BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018743
(351 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 491 bits (1265), Expect = e-138, Method: Compositional matrix adjust.
Identities = 229/341 (67%), Positives = 281/341 (82%)
Query: 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
+LG CKQP+QASLLFEVMLS+GLKP++DVYT+L+S YG+S LLD+AFST+ MKSVSDCK
Sbjct: 103 VLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCK 162
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
PDV+T+++LI C K RFDL++ I+ EMSYLG+ CS VTYNTIIDGYGKA FEEMES
Sbjct: 163 PDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV 222
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
+ M+E G PD+ TLNS+I +YGN N+ KME WY+ F LMGV+ DI T NIL S+G
Sbjct: 223 LADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFG 282
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
+AGMY KM SVMDFM+KRFF T VTYNIVIETFGKAG IEKM++ F+KMK++G+KPNSI
Sbjct: 283 KAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSI 342
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
TYCSLV+AYSKAGL++K+DS+LRQ+ NSDV+LDTPFFNCII+AYGQAGD+ M EL++ M
Sbjct: 343 TYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQM 402
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
+ER C PD ITFATMI+ Y A G+ +A Q LE +MI+ EN
Sbjct: 403 EERKCKPDKITFATMIKTYTAHGIFDAVQELEKQMISSGEN 443
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 115/292 (39%), Gaps = 72/292 (24%)
Query: 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166
+D K +++ F+ + + P T + GN ++ + G
Sbjct: 65 LDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEG 124
Query: 167 VKADIQTLNILTKSYGRAGMYDK-------MRSVMDFMQKRFFFP--------------- 204
+K I L YG++ + DK M+SV D F F
Sbjct: 125 LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLV 184
Query: 205 --------------TVVTYNIVIETFGKAGHIE--------------------------- 223
+ VTYN +I+ +GKAG E
Sbjct: 185 KSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIG 244
Query: 224 ---------KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
KME ++ + + G++P+ T+ L+ ++ KAG+ K+ S++ +E L
Sbjct: 245 SYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSL 304
Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
T +N +I +G+AG +EKM ++F MK + P++IT+ +++ AY+ G+
Sbjct: 305 TTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGL 356
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 2/148 (1%)
Query: 193 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
+ + ++K+ ++ P TY + + G ++ F+ M G+KP Y SL+S Y
Sbjct: 80 IFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVY 139
Query: 252 SKAGLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
K+ L+ K S L +++ SD D F +IS + G + + + L M
Sbjct: 140 GKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCS 199
Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
+T+ T+I Y GM E +++ MI
Sbjct: 200 TVTYNTIIDGYGKAGMFEEMESVLADMI 227
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 317 bits (813), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 154/333 (46%), Positives = 224/333 (67%)
Query: 1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
+VMLGKCKQPE+A LF+ M+++G + +VYTALVSAY +SG D AF+ + MKS +
Sbjct: 157 IVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHN 216
Query: 61 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
C+PDV+TYSILIKS + FD ++ +L++M GI + +TYNT+ID YGKAK F EME
Sbjct: 217 CQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEME 276
Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
S+ M+ C PD +T+NS + A+G +G IE ME Y +F G++ +I+T NIL S
Sbjct: 277 STLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDS 336
Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
YG++G Y KM +VM++MQK + T+VTYN+VI+ FG+AG +++ME F+ M+ + P+
Sbjct: 337 YGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPS 396
Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
+T CSLV AY +A K+ +LR +ENSD+ LD FFNC++ AYG+ +M +
Sbjct: 397 CVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLE 456
Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
M+++ PD IT+ TM++AY GMT + L
Sbjct: 457 LMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 489
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 193 VMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
V + ++++ ++ P V Y +I GK EK E F++M + G N Y +LVSAY
Sbjct: 136 VFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAY 195
Query: 252 SKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
S++G ++L ++++S + D ++ +I ++ Q +K+ +L M+ + P+
Sbjct: 196 SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPN 255
Query: 311 NITFATMIQAYNALGM 326
IT+ T+I AY M
Sbjct: 256 TITYNTLIDAYGKAKM 271
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 300 bits (769), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 145/349 (41%), Positives = 223/349 (63%), Gaps = 7/349 (2%)
Query: 1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
+V+LGK QP +A LF+ ML +GL+P+V++YTAL++AY +S L+D+AFS ++ MKS
Sbjct: 131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190
Query: 61 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
C+PDV+TYS L+K+C +FDL++ + EM I + VT N ++ GYG+ +F++ME
Sbjct: 191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250
Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
S M+ S C PD++T+N ++S +GN G I+ ME WY +F G++ + +T NIL S
Sbjct: 251 KVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGS 310
Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
YG+ MYDKM SVM++M+K F T TYN +IE F G + ME F +M+ GMK +
Sbjct: 311 YGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKAD 370
Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
+ T+C L++ Y+ AGL KV S ++ ++ +T F+N +ISA +A D+ +M +++
Sbjct: 371 TKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYI 430
Query: 301 TMKERHCVPDNITFATMIQAYNALGMT-------EAAQNLENKMIAMKE 342
MKER CV D+ TF M++AY GM + Q L ++ +A KE
Sbjct: 431 RMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMDRTVATKE 479
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 3/320 (0%)
Query: 3 MLGKCKQP-EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61
+ GK P + + L E M SDG+ P Y L++ + L EA +MK+
Sbjct: 252 VFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAG-F 310
Query: 62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
D TY+ L+ K HR K+L EM G S VTYN++I Y + +E
Sbjct: 311 SYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAME 370
Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
+ M E G PD+FT +++S + +G +E + E G K +I T N K Y
Sbjct: 371 LKNQMAEKG-TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY 429
Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
G G + +M + D + P +VT+N ++ FG+ G ++ FK+MK G P
Sbjct: 430 GNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 489
Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
T+ +L+SAYS+ G + ++ R++ ++ V D +N +++A + G E+ ++
Sbjct: 490 ETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAE 549
Query: 302 MKERHCVPDNITFATMIQAY 321
M++ C P+ +T+ +++ AY
Sbjct: 550 MEDGRCKPNELTYCSLLHAY 569
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 157/338 (46%), Gaps = 12/338 (3%)
Query: 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
GK +P++A + M+ +G PS+ Y +L+SAY + G+LDEA N M KPD
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAE-KGTKPD 383
Query: 65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
V+TY+ L+ + + + I EM G + + T+N I YG KF EM F
Sbjct: 384 VFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD 443
Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
+ G PDI T N++++ +G +G ++ + E G + +T N L +Y R
Sbjct: 444 E-INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502
Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
G +++ +V M P + TYN V+ + G E+ E+ +M+ KPN +TY
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTY 562
Query: 245 CSLVSAYSKAGLIMKVDSILRQV-----ENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
CSL+ AY+ I + S+ +V E V+L T C + + + F
Sbjct: 563 CSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVC-----SKCDLLPEAERAF 617
Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
+KER PD T +M+ Y M A + + M
Sbjct: 618 SELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYM 655
Score = 147 bits (372), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 166/328 (50%), Gaps = 3/328 (0%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYS 69
+A +F+ M DG KP++ Y +++ +G+ G ++ S + MKS PD YTY+
Sbjct: 225 REAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKS-DGIAPDAYTYN 283
Query: 70 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
LI C + ++ EM G VTYN ++D YGK+ + +E + MV +
Sbjct: 284 TLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN 343
Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
G P I T NS+ISAY G +++ + N+ G K D+ T L + RAG +
Sbjct: 344 G-FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVES 402
Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
S+ + M+ P + T+N I+ +G G +M + F ++ G+ P+ +T+ +L++
Sbjct: 403 AMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLA 462
Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
+ + G+ +V + ++++ + + + FN +ISAY + G E+ ++ M + P
Sbjct: 463 VFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522
Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
D T+ T++ A GM E ++ + +M
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEM 550
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 163/337 (48%), Gaps = 3/337 (0%)
Query: 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
MLGK + A+ +F + DG V YT+L+SA+ SG EA + M+ CK
Sbjct: 182 MLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE-DGCK 240
Query: 63 PDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
P + TY++++ K ++ I ++ +M GI A TYNT+I + +E
Sbjct: 241 PTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQ 300
Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
F M +G + D T N+++ YG S ++ K NE L G I T N L +Y
Sbjct: 301 VFEEMKAAGFSY-DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAY 359
Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
R GM D+ + + M ++ P V TY ++ F +AG +E F++M++ G KPN
Sbjct: 360 ARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNI 419
Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
T+ + + Y G ++ I ++ + D +N +++ +GQ G ++ +F
Sbjct: 420 CTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKE 479
Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
MK VP+ TF T+I AY+ G E A + +M+
Sbjct: 480 MKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRML 516
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 158/331 (47%), Gaps = 2/331 (0%)
Query: 1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
+ + G+ + S +F+ M G P + + L+SAY + G ++A + M
Sbjct: 461 LAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAG- 519
Query: 61 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
PD+ TY+ ++ + + ++ EK+LAEM + + +TY +++ Y K+ M
Sbjct: 520 VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMH 579
Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
S + V SG P L +++ + + E+ ++E G DI TLN +
Sbjct: 580 S-LAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSI 638
Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
YGR M K V+D+M++R F P++ TYN ++ ++ K EE +++ +G+KP+
Sbjct: 639 YGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPD 698
Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
I+Y +++ AY + + I ++ NS ++ D +N I +Y E+ +
Sbjct: 699 IISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVR 758
Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
M + C P+ T+ +++ Y L + A+
Sbjct: 759 YMIKHGCRPNQNTYNSIVDGYCKLNRKDEAK 789
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 138/315 (43%), Gaps = 2/315 (0%)
Query: 24 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
GL P + + L++ +GQ+G+ E +MK P+ T++ LI + ++ F+
Sbjct: 449 GLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFV-PERETFNTLISAYSRCGSFEQ 507
Query: 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
+ M G+ TYNT++ + +E+ E + M E G C P+ T S++
Sbjct: 508 AMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM-EDGRCKPNELTYCSLL 566
Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
AY N I M E ++ L L + + + +++R F
Sbjct: 567 HAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFS 626
Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
P + T N ++ +G+ + K MK RG P+ TY SL+ +S++ K + I
Sbjct: 627 PDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEI 686
Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
LR++ + D +N +I AY + + +F M+ VPD IT+ T I +Y A
Sbjct: 687 LREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAA 746
Query: 324 LGMTEAAQNLENKMI 338
M E A + MI
Sbjct: 747 DSMFEEAIGVVRYMI 761
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 78/170 (45%), Gaps = 1/170 (0%)
Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYF 229
D + I+ G+ G ++ + +Q+ F V +Y +I F +G + F
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVF 231
Query: 230 KKMKHRGMKPNSITYCSLVSAYSKAGLIM-KVDSILRQVENSDVILDTPFFNCIISAYGQ 288
KKM+ G KP ITY +++ + K G K+ S++ ++++ + D +N +I+ +
Sbjct: 232 KKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKR 291
Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
++ ++F MK D +T+ ++ Y + A + N+M+
Sbjct: 292 GSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMV 341
Score = 38.1 bits (87), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
+ + + K+ ++ M NS+ ++S K G + ++ ++ LD +
Sbjct: 155 LRAFDWFMKQKDYQSMLDNSVV-AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTS 213
Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-----MTEAAQNLENK 336
+ISA+ +G + +F M+E C P IT+ ++ + +G +T + +++
Sbjct: 214 LISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSD 273
Query: 337 MIAMKENSGKKLIQC 351
IA + LI C
Sbjct: 274 GIAPDAYTYNTLITC 288
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 141 bits (356), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 182/372 (48%), Gaps = 44/372 (11%)
Query: 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
+L KC + +F+ M S G+ SV YTAL++AYG++G + + ++ MK+
Sbjct: 156 LLDKCLE------VFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKN-EKIS 208
Query: 63 PDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTII-------------- 107
P + TY+ +I +C + ++ + + AEM + GI+ VTYNT++
Sbjct: 209 PSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEM 268
Query: 108 ------DG---------------YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
DG +GK ++ E++ M SGG PDI + N ++ AY
Sbjct: 269 VFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMA-SGGSLPDITSYNVLLEAY 327
Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
SG+I++ +++ G + T ++L +G++G YD +R + M+ P
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387
Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
TYNI+IE FG+ G+ +++ F M ++P+ TY ++ A K GL IL+
Sbjct: 388 ATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQY 447
Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
+ +D++ + + +I A+GQA E+ F TM E P TF +++ ++ G+
Sbjct: 448 MTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGL 507
Query: 327 TEAAQNLENKMI 338
+ ++ + ++++
Sbjct: 508 VKESEAILSRLV 519
Score = 137 bits (346), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 43/345 (12%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA---FSTINDMKSVSDCKPDVYTYSILI 72
LF M +G++P + Y L+SA GL DEA F T+ND V PD+ TYS L+
Sbjct: 234 LFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIV----PDLTTYSHLV 289
Query: 73 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
++ K R + + +L EM+ G +YN +++ Y K+ +E F M ++ GC
Sbjct: 290 ETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM-QAAGC 348
Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG---------- 182
P+ T + +++ +G SG + + + + E D T NIL + +G
Sbjct: 349 TPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVT 408
Query: 183 -------------------------RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217
+ G+++ R ++ +M P+ Y VIE FG
Sbjct: 409 LFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFG 468
Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
+A E+ F M G P+ T+ SL+ ++++ GL+ + ++IL ++ +S + +
Sbjct: 469 QAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRD 528
Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322
FN I AY Q G E+ + ++ M++ C PD T ++ Y+
Sbjct: 529 TFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS 573
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 162/315 (51%), Gaps = 3/315 (0%)
Query: 26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
KP+ +YT ++S G+ GLLD+ ++M S + V++Y+ LI + + R++
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSR-SVFSYTALINAYGRNGRYETSL 196
Query: 86 KILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMIS 144
++L M I S +TYNT+I+ + +E + F+ M G PDI T N+++S
Sbjct: 197 ELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHE-GIQPDIVTYNTLLS 255
Query: 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204
A G ++ E + N G+ D+ T + L +++G+ +K+ ++ M P
Sbjct: 256 ACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLP 315
Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
+ +YN+++E + K+G I++ F +M+ G PN+ TY L++ + ++G V +
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375
Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324
++++S+ D +N +I +G+ G +++ LF M E + PD T+ +I A
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKG 435
Query: 325 GMTEAAQNLENKMIA 339
G+ E A+ + M A
Sbjct: 436 GLHEDARKILQYMTA 450
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 136/279 (48%), Gaps = 2/279 (0%)
Query: 61 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
CKP+ + Y+I+I + D ++ EM G+ S +Y +I+ YG+ ++E
Sbjct: 137 CKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSL 196
Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTK 179
M ++ P I T N++I+A G + E + + E G++ DI T N L
Sbjct: 197 ELLDRM-KNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLS 255
Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
+ G+ D+ V M P + TY+ ++ETFGK +EK+ + +M G P
Sbjct: 256 ACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLP 315
Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
+ +Y L+ AY+K+G I + + Q++ + + ++ +++ +GQ+G + + +LF
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375
Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
L MK + PD T+ +I+ + G + L + M+
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMV 414
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 153/340 (45%), Gaps = 5/340 (1%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
GK ++ E+ L M S G P + Y L+ AY +SG + EA + M++ C P
Sbjct: 292 FGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAG-CTP 350
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
+ TYS+L+ + R+D + ++ EM + A TYN +I+ +G+ F+E+ + F
Sbjct: 351 NANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLF 410
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
MVE PD+ T +I A G G E K + + + +++G+
Sbjct: 411 HDMVEEN-IEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQ 469
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
A +Y++ + M + P++ T++ ++ +F + G +++ E ++ G+ N T
Sbjct: 470 AALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDT 529
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
+ + + AY + G + +E S D ++S Y A V++ E F MK
Sbjct: 530 FNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMK 589
Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
+P + + M+ Y G TE ++ + M N
Sbjct: 590 ASDILPSIMCYCMMLAVY---GKTERWDDVNELLEEMLSN 626
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 1/218 (0%)
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
F M C P+ MIS G G ++K + ++E GV + + L +YG
Sbjct: 128 FKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYG 187
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNS 241
R G Y+ ++D M+ P+++TYN VI + G E + F +M+H G++P+
Sbjct: 188 RNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDI 247
Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
+TY +L+SA + GL + + + R + + ++ D ++ ++ +G+ +EK+ +L
Sbjct: 248 VTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGE 307
Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
M +PD ++ +++AY G + A + ++M A
Sbjct: 308 MASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQA 345
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 127/270 (47%), Gaps = 2/270 (0%)
Query: 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
+ G+ + + LF M S P Y L+ +G+ G E + +DM + +
Sbjct: 361 LFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVE-ENIE 419
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
PD+ TY +I +C K + KIL M+ I S+ Y +I+ +G+A +EE +
Sbjct: 420 PDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVA 479
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
F+ M E G +P I T +S++ ++ G +++ E + G+ + T N ++Y
Sbjct: 480 FNTMHEVG-SNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYK 538
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
+ G +++ M+K P T V+ + A +++ E F++MK + P+ +
Sbjct: 539 QGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIM 598
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
YC +++ Y K V+ +L ++ ++ V
Sbjct: 599 CYCMMLAVYGKTERWDDVNELLEEMLSNRV 628
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171
KAK + + + S VE G D+ +L + +S+ G+I + ++ K +
Sbjct: 52 KAKTKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRGSIARC------LDIFKNKLSL 105
Query: 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFK 230
++ K + G + + + +MQ++ + P Y I+I G+ G ++K E F
Sbjct: 106 NDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFD 165
Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
+M +G+ + +Y +L++AY + G +L +++N + +N +I+A + G
Sbjct: 166 EMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGG 225
Query: 291 -DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
D E + LF M+ PD +T+ T++ A G+ + A+
Sbjct: 226 LDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAE 267
Score = 35.0 bits (79), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/172 (18%), Positives = 68/172 (39%), Gaps = 6/172 (3%)
Query: 17 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
FE M + + PS+ Y +++ YG++ D+ + +M S ++
Sbjct: 585 FEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDYD 644
Query: 77 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI 136
+ ++E +L +++ G YN ++D + E + + G P++
Sbjct: 645 DDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRG-LFPEL 703
Query: 137 FTLNSMISAY-----GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
F N ++ + G + W N+ N M +K D+ L ++ G+
Sbjct: 704 FRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLKGDLPQLAVVVSVRGQ 755
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 96/345 (27%), Positives = 165/345 (47%), Gaps = 37/345 (10%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
+ ++L +++ S G+ P V Y +L+ Y + GL+ A ++DM++ CKP+VY+Y+I
Sbjct: 371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRN-KGCKPNVYSYTI 429
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
L+ K + D +L EMS G++ + V +N +I + K + E F M G
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489
Query: 131 GCHPDIFTLNSMIS-----------------------------------AYGNSGNIEKM 155
C PD++T NS+IS A+ G I++
Sbjct: 490 -CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 548
Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
K NE G D T N L K RAG DK RS+ + M + P+ ++ NI+I
Sbjct: 549 RKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608
Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
++G +E+ E+ K+M RG P+ +T+ SL++ +AG I ++ R+++ + D
Sbjct: 609 LCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 668
Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
T FN ++S + G V L E VP++ T++ ++Q+
Sbjct: 669 TVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQS 713
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 157/335 (46%), Gaps = 5/335 (1%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L KC + +A L E M G P + + ++ + ++EA +N M + P
Sbjct: 262 LSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML-IRGFAP 320
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
D TY L+ K R D + + + I V +NT+I G+ + ++ ++
Sbjct: 321 DDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEI----VIFNTLIHGFVTHGRLDDAKAVL 376
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
S MV S G PD+ T NS+I Y G + + ++ G K ++ + IL + +
Sbjct: 377 SDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCK 436
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
G D+ +V++ M P V +N +I F K I + E F++M +G KP+ T
Sbjct: 437 LGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYT 496
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
+ SL+S + I +LR + + V+ +T +N +I+A+ + G++++ +L M
Sbjct: 497 FNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMV 556
Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
+ D IT+ ++I+ G + A++L KM+
Sbjct: 557 FQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKML 591
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 152/336 (45%), Gaps = 9/336 (2%)
Query: 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
G C + A+ +F MLS + P++ + ++ A+ +D A S + DM C P+
Sbjct: 195 GNCHK--VAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTK-HGCVPN 251
Query: 65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
Y LI S +K +R + ++L EM +G A T+N +I G K + E +
Sbjct: 252 SVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVN 311
Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
M+ G PD T +++ G ++ + + K +I N L +
Sbjct: 312 RMLIRGFA-PDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGFVTH 366
Query: 185 GMYDKMRSVM-DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
G D ++V+ D + P V TYN +I + K G + E M+++G KPN +
Sbjct: 367 GRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYS 426
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
Y LV + K G I + ++L ++ + +T FNC+ISA+ + + + E+F M
Sbjct: 427 YTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMP 486
Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
+ C PD TF ++I + + A L MI+
Sbjct: 487 RKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 522
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/328 (18%), Positives = 144/328 (43%), Gaps = 8/328 (2%)
Query: 20 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
M +G+ ++ +++ Y ++G + + +M++V C+P +Y+++++ +
Sbjct: 137 MKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGN 196
Query: 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
+ + +M I + T+ ++ + + + S M + G C P+
Sbjct: 197 CHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHG-CVPNSVIY 255
Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
++I + + + + E LMG D +T N + + ++ +++ M
Sbjct: 256 QTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLI 315
Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
R F P +TY ++ K G ++ ++ F +R KP + + +L+ + G +
Sbjct: 316 RGFAPDDITYGYLMNGLCKIGRVDAAKDLF----YRIPKPEIVIFNTLIHGFVTHGRLDD 371
Query: 260 VDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
++L + S ++ D +N +I Y + G V E+ M+ + C P+ ++ ++
Sbjct: 372 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILV 431
Query: 319 QAYNALGMTEAAQNLENKMIA--MKENS 344
+ LG + A N+ N+M A +K N+
Sbjct: 432 DGFCKLGKIDEAYNVLNEMSADGLKPNT 459
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 35/267 (13%)
Query: 67 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
Y +LI F I+++L +M GI + +I+ Y KA + M
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 172
Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
C P + N ++ SGN K V A++
Sbjct: 173 RNVYSCEPTFKSYNVVLEIL-VSGNCHK------------VAANV--------------F 205
Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
YD M R PT+ T+ +V++ F I+ + M G PNS+ Y +
Sbjct: 206 YD--------MLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQT 257
Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
L+ + SK + + +L ++ + D FN +I + + + ++ M R
Sbjct: 258 LIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRG 317
Query: 307 CVPDNITFATMIQAYNALGMTEAAQNL 333
PD+IT+ ++ +G +AA++L
Sbjct: 318 FAPDDITYGYLMNGLCKIGRVDAAKDL 344
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 1/198 (0%)
Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201
+I G +G + +++ + G+ + + Y +AG + +M M+ +
Sbjct: 117 LIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVY 176
Query: 202 FF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
PT +YN+V+E + F M R + P T+ ++ A+ I
Sbjct: 177 SCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSA 236
Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
S+LR + + ++ + +I + + V + +L M CVPD TF +I
Sbjct: 237 LSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG 296
Query: 321 YNALGMTEAAQNLENKMI 338
A + N+M+
Sbjct: 297 LCKFDRINEAAKMVNRML 314
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 141 bits (355), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 163/316 (51%), Gaps = 6/316 (1%)
Query: 11 EQASLLFEVMLSDGLKP---SVDVYTALVSAY-GQSGLLDEAFSTINDMKSVSDCKPDVY 66
E+A ++ M + + P V VY A + + G +EA MK CKP
Sbjct: 207 ERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKR-DRCKPTTE 265
Query: 67 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
TY+++I K + + K+ EM + + TY +++ + + E+ E F +
Sbjct: 266 TYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQL 325
Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
E G PD++ N+++ +Y +G + ++ MG + D + NI+ +YGRAG+
Sbjct: 326 QEDG-LEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGL 384
Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
+ +V + M++ PT+ ++ +++ + KA + K E K+M G++P++ S
Sbjct: 385 HSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNS 444
Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
+++ Y + G K++ IL ++EN D +N +I+ YG+AG +E++ ELF+ +KE++
Sbjct: 445 MLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKN 504
Query: 307 CVPDNITFATMIQAYN 322
PD +T+ + I AY+
Sbjct: 505 FRPDVVTWTSRIGAYS 520
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 155/300 (51%), Gaps = 2/300 (0%)
Query: 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
+ GK + + L+ M S KP++ YTALV+A+ + GL ++A ++ +
Sbjct: 273 LYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE-DGLE 331
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
PDVY Y+ L++S ++ +I + M ++G E +YN ++D YG+A + E+
Sbjct: 332 PDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 391
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
F M + G P + + ++SAY + ++ K E E + GV+ D LN + YG
Sbjct: 392 FEEM-KRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYG 450
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
R G + KM ++ M+ + TYNI+I +GKAG +E++EE F ++K + +P+ +
Sbjct: 451 RLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVV 510
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
T+ S + AYS+ L +K + ++ +S D ++SA VE++ + TM
Sbjct: 511 TWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTM 570
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 141/306 (46%), Gaps = 27/306 (8%)
Query: 46 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI-EKILAEMSYLGIECSAVTYN 104
D+ + + S D+ S+ ++ K+ L+ E IL + S+ + + +N
Sbjct: 103 DKVADVLGALPSTHASWDDLINVSVQLRLNKKWDSIILVCEWILRKSSF---QPDVICFN 159
Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
+ID YG+ +++E ES + ++ES P T +I AY +G IE+ E
Sbjct: 160 LLIDAYGQKFQYKEAESLYVQLLESRYV-PTEDTYALLIKAYCMAGLIERAEV------- 211
Query: 165 MGVKADIQTLNILTKSYG-------------RAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
V ++Q ++ K+ G R G ++ V M++ PT TYN+
Sbjct: 212 --VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNL 269
Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
+I +GKA + + +M+ KPN TY +LV+A+++ GL K + I Q++
Sbjct: 270 MINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDG 329
Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
+ D +N ++ +Y +AG E+F M+ C PD ++ M+ AY G+ A+
Sbjct: 330 LEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAE 389
Query: 332 NLENKM 337
+ +M
Sbjct: 390 AVFEEM 395
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 155/325 (47%), Gaps = 5/325 (1%)
Query: 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY----GQSGLLDEAFSTINDMKSV 58
++GK Q A LF M + G +P VY AL++A+ ++ L++ ++ MK +
Sbjct: 142 VMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGI 201
Query: 59 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
C+P+V TY+IL+++ + + D + + ++ + T+N ++D YGK +E
Sbjct: 202 ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKE 261
Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
ME+ + M S C PDI T N +I +YG EKME+ + K + T N +
Sbjct: 262 MEAVLTRM-RSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMI 320
Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
+YG+A M DK V M + P+ +TY +I +G G + + E F+++
Sbjct: 321 INYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRV 380
Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
+ T +++ Y + GL ++ D + V D + + AY +A E++ L
Sbjct: 381 LKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQIL 440
Query: 299 FLTMKERHCVPDNITFATMIQAYNA 323
