Query 018743
Match_columns 351
No_of_seqs 729 out of 1391
Neff 12.2
Searched_HMMs 46136
Date Fri Mar 29 03:40:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 7.7E-61 1.7E-65 429.9 43.4 350 1-351 444-794 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.1E-58 2.3E-63 416.1 43.1 345 3-349 379-757 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 9.2E-53 2E-57 374.6 35.4 333 5-351 134-467 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.6E-52 3.5E-57 373.0 32.8 329 2-343 166-526 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 5.1E-52 1.1E-56 378.1 33.9 338 2-350 230-629 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.1E-50 2.3E-55 369.5 34.0 337 2-349 160-592 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.9E-26 1.7E-30 210.4 41.8 327 4-343 543-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-25 3.5E-30 208.4 41.3 322 4-338 577-898 (899)
9 PRK11788 tetratricopeptide rep 100.0 4E-25 8.6E-30 185.8 34.7 303 35-346 41-353 (389)
10 PRK11788 tetratricopeptide rep 100.0 1.8E-24 3.9E-29 181.9 37.3 302 4-312 45-354 (389)
11 PRK15174 Vi polysaccharide exp 100.0 1E-23 2.3E-28 185.7 40.1 331 4-346 52-387 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 3.4E-21 7.4E-26 170.3 41.9 330 4-343 137-574 (615)
13 PRK11447 cellulose synthase su 99.9 1E-20 2.2E-25 177.7 42.0 333 4-344 279-704 (1157)
14 PRK15174 Vi polysaccharide exp 99.9 9.2E-21 2E-25 167.2 39.0 332 4-345 15-352 (656)
15 KOG4626 O-linked N-acetylgluco 99.9 5E-22 1.1E-26 162.3 26.8 331 4-347 126-492 (966)
16 PRK11447 cellulose synthase su 99.9 1.5E-19 3.2E-24 170.0 40.7 323 4-339 361-739 (1157)
17 TIGR00990 3a0801s09 mitochondr 99.9 3.5E-19 7.5E-24 157.6 40.0 308 31-346 129-502 (615)
18 PRK10049 pgaA outer membrane p 99.9 7.3E-19 1.6E-23 158.4 41.2 335 4-345 59-461 (765)
19 KOG4626 O-linked N-acetylgluco 99.9 1.1E-20 2.3E-25 154.6 25.0 303 28-343 115-454 (966)
20 PRK10049 pgaA outer membrane p 99.9 1.9E-18 4.2E-23 155.7 39.9 335 3-346 24-428 (765)
21 PRK14574 hmsH outer membrane p 99.9 5.8E-17 1.3E-21 144.0 40.3 333 4-344 44-449 (822)
22 PRK09782 bacteriophage N4 rece 99.8 3.1E-16 6.7E-21 142.3 42.4 329 6-346 354-712 (987)
23 PRK14574 hmsH outer membrane p 99.8 1.8E-16 3.8E-21 141.0 39.3 335 4-345 112-518 (822)
24 PRK10747 putative protoheme IX 99.8 1.7E-16 3.7E-21 132.5 35.2 286 41-341 96-391 (398)
25 TIGR00540 hemY_coli hemY prote 99.8 1.2E-16 2.7E-21 134.1 34.1 293 40-340 95-399 (409)
26 PRK09782 bacteriophage N4 rece 99.8 5.3E-16 1.2E-20 140.8 39.7 328 4-344 386-744 (987)
27 PF13429 TPR_15: Tetratricopep 99.8 3.5E-19 7.5E-24 142.3 13.2 263 34-304 13-276 (280)
28 PF13429 TPR_15: Tetratricopep 99.8 6E-19 1.3E-23 141.0 13.3 262 70-339 13-276 (280)
29 KOG4422 Uncharacterized conser 99.8 2.7E-15 5.8E-20 118.2 31.7 333 6-343 219-593 (625)
30 KOG2076 RNA polymerase III tra 99.8 2.6E-15 5.6E-20 128.4 34.1 326 5-338 150-510 (895)
31 PRK10747 putative protoheme IX 99.8 5.3E-15 1.1E-19 123.6 34.3 285 6-304 96-389 (398)
32 TIGR00540 hemY_coli hemY prote 99.8 9.9E-15 2.2E-19 122.6 34.0 292 5-304 95-398 (409)
33 COG3071 HemY Uncharacterized e 99.8 3.1E-14 6.8E-19 111.3 33.7 295 41-347 96-397 (400)
34 KOG4422 Uncharacterized conser 99.8 1.1E-14 2.5E-19 114.7 31.3 306 28-341 206-552 (625)
35 COG2956 Predicted N-acetylgluc 99.8 1.1E-14 2.4E-19 110.6 29.6 300 42-351 48-357 (389)
36 COG2956 Predicted N-acetylgluc 99.8 2.4E-14 5.3E-19 108.8 31.4 295 6-307 47-349 (389)
37 KOG1126 DNA-binding cell divis 99.8 5.9E-16 1.3E-20 128.2 24.6 288 43-346 333-626 (638)
38 KOG2002 TPR-containing nuclear 99.8 8.1E-15 1.8E-19 126.4 29.5 128 220-349 626-754 (1018)
39 KOG1126 DNA-binding cell divis 99.7 4.7E-15 1E-19 122.9 25.5 286 9-308 334-623 (638)
