: 695 GLC-PNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSG 753

Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
              +   M +   FP VVTY  +I+   K G      E F KM  +G  PN +TY SL+ 
Sbjct: 754 AEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIR 813

Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           A  + G + + +++  ++E   +I D   +  +I AY  +G VE        M +  C P
Sbjct: 814 ALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQP 873

Query: 310 DNITFATMIQA 320
              T+  +I+ 
Sbjct: 874 TLWTYGVLIKG 884



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 152/330 (46%), Gaps = 18/330 (5%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV--SDCKPDVYTYSILIKS 74
           +  MLS+G++P++ +Y A+++A  + G + +A  TI  MK V  S+  PD +TY+ +I  
Sbjct: 373 YHRMLSEGVQPNLLIYNAVINALCKDGNVADA-ETI--MKKVFESEMSPDTFTYTSMILG 429

Query: 75  CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
             + H  D   ++  +M+  G E + VTY+T+I+G   + +  E       M+   G  P
Sbjct: 430 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILH-GILP 488

Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
              T    I A  + G  E   + + +    G + ++ T   L      +G+      + 
Sbjct: 489 TAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLF 548

Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY--- 251
             M +   FP  VTYN +I    +   I+        M   G+  N +TY  ++  Y   
Sbjct: 549 HRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCIL 608

Query: 252 ---SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
               KA L+M  +++L++  +++++     +N II  Y  +G+      +   M++  C 
Sbjct: 609 GDPKKAMLVM--NNMLQRGHSANLVT----YNTIIKGYCDSGNTTSALRILDLMRDGGCK 662

Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMI 338
           PD  ++  +I  +  +   E+A  L N+M+
Sbjct: 663 PDEWSYTELICGFCKISKMESAFGLFNEMV 692



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 121/297 (40%), Gaps = 2/297 (0%)

Query: 25  LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84
           + P    YT+++  + +   LD A    N M     C+P+  TYS LI       R +  
Sbjct: 416 MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAK-EGCEPNTVTYSTLINGLCDSGRVNEA 474

Query: 85  EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
             ++ EM   GI  +A T    I        +E+    F  M ++ GC P+++T  ++IS
Sbjct: 475 FDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDM-KNKGCEPNVYTYTALIS 533

Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
               SG ++     ++  +  GV  +  T N L               V++ M +   F 
Sbjct: 534 GLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFT 593

Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
            +VTYN +I+ +   G  +K       M  RG   N +TY +++  Y  +G       IL
Sbjct: 594 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL 653

Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
             + +     D   +  +I  + +   +E    LF  M +    P+ +T+  +I  Y
Sbjct: 654 DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGY 710



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 125/290 (43%), Gaps = 11/290 (3%)

Query: 54  DMKSVSDCKPDVYTYSILIKSCTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDG 109
           DM S S  +  ++ YS L+   ++        D   ++L+E    G++ + + YN +I+ 
Sbjct: 339 DMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE----GVQPNLLIYNAVINA 394

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
             K     + E+    + ES    PD FT  SMI  +    +++   + +N+    G + 
Sbjct: 395 LCKDGNVADAETIMKKVFESE-MSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEP 453

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
           +  T + L      +G  ++   ++  M      PT  T    I      G  E     F
Sbjct: 454 NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLF 513

Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
             MK++G +PN  TY +L+S    +GL+     +  ++    V  +T  +N +I+   + 
Sbjct: 514 VDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVEN 573

Query: 290 GDVEKMGELFLTMKERHCVPDNI-TFATMIQAYNALGMTEAAQNLENKMI 338
             + K   + L +  R+ +  NI T+  MI+ Y  LG  + A  + N M+
Sbjct: 574 RRI-KYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNML 622



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 82/165 (49%), Gaps = 1/165 (0%)

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
           ++++   + +  M   M S +D + +      +  Y+ ++    + G    + + + +M 
Sbjct: 319 IHLIKSCHSKEAMARTM-SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 377

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
             G++PN + Y ++++A  K G +   ++I+++V  S++  DT  +  +I  + +  D++
Sbjct: 378 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 437

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
              ++F  M +  C P+ +T++T+I      G    A +L  +MI
Sbjct: 438 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 482



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 90/216 (41%)

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
           SF  M+   G    +F  ++++      G    +   Y+     GV+ ++   N +  + 
Sbjct: 336 SFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINAL 395

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            + G      ++M  + +    P   TY  +I    +   ++   + F +M   G +PN+
Sbjct: 396 CKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNT 455

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L++    +G + +   ++R++    ++         I A    G  E    LF+ 
Sbjct: 456 VTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVD 515

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           MK + C P+  T+  +I      G+ + A  L ++M
Sbjct: 516 MKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM 551



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 110/274 (40%), Gaps = 26/274 (9%)

Query: 4    LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
            LG+  + E+A  LF  +   GL P    Y  ++ AY  SG ++ AF+ +  M   + C+P
Sbjct: 815  LGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK-AGCQP 873

Query: 64   DVYTYSILIK---------------------SCTKFHRF---DLIEKILAEMSYLGIECS 99
             ++TY +LIK                     +C+  ++    D +  + A+++ L    S
Sbjct: 874  TLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLS 933

Query: 100  AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
                N ++     A ++ E      +M+  G C PD    NS++ +     N++     +
Sbjct: 934  VQVQNALVSNLSTAGRWFEANELLGSMISQGLC-PDQEAYNSLLCSLLRVRNVDLAMGVF 992

Query: 160  NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
               +  G +  +     L  +  +     + R   + M  R + P  V   ++I+   + 
Sbjct: 993  KHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRD 1052

Query: 220  GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
            G+ +   E+   M+ R   P+   Y  L    SK
Sbjct: 1053 GYKDLCMEFLHIMETRRYMPSFHIYTILAREASK 1086


>gi|87162841|gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1053

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 157/324 (48%), Gaps = 13/324 (4%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +PE +   F+  +  G +P++  YTA+V+A  + G +DE    +  M+       DV  Y
Sbjct: 163 KPELSLWFFDNFM--GSRPNLVTYTAVVNALCKLGRVDEVCGLVRKMEE-DGLDLDVVLY 219

Query: 69  SILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           S+ +  C       L+E  + + EM   GI    V+Y  +IDG+ K    E+  +  + M
Sbjct: 220 SVWV--CGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKM 277

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           ++ G   P+  T  +++SAY   G IE+    +     MG++ D     +L   +GR G 
Sbjct: 278 IKEG-IIPNKVTYTAIMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGD 336

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           +D++  ++  M+KR   P VVTYN V+    K G  ++ +E+ K      +  + +TY +
Sbjct: 337 FDRVFQLLVEMEKRGIGPNVVTYNAVVNGLSKYGRTQEADEFSK-----NVTADVVTYST 391

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+  Y++   ++ +    +++E + + +D    N +I A       E +  L+  M E  
Sbjct: 392 LLHGYTEEDNVLGILQTKKRLEEAGISMDVVMCNVLIRALFMMQAYEDVYALYKGMPEMD 451

Query: 307 CVPDNITFATMIQAYNALGMTEAA 330
            VP++IT+ TMI  Y  +G    A
Sbjct: 452 LVPNSITYCTMIDGYCKVGKINEA 475



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 129/269 (47%), Gaps = 14/269 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E++      M+ +G+ P+   YTA++SAY + G ++EAF     MK +   + D + + +
Sbjct: 268 EKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEEAFGLFVRMKDMG-IELDEFVFVV 326

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG---YGKAKKFEEMESSFSAMV 127
           LI    +   FD + ++L EM   GI  + VTYN +++G   YG+ ++ +E   + +A  
Sbjct: 327 LIDGFGRVGDFDRVFQLLVEMEKRGIGPNVVTYNAVVNGLSKYGRTQEADEFSKNVTA-- 384

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
                  D+ T ++++  Y    N+  + +        G+  D+   N+L ++      Y
Sbjct: 385 -------DVVTYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVMCNVLIRALFMMQAY 437

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           + + ++   M +    P  +TY  +I+ + K G I +  E F   +   +   +  Y S+
Sbjct: 438 EDVYALYKGMPEMDLVPNSITYCTMIDGYCKVGKINEALEVFDDFRKTSISSYA-CYNSI 496

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDT 276
           ++   K G++      L ++++  ++LDT
Sbjct: 497 INGLCKKGMVEMAIEALLELDHKGLMLDT 525



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 103/209 (49%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P++ T  ++++A    G ++++     +    G+  D+   ++    Y    +  ++
Sbjct: 176 GSRPNLVTYTAVVNALCKLGRVDEVCGLVRKMEEDGLDLDVVLYSVWVCGYVEEKVLVEV 235

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              M  M ++      V+Y I+I+ F K G +EK   +  KM   G+ PN +TY +++SA
Sbjct: 236 FRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSA 295

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K G I +   +  ++++  + LD   F  +I  +G+ GD +++ +L + M++R   P+
Sbjct: 296 YCKKGRIEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPN 355

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
            +T+  ++   +  G T+ A      + A
Sbjct: 356 VVTYNAVVNGLSKYGRTQEADEFSKNVTA 384



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 79/176 (44%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           GV  +I   N +       G   +   + D ++K     + +TY  +I    + G+++  
Sbjct: 727 GVNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDA 786

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           E  FKKM   G +P +  Y SL+ A SK G + K   +L  +E   +  D    + +I+ 
Sbjct: 787 EHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVINC 846

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           Y Q GD+E   E +   K +   PD + F  MI+     G  E  +++  +M+  K
Sbjct: 847 YCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIRGLCTKGRMEETRSVLREMLQSK 902



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 4/171 (2%)

Query: 164 LMGVKADIQTL----NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           LMGV+ D+  +     ++     + G  +K   +   ++K+     +V YN +I      
Sbjct: 686 LMGVQDDLPVMYVDYGVVIHGLCKGGYLNKALDLCTLIEKKGVNLNIVIYNSIINGLCHD 745

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G + +    F  ++   +  + ITY +L+ A  + G +   + + +++  +     T  +
Sbjct: 746 GCLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDAEHVFKKMVLNGFQPKTQVY 805

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           N ++ A  + G +EK  EL   M++++   DN T +++I  Y   G  E A
Sbjct: 806 NSLLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGA 856



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 1/176 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G+  + V YN+II+G        E    F ++ +      +I T  ++I A    G ++ 
Sbjct: 727 GVNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEI-TYATLIYALCREGYLQD 785

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
            E  + +  L G +   Q  N L  +  + G  +K   +++ M+K++      T + VI 
Sbjct: 786 AEHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVIN 845

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            + + G +E   E++ K K + + P+ + +  ++      G + +  S+LR++  S
Sbjct: 846 CYCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIRGLCTKGRMEETRSVLREMLQS 901



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 75/177 (42%), Gaps = 7/177 (3%)

Query: 162 FNLMGVKADIQTLNILTKSYGRA-GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           +N   V   +  L +L K  GRA   Y  +  V D +   +     V Y +VI    K G
Sbjct: 658 YNSSAVTFPVSILKVLIKE-GRALDAYKLLMGVQDDLPVMY-----VDYGVVIHGLCKGG 711

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
           ++ K  +    ++ +G+  N + Y S+++     G +++   +   +E  +++     + 
Sbjct: 712 YLNKALDLCTLIEKKGVNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEITYA 771

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +I A  + G ++    +F  M      P    + +++ A + +G  E A  L N M
Sbjct: 772 TLIYALCREGYLQDAEHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDM 828


>gi|115456295|ref|NP_001051748.1| Os03g0824100 [Oryza sativa Japonica Group]
 gi|113550219|dbj|BAF13662.1| Os03g0824100, partial [Oryza sativa Japonica Group]
          Length = 691

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 147/322 (45%), Gaps = 4/322 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           +Q+ +L   ML  G+ P    Y  +V A+  +G L        +M S +   PD   Y  
Sbjct: 91  DQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSRVAELFAEM-SATGHTPDPSAYLG 149

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+++ T          +L +M   G   +A TY  ++D YG+  +F+ +   F  M  + 
Sbjct: 150 LMEAHTLVGATAEAVAVLRQMQADGCPPTAATYRVLLDLYGRQGRFDGVRELFREMRTT- 208

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              PD  T N +   +G+ G  +++ + + +     V+ DI T   +  + GR G+++  
Sbjct: 209 -VPPDTATYNVLFRVFGDGGFFKEVVELFQDMLHSEVEPDIDTCENVMVACGRGGLHEDA 267

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
           R V+D++      PT   Y  ++E  G A   E+    F  M   G  P   TY +L +A
Sbjct: 268 REVLDYITTEGMVPTAKAYTGLVEALGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANA 327

Query: 251 YSKAGLIMKVDSIL-RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
           ++K GL  + ++I  R   N+ +  D   F+ +I AY Q   ++   + ++ M++    P
Sbjct: 328 FAKGGLFQEAEAIFSRMTNNAAIQKDKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNP 387

Query: 310 DNITFATMIQAYNALGMTEAAQ 331
           D  +   ++ AY   G+ + ++
Sbjct: 388 DERSLEGVLNAYCIAGVIDESK 409



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 122/286 (42%), Gaps = 9/286 (3%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ ML   ++P +D    ++ A G+ GL ++A   + D  +     P    Y+ L+++ 
Sbjct: 235 LFQDMLHSEVEPDIDTCENVMVACGRGGLHEDAREVL-DYITTEGMVPTAKAYTGLVEAL 293

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
                ++        M+ +G   +  TYN + + + K   F+E E+ FS M  +     D
Sbjct: 294 GHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQKD 353

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             + +++I AY     ++   K Y E        D ++L  +  +Y  AG+ D+ +   +
Sbjct: 354 KDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQFE 413

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-HRGMKPNSITYCSLVSAYSKA 254
            +Q     P+++ Y +++  + +        +  ++MK +R    + +    +   Y   
Sbjct: 414 ELQSMVTVPSIIAYCMMLSLYARNDRWTDAYDLLEEMKTNRASSTHQVIASMIKGEYDDD 473

Query: 255 GLIMKVDSIL--RQVENSDVILDTPFFNCIISA---YGQAGDVEKM 295
                V+ +L    +E  D  L   FFN ++     +GQ G   ++
Sbjct: 474 SNWQMVEYVLDNSNLEGCDYSLR--FFNALLDVLWWFGQKGRAARV 517



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 10/227 (4%)

Query: 99  SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
           +A++Y ++I  Y +    EE       M  SG    D      M+      G   +M   
Sbjct: 11  TALSYTSLIAAYARNALHEEARELLDQMKASGVAPTDPPVPFDMLL-----GLFAEMRHD 65

Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
            +      V+ D+ T N L  +     + D+   ++  M +    P   +Y  +++ F  
Sbjct: 66  PSP----SVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAG 121

Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
           AG++ ++ E F +M   G  P+   Y  L+ A++  G   +  ++LRQ++          
Sbjct: 122 AGNLSRVAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQADGCPPTAAT 181

Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           +  ++  YG+ G  + + ELF  M+     PD  T+  + + +   G
Sbjct: 182 YRVLLDLYGRQGRFDGVRELFREMRTT-VPPDTATYNVLFRVFGDGG 227



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPT--VVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
           L  +Y R  ++++ R ++D M+     PT   V +++++  F +  H             
Sbjct: 18  LIAAYARNALHEEARELLDQMKASGVAPTDPPVPFDMLLGLFAEMRHDPS---------- 67

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
             ++P+  TY +L++A +   L  + + +LR +  + V+ DT  +  I+ A+  AG++ +
Sbjct: 68  PSVRPDLTTYNTLLAAAAVRALSDQSEMLLRTMLEAGVLPDTASYRHIVDAFAGAGNLSR 127

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           + ELF  M      PD   +  +++A+  +G T  A  +  +M A
Sbjct: 128 VAELFAEMSATGHTPDPSAYLGLMEAHTLVGATAEAVAVLRQMQA 172



 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 7/162 (4%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG     E+A + F +M   G  P+++ Y AL +A+ + GL  EA +  + M + +  + 
Sbjct: 293 LGHAAMYEEAYVAFNMMTEIGSLPTIETYNALANAFAKGGLFQEAEAIFSRMTNNAAIQK 352

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  ++  LI++  +  + D   K   EM          +   +++ Y  A   +E +  F
Sbjct: 353 DKDSFDALIEAYCQGAQLDDAVKAYMEMRKSRFNPDERSLEGVLNAYCIAGVIDESKEQF 412

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165
             + +S    P I     M+S Y       + ++W + ++L+
Sbjct: 413 EEL-QSMVTVPSIIAYCMMLSLYA------RNDRWTDAYDLL 447


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 157/338 (46%), Gaps = 4/338 (1%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +++ G  K   +A  +FE M  +G +P +   T L+++  +  L D  +     M  +  
Sbjct: 143 VIVYGNSKMTHEAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLG- 201

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
              +++ Y++L+ +C K    +  EK+L+EM    +     TYNT+I  Y K     E  
Sbjct: 202 VVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEAL 261

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
           S    M E  G  PDIFT NS+I  +   G + +  + + +     V  +  T   L   
Sbjct: 262 SVQDRM-EMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIK--DVTPNHVTYTSLIDG 318

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           Y R    D+   + + M ++  +PTV+TYN ++    + G +        +M  R ++P+
Sbjct: 319 YCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPD 378

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           ++T  +L++AY K G +     +  ++  + + LD   +  +I  + +A +++K  EL  
Sbjct: 379 NVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLF 438

Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
            M +    P   T++ ++ +Y      EA   L ++++
Sbjct: 439 GMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELV 476



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 134/315 (42%), Gaps = 12/315 (3%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P +  Y  L+S Y + G+  EA S + D   ++   PD++TY+ LI    +  R     +
Sbjct: 239 PDLFTYNTLISLYCKKGMHYEALS-VQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQ 297

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +  ++    +  + VTY ++IDGY +    +E       M E G  +P + T NS++   
Sbjct: 298 LFRDIK--DVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKG-LYPTVITYNSILRKL 354

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G +       NE +   ++ D  T N L  +Y + G       V D M         
Sbjct: 355 CEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQ 414

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA----GLIMKVDS 262
            TY  +I  F KA  I+K +E    M   G  P+  TY  LV +Y K      +I   D 
Sbjct: 415 FTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDE 474

Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
           ++R+     + +D   +  +I  + +   ++    +   MK++    D++ + ++   Y 
Sbjct: 475 LVRR----GLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYW 530

Query: 323 ALGMTEAAQNLENKM 337
            +G      ++ ++M
Sbjct: 531 KVGKVNVTSDILDEM 545



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 128/282 (45%), Gaps = 4/282 (1%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           G+ P +  Y +L+  + + G + EA     D+K V+   P+  TY+ LI    + +  D 
Sbjct: 271 GISPDIFTYNSLIYGFCREGRMREAVQLFRDIKDVT---PNHVTYTSLIDGYCRVNDLDE 327

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
             ++   MS  G+  + +TYN+I+    +  +  +     + M E     PD  T N++I
Sbjct: 328 ALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERK-IEPDNVTCNTLI 386

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
           +AY   G++    K  ++    G+K D  T   L   + +A   DK + ++  M    F 
Sbjct: 387 NAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFS 446

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P+  TY+ +++++ K  + E + +   ++  RG+  +   Y +L+  + K   I     +
Sbjct: 447 PSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRV 506

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           L  +++  +  D+  +  +   Y + G V    ++   M ++
Sbjct: 507 LGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKK 548



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 116/277 (41%), Gaps = 44/277 (15%)

Query: 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA 169
           YG +K   E    F  M    G  P +     ++++       + + K Y +   +GV A
Sbjct: 146 YGNSKMTHEAIQVFEHM-RVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVA 204

Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEY 228
           +I   N+L  +  ++G  +K   V+  M+ +  FP + TYN +I  + K G H E +   
Sbjct: 205 NIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQ 264

Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
             +M+  G+ P+  TY SL+  + + G + +   + R ++  DV  +   +  +I  Y +
Sbjct: 265 -DRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFRDIK--DVTPNHVTYTSLIDGYCR 321

Query: 289 AGDV-------EKMGE----------------------------LFLTMKERHCVPDNIT 313
             D+       E M E                            L   M ER   PDN+T
Sbjct: 322 VNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVT 381

Query: 314 FATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQ 350
             T+I AY  +G   +A  +++KM+     +G KL Q
Sbjct: 382 CNTLINAYCKIGDMRSALKVKDKMVG----AGLKLDQ 414



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 114 KKFEEMESSFSAMVESGGCHPDI--FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
           K F   +S  S++V+     PD+    L+ ++  YGNS    +  + +    + G +  +
Sbjct: 113 KDFLSTQSVLSSLVKIHD-DPDVNSHVLSWLVIVYGNSKMTHEAIQVFEHMRVNGFRPHL 171

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
               +L  S  +  + D +  +   M K      +  YN+++    K+G +EK E+   +
Sbjct: 172 HACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSE 231

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M+ + + P+  TY +L+S Y K G+  +  S+  ++E + +  D   +N +I  + + G 
Sbjct: 232 MELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGR 291

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           + +  +LF  +K+    P+++T+ ++I  Y  +   + A  L+  M
Sbjct: 292 MREAVQLFRDIKD--VTPNHVTYTSLIDGYCRVNDLDEALRLKEVM 335



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 113/258 (43%), Gaps = 4/258 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C+    ++A  L EVM   GL P+V  Y +++    + G L +A   +N+M S    +
Sbjct: 318 GYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEM-SERKIE 376

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD  T + LI +  K        K+  +M   G++    TY  +I G+ KAK+ ++ +  
Sbjct: 377 PDNVTCNTLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKEL 436

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+++G   P   T + ++ +Y    N E + K  +E    G+  D+     L + + 
Sbjct: 437 LFGMMDAGFS-PSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFC 495

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +    D  + V+  M+ +  F   V Y  +   + K G +    +   +M  + +     
Sbjct: 496 KIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKKRLMITLK 555

Query: 243 TYCSLVSAYSKAGLIMKV 260
            Y S  ++Y+    I+ +
Sbjct: 556 IYRSFNASYASDNSILSL 573


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 156/324 (48%), Gaps = 2/324 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF  M   G+   V  Y  L+  +   G L EA   +N+M  +    P+VYTY+IL+ + 
Sbjct: 221 LFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEM-VLKTINPNVYTYNILVDAL 279

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  +    + +LA M    ++   +TY+T++DGY    + ++ +  F+AM    G  PD
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAM-SLMGVTPD 338

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           + T   +I+ +  +  +++    + E +   +   I T + L     ++G    +  ++D
Sbjct: 339 VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLID 398

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ R     V+TY+ +I+   K GH+++    F KMK + ++PN  T+  L+    K G
Sbjct: 399 EMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGG 458

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +     + + +      L+   +N +I+ + + G +E+   +   M++  C+P+  TF 
Sbjct: 459 RLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFE 518

Query: 316 TMIQAYNALGMTEAAQNLENKMIA 339
           T+I A       + A+ L  +MIA
Sbjct: 519 TIIIALFKKDENDKAEKLLRQMIA 542



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 151/312 (48%), Gaps = 2/312 (0%)

Query: 26  KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
           KP V +Y  ++ A  +  L+ EA+   ++M +V     DV TY+ LI       +     
Sbjct: 196 KPDVVMYNTIIDAMCKYQLVSEAYGLFSEM-AVKGISADVVTYNTLIYGFCIVGKLKEAI 254

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +L EM    I  +  TYN ++D   K  K +E +S  + M+++    PD+ T ++++  
Sbjct: 255 GLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC-VKPDVITYSTLMDG 313

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
           Y     ++K +  +N  +LMGV  D+ T  IL   + +  M D+  ++   M ++   P 
Sbjct: 314 YFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPG 373

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           +VTY+ +I+   K+G I  + +   +M+ RG   + ITY SL+    K G + +  ++  
Sbjct: 374 IVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFN 433

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           ++++ ++  +   F  ++    + G ++   E+F  +  +    +  T+  MI  +   G
Sbjct: 434 KMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQG 493

Query: 326 MTEAAQNLENKM 337
           + E A  + +KM
Sbjct: 494 LLEEALTMLSKM 505



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 143/303 (47%), Gaps = 5/303 (1%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           ++GK K  E   LL E++L   + P+V  Y  LV A  + G + EA S +  M      K
Sbjct: 246 IVGKLK--EAIGLLNEMVLKT-INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC-VK 301

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PDV TYS L+      +     + +   MS +G+     TY  +I+G+ K K  +E  + 
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNL 361

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M +     P I T +S+I     SG I  +    +E    G  AD+ T + L     
Sbjct: 362 FKEMHQKNMV-PGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLC 420

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D+  ++ + M+ +   P + T+ I+++   K G ++  +E F+ +  +G   N  
Sbjct: 421 KNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVY 480

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  +++ + K GL+ +  ++L ++E++  I +   F  II A  +  + +K  +L   M
Sbjct: 481 TYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQM 540

Query: 303 KER 305
             R
Sbjct: 541 IAR 543



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 106/227 (46%), Gaps = 2/227 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  +F  M   G+ P V  YT L++ + ++ ++DEA +   +M    +  P + TYS 
Sbjct: 321 KKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQ-KNMVPGIVTYSS 379

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI    K  R   +  ++ EM   G     +TY+++IDG  K    +   + F+ M +  
Sbjct: 380 LIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKM-KDQ 438

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P+IFT   ++      G ++  ++ + +    G   ++ T N++   + + G+ ++ 
Sbjct: 439 EIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEA 498

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
            +++  M+     P   T+  +I    K    +K E+  ++M  RG+
Sbjct: 499 LTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 91/205 (44%)

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
           P I   N ++ ++    +        +   L G++ D+ TLNIL   +   G      SV
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
           +  + KR + P  VT N +I+     G ++K   +  K+  +G + N ++Y +L++   K
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCK 176

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
            G        LR+++      D   +N II A  +   V +   LF  M  +    D +T
Sbjct: 177 IGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVT 236

Query: 314 FATMIQAYNALGMTEAAQNLENKMI 338
           + T+I  +  +G  + A  L N+M+
Sbjct: 237 YNTLIYGFCIVGKLKEAIGLLNEMV 261



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 131/299 (43%), Gaps = 8/299 (2%)

Query: 45  LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
           +D+A S  N M  +    P +  ++ ++ S  K   +     +   +   GI+   +T N
Sbjct: 40  VDDAVSQFNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLN 98

Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
            +I+ +    +      S  A +   G  PD  TLN++I      G ++K   ++++   
Sbjct: 99  ILINCFCHMGQIT-FGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLA 157

Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---RFFFPTVVTYNIVIETFGKAGH 221
            G + +  +   L     + G     R+ + F++K   R   P VV YN +I+   K   
Sbjct: 158 QGFQLNQVSYATLINGVCKIG---DTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQL 214

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           + +    F +M  +G+  + +TY +L+  +   G + +   +L ++    +  +   +N 
Sbjct: 215 VSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
           ++ A  + G V++   +   M +    PD IT++T++  Y  +   + AQ++ N M  M
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 333



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 130/324 (40%), Gaps = 8/324 (2%)

Query: 17  FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
           F  ML     P +  +  ++ ++ +      A S  + ++ +   +PD+ T +ILI    
Sbjct: 47  FNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLE-LKGIQPDLITLNILINCFC 105

Query: 77  KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESGGCH 133
              +      +LA++   G     VT NT+I G    G+ KK         A     G  
Sbjct: 106 HMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQ----GFQ 161

Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
            +  +  ++I+     G+     K+  + +    K D+   N +  +  +  +  +   +
Sbjct: 162 LNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGL 221

Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
              M  +     VVTYN +I  F   G +++      +M  + + PN  TY  LV A  K
Sbjct: 222 FSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCK 281

Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
            G + +  S+L  +  + V  D   ++ ++  Y    +V+K   +F  M      PD  T
Sbjct: 282 EGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHT 341

Query: 314 FATMIQAYNALGMTEAAQNLENKM 337
           +  +I  +    M + A NL  +M
Sbjct: 342 YTILINGFCKNKMVDEALNLFKEM 365


>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 706

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 156/352 (44%), Gaps = 34/352 (9%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
           M   G    +  +  L+ A  +   +D+AF    DMK    C+PD YTY+I+I+   +  
Sbjct: 68  MKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKK-KHCEPDEYTYTIMIRMTGRIG 126

Query: 80  RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
           + D    +  EM   G   + + YNT+I     ++  ++    FS M+E   C P+ FT 
Sbjct: 127 KLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKN-CRPNEFTY 185

Query: 140 NSMISAYGNSGNIEKMEK----------------WYNEFNLMGVKADIQTLNILTKSYGR 183
           + +++     G + K++K                     N +G  ++   L     SY  
Sbjct: 186 SVILTLLAAEGQLHKLDKVVELSRKYMNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHD 245

Query: 184 AGMYDKMRSVMDFM----------------QKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227
            G  D   S+++ +                 ++      + YN V    G+   I  + +
Sbjct: 246 RGDRDACLSMLESLCNAGKTVEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYD 305

Query: 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287
            ++KMK  G  P+  TY  L+S++ +AG + +   I  ++ENSD   D   +N +I+  G
Sbjct: 306 LYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLG 365

Query: 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           + GD+++    F  M+E+   PD +T++T+I+ +      E A  L ++M+A
Sbjct: 366 KNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLA 417



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 160/347 (46%), Gaps = 34/347 (9%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M G+  + +++  LFE ML+ G  P++  Y  ++ A   S ++D+     + M    +C+
Sbjct: 121 MTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMME-KNCR 179

Query: 63  PDVYTYSI---LIKSCTKFHRFDLIEKI-------------LAEMSYLG-------IECS 99
           P+ +TYS+   L+ +  + H+ D + ++             +  ++ LG       + C+
Sbjct: 180 PNEFTYSVILTLLAAEGQLHKLDKVVELSRKYMNRSIYAYLVRTLNKLGHASEAHRLFCN 239

Query: 100 AVTYN---------TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
             +Y+         ++++    A K  E       + E G  + D    N++ +A G   
Sbjct: 240 MWSYHDRGDRDACLSMLESLCNAGKTVEAIDLLGKIHEKG-INTDTIMYNTVFTALGRLK 298

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            I  +   Y +  L G   DI T NIL  S+GRAG   +   + + ++     P +++YN
Sbjct: 299 QISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYN 358

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I   GK G +++    F++M+ +G+ P+ +TY +L+  + K   +     +  ++   
Sbjct: 359 SLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAE 418

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
               +   +N ++    ++G   +  +L+  +K++   PD+IT++ +
Sbjct: 419 GCFPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYSVL 465



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 10/261 (3%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K     +A  LF  M S   +   D   +++ +   +G   EA   +  +        
Sbjct: 224 LNKLGHASEAHRLFCNMWSYHDRGDRDACLSMLESLCNAGKTVEAIDLLGKIHE-KGINT 282

Query: 64  DVYTYSILIKSCTKF----HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           D   Y+ +  +  +     H +DL EK    M   G      TYN +I  +G+A K  E 
Sbjct: 283 DTIMYNTVFTALGRLKQISHLYDLYEK----MKLDGPLPDIFTYNILISSFGRAGKVYEA 338

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              F  + E+  C PDI + NS+I+  G +G++++    + E    G+  D+ T + L +
Sbjct: 339 IKIFEEL-ENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIE 397

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
            +G+    +    + D M     FP +VTYNI+++   ++G   +  + + K+K +G+ P
Sbjct: 398 CFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTP 457

Query: 240 NSITYCSLVSAYSKAGLIMKV 260
           +SITY  L    S +   ++V
Sbjct: 458 DSITYSVLERLQSGSHRKLRV 478



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 107/242 (44%), Gaps = 13/242 (5%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G+  +  T N +I  +G     E++E     ++E      + +T   ++ AY  S + + 
Sbjct: 5   GVRGTISTVNILIGFFGDG---EDLERCI-GLIEKWDLKMNGYTYKCLVQAYLRSCDSDN 60

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             + Y E    G   DI   N+L  +  +    D+   V + M+K+   P   TY I+I 
Sbjct: 61  GFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIR 120

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
             G+ G +++    F++M ++G  PN I Y +++ A + + ++ K   +  ++   +   
Sbjct: 121 MTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRP 180

Query: 275 DTPFFNCIIS---AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           +   ++ I++   A GQ   ++K+ EL      R        +A +++  N LG    A 
Sbjct: 181 NEFTYSVILTLLAAEGQLHKLDKVVELSRKYMNRS------IYAYLVRTLNKLGHASEAH 234

Query: 332 NL 333
            L
Sbjct: 235 RL 236



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 3/142 (2%)

Query: 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
           M K     T+ T NI+I  FG     E +E     ++   +K N  TY  LV AY ++  
Sbjct: 1   MDKNGVRGTISTVNILIGFFGDG---EDLERCIGLIEKWDLKMNGYTYKCLVQAYLRSCD 57

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                 +  +++     LD   FN ++ A  +   V++  ++F  MK++HC PD  T+  
Sbjct: 58  SDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTI 117

Query: 317 MIQAYNALGMTEAAQNLENKMI 338
           MI+    +G  + +  L  +M+
Sbjct: 118 MIRMTGRIGKLDESLALFEEML 139



 Score = 44.3 bits (103), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 88/216 (40%), Gaps = 46/216 (21%)

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEK----MEKWYNEFNLMGVKADIQTLNILTKSYG 182
           ++  G    I T+N +I  +G+  ++E+    +EKW        +K +  T   L ++Y 
Sbjct: 1   MDKNGVRGTISTVNILIGFFGDGEDLERCIGLIEKW-------DLKMNGYTYKCLVQAYL 53

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R+   D    V   M+++ +   +  +N++++   K   +++  + F+ MK +  +P+  
Sbjct: 54  RSCDSDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEY 113

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY                                     +I   G+ G +++   LF  M
Sbjct: 114 TY-----------------------------------TIMIRMTGRIGKLDESLALFEEM 138

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             + C P+ I + TMIQA     M +    L +KM+
Sbjct: 139 LNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMM 174


>gi|168024876|ref|XP_001764961.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683770|gb|EDQ70177.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 743

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 134/276 (48%), Gaps = 2/276 (0%)

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           +C+PD YT++ LI S +K +  D        M   G+  S +TY+ ++  Y + +K  E 
Sbjct: 42  ECEPDQYTFNTLIMSASKANYVDYATITFQLMLQTGVLPSILTYSMMLLLYQRHRKVAEA 101

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           ES FS M+ SG     +   + MI+ Y   G  EK E+   E     V  D         
Sbjct: 102 ESVFSHMLNSG--VQAVVAYSVMIALYNREGLFEKSEQIVTEMRRNNVTPDRDNWLKQLN 159

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +YG+ G  ++   +MD +++      +V YN +I  +GKA   +K     +KM+   + P
Sbjct: 160 TYGQQGKIEEAERIMDTVEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKMREEDLVP 219

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +SITY  ++ A  + G + +  S   +++  ++   +  FN +IS YG+A DVE +  + 
Sbjct: 220 DSITYSCMIGACGRVGKLKEALSWFAEMKRLEIKPASSNFNTLISLYGKAKDVEGIVRVI 279

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
             MK+  C PD  T    ++AY+  G+ +    + N
Sbjct: 280 TEMKKYGCKPDWQTLDAAVRAYDRAGLIKDVTEILN 315



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 151/322 (46%), Gaps = 4/322 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A  LF  + S   +  +  Y  +++ Y +  + + A      M+      PD YTY  
Sbjct: 413 KEAEGLFHSLRSSVKRLDIFAYNVMINVYMRCDMPEGAIKVYKLMEE-DHLLPDAYTYHS 471

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +++ C K +     E+I   +    +E   V  N +++   K    EEM   F  M++ G
Sbjct: 472 MLRMCQKCNLPAQAEEIYWRLRNSDVELDEVMCNCVLNTCAKFLPLEEMHKLFQEMIDVG 531

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P   T N MI  YG +G  E+  K        G  AD  + + L  +Y +   +  M
Sbjct: 532 YV-PYNITFNVMIDLYGKAGMPERAHKALKLAQQFG-SADKISFSTLVHAYAKKQDFPNM 589

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
            + +  MQ   +  ++  YN +++ +GKAG +EK+ +   +M++ GM+ +  +Y  L++ 
Sbjct: 590 EAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINT 649

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K  +I +++++ R ++   V+ D   +N II  YG A   ++    F  M++    PD
Sbjct: 650 YGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAVYWFKAMQDAGISPD 709

Query: 311 NITFATMIQAYNALG-MTEAAQ 331
            +T+  ++  +   G + EAA+
Sbjct: 710 RVTYMILVSTFERAGNIDEAAR 731



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 165/397 (41%), Gaps = 72/397 (18%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+  + E+A  + + +   G+   +  Y ++++AYG++ L D+A   +  M+   D  PD
Sbjct: 162 GQQGKIEEAERIMDTVEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKMRE-EDLVPD 220

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
             TYS +I +C +  +        AEM  L I+ ++  +NT+I  YGKAK  E +    +
Sbjct: 221 SITYSCMIGACGRVGKLKEALSWFAEMKRLEIKPASSNFNTLISLYGKAKDVEGIVRVIT 280

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSG---------NIEKMEKWYNEFNLMGVKADI---- 171
            M +  GC PD  TL++ + AY  +G         N+ +   W  E    G    +    
Sbjct: 281 EM-KKYGCKPDWQTLDAAVRAYDRAGLIKDVTEILNLLRDAGWVEETGSYGTLLHVYLKC 339

Query: 172 ----QTLNI------------------LTKSYGRAGMYDKMRSVMDFMQKRFFFPT---- 205
               + L I                  L  ++  A M+D  +SV   MQ     P+    
Sbjct: 340 NLPKEALRIFLAMRKAGMAPKEYMCRSLICTFRDAEMFDGAKSVFKEMQVAGVTPSLESS 399

Query: 206 -------------------------------VVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
                                          +  YN++I  + +    E   + +K M+ 
Sbjct: 400 CTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNVMINVYMRCDMPEGAIKVYKLMEE 459

Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
             + P++ TY S++    K  L  + + I  ++ NSDV LD    NC+++   +   +E+
Sbjct: 460 DHLLPDAYTYHSMLRMCQKCNLPAQAEEIYWRLRNSDVELDEVMCNCVLNTCAKFLPLEE 519

Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           M +LF  M +   VP NITF  MI  Y   GM E A 
Sbjct: 520 MHKLFQEMIDVGYVPYNITFNVMIDLYGKAGMPERAH 556



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 142/299 (47%), Gaps = 3/299 (1%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           +C  PE A  ++++M  D L P    Y +++    +  L  +A      +++ SD + D 
Sbjct: 443 RCDMPEGAIKVYKLMEEDHLLPDAYTYHSMLRMCQKCNLPAQAEEIYWRLRN-SDVELDE 501

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
              + ++ +C KF   + + K+  EM  +G     +T+N +ID YGKA   E    +   
Sbjct: 502 VMCNCVLNTCAKFLPLEEMHKLFQEMIDVGYVPYNITFNVMIDLYGKAGMPERAHKALKL 561

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
             + G    D  + ++++ AY    +   ME    E    G  + ++  N +  +YG+AG
Sbjct: 562 AQQFGSA--DKISFSTLVHAYAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILDAYGKAG 619

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             +K+  V+  M+       + +YNI+I T+GK   I +ME  F+ M+  G+ P+  TY 
Sbjct: 620 QMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYN 679