M++ VP+ F ++ + +
Sbjct: 441 MKKMEKDGIVPNKRFFLEALEVFGS 465
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 151/318 (47%), Gaps = 11/318 (3%)
Query: 27 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
P VY+ L+S G+ G A ++MK+ S C+PD Y+ LI + H D +
Sbjct: 131 PDNGVYSKLISVMGKKGQTRMAMWLFSEMKN-SGCRPDASVYNALITA--HLHTRDKAKA 187
Query: 87 ILAEMSYL----GIE-C--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
+ YL GIE C + VTYN ++ + ++ K +++ + F + + PD++T
Sbjct: 188 LEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDL-DMSPVSPDVYTF 246
Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
N ++ AYG +G I++ME K DI T N+L SYG+ ++KM + +
Sbjct: 247 NGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMR 306
Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
PT+ T+N +I +GKA I+K E FKKM P+ ITY ++ Y G + +
Sbjct: 307 SKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSR 366
Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
I +V SD +L N ++ Y + G + +LF PD T+ + +
Sbjct: 367 AREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYK 426
Query: 320 AYNALGMTEAAQNLENKM 337
AY M E Q L KM
Sbjct: 427 AYTKADMKEQVQILMKKM 444
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 41/187 (21%)
Query: 176 ILTKSYGRAGMYDKMRSVMDFMQK-RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
+L + G++ + + V +MQK R++ P Y+ +I GK G F +MK+
Sbjct: 102 LLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKN 161
Query: 235 RGMK----------------------------------------PNSITYCSLVSAYSKA 254
G + PN +TY L+ A++++
Sbjct: 162 SGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQS 221
Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
G + +V+++ + ++ S V D FN ++ AYG+ G +++M + M+ C PD ITF
Sbjct: 222 GKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITF 281
Query: 315 ATMIQAY 321
+I +Y
Sbjct: 282 NVLIDSY 288
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 164/359 (45%), Gaps = 39/359 (10%)
Query: 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
+ KQ + A LF+ M L P Y+ L++++G+ G+ D A S + M+ D+
Sbjct: 167 RAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQ-DRVSGDL 225
Query: 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
YS LI+ + + I + + GI V YN++I+ YGKAK F E
Sbjct: 226 VLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKE 285
Query: 126 MVESG----------------------------------GCHPDIFTLNSMISAYGNSGN 151
M E+G C D+ T N MI YG
Sbjct: 286 MNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDM 345
Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
+++ ++ + M ++ ++ + N + + YG A ++ + + MQ++ VVTYN
Sbjct: 346 VKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNT 405
Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271
+I+ +GK EK ++M+ RG++PN+ITY +++S + KAG + + ++ +++ +S
Sbjct: 406 MIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSG 465
Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
V +D + +I AY + G + L +K +PDNI T I G TE A
Sbjct: 466 VEIDQVLYQTMIVAYERVGLMGHAKRLLHELK----LPDNIPRETAITILAKAGRTEEA 520
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 158/356 (44%), Gaps = 39/356 (10%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
+F + G+ P + Y ++++ YG++ L EA I +M + P+ +YS L+
Sbjct: 247 IFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNE-AGVLPNTVSYSTLLSVY 305
Query: 76 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
+ H+F + AEM + T N +ID YG+ +E + F ++ P+
Sbjct: 306 VENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSL-RKMDIEPN 364
Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYDKMRS 192
+ + N+++ YG + E + + F LM ++ ++ T N + K YG+ ++K +
Sbjct: 365 VVSYNTILRVYGEA---ELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATN 421
Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
++ MQ R P +TY+ +I +GKAG +++ F+K++ G++ + + Y +++ AY
Sbjct: 422 LVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYE 481
Query: 253 KAGLIMKVDSIL-------------------------------RQVENSDVILDTPFFNC 281
+ GL+ +L RQ S + D F C
Sbjct: 482 RVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGC 541
Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
+I+ Y + + E+F M+ PD+ A ++ AY E A + +M
Sbjct: 542 MINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREM 597
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 143/311 (45%), Gaps = 2/311 (0%)
Query: 27 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
PSV Y ++ ++ D A ++M+ + PD YTYS LI S K FD
Sbjct: 153 PSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRA-LAPDRYTYSTLITSFGKEGMFDSALS 211
Query: 87 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
L +M + V Y+ +I+ + + + S FS + SG PD+ NSMI+ Y
Sbjct: 212 WLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSG-ITPDLVAYNSMINVY 270
Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
G + + E N GV + + + L Y + + SV M++ +
Sbjct: 271 GKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDL 330
Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
T NI+I+ +G+ +++ + F ++ ++PN ++Y +++ Y +A L + + R
Sbjct: 331 TTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRL 390
Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
++ D+ + +N +I YG+ + EK L M+ R P+ IT++T+I + G
Sbjct: 391 MQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGK 450
Query: 327 TEAAQNLENKM 337
+ A L K+
Sbjct: 451 LDRAATLFQKL 461
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 144/334 (43%), Gaps = 37/334 (11%)
Query: 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
G+ ++A LF + ++P+V Y ++ YG++ L EA M+ D + +
Sbjct: 341 GQLDMVKEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQR-KDIEQN 399
Query: 65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
V TY+ +IK K + ++ EM GIE +A+TY+TII +GKA K + + F
Sbjct: 400 VVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQ 459
Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL-------------------- 164
+ S G D +MI AY G + ++ +E L
Sbjct: 460 KL-RSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAKAGRTE 518
Query: 165 -----------MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
G DI + Y R Y + V + M+ +FP +V+
Sbjct: 519 EATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVL 578
Query: 214 ETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
+GK EK + +++M+ G + P+ + + ++S YS V+S+ +++E SD
Sbjct: 579 NAYGKQREFEKADTVYREMQEEGCVFPDEVHF-QMLSLYSSKKDFEMVESLFQRLE-SDP 636
Query: 273 ILDTPFFNCIISA-YGQAGDVEKMGELFLTMKER 305
+++ + +++A Y +A + + M+ER
Sbjct: 637 NVNSKELHLVVAALYERADKLNDASRVMNRMRER 670
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 83/178 (46%), Gaps = 2/178 (1%)
Query: 162 FNLMGVKADIQ-TLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKA 219
F+L+ D Q ++ + R + + +++D++ + + P+V YN+V+ +A
Sbjct: 109 FSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRA 168
Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
+ F +M+ R + P+ TY +L++++ K G+ S L+++E V D +
Sbjct: 169 KQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLY 228
Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
+ +I + D K +F +K PD + + +MI Y + A+ L +M
Sbjct: 229 SNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEM 286
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/361 (26%), Positives = 167/361 (46%), Gaps = 34/361 (9%)
Query: 13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-------LLDEAF-------------STI 52
A +FE M SDG+ P+ + LVS++ + G LL ++F +T+
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTL 181
Query: 53 NDMKSVSD-------------CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 99
+ V D C D T++ILI+ + + ++L MS G E
Sbjct: 182 VKLDRVEDAMKLFDEHLRFQSCN-DTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPD 240
Query: 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159
VTYNT+I G+ K+ + + F + C PD+ T SMIS Y +G + +
Sbjct: 241 IVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLL 300
Query: 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219
++ +G+ T N+L Y +AG + M FP VVT+ +I+ + +
Sbjct: 301 DDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRV 360
Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
G + + +++M RGM PN+ TY L++A ++K +L Q+ + D+I +
Sbjct: 361 GQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMY 420
Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
N +I + +AG V + + M+++ C PD ITF +I + G A ++ +KM+A
Sbjct: 421 NPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVA 480
Query: 340 M 340
+
Sbjct: 481 I 481
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 139/336 (41%), Gaps = 38/336 (11%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
+ E+A L VM G +P + Y L+ + +S L++A D+KS S C PDV TY
Sbjct: 221 KAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTY 280
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
+ +I K + +L +M LGI + VT+N ++DGY KA + E M+
Sbjct: 281 TSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMI- 339
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
S GC PD+ T S+I Y R G
Sbjct: 340 SFGCFPDVVTFTSLIDG-----------------------------------YCRVGQVS 364
Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
+ + + M R FP TY+I+I + K E ++ + + P Y ++
Sbjct: 365 QGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVI 424
Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
+ KAG + + + I+ ++E D F +I + G + + +F M C
Sbjct: 425 DGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCS 484
Query: 309 PDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
PD IT ++++ GM + A +L IA K S
Sbjct: 485 PDKITVSSLLSCLLKAGMAKEAYHLNQ--IARKGQS 518
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 33/147 (22%)
Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI---------- 257
TYN++ + KAG + + F+ MK G+ PN+ LVS++++ G +
Sbjct: 105 TYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQS 164
Query: 258 -------MKVDSILRQVENSDVIL----------------DTPFFNCIISAYGQAGDVEK 294
M V+S+L + D + DT FN +I G EK
Sbjct: 165 FEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEK 224
Query: 295 MGELFLTMKERHCVPDNITFATMIQAY 321
EL M C PD +T+ T+IQ +
Sbjct: 225 ALELLGVMSGFGCEPDIVTYNTLIQGF 251
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 157/328 (47%), Gaps = 38/328 (11%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
LG+ + A +FE + G +V ++AL+SAYG+SGL +EA S N MK
Sbjct: 243 LGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE------ 296
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESS 122
G+ + VTYN +ID GK +F+++
Sbjct: 297 ------------------------------YGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
F M + G PD T NS+++ G E ++E ++ D+ + N L +
Sbjct: 327 FDEM-QRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAIC 385
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
+ G D ++ M + P VV+Y+ VI+ F KAG ++ F +M++ G+ + +
Sbjct: 386 KGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRV 445
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
+Y +L+S Y+K G + ILR++ + + D +N ++ YG+ G +++ ++F M
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM 505
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAA 330
K H +P+ +T++T+I Y+ G+ + A
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEA 533
Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 154/284 (54%), Gaps = 2/284 (0%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
+Q + F+ M +G++P + +L++ + GL + A + ++M + + DV++Y+
Sbjct: 321 KQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTN-RRIEQDVFSYNT 379
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
L+ + K + DL +ILA+M I + V+Y+T+IDG+ KA +F+E + F M
Sbjct: 380 LLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEM-RYL 438
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
G D + N+++S Y G E+ E +G+K D+ T N L YG+ G YD++
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEV 498
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
+ V M++ P ++TY+ +I+ + K G ++ E F++ K G++ + + Y +L+ A
Sbjct: 499 KKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDA 558
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
K GL+ S++ ++ + + +N II A+G++ +++
Sbjct: 559 LCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDR 602
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 61/301 (20%)
Query: 12 QASLLFEVMLSDGLK---PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
Q L FE++ +K P+V Y+ ++ + ++G DEA + +M+ + D +Y
Sbjct: 389 QMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLG-IALDRVSY 447
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
+ L+ TK R + IL EM+ +GI+ VTYN ++ GYGK K++E++ F+ M
Sbjct: 448 NTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKR 507
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
P++ T +++I Y G ++ + + EF G++AD+ + L + + G+
Sbjct: 508 EH-VLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVG 566
Query: 189 KMRSVMDFMQKRFFFPTVVTY--------------------------------------- 209
S++D M K P VVTY
Sbjct: 567 SAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETE 626
Query: 210 -NIVIETFGKAG----------------HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
N VI+ FG+ + + E F+KM +KPN +T+ ++++A S
Sbjct: 627 GNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACS 686
Query: 253 K 253
+
Sbjct: 687 R 687
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 156/316 (49%), Gaps = 2/316 (0%)
Query: 24 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
G+ P + Y L+SAY GL++EAF +N M P VYTY+ +I K +++
Sbjct: 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPG-KGFSPGVYTYNTVINGLCKHGKYER 323
Query: 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
+++ AEM G+ + TY +++ K E E FS M S PD+ +SM+
Sbjct: 324 AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDM-RSRDVVPDLVCFSSMM 382
Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
S + SGN++K ++N G+ D IL + Y R GM ++ + M ++
Sbjct: 383 SLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCA 442
Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
VVTYN ++ K + + ++ F +M R + P+S T L+ + K G + +
Sbjct: 443 MDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMEL 502
Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
++++ + LD +N ++ +G+ GD++ E++ M + +P I+++ ++ A +
Sbjct: 503 FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCS 562
Query: 324 LGMTEAAQNLENKMIA 339
G A + ++MI+
Sbjct: 563 KGHLAEAFRVWDEMIS 578
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 150/310 (48%), Gaps = 4/310 (1%)
Query: 30 DVYTALVSAYGQSGLLDEAFSTINDMKSV-SDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88
D + L+ +SG+ +N + S S+C + + +LI++ + + +
Sbjct: 131 DAQSCLLRMIRRSGV--SRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAF 188
Query: 89 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
+ G S N +I + E + + SG +++TLN M++A
Sbjct: 189 TLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSG-VGINVYTLNIMVNALCK 247
Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
G +EK+ + ++ GV DI T N L +Y G+ ++ +M+ M + F P V T
Sbjct: 248 DGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYT 307
Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
YN VI K G E+ +E F +M G+ P+S TY SL+ K G +++ + + +
Sbjct: 308 YNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMR 367
Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTE 328
+ DV+ D F+ ++S + ++G+++K F ++KE +PDN+ + +IQ Y GM
Sbjct: 368 SRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMIS 427
Query: 329 AAQNLENKMI 338
A NL N+M+
Sbjct: 428 VAMNLRNEML 437
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 162/354 (45%), Gaps = 6/354 (1%)
Query: 2 VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
+++ CK+ + + +F M S + P + +++++S + +SG LD+A N +K +
Sbjct: 346 LLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE-A 404
Query: 60 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
PD Y+ILI+ + + + EM G VTYNTI+ G K K E
Sbjct: 405 GLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEA 464
Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
+ F+ M E PD +TL +I + GN++ + + + ++ D+ T N L
Sbjct: 465 DKLFNEMTERA-LFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLD 523
Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
+G+ G D + + M + PT ++Y+I++ GH+ + + +M + +KP
Sbjct: 524 GFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKP 583
Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
+ S++ Y ++G +S L ++ + + D +N +I + + ++ K L
Sbjct: 584 TVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLV 643
Query: 300 LTMKERH--CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351
M+E VPD T+ +++ + + A+ + KMI N + C
Sbjct: 644 KKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTC 697
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 154/332 (46%), Gaps = 2/332 (0%)
Query: 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
+ ++ +A F ++ S G S+D AL+ + + G ++ A+ ++ S S +V
Sbjct: 177 QARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI-SRSGVGINV 235
Query: 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
YT +I++ + K + + + L+++ G+ VTYNT+I Y EE +A
Sbjct: 236 YTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNA 295
Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
M G P ++T N++I+ G E+ ++ + E G+ D T L + G
Sbjct: 296 M-PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKG 354
Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
+ V M+ R P +V ++ ++ F ++G+++K YF +K G+ P+++ Y
Sbjct: 355 DVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 414
Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
L+ Y + G+I ++ ++ +D +N I+ + + + +LF M ER
Sbjct: 415 ILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 474
Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
PD+ T +I + LG + A L KM
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKM 506
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 6/323 (1%)
Query: 2 VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
V+ G CK E+A +F ML GL P Y +L+ + G + E +DM+S
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRS-R 369
Query: 60 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
D PD+ +S ++ T+ D + G+ V Y +I GY +
Sbjct: 370 DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVA 429
Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
+ + M++ G C D+ T N+++ + + +K +NE + D TL IL
Sbjct: 430 MNLRNEMLQQG-CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILID 488
Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
+ + G + M+++ VVTYN +++ FGK G I+ +E + M + + P
Sbjct: 489 GHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILP 548
Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
I+Y LV+A G + + + ++ + ++ N +I Y ++G+ GE F
Sbjct: 549 TPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASD-GESF 607
Query: 300 L-TMKERHCVPDNITFATMIQAY 321
L M VPD I++ T+I +
Sbjct: 608 LEKMISEGFVPDCISYNTLIYGF 630
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 133/294 (45%), Gaps = 4/294 (1%)
Query: 20 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
ML G V Y ++ + +L EA N+M + PD YT +ILI K
Sbjct: 436 MLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERA-LFPDSYTLTILIDGHCKLG 494
Query: 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
++ +M I VTYNT++DG+GK + + ++ MV S P +
Sbjct: 495 NLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMV-SKEILPTPISY 553
Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
+ +++A + G++ + + ++E +K + N + K Y R+G S ++ M
Sbjct: 554 SILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMIS 613
Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR--GMKPNSITYCSLVSAYSKAGLI 257
F P ++YN +I F + ++ K KKM+ G+ P+ TY S++ + + +
Sbjct: 614 EGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQM 673
Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
+ + +LR++ V D + C+I+ + ++ + + M +R PD+
Sbjct: 674 KEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 6/254 (2%)
Query: 2 VMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
++ G CK+ +A LF M L P T L+ + + G L A MK
Sbjct: 451 ILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKE-K 509
Query: 60 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
+ DV TY+ L+ K D ++I A+M I + ++Y+ +++ E
Sbjct: 510 RIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEA 569
Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
+ M+ S P + NSMI Y SGN E + + G D + N L
Sbjct: 570 FRVWDEMI-SKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIY 628
Query: 180 SYGRAGMYDKMRSVMDFMQKR--FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
+ R K ++ M++ P V TYN ++ F + +++ E +KM RG+
Sbjct: 629 GFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGV 688
Query: 238 KPNSITYCSLVSAY 251
P+ TY +++ +
Sbjct: 689 NPDRSTYTCMINGF 702
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 8/205 (3%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
GK + A ++ M+S + P+ Y+ LV+A G L EAF ++M S + KP
Sbjct: 525 FGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMIS-KNIKP 583
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
V + +IK + E L +M G ++YNT+I G+ + E M +F
Sbjct: 584 TVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVRE---ENMSKAF 640
Query: 124 SAMV----ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
+ E GG PD+FT NS++ + +++ E + GV D T +
Sbjct: 641 GLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMIN 700
Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFP 204
+ + + D M +R F P
Sbjct: 701 GFVSQDNLTEAFRIHDEMLQRGFSP 725
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS-VSDCKPDVYTYSILIKS 74
E M+S+G P Y L+ + + + +AF + M+ PDV+TY+ ++
Sbjct: 607 FLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHG 666
Query: 75 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP 134
+ ++ E +L +M G+ TY +I+G+ E M++ G
Sbjct: 667 FCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
Query: 135 DIF 137
D F
Sbjct: 727 DKF 729
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 157/333 (47%), Gaps = 8/333 (2%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
+P++A +F ++ +G KPS+ YT LV+A + S I+ ++ + KPD +
Sbjct: 334 RPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEK-NGLKPDTILF 392
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
+ +I + ++ D KI +M G + +A T+NT+I GYGK K EE M+
Sbjct: 393 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLR 452
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
P+ T N ++ A+ N IE+ + GVK D+ T N L K+Y R G
Sbjct: 453 DEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIG--- 509
Query: 189 KMRSVMDFMQKRFFF----PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
+ D + R P V T ++ + + G +E+ +F +MK G+ PN +
Sbjct: 510 STCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVF 569
Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
SL+ + + V ++ +E V D F+ +++A+ GD+++ E++ M E
Sbjct: 570 NSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLE 629
Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
PD F+ + + Y G E A+ + N+M
Sbjct: 630 GGIDPDIHAFSILAKGYARAGEPEKAEQILNQM 662
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 163/330 (49%), Gaps = 9/330 (2%)
Query: 5 GKCKQPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
GK + E++S L ++ML D L+P+ LV A+ ++EA++ + M+S KP
Sbjct: 435 GKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYG-VKP 493
Query: 64 DVYTYSILIKSCTKFHRFDLIEK-ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
DV T++ L K+ + E I+ M + ++ + T TI++GY + K EE
Sbjct: 494 DVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRF 553
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
F M E G HP++F NS+I + N +++ + + + GVK D+ T + L ++
Sbjct: 554 FYRMKEL-GVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWS 612
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
G + + M + P + ++I+ + + +AG EK E+ +M+ G++PN +
Sbjct: 613 SVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVV 672
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAGDVEKMGELF 299
Y ++S + AG + K + +++ ++ +P + +I +G+A K EL
Sbjct: 673 IYTQIISGWCSAGEMKKAMQVYKKM--CGIVGLSPNLTTYETLIWGFGEAKQPWKAEELL 730
Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEA 329
M+ ++ VP T + + ++G++ +
Sbjct: 731 KDMEGKNVVPTRKTMQLIADGWKSIGVSNS 760
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 157/344 (45%), Gaps = 15/344 (4%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
+QA +FE M G KP+ + L+ YG+ G L+E+ ++ M +P+ T +I
Sbjct: 406 DQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNI 465
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
L+++ + + I+ +M G++ VT+NT+ Y + E +
Sbjct: 466 LVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHN 525
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
P++ T ++++ Y G +E+ +++ +GV ++ N L K + D +
Sbjct: 526 KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGV 585
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
V+D M++ P VVT++ ++ + G +++ EE + M G+ P+ + L
Sbjct: 586 GEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKG 645
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--- 307
Y++AG K + IL Q+ V + + IIS + AG+++K +++ M C
Sbjct: 646 YARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM----CGIV 701
Query: 308 --VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
P+ T+ T+I + A+ L +K+ GK ++
Sbjct: 702 GLSPNLTTYETLIWGFGEAKQPWKAEEL------LKDMEGKNVV 739
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 66/119 (55%)
Query: 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
G ++ F + G KP+ ITY +LV+A ++ + S++ +VE + + DT F
Sbjct: 333 GRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILF 392
Query: 280 NCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
N II+A ++G++++ ++F MKE C P TF T+I+ Y +G E + L + M+
Sbjct: 393 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMML 451
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 101/214 (47%), Gaps = 2/214 (0%)
Query: 122 SFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
SF ++ SGG D+ + +++ G ++ +N G K + T L +
Sbjct: 304 SFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTA 363
Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
R + + S++ ++K P + +N +I ++G++++ + F+KMK G KP
Sbjct: 364 LTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPT 423
Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF 299
+ T+ +L+ Y K G + + +L + +++ + N ++ A+ +E+ +
Sbjct: 424 ASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIV 483
Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
M+ PD +TF T+ +AY +G T A+++
Sbjct: 484 YKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDM 517
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 134/264 (50%), Gaps = 2/264 (0%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
LG+ KQ + L + M+ DG +P+ Y L+ +YG++ L+EA + N M+ + CKP
Sbjct: 374 LGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQE-AGCKP 432
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
D TY LI K D+ + M G+ TY+ II+ GKA F
Sbjct: 433 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 492
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
MV+ GC P++ T N M+ + + N + K Y + G + D T +I+ + G
Sbjct: 493 CEMVDQ-GCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGH 551
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
G ++ +V MQ++ + P Y ++++ +GKAG++EK ++++ M H G++PN T
Sbjct: 552 CGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT 611
Query: 244 YCSLVSAYSKAGLIMKVDSILRQV 267
SL+S + + I + +L+ +
Sbjct: 612 CNSLLSTFLRVNKIAEAYELLQNM 635
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 137/279 (49%), Gaps = 1/279 (0%)
Query: 62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
K D +TY+ ++ + + +F I K+L EM G + + VTYN +I YG+A E +
Sbjct: 361 KHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMN 420
Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
F+ M E+G C PD T ++I + +G ++ Y G+ D T +++
Sbjct: 421 VFNQMQEAG-CKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL 479
Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
G+AG + M + P +VTYNI+++ KA + + + ++ M++ G +P+
Sbjct: 480 GKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 539
Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
+TY ++ G + + +++ +++ + I D P + ++ +G+AG+VEK + +
Sbjct: 540 VTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQA 599
Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
M P+ T +++ + + A L M+A+
Sbjct: 600 MLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLAL 638
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 134/282 (47%), Gaps = 8/282 (2%)
Query: 24 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSD-CKPDVYTYSILIKSCTKFHR 80
G K YT +V G++ + F IN + + V D C+P+ TY+ LI S + +
Sbjct: 359 GFKHDGHTYTTMVGNLGRA----KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANY 414
Query: 81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
+ + +M G + VTY T+ID + KA F ++ +++GG PD FT +
Sbjct: 415 LNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAG-FLDIAMDMYQRMQAGGLSPDTFTYS 473
Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
+I+ G +G++ K + E G ++ T NI+ + +A Y + MQ
Sbjct: 474 VIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNA 533
Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
F P VTY+IV+E G G++E+ E F +M+ + P+ Y LV + KAG + K
Sbjct: 534 GFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKA 593
Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
+ + ++ + + P N ++S + + + + EL M
Sbjct: 594 WQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 1/244 (0%)
Query: 95 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154
G + TY T++ G+AK+F + MV G C P+ T N +I +YG + + +
Sbjct: 359 GFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDG-CQPNTVTYNRLIHSYGRANYLNE 417
Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
+N+ G K D T L + +AG D + MQ P TY+++I
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477
Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
GKAGH+ + F +M +G PN +TY ++ ++KA + R ++N+
Sbjct: 478 CLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEP 537
Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
D ++ ++ G G +E+ +F M++++ +PD + ++ + G E A
Sbjct: 538 DKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWY 597
Query: 335 NKMI 338
M+
Sbjct: 598 QAML 601
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 115/263 (43%), Gaps = 9/263 (3%)
Query: 78 FHRFDLIEKILAEMSYLGIECSAVTYNTII---DGYGKAKKFEEMESSFSAMVESGGCHP 134
RF + LG+ A N ++ + YG A F F + G
Sbjct: 309 LRRFRWGPAAEEALQNLGLRIDAYQANQVLKQMNDYGNALGF------FYWLKRQPGFKH 362
Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
D T +M+ G + + K +E G + + T N L SYGRA ++ +V
Sbjct: 363 DGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVF 422
Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
+ MQ+ P VTY +I+ KAG ++ + +++M+ G+ P++ TY +++ KA
Sbjct: 423 NQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKA 482
Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
G + + ++ + + +N ++ + +A + + +L+ M+ PD +T+
Sbjct: 483 GHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTY 542
Query: 315 ATMIQAYNALGMTEAAQNLENKM 337
+ +++ G E A+ + +M
Sbjct: 543 SIVMEVLGHCGYLEEAEAVFTEM 565
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/296 (19%), Positives = 120/296 (40%), Gaps = 29/296 (9%)
Query: 1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
M +LG C E+A +F M P VY LV +G++G +++A+ M +
Sbjct: 546 MEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLH-AG 604
Query: 61 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII----DGYGKAKKF 116
+P+V T + L+ + + ++ ++L M LG+ S TY ++ DG K
Sbjct: 605 LRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSK---- 660
Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQT 173
++ F + + HP L M +A + N+ N +LM ++
Sbjct: 661 --LDMGFCGQLMASTGHPAHMFLLKMPAAGPDGENVRNHAN--NFLDLMHSEDRESKRGL 716
Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT----------VVTYNIVIETFGKAGHIE 223
++ + ++G ++ SV + ++ FP ++ +++ E
Sbjct: 717 VDAVVDFLHKSGQKEEAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSR 776
Query: 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279
+ + K+M G P+ I +V+ + + + + + VE I +PFF
Sbjct: 777 TLAWFRKQMLASGTCPSRI---DIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFF 829
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%)
Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
+ G K + TY ++V +A ++ +L ++ +T +N +I +YG+A +
Sbjct: 356 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415
Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
+ +F M+E C PD +T+ T+I + G + A ++ +M A
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQA 462
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 153/307 (49%), Gaps = 2/307 (0%)
Query: 13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
AS L M+ + P+V ++AL+ A+ + G L EA ++M S PD++TYS LI
Sbjct: 309 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLI 367
Query: 73 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
R D + + M + VTYNT+I G+ KAK+ EE F M + G
Sbjct: 368 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 427
Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
+ T N++I +G+ + +K + + GV DI T +IL + G +K
Sbjct: 428 GNTV-TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 486
Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
