BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018743
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K95|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|A Chain A, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
pdb|1K94|B Chain B, Crystal Structure Of Des(1-52)grancalcin With Bound
Calcium
Length = 165
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 21/94 (22%)
Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
F+E+ ++ +A E N M SG +E E LMG + QTL
Sbjct: 62 FKELWAALNAWKE-----------NFMTVDQDGSGTVEHHE-LRQAIGLMGYRLSPQTLT 109
Query: 176 ILTKSYGRAG--MYD-------KMRSVMDFMQKR 200
+ K Y + G +D K+R++ DF +KR
Sbjct: 110 TIVKRYSKNGRIFFDDYVACCVKLRALTDFFRKR 143
>pdb|2A98|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Inositol 1,4,5- Trisphosphate 3-kinase C
Length = 259
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM------KSVSDCK 62
Q EQ SL E ++ D L+P V Y +V GQ+ F+ + D+ S+ DCK
Sbjct: 11 QCEQRSL--EQLMKDPLRPFVPAYYGMVLQDGQT------FNQMEDLLADFEGPSIMDCK 62
Query: 63 PDVYTY--SILIKSCTKFH-RFDLIEKILA 89
TY L+K+ + R D+ EK++A
Sbjct: 63 MGSRTYLEEELVKARERPRPRKDMYEKMVA 92
>pdb|1F4O|A Chain A, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4O|B Chain B, Crystal Structure Of Grancalcin With Bound Calcium
pdb|1F4Q|A Chain A, Crystal Structure Of Apo Grancalcin
pdb|1F4Q|B Chain B, Crystal Structure Of Apo Grancalcin
Length = 165
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 21/94 (22%)
Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
F+E+ ++ +A E N M SG +E E LMG + QTL
Sbjct: 62 FKELWAALNAWKE-----------NFMTVDQDGSGTVEHHE-LRQAIGLMGYRLSPQTLT 109
Query: 176 ILTKSYGRAG--MYD-------KMRSVMDFMQKR 200
+ K Y + G +D K+R++ DF +KR
Sbjct: 110 TIVKRYSKNGRIFFDDYVACCVKLRALTDFFKKR 143
>pdb|2Z9U|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9U|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase From Mesorhizobium Loti At 2.0 A
Resolution
pdb|2Z9V|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9V|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxamine
pdb|2Z9W|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9W|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxal
pdb|2Z9X|A Chain A, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
pdb|2Z9X|B Chain B, Crystal Structure Of Pyridoxamine-Pyruvate
Aminotransferase Complexed With Pyridoxyl-L-Alanine
Length = 392
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKS-VSDCKPDVY 66
+D ALVSA+G L+ +A S+ MK+ DCK D+Y
Sbjct: 152 PIDAIGALVSAHGAY-LIVDAVSSFGGMKTHPEDCKADIY 190
>pdb|2Y8K|A Chain A, Structure Of Ctgh5-Cbm6, An Arabinoxylan-Specific Xylanase
Length = 491
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 123 FSAMVESGG--CHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
FSA+VE+ G PD + YGN G + W N F
Sbjct: 295 FSALVENSGLSWTPDYGNWPAARGVYGNGGLARETATWINNF 336
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 213 IETFGKAGHIEKME---EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
+E G IEKM+ K KH + N+I S +S ++ ++++++EN
Sbjct: 28 VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN 87
Query: 270 SDVILDT 276
D + DT
Sbjct: 88 LDAVADT 94
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
N I K GH E+++EY K + RG PN LV+ S+ G
Sbjct: 43 NYYIIELDKHGHGEELQEYIKLVTGRGTVPN-----LLVNGVSRGG 83
>pdb|4GER|A Chain A, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
pdb|4GER|B Chain B, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
pdb|4B52|A Chain A, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
pdb|4B52|B Chain B, Crystal Structure Of Gentlyase, The Neutral
Metalloprotease Of Paenibacillus Polymyxa
Length = 304
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 25 LKPSVDVYTALVSAYGQSGLLDEAFSTI--NDMKS----VSDCKPDVYTYSI 70
L V YT+ + YG+SG L+EAFS + ND++ V D D+YT +I
Sbjct: 137 LTHGVTEYTSNLEYYGESGALNEAFSDVIGNDIQRKNWLVGD---DIYTPNI 185
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 213 IETFGKAGHIEKME---EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
+E G IEKM+ K KH + N+I S +S ++ ++++++EN
Sbjct: 29 VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN 88
Query: 270 SDVILDT 276
D + DT
Sbjct: 89 LDAVADT 95
>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila.
pdb|4EPP|B Chain B, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila
Length = 477
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
K Y +F L+ +K +Q +NI + + Y+ ++ +DF +K + +VI
Sbjct: 164 KIYKDFRLIYLKDLVQQINIRRQEKIKC-FYEYLKQALDFSEKE-------SKEVVIFQR 215
Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
G +E E + K+K +K +T L+ +
Sbjct: 216 INCGQLEDYENWVDKLKAIKLKNVQLTDDKLIEDF 250
>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor
Complex From Tetrahymena Thermophila
Length = 477
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
K Y +F L+ +K +Q +NI + + Y+ ++ +DF +K + +VI
Sbjct: 164 KIYKDFRLIYLKDLVQQINIRRQEKIKC-FYEYLKQALDFSEKE-------SKEVVIFQR 215
Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
G +E E + K+K +K +T L+ +
Sbjct: 216 INCGQLEDYENWVDKLKAIKLKNVQLTDDKLIEDF 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,708,956
Number of Sequences: 62578
Number of extensions: 377478
Number of successful extensions: 1106
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 11
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)