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           +++  Y  A    +     + ++++ +  D   +  ++S + +AG++++     L M +
Sbjct: 680 TIIRTYGFADYPDRAVYWFKAMQDAGISPDRVTYMILVSTFERAGNIDEAARWCLRMSQ 738



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 148/325 (45%), Gaps = 3/325 (0%)

Query: 13  ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
           A++ F++ML  G+ PS+  Y+ ++  Y +   + EA S  + M  ++     V  YS++I
Sbjct: 66  ATITFQLMLQTGVLPSILTYSMMLLLYQRHRKVAEAESVFSHM--LNSGVQAVVAYSVMI 123

Query: 73  KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
               +   F+  E+I+ EM    +      +   ++ YG+  K EE E      VE  G 
Sbjct: 124 ALYNREGLFEKSEQIVTEMRRNNVTPDRDNWLKQLNTYGQQGKIEEAERIMDT-VEESGM 182

Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
              +   NSMI+AYG +   +K  +   +     +  D  T + +  + GR G   +  S
Sbjct: 183 SLGLVGYNSMITAYGKACLYDKAARLVEKMREEDLVPDSITYSCMIGACGRVGKLKEALS 242

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
               M++    P    +N +I  +GKA  +E +     +MK  G KP+  T  + V AY 
Sbjct: 243 WFAEMKRLEIKPASSNFNTLISLYGKAKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYD 302

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
           +AGLI  V  IL  + ++  + +T  +  ++  Y +    ++   +FL M++    P   
Sbjct: 303 RAGLIKDVTEILNLLRDAGWVEETGSYGTLLHVYLKCNLPKEALRIFLAMRKAGMAPKEY 362

Query: 313 TFATMIQAYNALGMTEAAQNLENKM 337
              ++I  +    M + A+++  +M
Sbjct: 363 MCRSLICTFRDAEMFDGAKSVFKEM 387



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 3/226 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+   LF+ M+  G  P    +  ++  YG++G+ + A   +   +       D  ++S 
Sbjct: 518 EEMHKLFQEMIDVGYVPYNITFNVMIDLYGKAGMPERAHKALKLAQQFGSA--DKISFST 575

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+ +  K   F  +E  L EM   G   S   YN+I+D YGKA + E++ S   A +E+ 
Sbjct: 576 LVHAYAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKV-SDVLARMENS 634

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G   D+ + N +I+ YG +  I +ME  +      GV  D  T N + ++YG A   D+ 
Sbjct: 635 GMRMDLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRA 694

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
                 MQ     P  VTY I++ TF +AG+I++   +  +M   G
Sbjct: 695 VYWFKAMQDAGISPDRVTYMILVSTFERAGNIDEAARWCLRMSQAG 740



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 141/320 (44%), Gaps = 2/320 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E++  +   M  + + P  D +   ++ YGQ G ++EA   I D    S     +  Y+ 
Sbjct: 133 EKSEQIVTEMRRNNVTPDRDNWLKQLNTYGQQGKIEEA-ERIMDTVEESGMSLGLVGYNS 191

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           +I +  K   +D   +++ +M    +   ++TY+ +I   G+  K +E  S F+ M +  
Sbjct: 192 MITAYGKACLYDKAARLVEKMREEDLVPDSITYSCMIGACGRVGKLKEALSWFAEM-KRL 250

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P     N++IS YG + ++E + +   E    G K D QTL+   ++Y RAG+   +
Sbjct: 251 EIKPASSNFNTLISLYGKAKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYDRAGLIKDV 310

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ ++   +     +Y  ++  + K    ++    F  M+  GM P      SL+  
Sbjct: 311 TEILNLLRDAGWVEETGSYGTLLHVYLKCNLPKEALRIFLAMRKAGMAPKEYMCRSLICT 370

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           +  A +     S+ ++++ + V         +I  YG  GDV++   LF +++      D
Sbjct: 371 FRDAEMFDGAKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKRLD 430

Query: 311 NITFATMIQAYNALGMTEAA 330
              +  MI  Y    M E A
Sbjct: 431 IFAYNVMINVYMRCDMPEGA 450



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 1/229 (0%)

Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
            YN +    G   ++ +++      ++   C PD +T N++I +   +  ++     +  
Sbjct: 13  AYNIMFKILGARHEWSKIDDFLGGKMQEDECEPDQYTFNTLIMSASKANYVDYATITFQL 72

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               GV   I T +++   Y R     +  SV   M        VV Y+++I  + + G 
Sbjct: 73  MLQTGVLPSILTYSMMLLLYQRHRKVAEAESVFSHMLNS-GVQAVVAYSVMIALYNREGL 131

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
            EK E+   +M+   + P+   +   ++ Y + G I + + I+  VE S + L    +N 
Sbjct: 132 FEKSEQIVTEMRRNNVTPDRDNWLKQLNTYGQQGKIEEAERIMDTVEESGMSLGLVGYNS 191

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           +I+AYG+A   +K   L   M+E   VPD+IT++ MI A   +G  + A
Sbjct: 192 MITAYGKACLYDKAARLVEKMREEDLVPDSITYSCMIGACGRVGKLKEA 240



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 147/357 (41%), Gaps = 50/357 (14%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           KC  P++A  +F  M   G+ P   +  +L+  +  + + D A S   +M+ V+   P  
Sbjct: 338 KCNLPKEALRIFLAMRKAGMAPKEYMCRSLICTFRDAEMFDGAKSVFKEMQ-VAGVTPS- 395

Query: 66  YTYSILIKSCTKFHRFDLIEKIL-AEMSYLGIECSA-----VTYNTIIDGYGKAKKFEEM 119
                L  SCT  + + +   +  AE  +  +  S        YN +I+ Y +    E  
Sbjct: 396 -----LESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNVMINVYMRCDMPEGA 450

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
              +  M E     PD +T +SM+          + E+ Y       V+ D    N +  
Sbjct: 451 IKVYKLM-EEDHLLPDAYTYHSMLRMCQKCNLPAQAEEIYWRLRNSDVELDEVMCNCVLN 509

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           +  +    ++M  +   M    + P  +T+N++I+ +GKAG  E+  +  K  +  G   
Sbjct: 510 TCAKFLPLEEMHKLFQEMIDVGYVPYNITFNVMIDLYGKAGMPERAHKALKLAQQFG-SA 568

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK----- 294
           + I++ +LV AY+K      +++ L +++N+        +N I+ AYG+AG +EK     
Sbjct: 569 DKISFSTLVHAYAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVL 628

Query: 295 ------------------------------MGELFLTMKERHCVPDNITFATMIQAY 321
                                         M  LF TM+E   VPD  T+ T+I+ Y
Sbjct: 629 ARMENSGMRMDLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTY 685


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 147/324 (45%), Gaps = 2/324 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           +F  +L  G  P       L+      G +  A    +D       + D  +Y  LI   
Sbjct: 150 VFANILKRGYHPDAITLNTLIKGLCFCGEIKRALY-FHDKVVAQGFQLDQVSYGTLINGL 208

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K      + ++L ++    ++   V Y TII    K K+  +    +S M+  G   P+
Sbjct: 209 CKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKG-ISPN 267

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           +FT N++I  +   GN+++     NE  L  +  D+ T NIL  + G+ G  D+  S+ +
Sbjct: 268 VFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFE 327

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+ +  FP +VTY  +I+   K  H+E+     KKMK +G++P+  +Y  L+ A  K G
Sbjct: 328 EMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGG 387

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
            +       + +      L+   +N +I+   +AG    + +L   M+ + C+PD ITF 
Sbjct: 388 RLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFK 447

Query: 316 TMIQAYNALGMTEAAQNLENKMIA 339
           T+I A       + A+    +MIA
Sbjct: 448 TIICALFEKDENDKAEKFLREMIA 471



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 117/234 (50%), Gaps = 2/234 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K+   A  L+  M+  G+ P+V  Y  L+  +   G L EAFS +N+MK + +  P
Sbjct: 243 LCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMK-LKNINP 301

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           DVYT++ILI +  K  + D    +  EM +  +  + VTY ++IDG  K    E   +  
Sbjct: 302 DVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALC 361

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
             M E G   PD+++   ++ A    G +E  ++++    + G   +++T N++     +
Sbjct: 362 KKMKEQG-IQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCK 420

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
           AG++  +  +   M+ +   P  +T+  +I    +    +K E++ ++M  RG+
Sbjct: 421 AGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIARGL 474



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/275 (21%), Positives = 122/275 (44%), Gaps = 1/275 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P  + +  ++ S  K   +  +  +  +    G+  +  T N +I+ +          S 
Sbjct: 91  PPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSV 150

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ +++ G  HPD  TLN++I      G I++   ++++    G + D  +   L     
Sbjct: 151 FANILKRGY-HPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLC 209

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +AG    +  ++  ++     P VV Y  +I    K   +    + + +M  +G+ PN  
Sbjct: 210 KAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVF 269

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY +L+  +   G + +  S+L +++  ++  D   FN +I A G+ G +++   LF  M
Sbjct: 270 TYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEM 329

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           K ++  P+ +T+ ++I         E A  L  KM
Sbjct: 330 KHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKM 364


>gi|296081889|emb|CBI20894.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 153/330 (46%), Gaps = 3/330 (0%)

Query: 5   GKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           G   +PE++  L E+M  D  ++P++  Y  LV A+     + +A++ +  M + S  +P
Sbjct: 188 GIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVA-SGLQP 246

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY+ +  +  +       E I+ EM    ++ +  T   II GY K  K +E    F
Sbjct: 247 DAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEA-LQF 305

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              ++  G  P++   NS+I  + ++ + + + +        GVK D+ T + +  ++  
Sbjct: 306 VYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSA 365

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  DK R + D M K    P    Y+I+ + + +AG  EK EE    M   G  PN + 
Sbjct: 366 AGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVI 425

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + ++++ +  AG +     I  ++    +  +   F  +I  YG+A    K  E+   M+
Sbjct: 426 FTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIME 485

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           E +  P+  T   + +A+ A G+ + A  +
Sbjct: 486 EFNVQPEKTTLLLVAEAWRATGLKKEANRI 515



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 160/332 (48%), Gaps = 5/332 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P++   + + ++  G KPS+  YT L++A       D   S I+ ++  +  +PD   +
Sbjct: 87  RPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE-NGMEPDSIFF 145

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I + ++        K   +M   G + +  T+NT+I GYG A + EE +     M +
Sbjct: 146 NAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQ 205

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNILTKSYGRAGM 186
                P++ T N ++ A+ N  NI  M+ W   + ++  G++ D  T N +  +Y + G 
Sbjct: 206 DENVRPNLRTYNVLVRAWCNKKNI--MKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGE 263

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
             +   ++  MQ     P   T  I+I  + K G I++  ++  +MK  G++PN + + S
Sbjct: 264 ASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNS 323

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+  +  A     V+ +L  +E   V  D   F+ I++A+  AG ++K  E+F  M +  
Sbjct: 324 LIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKAR 383

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             PD   ++ + + Y   G  E A+ + N MI
Sbjct: 384 IQPDAHVYSILAKGYVRAGEPEKAEEILNAMI 415



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 121/260 (46%), Gaps = 9/260 (3%)

Query: 1   MVMLGKCKQPE-QASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK+ + + +L F   + D GL+P++ V+ +L+  +  +   D     +  M+  
Sbjct: 288 IIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEF 347

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              KPDV T+S ++ + +     D   +I  +M    I+  A  Y+ +  GY +A + E+
Sbjct: 348 G-VKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEK 406

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E   +AM++SG  HP++    ++I+ + ++G +E   K + +    G+  +++T   L 
Sbjct: 407 AEEILNAMIKSG-FHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLI 465

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF-----KKMK 233
             YG A    K   V+  M++    P   T  +V E +   G  ++          ++M 
Sbjct: 466 WGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEEMT 525

Query: 234 HRGMKPNSITYCSLVSAYSK 253
           H   + + I   SL   Y K
Sbjct: 526 HETDREDKIPVGSLEKHYQK 545



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 4/124 (3%)

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           NI+IE     G  ++++     +   G KP+ +TY +L++A +       + SI+ QVE 
Sbjct: 80  NIMIE----KGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE 135

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
           + +  D+ FFN +I+A+ ++G++++  + F  MKE    P   TF T+I+ Y   G  E 
Sbjct: 136 NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEE 195

Query: 330 AQNL 333
           +Q L
Sbjct: 196 SQKL 199



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 90/174 (51%), Gaps = 5/174 (2%)

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           V++  + +NI+ +     G   +++S++D + +    P++VTY  ++       H + + 
Sbjct: 72  VRSRTKLMNIMIEK----GRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIH 127

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
               +++  GM+P+SI + ++++A+S++G + +      +++ S     T  FN +I  Y
Sbjct: 128 SIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGY 187

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNI-TFATMIQAYNALGMTEAAQNLENKMIA 339
           G AG+ E+  +L   M +   V  N+ T+  +++A+        A N+  KM+A
Sbjct: 188 GIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVA 241


>gi|225430029|ref|XP_002281569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Vitis vinifera]
          Length = 635

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 153/330 (46%), Gaps = 3/330 (0%)

Query: 5   GKCKQPEQASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           G   +PE++  L E+M  D  ++P++  Y  LV A+     + +A++ +  M + S  +P
Sbjct: 188 GIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVA-SGLQP 246

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D  TY+ +  +  +       E I+ EM    ++ +  T   II GY K  K +E    F
Sbjct: 247 DAVTYNTIATAYAQNGEASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEA-LQF 305

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              ++  G  P++   NS+I  + ++ + + + +        GVK D+ T + +  ++  
Sbjct: 306 VYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSA 365

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG  DK R + D M K    P    Y+I+ + + +AG  EK EE    M   G  PN + 
Sbjct: 366 AGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEKAEEILNAMIKSGFHPNVVI 425

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           + ++++ +  AG +     I  ++    +  +   F  +I  YG+A    K  E+   M+
Sbjct: 426 FTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLIWGYGEARQPWKSEEVLQIME 485

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           E +  P+  T   + +A+ A G+ + A  +
Sbjct: 486 EFNVQPEKTTLLLVAEAWRATGLKKEANRI 515



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 160/332 (48%), Gaps = 5/332 (1%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +P++   + + ++  G KPS+  YT L++A       D   S I+ ++  +  +PD   +
Sbjct: 87  RPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE-NGMEPDSIFF 145

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + +I + ++        K   +M   G + +  T+NT+I GYG A + EE +     M +
Sbjct: 146 NAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEESQKLLELMSQ 205

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQTLNILTKSYGRAGM 186
                P++ T N ++ A+ N  NI  M+ W   + ++  G++ D  T N +  +Y + G 
Sbjct: 206 DENVRPNLRTYNVLVRAWCNKKNI--MKAWNVVYKMVASGLQPDAVTYNTIATAYAQNGE 263

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
             +   ++  MQ     P   T  I+I  + K G I++  ++  +MK  G++PN + + S
Sbjct: 264 ASQAEGIILEMQNSNVQPNERTCCIIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNS 323

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+  +  A     V+ +L  +E   V  D   F+ I++A+  AG ++K  E+F  M +  
Sbjct: 324 LIKGFIDAVDRDGVNEVLTLMEEFGVKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKAR 383

Query: 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
             PD   ++ + + Y   G  E A+ + N MI
Sbjct: 384 IQPDAHVYSILAKGYVRAGEPEKAEEILNAMI 415



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 121/260 (46%), Gaps = 9/260 (3%)

Query: 1   MVMLGKCKQPE-QASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++ G CK+ + + +L F   + D GL+P++ V+ +L+  +  +   D     +  M+  
Sbjct: 288 IIIGGYCKEGKIKEALQFVYRMKDLGLQPNLVVFNSLIKGFIDAVDRDGVNEVLTLMEEF 347

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
              KPDV T+S ++ + +     D   +I  +M    I+  A  Y+ +  GY +A + E+
Sbjct: 348 G-VKPDVITFSTIMNAWSAAGFMDKCREIFDDMVKARIQPDAHVYSILAKGYVRAGEPEK 406

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
            E   +AM++SG  HP++    ++I+ + ++G +E   K + +    G+  +++T   L 
Sbjct: 407 AEEILNAMIKSG-FHPNVVIFTTIINGWCSAGRMEYAIKIFEKMCECGIAPNLKTFETLI 465

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF-----KKMK 233
             YG A    K   V+  M++    P   T  +V E +   G  ++          ++M 
Sbjct: 466 WGYGEARQPWKSEEVLQIMEEFNVQPEKTTLLLVAEAWRATGLKKEANRILSAVKNEEMT 525

Query: 234 HRGMKPNSITYCSLVSAYSK 253
           H   + + I   SL   Y K
Sbjct: 526 HETDREDKIPVGSLEKHYQK 545



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 4/124 (3%)

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           NI+IE     G  ++++     +   G KP+ +TY +L++A +       + SI+ QVE 
Sbjct: 80  NIMIE----KGRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIHSIISQVEE 135

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
           + +  D+ FFN +I+A+ ++G++++  + F  MKE    P   TF T+I+ Y   G  E 
Sbjct: 136 NGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGYGIAGEPEE 195

Query: 330 AQNL 333
           +Q L
Sbjct: 196 SQKL 199



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 90/174 (51%), Gaps = 5/174 (2%)

Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           V++  + +NI+ +     G   +++S++D + +    P++VTY  ++       H + + 
Sbjct: 72  VRSRTKLMNIMIEK----GRPQEVQSILDSIIEGGHKPSLVTYTTLLAALTIQKHFDSIH 127

Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
               +++  GM+P+SI + ++++A+S++G + +      +++ S     T  FN +I  Y
Sbjct: 128 SIISQVEENGMEPDSIFFNAVINAFSESGNMQEAMKYFWKMKESGSKPTTSTFNTLIKGY 187

Query: 287 GQAGDVEKMGELFLTMKERHCVPDNI-TFATMIQAYNALGMTEAAQNLENKMIA 339
           G AG+ E+  +L   M +   V  N+ T+  +++A+        A N+  KM+A
Sbjct: 188 GIAGEPEESQKLLELMSQDENVRPNLRTYNVLVRAWCNKKNIMKAWNVVYKMVA 241


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 164/401 (40%), Gaps = 71/401 (17%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + + PEQA      M+  GL P  + +  L+    +S   ++A+   N+ K   + K DV
Sbjct: 94  RSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKG--NVKLDV 151

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           Y++ I+IK C +    D   ++L +M  +G+  + V Y T+IDG  K    E  +  F  
Sbjct: 152 YSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYK 211

Query: 126 MVESG----------------------------------GCHPDIFTLNSMISAYGNSGN 151
           M E                                    G  P+++T NSMI    N G 
Sbjct: 212 MGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGK 271

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILT--------------------------------- 178
           +    + ++E    GV  ++ T N L                                  
Sbjct: 272 LNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNT 331

Query: 179 --KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
               Y   G  DK  S+ + M+     P++ TYNI+I  F +A +   + +  ++M+ RG
Sbjct: 332 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 391

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + P+ +TY  L+ A  ++  I K   I   +E + ++ D   +  +I      GD+++  
Sbjct: 392 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 451

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +LF ++ E H  P+++ + TMI  Y   G +  A  L  +M
Sbjct: 452 KLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEM 492



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 136/291 (46%), Gaps = 10/291 (3%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           YT L++ + + GL  +       MK ++   P+VYTY+ +I  C    + +   ++  EM
Sbjct: 224 YTVLINGFFKMGLKKDGIELYEKMK-LTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEM 282

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
              G+ C+ VTYNT+I G  + ++  E E     M +  G  P++ + N++I  Y + GN
Sbjct: 283 RERGVACNVVTYNTLIGGLCQERRVLEAERLMCRM-KRDGLSPNLISYNTLIDGYCSIGN 341