V +++QK P + TYNI+IE KAG +E + F + +G+KPN I Y +++S +
Sbjct: 487 VFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC 546
Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
+ GL + D++ R+++ + ++ +N +I A + GD EL M+ V D
Sbjct: 547 RKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDAS 606
Query: 313 TFATMIQ 319
T + +I
Sbjct: 607 TISMVIN 613
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 155/325 (47%), Gaps = 2/325 (0%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
+ +A L + M++ G +P + Y +V+ + G +D A S + M+ + DV Y
Sbjct: 200 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIY 258
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
+ +I + + + + EM GI + VTYN++I ++ + S M+E
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
+P++ T +++I A+ G + + EK Y+E + DI T + L + D
Sbjct: 319 RK-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377
Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
+ + + + M + FP VVTYN +I+ F KA +E+ E F++M RG+ N++TY +L+
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437
Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
+AG I +++ + V D ++ ++ + G +EK +F +++
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 497
Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
PD T+ MI+ G E +L
Sbjct: 498 PDIYTYNIMIEGMCKAGKVEDGWDL 522
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 167/341 (48%), Gaps = 10/341 (2%)
Query: 2 VMLGKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
V+ G CK+ + A L + M ++ V +YT ++ A +++A + +M +
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN-K 284
Query: 60 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
+P+V TY+ LI+ + R+ ++L++M I + VT++ +ID + K K E
Sbjct: 285 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 344
Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQTLNI 176
E + M++ PDIFT +S+I+ + +++++ + F LM K ++ T N
Sbjct: 345 EKLYDEMIKRS-IDPDIFTYSSLINGFCMH---DRLDEAKHMFELMISKDCFPNVVTYNT 400
Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
L K + +A ++ + M +R VTYN +I+ +AG + ++ FKKM G
Sbjct: 401 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 460
Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
+ P+ ITY L+ K G + K + ++ S + D +N +I +AG VE
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520
Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
+LF ++ + P+ I + TMI + G+ E A L +M
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 148/320 (46%), Gaps = 2/320 (0%)
Query: 20 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
M+ G +P + ++L++ Y + EA + ++ M V + +P+ T++ LI +
Sbjct: 141 MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM-FVMEYQPNTVTFNTLIHGLFLHN 199
Query: 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
+ ++ M G + TY T+++G K + S M E G D+
Sbjct: 200 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM-EKGKIEADVVIY 258
Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
++I A N N+ + E + G++ ++ T N L + G + ++ M +
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318
Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
R P VVT++ +I+ F K G + + E+ + +M R + P+ TY SL++ + + +
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378
Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
+ + + D + +N +I + +A VE+ ELF M +R V + +T+ T+IQ
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438
Query: 320 AYNALGMTEAAQNLENKMIA 339
G + AQ + KM++
Sbjct: 439 GLFQAGDCDMAQKIFKKMVS 458
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 2/244 (0%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A L++ M+ + P + Y++L++ + LDEA M S DC P+V TY+ L
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS-KDCFPNVVTYNTL 401
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
IK K R + ++ EMS G+ + VTYNT+I G +A + + F MV S G
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV-SDG 460
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
PDI T + ++ G +EK + ++ DI T NI+ + +AG +
Sbjct: 461 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 520
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
+ + + P V+ Y +I F + G E+ + F++MK G PNS TY +L+ A
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRAR 580
Query: 252 SKAG 255
+ G
Sbjct: 581 LRDG 584
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%)
Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
I N L + + +D + S+ + MQ + +YNI+I F + +
Sbjct: 80 IVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLG 139
Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
KM G +P+ +T SL++ Y I + +++ Q+ + +T FN +I
Sbjct: 140 KMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHN 199
Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
+ L M R C PD T+ T++ G + A +L KM
Sbjct: 200 KASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 246
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 151/301 (50%), Gaps = 4/301 (1%)
Query: 20 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
M +G+ P + + ++SAY +A S MK + +PD T++I+I +K
Sbjct: 239 MTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKG-AKVRPDTTTFNIIIYCLSKLG 297
Query: 80 RFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF 137
+ + M EC VT+ +I+ Y + E + F AMV + G P+I
Sbjct: 298 QSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMV-AEGLKPNIV 356
Query: 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM 197
+ N+++ AY G + G+ D+ + L SYGR+ K + V M
Sbjct: 357 SYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMM 416
Query: 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257
+K P VVTYN +I+ +G G + + E F++M+ G+KPN ++ C+L++A S++
Sbjct: 417 RKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKK 476
Query: 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317
+ VD++L ++ + L+T +N I +Y A ++EK L+ +M+++ D++TF +
Sbjct: 477 VNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTIL 536
Query: 318 I 318
I
Sbjct: 537 I 537
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 149/310 (48%), Gaps = 4/310 (1%)
Query: 30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
D+Y ++ + + +D+A +M+ S CKPD TY LI + + ++ ++
Sbjct: 144 DIYNMMIRLHARHNWVDQARGLFFEMQKWS-CKPDAETYDALINAHGRAGQWRWAMNLMD 202
Query: 90 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
+M I S TYN +I+ G + + E M ++G PD+ T N ++SAY +
Sbjct: 203 DMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNG-VGPDLVTHNIVLSAYKSG 261
Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF--FPTVV 207
K ++ V+ D T NI+ + G + + + M+++ P VV
Sbjct: 262 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVV 321
Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
T+ ++ + G IE F+ M G+KPN ++Y +L+ AY+ G+ S+L +
Sbjct: 322 TFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDI 381
Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
+ + +I D + C++++YG++ K E+FL M++ P+ +T+ +I AY + G
Sbjct: 382 KQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFL 441
Query: 328 EAAQNLENKM 337
A + +M
Sbjct: 442 AEAVEIFRQM 451
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 146/313 (46%), Gaps = 37/313 (11%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
E +FE M+++GLKP++ Y AL+ AY G+ A S + D+K + PDV
Sbjct: 337 ENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ-NGIIPDV----- 390
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
V+Y +++ YG++++ + + F M+
Sbjct: 391 ------------------------------VSYTCLLNSYGRSRQPGKAKEVF-LMMRKE 419
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
P++ T N++I AYG++G + + + + + G+K ++ ++ L + R+ +
Sbjct: 420 RRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNV 479
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
+V+ Q R YN I ++ A +EK ++ M+ + +K +S+T+ L+S
Sbjct: 480 DTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISG 539
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
+ + S L+++E+ + L ++ ++ AY + G V + +F MK C PD
Sbjct: 540 SCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPD 599
Query: 311 NITFATMIQAYNA 323
I + +M+ AYNA
Sbjct: 600 VIAYTSMLHAYNA 612
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 125/307 (40%), Gaps = 37/307 (12%)
Query: 22 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81
S G+ + Y + + +Y + L++A + M+ K D T++ILI + ++
Sbjct: 488 SRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRK-KKVKADSVTFTILISGSCRMSKY 546
Query: 82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141
L EM L I + Y++++ Y K + E ES F+ M + GC PD+ S
Sbjct: 547 PEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQM-KMAGCEPDVIAYTS 605
Query: 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR- 200
M+ AY S K + + E G++ D + L +++ + G + +MD M+++
Sbjct: 606 MLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKE 665
Query: 201 -------FF-------------------------FPT--VVTYNIVIETFGKAGHIEKME 226
FF P+ + N ++ FGK+G +E M
Sbjct: 666 IPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMM 725
Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
+ F K+ G+ N TY L+ G K +L + + + + IIS
Sbjct: 726 KLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFG 785
Query: 287 GQAGDVE 293
++ +E
Sbjct: 786 ERSAGIE 792
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 90/217 (41%), Gaps = 6/217 (2%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
Q +A +F M G +P V YT+++ AY S +A +M++ + +PD
Sbjct: 580 QVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEA-NGIEPDSIAC 638
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS--AM 126
S L+++ F++ + M + + T + + +E + + M
Sbjct: 639 SALMRA---FNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQM 695
Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
++ I N M+ +G SG +E M K + + GV +++T IL + G
Sbjct: 696 MDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGN 755
Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223
+ K V+++M P+ Y +I ++ IE
Sbjct: 756 WRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIE 792
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 155/325 (47%), Gaps = 8/325 (2%)
Query: 1 MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--K 56
+++ G CK + A LF M G K + Y L+ + +G D+ + DM +
Sbjct: 268 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 57 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
+S P+V T+S+LI S K + +++L EM GI + +TYN++IDG+ K +
Sbjct: 328 KIS---PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRL 384
Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
EE M+ S GC PDI T N +I+ Y + I+ + + E +L GV A+ T N
Sbjct: 385 EEAIQMVDLMI-SKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNT 443
Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
L + + ++G + + + M R P +V+Y I+++ G +EK E F K++
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSK 503
Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
M+ + Y ++ A + + + V LD +N +IS + + K
Sbjct: 504 MELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKAD 563
Query: 297 ELFLTMKERHCVPDNITFATMIQAY 321
LF M E PD +T+ +I+A+
Sbjct: 564 ILFRKMTEEGHAPDELTYNILIRAH 588
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 155/332 (46%), Gaps = 3/332 (0%)
Query: 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
+C+ E L+ + M+ G KP++ LV+ +G + +A I+ M + +P+
Sbjct: 171 ECRVSEALELV-DRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVE-TGFQPNE 228
Query: 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
TY ++ K + L ++L +M I+ AV Y+ IIDG K + + F+
Sbjct: 229 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 288
Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
M E G DI T N++I + N+G + K + + ++ T ++L S+ + G
Sbjct: 289 M-EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEG 347
Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
+ ++ M +R P +TYN +I+ F K +E+ + M +G P+ +T+
Sbjct: 348 KLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFN 407
Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
L++ Y KA I + R++ VI +T +N ++ + Q+G +E +LF M R
Sbjct: 408 ILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR 467
Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
PD +++ ++ G E A + K+
Sbjct: 468 RVRPDIVSYKILLDGLCDNGELEKALEIFGKI 499
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 146/335 (43%), Gaps = 10/335 (2%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
+ + A LF M+ P+V + L SA ++ + + M+S +YT
Sbjct: 68 KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMES-KGIAHSIYTL 126
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
SI+I + + + ++ LG E V +NT+++G + E MVE
Sbjct: 127 SIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVE 186
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT----LNILTKSYGRA 184
G P + TLN++++ +G + + G + + T LN++ KS A
Sbjct: 187 MGH-KPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTA 245
Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
+ +R M++R V Y+I+I+ K G ++ F +M+ +G K + ITY
Sbjct: 246 LAMELLRK----MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITY 301
Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
+L+ + AG +LR + + + F+ +I ++ + G + + +L M +
Sbjct: 302 NTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQ 361
Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
R P+ IT+ ++I + E A + + MI+
Sbjct: 362 RGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMIS 396
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 101/243 (41%), Gaps = 1/243 (0%)
Query: 99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
+ + +N + K K++E + + +ES G I+TL+ MI+ + +
Sbjct: 87 TVIDFNRLFSAIAKTKQYE-LVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
+ +G + D N L + ++D M + PT++T N ++
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
G + +M G +PN +TY +++ K+G +LR++E ++ LD
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265
Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
++ II + G ++ LF M+ + D IT+ T+I + G + L MI
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325
Query: 339 AMK 341
K
Sbjct: 326 KRK 328
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 2/167 (1%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
E A LF+ M+S ++P + Y L+ +G L++A ++ S + D+ Y I
Sbjct: 455 EVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK-SKMELDIGIYMI 513
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
+I + D + + G++ A YN +I + + + F M E G
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
PD T N +I A+ + + E G AD+ T+ ++
Sbjct: 574 H-APDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMV 619
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 164/334 (49%), Gaps = 2/334 (0%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L K K + A LF+ M + G++P+V Y++L+S G +A ++DM P
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 324
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
DV+T+S LI + K + EK+ EM I+ S VTY+++I+G+ + +E + F
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
MV S C PD+ T N++I + +E+ + + E + G+ + T NIL + +
Sbjct: 385 EFMV-SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
AG D + + M P ++TYN +++ K G +EK F+ ++ M+P T
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 503
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
Y ++ KAG + + + V D +N +IS + + G E+ LF MK
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563
Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
E +P++ + T+I+A G EA+ L +M
Sbjct: 564 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 153/325 (47%), Gaps = 2/325 (0%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
+ +A L + M++ G +P + Y +V+ + G D AF+ +N M+ +P V Y
Sbjct: 201 KASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ-GKLEPGVLIY 259
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
+ +I K+ D + EM GI + VTY+++I ++ + S M+E
Sbjct: 260 NTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
+PD+FT +++I A+ G + + EK Y+E + I T + L + D
Sbjct: 320 RK-INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378
Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
+ + + +FM + FP VVTYN +I+ F K +E+ E F++M RG+ N++TY L+
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 438
Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
+AG I +++ + V + +N ++ + G +EK +F ++
Sbjct: 439 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 498
Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
P T+ MI+ G E +L
Sbjct: 499 PTIYTYNIMIEGMCKAGKVEDGWDL 523
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 145/311 (46%), Gaps = 2/311 (0%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
+ A LF M+ PS+ ++ L+SA + D S M+++ + YTYSI
Sbjct: 63 DDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLG-IPHNHYTYSI 121
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
LI + + L +L +M LG E + VT +++++GY +K+ E + M +
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT- 180
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
G P+ T N++I + + G + D+ T ++ + G D
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
++++ M++ P V+ YN +I+ K H++ FK+M+ +G++PN +TY SL+S
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
G +L + + D F+ +I A+ + G + + +L+ M +R P
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
Query: 311 NITFATMIQAY 321
+T++++I +
Sbjct: 361 IVTYSSLINGF 371
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 147/332 (44%), Gaps = 37/332 (11%)
Query: 8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
K+ +A L + M G +P+ + L+ EA + I+ M + C+PD+ T
Sbjct: 165 KRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVA-KGCQPDLVT 223
Query: 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
Y +++ K DL +L +M +E + YNTIIDG K K ++ + F M
Sbjct: 224 YGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM- 282
Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
E+ G P++ T +S+IS N G +W
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYG------RWS---------------------------- 308
Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
D R + D ++++ P V T++ +I+ F K G + + E+ + +M R + P+ +TY SL
Sbjct: 309 DASRLLSDMIERKIN-PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367
Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
++ + + + + + + D +N +I + + VE+ E+F M +R
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 427
Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
V + +T+ +IQ G + AQ + +M++
Sbjct: 428 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 111/267 (41%), Gaps = 37/267 (13%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A L++ M+ + PS+ Y++L++ + LDEA M S C PDV TY+ L
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS-KHCFPDVVTYNTL 402
Query: 72 IKSCTKFHRF-----------------------------------DLIEKILAEMSYLGI 96
IK K+ R D+ ++I EM G+
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Query: 97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
+ +TYNT++DG K K E+ F + S P I+T N MI +G +E
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK-MEPTIYTYNIMIEGMCKAGKVEDGW 521
Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
+ +L GVK D+ N + + R G ++ ++ M++ P YN +I
Sbjct: 522 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 581
Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSIT 243
+ G E E K+M+ G ++ T
Sbjct: 582 LRDGDREASAELIKEMRSCGFAGDAST 608
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%)
Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
TY+I+I F + + KM G +PN +T SL++ Y + I + +++ Q+
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177
Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
+ +T FN +I + L M + C PD +T+ ++ G T
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237
Query: 328 EAAQNLENKM 337
+ A NL NKM
Sbjct: 238 DLAFNLLNKM 247
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 160/340 (47%), Gaps = 5/340 (1%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
A L + M G P V Y LV+ + G LDEA +NDM S S C+P+V T++I+
Sbjct: 257 HAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS-SGCQPNVITHNII 315
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
++S R+ EK+LA+M G S VT+N +I+ + M + G
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG- 374
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
C P+ + N ++ + +++ ++ G DI T N + + + G +
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
+++ + + P ++TYN VI+ KAG K + +M+ + +KP++ITY SLV
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGL 494
Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
S+ G + + + E + + FN I+ ++ ++ + + M R C P+
Sbjct: 495 SREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNE 554
Query: 312 ITFATMIQAYNALGMTEAAQNLENKMI---AMKENSGKKL 348
++ +I+ GM + A L N++ MK++S +++
Sbjct: 555 TSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQV 594
Score = 125 bits (313), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 163/343 (47%), Gaps = 22/343 (6%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
LGK ++ A+ + E++ G P V Y ++S Y ++G ++ A S ++ M SVS P
Sbjct: 150 LGKTRK---AAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM-SVS---P 202
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID------GYGKAKKF- 116
DV TY+ +++S + ++L M +TY +I+ G G A K
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLL 262
Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
+EM GC PD+ T N +++ G +++ K+ N+ G + ++ T NI
Sbjct: 263 DEMRDR--------GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314
Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
+ +S G + ++ M ++ F P+VVT+NI+I + G + + + +KM G
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
+PNS++Y L+ + K + + L ++ + D +N +++A + G VE
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434
Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
E+ + + C P IT+ T+I G T A L ++M A
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA 477
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 135/328 (41%), Gaps = 32/328 (9%)
Query: 41 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA 100
++G L+E F + +M + PD+ + LI+ + + KIL + G
Sbjct: 114 RTGELEEGFKFLENMVYHGNV-PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDV 172
Query: 101 VTYNTIIDGYGKAKK-------FEEMESS---------FSAMVESG-------------- 130
+TYN +I GY KA + + M S ++ +SG
Sbjct: 173 ITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQ 232
Query: 131 -GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
C+PD+ T +I A + K +E G D+ T N+L + G D+
Sbjct: 233 RDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDE 292
Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
++ M P V+T+NI++ + G E+ M +G P+ +T+ L++
Sbjct: 293 AIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352
Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
+ GL+ + IL ++ ++ +N ++ + + +++ E M R C P
Sbjct: 353 FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYP 412
Query: 310 DNITFATMIQAYNALGMTEAAQNLENKM 337
D +T+ TM+ A G E A + N++
Sbjct: 413 DIVTYNTMLTALCKDGKVEDAVEILNQL 440
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 102/235 (43%), Gaps = 12/235 (5%)
Query: 111 GKAKKFEEMESSFS--------AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162
G+A+KFE + S +S + V S D+ + N+ + +G +E+ K+
Sbjct: 70 GRAQKFETLSSGYSNSNGNGHYSSVNSSFALEDVES-NNHLRQMVRTGELEEGFKFLENM 128
Query: 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222
G DI L + + R G K +++ ++ P V+TYN++I + KAG I
Sbjct: 129 VYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEI 188
Query: 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282
+M + P+ +TY +++ + +G + + +L ++ D D + +
Sbjct: 189 NNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTIL 245
Query: 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
I A + V +L M++R C PD +T+ ++ G + A N M
Sbjct: 246 IEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM 300
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277
+ G +E+ ++ + M + G P+ I +L+ + + G K IL +E S + D
Sbjct: 114 RTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVI 173
Query: 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQAYNALGMTEAAQNLENK 336
+N +IS Y +AG++ L++ +R V PD +T+ T++++ G + A + ++
Sbjct: 174 TYNVMISGYCKAGEINNA----LSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229
Query: 337 MI 338
M+
Sbjct: 230 ML 231
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L K + +A L + M + LKP Y++LV + G +DEA ++ + + +P
Sbjct: 459 LAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG-IRP 517
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEM 119
+ T++ ++ K + D L M G + + +Y +I+G G AK+ E+
Sbjct: 518 NAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALEL 576
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 2 VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 55
+MLG CK Q ++A M++ G KP+ YT L+ G+ EA +N++
Sbjct: 525 IMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 157/336 (46%), Gaps = 5/336 (1%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
LG+ K+ LL E+ G P V Y+ +V+ Y + G LD+ + I MK KP
Sbjct: 259 LGRIKEAHHLLLLMEL---KGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKR-KGLKP 314
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
+ Y Y +I + + E+ +EM GI V Y T+IDG+ K F
Sbjct: 315 NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
M S PD+ T ++IS + G++ + K ++E G++ D T L Y +
Sbjct: 375 YEM-HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCK 433
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
AG V + M + P VVTY +I+ K G ++ E +M G++PN T
Sbjct: 434 AGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFT 493
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
Y S+V+ K+G I + ++ + E + + DT + ++ AY ++G+++K E+ M
Sbjct: 494 YNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEML 553
Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
+ P +TF ++ + GM E + L N M+A
Sbjct: 554 GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLA 589
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 160/351 (45%), Gaps = 40/351 (11%)
Query: 7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
CK E A F M+ G+ P VYT L+ + + G + A +M S D PDV
Sbjct: 330 CKLAE-AEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS-RDITPDVL 387
Query: 67 TYSILIKSCTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
TY+ +I + D++E K+ EM G+E +VT+ +I+GY KA ++ +
Sbjct: 388 TYTAIISGFCQIG--DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHN 445
Query: 125 AMVESG----------------------------------GCHPDIFTLNSMISAYGNSG 150
M+++G G P+IFT NS+++ SG
Sbjct: 446 HMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSG 505
Query: 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210
NIE+ K EF G+ AD T L +Y ++G DK + ++ M + PT+VT+N
Sbjct: 506 NIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFN 565
Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270
+++ F G +E E+ M +G+ PN+ T+ SLV Y + +I + + +
Sbjct: 566 VLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR 625
Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
V D + ++ + +A ++++ LF MK + T++ +I+ +
Sbjct: 626 GVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 676
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 144/303 (47%), Gaps = 2/303 (0%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A LF M GL+P +T L++ Y ++G + +AF N M + C P+V TY+ L
Sbjct: 404 EAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQ-AGCSPNVVTYTTL 462
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
I K D ++L EM +G++ + TYN+I++G K+ EE E+ G
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEE-AVKLVGEFEAAG 521
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
+ D T +++ AY SG ++K ++ E G++ I T N+L + GM +
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 581
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
++++M + P T+N +++ + +++ +K M RG+ P+ TY +LV +
Sbjct: 582 KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGH 641
Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
KA + + + ++++ + ++ +I + + + E+F M+ D
Sbjct: 642 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADK 701
Query: 312 ITF 314
F
Sbjct: 702 EIF 704
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 1/216 (0%)
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
F E G C ++ + N +I G I++ L G D+ + + + Y
Sbjct: 234 FREFPEVGVCW-NVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
R G DK+ +++ M+++ P Y +I + + + EE F +M +G+ P+++
Sbjct: 293 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTV 352
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
Y +L+ + K G I ++ + D+ D + IIS + Q GD+ + G+LF M
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 412
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
+ PD++TF +I Y G + A + N MI
Sbjct: 413 FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 448
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK----SVSDCKPDVYTY 68
A+ +++ M S G+ P Y LV + ++ + EA+ +MK SVS V TY
Sbjct: 615 ATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVS-----VSTY 669
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
S+LIK K +F ++ +M G+ ++ D K K+ + + ++E
Sbjct: 670 SVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIE 729
Query: 129 S 129
+
Sbjct: 730 N 730
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 2/248 (0%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
LG+ KQ + + L + M+ DG KP+ Y L+ +YG++ L EA + N M+ + C+P
Sbjct: 369 LGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQE-AGCEP 427
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
D TY LI K D+ + M G+ TY+ II+ GKA F
Sbjct: 428 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLF 487
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
MV G C P++ T N MI+ + + N E K Y + G + D T +I+ + G
Sbjct: 488 CEMVGQG-CTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGH 546
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
G ++ V MQ++ + P Y ++++ +GKAG+++K ++++ M G++PN T
Sbjct: 547 CGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPT 606
Query: 244 YCSLVSAY 251
SL+S +
Sbjct: 607 CNSLLSTF 614
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 140/286 (48%), Gaps = 1/286 (0%)
Query: 55 MKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK 114
+K K D +TY+ ++ + + +F I K+L EM G + + VTYN +I YG+A
Sbjct: 349 LKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRAN 408
Query: 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTL 174
+E + F+ M E+G C PD T ++I + +G ++ Y G+ D T
Sbjct: 409 YLKEAMNVFNQMQEAG-CEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTY 467
Query: 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234
+++ G+AG + M + P +VT+NI+I KA + E + ++ M++
Sbjct: 468 SVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQN 527
Query: 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
G +P+ +TY ++ G + + + + +++ + + D P + ++ +G+AG+V+K
Sbjct: 528 AGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDK 587
Query: 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
+ + M + P+ T +++ + + A NL M+A+
Sbjct: 588 AWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLAL 633
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 129/277 (46%), Gaps = 7/277 (2%)
Query: 24 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFD 82
G K YT +V G++ E +++M V D CKP+ TY+ LI S + +
Sbjct: 354 GFKHDGHTYTTMVGNLGRAKQFGEINKLLDEM--VRDGCKPNTVTYNRLIHSYGRANYLK 411
Query: 83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142
+ +M G E VTY T+ID + KA + + M E+G PD FT + +
Sbjct: 412 EAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAG-LSPDTFTYSVI 470
Query: 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF 202
I+ G +G++ + + E G ++ T NI+ + +A Y+ + MQ F
Sbjct: 471 INCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGF 530
Query: 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262
P VTY+IV+E G G +E+ E F +M+ + P+ Y LV + KAG + K
Sbjct: 531 QPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQ 590
Query: 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
+ + + + + P N ++S + + V +M E +
Sbjct: 591 WYQAMLQAGLRPNVPTCNSLLSTFLR---VHRMSEAY 624
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 6/211 (2%)
Query: 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
D + N ++ N N W G K D T + + GRA + ++ ++
Sbjct: 325 DAYQANQVLKQMDNYANALGFFYWLKR--QPGFKHDGHTYTTMVGNLGRAKQFGEINKLL 382
Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
D M + P VTYN +I ++G+A ++++ F +M+ G +P+ +TYC+L+ ++KA
Sbjct: 383 DEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKA 442
Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
G + + ++++ + + DT ++ II+ G+AG + LF M + C P+ +TF
Sbjct: 443 GFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTF 502
Query: 315 ATMIQAYNALGMTEAAQNLENKMIAMKENSG 345
MI + E A L M +N+G
Sbjct: 503 NIMIALHAKARNYETALKLYRDM----QNAG 529
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
M +LG C E+A +F M P VY LV +G++G +D+A+ M +
Sbjct: 541 MEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQ-AG 599
Query: 61 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
+P+V T + L+ + + HR +L M LG+ S TY ++ A+ +M
Sbjct: 600 LRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDMG 659
Query: 121 SSFSAMVESGGCHP 134
M SG HP
Sbjct: 660 FCGQLMAVSG--HP 671
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 158/344 (45%), Gaps = 37/344 (10%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A LFE + G+KP Y AL+ Y ++G L +A S +++M+ PD +TYS+L