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA----GMYDKMRSVMDFMQKRFFFPTVV 207
           ++K    +N+    G    + T NIL   +  A    G+ D +R     M+ R   P+ V
Sbjct: 342 LDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVRE----MEARGLSPSKV 397

Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
           TY I+++   ++ +IEK  + +  M+  G+  +   Y  L+      G + +   + + +
Sbjct: 398 TYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSL 457

Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
           +   +  +   +N +I  Y + G   +   L   M E   VP+  ++ + I
Sbjct: 458 DEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTI 508



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 5/247 (2%)

Query: 5   GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G C++    +A  L   M  DGL P++  Y  L+  Y   G LD+A S  N MKS S   
Sbjct: 300 GLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKS-SGQS 358

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P + TY+ILI   ++      +  ++ EM   G+  S VTY  ++D   ++   E+    
Sbjct: 359 PSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQI 418

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           +S+M E  G   DI+    +I      G++++  K +   + M +K +    N +   Y 
Sbjct: 419 YSSM-EKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYC 477

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   +   ++  M +    P V +YN  I    K     + E   K M   G+KP SI
Sbjct: 478 KEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKP-SI 536

Query: 243 TYCSLVS 249
           +  +++S
Sbjct: 537 SIWNMIS 543



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 105/272 (38%), Gaps = 35/272 (12%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           L+E M   G+ P+V  Y +++      G L+ AF   ++M+       +V TY+ LI   
Sbjct: 243 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRE-RGVACNVVTYNTLIGGL 301

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----- 130
            +  R    E+++  M   G+  + ++YNT+IDGY      ++  S F+ M  SG     
Sbjct: 302 CQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSL 361

Query: 131 -----------------------------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
                                        G  P   T   ++ A   S NIEK  + Y+ 
Sbjct: 362 ATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSS 421

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G+ ADI    +L       G   +   +   + +    P  V YN +I  + K G 
Sbjct: 422 MEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGS 481

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
             +     K+M   GM PN  +Y S +    K
Sbjct: 482 SYRALRLLKEMGENGMVPNVASYNSTIXILCK 513



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 2/136 (1%)

Query: 203 FPT-VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
           FPT V+ +  +I    ++   E+   Y  +M  RG+ P S T+ +L+    K+    K  
Sbjct: 78  FPTHVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAW 137

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +  + +  +V LD   F  +I    + G ++K  E+   M+E    P+ + + T+I   
Sbjct: 138 RVFNETK-GNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGC 196

Query: 322 NALGMTEAAQNLENKM 337
              G  E  + L  KM
Sbjct: 197 CKNGDIERGKQLFYKM 212


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 147/330 (44%), Gaps = 38/330 (11%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
           LF+ M   G +P+V ++T L+  + + G +D A S +++MKS S    D+  Y++ I S 
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKS-SSLDADIVLYNVCIDSF 248

Query: 76  TKFHRFDLIEKILAEM-------------SYLGIECSA---------------------- 100
            K  + D+  K   E+             S +G+ C A                      
Sbjct: 249 GKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT 308

Query: 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160
             YNT+I GYG A KF+E  S       + G  P +   N +++     G +++  K + 
Sbjct: 309 YAYNTMIMGYGSAGKFDEAYSLLERQ-RAKGSIPSVIAYNCILTCLRKMGKVDEALKVFE 367

Query: 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           E        ++ T NIL     RAG  D    + D MQK   FP V T NI+++   K+ 
Sbjct: 368 EMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQ 426

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
            +++    F++M ++   P+ IT+CSL+    K G +     +  ++ +SD   ++  + 
Sbjct: 427 KLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYT 486

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPD 310
            +I  +   G  E   +++  M  ++C PD
Sbjct: 487 SLIKNFFNHGRKEDGHKIYKDMINQNCSPD 516



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 144/320 (45%), Gaps = 11/320 (3%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G   + ++A  L E   + G  PSV  Y  +++   + G +DEA     +MK   D  P+
Sbjct: 319 GSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK--DAAPN 376

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + TY+ILI    +  + D   ++   M   G+  +  T N ++D   K++K +E  + F 
Sbjct: 377 LSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFE 436

Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI----LTKS 180
            M +   C PD  T  S+I   G  G ++   K Y +     + +D +T +I    L K+
Sbjct: 437 EM-DYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM----LDSDCRTNSIVYTSLIKN 491

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
           +   G  +    +   M  +   P +   N  ++   KAG  EK    F+++K R   P+
Sbjct: 492 FFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPD 551

Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
           + +Y  L+    KAG   +   +   ++    +LDT  +N +I  + + G V K  +L  
Sbjct: 552 ARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLE 611

Query: 301 TMKERHCVPDNITFATMIQA 320
            MK +   P  +T+ ++I  
Sbjct: 612 EMKTKGFEPTVVTYGSVIDG 631



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 139/313 (44%), Gaps = 2/313 (0%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           K  +PE+   +FE + +    P    Y+ L+    ++G  +E +     MK    C  D 
Sbjct: 529 KAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKE-QGCVLDT 587

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
             Y+I+I    K  + +   ++L EM   G E + VTY ++IDG  K  + +E    F  
Sbjct: 588 RAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 647

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
             +S     ++   +S+I  +G  G I++      E    G+  ++ T N L  +  +A 
Sbjct: 648 -AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAE 706

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             ++       M++    P  VTY I+I    K     K   ++++M+ +GMKP++I+Y 
Sbjct: 707 EINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYT 766

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
           +++S  +KAG I +  ++  + + +  + D+  +N +I              LF   + R
Sbjct: 767 TMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRR 826

Query: 306 HCVPDNITFATMI 318
                N T   ++
Sbjct: 827 GLPIHNKTCVVLL 839



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/355 (21%), Positives = 153/355 (43%), Gaps = 38/355 (10%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +  L K  + ++A  +FE M  D   P++  Y  L+    ++G LD AF   + M+    
Sbjct: 350 LTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAG- 407

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+V T +I++    K  + D    +  EM Y       +T+ ++IDG GK  + ++  
Sbjct: 408 LFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAY 467

Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
             +  M++S  C  +     S+I  + N G  E   K Y +        D+Q LN     
Sbjct: 468 KVYEKMLDSD-CRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDC 526

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTY------------------------------- 209
             +AG  +K R++ + ++ R F P   +Y                               
Sbjct: 527 MFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLD 586

Query: 210 ----NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
               NIVI+ F K G + K  +  ++MK +G +P  +TY S++   +K   + +   +  
Sbjct: 587 TRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFE 646

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
           + ++  + L+   ++ +I  +G+ G +++   +   + ++   P+  T+ +++ A
Sbjct: 647 EAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDA 701



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 152/373 (40%), Gaps = 38/373 (10%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVD------------------------------ 30
           ++++ +C+  +    +   M   G  PSV+                              
Sbjct: 105 LLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKF 164

Query: 31  -----VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
                 YT L+ A+      D   +    M+ +   +P V+ ++ LI+   K  R D   
Sbjct: 165 RPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELG-YEPTVHLFTTLIRGFAKEGRVDSAL 223

Query: 86  KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
            +L EM    ++   V YN  ID +GK  K  +M   F   +E+ G  PD  T  SMI  
Sbjct: 224 SLLDEMKSSSLDADIVLYNVCIDSFGKVGKV-DMAWKFFHEIEANGLKPDEVTYTSMIGV 282

Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
              +  +++  + +               N +   YG AG +D+  S+++  + +   P+
Sbjct: 283 LCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPS 342

Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
           V+ YN ++    K G +++  + F++MK +   PN  TY  L+    +AG +     +  
Sbjct: 343 VIAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRD 401

Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            ++ + +  +    N ++    ++  +++   +F  M  + C PD ITF ++I     +G
Sbjct: 402 SMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVG 461

Query: 326 MTEAAQNLENKMI 338
             + A  +  KM+
Sbjct: 462 RVDDAYKVYEKML 474



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 121/268 (45%), Gaps = 3/268 (1%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+ Y   +L+ +  +   FD +++IL EMS  G   S  T   ++ G  KA K  E    
Sbjct: 98  PESYNSLLLVMA--RCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLRE-GYD 154

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M+      P      ++I A+    + + M   + +   +G +  +     L + + 
Sbjct: 155 VVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFA 214

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D   S++D M+       +V YN+ I++FGK G ++   ++F +++  G+KP+ +
Sbjct: 215 KEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEV 274

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY S++    KA  + +   +   +E +  +  T  +N +I  YG AG  ++   L    
Sbjct: 275 TYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQ 334

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
           + +  +P  I +  ++     +G  + A
Sbjct: 335 RAKGSIPSVIAYNCILTCLRKMGKVDEA 362



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 145/317 (45%), Gaps = 2/317 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++ ++A  +FE M      P    + +L+   G+ G +D+A+     M   SDC+ 
Sbjct: 422 LCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLD-SDCRT 480

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +   Y+ LIK+     R +   KI  +M            NT +D   KA + E+  + F
Sbjct: 481 NSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMF 540

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              +++    PD  + + +I     +G   +  + +      G   D +  NI+   + +
Sbjct: 541 EE-IKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCK 599

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  +K   +++ M+ + F PTVVTY  VI+   K   +++    F++ K + ++ N + 
Sbjct: 600 CGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVI 659

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y SL+  + K G I +   IL ++    +  +   +N ++ A  +A ++ +    F +MK
Sbjct: 660 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMK 719

Query: 304 ERHCVPDNITFATMIQA 320
           E  C P+ +T+  +I  
Sbjct: 720 ELKCTPNQVTYGILING 736



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 139/351 (39%), Gaps = 35/351 (9%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM-------- 55
           LGK  + + A  ++E ML    + +  VYT+L+  +   G  ++      DM        
Sbjct: 457 LGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPD 516

Query: 56  ----KSVSDCK----------------------PDVYTYSILIKSCTKFHRFDLIEKILA 89
                +  DC                       PD  +YSILI    K    +   ++  
Sbjct: 517 LQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFY 576

Query: 90  EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
            M   G       YN +IDG+ K  K  +       M ++ G  P + T  S+I      
Sbjct: 577 SMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEM-KTKGFEPTVVTYGSVIDGLAKI 635

Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
             +++    + E     ++ ++   + L   +G+ G  D+   +++ + ++   P + T+
Sbjct: 636 DRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTW 695

Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
           N +++   KA  I +    F+ MK     PN +TY  L++   K     K     ++++ 
Sbjct: 696 NSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQK 755

Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
             +   T  +  +IS   +AG++ + G LF   K    VPD+  +  MI+ 
Sbjct: 756 QGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEG 806


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 153/369 (41%), Gaps = 36/369 (9%)

Query: 6   KCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           KC + E     F  M+  G +   V   T +V    + G +  A   +N+M +     P 
Sbjct: 158 KCNKVELCVRFFRRMVESGRVDIGVQSLTIVVDVLCRRGEVGRAKELMNEM-AARGVVPT 216

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           V+TY+ L+ +C      + +++IL  M   G+  S VTY  +I+ Y  +++  E E  + 
Sbjct: 217 VFTYNTLLNACVVRKDREGVDEILGLMEREGVVASLVTYTILIEWYASSERIGEAEKVYE 276

Query: 125 AMVESG----------------------------------GCHPDIFTLNSMISAYGNSG 150
            M E                                    G  P+  T  ++IS    +G
Sbjct: 277 EMCERNVEMDVYVYTSMISWNCRAGNVRRASALFDEMICRGIVPNTXTFGALISGVCKAG 336

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
            +E  E    E    GV  ++   N +   Y + GM D+   + D M+++ F   V TYN
Sbjct: 337 QMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYN 396

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           I+     K    E+ +     M  +G+ PN +T  + +  Y + G + + +  LR +E  
Sbjct: 397 ILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKR 456

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
            V+ +   +N +I AY +   V++   L   M E+  +PD  T+ ++I     +   + A
Sbjct: 457 GVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDKVDEA 516

Query: 331 QNLENKMIA 339
             L N+M+ 
Sbjct: 517 LKLFNEMLV 525



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 152/341 (44%), Gaps = 5/341 (1%)

Query: 3   MLGKC---KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           +L  C   K  E    +  +M  +G+  S+  YT L+  Y  S  + EA     +M    
Sbjct: 223 LLNACVVRKDREGVDEILGLMEREGVVASLVTYTILIEWYASSERIGEAEKVYEEMCE-R 281

Query: 60  DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
           + + DVY Y+ +I    +         +  EM   GI  +  T+  +I G  KA + E  
Sbjct: 282 NVEMDVYVYTSMISWNCRAGNVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAA 341

Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
           E     M +  G   ++   N+M+  Y   G +++  +  +     G +AD+ T NIL  
Sbjct: 342 EILLEEM-QCKGVDLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILAS 400

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
              +   Y++ + V++ M ++   P VVT    IE + + G++ + E + + ++ RG+ P
Sbjct: 401 GLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVP 460

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           N +TY +L+ AYSK   + +   +  ++    ++ D   +  +I        V++  +LF
Sbjct: 461 NIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDKVDEALKLF 520

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
             M  +    +  T+  +I   +  G  + A  L ++M+ M
Sbjct: 521 NEMLVKGIRGNVKTYTAIISGLSKEGRADEALKLYDEMMRM 561



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 144/313 (46%), Gaps = 14/313 (4%)

Query: 12  QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK---PDVYTY 68
           +A  ++E M    ++  V VYT+++S   ++G +  A +  ++M     C+   P+  T+
Sbjct: 270 EAEKVYEEMCERNVEMDVYVYTSMISWNCRAGNVRRASALFDEMI----CRGIVPNTXTF 325

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
             LI    K  + +  E +L EM   G++ + V +NT++DGY K    +E       ++E
Sbjct: 326 GALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEA-FRLQDIME 384

Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
             G   D+FT N + S        E+ ++  N     GV  ++ T     + Y + G   
Sbjct: 385 RKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLA 444

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +    +  ++KR   P +VTYN +I+ + K   +++      +M  +G+ P+  TY SL+
Sbjct: 445 EPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLI 504

Query: 249 SAYSKAGLIMKVDSILR---QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
                  ++ KVD  L+   ++    +  +   +  IIS   + G  ++  +L+  M   
Sbjct: 505 HGEC---IVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALKLYDEMMRM 561

Query: 306 HCVPDNITFATMI 318
             +PD+  F  ++
Sbjct: 562 GLIPDDRVFEALV 574



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 115/251 (45%), Gaps = 4/251 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  Q E A +L E M   G+  +V ++  ++  Y + G++DEAF  + D+      +
Sbjct: 331 GVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEAFR-LQDIMERKGFE 389

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            DV+TY+IL     K HR++  +++L  M   G+  + VT  T I+ Y +     E E  
Sbjct: 390 ADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPER- 448

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F   +E  G  P+I T N++I AY  +  +++      E    G+  D+ T   L     
Sbjct: 449 FLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGEC 508

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
                D+   + + M  +     V TY  +I    K G  ++  + + +M   G+ P+  
Sbjct: 509 IVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALKLYDEMMRMGLIPDDR 568

Query: 243 TYCSLVSAYSK 253
            + +LV +  K
Sbjct: 569 VFEALVGSLHK 579


>gi|297849764|ref|XP_002892763.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297338605|gb|EFH69022.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 804

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 161/345 (46%), Gaps = 17/345 (4%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLK-PSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
           +++ G+C+    +   +L + MLS G +  S+  Y+ ++S   ++G +DEA S   D+++
Sbjct: 351 ILLCGQCQLGNIDMGLILLKDMLSRGFELKSIIPYSVMLSGLCKTGRVDEALSLFYDLEA 410

Query: 58  VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
                PD+  YSI+I    K  +FD+  ++  EM Y  I  ++ T   I+ G  +     
Sbjct: 411 YG-LTPDLVAYSIVIHGLCKLGKFDMAVRVYDEMCYKRILPNSRTLGAIMLGLCQKGMLL 469

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
           E  S   +++ SG    DI   N +I  Y  SG IE+  + +      G+  ++ T N L
Sbjct: 470 EARSLLDSLISSGDT-LDIILYNIVIDGYAKSGCIEEALELFKVAIESGITPNVATFNSL 528

Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
              Y +     + R ++D ++     P+VV+Y  +++ +   G I+ +EE  ++MK  G+
Sbjct: 529 IYGYCKTQNIAEARKILDVIKLYGLVPSVVSYTTLMDAYANCGSIKSIEELRREMKAEGI 588

Query: 238 KPNSITYCSLVSAYSKAG------------LIMKVDSILRQVENSDVILDTPFFNCIISA 285
            P ++TY  +     +              ++ K + +LR +E+  +  D   +N II  
Sbjct: 589 PPTNVTYSVIFKGLCRGWKLENCNQVLRERILEKFNHVLRDMESEGITPDQITYNTIIQY 648

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
             +   + +  ELF  MK ++  P + T+  +I +    G    A
Sbjct: 649 LCRVKHLSRAFELFKKMKSQNLDPTSATYNILIDSLCIYGCIRKA 693



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 138/332 (41%), Gaps = 7/332 (2%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           + A   F  +L  GL PSV  +  L++     G + EA    +DM      +PD  TY+I
Sbjct: 258 DMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNK-HGVEPDSVTYNI 316

Query: 71  LIKSCTKFHRFDLIE---KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
           L+K    FH   +I    +++ +M   G+    +TY  ++ G  +    +        M+
Sbjct: 317 LVKG---FHLLGMISGAGEVIQDMLDKGLSPDVITYTILLCGQCQLGNIDMGLILLKDML 373

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
             G     I   + M+S    +G +++    + +    G+  D+   +I+     + G +
Sbjct: 374 SRGFELKSIIPYSVMLSGLCKTGRVDEALSLFYDLEAYGLTPDLVAYSIVIHGLCKLGKF 433

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D    V D M  +   P   T   ++    + G + +       +   G   + I Y  +
Sbjct: 434 DMAVRVYDEMCYKRILPNSRTLGAIMLGLCQKGMLLEARSLLDSLISSGDTLDIILYNIV 493

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           +  Y+K+G I +   + +    S +  +   FN +I  Y +  ++ +  ++   +K    
Sbjct: 494 IDGYAKSGCIEEALELFKVAIESGITPNVATFNSLIYGYCKTQNIAEARKILDVIKLYGL 553

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           VP  +++ T++ AY   G  ++ + L  +M A
Sbjct: 554 VPSVVSYTTLMDAYANCGSIKSIEELRREMKA 585



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 146/335 (43%), Gaps = 10/335 (2%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + +  +++  + + M    L  S   Y +++  + ++  + + +  I D         + 
Sbjct: 155 RLRMVDESLYILKKMKDRNLNVSTQSYNSVLYNFRETDKMWDVYKEIKD--------KNE 206

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           +TYS ++    +  + +     L    +  I  S V++N+I+  Y K   F +M  SF  
Sbjct: 207 HTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSSYCKL-GFVDMAKSFFC 265

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
            V   G  P +++ N +I+     G+I +  +  ++ N  GV+ D  T NIL K +   G
Sbjct: 266 TVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILVKGFHLLG 325

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT-Y 244
           M      V+  M  +   P V+TY I++    + G+I+      K M  RG +  SI  Y
Sbjct: 326 MISGAGEVIQDMLDKGLSPDVITYTILLCGQCQLGNIDMGLILLKDMLSRGFELKSIIPY 385

Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
             ++S   K G + +  S+   +E   +  D   ++ +I    + G  +    ++  M  
Sbjct: 386 SVMLSGLCKTGRVDEALSLFYDLEAYGLTPDLVAYSIVIHGLCKLGKFDMAVRVYDEMCY 445

Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           +  +P++ T   ++      GM   A++L + +I+
Sbjct: 446 KRILPNSRTLGAIMLGLCQKGMLLEARSLLDSLIS 480