Sbjct: 322 EAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEK-RGVSPDEHTYSLL 380
Query: 72 IKSCTKFHRFDLIE-----------------------------------KILAEMSYLGI 96
I + R++ ++L EM +G+
Sbjct: 381 IDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGV 440
Query: 97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156
+ YN +ID +GK + ++F M+ S G PD T N++I + G E
Sbjct: 441 KPDRQFYNVVIDTFGKFNCLDHAMTTFDRML-SEGIEPDRVTWNTLIDCHCKHGRHIVAE 499
Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
+ + G T NI+ SYG +D M+ ++ M+ + P VVT+ +++ +
Sbjct: 500 EMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVY 559
Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
GK+G E ++MK G+KP+S Y +L++AY++ GL + + R + + +
Sbjct: 560 GKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSL 619
Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
N +I+A+G+ + + MKE PD +T+ T+++A
Sbjct: 620 LALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKA 663
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 145/329 (44%), Gaps = 2/329 (0%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
K P +A L + + GL +++SA SG EA + +++ S KP
Sbjct: 279 FAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQ-SGIKP 337
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
Y+ L+K K E +++EM G+ TY+ +ID Y A ++E
Sbjct: 338 RTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVL 397
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
M E+G P+ F + +++ + + G +K + E +GVK D Q N++ ++G+
Sbjct: 398 KEM-EAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGK 456
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
D + D M P VT+N +I+ K G EE F+ M+ RG P + T
Sbjct: 457 FNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATT 516
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
Y ++++Y + +L ++++ ++ + ++ YG++G E MK
Sbjct: 517 YNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMK 576
Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQN 332
P + + +I AY G++E A N
Sbjct: 577 SVGLKPSSTMYNALINAYAQRGLSEQAVN 605
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 137/292 (46%), Gaps = 4/292 (1%)
Query: 32 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD--LIEKILA 89
Y AL+ A ++ +++A + I M+ + D YS++I+S T+ ++ D ++ ++
Sbjct: 200 YNALIGACARNNDIEKALNLIAKMRQ-DGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYK 258
Query: 90 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
E+ +E N II G+ K+ M ++ G TL S+ISA +S
Sbjct: 259 EIERDKLELDVQLVNDIIMGFAKSGD-PSKALQLLGMAQATGLSAKTATLVSIISALADS 317
Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
G + E + E G+K + N L K Y + G S++ M+KR P TY
Sbjct: 318 GRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTY 377
Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
+++I+ + AG E K+M+ ++PNS + L++ + G K +L+++++
Sbjct: 378 SLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKS 437
Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
V D F+N +I +G+ ++ F M PD +T+ T+I +
Sbjct: 438 IGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 489
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 121/253 (47%), Gaps = 14/253 (5%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG---LLDEAFSTINDMKSVSD 60
GK + A F+ MLS+G++P + L+ + + G + +E F +
Sbjct: 454 FGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMER----RG 509
Query: 61 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
C P TY+I+I S R+D ++++L +M GI + VT+ T++D YGK+ +F +
Sbjct: 510 CLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAI 569
Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNIL 177
M +S G P N++I+AY G E+ N F +M G+K + LN L
Sbjct: 570 ECLEEM-KSVGLKPSSTMYNALINAYAQRGLSEQA---VNAFRVMTSDGLKPSLLALNSL 625
Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
++G + +V+ +M++ P VVTY +++ + +K+ +++M G
Sbjct: 626 INAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIMSGC 685
Query: 238 KPNSITYCSLVSA 250
KP+ L SA
Sbjct: 686 KPDRKARSMLRSA 698
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 141/310 (45%), Gaps = 7/310 (2%)
Query: 31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90
+Y+ L+ A G+S L EAF ++ ++++ TY+ LI +C + + + ++A+
Sbjct: 169 LYSILIHALGRSEKLYEAF-LLSQKQTLTPL-----TYNALIGACARNNDIEKALNLIAK 222
Query: 91 MSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAMVESGGCHPDIFTLNSMISAYGNS 149
M G + V Y+ +I ++ K + M +E D+ +N +I + S
Sbjct: 223 MRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKS 282
Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
G+ K + G+ A TL + + +G + ++ + +++ P Y
Sbjct: 283 GDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAY 342
Query: 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269
N +++ + K G ++ E +M+ RG+ P+ TY L+ AY AG +L+++E
Sbjct: 343 NALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEA 402
Query: 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329
DV ++ F+ +++ + G+ +K ++ MK PD + +I + +
Sbjct: 403 GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDH 462
Query: 330 AQNLENKMIA 339
A ++M++
Sbjct: 463 AMTTFDRMLS 472
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 158/332 (47%), Gaps = 1/332 (0%)
Query: 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
K + E+A LFE M G P+V YT L+ G++G +DEA+ DM PDV
Sbjct: 280 KVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLR-DGLTPDV 338
Query: 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
+ L+ K R + + + +EM + V+YNT+I ++K SS+
Sbjct: 339 VFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFD 398
Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
+++ P FT + +I Y + +EK E + G L + G+A
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458
Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
Y+ + +++ F + Y ++I+ FGK G + + + F +MK++G P+ Y
Sbjct: 459 RYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYN 518
Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
+L+S KAG+I + +S+LR++E + D N I++ + + G + E+F T+K
Sbjct: 519 ALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHS 578
Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
PD +T+ T++ + GM E A + +M
Sbjct: 579 GIKPDGVTYNTLLGCFAHAGMFEEAARMMREM 610
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 152/335 (45%), Gaps = 2/335 (0%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
LG+ K +A +F KP+ Y +++ Q G ++ +M + DC P
Sbjct: 172 LGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFP 231
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
D TYS LI S K R D ++ EM ++ + Y T++ Y K K E+ F
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
M + GC P ++T +I G +G +++ +Y + G+ D+ LN L G+
Sbjct: 292 EEM-KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGK 350
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAGHIEKMEEYFKKMKHRGMKPNSI 242
G +++ +V M PTVV+YN VI+ F H+ ++ +F KMK + P+
Sbjct: 351 VGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEF 410
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
TY L+ Y K + K +L +++ + +I+A G+A E ELF +
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKEL 470
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
KE + +A MI+ + G A +L N+M
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM 505
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 144/296 (48%), Gaps = 6/296 (2%)
Query: 1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS-GLLDEAFSTINDMKSVS 59
M +LGK + E+ + +F M P+V Y ++ A +S + E S + MK+ S
Sbjct: 345 MNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADS 404
Query: 60 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
P +TYSILI K +R + +L EM G Y ++I+ GKAK++E
Sbjct: 405 -VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAA 463
Query: 120 ESSFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
F + E+ G ++ + MI +G G + + +NE G D+ N L
Sbjct: 464 NELFKELKENFGNVSSRVYAV--MIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALM 521
Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
+AGM ++ S++ M++ + ++NI++ F + G + E F+ +KH G+K
Sbjct: 522 SGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIK 581
Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294
P+ +TY +L+ ++ AG+ + ++R++++ D ++ I+ A G D EK
Sbjct: 582 PDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNV-DHEK 636
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 7/261 (2%)
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEM---SYLGIECSAVTYNTIIDGYGKAKKFEEME 120
D TY LI+ + + + + + E+ +Y+ + S + ++ G+AK +
Sbjct: 125 DCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSV--SPAVLSELVKALGRAKMVSKAL 182
Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF-NLMGVKADIQTLNILTK 179
S F + C P T NS+I G EK+ + Y E N D T + L
Sbjct: 183 SVF-YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALIS 241
Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
SY + G D + D M+ PT Y ++ + K G +EK + F++MK G P
Sbjct: 242 SYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSP 301
Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
TY L+ KAG + + + + + D F N +++ G+ G VE++ +F
Sbjct: 302 TVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVF 361
Query: 300 LTMKERHCVPDNITFATMIQA 320
M C P +++ T+I+A
Sbjct: 362 SEMGMWRCTPTVVSYNTVIKA 382
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 7/169 (4%)
Query: 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233
L+ L K+ GRA M K SV + R PT TYN VI + G EK+ E + +M
Sbjct: 165 LSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMC 224
Query: 234 HRG-MKPNSITYCSLVSAYSKAGLIMKVDSILR---QVENSDVILDTPFFNCIISAYGQA 289
+ G P++ITY +L+S+Y K G + DS +R +++++ + + ++ Y +
Sbjct: 225 NEGDCFPDTITYSALISSYEKLG---RNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKV 281
Query: 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
G VEK +LF MK C P T+ +I+ G + A M+
Sbjct: 282 GKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 34/154 (22%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS------ 57
GKC + +A LF M + G P V Y AL+S ++G+++EA S + M+
Sbjct: 489 FGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRAD 548
Query: 58 ----------------------------VSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89
S KPD TY+ L+ F+ +++
Sbjct: 549 INSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMR 608
Query: 90 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
EM G E A+TY++I+D G ++ SSF
Sbjct: 609 EMKDKGFEYDAITYSSILDAVGNVDHEKDDVSSF 642
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
V N+ I+ F AG K R + + TY +L+ +A L ++ +++
Sbjct: 104 VEINVKIQFFKWAG------------KRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQE 151
Query: 267 V-ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
V N+ V + + ++ A G+A V K +F K R C P + T+ ++I G
Sbjct: 152 VVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEG 211
Query: 326 MTEAAQNLENKM 337
E + +M
Sbjct: 212 QHEKVHEVYTEM 223
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 161/343 (46%), Gaps = 7/343 (2%)
Query: 2 VMLGKCKQPEQASLLFEVML--SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
+LG + Q SL E+ + V VY A++ Y +SG +A ++ M+
Sbjct: 196 AILGVLGRWNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQ-R 254
Query: 60 DCKPDVYTYSILIKSCTKFHRF--DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
C PD+ +++ LI + K +L ++L + G+ A+TYNT++ + +
Sbjct: 255 GCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLD 314
Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
F M E+ C PD++T N+MIS YG G + E+ + E L G D T N L
Sbjct: 315 GAVKVFEDM-EAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSL 373
Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-RG 236
++ R +K++ V MQK F +TYN +I +GK G ++ + +K MK G
Sbjct: 374 LYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSG 433
Query: 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296
P++ITY L+ + KA ++ +++ ++ + + ++ +I Y +AG E+
Sbjct: 434 RNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAE 493
Query: 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
+ F M PDN+ ++ M+ T A L MI+
Sbjct: 494 DTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMIS 536
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 115/233 (49%), Gaps = 2/233 (0%)
Query: 89 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
AE CS + Y II+ YGK K +++ ES + +SG PD+ T NS++SAY
Sbjct: 742 AETKGFHFACSPM-YTDIIEAYGKQKLWQKAESVVGNLRQSGRT-PDLKTWNSLMSAYAQ 799
Query: 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208
G E+ +N G ++++NIL + G +++ V++ +Q F + +
Sbjct: 800 CGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSS 859
Query: 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
++++ F +AG+I ++++ + MK G P Y ++ K + + ++ ++E
Sbjct: 860 ILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEME 919
Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
++ ++ +N ++ Y D +K +++ +KE PD T+ T+I Y
Sbjct: 920 EANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY 972
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/329 (21%), Positives = 144/329 (43%), Gaps = 2/329 (0%)
Query: 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
GK K ++A + + G P + + +L+SAY Q G + A + N M P
Sbjct: 763 GKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMR-DGPSPT 821
Query: 65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
V + +IL+ + R + + ++ E+ +G + S + ++D + +A E++ +S
Sbjct: 822 VESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYS 881
Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
+M ++ G P I MI + E +E K ++ N + K Y
Sbjct: 882 SM-KAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAI 940
Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
Y K V +++ P TYN +I + + E+ ++M++ G+ P TY
Sbjct: 941 EDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTY 1000
Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
SL+SA+ K + + + + ++ + + LD F++ ++ +G K +L MK
Sbjct: 1001 KSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKN 1060
Query: 305 RHCVPDNITFATMIQAYNALGMTEAAQNL 333
P T ++ +Y++ G + A+ +
Sbjct: 1061 AGIEPTLATMHLLMVSYSSSGNPQEAEKV 1089
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 148/355 (41%), Gaps = 37/355 (10%)
Query: 1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
M +C E+A +F M+ DG P+V+ L+ A G L+E + + +++ +
Sbjct: 794 MSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMG- 852
Query: 61 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
K + +++ + + ++KI + M G + Y +I+ K K+ + E
Sbjct: 853 FKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
S M E ++ NSM+ Y + +K + Y G++ D T N L
Sbjct: 913 IMVSEM-EEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIM 971
Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK--------- 231
Y R ++ +M M+ P + TY +I FGK +E+ E+ F++
Sbjct: 972 YCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031
Query: 232 --------------------------MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
MK+ G++P T L+ +YS +G + + +L
Sbjct: 1032 RSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLS 1091
Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
+++++V L T ++ +I AY ++ D E L MK+ PD+ + ++A
Sbjct: 1092 NLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRA 1146
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 111/253 (43%), Gaps = 1/253 (0%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
+FE M + +P + Y A++S YG+ GL EA +++ + PD TY+ L+ +
Sbjct: 319 VFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELE-LKGFFPDAVTYNSLLYAF 377
Query: 76 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
+ + ++++ +M +G +TYNTII YGK + + + M G +PD
Sbjct: 378 ARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPD 437
Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
T +I + G + + +E +G+K +QT + L Y +AG ++
Sbjct: 438 AITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFS 497
Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
M + P + Y+++++ + K ++ M G P+ Y ++ K
Sbjct: 498 CMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKEN 557
Query: 256 LIMKVDSILRQVE 268
+ +R +E
Sbjct: 558 RSDDIQKTIRDME 570
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/374 (19%), Positives = 159/374 (42%), Gaps = 50/374 (13%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS---DCKPDVYTY 68
+AS +F + G + S V ++V Y + G + A +N ++ C P Y
Sbjct: 699 EASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSP---MY 755
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
+ +I++ K + E ++ + G T+N+++ Y + +E + F+ M+
Sbjct: 756 TDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMR 815
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
G P + ++N ++ A G +E++ E MG K ++ ++ ++ RAG
Sbjct: 816 DGPS-PTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874
Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME---------------------- 226
+++ + M+ + PT+ Y ++IE K + E
Sbjct: 875 EVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSML 934
Query: 227 -------------EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN--SD 271
+ ++++K G++P+ TY +L+ Y + + +++Q+ N D
Sbjct: 935 KMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLD 994
Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
LDT + +ISA+G+ +E+ +LF + + D + TM++ G A+
Sbjct: 995 PKLDT--YKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052
Query: 332 NLENKMIAMKENSG 345
K++ M +N+G
Sbjct: 1053 ----KLLQMMKNAG 1062
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 88/172 (51%), Gaps = 2/172 (1%)
Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK--MEEY 228
+Q N + Y R+G + K + ++D M++R P ++++N +I K+G + E
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284
Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
+++ G++P++ITY +L+SA S+ + + +E D +N +IS YG+
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGR 344
Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
G + LF+ ++ + PD +T+ +++ A+ TE + + +M M
Sbjct: 345 CGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM 396
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 127/278 (45%), Gaps = 8/278 (2%)
Query: 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC- 61
+L K K+ A ++ M K + ++ +++ Y +++ T+ + + +
Sbjct: 901 LLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTA---IEDYKKTVQVYQRIKETG 957
Query: 62 -KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
+PD TY+ LI + R + ++ +M LG++ TY ++I +GK K E+ E
Sbjct: 958 LEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAE 1017
Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
F ++ S G D ++M+ +SG+ K EK G++ + T+++L S
Sbjct: 1018 QLFEELL-SKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVS 1076
Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
Y +G + V+ ++ T + Y+ VI+ + ++ E +MK G++P+
Sbjct: 1077 YSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPD 1136
Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
+ V A S + ++V +L+ +E D+ D P
Sbjct: 1137 HRIWTCFVRAASFSKEKIEVMLLLKALE--DIGFDLPI 1172
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 131/340 (38%), Gaps = 47/340 (13%)
Query: 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
+L + + +A L+ M+SDG PS +Y ++ + D+ TI DM+ +
Sbjct: 517 VLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGMN 576
Query: 63 PDVYTYSILIK-SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
P + S+L+K C FDL + L G E T +I+ Y + + E
Sbjct: 577 P-LEISSVLVKGEC-----FDLAARQLKVAITNGYELENDTLLSILGSYSSSGRHSEAFE 630
Query: 122 SFSAMVESGGCHPDIFT---------LNSMISA--------------YGNSGNIEKM--- 155
+ E + T +N++ +A +G+S E +
Sbjct: 631 LLEFLKEHASGSKRLITEALIVLHCKVNNLSAALDEYFADPCVHGWCFGSSTMYETLLHC 690
Query: 156 ----------EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ-KRFFFP 204
+ +++ L G +A + Y + G + V++ + K F F
Sbjct: 691 CVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFA 750
Query: 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264
Y +IE +GK +K E ++ G P+ T+ SL+SAY++ G + +I
Sbjct: 751 CSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIF 810
Query: 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
+ N ++ A G +E EL++ ++E
Sbjct: 811 NTMMRDGPSPTVESINILLHALCVDGRLE---ELYVVVEE 847
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 161/341 (47%), Gaps = 5/341 (1%)
Query: 2 VMLGKCKQPEQASL--LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
+++G C++ + S +F M G + + YT L+ + +DEA MK
Sbjct: 259 LIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKD-D 317
Query: 60 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
+C P V TY++LIKS R ++ EM GI+ + TY +ID KFE+
Sbjct: 318 ECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKA 377
Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
M+E G P++ T N++I+ Y G IE + + +T N L K
Sbjct: 378 RELLGQMLEKG-LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIK 436
Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
Y ++ ++ M V++ M +R P VVTYN +I+ ++G+ + M RG+ P
Sbjct: 437 GYCKSNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVP 495
Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
+ TY S++ + K+ + + + +E V + + +I Y +AG V++ +
Sbjct: 496 DQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLML 555
Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340
M ++C+P+++TF +I A G + A LE KM+ +
Sbjct: 556 EKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKI 596
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 143/314 (45%), Gaps = 3/314 (0%)
Query: 20 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
ML D + P++ Y +V+ Y + G ++EA ++ + + PD +TY+ LI +
Sbjct: 209 MLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVE-AGLDPDFFTYTSLIMGYCQRK 267
Query: 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
D K+ EM G + V Y +I G A++ +E F M + C P + T
Sbjct: 268 DLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM-KDDECFPTVRTY 326
Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
+I + S + E G+K +I T +L S ++K R ++ M +
Sbjct: 327 TVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE 386
Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
+ P V+TYN +I + K G IE + + M+ R + PN+ TY L+ Y K+ + K
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHK 445
Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
+L ++ V+ D +N +I ++G+ + L M +R VPD T+ +MI
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMID 505
Query: 320 AYNALGMTEAAQNL 333
+ E A +L
Sbjct: 506 SLCKSKRVEEACDL 519
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 3/327 (0%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
E+A L ML GL P+V Y AL++ Y + G++++A + M+S P+ TY+
Sbjct: 375 EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMES-RKLSPNTRTYNE 433
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
LIK K + + +L +M + VTYN++IDG ++ F+ S M + G
Sbjct: 434 LIKGYCKSNVHKAM-GVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRG 492
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
PD +T SMI + S +E+ ++ GV ++ L Y +AG D+
Sbjct: 493 LV-PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
+++ M + P +T+N +I G +++ +KM G++P T L+
Sbjct: 552 HLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHR 611
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
K G S +Q+ +S D + I Y + G + ++ M+E PD
Sbjct: 612 LLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPD 671
Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
T++++I+ Y LG T A ++ +M
Sbjct: 672 LFTYSSLIKGYGDLGQTNFAFDVLKRM 698
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 152/340 (44%), Gaps = 11/340 (3%)
Query: 5 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
G CK E+A+ ++ GL P YT+L+ Y Q LD AF N+M + C+
Sbjct: 227 GYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM-PLKGCR 285
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGY-GKAKKFEEM 119
+ Y+ LI R D + +M EC + TY +I G +K E +
Sbjct: 286 RNEVAYTHLIHGLCVARRIDEAMDLFVKMK--DDECFPTVRTYTVLIKSLCGSERKSEAL 343
Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
+ +E G P+I T +I + + EK + + G+ ++ T N L
Sbjct: 344 --NLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALIN 401
Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
Y + GM + V++ M+ R P TYN +I+ + K+ ++ K KM R + P
Sbjct: 402 GYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLP 460
Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
+ +TY SL+ ++G +L + + ++ D + +I + ++ VE+ +LF
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLF 520
Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
+++++ P+ + + +I Y G + A + KM++
Sbjct: 521 DSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 134/304 (44%), Gaps = 27/304 (8%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L K K+ E+A LF+ + G+ P+V +YTAL+ Y ++G +DEA + M S +C P
Sbjct: 507 LCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS-KNCLP 565
Query: 64 DVYTYSILIKS-CT--KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
+ T++ LI C K L+E+ +M +G++ + T +I K F+
Sbjct: 566 NSLTFNALIHGLCADGKLKEATLLEE---KMVKIGLQPTVSTDTILIHRLLKDGDFDHAY 622
Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
S F M+ S G PD T + I Y G + E + GV D+ T + L K
Sbjct: 623 SRFQQML-SSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKG 681
Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-----TFGKAGHIEK--------ME- 226
YG G + V+ M+ P+ T+ +I+ +GK E ME
Sbjct: 682 YGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEF 741
Query: 227 ----EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF-FNC 281
E +KM + PN+ +Y L+ + G + + + ++ ++ I + FN
Sbjct: 742 DTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNA 801
Query: 282 IISA 285
++S
Sbjct: 802 LLSC 805
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/351 (22%), Positives = 143/351 (40%), Gaps = 48/351 (13%)
Query: 26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
K SV Y +L++ +G + F M D D L + K RF+L
Sbjct: 120 KHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKY 179
Query: 86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
K++ I C YNT+++ + +EM+ + M+E C P+I+T N M++
Sbjct: 180 KLI-------IGC----YNTLLNSLARFGLVDEMKQVYMEMLEDKVC-PNIYTYNKMVNG 227
Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD----------------- 188
Y GN+E+ ++ ++ G+ D T L Y + D
Sbjct: 228 YCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRN 287
Query: 189 ---------------KMRSVMDF---MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
++ MD M+ FPTV TY ++I++ + + K
Sbjct: 288 EVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVK 347
Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
+M+ G+KPN TY L+ + K +L Q+ ++ + +N +I+ Y + G
Sbjct: 348 EMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407
Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
+E ++ M+ R P+ T+ +I+ Y + +A L NKM+ K
Sbjct: 408 MIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVL-NKMLERK 457
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 104/249 (41%), Gaps = 19/249 (7%)
Query: 20 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIK------ 73
M +G+ P + Y++L+ YG G + AF + M+ + C+P +T+ LIK
Sbjct: 663 MRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRD-TGCEPSQHTFLSLIKHLLEMK 721
Query: 74 ------------SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
+ + FD + ++L +M + +A +Y +I G + E
Sbjct: 722 YGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEK 781
Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
F M + G P N+++S + K ++ +G +++ +L
Sbjct: 782 VFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGL 841
Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
+ G ++ SV + + ++ + + I+I+ GK G +E E F M+ G K +S
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSS 901
Query: 242 ITYCSLVSA 250
TY L+
Sbjct: 902 QTYSLLIEG 910
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 155/325 (47%), Gaps = 2/325 (0%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
+ +A L + M+ G +P++ Y +V+ + G D A + +N M++ + + DV +
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEA-AKIEADVVIF 263
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
+ +I S K+ D + EM GI + VTY+++I ++ + S M+E
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
+P++ T N++I A+ G + EK Y++ + DI T N L + D
Sbjct: 324 KK-INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382
Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
K + + +FM + FP VVTYN +I+ F K+ +E E F++M HRG+ +++TY +L+
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442
Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
G + +Q+ + V D ++ ++ G +EK E+F M++
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 502
Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
D + TMI+ G + +L
Sbjct: 503 LDIYIYTTMIEGMCKAGKVDDGWDL 527
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 141/304 (46%), Gaps = 2/304 (0%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
AS L M+ + P++ + AL+ A+ + G EA +DM S PD++TY+ L
Sbjct: 313 DASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS-IDPDIFTYNSL 371
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
+ R D +++ M VTYNT+I G+ K+K+ E+ F M G
Sbjct: 372 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG- 430
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
D T ++I + G+ + +K + + GV DI T +IL G +K
Sbjct: 431 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 490
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
V D+MQK + Y +IE KAG ++ + F + +G+KPN +TY +++S
Sbjct: 491 EVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 550
Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
L+ + ++L++++ + ++ +N +I A+ + GD EL M+ V D
Sbjct: 551 CSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 610
Query: 312 ITFA 315
T
Sbjct: 611 STIG 614
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 160/339 (47%), Gaps = 4/339 (1%)
Query: 1 MVMLGKCKQPEQ--ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
+V+ G CK+ + A L M + ++ V ++ ++ + + +D+A + +M++
Sbjct: 230 VVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET- 288
Query: 59 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
+P+V TYS LI + R+ ++L++M I + VT+N +ID + K KF E
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
E + M++ PDIFT NS+++ + ++K ++ + D+ T N L
Sbjct: 349 AEKLYDDMIKRS-IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLI 407
Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
K + ++ + + M R VTY +I+ G + ++ FK+M G+
Sbjct: 408 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 467
Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
P+ +TY L+ G + K + ++ S++ LD + +I +AG V+ +L
Sbjct: 468 PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDL 527
Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
F ++ + P+ +T+ TMI + + + A L KM
Sbjct: 528 FCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 566
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 37/332 (11%)
Query: 8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
K+ A L + M+ G +P +T L+ EA + ++ M C+P++ T
Sbjct: 169 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVT 227
Query: 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
Y +++ K DL +L +M IE V +NTIID K + ++ + F M
Sbjct: 228 YGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM- 286
Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
E+ G P++ T +S+IS + G +W + L+
Sbjct: 287 ETKGIRPNVVTYSSLISCLCSYG------RWSDASQLLS--------------------- 319
Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
D ++K+ P +VT+N +I+ F K G + E+ + M R + P+ TY SL
Sbjct: 320 -------DMIEKKIN-PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSL 371
Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
V+ + + K + + + D D +N +I + ++ VE ELF M R
Sbjct: 372 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL 431
Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
V D +T+ T+IQ G + AQ + +M++
Sbjct: 432 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 463
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 138/306 (45%), Gaps = 2/306 (0%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
LF M+ PS+ + L+SA + D S M+ + + +YTY+ILI
Sbjct: 72 LFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRL-EIVHGLYTYNILINCF 130
Query: 76 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
+ + L +L +M LG E S VT +++++GY K+ + + MVE G PD
Sbjct: 131 CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM-GYRPD 189
Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
T ++I + + G + ++ T ++ + G D ++++
Sbjct: 190 TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLN 249
Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
M+ VV +N +I++ K H++ FK+M+ +G++PN +TY SL+S G
Sbjct: 250 KMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYG 309
Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
+L + + + FN +I A+ + G + +L+ M +R PD T+
Sbjct: 310 RWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYN 369
Query: 316 TMIQAY 321
+++ +
Sbjct: 370 SLVNGF 375
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 1/245 (0%)
Query: 99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
S V +N ++ K KKF+ + S M H ++T N +I+ + I
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVH-GLYTYNILINCFCRRSQISLALAL 142
Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
+ +G + I TL+ L Y +++D M + + P +T+ +I
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
+ +M RG +PN +TY +V+ K G ++L ++E + + D
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262
Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
FN II + + V+ LF M+ + P+ +T++++I + G A L + MI
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322
Query: 339 AMKEN 343
K N
Sbjct: 323 EKKIN 327
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 37/330 (11%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A L + M+ G KP + LV+ SG EA I+ M C+P+ TY +
Sbjct: 176 EALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYG-CQPNAVTYGPV 234
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
+ K + L ++L +M I+ AV Y+ IIDG K
Sbjct: 235 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK------------------- 275
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
G+++ +NE + G+ +I T NIL + AG +D
Sbjct: 276 -----------------HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
++ M KR P VVT++++I++F K G + + EE K+M HRG+ P++ITY SL+ +
Sbjct: 319 KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGF 378
Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
K + K + ++ + + + FN +I+ Y +A ++ ELF M R V D
Sbjct: 379 CKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADT 438
Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIAMK 341
+T+ T+IQ + LG A+ L +M++ K
Sbjct: 439 VTYNTLIQGFCELGKLNVAKELFQEMVSRK 468
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 144/332 (43%), Gaps = 2/332 (0%)
Query: 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
K Q A L M +K Y+ ++ + G LD AF+ N+M+ + ++
Sbjct: 240 KSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME-MKGITTNI 298
Query: 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
TY+ILI R+D K+L +M I + VT++ +ID + K K E E
Sbjct: 299 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 358
Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
M+ G PD T S+I + +++K + + G +I+T NIL Y +A
Sbjct: 359 MIHRG-IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 417
Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
D + M R VTYN +I+ F + G + +E F++M R + PN +TY
Sbjct: 418 RIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYK 477
Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
L+ G K I ++E S + LD +N II A V+ +LF ++ +
Sbjct: 478 ILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK 537
Query: 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
P T+ MI G A+ L KM
Sbjct: 538 GVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM 569
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 154/336 (45%), Gaps = 6/336 (1%)
Query: 1 MVMLGKCKQP--EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
+++ G CK + A LF M G+ ++ Y L+ + +G D+ + DM
Sbjct: 268 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK- 326
Query: 59 SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118
P+V T+S+LI S K + E++ EM + GI +TY ++IDG+ K ++
Sbjct: 327 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386
Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
MV S GC P+I T N +I+ Y + I+ + + + +L GV AD T N L
Sbjct: 387 ANQMVDLMV-SKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445
Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
+ + G + + + M R P +VTY I+++ G EK E F+K++ M+
Sbjct: 446 QGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKME 505
Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
+ Y ++ A + + + V +N +I + G + + L
Sbjct: 506 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELL 565
Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
F M+E PD T+ +I+A+ LG +A ++++
Sbjct: 566 FRKMEEDGHAPDGWTYNILIRAH--LGDGDATKSVK 599
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 153/338 (45%), Gaps = 16/338 (4%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
+ + A LF M+ P+V ++ L SA ++ D + M+ + ++YT
Sbjct: 68 KADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQME-LKGIAHNLYTL 126
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
SI+I + + L + ++ LG E + +T++T+I+G + E MVE
Sbjct: 127 SIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVE 186
Query: 129 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
G PD+ T+N++++ SG I+KM ++ + N + LN++ KS
Sbjct: 187 MGH-KPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGP---VLNVMCKSG 242
Query: 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241
A + +R M++R V Y+I+I+ K G ++ F +M+ +G+ N
Sbjct: 243 QTALAMELLRK----MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNI 298
Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
ITY L+ + AG +LR + + + F+ +I ++ + G + + EL
Sbjct: 299 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 358
Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
M R PD IT+ ++I + + A + + M++
Sbjct: 359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 139/304 (45%), Gaps = 10/304 (3%)
Query: 41 QSGLLD----EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI 96
+SGL+D +A DM S P V +S L + K ++DL+ + +M GI
Sbjct: 61 RSGLVDIKADDAIDLFRDMIH-SRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGI 119
Query: 97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAM--VESGGCHPDIFTLNSMISAYGNSGNIEK 154
+ T + +I+ + + +K + +FSAM + G P+ T +++I+ G + +
Sbjct: 120 AHNLYTLSIMINCFCRCRK---LCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSE 176
Query: 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214
+ + MG K D+ T+N L +G + ++D M + P VTY V+
Sbjct: 177 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLN 236
Query: 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274
K+G E +KM+ R +K +++ Y ++ K G + ++ ++E +
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITT 296
Query: 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334
+ +N +I + AG + +L M +R P+ +TF+ +I ++ G A+ L
Sbjct: 297 NIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 356
Query: 335 NKMI 338
+MI
Sbjct: 357 KEMI 360
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 150/322 (46%), Gaps = 2/322 (0%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
LF M +K SV Y+ ++ + + G D+A S N+M+ + K DV TYS LI
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME-MKGIKADVVTYSSLIGGL 290
Query: 76 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
++D K+L EM I VT++ +ID + K K E + ++ M+ + G PD
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI-TRGIAPD 349
Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
T NS+I + + + + ++ G + DI T +IL SY +A D +
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 409
Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
+ + P +TYN ++ F ++G + +E F++M RG+ P+ +TY L+ G
Sbjct: 410 EISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 469
Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
+ K I +++ S + L +N II A V+ LF ++ ++ PD +T+
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 529
Query: 316 TMIQAYNALGMTEAAQNLENKM 337
MI G A L KM
Sbjct: 530 VMIGGLCKKGSLSEADMLFRKM 551
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 143/311 (45%), Gaps = 2/311 (0%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
+ A LF M G+K V Y++L+ G D+ + +M + PDV T+S
Sbjct: 262 DDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG-RNIIPDVVTFSA 320
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
LI K + +++ EM GI +TYN++IDG+ K E F MV S
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV-SK 379
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
GC PDI T + +I++Y + ++ + + E + G+ + T N L + ++G +
Sbjct: 380 GCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAA 439
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
+ + M R P+VVTY I+++ G + K E F+KM+ M Y ++
Sbjct: 440 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 499
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
A + S+ + + V D +N +I + G + + LF MKE C PD
Sbjct: 500 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPD 559
Query: 311 NITFATMIQAY 321
+ T+ +I+A+
Sbjct: 560 DFTYNILIRAH 570
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 145/316 (45%), Gaps = 2/316 (0%)
Query: 24 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
G +P ++ LV+ + G + EA + ++ M + +PD+ T S LI R
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ-RPDLVTVSTLINGLCLKGRVSE 193
Query: 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
++ M G + VTY +++ K+ F M E + + +I
Sbjct: 194 ALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM-EERNIKASVVQYSIVI 252
Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
+ G+ + +NE + G+KAD+ T + L G +D ++ M R
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 312
Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
P VVT++ +I+ F K G + + +E + +M RG+ P++ITY SL+ + K + + + +
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 372
Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323
+ + D ++ +I++Y +A V+ LF + + +P+ IT+ T++ +
Sbjct: 373 FDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQ 432
Query: 324 LGMTEAAQNLENKMIA 339
G AA+ L +M++
Sbjct: 433 SGKLNAAKELFQEMVS 448
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 141/310 (45%), Gaps = 10/310 (3%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
LFE M+ P+ + L SA ++ D M+ ++ + D+YT +I+I
Sbjct: 57 LFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGME-LNGIEHDMYTMTIMINCY 115
Query: 76 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
+ + +L LG E +T++T+++G+ + E + MVE PD
Sbjct: 116 CRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ-RPD 174
Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT----LNILTKSYGRAGMYDKMR 191
+ T++++I+ G + + + G + D T LN L KS A D R
Sbjct: 175 LVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFR 234
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
M++R +VV Y+IVI++ K G + F +M+ +G+K + +TY SL+
Sbjct: 235 K----MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
G +LR++ ++I D F+ +I + + G + + EL+ M R PD
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350
Query: 312 ITFATMIQAY 321
IT+ ++I +
Sbjct: 351 ITYNSLIDGF 360
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 73/288 (25%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A L+ M++ G+ P Y +L+ + + L EA + + D+ C+PD+ TYSIL
Sbjct: 333 EAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEA-NQMFDLMVSKGCEPDIVTYSIL 391
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
I S K R D ++ E+S G+ + +TYNT++ G+ ++ K + F MV S G
Sbjct: 392 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV-SRG 450
Query: 132 CHPDIFTLNSMISAYGNSGNI-------EKMEK--------------------------W 158
P + T ++ ++G + EKM+K W
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAW 510
Query: 159 --YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
+ + GVK D+ VTYN++I
Sbjct: 511 SLFCSLSDKGVKPDV-----------------------------------VTYNVMIGGL 535
Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY-SKAGLIMKVDSI 263
K G + + + F+KMK G P+ TY L+ A+ +GLI V+ I
Sbjct: 536 CKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELI 583
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/215 (18%), Positives = 92/215 (42%), Gaps = 1/215 (0%)
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
F +M++S P N + SA + + + + L G++ D+ T+ I+ Y
Sbjct: 58 FESMIQSRPL-PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYC 116
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
R SV+ K + P +T++ ++ F G + + +M +P+ +
Sbjct: 117 RKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLV 176
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
T +L++ G + + ++ ++ D + +++ ++G+ +LF M
Sbjct: 177 TVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM 236
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
+ER+ + ++ +I + G + A +L N+M
Sbjct: 237 EERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 271
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 157/326 (48%), Gaps = 2/326 (0%)
Query: 13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
A LF+ M + G P+V Y L+ Y + +D+ F + M ++ +P++ +Y+++I
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM-ALKGLEPNLISYNVVI 282
Query: 73 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
+ R + +L EM+ G VTYNT+I GY K F + + M+ G
Sbjct: 283 NGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG-L 341
Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
P + T S+I + +GN+ + ++ ++ + G+ + +T L + + G ++
Sbjct: 342 TPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401
Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
V+ M F P+VVTYN +I G +E + MK +G+ P+ ++Y +++S +
Sbjct: 402 VLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFC 461
Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
++ + + + R++ + DT ++ +I + + ++ +L+ M PD
Sbjct: 462 RSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEF 521
Query: 313 TFATMIQAYNALGMTEAAQNLENKMI 338
T+ +I AY G E A L N+M+
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEMV 547
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 149/301 (49%), Gaps = 3/301 (0%)
Query: 22 SDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80
+ G P V Y A++ A +S + A + +M S P+V+TY+ILI+
Sbjct: 162 AHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLE-SQVSPNVFTYNILIRGFCFAGN 220
Query: 81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
D+ + +M G + VTYNT+IDGY K +K ++ +M G P++ + N
Sbjct: 221 IDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG-LEPNLISYN 279
Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
+I+ G ++++ E N G D T N L K Y + G + + + M +
Sbjct: 280 VVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 339
Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
P+V+TY +I + KAG++ + E+ +M+ RG+ PN TY +LV +S+ G + +
Sbjct: 340 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399
Query: 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
+LR++ ++ +N +I+ + G +E + MKE+ PD ++++T++
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459
Query: 321 Y 321
+
Sbjct: 460 F 460
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/352 (22%), Positives = 152/352 (43%), Gaps = 52/352 (14%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A + M +G PSV Y AL++ + +G +++A + + DMK PDV +YS +
Sbjct: 398 EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE-KGLSPDVVSYSTV 456
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
+ + + D ++ EM GI+ +TY+++I G+ + ++ +E + M+ G
Sbjct: 457 LSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG- 515
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT------------- 178
PD FT ++I+AY G++EK + +NE GV D+ T ++L
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAK 575
Query: 179 -------------------------------------KSYGRAGMYDKMRSVMDFMQKRF 201
K + GM + V + M +
Sbjct: 576 RLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKN 635
Query: 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261
P YNI+I +AG I K +K+M G +++T +LV A K G + +++
Sbjct: 636 HKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELN 695
Query: 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
S++ V S + + ++ + G+++ + ++ M + +P+ I+
Sbjct: 696 SVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNGIS 747
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 132/284 (46%), Gaps = 19/284 (6%)
Query: 61 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL---GIECSAVTYNTIIDGYGKAKK-F 116
C + +++KS + R LI+K L+ + G ++YN ++D ++K+
Sbjct: 130 CYSTSSVFDLVVKS---YSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNI 186
Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
E+ F M+ES P++FT N +I + +GNI+ +++ G ++ T N
Sbjct: 187 SFAENVFKEMLES-QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNT 245
Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236
L Y + D ++ M + P +++YN+VI + G ++++ +M RG
Sbjct: 246 LIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG 305
Query: 237 MKPNSITYCSLVSAYSKAG-----LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
+ +TY +L+ Y K G L+M + +LR VI + +I + +AG+
Sbjct: 306 YSLDEVTYNTLIKGYCKEGNFHQALVMHAE-MLRHGLTPSVIT----YTSLIHSMCKAGN 360
Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLE 334
+ + E M+ R P+ T+ T++ ++ G M EA + L
Sbjct: 361 MNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLR 404
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 51/232 (21%)
Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT--------------------- 178
N ++ + + I K W N ++ TL+ILT
Sbjct: 53 NLLLKSQNDQALILKFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLD 112
Query: 179 -----------------------------KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY 209
KSY R + DK S++ Q F P V++Y
Sbjct: 113 DEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSY 172
Query: 210 NIVIE-TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
N V++ T +I E FK+M + PN TY L+ + AG I ++ ++E
Sbjct: 173 NAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKME 232
Query: 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320
+ + +N +I Y + ++ +L +M + P+ I++ +I
Sbjct: 233 TKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 174/364 (47%), Gaps = 37/364 (10%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
+ +A L + M+ G +P++ Y +V+ + G +D AF+ +N M++ + + +V Y
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEANVVIY 263
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
S +I S K+ D + EM G+ + +TY+++I +++ + S M+E
Sbjct: 264 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIE 323
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
+P++ T N++I A+ G + + EK Y+E + DI T + L + D
Sbjct: 324 RK-INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382
Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
+ + + + M + FP VVTYN +I F KA I++ E F++M RG+ N++TY +L+
Sbjct: 383 EAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442
Query: 249 SAYSKA----------------GL---IMKVDSILR------QVENSDVILD-------T 276
+ +A G+ IM +++L ++E + V+ +
Sbjct: 443 HGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 502
Query: 277 P---FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
P +N +I +AG VE +LF ++ + PD I + TMI + G+ E A L
Sbjct: 503 PTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADAL 562
Query: 334 ENKM 337
KM
Sbjct: 563 FRKM 566
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 132/264 (50%), Gaps = 2/264 (0%)
Query: 13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
AS L M+ + P+V + AL+ A+ + G L EA ++M S PD++TYS LI
Sbjct: 314 ASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLI 372
Query: 73 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
R D + + M + VTYNT+I+G+ KAK+ +E F M + G
Sbjct: 373 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRG-L 431
Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
+ T ++I + + + + + + + GV +I T N L + G +K
Sbjct: 432 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMV 491
Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
V +++Q+ PT+ TYNI+IE KAG +E + F + +G+KP+ I Y +++S +
Sbjct: 492 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFC 551
Query: 253 KAGLIMKVDSILRQVENSDVILDT 276
+ GL + D++ R++ + D+
Sbjct: 552 RKGLKEEADALFRKMREDGPLPDS 575
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 146/310 (47%), Gaps = 2/310 (0%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L K + + A LF M + G++P+V Y++L+S +A ++DM P
Sbjct: 270 LCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIE-RKINP 328
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
+V T++ LI + K + EK+ EM I+ TY+++I+G+ + +E + F
Sbjct: 329 NVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 388
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
M+ S C P++ T N++I+ + + I++ + + E + G+ + T L + +
Sbjct: 389 ELMI-SKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQ 447
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
A D + V M P ++TYN +++ K G +EK F+ ++ M+P T
Sbjct: 448 ARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 507
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
Y ++ KAG + + + V D +N +IS + + G E+ LF M+
Sbjct: 508 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMR 567
Query: 304 ERHCVPDNIT 313
E +PD+ T
Sbjct: 568 EDGPLPDSGT 577
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 150/332 (45%), Gaps = 37/332 (11%)
Query: 8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
K+ A L + M+ G +P +T L+ EA + ++ M C+P++ T
Sbjct: 169 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVT 227
Query: 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
Y +++ K DL +L +M IE + V Y+T+ID K + ++ + F+ M
Sbjct: 228 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM- 286
Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
E+ G P++ T +S+IS N E+W
Sbjct: 287 ENKGVRPNVITYSSLISCLCN------YERWS---------------------------- 312
Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
D R + D ++++ P VVT+N +I+ F K G + + E+ + +M R + P+ TY SL
Sbjct: 313 DASRLLSDMIERKIN-PNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 371
Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
++ + + + + + + D + +N +I+ + +A +++ ELF M +R
Sbjct: 372 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGL 431
Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
V + +T+ T+I + + AQ + +M++
Sbjct: 432 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 463
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 155/330 (46%), Gaps = 14/330 (4%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
LF M+ PS+ + L+SA + D S M+ + ++YTY+ILI
Sbjct: 72 LFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLG-ISHNLYTYNILINCF 130
Query: 76 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
+ + L +L +M LG E S VT +++++GY K+ + + MVE G PD
Sbjct: 131 CRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM-GYRPD 189
Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
T ++I + + G + ++ T ++ + G D ++++
Sbjct: 190 TITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLN 249
Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA----- 250
M+ VV Y+ VI++ K H + F +M+++G++PN ITY SL+S
Sbjct: 250 KMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYE 309
Query: 251 -YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
+S A ++ D I R++ N +V+ FN +I A+ + G + + +L+ M +R P
Sbjct: 310 RWSDASRLLS-DMIERKI-NPNVVT----FNALIDAFVKEGKLVEAEKLYDEMIKRSIDP 363
Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIA 339
D T++++I + + A+++ MI+
Sbjct: 364 DIFTYSSLINGFCMHDRLDEAKHMFELMIS 393
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 118/299 (39%), Gaps = 37/299 (12%)
Query: 45 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
LD+A M S P ++ ++ L+ + K +FDL+ + +M LGI + TYN
Sbjct: 66 LDDAIGLFGGMVK-SRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124
Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
+I+ + + + + M++ G P I TL+S+++ Y + I ++
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLG-YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVE 183
Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
MG + P +T+ +I +
Sbjct: 184 MGYR-----------------------------------PDTITFTTLIHGLFLHNKASE 208
Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
+M RG +PN +TY +V+ K G I ++L ++E + + + ++ +I
Sbjct: 209 AVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVID 268
Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
+ + + LF M+ + P+ IT++++I A L + MI K N
Sbjct: 269 SLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKIN 327
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 98/256 (38%), Gaps = 38/256 (14%)
Query: 88 LAEMSYLGIECSAVT--YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
L M Y G S+ + Y I+ + K ++ F MV+S P IF N ++SA
Sbjct: 36 LCGMCYWGRAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPL-PSIFEFNKLLSA 94
Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
I KM+K +D + S+ + MQ+
Sbjct: 95 ------IAKMKK-----------------------------FDLVISLGEKMQRLGISHN 119
Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
+ TYNI+I F + I KM G +P+ +T SL++ Y I +++
Sbjct: 120 LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 179
Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
Q+ DT F +I + L M +R C P+ +T+ ++ G
Sbjct: 180 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239
Query: 326 MTEAAQNLENKMIAMK 341
+ A NL NKM A K
Sbjct: 240 DIDLAFNLLNKMEAAK 255
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 160/341 (46%), Gaps = 2/341 (0%)
Query: 1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
MV LGK + + L + M + GLKP+V +T + G++G ++EA+ + M
Sbjct: 230 MVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDD-EG 288
Query: 61 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120
C PDV TY++LI + + D +++ +M + VTY T++D + + + ++
Sbjct: 289 CGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVK 348
Query: 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180
+S M E G PD+ T ++ A +GN + + G+ ++ T N L
Sbjct: 349 QFWSEM-EKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICG 407
Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
R D + M+ PT TY + I+ +GK+G E F+KMK +G+ PN
Sbjct: 408 LLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPN 467
Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
+ + + + +KAG + I +++ ++ D+ +N ++ Y + G++++ +L
Sbjct: 468 IVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLS 527
Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
M E C PD I ++I + A + +M MK
Sbjct: 528 EMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK 568
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 168/336 (50%), Gaps = 2/336 (0%)
Query: 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
+L K + +A ++ M+ +G +PS+ Y++L+ G+ +D + +M+++ K
Sbjct: 197 LLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLG-LK 255
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
P+VYT++I I+ + + + +IL M G VTY +ID A+K + +
Sbjct: 256 PNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEV 315
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
F M ++G PD T +++ + ++ +++ ++++++E G D+ T IL +
Sbjct: 316 FEKM-KTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALC 374
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
+AG + + +D M+ + P + TYN +I + ++ E F M+ G+KP +
Sbjct: 375 KAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAY 434
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
TY + Y K+G + +++ + + N + + +AG + ++F +
Sbjct: 435 TYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGL 494
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
K+ VPD++T+ M++ Y+ +G + A L ++M+
Sbjct: 495 KDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM 530
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 142/299 (47%), Gaps = 2/299 (0%)
Query: 20 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
M DG P V +T LV A ++G EAF T++ M+ P+++TY+ LI + H
Sbjct: 354 MEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD-QGILPNLHTYNTLICGLLRVH 412
Query: 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
R D ++ M LG++ +A TY ID YGK+ +F M ++ G P+I
Sbjct: 413 RLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKM-KTKGIAPNIVAC 471
Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
N+ + + +G + ++ + +G+ D T N++ K Y + G D+ ++ M +
Sbjct: 472 NASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMME 531
Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
P V+ N +I T KA +++ + F +MK +KP +TY +L++ K G I +
Sbjct: 532 NGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQE 591
Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
+ + +T FN + + +V ++ M + CVPD T+ T+I
Sbjct: 592 AIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTII 650
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 145/309 (46%), Gaps = 4/309 (1%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
E A +F + S G P V Y L+ AYG+SG +DE F +M S +C+ + T++I
Sbjct: 802 EIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM-STHECEANTITHNI 860
Query: 71 LIKSCTKFHRFD-LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
+I K D ++ MS +A TY +IDG K+ + E + F M++
Sbjct: 861 VISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDY 920
Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
G C P+ N +I+ +G +G + + GV+ D++T ++L G D+
Sbjct: 921 G-CRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDE 979
Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK-HRGMKPNSITYCSLV 248
+++ P VV YN++I GK+ +E+ F +MK RG+ P+ TY SL+
Sbjct: 980 GLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLI 1039
Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
AG++ + I +++ + + + FN +I Y +G E ++ TM
Sbjct: 1040 LNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFS 1099
Query: 309 PDNITFATM 317
P+ T+ +
Sbjct: 1100 PNTGTYEQL 1108
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 155/328 (47%), Gaps = 3/328 (0%)
Query: 13 ASLLFEVMLSD-GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
A LFE D G++P + Y L+ ++ +++ A +KS + C PDV TY+ L
Sbjct: 768 ARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKS-TGCIPDVATYNFL 826
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
+ + K + D + ++ EMS E + +T+N +I G KA ++ + ++
Sbjct: 827 LDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRD 886
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
P T +I SG + + ++ + G + + NIL +G+AG D
Sbjct: 887 FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAAC 946
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
++ M K P + TY+++++ G +++ YFK++K G+ P+ + Y +++
Sbjct: 947 ALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGL 1006
Query: 252 SKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
K+ + + + +++ S I D +N +I G AG VE+ G+++ ++ P+
Sbjct: 1007 GKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPN 1066
Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI 338
TF +I+ Y+ G E A + M+
Sbjct: 1067 VFTFNALIRGYSLSGKPEHAYAVYQTMV 1094
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 1/206 (0%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L K + +A LFE ML G +P+ +Y L++ +G++G D A + M +P
Sbjct: 901 LSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVK-EGVRP 959
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
D+ TYS+L+ R D E+ G+ V YN II+G GK+ + EE F
Sbjct: 960 DLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLF 1019
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
+ M S G PD++T NS+I G +G +E+ K YNE G++ ++ T N L + Y
Sbjct: 1020 NEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSL 1079
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTY 209
+G + +V M F P TY
Sbjct: 1080 SGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/402 (21%), Positives = 161/402 (40%), Gaps = 74/402 (18%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L K + +A +F + GL P Y ++ Y + G +DEA +++M + C+P
Sbjct: 478 LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMME-NGCEP 536
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
DV + LI + K R D K+ M + ++ + VTYNT++ G GK K +E F
Sbjct: 537 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 596
Query: 124 SAMVESG----------------------------------GCHPDIFTLNSMISAYGNS 149
MV+ G GC PD+FT N++I +
Sbjct: 597 EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKN 656
Query: 150 GNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY-DKMRSVMDFM------QKRFF 202
G +++ ++++ + V D TL L +A + D + + +F+ F
Sbjct: 657 GQVKEAMCFFHQMKKL-VYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLF 715
Query: 203 FPTVVTYNI------------------------------VIETFGKAGHIEKMEEYFKKM 232
+ ++ + +I K ++ F+K
Sbjct: 716 WEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKF 775
Query: 233 -KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291
K G++P TY L+ +A +I + QV+++ I D +N ++ AYG++G
Sbjct: 776 TKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGK 835
Query: 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
++++ EL+ M C + IT +I G + A +L
Sbjct: 836 IDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDL 877
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 137/327 (41%), Gaps = 2/327 (0%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
E+ + +F++M +K + Y + + G L +A + M+ + Y+Y+
Sbjct: 135 EEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVL-NAYSYNG 193
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
LI K ++ M G S TY++++ G GK + + + M E+
Sbjct: 194 LIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM-ETL 252
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
G P+++T I G +G I + + + G D+ T +L + A D
Sbjct: 253 GLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCA 312
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
+ V + M+ P VTY +++ F ++ +++++ +M+ G P+ +T+ LV A
Sbjct: 313 KEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDA 372
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
KAG + L + + ++ + +N +I + ++ ELF M+ P
Sbjct: 373 LCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPT 432
Query: 311 NITFATMIQAYNALGMTEAAQNLENKM 337
T+ I Y G + +A KM
Sbjct: 433 AYTYIVFIDYYGKSGDSVSALETFEKM 459
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 3/227 (1%)
Query: 114 KKFEEMESSFSAMVESGGCHPDIFT---LNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD 170
K F + +SSFS G + T N M+ A G +E+M ++ +K D
Sbjct: 93 KSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRD 152
Query: 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230
T + KS G + + M++ F +YN +I K+ + E ++
Sbjct: 153 TNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYR 212
Query: 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
+M G +P+ TY SL+ K I V +L+++E + + F I G+AG
Sbjct: 213 RMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAG 272
Query: 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
+ + E+ M + C PD +T+ +I A + A+ + KM
Sbjct: 273 KINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKM 319
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 154/307 (50%), Gaps = 3/307 (0%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
+FE M G+K S DV+ LV ++ GL +EA +M+ + + Y+ L+ +
Sbjct: 331 IFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEK-KGIRSNTIVYNTLMDAY 389
Query: 76 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
K + + +E + EM G++ SA TYN ++D Y + + + +E+ M E G P+
Sbjct: 390 NKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREM-EDLGLEPN 448
Query: 136 IFTLNSMISAYGNSGNIEKME-KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194
+ + +ISAYG + + M + +G+K + L +Y +G ++K +
Sbjct: 449 VKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASF 508
Query: 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254
+ M K P+V TY V++ F ++G K+ E +K M +K ITY +L+ ++K
Sbjct: 509 EEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQ 568
Query: 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314
GL ++ ++ + + +N +++AY + G K+ +L M + PD+IT+
Sbjct: 569 GLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITY 628
Query: 315 ATMIQAY 321
+TMI A+
Sbjct: 629 STMIYAF 635
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 152/307 (49%), Gaps = 1/307 (0%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
E+A ++ M G++ + VY L+ AY +S ++E +M+ KP TY+I
Sbjct: 361 EEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRD-KGLKPSAATYNI 419
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
L+ + + + D++E +L EM LG+E + +Y +I YG+ KK +M + ++
Sbjct: 420 LMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKV 479
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
G P + ++I AY SG EK + E G+K ++T + ++ R+G K+
Sbjct: 480 GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKL 539
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
+ M + T +TYN +++ F K G + + + G++P+ +TY L++A
Sbjct: 540 MEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNA 599
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
Y++ G K+ +L+++ ++ D+ ++ +I A+ + D ++ M + VPD
Sbjct: 600 YARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPD 659
Query: 311 NITFATM 317
++ +
Sbjct: 660 PRSYEKL 666
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 142/307 (46%), Gaps = 4/307 (1%)
Query: 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKI 87
V +Y A +S S D+A+ M + + PD T +ILI + K R + +I
Sbjct: 273 VRLYNAAISGLSASQRYDDAWEVYEAMDKI-NVYPDNVTCAILITTLRKAGRSAKEVWEI 331
Query: 88 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147
+MS G++ S + ++ + + +E +E G + N+++ AY
Sbjct: 332 FEKMSEKGVKWSQDVFGGLVKSFCD-EGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYN 390
Query: 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207
S +IE++E + E G+K T NIL +Y R D + +++ M+ P V
Sbjct: 391 KSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVK 450
Query: 208 TYNIVIETFGKAGHIEKME-EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
+Y +I +G+ + M + F +MK G+KP+S +Y +L+ AYS +G K + +
Sbjct: 451 SYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEE 510
Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326
+ + + ++ A+ ++GD K+ E++ M IT+ T++ + G+
Sbjct: 511 MCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGL 570
Query: 327 TEAAQNL 333
A+++
Sbjct: 571 YIEARDV 577
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK-MEEY 228
D++ N + YD V + M K +P VT I+I T KAG K + E
Sbjct: 272 DVRLYNAAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEI 331
Query: 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288
F+KM +G+K + + LV ++ GL + I ++E + +T +N ++ AY +
Sbjct: 332 FEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNK 391
Query: 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
+ +E++ LF M+++ P T+ ++ AY
Sbjct: 392 SNHIEEVEGLFTEMRDKGLKPSAATYNILMDAY 424
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 156/325 (48%), Gaps = 2/325 (0%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
+ +A L + M+ G +P++ Y +V+ + G +D AF+ +N M++ + + DV +
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEADVVIF 188
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
+ +I S K+ D + EM GI + VTY+++I ++ + S M+E
Sbjct: 189 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 248
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
+P++ T N++I A+ G + EK +++ + DI T N L + D
Sbjct: 249 KK-INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307
Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
K + + +FM + FP + TYN +I+ F K+ +E E F++M HRG+ +++TY +L+
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367
Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
G + +Q+ + V D ++ ++ G +EK E+F M++
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIK 427
Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
D + TMI+ G + +L
Sbjct: 428 LDIYIYTTMIEGMCKAGKVDDGWDL 452
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 140/304 (46%), Gaps = 2/304 (0%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
AS L M+ + P++ + AL+ A+ + G EA +DM S PD++TY+ L
Sbjct: 238 DASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS-IDPDIFTYNSL 296
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
I R D +++ M TYNT+I G+ K+K+ E+ F M G
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRG- 355
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
D T ++I + G+ + +K + + GV DI T +IL G +K
Sbjct: 356 LVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKAL 415
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
V D+MQK + Y +IE KAG ++ + F + +G+KPN +TY +++S
Sbjct: 416 EVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 475
Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
L+ + ++L++++ + D+ +N +I A+ + GD EL M+ V D
Sbjct: 476 CSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 535
Query: 312 ITFA 315
T
Sbjct: 536 STIG 539
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 143/332 (43%), Gaps = 37/332 (11%)
Query: 8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
K+ A L + M+ G +P +T L+ EA + ++ M C+P++ T
Sbjct: 94 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQPNLVT 152
Query: 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
Y +++ K DL +L +M IE V +NTIID K + ++ + F M
Sbjct: 153 YGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM- 211
Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
E+ G P++ T +S+IS + G +W + L+
Sbjct: 212 ETKGIRPNVVTYSSLISCLCSYG------RWSDASQLLS--------------------- 244
Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
D ++K+ P +VT+N +I+ F K G + E+ M R + P+ TY SL
Sbjct: 245 -------DMIEKKIN-PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 296
Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
++ + + K + + + D D +N +I + ++ VE ELF M R
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 356
Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
V D +T+ T+IQ G + AQ + +M++
Sbjct: 357 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 388
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 2/295 (0%)
Query: 27 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86
PS+ + L+SA + D S M+ + ++YTY+ILI + + L
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLG-ISHNLYTYNILINCFCRRSQISLALA 66
Query: 87 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146
+L +M LG E S VT +++++GY K+ + + MVE G PD T ++I
Sbjct: 67 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM-GYRPDTITFTTLIHGL 125
Query: 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206
+ + G + ++ T ++ + G D ++++ M+ V
Sbjct: 126 FLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADV 185
Query: 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266
V +N +I++ K H++ FK+M+ +G++PN +TY SL+S G +L
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSD 245
Query: 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321
+ + + FN +I A+ + G + +L M +R PD T+ ++I +
Sbjct: 246 MIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGF 300
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 115/281 (40%), Gaps = 36/281 (12%)
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
P ++ ++ L+ + K +FDL+ + +M LGI + TYN +I+ + + + +
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
M++ G P I TL+S+++ Y + I ++ MG +
Sbjct: 68 LGKMMKLG-YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYR-------------- 112
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
P +T+ +I + +M RG +PN +
Sbjct: 113 ---------------------PDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLV 151
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
TY +V+ K G I ++L ++E + + D FN II + + V+ LF M
Sbjct: 152 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 211
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
+ + P+ +T++++I + G A L + MI K N
Sbjct: 212 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 155/354 (43%), Gaps = 38/354 (10%)
Query: 20 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
M++ G +P+V +YT L+ + Q+ +A + +MK PD++ Y+ LI +K
Sbjct: 443 MIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKE-QGIAPDIFCYNSLIIGLSKAK 501
Query: 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
R D L EM G++ +A TY I GY +A +F + M E G P+
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECG-VLPNKVLC 560
Query: 140 NSMISAYGNSGNI-----------------------------------EKMEKWYNEFNL 164
+I+ Y G + + E+ + E
Sbjct: 561 TGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRG 620
Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
G+ D+ + +L + + G K S+ D M + P V+ YN+++ F ++G IEK
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEK 680
Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
+E +M +G+ PN++TYC+++ Y K+G + + + +++ ++ D+ + ++
Sbjct: 681 AKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740
Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
+ DVE+ +F T K + C F +I G TE + N+++
Sbjct: 741 GCCRLNDVERAITIFGTNK-KGCASSTAPFNALINWVFKFGKTELKTEVLNRLM 793
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 158/343 (46%), Gaps = 11/343 (3%)
Query: 1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD 60
++ L K K+ ++A M+ +GLKP+ Y A +S Y ++ A + +M+
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGV 553
Query: 61 CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL--GIECSAVTYNTIIDGYGKAKKFEE 118
V ++ + C K +IE A S + GI A TY +++G K K ++
Sbjct: 554 LPNKVLCTGLINEYCKKGK---VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDD 610
Query: 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178
E F M G PD+F+ +I+ + GN++K ++E G+ ++ N+L
Sbjct: 611 AEEIFREM-RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLL 669
Query: 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
+ R+G +K + ++D M + P VTY +I+ + K+G + + F +MK +G+
Sbjct: 670 GGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLV 729
Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
P+S Y +LV + + + +I + P FN +I+ + G E E+
Sbjct: 730 PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAP-FNALINWVFKFGKTELKTEV 788
Query: 299 FLTMK----ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
+ +R P+++T+ MI G EAA+ L ++M
Sbjct: 789 LNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQM 831
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 160/347 (46%), Gaps = 12/347 (3%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L K + + A +F M G+ P V Y L++ + + G + +A S ++M P
Sbjct: 602 LFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVE-EGLTP 660
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
+V Y++L+ + + +++L EMS G+ +AVTY TIIDGY K+ E F
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF 720
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK---S 180
M + G PD F +++ ++E+ + N G + N L
Sbjct: 721 DEM-KLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGT-NKKGCASSTAPFNALINWVFK 778
Query: 181 YGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
+G+ + + + +MD RF P VTYNI+I+ K G++E +E F +M++ + P
Sbjct: 779 FGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838
Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
ITY SL++ Y K G ++ + + + + D ++ II+A+ + G K L
Sbjct: 839 TVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLV 898
Query: 300 LTMKERHCVPDNI-----TFATMIQAYNALGMTEAAQNLENKMIAMK 341
M ++ V D T ++ + +G E A+ + M+ ++
Sbjct: 899 DQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQ 945
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 145/335 (43%), Gaps = 2/335 (0%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L K + + A L M+S G+ +Y + + G++++A + + M + S P
Sbjct: 322 LLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA-SGLIP 380
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
Y+ LI+ + ++L EM I S TY T++ G + + +
Sbjct: 381 QAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIV 440
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
M+ SG C P++ ++I + + + E G+ DI N L +
Sbjct: 441 KEMIASG-CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
A D+ RS + M + P TY I + +A ++Y K+M+ G+ PN +
Sbjct: 500 AKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVL 559
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
L++ Y K G +++ S R + + ++ D + +++ + V+ E+F M+
Sbjct: 560 CTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMR 619
Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
+ PD ++ +I ++ LG + A ++ ++M+
Sbjct: 620 GKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 7/262 (2%)
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
P YTY +LI K R + + +L EM LG+ TY+ +IDG K + + +
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
MV S G + + + I G +EK + ++ G+ Q L + Y
Sbjct: 335 VHEMV-SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYC 393
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
R + ++ M+KR + TY V++ +G ++ K+M G +PN +
Sbjct: 394 REKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVV 453
Query: 243 TYCSLVSAY---SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
Y +L+ + S+ G M+V L++++ + D +N +I +A +++
Sbjct: 454 IYTTLIKTFLQNSRFGDAMRV---LKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510
Query: 300 LTMKERHCVPDNITFATMIQAY 321
+ M E P+ T+ I Y
Sbjct: 511 VEMVENGLKPNAFTYGAFISGY 532
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 49/295 (16%)
Query: 1 MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
M++ G C+ + E+A L + M GL P+ Y ++ Y +SG L EAF ++MK +
Sbjct: 667 MLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK-L 725
Query: 59 SDCKPDVYTYSILIKSCT----------------------------------KFHRFDLI 84
PD + Y+ L+ C KF + +L
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELK 785
Query: 85 EKILAEM-----SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
++L + G + + VTYN +ID K E + F M ++ P + T
Sbjct: 786 TEVLNRLMDGSFDRFG-KPNDVTYNIMIDYLCKEGNLEAAKELFHQM-QNANLMPTVITY 843
Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
S+++ Y G +M ++E G++ D +++ ++ + GM K ++D M
Sbjct: 844 TSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFA 903
Query: 200 RFFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
+ ++ T ++ F K G +E E+ + M P+S T L++
Sbjct: 904 KNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 8/247 (3%)
Query: 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161
TY+ +IDG K K+ E+ +S M +S G D T + +I N + + +E
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEM-DSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337
Query: 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221
G+ + + G+ +K +++ D M P Y +IE + + +
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397
Query: 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC 281
+ + E +MK R + + TY ++V +G + +I++++ S + +
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457
Query: 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK--MIA 339
+I + Q + MKE+ PD + ++I +G+++A + E + ++
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI-----IGLSKAKRMDEARSFLVE 512
Query: 340 MKENSGK 346
M EN K
Sbjct: 513 MVENGLK 519
>sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825,
chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2
SV=2
Length = 904
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 153/312 (49%), Gaps = 8/312 (2%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A L+ + S G+ ++ +V Y ++G L+EA S + M D PDVY + +
Sbjct: 576 EAEKLYLNLKSSGVVLDRIGFSIVVRMYVKAGSLEEACSVLEIMDEQKDIVPDVYLFRDM 635
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
++ K D ++ + + GI + YN +I+ +A +E+ +F M+ G
Sbjct: 636 LRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMIRYGF 695
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---ADIQTLNILTKSYGRAGMYD 188
P+ T N ++ YG + K+ K NE L+ + D+ + N + +YG+ Y
Sbjct: 696 T-PNTVTFNVLLDVYGKA----KLFKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKDYT 750
Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
M S + MQ F ++ YN +++ +GK +EK K+MK P+ TY ++
Sbjct: 751 NMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMI 810
Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
+ Y + G I +V +L++++ S + D +N +I AYG G VE+ L M+ R+ +
Sbjct: 811 NIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNII 870
Query: 309 PDNITFATMIQA 320
PD +T+ ++ A
Sbjct: 871 PDKVTYTNLVTA 882
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 7/229 (3%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP--DVYTY 68
++ S FE M+ G P+ + L+ YG++ L F +N++ ++ DV +Y
Sbjct: 681 DELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKL----FKKVNELFLLAKRHGVVDVISY 736
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
+ +I + K + + + M + G S YNT++D YGK K+ E+ S M +
Sbjct: 737 NTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKK 796
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
S PD +T N MI+ YG G I+++ E G+ D+ + N L K+YG GM +
Sbjct: 797 STS-GPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVE 855
Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
+ ++ M+ R P VTY ++ + + ++ MK G+
Sbjct: 856 EAVGLVKEMRGRNIIPDKVTYTNLVTALRRNDEFLEAIKWSLWMKQMGI 904
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 140/325 (43%), Gaps = 42/325 (12%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
++A + ++M D ++ ++ + +++AY Q G
Sbjct: 296 DKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQG--------------------------- 328
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
+ +L E IL M G + + YNT+I GYGK K E + F +
Sbjct: 329 ---------KMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNI- 378
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD-K 189
G PD + SMI +G + N E+ + +Y E G K + L L + G D
Sbjct: 379 GLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRCGYKPNSFNLFTLINLQAKYGDRDGA 438
Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
++++ D + +++ I+++ + K G I+ + K H ++ N ++ SLV
Sbjct: 439 IKTIEDMTGIGCQYSSIL--GIILQAYEKVGKIDVVPCVLKGSFHNHIRLNQTSFSSLVM 496
Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF-LTMKERHCV 308
AY K G++ +LR+ + D ++ ++ +I + ++G + +++ M+ +
Sbjct: 497 AYVKHGMVDDCLGLLREKKWRDSAFESHLYHLLICSCKESGQLTDAVKIYNHKMESDEEI 556
Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
+IT +TMI Y +G A+ L
Sbjct: 557 NLHIT-STMIDIYTVMGEFSEAEKL 580
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 117/265 (44%), Gaps = 3/265 (1%)
Query: 67 TYSILIKSCTKFHRFDLIEKILAEM-SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
YS++++ + +D E ++ E+ + + S +NT+I K + F
Sbjct: 176 AYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNVKLASKWFHM 235
Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
M+E G P++ T+ ++ Y + N+E+ E ++ G+ + +++T Y R
Sbjct: 236 MLEFG-VRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRKFGIVCESAYSSMIT-IYTRLR 293
Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
+YDK V+D M++ + + +++ + + G +E E M+ G PN I Y
Sbjct: 294 LYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGFSPNIIAYN 353
Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
+L++ Y K + + ++ N + D + +I +G+A + E+ + +K
Sbjct: 354 TLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQELKRC 413
Query: 306 HCVPDNITFATMIQAYNALGMTEAA 330
P++ T+I G + A
Sbjct: 414 GYKPNSFNLFTLINLQAKYGDRDGA 438
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 133/314 (42%), Gaps = 14/314 (4%)
Query: 35 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL--IKSCTKFHRFDLIEKILAEMS 92
L + + +G +D +S I +S+ C IL ++SC+ + + +
Sbjct: 116 LENLFVNNGEIDVNYSAIKPGQSLEHCN------GILKRLESCSDTNAIKFFDWMRCNGK 169
Query: 93 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152
+G + V Y+ I+ G+ ++++ E + N++I A GN+
Sbjct: 170 LVG---NFVAYSLILRVLGRREEWDRAEDLIKELCGFHEFQKSYQVFNTVIYACTKKGNV 226
Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
+ KW++ GV+ ++ T+ +L Y + ++ M+K F Y+ +
Sbjct: 227 KLASKWFHMMLEFGVRPNVATIGMLMGLYQKNWNVEEAEFAFSHMRK-FGIVCESAYSSM 285
Query: 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272
I + + +K EE MK ++ + +++AYS+ G + +SIL +E +
Sbjct: 286 ITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSMEAAGF 345
Query: 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332
+ +N +I+ YG+ +E LF + PD ++ +MI+ + E A++
Sbjct: 346 SPNIIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKH 405
Query: 333 L--ENKMIAMKENS 344
E K K NS
Sbjct: 406 YYQELKRCGYKPNS 419
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 2/304 (0%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
AS L M+ + P+V ++AL+ A+ + G L EA ++M S PD++TYS L
Sbjct: 309 DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSL 367
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
I R D + + M + VTYNT+I G+ KAK+ +E F M + G
Sbjct: 368 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG- 426
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
+ T ++I + + + + + + GV DI T +IL G +
Sbjct: 427 LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETAL 486
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
V +++Q+ P + TYNI+IE KAG +E + F + +G+KPN +TY +++S +
Sbjct: 487 VVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGF 546
Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
+ GL + D++ R+++ + D+ +N +I A+ + GD EL M+ V D
Sbjct: 547 CRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 606
Query: 312 ITFA 315
T
Sbjct: 607 STIG 610
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 152/325 (46%), Gaps = 2/325 (0%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
+ +A L + M+ G +P + Y +V+ + G +D A S + M+ +P V Y
Sbjct: 201 RASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ-GKIEPGVVIY 259
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
+ +I + + + + EM GI + VTYN++I ++ + S M+E
Sbjct: 260 NTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 319
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
+P++ T +++I A+ G + + EK Y+E + DI T + L + D
Sbjct: 320 RK-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 378
Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
+ + + + M + FP VVTYN +I+ F KA +++ E F++M RG+ N++TY +L+
Sbjct: 379 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438
Query: 249 SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308
+ +A + +Q+ + V+ D ++ ++ G VE +F ++
Sbjct: 439 HGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKME 498
Query: 309 PDNITFATMIQAYNALGMTEAAQNL 333
PD T+ MI+ G E +L
Sbjct: 499 PDIYTYNIMIEGMCKAGKVEDGWDL 523
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 150/329 (45%), Gaps = 2/329 (0%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
+ A LF M+ PS+ ++ L+SA + D S M+++ ++YTYSI
Sbjct: 63 DDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLG-ISHNLYTYSI 121
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
LI + + L +LA+M LG E VT N++++G+ + + S MVE
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM- 180
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
G PD FT N++I + + + G + D+ T I+ + G D
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
S++ M++ P VV YN +I+ ++ F +M ++G++PN +TY SL+
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
G +L + + + F+ +I A+ + G + + +L+ M +R PD
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360
Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
T++++I + + A+++ MI+
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMIS 389
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 154/336 (45%), Gaps = 6/336 (1%)
Query: 7 CKQPEQASLLFEV---MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
C++ Q SL V M+ G +P + +L++ + + +A S + M + +P
Sbjct: 127 CRR-SQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG-YQP 184
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
D +T++ LI + +R ++ M G + VTY +++G K + S
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLL 244
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
M E G P + N++I A N N+ + E + G++ ++ T N L +
Sbjct: 245 KKM-EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 303
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
G + ++ M +R P VVT++ +I+ F K G + + E+ + +M R + P+ T
Sbjct: 304 YGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFT 363
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
Y SL++ + + + + + + D + +N +I + +A V++ ELF M
Sbjct: 364 YSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMS 423
Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
+R V + +T+ T+I + + AQ + +M++
Sbjct: 424 QRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVS 459
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 37/299 (12%)
Query: 45 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
LD+A + DM S P + +S L+ + K ++FDL+ + +M LGI + TY+
Sbjct: 62 LDDAVNLFGDMVK-SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
+I+ + + + + + M++
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMK------------------------------------ 144
Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
+G + DI TLN L + S++ M + + P T+N +I + +
Sbjct: 145 LGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASE 204
Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
+M +G +P+ +TY +V+ K G I S+L+++E + +N II
Sbjct: 205 AVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIID 264
Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
A +V LF M + P+ +T+ ++I+ G A L + MI K N
Sbjct: 265 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 323
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 161/338 (47%), Gaps = 3/338 (0%)
Query: 2 VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
V+ G CK +P+ A L M ++ V +Y ++ + +D+AF N M++
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMET-K 279
Query: 60 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
KPDV+TY+ LI + R+ ++L++M I V +N +ID + K K E
Sbjct: 280 GIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEA 339
Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
E + MV+S C PD+ N++I + +E+ + + E + G+ + T L
Sbjct: 340 EKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIH 399
Query: 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
+ +A D + V M P ++TYNI+++ G++E F+ M+ R MK
Sbjct: 400 GFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKL 459
Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
+ +TY +++ A KAG + + + V + + ++S + + G E+ LF
Sbjct: 460 DIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALF 519
Query: 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
+ MKE +P++ T+ T+I+A G A+ L +M
Sbjct: 520 VEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEM 557
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 148/360 (41%), Gaps = 38/360 (10%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
LF M+ PS+ ++ L+SA + D S M+++ ++YTYSI I
Sbjct: 62 LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLG-ISHNLYTYSIFINYF 120
Query: 76 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
+ + L IL +M LG S VT N++++G+ + E + MVE G PD
Sbjct: 121 CRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG-YQPD 179
Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
T +++ + + G + D+ T + + G D ++++
Sbjct: 180 TVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLN 239
Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
M+K VV YN +I+ K H++ + F KM+ +G+KP+ TY L+S G
Sbjct: 240 KMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYG 299
Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERHCVPD---- 310
+L + ++ D FFN +I A+ + G + + +L+ M K +HC PD
Sbjct: 300 RWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAY 359
Query: 311 -------------------------------NITFATMIQAYNALGMTEAAQNLENKMIA 339
+T+ T+I + + AQ + +M++
Sbjct: 360 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 419
Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 137/313 (43%), Gaps = 38/313 (12%)
Query: 45 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
LD+A DM S P + +S L+ + K ++FDL+ + +M LGI + TY+
Sbjct: 56 LDDAIGLFGDMVK-SRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114
Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
I+ + + + + M++ G P I TLNS+++ + + I + ++
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLG-YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 173
Query: 165 MGVKADIQTLNILTK----------------------------SYG-------RAGMYDK 189
MG + D T L +YG + G D
Sbjct: 174 MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDL 233
Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
++++ M+K VV YN +I+ K H++ + F KM+ +G+KP+ TY L+S
Sbjct: 234 ALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLIS 293
Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM-KERHCV 308
G +L + ++ D FFN +I A+ + G + + +L+ M K +HC
Sbjct: 294 CLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCF 353
Query: 309 PDNITFATMIQAY 321
PD + + T+I+ +
Sbjct: 354 PDVVAYNTLIKGF 366
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 164/345 (47%), Gaps = 9/345 (2%)
Query: 2 VMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS 59
V+ G CK +P+ A L M ++ V +Y+ ++ + + +D+A + +M +
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDN-K 269
Query: 60 DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119
+PDV+TYS LI + R+ ++L++M I + VT+N++ID + K K E
Sbjct: 270 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEA 329
Query: 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179
E F M++ P+I T NS+I+ + +++ ++ + D+ T N L
Sbjct: 330 EKLFDEMIQRS-IDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIN 388
Query: 180 SYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238
+ +A + D M D M +R VTY +I F +A + + FK+M G+
Sbjct: 389 GFCKAKKVVDGMELFRD-MSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVH 447
Query: 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298
PN +TY +L+ K G + K + ++ S + D +N + +AG VE +L
Sbjct: 448 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDL 507
Query: 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
F ++ + PD I + TMI + G+ E A L I MKE+
Sbjct: 508 FCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL---FIKMKED 549
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 161/334 (48%), Gaps = 2/334 (0%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L K + + A LF M + G++P V Y++L+S G +A ++DM P
Sbjct: 250 LCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE-RKINP 308
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
+V T++ LI + K + EK+ EM I+ + VTYN++I+G+ + +E + F
Sbjct: 309 NVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIF 368
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
+ MV S C PD+ T N++I+ + + + + + + + G+ + T L + +
Sbjct: 369 TLMV-SKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQ 427
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
A D + V M P ++TYN +++ K G +EK F+ ++ M+P+ T
Sbjct: 428 ASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYT 487
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
Y + KAG + + + V D +N +IS + + G E+ LF+ MK
Sbjct: 488 YNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMK 547
Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
E +PD+ T+ T+I+A+ G A+ L +M
Sbjct: 548 EDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEM 581
Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 148/328 (45%), Gaps = 37/328 (11%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A L + M+ G +P +T LV Q EA + + M V C+PD+ TY +
Sbjct: 153 EAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM-VVKGCQPDLVTYGAV 211
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
I K DL +L +M IE V Y+T+ID K + ++ + F+ M ++ G
Sbjct: 212 INGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM-DNKG 270
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
PD+FT +S+IS N G +W D R
Sbjct: 271 IRPDVFTYSSLISCLCNYG------RWS----------------------------DASR 296
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
+ D ++++ P VVT+N +I+ F K G + + E+ F +M R + PN +TY SL++ +
Sbjct: 297 LLSDMLERKIN-PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGF 355
Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
+ + I + + D + D +N +I+ + +A V ELF M R V +