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 117/294 (39%), Gaps = 28/294 (9%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  LF+V +  G+ P+V  + +L+  Y ++  + EA   I D+  +    P V +Y+ 
Sbjct: 504 EEALELFKVAIESGITPNVATFNSLIYGYCKTQNIAEA-RKILDVIKLYGLVPSVVSYTT 562

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV--- 127
           L+ +         IE++  EM   GI  + VTY+ I  G  +  K E         +   
Sbjct: 563 LMDAYANCGSIKSIEELRREMKAEGIPPTNVTYSVIFKGLCRGWKLENCNQVLRERILEK 622

Query: 128 --------ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
                   ES G  PD  T N++I       ++ +  + + +     +     T NIL  
Sbjct: 623 FNHVLRDMESEGITPDQITYNTIIQYLCRVKHLSRAFELFKKMKSQNLDPTSATYNILID 682

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
           S    G   K    +  +QKR    +   Y  VI+     G  E     F ++  RG   
Sbjct: 683 SLCIYGCIRKADRFLYSLQKRNVSLSKFAYTTVIKAHCVKGDPEMAVILFNQLLDRGFNV 742

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           +   Y ++++   +  L                 +++ +F C++ + G + D++
Sbjct: 743 SIRDYSAVINRLCRRHL----------------AIESKYFFCLMLSRGISPDLD 780



 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 66/139 (47%), Gaps = 6/139 (4%)

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
           P+VV++N ++ ++ K G ++  + +F  +   G+ P+  ++  L++     G I +   +
Sbjct: 239 PSVVSFNSIMSSYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSIAEALEL 298

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
              +    V  D+  +N ++  +   G +   GE+   M ++   PD IT+  ++     
Sbjct: 299 ASDMNKHGVEPDSVTYNILVKGFHLLGMISGAGEVIQDMLDKGLSPDVITYTILLCGQCQ 358

Query: 324 LGMTEAAQNLENKMIAMKE 342
           LG      N++  +I +K+
Sbjct: 359 LG------NIDMGLILLKD 371


>gi|357449533|ref|XP_003595043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484091|gb|AES65294.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1070

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 157/324 (48%), Gaps = 13/324 (4%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           +PE +   F+  +  G +P++  YTA+V+A  + G +DE    +  M+       DV  Y
Sbjct: 180 KPELSLWFFDNFM--GSRPNLVTYTAVVNALCKLGRVDEVCGLVRKMEE-DGLDLDVVLY 236

Query: 69  SILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           S+ +  C       L+E  + + EM   GI    V+Y  +IDG+ K    E+  +  + M
Sbjct: 237 SVWV--CGYVEEKVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKM 294

Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           ++ G   P+  T  +++SAY   G IE+    +     MG++ D     +L   +GR G 
Sbjct: 295 IKEG-IIPNKVTYTAIMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGD 353

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
           +D++  ++  M+KR   P VVTYN V+    K G  ++ +E+ K      +  + +TY +
Sbjct: 354 FDRVFQLLVEMEKRGIGPNVVTYNAVVNGLSKYGRTQEADEFSK-----NVTADVVTYST 408

Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
           L+  Y++   ++ +    +++E + + +D    N +I A       E +  L+  M E  
Sbjct: 409 LLHGYTEEDNVLGILQTKKRLEEAGISMDVVMCNVLIRALFMMQAYEDVYALYKGMPEMD 468

Query: 307 CVPDNITFATMIQAYNALGMTEAA 330
            VP++IT+ TMI  Y  +G    A
Sbjct: 469 LVPNSITYCTMIDGYCKVGKINEA 492



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 129/269 (47%), Gaps = 14/269 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E++      M+ +G+ P+   YTA++SAY + G ++EAF     MK +   + D + + +
Sbjct: 285 EKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEEAFGLFVRMKDMG-IELDEFVFVV 343

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG---YGKAKKFEEMESSFSAMV 127
           LI    +   FD + ++L EM   GI  + VTYN +++G   YG+ ++ +E   + +A  
Sbjct: 344 LIDGFGRVGDFDRVFQLLVEMEKRGIGPNVVTYNAVVNGLSKYGRTQEADEFSKNVTA-- 401

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
                  D+ T ++++  Y    N+  + +        G+  D+   N+L ++      Y
Sbjct: 402 -------DVVTYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVMCNVLIRALFMMQAY 454

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           + + ++   M +    P  +TY  +I+ + K G I +  E F   +   +   +  Y S+
Sbjct: 455 EDVYALYKGMPEMDLVPNSITYCTMIDGYCKVGKINEALEVFDDFRKTSISSYA-CYNSI 513

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDT 276
           ++   K G++      L ++++  ++LDT
Sbjct: 514 INGLCKKGMVEMAIEALLELDHKGLMLDT 542



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 103/209 (49%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P++ T  ++++A    G ++++     +    G+  D+   ++    Y    +  ++
Sbjct: 193 GSRPNLVTYTAVVNALCKLGRVDEVCGLVRKMEEDGLDLDVVLYSVWVCGYVEEKVLVEV 252

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
              M  M ++      V+Y I+I+ F K G +EK   +  KM   G+ PN +TY +++SA
Sbjct: 253 FRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSA 312

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y K G I +   +  ++++  + LD   F  +I  +G+ GD +++ +L + M++R   P+
Sbjct: 313 YCKKGRIEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPN 372

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
            +T+  ++   +  G T+ A      + A
Sbjct: 373 VVTYNAVVNGLSKYGRTQEADEFSKNVTA 401



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 79/176 (44%)

Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
           GV  +I   N +       G   +   + D ++K     + +TY  +I    + G+++  
Sbjct: 744 GVNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDA 803

Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
           E  FKKM   G +P +  Y SL+ A SK G + K   +L  +E   +  D    + +I+ 
Sbjct: 804 EHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVINC 863

Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
           Y Q GD+E   E +   K +   PD + F  MI+     G  E  +++  +M+  K
Sbjct: 864 YCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIRGLCTKGRMEETRSVLREMLQSK 919



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 4/171 (2%)

Query: 164 LMGVKADIQTL----NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
           LMGV+ D+  +     ++     + G  +K   +   ++K+     +V YN +I      
Sbjct: 703 LMGVQDDLPVMYVDYGVVIHGLCKGGYLNKALDLCTLIEKKGVNLNIVIYNSIINGLCHD 762

Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
           G + +    F  ++   +  + ITY +L+ A  + G +   + + +++  +     T  +
Sbjct: 763 GCLIEAFRLFDSLEKLNLMTSEITYATLIYALCREGYLQDAEHVFKKMVLNGFQPKTQVY 822

Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           N ++ A  + G +EK  EL   M++++   DN T +++I  Y   G  E A
Sbjct: 823 NSLLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVINCYCQKGDMEGA 873



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 1/176 (0%)

Query: 95  GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
           G+  + V YN+II+G        E    F ++ +      +I T  ++I A    G ++ 
Sbjct: 744 GVNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEI-TYATLIYALCREGYLQD 802

Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
            E  + +  L G +   Q  N L  +  + G  +K   +++ M+K++      T + VI 
Sbjct: 803 AEHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDMEKQYIKFDNFTVSSVIN 862

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            + + G +E   E++ K K + + P+ + +  ++      G + +  S+LR++  S
Sbjct: 863 CYCQKGDMEGALEFYYKFKGKDISPDFLGFLYMIRGLCTKGRMEETRSVLREMLQS 918



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 75/177 (42%), Gaps = 7/177 (3%)

Query: 162 FNLMGVKADIQTLNILTKSYGRA-GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220
           +N   V   +  L +L K  GRA   Y  +  V D +   +     V Y +VI    K G
Sbjct: 675 YNSSAVTFPVSILKVLIKE-GRALDAYKLLMGVQDDLPVMY-----VDYGVVIHGLCKGG 728

Query: 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280
           ++ K  +    ++ +G+  N + Y S+++     G +++   +   +E  +++     + 
Sbjct: 729 YLNKALDLCTLIEKKGVNLNIVIYNSIINGLCHDGCLIEAFRLFDSLEKLNLMTSEITYA 788

Query: 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
            +I A  + G ++    +F  M      P    + +++ A + +G  E A  L N M
Sbjct: 789 TLIYALCREGYLQDAEHVFKKMVLNGFQPKTQVYNSLLVATSKIGQLEKAFELLNDM 845


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 153/331 (46%), Gaps = 38/331 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG+  +   A  LFE    +G   +V  ++A++SAYG++G   +A               
Sbjct: 188 LGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVD------------- 234

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESS 122
                                  +   M   G+  + ++YN++ID   K +  F+ +   
Sbjct: 235 -----------------------LFRSMRSWGVYPNLISYNSLIDAGAKGEVDFDVVVKF 271

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M+  G   PD  T NS++S   + G  E  +K  +E +  G+  D  T N    +  
Sbjct: 272 FDEMLAEG-IVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLC 330

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  D  R V++ M  R  +PTVVTY+ +I+   KA  +E     +++MK R +  + +
Sbjct: 331 KGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRV 390

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           +Y ++V  Y+K G   +     +++E+  +  D   +N ++S YG+ G  +++  LF  M
Sbjct: 391 SYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEM 450

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNL 333
           K  +  P+ +T++TMI  Y   GM + A ++
Sbjct: 451 KAWNIYPNTLTYSTMIDVYTKGGMFQEAMDV 481



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 137/278 (49%), Gaps = 2/278 (0%)

Query: 16  LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
            F+ ML++G+ P    Y +L+S     G+ + A   +++M      + D +TY+  + + 
Sbjct: 271 FFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVR-DAFTYNTYLDTL 329

Query: 76  TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
            K  + DL  ++L EMS   +  + VTY+T+IDG  KA   E+  + +  M +      D
Sbjct: 330 CKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEM-KLRSISVD 388

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
             + N+M+  Y   G  ++      E    G+K D+ T N L   YGR GMYD++R + +
Sbjct: 389 RVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFE 448

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M+    +P  +TY+ +I+ + K G  ++  + +K  K   ++ + + Y S++ +  K G
Sbjct: 449 EMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNG 508

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
           L+     +L  +    +  +   FN II A  Q+  +E
Sbjct: 509 LVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSPTLE 546



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 92/201 (45%), Gaps = 3/201 (1%)

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
           +++MI   G  G I    + +    L G    + + + +  +YGR G +     +   M+
Sbjct: 181 VSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMR 240

Query: 199 KRFFFPTVVTYNIVIETFGKAGHI--EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256
               +P +++YN +I+  G  G +  + + ++F +M   G+ P+ +TY SL+S  +  G+
Sbjct: 241 SWGVYPNLISYNSLIDA-GAKGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGM 299

Query: 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316
                 +L +++   ++ D   +N  +    + G ++    +   M  R   P  +T++T
Sbjct: 300 WETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYST 359

Query: 317 MIQAYNALGMTEAAQNLENKM 337
           MI       + E A NL  +M
Sbjct: 360 MIDGCAKANLLEDALNLYEEM 380



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 1/113 (0%)

Query: 5   GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
           G+    ++   LFE M +  + P+   Y+ ++  Y + G+  EA     D K  +  + D
Sbjct: 435 GRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKK-AQLEVD 493

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           V  Y+ +I S  K    +    +L  M   GI+ + VT+N+IID   ++   E
Sbjct: 494 VVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSPTLE 546


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 134/306 (43%), Gaps = 2/306 (0%)

Query: 32  YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
           YT L+     +G +D+A      M S   C+P V+TY++L+    K  R    E +L EM
Sbjct: 164 YTILIKGLCAAGRIDDACRVFAKM-SRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEM 222

Query: 92  SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
              G+  + VTYN +I G  +  +F+++      M E     PD +T   ++      G 
Sbjct: 223 VNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKM-EIQRHSPDCWTYTQVVHGLCKHGK 281

Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
           +    K  +E    GV  ++ T N L   Y + G       V+  M++    P V T+N 
Sbjct: 282 VGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNE 341

Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
           VI  F   G + K   +  +M   G+ PN++T+ SL+S     G       +L  +E   
Sbjct: 342 VIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYG 401

Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
           V+ D   +   I A    G +E+   LF  +  +     N+ + +++  Y  +G  ++A 
Sbjct: 402 VLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAF 461

Query: 332 NLENKM 337
            L  KM
Sbjct: 462 GLMEKM 467



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 142/318 (44%), Gaps = 6/318 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++  +A  L   M++ G+ P+V  Y AL+    Q G  D+    +  M+ +    P
Sbjct: 206 LCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKME-IQRHSP 264

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D +TY+ ++    K  +     K+L E    G+    +TYN +I+GY K     +M+++ 
Sbjct: 265 DCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGG---DMKAAL 321

Query: 124 SAM--VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
             +  ++    +P + T N +I  +   G + K   +  +    G+  +  T N L    
Sbjct: 322 DVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQ 381

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
              G       ++D M++    P   TY I I+     G +E+    F  +  +G+K ++
Sbjct: 382 CSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHN 441

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           + Y SLV  Y + G I     ++ ++ + + + D   +N +I    +   +++  +L   
Sbjct: 442 VIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDK 501

Query: 302 MKERHCVPDNITFATMIQ 319
           MK++   P   TF  +I+
Sbjct: 502 MKKQGIEPTTCTFNILIK 519



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 139/317 (43%), Gaps = 18/317 (5%)

Query: 9   QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           Q E+A  LF  +   G+K    +YT+LV  Y Q G +D AF  +  M S  +C PDV+TY
Sbjct: 421 QLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMAS-ENCMPDVHTY 479

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
           + LI    K  R D    +L +M   GIE +  T+N +I      KK  +    +  M+ 
Sbjct: 480 NTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMIS 539

Query: 129 SGGCHPD--IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
           S GC PD   +TL      +  +   E ++    E +  GV  D++T N + K+Y  AG+
Sbjct: 540 S-GCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGL 598

Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVI--------------ETFGKAGHIEKMEEYFKKM 232
            +K       M      P   TY+I++              E   K   +  ++E F++M
Sbjct: 599 KEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQM 658

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
                 P   TY +L+        + +V+ +L +++ + ++LD    + ++  Y      
Sbjct: 659 CESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKMQGNSILLDEDMSDYLLGCYCNLEMY 718

Query: 293 EKMGELFLTMKERHCVP 309
            +  E F +M  +   P
Sbjct: 719 REACEQFRSMAHQSFQP 735



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 144/344 (41%), Gaps = 8/344 (2%)

Query: 2   VMLGKCKQPE---QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           V+ G CK  +    A +L E  +  G+   V  Y AL++ Y + G +  A   +  MK  
Sbjct: 272 VVHGLCKHGKVGHGAKVLHEA-IGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKR- 329

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           +   P V T++ +I       +       L +M+  G+  + VT+N++I G     +  +
Sbjct: 330 NRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGE-RK 388

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
           +      ++E  G  PD  T    I A  + G +E+    ++   + G+KA       L 
Sbjct: 389 IALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLV 448

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
             Y + G  D    +M+ M      P V TYN +I+   K   +++  +   KMK +G++
Sbjct: 449 HGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIE 508

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA--YGQAGDVEKMG 296
           P + T+  L+              +  Q+ +S    D   +   IS   +  A   E + 
Sbjct: 509 PTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENID 568

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
              + M E    PD  T+  +I+AY   G+ E A     KM+++
Sbjct: 569 MAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSV 612



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 108/279 (38%)

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           S   P+  TY+ LI +  K          L  M   G+     TYN ++ G  +A     
Sbjct: 84  SGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAA 143

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               F  M    G   D ++   +I     +G I+   + + + +    +  + T  +L 
Sbjct: 144 ACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLL 203

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               +     +  +++  M  +   P VVTYN +I    + G  + + +  +KM+ +   
Sbjct: 204 DGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHS 263

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P+  TY  +V    K G +     +L +     V L+   +N +I+ Y + GD++   ++
Sbjct: 264 PDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDV 323

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              MK     P   TF  +I  +   G    A     +M
Sbjct: 324 LQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQM 362



 Score = 41.2 bits (95), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 98/248 (39%), Gaps = 26/248 (10%)

Query: 20  MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK-SCTK- 77
           M   G+ P V+ Y A++ AY  +GL ++AF     M SV    PD  TYSIL+   C K 
Sbjct: 574 MHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVP-IDPDCTTYSILLNYMCNKD 632

Query: 78  ----------FHRFDL--IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
                     +   D+  ++++  +M          TY  ++ G     + EE+E     
Sbjct: 633 DSDAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLLLK 692

Query: 126 MVESGGCHPDIFTLNSMISAY--GNSGNIEKMEKWYNEFNLMG---VKADIQTLNILTKS 180
           M        +   L+  +S Y  G   N+E   +   +F  M     +  +++  +L   
Sbjct: 693 M------QGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSG 746

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
              +G +    S+   M    +    V + ++I+   + GH     E    M  +    +
Sbjct: 747 LCDSGDHGMAVSIFSDMLGLGYNYDEVVWKLLIDCLHEKGHAGACLEMLSVMDAKKCVAS 806

Query: 241 SITYCSLV 248
           + TY SLV
Sbjct: 807 TRTYASLV 814



 Score = 39.3 bits (90), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 1/121 (0%)

Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
           +A  +  +   F  M   G  PN  TY +L++A+ K  L+    + L ++  + +  DT 
Sbjct: 67  RAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTF 126

Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERH-CVPDNITFATMIQAYNALGMTEAAQNLENK 336
            +NC++    +AG +     LF+ M  R     D  ++  +I+   A G  + A  +  K
Sbjct: 127 TYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACRVFAK 186

Query: 337 M 337
           M
Sbjct: 187 M 187


>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 540

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 156/353 (44%), Gaps = 16/353 (4%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M GK  + E A+  F  +   G  P    Y  L+ A+ + G++D+A     + +  S C 
Sbjct: 173 MFGKAGRHEDAAATFRELQMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQR-SFCL 231

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY-------GKAKK 115
            D   +  +I+   K    D    +L  M  +G++ + + Y ++++ +       G  K 
Sbjct: 232 DDPVIFYTMIQVYAKARMADQALHVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKL 291

Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
           FEEM+ S     ES        T  +M++ Y  +G     E+   +   +G + ++   +
Sbjct: 292 FEEMQESNCRFGES--------TYITMLNVYSKAGFHSAAEELLAKMRQLGFRRNVVAYS 343

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L   YG+ G   +   +   M+++     ++ YN +++ +GKAG I   E    ++K  
Sbjct: 344 TLIDMYGKVGKLQEATRLFSTMKQQGCKGNLIVYNTMLDMYGKAGRINDAERLMAELKDS 403

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
            + P+++TY +L++AY++ G   +   +  Q     + LD      +I+ YG+A    K+
Sbjct: 404 KLVPDTVTYTTLINAYNRLGRFEECIRVFEQHRADGLKLDRILVAIMINVYGKARQYSKL 463

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 348
            EL   M +    PD     T+++ Y   GM E A  L  K+  +    G  L
Sbjct: 464 AELLEVMPKSGIQPDTRILKTVVEIYEDGGMCENAAELLRKINELGPLEGNTL 516



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 143/316 (45%), Gaps = 2/316 (0%)

Query: 22  SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
            DG +P   +Y A      +      A   + D     +C PD+  Y+++IK      RF
Sbjct: 17  QDGFEPHFHLYVAFAHCLMRVQKW-VALEILVDEMIGKNCPPDIKFYALVIKEAINTGRF 75

Query: 82  DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
              +   ++M  LG     V YN +I  YGK   F +    FS + + G   PD  T  +
Sbjct: 76  QTAQHWFSKMKLLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQLKDEG-LLPDSGTYCA 134

Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
           ++SA    GNI+K  +   E    G+K D    +IL   +G+AG ++   +    +Q   
Sbjct: 135 VLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFRELQMSG 194

Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
           + P  V YN +I  F K G +++    FK+ +      + + + +++  Y+KA +  +  
Sbjct: 195 YLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMADQAL 254

Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
            +L+ ++   +  +   +  +++A+ +A       +LF  M+E +C     T+ TM+  Y
Sbjct: 255 HVLKLMKEIGLQPNELGYGSVLNAFMRANQPMGAIKLFEEMQESNCRFGESTYITMLNVY 314

Query: 322 NALGMTEAAQNLENKM 337
           +  G   AA+ L  KM
Sbjct: 315 SKAGFHSAAEELLAKM 330



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 126/269 (46%), Gaps = 5/269 (1%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT--YNTIIDGYGK 112
           +KS    +P  + Y        +  ++  +E ++ EM  +G  C      Y  +I     
Sbjct: 14  VKSQDGFEPHFHLYVAFAHCLMRVQKWVALEILVDEM--IGKNCPPDIKFYALVIKEAIN 71

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
             +F+  +  FS M +  GC PDI   N +I  YG  GN  +  K++++    G+  D  
Sbjct: 72  TGRFQTAQHWFSKM-KLLGCPPDIVIYNILILEYGKRGNFSQAMKYFSQLKDEGLLPDSG 130

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T   +  +  + G  DK    +  M++    P  V Y+I+I+ FGKAG  E     F+++
Sbjct: 131 TYCAVLSACRKVGNIDKGNETLKEMREAGIKPDQVAYSILIDMFGKAGRHEDAAATFREL 190

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
           +  G  P+S+ Y +L+ A++K G++ +   + ++ + S  + D   F  +I  Y +A   
Sbjct: 191 QMSGYLPDSVAYNTLIHAFAKVGMVDQATLVFKEAQRSFCLDDPVIFYTMIQVYAKARMA 250

Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAY 321
           ++   +   MKE    P+ + + +++ A+
Sbjct: 251 DQALHVLKLMKEIGLQPNELGYGSVLNAF 279


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 157/372 (42%), Gaps = 35/372 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ LGK    + A  ++  ML+ G++PS+  +  +++   + G + EA   ++ +    D
Sbjct: 174 LIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRY-D 232

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+ +TY+ LI    + H  DL   +   M   G + ++VTY+T+I+G     + EE  
Sbjct: 233 AYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAM 292

Query: 121 SSFSAMVESG----------------------------------GCHPDIFTLNSMISAY 146
                MV+ G                                  GC P+I T  ++IS  
Sbjct: 293 DMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGL 352

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G  E     Y++    G+     T N L       G ++   ++  +M      P+ 
Sbjct: 353 SRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPST 412

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TYN +I+ F   G I+K    F KM   G  PN ITY +L+  Y K G +     +L  
Sbjct: 413 QTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEI 472

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           ++ + +  D   +  +IS + + G +E    LF  M E    P+++T+  +I  Y  L  
Sbjct: 473 MKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK 532

Query: 327 TEAAQNLENKMI 338
            + A  L  KM+
Sbjct: 533 VDDALALFWKMV 544



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 149/340 (43%), Gaps = 6/340 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++LG C+    + A  +F+ M+ DG  P+   Y+ L++     G L+EA   + +M    
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQ-K 301

Query: 60  DCKPDVYTYSI-LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             +P VYTY+I L+  C      + +E +L +M   G   +  T+  +I G  +  KFE 
Sbjct: 302 GIEPTVYTYTIPLVSLCDAGCSSEAVE-LLGKMKKRGCVPNIQTFTALISGLSRDGKFEI 360

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               +  M+ + G  P   T N++I+     G  E     +      G     QT N + 
Sbjct: 361 AIGLYHKML-ADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           K +   G   K   + D M K    P V+TYN +I  + K G++       + MK  G+K
Sbjct: 420 KCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++ TY  L+S +S+ G +    S+   +    +  +   +  II  Y     V+    L
Sbjct: 480 PDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALAL 539

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  M E   +P + T+  MI  ++       A+N   KM+
Sbjct: 540 FWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMV 579



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 147/343 (42%), Gaps = 18/343 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A ++F+ ML  G  P+V  Y  L+  Y + G L+ A   +  MK  +  KPD +TY+ 
Sbjct: 429 QKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKG-NGLKPDAWTYTE 487

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI   ++  + +    +   M   GI  + VTY  IIDGY    K ++  + F  MVESG
Sbjct: 488 LISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESG 547

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P   T N MIS +  + +I + E +  +    G+  ++ T         R G     
Sbjct: 548 NL-PSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLA 606

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY--FKKMKHRGMKPNSITYCSLV 248
             +   M+KR +FP + TY+ +I    + G  E  E Y    ++ H G +PN  TY +LV
Sbjct: 607 FKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLV 666

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                 G   + D ++  ++   +      +  ++    +   VE    +F +M      
Sbjct: 667 KGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSM------ 720

Query: 309 PDNITFATMIQAYNAL-------GMTEAAQNLENKMIAMKENS 344
            D + F   +  Y AL          E AQ +   M+    NS
Sbjct: 721 -DTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNS 762



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 148/327 (45%), Gaps = 2/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  + E M+  G++P+V  YT  + +   +G   EA   +  MK    C P++ T++ 
Sbjct: 289 EEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKK-RGCVPNIQTFTA 347

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI   ++  +F++   +  +M   G+  + VTYN +I+      +FE   + F  M+ S 
Sbjct: 348 LISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWML-SH 406

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P   T N +I  +   G+I+K    +++    G   ++ T N L   Y + G  +  
Sbjct: 407 GSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNA 466

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M+     P   TY  +I  F + G +E     F  M   G+ PN +TY +++  
Sbjct: 467 MRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDG 526

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y     +    ++  ++  S  +  +  +N +IS + +   + +       M ++  +P+
Sbjct: 527 YFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPN 586

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            IT+ + I      G T  A  + ++M
Sbjct: 587 VITYTSFIDGLCRNGRTGLAFKIFHEM 613



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 112/278 (40%), Gaps = 2/278 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P  +   ++IKSC        + + L+E+ S      +  ++ T++   GK    +    
Sbjct: 129 PADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARD 188

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +  M+ SG   P + T N+MI+     G +++ +   +         +  T   L   +
Sbjct: 189 MYIKMLNSG-IRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGH 247

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R    D   ++ D M K    P  VTY+ +I      G +E+  +  ++M  +G++P  
Sbjct: 248 CRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTV 307

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY   + +   AG   +   +L +++    + +   F  +IS   + G  E    L+  
Sbjct: 308 YTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHK 367

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M     VP  +T+  +I      G  E A  +   M++
Sbjct: 368 MLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLS 405


>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 172/367 (46%), Gaps = 36/367 (9%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
           + +  ++A  ++  M S+G +  +  Y  L+ A  +   LD ++    DMK +  C PD 
Sbjct: 246 RSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMK-LKHCNPDE 304

Query: 66  YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           YTY+I+I+   K  R +    +  EM   G   + + YNT+I    K+   ++    F  
Sbjct: 305 YTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCN 364

Query: 126 MVESGGCHPDIFT----LNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD-IQTLNILTKS 180
           M+++  C P+ FT    LN ++ A G  G ++++ +  N+F    + A  ++TL+ L  S
Sbjct: 365 MIKN-NCRPNEFTYSIILNVLV-AEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHS 422

Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTV----------------------------VTYNIV 212
                ++  M S  D   +  +   +                            + YN V
Sbjct: 423 SEAHRLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTV 482

Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
           + T GK   +  + + ++KMK  G  P+  TY  L+S+  + G + +   +  ++E+SD 
Sbjct: 483 LSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDC 542

Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
             D   +N +I+  G+ GDV++    FL M+++   PD +T++T+I+ +      E A++
Sbjct: 543 KPDIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARS 602

Query: 333 LENKMIA 339
           L ++MI 
Sbjct: 603 LFDRMIT 609



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 157/349 (44%), Gaps = 38/349 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           M GK  + E++  LFE ML+ G  P++  Y  ++ A  +SG++D+A     +M   ++C+
Sbjct: 313 MTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIK-NNCR 371

Query: 63  PDVYTYSILIKSCT---KFHRFDLIEKI-------------LAEMSYLG-------IECS 99
           P+ +TYSI++       +  R D + ++             +  +S LG       + C+
Sbjct: 372 PNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCN 431

Query: 100 AVTYNTIIDGYGKAKKFEEMES-----------SFSAMVESGGCHPDIFTLNSMISAYGN 148
             +++   DG  +      +ES              + V   G   D    N+++S  G 
Sbjct: 432 MWSFH---DGGDRDAYISMLESLCRGGKTVEAIELLSKVHEKGISTDTMMYNTVLSTLGK 488

Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
              +  +   Y +    G   DI T NIL  S GR G   +   V + ++     P +++
Sbjct: 489 LKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELESSDCKPDIIS 548

Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
           YN +I   GK G +++    F +M+ +G+ P+ +TY +L+  + K   +    S+  ++ 
Sbjct: 549 YNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMI 608

Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
                 +   +N ++    +AG   +  +L+  ++E+   PD+IT+A +
Sbjct: 609 TQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAIL 657



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 85/176 (48%), Gaps = 2/176 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LGK KQ      L+E M  DG  P +  Y  L+S+ G+ G + EA     +++S SDCKP
Sbjct: 486 LGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVKEAVEVFEELES-SDCKP 544

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D+ +Y+ LI    K    D       EM   G+    VTY+T+I+ +GK  K E   S F
Sbjct: 545 DIISYNSLINCLGKNGDVDEAHMRFLEMQDKGLNPDVVTYSTLIECFGKTDKVEMARSLF 604

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
             M+ + GC P+I T N ++     +G   +    Y +    G+  D  T  IL +
Sbjct: 605 DRMI-TQGCCPNIVTYNILLDCLERAGRTAETVDLYAKLREQGLTPDSITYAILDR 659



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 122/275 (44%), Gaps = 11/275 (4%)

Query: 65  VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
           + T +ILIK  +     +L   ++ +     +  +A TY  ++  + +++   + + +F+
Sbjct: 202 ISTVNILIKIFSSNEDLELCTGLIKKWD---LRLNAYTYRCLLQAHIRSR---DSDRAFN 255

Query: 125 AMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             +E  S G   DIF  N ++ A      +++  K + +  L     D  T  I+ +  G
Sbjct: 256 VYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTYTIMIRMTG 315

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  ++  ++ + M  +   P ++ YN +I+   K+G ++K    F  M     +PN  
Sbjct: 316 KMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCNMIKNNCRPNEF 375

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  +++     G + ++D +L   E S+  ++   +  ++    + G   +   LF  M
Sbjct: 376 TYSIILNVLVAEGQLGRLDEVL---EVSNKFINKSIYAYLVRTLSKLGHSSEAHRLFCNM 432

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              H   D   + +M+++    G T  A  L +K+
Sbjct: 433 WSFHDGGDRDAYISMLESLCRGGKTVEAIELLSKV 467



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 3/152 (1%)

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D++R ++  M +     T+ T NI+I+ F     +E      KK     ++ N+ TY  L
Sbjct: 184 DQVREILSQMDRDQIRGTISTVNILIKIFSSNEDLELCTGLIKKWD---LRLNAYTYRCL 240

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           + A+ ++    +  ++  ++ ++   LD   +N ++ A  +   +++  ++F  MK +HC
Sbjct: 241 LQAHIRSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHC 300

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
            PD  T+  MI+    +G  E +  L  +M+ 
Sbjct: 301 NPDEYTYTIMIRMTGKMGRAEESLALFEEMLT 332



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/203 (21%), Positives = 81/203 (39%), Gaps = 38/203 (18%)

Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
           I T+N +I  + ++ ++E       +++L   + +  T   L +++ R+   D+  +V  
Sbjct: 202 ISTVNILIKIFSSNEDLELCTGLIKKWDL---RLNAYTYRCLLQAHIRSRDSDRAFNVYM 258

Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
            M    +   +  YN++++   K   +++  + FK MK +   P+  TY           
Sbjct: 259 EMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLKHCNPDEYTY----------- 307

Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
                                     +I   G+ G  E+   LF  M  + C P+ I + 
Sbjct: 308 ------------------------TIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYN 343

Query: 316 TMIQAYNALGMTEAAQNLENKMI 338
           TMIQA +  GM + A  L   MI
Sbjct: 344 TMIQALSKSGMVDKAILLFCNMI 366


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 164/377 (43%), Gaps = 41/377 (10%)

Query: 3   MLGKCKQPEQASLLFEVMLS-DGLKPSVDVYTALVSAYGQSGLLDEAFST---INDMKSV 58
           +L  C      SL+F  +    G K +  V+  L+ A+ + GL+DEA      +    +V
Sbjct: 92  LLQSCTPRRVNSLVFNALSQLRGSKFNPSVFGVLIIAFSEVGLVDEALRVYLKVGAFPAV 151

Query: 59  SDCK----------------------------PDVYTYSILIKSCTKFHRFDLIEKILAE 90
             C                             P V TY++L+ +C +       + +++E
Sbjct: 152 QACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISE 211

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M   GIE + V Y T+I G     K  E ES F  M +S G  P+++T N ++  Y  + 
Sbjct: 212 MVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDS-GVFPNLYTYNVLMDGYCKTA 270

Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           N+++    Y      G++ ++ T  IL  +  +       R     M K    P VV +N
Sbjct: 271 NVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFN 330

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
            +I+ + KAG+  +  +   +M+   + P+  TY  L+    + G + + D IL+++E  
Sbjct: 331 SLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKE 390

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLT------MKERHCVPDNITFATMIQAY-NA 323
            V  ++  +N +I  Y + G++EK  E+F        M+     PD + +A M+Q + NA
Sbjct: 391 GVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNA 450

Query: 324 LGMTEAAQNLENKMIAM 340
             M +    L   MI M
Sbjct: 451 KHMADVMM-LHADMIKM 466



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 43/227 (18%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLK-------------------------------- 26
           ++M G CK    +QA  L++ ML DGL+                                
Sbjct: 261 VLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKF 320

Query: 27  ---PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
              P+V V+ +L+  Y ++G   EA   + +M+      PDV+TYSILIK+  +    + 
Sbjct: 321 GVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFK-ISPDVFTYSILIKNACRLGTVEE 379

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM-----VESGGCHPDIFT 138
            + IL  M   G+  ++V YN++IDGY K    E+    F A      +   G  PD   
Sbjct: 380 ADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALA 439

Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
              M+  + N+ ++  +   + +   MG+  +  T  ++ + Y   G
Sbjct: 440 YAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVVRRGYQDNG 486


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 157/372 (42%), Gaps = 35/372 (9%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           ++ LGK    + A  ++  ML+ G++PS+  +  +++   + G + EA   ++ +    D
Sbjct: 174 LIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRY-D 232

Query: 61  CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
             P+ +TY+ LI    + H  DL   +   M   G + ++VTY+T+I+G     + EE  
Sbjct: 233 AYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAM 292

Query: 121 SSFSAMVESG----------------------------------GCHPDIFTLNSMISAY 146
                MV+ G                                  GC P+I T  ++IS  
Sbjct: 293 DMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGL 352

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G  E     Y++    G+     T N L       G ++   ++  +M      P+ 
Sbjct: 353 SRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPST 412

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
            TYN +I+ F   G I+K    F KM   G  PN ITY +L+  Y K G +     +L  
Sbjct: 413 QTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEI 472

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           ++ + +  D   +  +IS + + G +E    LF  M E    P+++T+  +I  Y  L  
Sbjct: 473 MKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK 532

Query: 327 TEAAQNLENKMI 338
            + A  L  KM+
Sbjct: 533 VDDALALFWKMV 544



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 149/340 (43%), Gaps = 6/340 (1%)

Query: 2   VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++LG C+    + A  +F+ M+ DG  P+   Y+ L++     G L+EA   + +M    
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQ-K 301

Query: 60  DCKPDVYTYSI-LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             +P VYTY+I L+  C      + +E +L +M   G   +  T+  +I G  +  KFE 
Sbjct: 302 GIEPTVYTYTIPLVSLCDAGCSSEAVE-LLGKMKKRGCVPNIQTFTALISGLSRDGKFEI 360

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
               +  M+ + G  P   T N++I+     G  E     +      G     QT N + 
Sbjct: 361 AIGLYHKML-ADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
           K +   G   K   + D M K    P V+TYN +I  + K G++       + MK  G+K
Sbjct: 420 KCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
           P++ TY  L+S +S+ G +    S+   +    +  +   +  II  Y     V+    L
Sbjct: 480 PDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALAL 539

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           F  M E   +P + T+  MI  ++       A+N   KM+
Sbjct: 540 FWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMV 579



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 147/343 (42%), Gaps = 18/343 (5%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           ++A ++F+ ML  G  P+V  Y  L+  Y + G L+ A   +  MK  +  KPD +TY+ 
Sbjct: 429 QKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKG-NGLKPDAWTYTE 487

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI   ++  + +    +   M   GI  + VTY  IIDGY    K ++  + F  MVESG
Sbjct: 488 LISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESG 547

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
              P   T N MIS +  + +I + E +  +    G+  ++ T         R G     
Sbjct: 548 NL-PSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLA 606

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY--FKKMKHRGMKPNSITYCSLV 248
             +   M+KR +FP + TY+ +I    + G  E  E Y    ++ H G +PN  TY +LV
Sbjct: 607 FKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLV 666

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
                 G   + D ++  ++   +      +  ++    +   VE    +F +M      
Sbjct: 667 KGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSM------ 720

Query: 309 PDNITFATMIQAYNAL-------GMTEAAQNLENKMIAMKENS 344
            D + F   +  Y AL          E AQ +   M+    NS
Sbjct: 721 -DTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNS 762



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 148/327 (45%), Gaps = 2/327 (0%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A  + E M+  G++P+V  YT  + +   +G   EA   +  MK    C P++ T++ 
Sbjct: 289 EEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKK-RGCVPNIQTFTA 347

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           LI   ++  +F++   +  +M   G+  + VTYN +I+      +FE   + F  M+ S 
Sbjct: 348 LISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWML-SH 406

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P   T N +I  +   G+I+K    +++    G   ++ T N L   Y + G  +  
Sbjct: 407 GSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNA 466

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +++ M+     P   TY  +I  F + G +E     F  M   G+ PN +TY +++  
Sbjct: 467 MRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDG 526

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
           Y     +    ++  ++  S  +  +  +N +IS + +   + +       M ++  +P+
Sbjct: 527 YFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPN 586

Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
            IT+ + I      G T  A  + ++M
Sbjct: 587 VITYTSFIDGLCRNGRTGLAFKIFHEM 613



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 112/278 (40%), Gaps = 2/278 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
           P  +   ++IKSC        + + L+E+ S      +  ++ T++   GK    +    
Sbjct: 129 PADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARD 188

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            +  M+ SG   P + T N+MI+     G +++ +   +         +  T   L   +
Sbjct: 189 MYIKMLNSG-IRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGH 247

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
            R    D   ++ D M K    P  VTY+ +I      G +E+  +  ++M  +G++P  
Sbjct: 248 CRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTV 307

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
            TY   + +   AG   +   +L +++    + +   F  +IS   + G  E    L+  
Sbjct: 308 YTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHK 367

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           M     VP  +T+  +I      G  E A  +   M++
Sbjct: 368 MLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLS 405


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 153/335 (45%), Gaps = 5/335 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           L +C +  QA   F+  L     +P V  YT L++   + G +D AF     M +   C+
Sbjct: 20  LCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCR 79

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+ +TY+ L+    K  R D    ++AE          VTYNT++    +  + +E  ++
Sbjct: 80  PNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALAT 139

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ M E G   P + + N++I+    +  +    + +NE        ++ T +++     
Sbjct: 140 FTQMTEEGYV-PTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLC 198

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           ++   D+ + ++D M      P +V Y  ++  F  AG ++      ++M  +G  P+ +
Sbjct: 199 KSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVV 258