Sbjct: 356 CMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNT 415
Query: 312 ITFATMIQAYNALGMTEAAQNLENKMIA 339
+T+ T+I + + AQ + +M++
Sbjct: 416 VTYTTLIHGFFQASDCDNAQMVFKQMVS 443
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 118/299 (39%), Gaps = 37/299 (12%)
Query: 45 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
LDEA +M S P + +S L+ + K +FDL+ +M LG+ + TYN
Sbjct: 46 LDEAVDLFGEMVK-SRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104
Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
+I+ + + + M++ G P I TLNS+++ + + I + ++
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLG-YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVE 163
Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
MG + P VT+ ++ + +
Sbjct: 164 MGYQ-----------------------------------PDTVTFTTLVHGLFQHNKASE 188
Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
++M +G +P+ +TY ++++ K G ++L ++E + D ++ +I
Sbjct: 189 AVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVID 248
Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
+ + V+ LF M + PD T++++I G A L + M+ K N
Sbjct: 249 SLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKIN 307
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 101/282 (35%), Gaps = 71/282 (25%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A LF+ M+ + P++ Y +L++ + LDEA M S DC PDV TY+ L
Sbjct: 328 EAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS-KDCLPDVVTYNTL 386
Query: 72 IKS-----------------------------CTKFHRF------DLIEKILAEMSYLGI 96
I T H F D + + +M G+
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446
Query: 97 ECSAVTYNTIIDGYGKAKKFEEMESSF------------------------SAMVESG-- 130
+ +TYNT++DG K K E+ F + VE G
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWD 506
Query: 131 --------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
G PD+ N+MIS + G E+ + + G D T N L +++
Sbjct: 507 LFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHL 566
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
R G ++ M+ F TY +V + G ++K
Sbjct: 567 RDGDKAASAELIKEMRSCRFAGDASTYGLVTDML-HDGRLDK 607
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 146/334 (43%), Gaps = 37/334 (11%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L K KQ + A L M DG+ P V Y +L+S SG +A ++ M + P
Sbjct: 196 LCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTK-REIYP 254
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
DV+T++ LI +C K R E+ EM ++ VTY+ +I G + +E E F
Sbjct: 255 DVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMF 314
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
MV S GC PD+ T + +I+ Y S +E K + E
Sbjct: 315 GFMV-SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCE---------------------- 351
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
M +R VTY I+I+ + +AG + EE F++M G+ PN IT
Sbjct: 352 -------------MSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIIT 398
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
Y L+ G I K IL ++ + + D +N II +AG+V +++ ++
Sbjct: 399 YNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLN 458
Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
+ +PD T+ TM+ G+ A L KM
Sbjct: 459 CQGLMPDIWTYTTMMLGLYKKGLRREADALFRKM 492
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 148/331 (44%), Gaps = 3/331 (0%)
Query: 8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
K + L F ++ L PS+ ++ L+SA + D M+ + ++ T
Sbjct: 61 KLDDSLDLFFHMVQCRPL-PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLG-IPHNLCT 118
Query: 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
+IL+ + + L L +M LG E S VT+ ++++G+ + + + F MV
Sbjct: 119 CNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMV 178
Query: 128 ESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187
G P++ N++I S ++ N G+ D+ T N L +G +
Sbjct: 179 GMGY-KPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRW 237
Query: 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247
++ M KR +P V T+N +I+ K G + + EE++++M R + P+ +TY L
Sbjct: 238 SDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLL 297
Query: 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
+ + + + + + + D ++ +I+ Y ++ VE +LF M +R
Sbjct: 298 IYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGV 357
Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMI 338
V + +T+ +IQ Y G A+ + +M+
Sbjct: 358 VRNTVTYTILIQGYCRAGKLNVAEEIFRRMV 388
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/277 (19%), Positives = 112/277 (40%), Gaps = 36/277 (12%)
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
P + +S L+ + +K ++D++ + +M LGI + T N +++ + + + S
Sbjct: 79 PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
M++ G P I T S+++ + + +++ MG K
Sbjct: 139 LGKMIKLGH-EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYK-------------- 183
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
P VV YN +I+ K+ ++ + +M+ G+ P+ +
Sbjct: 184 ---------------------PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVV 222
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
TY SL+S +G ++ + ++ D FN +I A + G V + E + M
Sbjct: 223 TYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEM 282
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
R PD +T++ +I + A+ + M++
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVS 319
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 14/232 (6%)
Query: 115 KFEEMESSFSAMVESGGCHP--DIFTLNSMISAYGNSGNIEKMEKW------YNEFNLMG 166
+F +++ S C P I + ++SA I KM+K+ + + ++G
Sbjct: 58 RFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSA------ISKMKKYDVVIYLWEQMQMLG 111
Query: 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226
+ ++ T NIL + R S + M K P++VT+ ++ F + +
Sbjct: 112 IPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDAL 171
Query: 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286
F +M G KPN + Y +++ K+ + +L ++E + D +N +IS
Sbjct: 172 YMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGL 231
Query: 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
+G + M +R PD TF +I A G A+ +MI
Sbjct: 232 CSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMI 283
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 145/291 (49%), Gaps = 2/291 (0%)
Query: 13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
AS L M+ + P+V ++AL+ A+ + G L EA ++M S PD++TYS LI
Sbjct: 312 ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLI 370
Query: 73 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
R D + + M + VTY+T+I G+ KAK+ EE F M + G
Sbjct: 371 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRG-L 429
Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
+ T ++I + + + + + + + +GV +I T NIL + G K
Sbjct: 430 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMV 489
Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
V +++Q+ P + TYNI+IE KAG +E E F + +G+ PN I Y +++S +
Sbjct: 490 VFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFC 549
Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
+ G + DS+L++++ + ++ +N +I A + GD E EL M+
Sbjct: 550 RKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMR 600
Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 102/400 (25%), Positives = 161/400 (40%), Gaps = 72/400 (18%)
Query: 8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT 67
K+ A L + M+ G KP +T L+ EA + ++ M C+PD+ T
Sbjct: 167 KRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ-RGCQPDLVT 225
Query: 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127
Y ++ K DL +L +M IE V YNTIIDG K K ++ + F+ M
Sbjct: 226 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM- 284
Query: 128 ESGGCHPDIFTLNSMIS-----------------------------------AYGNSGNI 152
++ G PD+FT +S+IS A+ G +
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344
Query: 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212
+ EK Y+E + DI T + L + D+ + + + M + FP VVTY+ +
Sbjct: 345 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404
Query: 213 IETFGKAGHIEKMEEYFKKMKHRGM----------------------------------- 237
I+ F KA +E+ E F++M RG+
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464
Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
PN +TY L+ K G + K + ++ S + D +N +I +AG VE E
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE 524
Query: 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
LF + + P+ I + TMI + G E A +L KM
Sbjct: 525 LFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 158/334 (47%), Gaps = 2/334 (0%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L K K + A LF M + G++P V Y++L+S G +A ++DM P
Sbjct: 268 LCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 326
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
+V T+S LI + K + EK+ EM I+ TY+++I+G+ + +E + F
Sbjct: 327 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 386
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
M+ S C P++ T +++I + + +E+ + + E + G+ + T L + +
Sbjct: 387 ELMI-SKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 445
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
A D + V M P ++TYNI+++ K G + K F+ ++ M+P+ T
Sbjct: 446 ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYT 505
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
Y ++ KAG + + + V + +N +IS + + G E+ L MK
Sbjct: 506 YNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMK 565
Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
E +P++ T+ T+I+A G EA+ L +M
Sbjct: 566 EDGPLPNSGTYNTLIRARLRDGDREASAELIKEM 599
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 149/329 (45%), Gaps = 2/329 (0%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
+ A LF M+ PS+ + L+SA + + S M+++ D+YTYSI
Sbjct: 65 DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLG-ISHDLYTYSI 123
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
I + + L +LA+M LG E VT +++++GY +K+ + + MVE
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM- 182
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
G PD FT ++I + ++ G + D+ T + + G D
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
S++ M+K VV YN +I+ K H++ F +M ++G++P+ TY SL+S
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
G +L + + + F+ +I A+ + G + + +L+ M +R PD
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362
Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIA 339
T++++I + + A+++ MI+
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMIS 391
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 115/267 (43%), Gaps = 37/267 (13%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A L++ M+ + P + Y++L++ + LDEA M S DC P+V TYS L
Sbjct: 346 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS-KDCFPNVVTYSTL 404
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
IK K R + ++ EMS G+ + VTY T+I G+ +A+ + + F MV S G
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV-SVG 463
Query: 132 CHP-----------------------------------DIFTLNSMISAYGNSGNIEKME 156
HP DI+T N MI +G +E
Sbjct: 464 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGW 523
Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
+ + +L GV ++ N + + R G ++ S++ M++ P TYN +I
Sbjct: 524 ELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRAR 583
Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSIT 243
+ G E E K+M+ G ++ T
Sbjct: 584 LRDGDREASAELIKEMRSCGFAGDAST 610
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 1/245 (0%)
Query: 99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
S V +N ++ K KFE + S +++ G D++T + I+ + +
Sbjct: 82 SIVEFNKLLSAVAKMNKFE-LVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
+ +G + DI TL+ L Y + +++D M + + P T+ +I
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
+ +M RG +P+ +TY ++V+ K G I S+L+++E + D
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260
Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
+N II + ++ LF M + PD T++++I G A L + MI
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320
Query: 339 AMKEN 343
K N
Sbjct: 321 ERKIN 325
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 157/331 (47%), Gaps = 4/331 (1%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY-S 69
++A + ML G+ P V Y ++++A ++ +D+A +N M + PD TY S
Sbjct: 213 DKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVK-NGVMPDCMTYNS 271
Query: 70 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129
IL C+ + I L +M G+E VTY+ ++D K + E F +M +
Sbjct: 272 ILHGYCSSGQPKEAI-GFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330
Query: 130 GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189
G P+I T +++ Y G + +M + G+ D +IL +Y + G D+
Sbjct: 331 G-LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQ 389
Query: 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249
V M+++ P VTY VI K+G +E YF++M G+ P +I Y SL+
Sbjct: 390 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 449
Query: 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309
+ + ++ ++ + + L+T FFN II ++ + G V + +LF M P
Sbjct: 450 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509
Query: 310 DNITFATMIQAYNALGMTEAAQNLENKMIAM 340
+ IT+ T+I Y G + A L + M+++
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540
Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 136/300 (45%), Gaps = 5/300 (1%)
Query: 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
G+C + + +F+ M GLKP + Y L+ Y G L E + D+ + PD
Sbjct: 315 GRCMEARK---IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL-DLMVRNGIHPD 370
Query: 65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
Y +SILI + K + D + ++M G+ +AVTY +I K+ + E+ F
Sbjct: 371 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 430
Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
M++ G P NS+I E+ E+ E G+ + N + S+ +
Sbjct: 431 QMIDEG-LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 489
Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
G + + + M + P V+TYN +I + AG +++ + M G+KPN++TY
Sbjct: 490 GRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549
Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304
+L++ Y K + + +++E+S V D +N I+ Q EL++ + E
Sbjct: 550 STLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITE 609
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 160/343 (46%), Gaps = 7/343 (2%)
Query: 2 VMLGKCKQPEQASLLFEVM---LSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
+++G C + + L F + + G + +T L+ +A + +
Sbjct: 92 ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTE 151
Query: 59 SDCKPDVYTYSILIKS-CTKFHRFDLIE--KILAEMSYLGIECSAVTYNTIIDGYGKAKK 115
C P+V++Y+IL+K C + + +E ++A+ G V+Y T+I+G+ K
Sbjct: 152 LGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGD 211
Query: 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175
++ S++ M++ G PD+ T NS+I+A + ++K + N GV D T N
Sbjct: 212 SDKAYSTYHEMLDR-GILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYN 270
Query: 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235
+ Y +G + + M+ P VVTY+++++ K G + + F M R
Sbjct: 271 SILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKR 330
Query: 236 GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295
G+KP TY +L+ Y+ G ++++ +L + + + D F+ +I AY + G V++
Sbjct: 331 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQA 390
Query: 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
+F M+++ P+ +T+ +I G E A +MI
Sbjct: 391 MLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 158/366 (43%), Gaps = 39/366 (10%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L K + ++A + M+ +G+ P Y +++ Y SG EA + M+S +P
Sbjct: 241 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS-DGVEP 299
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
DV TYS+L+ K R KI M+ G++ TY T++ GY EM
Sbjct: 300 DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLL 359
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT----LNILTK 179
MV +G HPD + + +I AY G +++ +++ G+ + T + IL K
Sbjct: 360 DLMVRNG-IHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCK 418
Query: 180 SYGRA--------------------------------GMYDKMRSVMDFMQKRFFFPTVV 207
S GR +++ ++ M R +
Sbjct: 419 S-GRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 477
Query: 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267
+N +I++ K G + + E+ F+ M G+KPN ITY +L++ Y AG + + +L +
Sbjct: 478 FFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGM 537
Query: 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327
+ + +T ++ +I+ Y + +E LF M+ PD IT+ ++Q T
Sbjct: 538 VSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRT 597
Query: 328 EAAQNL 333
AA+ L
Sbjct: 598 AAAKEL 603
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 143/319 (44%), Gaps = 4/319 (1%)
Query: 22 SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHR 80
+D + P + Y L+ ++G LD F+ + ++ + D ++ L+K C
Sbjct: 80 ADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIK-KGFRVDAIAFTPLLKGLCADKRT 138
Query: 81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE--SGGCHPDIFT 138
D ++ +L M+ LG + +YN ++ G + +E M + GG PD+ +
Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 198
Query: 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198
++I+ + G+ +K Y+E G+ D+ T N + + +A DK V++ M
Sbjct: 199 YTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV 258
Query: 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258
K P +TYN ++ + +G ++ + KKM+ G++P+ +TY L+ K G M
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318
Query: 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318
+ I + + + + ++ Y G + +M L M PD+ F+ +I
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378
Query: 319 QAYNALGMTEAAQNLENKM 337
AY G + A + +KM
Sbjct: 379 CAYAKQGKVDQAMLVFSKM 397
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 137/303 (45%), Gaps = 2/303 (0%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L C + E+A L ML G+ + + +++ ++ + G + E+ M + KP
Sbjct: 451 LCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG-VKP 509
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
+V TY+ LI + D K+L+ M +G++ + VTY+T+I+GY K + E+ F
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
M ES G PDI T N ++ + ++ Y G + ++ T NI+ +
Sbjct: 570 KEM-ESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK 628
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
+ D + + T+NI+I+ K G ++ ++ F G+ PN T
Sbjct: 629 NKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWT 688
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
Y + GL+ ++D + +E++ +D+ N I+ Q G++ + G +
Sbjct: 689 YRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMID 748
Query: 304 ERH 306
E+H
Sbjct: 749 EKH 751
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 152/336 (45%), Gaps = 11/336 (3%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
+QA L+F M GL P+ Y A++ +SG +++A M P Y+
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGLSPGNIVYNS 446
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
LI ++++ E+++ EM GI + + +N+IID + K + E E F MV G
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
P++ T N++I+ Y +G +++ K + +G+K + T + L Y + +
Sbjct: 507 -VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
+ M+ P ++TYNI+++ + +E + ++ G + TY ++
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625
Query: 251 YSKAGLIMKVDSILRQVEN---SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307
K L D L+ +N D+ L+ FN +I A + G ++ +LF+
Sbjct: 626 LCKNKL---TDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGL 682
Query: 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343
VP+ T+ M + G+ E L+ ++M++N
Sbjct: 683 VPNYWTYRLMAENIIGQGLLE---ELDQLFLSMEDN 715
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 142/338 (42%), Gaps = 16/338 (4%)
Query: 11 EQASLLFEVMLSDGLKPSV-DVYTALVSAYGQSGLLDEAFSTINDMK--SVSDCKPDVYT 67
E A +F+ +L G S+ + AL S A S N M + PD+ T
Sbjct: 32 EDARHVFDELLRRGRGASIYGLNRALADVARDSPA--AAVSRYNRMARAGADEVTPDLCT 89
Query: 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAM 126
Y ILI C + R DL L + G A+ + ++ G K+ + M+ M
Sbjct: 90 YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 149
Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GVKADIQTLNILTKS 180
E G C P++F+ N ++ + + ++ ++M G D+ + +
Sbjct: 150 TELG-CIPNVFSYNILLKGLCDE---NRSQEALELLHMMADDRGGGSPPDVVSYTTVING 205
Query: 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240
+ + G DK S M R P VVTYN +I KA ++K E M G+ P+
Sbjct: 206 FFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPD 265
Query: 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300
+TY S++ Y +G + L+++ + V D ++ ++ + G + ++F
Sbjct: 266 CMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFD 325
Query: 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
+M +R P+ T+ T++Q Y G L + M+
Sbjct: 326 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMV 363
>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580,
chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2
SV=1
Length = 711
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 135/287 (47%), Gaps = 2/287 (0%)
Query: 53 NDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112
N +KS S + Y++ +KS +F LIE++ EM G+E +TY+TII +
Sbjct: 174 NWVKSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYSTIITCAKR 233
Query: 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172
+ + F M ++G PD T ++++ Y SG +E++ Y G K D
Sbjct: 234 CNLYNKAIEWFERMYKTG-LMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAI 292
Query: 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232
++L K +G AG YD +R V+ M+ P VV YN ++E G+AG F +M
Sbjct: 293 AFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEM 352
Query: 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
G+ PN T +LV Y KA + +++ +D +N +++ G
Sbjct: 353 LEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLE 412
Query: 293 EKMGELFLTMKER-HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
E+ LF MKE C PDN ++ M+ Y + G E A L +M+
Sbjct: 413 EEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEML 459
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 159/348 (45%), Gaps = 48/348 (13%)
Query: 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV 65
+C +A FE M GL P Y+A++ Y +SG ++E S + + + KPD
Sbjct: 233 RCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLS-LYERAVATGWKPDA 291
Query: 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
+S+L K + +D I +L EM + ++ + V YNT+++ G+A K S F+
Sbjct: 292 IAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNE 351
Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
M+E+ G P+ TL +++ YG + +W + +Q
Sbjct: 352 MLEA-GLTPNEKTLTALVKIYGKA-------RW--------ARDALQ------------- 382
Query: 186 MYDKMRS---VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNS 241
++++M++ MDF + YN ++ G E+ E F MK +P++
Sbjct: 383 LWEEMKAKKWPMDF----------ILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDN 432
Query: 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301
+Y ++++ Y G K + ++ + V ++ C++ G+A ++ + +F
Sbjct: 433 FSYTAMLNIYGSGGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDL 492
Query: 302 MKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349
+R PD+ ++ + + + E++++ E K++A E + KKL+
Sbjct: 493 SIKRGVKPDDRLCGCLL---SVMALCESSEDAE-KVMACLERANKKLV 536
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 83/176 (47%)
Query: 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225
GV+ D T + + R +Y+K + M K P VTY+ +++ + K+G +E++
Sbjct: 216 GVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEV 275
Query: 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285
+++ G KP++I + L + +AG + +L+++++ DV + +N ++ A
Sbjct: 276 LSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEA 335
Query: 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
G+AG LF M E P+ T +++ Y A L +M A K
Sbjct: 336 MGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKK 391
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 36/189 (19%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS--------------------- 42
+G+ +P A LF ML GL P+ TALV YG++
Sbjct: 336 MGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMD 395
Query: 43 --------------GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88
GL +EA NDMK C+PD ++Y+ ++ + + ++
Sbjct: 396 FILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELF 455
Query: 89 AEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148
EM G++ + + ++ GKAK+ +++ F ++ G PD ++S
Sbjct: 456 EEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKR-GVKPDDRLCGCLLSVMAL 514
Query: 149 SGNIEKMEK 157
+ E EK
Sbjct: 515 CESSEDAEK 523
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/140 (18%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Query: 187 YDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
+ K + ++++ + FP + YN+ +++ + +EE +M G++ ++ITY
Sbjct: 166 WQKTHTFFNWVKSKSLFPMETIFYNVTMKSLRFGRQFQLIEEMALEMVKDGVELDNITYS 225
Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
++++ + L K ++ + ++ D ++ I+ Y ++G VE++ L+
Sbjct: 226 TIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVAT 285
Query: 306 HCVPDNITFATMIQAYNALG 325
PD I F+ + + + G
Sbjct: 286 GWKPDAIAFSVLGKMFGEAG 305
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 169/362 (46%), Gaps = 37/362 (10%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
++A+ + E+M G+ P+ YT ++ AYG++G DEA MK + C P+ TY+
Sbjct: 368 KEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKE-AGCVPNTCTYNA 426
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
++ K R + + K+L +M G + T+NT++ G + + F M +S
Sbjct: 427 VLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREM-KSC 485
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
G PD T N++ISAYG G+ K Y E G A + T N L + R G +
Sbjct: 486 GFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSG 545
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGH---IEKMEEYFKK---------------- 231
+V+ M+ + F PT +Y+++++ + K G+ IE++E K+
Sbjct: 546 ENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLA 605
Query: 232 ----------------MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
K G KP+ + + S++S +++ + + + IL + + D
Sbjct: 606 NFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPD 665
Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335
+N ++ Y + G+ K E+ T+++ PD +++ T+I+ + G+ + A + +
Sbjct: 666 LVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLS 725
Query: 336 KM 337
+M
Sbjct: 726 EM 727
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 148/357 (41%), Gaps = 35/357 (9%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
+A F + S G +P Y AL+ +G++G+ EA S + +M+ S C D TY+
Sbjct: 298 REAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENS-CPADSVTYNE 356
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
L+ + + ++ M+ G+ +A+TY T+ID YGKA K +E F +M E+G
Sbjct: 357 LVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAG 416
Query: 131 ----------------------------------GCHPDIFTLNSMISAYGNSGNIEKME 156
GC P+ T N+M++ GN G + +
Sbjct: 417 CVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVN 476
Query: 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216
+ + E G + D T N L +YGR G + M + F V TYN ++
Sbjct: 477 RVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNAL 536
Query: 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276
+ G E MK +G KP +Y ++ Y+K G + ++ I +++ +
Sbjct: 537 ARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSW 596
Query: 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
++ A + + F K+ PD + F +M+ + M + A+ +
Sbjct: 597 MLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGI 653
Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 151/326 (46%), Gaps = 4/326 (1%)
Query: 13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
A LL ++ L + L V YT ++ AY ++G ++A MK + P + TY++++
Sbjct: 195 AKLLDKIPLQEYLL-DVRAYTTILHAYSRTGKYEKAIDLFERMKEMGP-SPTLVTYNVIL 252
Query: 73 KSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
K R + I +L EM G++ T +T++ + E + F A ++S G
Sbjct: 253 DVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFF-AELKSCG 311
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
P T N+++ +G +G + E AD T N L +Y RAG +
Sbjct: 312 YEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAA 371
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
V++ M K+ P +TY VI+ +GKAG ++ + F MK G PN+ TY +++S
Sbjct: 372 GVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLL 431
Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
K ++ +L ++++ + +N +++ G G + + +F MK PD
Sbjct: 432 GKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDR 491
Query: 312 ITFATMIQAYNALGMTEAAQNLENKM 337
TF T+I AY G A + +M
Sbjct: 492 DTFNTLISAYGRCGSEVDASKMYGEM 517
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 154/321 (47%), Gaps = 7/321 (2%)
Query: 11 EQASLLFEVML----SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
E+A LFE ++ S LK V V G+ A + + D + + DV
Sbjct: 153 ERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSVA-AKLLDKIPLQEYLLDVR 211
Query: 67 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSA 125
Y+ ++ + ++ +++ + M +G + VTYN I+D +GK + + ++
Sbjct: 212 AYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDE 271
Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
M S G D FT ++++SA G + + ++++ E G + T N L + +G+AG
Sbjct: 272 M-RSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAG 330
Query: 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245
+Y + SV+ M++ VTYN ++ + +AG ++ + M +G+ PN+ITY
Sbjct: 331 VYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYT 390
Query: 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305
+++ AY KAG + + ++ + + +T +N ++S G+ +M ++ MK
Sbjct: 391 TVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSN 450
Query: 306 HCVPDNITFATMIQAYNALGM 326
C P+ T+ TM+ GM
Sbjct: 451 GCSPNRATWNTMLALCGNKGM 471
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 149/324 (45%), Gaps = 6/324 (1%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV--SDCKPDVYTYSILIK 73
+F M S G +P D + L+SAYG+ G +A +M + C V TY+ L+
Sbjct: 478 VFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNAC---VTTYNALLN 534
Query: 74 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133
+ + + E ++++M G + + +Y+ ++ Y K + +E ++ G
Sbjct: 535 ALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIER-IENRIKEGQIF 593
Query: 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193
P L +++ A + E+ + F G K D+ N + + R MYD+ +
Sbjct: 594 PSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGI 653
Query: 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253
++ +++ P +VTYN +++ + + G K EE K ++ +KP+ ++Y +++ + +
Sbjct: 654 LESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCR 713
Query: 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313
GL+ + +L ++ + +N +S Y G ++ ++ M + C P+ +T
Sbjct: 714 RGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELT 773
Query: 314 FATMIQAYNALGMTEAAQNLENKM 337
F ++ Y G A + +K+
Sbjct: 774 FKMVVDGYCRAGKYSEAMDFVSKI 797
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 132/286 (46%), Gaps = 2/286 (0%)
Query: 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD 64
G+C AS ++ M G V Y AL++A + G + I+DMKS KP
Sbjct: 502 GRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKS-KGFKPT 560
Query: 65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124
+YS++++ K + IE+I + I S + T++ K + E +F+
Sbjct: 561 ETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFT 620
Query: 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184
+ + G PD+ NSM+S + + ++ E G+ D+ T N L Y R
Sbjct: 621 -LFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRR 679
Query: 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244
G K ++ ++K P +V+YN VI+ F + G +++ +M RG++P TY
Sbjct: 680 GECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTY 739
Query: 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290
+ VS Y+ G+ +++ ++ + +D + F ++ Y +AG
Sbjct: 740 NTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 785
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 159/321 (49%), Gaps = 4/321 (1%)
Query: 17 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76
F M+ G +P V YT L++ ++G + +A N M S PD + L+
Sbjct: 137 FFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIR-SGVSPDNKACAALVVGLC 195
Query: 77 KFHRFDLIEKILAE-MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
+ DL +++AE + ++ S V YN +I G+ KA + E+ E+ S M + G C PD
Sbjct: 196 HARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIG-CEPD 254
Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
+ T N +++ Y ++ +++ E E G++ D + N L K + R DK + M
Sbjct: 255 LVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMV 314
Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
+ F VV+Y+ +IETF +A + K F++M+ +GM N +TY SL+ A+ + G
Sbjct: 315 KEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREG 374
Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
+L Q+ + D F+ I+ ++G+V+K +F M E PD I++
Sbjct: 375 NSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYN 434
Query: 316 TMIQAYNALG-MTEAAQNLEN 335
++I G +TEA + E+
Sbjct: 435 SLISGLCRSGRVTEAIKLFED 455
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 152/323 (47%), Gaps = 7/323 (2%)
Query: 2 VMLGKCKQPEQASLLFEVML----SDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKS 57
+++G C + L +E++ S +K S VY AL+S + ++G +++A + + M
Sbjct: 190 LVVGLC-HARKVDLAYEMVAEEIKSARVKLSTVVYNALISGFCKAGRIEKAEALKSYMSK 248
Query: 58 VSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117
+ C+PD+ TY++L+ + E ++AEM GI+ A +YN ++ + + +
Sbjct: 249 IG-CEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPD 307
Query: 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177
+ + +E G D+ + +++I + + N K + + E G+ ++ T L
Sbjct: 308 KCYNFMVKEMEPRG-FCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSL 366
Query: 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237
K++ R G + ++D M + P + Y +++ K+G+++K F M +
Sbjct: 367 IKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEI 426
Query: 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297
P++I+Y SL+S ++G + + + ++ + D F II + + +
Sbjct: 427 TPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYK 486
Query: 298 LFLTMKERHCVPDNITFATMIQA 320
++ M ++ D T+I+A
Sbjct: 487 VWDQMMDKGFTLDRDVSDTLIKA 509
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 132/308 (42%), Gaps = 38/308 (12%)
Query: 32 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91
Y + ++ +SG++D A ++M+ S + + Y+ I + RF+L E I +M
Sbjct: 12 YRSRIANLVKSGMIDNAVQVFDEMRH-SSYRVFSFDYNRFIGVLVRESRFELAEAIYWDM 70
Query: 92 SYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN 151
+G TY+ I G K KKF+ +++ S M E+ G PDI+ N +
Sbjct: 71 KPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDM-ETLGFIPDIWAFNVYLDLLCRENK 129
Query: 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNI 211
V +QT + + GR P VV+Y I
Sbjct: 130 ---------------VGFAVQTFFCMVQR-GRE-------------------PDVVSYTI 154
Query: 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI-MKVDSILRQVENS 270
+I +AG + E + M G+ P++ +LV A + + + + +++++
Sbjct: 155 LINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLAYEMVAEEIKSA 214
Query: 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330
V L T +N +IS + +AG +EK L M + C PD +T+ ++ Y M + A
Sbjct: 215 RVKLSTVVYNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRA 274
Query: 331 QNLENKMI 338
+ + +M+
Sbjct: 275 EGVMAEMV 282
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 119/274 (43%), Gaps = 4/274 (1%)
Query: 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSA 125
+TYS I K +FDLI+ +L++M LG +N +D + K +F
Sbjct: 80 FTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFC 139
Query: 126 MVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185
MV+ G PD+ + +I+ +G + + +N GV D + L A
Sbjct: 140 MVQRGR-EPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHAR 198
Query: 186 MYDKMRSVM--DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
D ++ + R TVV YN +I F KAG IEK E M G +P+ +T
Sbjct: 199 KVDLAYEMVAEEIKSARVKLSTVV-YNALISGFCKAGRIEKAEALKSYMSKIGCEPDLVT 257
Query: 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303
Y L++ Y ++ + + ++ ++ S + LD +N ++ + + +K +
Sbjct: 258 YNVLLNYYYDNNMLKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEM 317
Query: 304 ERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
E D ++++T+I+ + T A L +M
Sbjct: 318 EPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEM 351
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 157/335 (46%), Gaps = 4/335 (1%)
Query: 5 GKCKQPE--QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
G C++ A L + M+ G KP + Y A++ + ++ +++AF +++ +
Sbjct: 164 GFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIER-KGIR 222
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
P+V TY+ L+ R+ ++L++M I + +TY+ ++D + K K E +
Sbjct: 223 PNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKEL 282
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
F MV PDI T +S+I+ I++ + ++ G AD+ + N L +
Sbjct: 283 FEEMVRMS-IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC 341
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
+A + + M +R VTYN +I+ F +AG ++K +E+F +M G+ P+
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 401
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
TY L+ G + K I ++ ++ LD + +I + G VE+ LF ++
Sbjct: 402 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 461
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337
+ PD +T+ TM+ G+ + L KM
Sbjct: 462 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 153/327 (46%), Gaps = 2/327 (0%)
Query: 7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY 66
C Q A + ML G +P +LV+ + + + +A S ++ M + KPD+
Sbjct: 133 CFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG-YKPDIV 191
Query: 67 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126
Y+ +I S K R + E+ GI + VTY +++G + ++ + S M
Sbjct: 192 AYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM 251
Query: 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186
++ P++ T ++++ A+ +G + + ++ + E M + DI T + L
Sbjct: 252 IKKK-ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310
Query: 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246
D+ + D M + VV+YN +I F KA +E + F++M RG+ N++TY +
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370
Query: 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306
L+ + +AG + K Q++ + D +N ++ G++EK +F M++R
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430
Query: 307 CVPDNITFATMIQAYNALGMTEAAQNL 333
D +T+ T+I+ G E A +L
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSL 457
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 154/316 (48%), Gaps = 10/316 (3%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDM--KSVSDC 61
L K K+ A F+ + G++P+V YTALV+ S +A ++DM K ++
Sbjct: 200 LCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKIT-- 257
Query: 62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121
P+V TYS L+ + K + +++ EM + I+ VTY+++I+G + +E
Sbjct: 258 -PNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ 316
Query: 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181
F MV S GC D+ + N++I+ + + +E K + E + G+ ++ T N L + +
Sbjct: 317 MFDLMV-SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375
Query: 182 GRAGMYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
+AG DK + F Q FF P + TYNI++ G +EK F+ M+ R M
Sbjct: 376 FQAGDVDKAQEF--FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433
Query: 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299
+ +TY +++ K G + + S+ + + D + ++S G + ++ L+
Sbjct: 434 DIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALY 493
Query: 300 LTMKERHCVPDNITFA 315
MK+ + ++ T +
Sbjct: 494 TKMKQEGLMKNDCTLS 509
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/305 (19%), Positives = 132/305 (43%), Gaps = 8/305 (2%)
Query: 45 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN 104
L++A +DM S P + ++ L+ + K ++D++ + +M LGI T+N
Sbjct: 66 LNDAIDLFSDMVK-SRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124
Query: 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164
+I+ + + S M++ G PD T+ S+++ + + ++
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGY-EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 183
Query: 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK 224
+G K DI N + S + + ++++ P VVTY ++ +
Sbjct: 184 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243
Query: 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284
M + + PN ITY +L+ A+ K G +++ + ++ + D ++ +I+
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLIN 303
Query: 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344
+++ ++F M + C+ D +++ T+I + A+ +E+ M +E S
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC------KAKRVEDGMKLFREMS 357
Query: 345 GKKLI 349
+ L+
Sbjct: 358 QRGLV 362
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 147/300 (49%), Gaps = 2/300 (0%)
Query: 26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85
+P V Y AL++ + + +D+A ++ M+S D PD TY+I+I S + DL
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRS-KDFSPDTVTYNIMIGSLCSRGKLDLAL 213
Query: 86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145
K+L ++ + + +TY +I+ +E M+ S G PD+FT N++I
Sbjct: 214 KVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEML-SRGLKPDMFTYNTIIRG 272
Query: 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205
G +++ + L G + D+ + NIL ++ G +++ +M M P
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332
Query: 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265
VVTY+I+I T + G IE+ K MK +G+ P++ +Y L++A+ + G + L
Sbjct: 333 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 392
Query: 266 QVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325
+ + + D +N +++ + G ++ E+F + E C P++ ++ TM A + G
Sbjct: 393 TMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 149/320 (46%), Gaps = 2/320 (0%)
Query: 20 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79
+LSD +P+V YT L+ A G +DEA +++M S KPD++TY+ +I+ K
Sbjct: 219 LLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS-RGLKPDMFTYNTIIRGMCKEG 277
Query: 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139
D +++ + G E ++YN ++ K+EE E + M S C P++ T
Sbjct: 278 MVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMF-SEKCDPNVVTY 336
Query: 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199
+ +I+ G IE+ G+ D + + L ++ R G D ++ M
Sbjct: 337 SILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396
Query: 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259
P +V YN V+ T K G ++ E F K+ G PNS +Y ++ SA +G ++
Sbjct: 397 DGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIR 456
Query: 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319
++ ++ ++ + D +N +IS + G V++ EL + M+ P +T+ ++
Sbjct: 457 ALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLL 516
Query: 320 AYNALGMTEAAQNLENKMIA 339
+ E A N+ M+
Sbjct: 517 GFCKAHRIEDAINVLESMVG 536
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/341 (22%), Positives = 158/341 (46%), Gaps = 5/341 (1%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
++A L + MLS GLKP + Y ++ + G++D AF + +++ + C+PDV +Y+I
Sbjct: 245 DEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLE-LKGCEPDVISYNI 303
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
L+++ +++ EK++ +M + + VTY+ +I + K EE + M E G
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 363
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
PD ++ + +I+A+ G ++ ++ G DI N + + + G D+
Sbjct: 364 -LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQA 422
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
+ + + P +YN + +G + +M G+ P+ ITY S++S
Sbjct: 423 LEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISC 482
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
+ G++ + +L + + + +N ++ + +A +E + +M C P+
Sbjct: 483 LCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPN 542
Query: 311 NITFATMIQAYNALGMTEAAQNLENKMI---AMKENSGKKL 348
T+ +I+ G A L N ++ A+ E S K+L
Sbjct: 543 ETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRL 583
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 145/322 (45%), Gaps = 3/322 (0%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
L E M+ G P V + T L+ + + +A + ++ +PDV+ Y+ LI
Sbjct: 111 LLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG--QPDVFAYNALINGF 168
Query: 76 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
K +R D ++L M VTYN +I K + + ++ S C P
Sbjct: 169 CKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL-SDNCQPT 227
Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
+ T +I A G +++ K +E G+K D+ T N + + + GM D+ ++
Sbjct: 228 VITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVR 287
Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
++ + P V++YNI++ G E+ E+ KM PN +TY L++ + G
Sbjct: 288 NLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDG 347
Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
I + ++L+ ++ + D ++ +I+A+ + G ++ E TM C+PD + +
Sbjct: 348 KIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN 407
Query: 316 TMIQAYNALGMTEAAQNLENKM 337
T++ G + A + K+
Sbjct: 408 TVLATLCKNGKADQALEIFGKL 429
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 120/277 (43%), Gaps = 2/277 (0%)
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
PDV + LIK +++ + G + YN +I+G+ K + ++
Sbjct: 122 PDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRV 180
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
M S PD T N MI + + G ++ K N+ + + T IL ++
Sbjct: 181 LDRM-RSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATM 239
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
G D+ +MD M R P + TYN +I K G +++ E + ++ +G +P+ I
Sbjct: 240 LEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVI 299
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
+Y L+ A G + + ++ ++ + + ++ +I+ + G +E+ L M
Sbjct: 300 SYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLM 359
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
KE+ PD ++ +I A+ G + A MI+
Sbjct: 360 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS 396
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 1/211 (0%)
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
G +PD+ +I + NI K + G + D+ N L + + D
Sbjct: 119 GYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDA 177
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
V+D M+ + F P VTYNI+I + G ++ + ++ +P ITY L+ A
Sbjct: 178 TRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEA 237
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
G + + ++ ++ + + D +N II + G V++ E+ ++ + C PD
Sbjct: 238 TMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPD 297
Query: 311 NITFATMIQAYNALGMTEAAQNLENKMIAMK 341
I++ +++A G E + L KM + K
Sbjct: 298 VISYNILLRALLNQGKWEEGEKLMTKMFSEK 328
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 1 MVMLGKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV 58
+V+LG CK + E A + E M+ +G +P+ YT L+ G +G EA ND+ +
Sbjct: 513 IVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI 572
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 121 bits (303), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 154/340 (45%), Gaps = 3/340 (0%)
Query: 5 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
G CK ++A + E+M + P + Y L++ +G + E ++ MKS+ +
Sbjct: 284 GYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLK-LQ 342
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
PDV TY+ LI C + K++ +M G++ + VT+N + K +K E +
Sbjct: 343 PDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRK 402
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
+V+ G PDI T +++I AY G++ + E G+K + TLN + +
Sbjct: 403 VKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALC 462
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
+ D+ ++++ KR F VTY +I F + +EK E + +MK + P
Sbjct: 463 KERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVS 522
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
T+ SL+ G ++ S ++ D FN II Y + G VEK E +
Sbjct: 523 TFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNES 582
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342
+ PDN T ++ GMTE A N N +I +E
Sbjct: 583 IKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEERE 622
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 166/349 (47%), Gaps = 13/349 (3%)
Query: 2 VMLGKCKQPEQASL-----LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56
+++G + P S+ +F+ M+ G+ +V + LV+ Y G L++A + M
Sbjct: 172 LLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMV 231
Query: 57 SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116
S PD TY+ ++K+ +K R ++++L +M G+ + VTYN ++ GY K
Sbjct: 232 SEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSL 291
Query: 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176
+E M ++ PD+ T N +I+ N+G++ + + + + ++ D+ T N
Sbjct: 292 KEAFQIVELMKQT-NVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNT 350
Query: 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH-- 234
L G+ + R +M+ M+ VT+NI ++ K EK E +K+K
Sbjct: 351 LIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKE---EKREAVTRKVKELV 407
Query: 235 --RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292
G P+ +TY +L+ AY K G + ++R++ + ++T N I+ A + +
Sbjct: 408 DMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKL 467
Query: 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
++ L + +R + D +T+ T+I + E A + ++M +K
Sbjct: 468 DEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVK 516
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 139/315 (44%), Gaps = 5/315 (1%)
Query: 27 PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF-HRFDL-- 83
PS ++ +SAY G A M + KP++ T + L+ ++ F +
Sbjct: 129 PSKALFDIALSAYLHEGKPHVALQIFQKMIRLK-LKPNLLTCNTLLIGLVRYPSSFSISS 187
Query: 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143
++ +M +G+ + T+N +++GY K E+ MV +PD T N+++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247
Query: 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF 203
A G + +++ + G+ + T N L Y + G + +++ M++
Sbjct: 248 KAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVL 307
Query: 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSI 263
P + TYNI+I AG + + E MK ++P+ +TY +L+ + GL ++ +
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKL 367
Query: 264 LRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQAYN 322
+ Q+EN V + N + + E + + + H PD +T+ T+I+AY
Sbjct: 368 MEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYL 427
Query: 323 ALGMTEAAQNLENKM 337
+G A + +M
Sbjct: 428 KVGDLSGALEMMREM 442
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 9/246 (3%)
Query: 24 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83
G+K + ++ A + LDEA + +N +V TY LI F R +
Sbjct: 446 GIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEV-TYGTLIMG---FFREEK 501
Query: 84 IEKILA---EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLN 140
+EK L EM + I + T+N++I G K E F + ESG PD T N
Sbjct: 502 VEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESG-LLPDDSTFN 560
Query: 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200
S+I Y G +EK ++YNE K D T NIL + GM +K + + + +
Sbjct: 561 SIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEE 620
Query: 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260
TV TYN +I F K +++ + +M+ +G++P+ TY S +S + G + +
Sbjct: 621 REVDTV-TYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSET 679
Query: 261 DSILRQ 266
D +L++
Sbjct: 680 DELLKK 685
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 169/364 (46%), Gaps = 40/364 (10%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
+ +A L + M+ G +P + Y +V+ + G +D A + +N M++ + K +V +
Sbjct: 203 KASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEA-ARIKANVVIF 261
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
+ +I S K+ ++ + EM GI + VTYN++I+ ++ + S M+E
Sbjct: 262 NTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLE 321
Query: 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188
+P++ T N++I A+ G + + EK + E + D T N+L + D
Sbjct: 322 KK-INPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380
Query: 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248
+ + + FM + P + TYN +I F K +E E F++M RG+ N++TY +++
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440
Query: 249 SAYSKAG-------------------LIM-------------KVDS---ILRQVENSDVI 273
+ +AG IM K+D+ I + ++ S++
Sbjct: 441 QGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEME 500
Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
L+ +N +I +AG V + +LF ++ + PD +T+ TMI + + + A +L
Sbjct: 501 LNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIK---PDVVTYNTMISGLCSKRLLQEADDL 557
Query: 334 ENKM 337
KM
Sbjct: 558 FRKM 561
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 153/339 (45%), Gaps = 39/339 (11%)
Query: 5 GKC--KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
G C K+ A L + M+ G KP +T L+ EA + ++ M C+
Sbjct: 162 GYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ-RGCQ 220
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
PD+ TY ++ K DL +L +M I+ + V +NTIID K + E
Sbjct: 221 PDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDL 280
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
F+ M E+ G P++ T NS+I+ N G +W + L+ N+L K
Sbjct: 281 FTEM-ETKGIRPNVVTYNSLINCLCNYG------RWSDASRLLS--------NMLEKKIN 325
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
P VVT+N +I+ F K G + + E+ ++M R + P++I
Sbjct: 326 ---------------------PNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTI 364
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
TY L++ + + + + + + + D + + +N +I+ + + VE ELF M
Sbjct: 365 TYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREM 424
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341
+R V + +T+ T+IQ + G ++AQ + +M++ +
Sbjct: 425 SQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNR 463
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 142/311 (45%), Gaps = 2/311 (0%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
+ A LF M+ PS+ + L+SA + + S M+++ D+YTYSI
Sbjct: 65 DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLG-ISHDLYTYSI 123
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
I + + L +LA+M LG E VT +++++GY +K+ + + MVE G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190
PD FT ++I + ++ G + D+ T + + G D
Sbjct: 184 Y-KPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
++++ M+ VV +N +I++ K H+E + F +M+ +G++PN +TY SL++
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302
Query: 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310
G +L + + + FN +I A+ + G + + +L M +R PD
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPD 362
Query: 311 NITFATMIQAY 321
IT+ +I +
Sbjct: 363 TITYNLLINGF 373
Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 136/303 (44%), Gaps = 5/303 (1%)
Query: 13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILI 72
AS L ML + P+V + AL+ A+ + G L EA +M S PD TY++LI
Sbjct: 312 ASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRS-IDPDTITYNLLI 370
Query: 73 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC 132
+R D +++ M + TYNT+I+G+ K K+ E+ F M + G
Sbjct: 371 NGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLV 430
Query: 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192
+ T ++I + +G+ + + + + V DI T +IL G D
Sbjct: 431 GNTV-TYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALV 489
Query: 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252
+ ++QK + YN +IE KAG + + + F + +KP+ +TY +++S
Sbjct: 490 IFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMISGLC 546
Query: 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312
L+ + D + R+++ + ++ +N +I A + D EL M+ V D
Sbjct: 547 SKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDAS 606
Query: 313 TFA 315
T +
Sbjct: 607 TIS 609
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 5/239 (2%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A L E M+ + P Y L++ + LDEA M S DC P++ TY+ L
Sbjct: 346 EAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVS-KDCLPNIQTYNTL 404
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
I K R + ++ EMS G+ + VTY TII G+ +A + + F MV S
Sbjct: 405 INGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMV-SNR 463
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
DI T + ++ + G ++ + ++ +I N + + +AG K+
Sbjct: 464 VPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAG---KVG 520
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250
D P VVTYN +I +++ ++ F+KMK G PNS TY +L+ A
Sbjct: 521 EAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRA 579
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 1/245 (0%)
Query: 99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158
S V +N ++ K KFE + S +++ G D++T + I+ + +
Sbjct: 82 SIVEFNKLLSAVAKMNKFE-LVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140
Query: 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218
+ +G + DI TL+ L Y + +++D M + + P T+ +I
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200
Query: 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278
+ +M RG +P+ +TY ++V+ K G I ++L ++E + + +
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI 260
Query: 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338
FN II + + VE +LF M+ + P+ +T+ ++I G A L + M+
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320
Query: 339 AMKEN 343
K N
Sbjct: 321 EKKIN 325
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 153/322 (47%), Gaps = 2/322 (0%)
Query: 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC 75
LF M+ PS+ ++ ++S +S D S + M+ V D+Y+Y+I+I
Sbjct: 56 LFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHME-VCGIGHDLYSYNIVINCL 114
Query: 76 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135
+ RF + ++ +M G E VT +++I+G+ + + + S M E G PD
Sbjct: 115 CRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKM-EEMGFRPD 173
Query: 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195
+ N++I G + + ++ GV+AD T N L +G + +M
Sbjct: 174 VVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMR 233
Query: 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255
M R P V+T+ VI+ F K G + + +++M R + P+ TY SL++ G
Sbjct: 234 DMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHG 293
Query: 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315
+ + +L + + D +N +I+ + ++ V++ +LF M +R V D IT+
Sbjct: 294 RVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYN 353
Query: 316 TMIQAYNALGMTEAAQNLENKM 337
T+IQ Y G +AAQ + ++M
Sbjct: 354 TIIQGYFQAGRPDAAQEIFSRM 375
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/366 (22%), Positives = 161/366 (43%), Gaps = 34/366 (9%)
Query: 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP 63
L +C + A + M+ G +P V ++L++ + Q + +A ++ M+ + +P
Sbjct: 114 LCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG-FRP 172
Query: 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123
DV Y+ +I K + ++ M G+ AVTYN+++ G + ++ +
Sbjct: 173 DVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLM 232
Query: 124 SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183
MV P++ T ++I + G + K Y E V D+ T N L
Sbjct: 233 RDMVMRD-IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCM 291
Query: 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243
G D+ + ++D M + P VVTYN +I F K+ +++ + F++M RG+ ++IT
Sbjct: 292 HGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTIT 351
Query: 244 YCSLVSAYSKAG-------LIMKVDS-------------------------ILRQVENSD 271
Y +++ Y +AG + ++DS + ++ S+
Sbjct: 352 YNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSE 411
Query: 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331
+ LD +N +I + G+VE +LF ++ + PD +++ TMI + + +
Sbjct: 412 IELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSD 471
Query: 332 NLENKM 337
L KM
Sbjct: 472 LLYRKM 477
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 133/298 (44%), Gaps = 36/298 (12%)
Query: 5 GKCK--QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK 62
G CK A LF+ M DG++ Y +LV+ SG +A + DM + D
Sbjct: 183 GSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDM-VMRDIV 241
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
P+V T++ +I K +F K+ EM+ ++ TYN++I+G + +E +
Sbjct: 242 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 301
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
MV + GC PD+ T N++I+ + S +++ K + E G+ D T N + + Y
Sbjct: 302 LDLMV-TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYF 360
Query: 183 RAGMYDKMRSVMDFMQKRFFFPT--------------------------------VVTYN 210
+AG D + + M R T + TYN
Sbjct: 361 QAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYN 420
Query: 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268
IVI K G++E + F+ + +G+KP+ ++Y +++S + + K D + R+++
Sbjct: 421 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQ 478
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 5/228 (2%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A L+E M + P V Y +L++ G +DEA + D+ C PDV TY+ L
Sbjct: 262 EAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQML-DLMVTKGCLPDVVTYNTL 320
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
I K R D K+ EM+ G+ +TYNTII GY +A + + + FS M
Sbjct: 321 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM----D 376
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
P+I T + ++ + +EK + ++ DI T NI+ + G +
Sbjct: 377 SRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAW 436
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239
+ + + P VV+Y +I F + +K + ++KM+ G+ P
Sbjct: 437 DLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 116/277 (41%), Gaps = 36/277 (12%)
Query: 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS 122
P + +S ++ K +DL+ + M GI +YN +I+ + +F S
Sbjct: 67 PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 126
Query: 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182
M++ G PD+ T++S+I+ + + +++++K
Sbjct: 127 VGKMMKFGY-EPDVVTVSSLINGFCQGNRV------------------FDAIDLVSK--- 164
Query: 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242
M++ F P VV YN +I+ K G + E F +M+ G++ +++
Sbjct: 165 --------------MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAV 210
Query: 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302
TY SLV+ +G ++R + D++ + F +I + + G + +L+ M
Sbjct: 211 TYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEM 270
Query: 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339
R PD T+ ++I G + A+ + + M+
Sbjct: 271 TRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVT 307
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 153/322 (47%), Gaps = 2/322 (0%)
Query: 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71
+A +L + M+ +G +P V Y ++V+ +SG A + M+ + K DV+TYS +
Sbjct: 176 EAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEE-RNVKADVFTYSTI 234
Query: 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131
I S + D + EM GI+ S VTYN+++ G KA K+ + MV S
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV-SRE 293
Query: 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR 191
P++ T N ++ + G +++ + Y E G+ +I T N L Y +
Sbjct: 294 IVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEAN 353
Query: 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251
+++D M + P +VT+ +I+ + ++ + F+ + RG+ N++TY LV +
Sbjct: 354 NMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGF 413
Query: 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN 311
++G I + + +++ + V+ D + ++ G +EK E+F +++
Sbjct: 414 CQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGI 473
Query: 312 ITFATMIQAYNALGMTEAAQNL 333
+ + T+I+ G E A NL
Sbjct: 474 VMYTTIIEGMCKGGKVEDAWNL 495
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 142/328 (43%), Gaps = 37/328 (11%)
Query: 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI 70
+ A LF+ M + G+K SV Y +LV ++G ++ + DM S + P+V T+++
Sbjct: 245 DAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNV 303
Query: 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130
L+ K + ++ EM GI + +TYNT++DGY + E + MV +
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363
Query: 131 GCHPDIFTLNSMISAYG-----------------------------------NSGNIEKM 155
C PDI T S+I Y SG I+
Sbjct: 364 -CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422
Query: 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215
E+ + E GV D+ T IL G +K + + +QK +V Y +IE
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482
Query: 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275
K G +E F + +G+KPN +TY ++S K G + + + +LR++E +
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542
Query: 276 TPFFNCIISAYGQAGDVEKMGELFLTMK 303
+N +I A+ + GD+ +L MK
Sbjct: 543 DCTYNTLIRAHLRDGDLTASAKLIEEMK 570
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/366 (22%), Positives = 164/366 (44%), Gaps = 37/366 (10%)
Query: 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY 68
+ + A LF+ M+ PS+ ++ SA ++ + ++ ++ ++YT
Sbjct: 68 KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLE-LNGIAHNIYTL 126
Query: 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128
+I+I + + +L ++ LG E T+NT+I G K E MVE
Sbjct: 127 NIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE 186
Query: 129 SGGCHPDIFTLNSMISAYGNSGN-------IEKMEK------------------------ 157
+G C PD+ T NS+++ SG+ + KME+
Sbjct: 187 NG-CQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245
Query: 158 ----WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213
+ E G+K+ + T N L + +AG ++ ++ M R P V+T+N+++
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305
Query: 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273
+ F K G +++ E +K+M RG+ PN ITY +L+ Y + + +++L + +
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365
Query: 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333
D F +I Y V+ ++F + +R V + +T++ ++Q + G + A+ L
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425
Query: 334 ENKMIA 339
+M++
Sbjct: 426 FQEMVS 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,719,828
Number of Sequences: 539616
Number of extensions: 4741223
Number of successful extensions: 21442
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 12313
Number of HSP's gapped (non-prelim): 2939
length of query: 351
length of database: 191,569,459
effective HSP length: 118
effective length of query: 233
effective length of database: 127,894,771
effective search space: 29799481643
effective search space used: 29799481643
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)