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  ++    K G +     I R++  +    +   ++ +I  Y +A  V++ G++   M
Sbjct: 259 TYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKV---M 315

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           +E  C P+ +T+ TMI   + +   E A  +  +M
Sbjct: 316 REMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREM 350



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 146/319 (45%), Gaps = 8/319 (2%)

Query: 5   GKCK--QPEQASLLFEVMLS-DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
           G CK  + + A  LF  M++  G +P+   Y ALV    +   LD A + I + +   D 
Sbjct: 55  GLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARK-RDF 113

Query: 62  KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
            PDV TY+ L+ +  +  R D       +M+  G   + V++N II G  +A++  +   
Sbjct: 114 APDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALE 173

Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
            F+ M++    HP++ T + +I     S  +++ ++  +     G + D+     L   +
Sbjct: 174 VFNEMIDRDF-HPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGF 232

Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
             AG  D    ++  M  +   P VVTY +VI+   K G ++   E F+++      PN 
Sbjct: 233 SAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNV 292

Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
           +TY +L+  Y +A  + +   ++R++     ++    +N +I         E+   +F  
Sbjct: 293 VTYSALIGGYCRASRVDEGGKVMREMACRPNVVT---YNTMIWGLSMVDRNEEAYGMFRE 349

Query: 302 MKERHCVPDNITFATMIQA 320
           M E   VPD  T+  + +A
Sbjct: 350 MSECGFVPDARTYRGLKRA 368



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 120/276 (43%), Gaps = 1/276 (0%)

Query: 67  TYSILIKSCTKFHRF-DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
           T SI+++   +  R    +E   A +     +   V+Y T+I+G  K  + +     F  
Sbjct: 12  TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 71

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           MV +GGC P+ FT N+++        ++       E        D+ T N L  +  + G
Sbjct: 72  MVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLG 131

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             D+  +    M +  + PT+V++N +I    +A  +    E F +M  R   PN +TY 
Sbjct: 132 RVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYS 191

Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
            ++    K+  + +   +L ++ +     D   +  ++  +  AG ++    L   M  +
Sbjct: 192 VVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQ 251

Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
            C+PD +T+  +I     +G  + A  +  +++A K
Sbjct: 252 GCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANK 287



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 7/182 (3%)

Query: 1   MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +V+ G CK  Q ++A  L + M+S+G +P +  YT LV  +  +G LD A   +  M S 
Sbjct: 192 VVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVS- 250

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C PDV TY+++I    K  R D   +I  E+       + VTY+ +I GY +A + +E
Sbjct: 251 QGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDE 310

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  M     C P++ T N+MI         E+    + E +  G   D +T   L 
Sbjct: 311 GGKVMREM----ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLK 366

Query: 179 KS 180
           ++
Sbjct: 367 RA 368



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 115/253 (45%), Gaps = 7/253 (2%)

Query: 91  MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG 150
           M   G++C+  T + I+ G  +  +  +    F A +E     PD+ +  ++I+     G
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 60

Query: 151 NIEKMEKWYNEFNLM----GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              +++  ++ F  M    G + +  T N L     +    D  R+V+   +KR F P V
Sbjct: 61  ---RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDV 117

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VTYN ++    + G +++    F +M   G  P  +++ ++++   +A  +     +  +
Sbjct: 118 VTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNE 177

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + + D   +   ++ +I    ++  +++  +L   M    C PD + +  ++  ++A G 
Sbjct: 178 MIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGR 237

Query: 327 TEAAQNLENKMIA 339
            ++A  L  +M++
Sbjct: 238 LDSALGLLRRMVS 250


>gi|357135236|ref|XP_003569217.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic-like [Brachypodium distachyon]
          Length = 644

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 152/319 (47%), Gaps = 3/319 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG  +   +A  ++  +    ++  V V  +++    ++G  D  F   ++M       P
Sbjct: 123 LGLSRNAARALQVYGSIQDQSIRVHVSVCNSVLGCLVKNGRYDSTFKLYDEMIR-GGLSP 181

Query: 64  DVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           D++TYS L+  C K  + +    +++ E++Y G++  +V Y T++         EE E  
Sbjct: 182 DLFTYSTLLSGCIKLKQGYAKAMELINELNYRGLQMDSVIYGTLLAICASHNYCEEAEVY 241

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  + + G  +P++F  +S+++AY  + N EK E    +     +  +   L  L K Y 
Sbjct: 242 FQKLKDEGH-NPNLFHYSSLLNAYSENSNYEKAELLMKDLRSSKLIPNKVILTTLLKVYS 300

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G+++K + ++  ++   F    + Y I+I+   K G I +    F +MK +G+K +  
Sbjct: 301 KGGLFEKAKELLTELEASGFAQDEMPYCILIDALAKGGKIWEATMLFNEMKEKGVKSDGY 360

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            +  ++SA  +AG   +   + ++ E+ +   D    N  + AY    D E +  +   M
Sbjct: 361 AFSIMISALHRAGYREEAKQLAKEFEDQNTTYDLVILNTSLRAYCNTNDTESVMRMLKKM 420

Query: 303 KERHCVPDNITFATMIQAY 321
            E +  PD+ITF T+I+ +
Sbjct: 421 DELNISPDHITFNTLIRYF 439



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 4/214 (1%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
           E+A + F+ +  +G  P++  Y++L++AY ++   ++A   + D++S S   P+    + 
Sbjct: 236 EEAEVYFQKLKDEGHNPNLFHYSSLLNAYSENSNYEKAELLMKDLRS-SKLIPNKVILTT 294

Query: 71  LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
           L+K  +K   F+  +++L E+   G     + Y  +ID   K  K  E    F+ M E G
Sbjct: 295 LLKVYSKGGLFEKAKELLTELEASGFAQDEMPYCILIDALAKGGKIWEATMLFNEMKEKG 354

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
               D +  + MISA   +G  E+ ++   EF       D+  LN   ++Y      + +
Sbjct: 355 -VKSDGYAFSIMISALHRAGYREEAKQLAKEFEDQNTTYDLVILNTSLRAYCNTNDTESV 413

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETF--GKAGHI 222
             ++  M +    P  +T+N +I  F  GK  H+
Sbjct: 414 MRMLKKMDELNISPDHITFNTLIRYFCKGKVYHL 447



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 104/270 (38%), Gaps = 38/270 (14%)

Query: 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
           N I+  YG  +K++ +   F  M E      ++ + +S     G S N  +  + Y    
Sbjct: 83  NIILRHYGDIRKWDALSKVFRWMQEHEML--NVASYSSYFKYLGLSRNAARALQVYGSIQ 140

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI-------ETF 216
              ++  +   N +     + G YD    + D M +    P + TY+ ++       + +
Sbjct: 141 DQSIRVHVSVCNSVLGCLVKNGRYDSTFKLYDEMIRGGLSPDLFTYSTLLSGCIKLKQGY 200

Query: 217 GKA-----------------------------GHIEKMEEYFKKMKHRGMKPNSITYCSL 247
            KA                              + E+ E YF+K+K  G  PN   Y SL
Sbjct: 201 AKAMELINELNYRGLQMDSVIYGTLLAICASHNYCEEAEVYFQKLKDEGHNPNLFHYSSL 260

Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
           ++AYS+     K + +++ + +S +I +      ++  Y + G  EK  EL   ++    
Sbjct: 261 LNAYSENSNYEKAELLMKDLRSSKLIPNKVILTTLLKVYSKGGLFEKAKELLTELEASGF 320

Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKM 337
             D + +  +I A    G    A  L N+M
Sbjct: 321 AQDEMPYCILIDALAKGGKIWEATMLFNEM 350



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 110/267 (41%), Gaps = 2/267 (0%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL+    +Y  L++        +EA      +K      P+++ YS L+ + ++   ++ 
Sbjct: 214 GLQMDSVIYGTLLAICASHNYCEEAEVYFQKLKDEGH-NPNLFHYSSLLNAYSENSNYEK 272

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
            E ++ ++    +  + V   T++  Y K   FE+ +   + + E+ G   D      +I
Sbjct: 273 AELLMKDLRSSKLIPNKVILTTLLKVYSKGGLFEKAKELLTEL-EASGFAQDEMPYCILI 331

Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
            A    G I +    +NE    GVK+D    +I+  +  RAG  ++ + +    + +   
Sbjct: 332 DALAKGGKIWEATMLFNEMKEKGVKSDGYAFSIMISALHRAGYREEAKQLAKEFEDQNTT 391

Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
             +V  N  +  +      E +    KKM    + P+ IT+ +L+  + K  +   V   
Sbjct: 392 YDLVILNTSLRAYCNTNDTESVMRMLKKMDELNISPDHITFNTLIRYFCKGKVYHLVYKT 451

Query: 264 LRQVENSDVILDTPFFNCIISAYGQAG 290
           +  +      L+    + ++   G+AG
Sbjct: 452 IEDMHTKGHQLNEELCSEVMLQLGEAG 478


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 151/337 (44%), Gaps = 20/337 (5%)

Query: 3   MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           +L + ++ E    +   M++ G++P+  + TA +    + G   EA              
Sbjct: 196 LLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVG------------ 243

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
                  I  K+  K        K++  M   GIE  ++TYN +I G  K  K EE    
Sbjct: 244 -------IWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKL 296

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M   G   PD+FT N+++ AY N G +E+     ++    G++ DI +   +   + 
Sbjct: 297 HGDMTRRG-FKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHC 355

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +A    K +  +  +  R   P V  YN +I  +G+ G I    +  + MK  G++P ++
Sbjct: 356 KAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNV 415

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY SL+     AGL+ +  +I  Q   ++V L    +  +I  Y + G + +    F  M
Sbjct: 416 TYGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEM 475

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
           + R   P+ +T+ T++ AY+  G +E A  L ++M+ 
Sbjct: 476 RSRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVG 512



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 149/304 (49%), Gaps = 7/304 (2%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K K  ++A+ + + ML+ G++     Y  ++    +   ++EA     DM +    KP
Sbjct: 249 LNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDM-TRRGFKP 307

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           D++T++ L+ +     + +    +L +M   G++   V+Y TIIDG+ KAK   + +   
Sbjct: 308 DLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYL 367

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
           + +++ G   P++F  N++I  YG +G+I             G++    T   L      
Sbjct: 368 TELMDRG-LKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCH 426

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
           AG+ ++ +++    ++      V+ Y I+I+ + K G + +   YF++M+ RG+ PN +T
Sbjct: 427 AGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLT 486

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
           Y +L+ AYSK+G   +   +  ++  S VI D   +  +I+   + G     G+     +
Sbjct: 487 YTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEKG-----GKTTQYGQ 541

Query: 304 ERHC 307
           E HC
Sbjct: 542 ELHC 545



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/385 (20%), Positives = 152/385 (39%), Gaps = 53/385 (13%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSV------------------------------- 29
           M  L K  + E+A  L   M   G+ PSV                               
Sbjct: 53  MDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGV 112

Query: 30  ----DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
                +Y  L+  + + G   +A    ++M  +   KP   TY+++ K+  K    +  E
Sbjct: 113 SPNEVIYNELIGWHCRKGHCSQALRLFDEM-VLKKMKPTAVTYNLIAKALCKEGEMERAE 171

Query: 86  KILAEMSYLGIECSAVTYNTIIDG-YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
           +IL +M  +G+      +NT++     + ++ E + S  + MV  G    D      M  
Sbjct: 172 RILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRE 231

Query: 145 AYGNSGNIEKMEKWYNEFNL----------------MGVKADIQTLNILTKSYGRAGMYD 188
                 + E +  W+   N                  G++ D  T NI+ +   +    +
Sbjct: 232 LCKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKME 291

Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
           +   +   M +R F P + T+N ++  +   G +E+      +MK  G++P+ ++Y +++
Sbjct: 292 EAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTII 351

Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
             + KA  I K    L ++ +  +  +   +N +I  YG+ GD+    +   TMK     
Sbjct: 352 DGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQ 411

Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
           P N+T+ +++      G+ E A+ +
Sbjct: 412 PTNVTYGSLMYWMCHAGLVEEAKTI 436



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 134/355 (37%), Gaps = 55/355 (15%)

Query: 24  GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
           GL+P+V  Y  L+ A  +SG ++EAF     M+      P V T+ ILI    +  RF  
Sbjct: 41  GLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQ-GGMTPSVVTFGILINGLARGERFGE 99

Query: 84  IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
           +  +L EM  LG+  + V YN +I  + +     +    F  MV      P   T N + 
Sbjct: 100 VGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLK-KMKPTAVTYNLIA 158

Query: 144 SAYGNSGNIEKMEK----------------------WY--------------NEFNLMGV 167
            A    G +E+ E+                      W               NE    G+
Sbjct: 159 KALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGM 218

Query: 168 KAD-----------------IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
           + +                  + + I  K+  +     +   V+  M  +      +TYN
Sbjct: 219 RPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYN 278

Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
           I+I    K   +E+  +    M  RG KP+  T+ +L+ AY   G + +   +L Q++  
Sbjct: 279 IMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTE 338

Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
            +  D   +  II  + +A D+ K  E    + +R   P+   +  +I  Y   G
Sbjct: 339 GLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNG 393



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 132/336 (39%), Gaps = 54/336 (16%)

Query: 55  MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
           M+   +   + Y+Y+ +IK+  K  + D   ++LAE+   G++ + VTYN ++D   K+ 
Sbjct: 1   MRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSG 60

Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
           + EE        +E GG  P + T   +I+         ++     E   +GV  +    
Sbjct: 61  RVEE-AFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIY 119

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK---- 230
           N L   + R G   +   + D M  +   PT VTYN++ +   K G +E+ E   +    
Sbjct: 120 NELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLS 179

Query: 231 --------------------------------KMKHRGMKPNSITYCSLVSAYSKAG--- 255
                                           +M  RGM+PN     + +    K G   
Sbjct: 180 IGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQ 239

Query: 256 --------------LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
                          + +   +++ + N  + LD+  +N +I    +   +E+  +L   
Sbjct: 240 EAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGD 299

Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           M  R   PD  TF T++ AY  LG  E   +L ++M
Sbjct: 300 MTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQM 335



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 81/164 (49%)

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           + K+  +AG  D    ++  + +    PTVVTYN++++   K+G +E+      +M+  G
Sbjct: 17  MIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGG 76

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           M P+ +T+  L++  ++     +V  +L+++E   V  +   +N +I  + + G   +  
Sbjct: 77  MTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQAL 136

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
            LF  M  +   P  +T+  + +A    G  E A+ +   M+++
Sbjct: 137 RLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSI 180



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 103/229 (44%), Gaps = 19/229 (8%)

Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
           M ES     + ++  +MI A   +G ++   +   E    G++  + T N+L  +  ++G
Sbjct: 1   MRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSG 60

Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
             ++   +   M++    P+VVT+ I+I    +     ++    ++M+  G+ PN + Y 
Sbjct: 61  RVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYN 120

Query: 246 SLVSAYSKAG-----LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
            L+  + + G     L +  + +L++++ + V      +N I  A  + G++E+   +  
Sbjct: 121 ELIGWHCRKGHCSQALRLFDEMVLKKMKPTAVT-----YNLIAKALCKEGEMERAERILE 175

Query: 301 TMKE----RHCVPDNITFATMIQAYNALGMTEAAQNLENKMI--AMKEN 343
            M       HC   N   A ++Q    L   E+  ++ N+M+   M+ N
Sbjct: 176 DMLSIGMTVHCGLFNTVVAWLLQRTRRL---ESVVSITNEMVTRGMRPN 221


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 161/344 (46%), Gaps = 24/344 (6%)

Query: 1   MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
           +  L + K+ ++A LLF+ M   G+ P V  YT L+ ++ ++GL+++A S  ++M+S + 
Sbjct: 459 ITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRS-AG 517

Query: 61  CKPDVYTYSILI----KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
           C P+V TY+ L+    KS   +   D+  +++ +  Y     +A+TY+ +IDG  KA + 
Sbjct: 518 CSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYP----NAITYSALIDGLCKAGEI 573

Query: 117 EEMESSFSAMV---------------ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
           ++    ++ ++               ++    P++ T  ++++    +  +       + 
Sbjct: 574 QKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDA 633

Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
               G + +    + L   + + G  D  + V   M K  + P+V TY  +I+   K G 
Sbjct: 634 MLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGR 693

Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
           ++   +   +M      PN +TY ++V    K G   K  ++L  +E      +   +  
Sbjct: 694 LDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTA 753

Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
           +I   G+AG V+   ELF+ MK + C P+ +T+  +I    A G
Sbjct: 754 LIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAG 797



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 154/361 (42%), Gaps = 40/361 (11%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           LG CK+      +  +M+++G  PS  ++ +LV  Y  +     A+   N M +   C P
Sbjct: 322 LGWCKR------IINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCG-CPP 374

Query: 64  DVYTYSILIKS-CTK-----FHRFDLIEKILAEMSYLGIECSAVTYNT-----IIDGYGK 112
               Y+I I S C +         DL EK+  EM  L   C     NT      + G GK
Sbjct: 375 GYVVYNIFIGSICGREELPNPELLDLAEKVYEEM--LVASCVLNKINTANFARCLCGVGK 432

Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
              FE+       M+  G   PD  T   +I+    +  ++K    + E   +GV  D+ 
Sbjct: 433 ---FEKAFQIVKEMMRKGFV-PDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVY 488

Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
           T  IL  S+ +AG+ ++ +S  D M+     P VVTY  ++  + K+  + +  + F +M
Sbjct: 489 TYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRM 548

Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF-------------- 278
                 PN+ITY +L+    KAG I K   +  ++  +   +++ F              
Sbjct: 549 VGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNV 608

Query: 279 --FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336
             +  +++   +A  V    +L   M    C P+ I +  ++  +  +G  ++AQ +  +
Sbjct: 609 VTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLR 668

Query: 337 M 337
           M
Sbjct: 669 M 669



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 140/347 (40%), Gaps = 49/347 (14%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD----- 60
           K KQ  QA+ +F  M+ D   P+   Y+AL+    ++G + +A      +   SD     
Sbjct: 534 KSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESD 593

Query: 61  ----------CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110
                       P+V TY  L+    K  +      +L  M   G E + + Y+ ++DG+
Sbjct: 594 FYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGF 653

Query: 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
            K  + +  +  F  M + G   P + T  S+I      G ++   K  ++        +
Sbjct: 654 CKVGEIDSAQEVFLRMTKCGYL-PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPN 712

Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
           + T   +     + G  +K  +++  M+K+   P VVTY  +I+  GKAG ++   E F 
Sbjct: 713 VVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFM 772

Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGL---------------------------------I 257
           +MK +G  PN +TY  L++    AGL                                  
Sbjct: 773 QMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRF 832

Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
           +    +L ++E+ D     P +  +I ++ +AG +E   EL   M E
Sbjct: 833 LASLGLLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMME 879



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 152/344 (44%), Gaps = 11/344 (3%)

Query: 7   CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
           CK+      L +++  +  K    + T ++S   ++ L +EA S ++ M+  S   P+V 
Sbjct: 250 CKEGRWGDAL-DLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYI-PNVV 307

Query: 67  TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
           TY  L+    K  +    ++I+  M   G   S   +N+++  Y  A+ +      F+ M
Sbjct: 308 TYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRM 367

Query: 127 VESGGCHPDIFTLNSMISA------YGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTK 179
             + GC P     N  I +        N   ++  EK Y E  +   V   I T N   +
Sbjct: 368 -NTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTAN-FAR 425

Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
                G ++K   ++  M ++ F P   TY  VI    +A  ++K    F++MK  G+ P
Sbjct: 426 CLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNP 485

Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
           +  TY  L+ ++ KAGLI +  S   ++ ++    +   +  ++ AY ++  + +  ++F
Sbjct: 486 DVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIF 545

Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
             M    C P+ IT++ +I      G  + A  +  K+I   +N
Sbjct: 546 HRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDN 589



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 96/260 (36%), Gaps = 16/260 (6%)

Query: 1   MVMLGKCKQPEQASLLF-EVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           + +LG  + PE     F       G K +   Y AL    G     D A +    ++ + 
Sbjct: 105 VAVLGAVRSPELCVRFFLWAERQVGYKHTGACYDALAEVLG---FEDPARTAERLLREIG 161

Query: 60  DCKPDVY--TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
           +   DV     ++L++ C     +    + L  +   G   SAVTYN ++     A + E
Sbjct: 162 EDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVE 221

Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTL 174
                   M  SG C  D  T+ S   A    G      +W +  +L+     K D    
Sbjct: 222 MAFRVQKEMSASGFCM-DRSTVGSFAQALCKEG------RWGDALDLLEREDFKLDTVLC 274

Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
             +      A ++++  S +  M+   + P VVTY  ++  F K   +   +     M  
Sbjct: 275 TQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMT 334

Query: 235 RGMKPNSITYCSLVSAYSKA 254
            G  P+   + SLV  Y  A
Sbjct: 335 EGCNPSPSLFNSLVHTYCNA 354



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 3/150 (2%)

Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231
           + LN+L +     G++ +    +  ++   + P+ VTYN +++    AG +E      K+
Sbjct: 170 RLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKE 229

Query: 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
           M   G   +  T  S   A  K G   +    L  +E  D  LDT     +IS   +A  
Sbjct: 230 MSASGFCMDRSTVGSFAQALCKEG---RWGDALDLLEREDFKLDTVLCTQMISGLMEASL 286

Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAY 321
             +       M+    +P+ +T+ T++  +
Sbjct: 287 FNEAMSFLHRMRCNSYIPNVVTYRTLLTGF 316


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 147/319 (46%), Gaps = 4/319 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK    ++A  L + ML  G       Y  L+S   + G ++E F    +M      +
Sbjct: 500 GLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK-QGIE 558

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           PD +TY++LI    +  + D    +  E     +  +  TY  +IDGY KA K EE E  
Sbjct: 559 PDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKL 618

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F+ ++ +     +    N++I AY  +GN  +  K +++    G+     T + L     
Sbjct: 619 FTELL-TQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMC 677

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
             G  +  + ++D M+K    P VV Y  +I  + K G ++K+    ++M    + PN I
Sbjct: 678 NIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKI 737

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  ++  YSK+G +     +L ++    ++ DT  +N + + + + G +E+  ++   M
Sbjct: 738 TYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYM 797

Query: 303 KERHCVPDNITFATMIQAY 321
            +     D IT+ T++  +
Sbjct: 798 SQEGLPLDEITYTTLVHGW 816



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 151/326 (46%), Gaps = 4/326 (1%)

Query: 5   GKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+ +   A  L+  +L  G   ++    AL+    ++G + EA   +  M       
Sbjct: 465 GLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVL 524

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            D  TY+ LI  C K  + +   K+  EM   GIE    TYN +I G  +  K +E  + 
Sbjct: 525 -DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNL 583

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           ++   +S    P+++T   MI  Y  +  IE+ EK + E     ++ +    N L ++Y 
Sbjct: 584 WNE-CKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYC 642

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           R G   +   + D M+ +   PT  TY+ +I      G +E  +    +M+  G+ PN +
Sbjct: 643 RNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVV 702

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
            Y +L+  Y K G + KV ++L+++ + D+  +   +  +I  Y ++GD++   +L   M
Sbjct: 703 CYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEM 762

Query: 303 KERHCVPDNITFATMIQAYNALGMTE 328
             +  VPD +T+  +   +   G  E
Sbjct: 763 VGKGIVPDTVTYNVLTNGFCKEGKIE 788



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 132/287 (45%), Gaps = 4/287 (1%)

Query: 5   GKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK+   E+   L   M+  G++P    Y  L+    + G LDEA +  N+ KS  D  
Sbjct: 535 GCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKS-RDLV 593

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P+VYTY ++I    K  + +  EK+  E+    +E ++V YNT+I  Y +     E    
Sbjct: 594 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 653

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M  S G  P   T +S+I    N G +E  +   +E    G+  ++     L   Y 
Sbjct: 654 HDDM-RSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYC 712

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G  DK+ +V+  M      P  +TY ++I+ + K+G ++   +   +M  +G+ P+++
Sbjct: 713 KLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV 772

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289
           TY  L + + K G I +   I   +    + LD   +  ++  + Q 
Sbjct: 773 TYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQP 819



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 152/339 (44%), Gaps = 6/339 (1%)

Query: 2   VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
           ++ G CK  Q EQA  + E MLS G   +   +T ++     +   + A   + +M  + 
Sbjct: 392 IIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREM-LLR 450

Query: 60  DCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
           + +P+    + L+   C +    D +E +   +   G   + VT N +I G  K    +E
Sbjct: 451 NMRPNDGLLTTLVGGLCKEGKHSDAVE-LWFRLLEKGFGANLVTTNALIHGLCKTGNMQE 509

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
                  M+E G    D  T N++IS     G +E+  K   E    G++ D  T N+L 
Sbjct: 510 AVRLLKKMLERGFVL-DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 568

Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
               R G  D+  ++ +  + R   P V TY ++I+ + KA  IE+ E+ F ++  + ++
Sbjct: 569 HGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLE 628

Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
            NS+ Y +L+ AY + G  ++   +   + +  +   T  ++ +I      G +E    L
Sbjct: 629 LNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCL 688

Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
              M++   +P+ + +  +I  Y  LG  +   N+  +M
Sbjct: 689 IDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEM 727



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 144/335 (42%), Gaps = 3/335 (0%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K  + E++  +FE M   G+ P V +++  ++A+ + G +++A     DM+ +    P
Sbjct: 222 LVKANELEKSYWVFETM-RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLG-VSP 279

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +V TY+ LI    K    D   +   +M   G+  + +TY+ +I+G  K +KF E  S  
Sbjct: 280 NVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVL 339

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
              +E  G  P+    N++I  Y   GN+    +   +    G+  +  TLN + + + +
Sbjct: 340 KETLEK-GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCK 398

Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
            G  ++   +++ M  R F      +  +I         E    + ++M  R M+PN   
Sbjct: 399 IGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGL 458

Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
             +LV    K G       +  ++       +    N +I    + G++++   L   M 
Sbjct: 459 LTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKML 518

Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
           ER  V D IT+ T+I      G  E    L  +M+
Sbjct: 519 ERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMV 553



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 148/365 (40%), Gaps = 39/365 (10%)

Query: 11  EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYS 69
           E A  LF  M   G+ P+V  Y  L+    + G LDEAF     M  V D     + TYS
Sbjct: 263 EDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKM--VKDGVNATLITYS 320

Query: 70  ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
           +LI    K  +F+    +L E    G   + V YNT+IDGY K     +       MV S
Sbjct: 321 VLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMV-S 379

Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKME--------------------------------- 156
            G +P+  TLNS+I  +   G +E+ E                                 
Sbjct: 380 KGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFES 439

Query: 157 --KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
             ++  E  L  ++ +   L  L     + G +     +   + ++ F   +VT N +I 
Sbjct: 440 ALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIH 499

Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
              K G++++     KKM  RG   + ITY +L+S   K G + +   +  ++    +  
Sbjct: 500 GLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEP 559

Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
           DT  +N +I    + G +++   L+   K R  VP+  T+  MI  Y      E  + L 
Sbjct: 560 DTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLF 619

Query: 335 NKMIA 339
            +++ 
Sbjct: 620 TELLT 624



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 150/335 (44%), Gaps = 4/335 (1%)

Query: 4   LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
           L K ++  +A+ + +  L  G  P+  VY  L+  Y + G L +A     DM S     P
Sbjct: 326 LMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVS-KGINP 384

Query: 64  DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
           +  T + +I+   K  + +  E IL EM   G   +   + TII       +FE      
Sbjct: 385 NSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFL 444

Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
             M+      P+   L +++      G + + +E W+      G  A++ T N L     
Sbjct: 445 REMLLR-NMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLE-KGFGANLVTTNALIHGLC 502

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           + G   +   ++  M +R F    +TYN +I    K G +E+  +   +M  +G++P++ 
Sbjct: 503 KTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTF 562

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           TY  L+    + G + +  ++  + ++ D++ +   +  +I  Y +A  +E+  +LF  +
Sbjct: 563 TYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTEL 622

Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
             ++   +++ + T+I+AY   G T  A  L + M
Sbjct: 623 LTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDM 657



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 4/224 (1%)

Query: 5   GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           G CK  + E+   LF  +L+  L+ +  VY  L+ AY ++G   EAF   +DM+S     
Sbjct: 605 GYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRS-KGIP 663

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P   TYS LI       R +  + ++ EM   G+  + V Y  +I GY K  + +++ + 
Sbjct: 664 PTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 723

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
              M  S   HP+  T   MI  Y  SG+++   K  +E    G+  D  T N+LT  + 
Sbjct: 724 LQEM-SSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFC 782

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
           + G  ++   + D+M +       +TY  ++  + +   +   E
Sbjct: 783 KEGKIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQPSALTNQE 826



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 2/256 (0%)

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
           P V T + L+ S  K +  +    +   M   G+      ++T I+ + K  K E+    
Sbjct: 210 PTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQL 268

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
           F  M E  G  P++ T N++I      GN+++  ++  +    GV A + T ++L     
Sbjct: 269 FFDM-EKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLM 327

Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
           +   +++  SV+    ++ F P  V YN +I+ + K G++         M  +G+ PNS+
Sbjct: 328 KLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSV 387

Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
           T  S++  + K G + + + IL ++ +    ++   F  II         E        M
Sbjct: 388 TLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREM 447

Query: 303 KERHCVPDNITFATMI 318
             R+  P++    T++
Sbjct: 448 LLRNMRPNDGLLTTLV 463



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 95/209 (45%), Gaps = 1/209 (0%)

Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
           G  P + T   ++S+   +  +EK   W  E    GV  D+   +    ++ + G  +  
Sbjct: 207 GVFPTVKTCTFLLSSLVKANELEK-SYWVFETMRQGVSPDVYLFSTAINAFCKGGKVEDA 265

Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
             +   M+K    P VVTYN +I    K G++++   + +KM   G+    ITY  L++ 
Sbjct: 266 IQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLING 325

Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
             K     + +S+L++        +   +N +I  Y + G++     +   M  +   P+
Sbjct: 326 LMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPN 385

Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
           ++T  ++IQ +  +G  E A+ +  +M++
Sbjct: 386 SVTLNSIIQGFCKIGQMEQAECILEEMLS 414



 Score = 38.9 bits (89), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
           V  F+  +  FPTV T   ++ +  KA  +EK    F+ M+ +G+ P+   + + ++A+ 
Sbjct: 199 VFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMR-QGVSPDVYLFSTAINAFC 257

Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
           K G +     +   +E   V  +   +N +I    + G++++
Sbjct: 258 KGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDE 299


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 164/347 (47%), Gaps = 10/347 (2%)

Query: 1   MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
           +++   CK+   +QA  L + M   G  P +  Y  +V+   Q G +D+A   + ++ S 
Sbjct: 200 ILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSY 259

Query: 59  SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
             C+P+  +Y+I++K      R++  E+++ EM   G   + VT+N +I    + K   E
Sbjct: 260 G-CEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR-KGLVE 317

Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLN 175
                   +   GC P+  + N ++ A+      +KM+K     +LM   G   DI + N
Sbjct: 318 PALEVLEQIPKYGCSPNSLSYNPLLHAFCKQ---KKMDKAMAFLDLMVSRGCYPDIVSYN 374

Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
            L  +  R+G  D    ++  ++ +   P +++YN VI+   KAG  ++  E   +M  +
Sbjct: 375 TLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSK 434

Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
           G++P+ ITY ++ +   +   I        +V++  +  +T  +N II    +  +    
Sbjct: 435 GLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSA 494

Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
            +LF  M    C+P+  T+  +I+     G+ + A++L +++ +  E
Sbjct: 495 IDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGE 541



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 144/313 (46%), Gaps = 5/313 (1%)

Query: 27  PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
           P V  Y A+++ Y  +G +D A     + ++V   + D YT   LI+      R      
Sbjct: 126 PDVMAYNAMMAGYCGAGQVDAARRWCAE-RAV---ERDAYTCDTLIRGLCGRGRTANALA 181

Query: 87  ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
           +L EM         VTY  +++   K   +++       M + G C PDI T N +++  
Sbjct: 182 VLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKG-CTPDIVTYNVVVNGI 240

Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
              G ++   ++       G + +  + NI+ K    A  ++    +M  M ++   P V
Sbjct: 241 CQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 300

Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
           VT+N++I    + G +E   E  +++   G  PNS++Y  L+ A+ K   + K  + L  
Sbjct: 301 VTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDL 360

Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
           + +     D   +N +++A  ++G+V+   EL   +K++ C P  I++ T+I      G 
Sbjct: 361 MVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGK 420

Query: 327 TEAAQNLENKMIA 339
           T+ A  L N+M++
Sbjct: 421 TKEALELLNEMVS 433



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 3/217 (1%)

Query: 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT 173
           KK      +  A      C PD+   N+M++ Y  +G ++   +W  E     V+ D  T
Sbjct: 106 KKLSASGRTAEARRVLAACGPDVMAYNAMMAGYCGAGQVDAARRWCAE---RAVERDAYT 162

Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
            + L +     G      +V+D M +R   P VVTY I++E   K    ++  +   +M+
Sbjct: 163 CDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR 222

Query: 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293
            +G  P+ +TY  +V+   + G +      L+ + +     +T  +N ++     A   E
Sbjct: 223 DKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWE 282

Query: 294 KMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
              EL   M ++ C P+ +TF  +I      G+ E A
Sbjct: 283 DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPA 319


>gi|428179291|gb|EKX48163.1| hypothetical protein GUITHDRAFT_86178 [Guillardia theta CCMP2712]
          Length = 557

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 159/334 (47%), Gaps = 14/334 (4%)

Query: 7   CKQPEQASLLFEVMLSD----GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
           C +P  A   F    S      L+PSV  Y  L+ AYGQ G L+ AF T+N M       
Sbjct: 7   CDRPASAVEAFSYFSSSQHPPSLRPSVHCYGTLIKAYGQLGQLEAAFETLNGMVKGGPA- 65

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI----ECSAVTYNTIIDGYGKAKKFEE 118
           P +   + L+++C +       + + + +   G+    + + V++N +++ Y + +K E+
Sbjct: 66  PSIRVINALLQACVRAGNLTAAQTLFSSLRGAGLCISLQPTGVSFNIMVNAYARRRKVEK 125

Query: 119 MESSFSAMVE--SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
              +F  ++E    GC PD  T  +++ A   +G  ++ E+   E   +G+  +  + N 
Sbjct: 126 ---AFKMLLEMRRAGCKPDQITYTTLVKACVAAGQFDRAERLLGEMEELGIPPNAYSYNC 182

Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
           +     +   + K   ++  M++      +++Y+  I    +A  +++    F++M+ +G
Sbjct: 183 ILYGLAQKLQWGKATRLLQRMEEDGVEANLLSYSYCILACVRARRMKEASALFEEMRRKG 242

Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
           + PN     +++S Y+  G++ +   I++ +++  +  +   F+ +I A+  AG  +K  
Sbjct: 243 IVPNLFVMNTMMSGYAAKGMVDEAQGIMKLLQDMRIKANAMTFSSLIEAFINAGYADKAV 302

Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
           E+   M+E     D +    M++AY ++G  E A
Sbjct: 303 EVKRKMEELGVEVDMVVSTQMLKAYTSMGKVEEA 336



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 141/280 (50%), Gaps = 14/280 (5%)

Query: 13  ASLLFEVMLSDGL----KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
           A  LF  +   GL    +P+   +  +V+AY +   +++AF  + +M+  + CKPD  TY
Sbjct: 87  AQTLFSSLRGAGLCISLQPTGVSFNIMVNAYARRRKVEKAFKMLLEMRR-AGCKPDQITY 145

Query: 69  SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS-FSAMV 127
           + L+K+C    +FD  E++L EM  LGI  +A +YN I+  YG A+K +  +++     +
Sbjct: 146 TTLVKACVAAGQFDRAERLLGEMEELGIPPNAYSYNCIL--YGLAQKLQWGKATRLLQRM 203

Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
           E  G   ++ + +  I A   +  +++    + E    G+  ++  +N +   Y   GM 
Sbjct: 204 EEDGVEANLLSYSYCILACVRARRMKEASALFEEMRRKGIVPNLFVMNTMMSGYAAKGMV 263

Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
           D+ + +M  +Q        +T++ +IE F  AG+ +K  E  +KM+  G++ + +    +
Sbjct: 264 DEAQGIMKLLQDMRIKANAMTFSSLIEAFINAGYADKAVEVKRKMEELGVEVDMVVSTQM 323

Query: 248 VSAYSKAG----LIMKVDSILRQVEN--SDVILDTPFFNC 281
           + AY+  G     I K++ I+++  +  S    D+  F C
Sbjct: 324 LKAYTSMGKVEEAIEKLEEIVKEASSPVSSRTFDSVLFQC 363



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/294 (21%), Positives = 130/294 (44%), Gaps = 3/294 (1%)

Query: 47  EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106
           EAFS  +  +     +P V+ Y  LIK+  +  + +   + L  M   G   S    N +
Sbjct: 15  EAFSYFSSSQHPPSLRPSVHCYGTLIKAYGQLGQLEAAFETLNGMVKGGPAPSIRVINAL 74

Query: 107 IDGYGKAKKFEEMESSFSAMVESGGC---HPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163
           +    +A      ++ FS++  +G C    P   + N M++AY     +EK  K   E  
Sbjct: 75  LQACVRAGNLTAAQTLFSSLRGAGLCISLQPTGVSFNIMVNAYARRRKVEKAFKMLLEMR 134

Query: 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
             G K D  T   L K+   AG +D+   ++  M++    P   +YN ++    +     
Sbjct: 135 RAGCKPDQITYTTLVKACVAAGQFDRAERLLGEMEELGIPPNAYSYNCILYGLAQKLQWG 194

Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCII 283
           K     ++M+  G++ N ++Y   + A  +A  + +  ++  ++    ++ +    N ++
Sbjct: 195 KATRLLQRMEEDGVEANLLSYSYCILACVRARRMKEASALFEEMRRKGIVPNLFVMNTMM 254

Query: 284 SAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
           S Y   G V++   +   +++     + +TF+++I+A+   G  + A  ++ KM
Sbjct: 255 SGYAAKGMVDEAQGIMKLLQDMRIKANAMTFSSLIEAFINAGYADKAVEVKRKM 308



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 7/152 (4%)

Query: 6   KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCK 62
           + ++ ++AS LFE M   G+ P++ V   ++S Y   G++DEA      + DM+     K
Sbjct: 224 RARRMKEASALFEEMRRKGIVPNLFVMNTMMSGYAAKGMVDEAQGIMKLLQDMR----IK 279

Query: 63  PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
            +  T+S LI++       D   ++  +M  LG+E   V    ++  Y    K EE    
Sbjct: 280 ANAMTFSSLIEAFINAGYADKAVEVKRKMEELGVEVDMVVSTQMLKAYTSMGKVEEAIEK 339

Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
              +V+         T +S++      G+ E+
Sbjct: 340 LEEIVKEASSPVSSRTFDSVLFQCSKRGSKEE 371


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.134    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,977,644,800
Number of Sequences: 23463169
Number of extensions: 191091405
Number of successful extensions: 684225
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7721
Number of HSP's successfully gapped in prelim test: 4703
Number of HSP's that attempted gapping in prelim test: 488655
Number of HSP's gapped (non-prelim): 72463
length of query: 351
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 208
effective length of database: 9,003,962,200
effective search space: 1872824137600
effective search space used: 1872824137600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)