40 KOG1155 Anaphase-promoting com 99.7 2.2E-13 4.7E-18 108.6 31.0 259 74-340 236-495 (559)
41 KOG2003 TPR repeat-containing 99.7 1.2E-13 2.6E-18 110.1 29.5 333 3-344 246-693 (840)
42 KOG2076 RNA polymerase III tra 99.7 2.8E-13 6.1E-18 116.2 33.0 313 30-348 140-486 (895)
43 COG3071 HemY Uncharacterized e 99.7 1.1E-12 2.4E-17 102.8 33.0 293 6-310 96-395 (400)
44 KOG1155 Anaphase-promoting com 99.7 3.4E-13 7.4E-18 107.5 29.1 290 39-339 237-535 (559)
45 KOG0547 Translocase of outer m 99.7 1.4E-12 3.1E-17 104.7 30.4 326 3-340 124-566 (606)
46 PRK12370 invasion protein regu 99.7 6.4E-13 1.4E-17 116.0 31.1 269 63-342 254-537 (553)
47 KOG0495 HAT repeat protein [RN 99.7 8.7E-12 1.9E-16 103.8 34.2 332 4-346 526-886 (913)
48 KOG0495 HAT repeat protein [RN 99.7 5.5E-12 1.2E-16 105.0 33.0 332 5-346 490-852 (913)
49 PRK12370 invasion protein regu 99.7 5.5E-13 1.2E-17 116.4 28.8 247 46-305 278-535 (553)
50 TIGR02521 type_IV_pilW type IV 99.7 8.3E-13 1.8E-17 103.1 27.0 199 138-340 33-232 (234)
51 TIGR02521 type_IV_pilW type IV 99.6 6.6E-13 1.4E-17 103.6 26.3 200 65-269 31-231 (234)
52 KOG1174 Anaphase-promoting com 99.6 4.1E-12 9E-17 100.1 28.5 299 39-346 206-506 (564)
53 KOG1173 Anaphase-promoting com 99.6 9.2E-12 2E-16 101.9 31.5 274 64-344 243-522 (611)
54 KOG1129 TPR repeat-containing 99.6 1.8E-13 4E-18 104.4 20.2 241 103-350 226-468 (478)
55 KOG2002 TPR-containing nuclear 99.6 1.1E-11 2.3E-16 107.7 33.2 258 82-343 253-528 (1018)
56 KOG1915 Cell cycle control pro 99.6 4.3E-11 9.4E-16 96.1 33.5 327 7-343 154-539 (677)
57 PF12569 NARP1: NMDA receptor- 99.6 1.7E-11 3.6E-16 103.9 32.8 295 35-340 10-334 (517)
58 KOG1173 Anaphase-promoting com 99.6 6.6E-12 1.4E-16 102.7 27.8 288 26-323 241-534 (611)
59 KOG0547 Translocase of outer m 99.6 1.5E-11 3.3E-16 99.0 28.9 307 30-344 116-495 (606)
60 KOG1915 Cell cycle control pro 99.6 7.6E-11 1.6E-15 94.8 31.9 323 7-341 86-501 (677)
61 KOG1129 TPR repeat-containing 99.6 5.2E-13 1.1E-17 101.9 18.3 230 69-305 227-458 (478)
62 KOG2003 TPR repeat-containing 99.6 1E-11 2.2E-16 99.3 26.1 280 38-326 428-709 (840)
63 PF12569 NARP1: NMDA receptor- 99.6 5E-11 1.1E-15 101.1 30.7 290 3-304 13-333 (517)
64 KOG1840 Kinesin light chain [C 99.6 1.4E-11 3.1E-16 103.1 26.3 246 95-340 194-479 (508)
65 KOG4318 Bicoid mRNA stability 99.5 1.8E-12 3.9E-17 111.2 20.4 256 15-291 11-286 (1088)
66 COG3063 PilF Tfp pilus assembl 99.5 1.6E-10 3.5E-15 84.3 23.6 198 102-304 37-235 (250)
67 COG3063 PilF Tfp pilus assembl 99.5 2.4E-10 5.3E-15 83.4 24.2 199 31-234 37-235 (250)
68 PRK11189 lipoprotein NlpI; Pro 99.5 4.9E-10 1.1E-14 90.0 27.4 204 101-315 65-274 (296)
69 PRK11189 lipoprotein NlpI; Pro 99.5 1E-09 2.3E-14 88.1 29.2 220 43-272 40-267 (296)
70 cd05804 StaR_like StaR_like; a 99.4 9.5E-09 2.1E-13 85.6 35.4 311 28-342 5-338 (355)
71 PF13041 PPR_2: PPR repeat fam 99.4 4.6E-13 1E-17 75.9 6.3 50 274-323 1-50 (50)
72 PF13041 PPR_2: PPR repeat fam 99.4 6.7E-13 1.4E-17 75.2 6.6 49 63-111 1-49 (50)
73 KOG4162 Predicted calmodulin-b 99.4 1.1E-08 2.4E-13 87.3 33.9 337 4-346 333-789 (799)
74 KOG1840 Kinesin light chain [C 99.4 9.1E-10 2E-14 92.5 26.1 239 65-303 199-477 (508)
75 KOG4318 Bicoid mRNA stability 99.4 8.2E-11 1.8E-15 101.4 19.0 256 51-329 12-289 (1088)
76 KOG1156 N-terminal acetyltrans 99.4 7.3E-09 1.6E-13 86.7 29.5 323 4-342 51-436 (700)
77 PF04733 Coatomer_E: Coatomer 99.4 7.4E-11 1.6E-15 93.3 17.3 253 36-305 8-265 (290)
78 KOG2376 Signal recognition par 99.4 2.7E-08 5.8E-13 82.6 31.7 118 2-127 20-137 (652)
79 KOG1174 Anaphase-promoting com 99.4 1.1E-08 2.4E-13 81.2 27.7 269 25-305 228-500 (564)
80 KOG0548 Molecular co-chaperone 99.4 1.7E-08 3.7E-13 82.8 29.6 332 3-344 11-459 (539)
81 cd05804 StaR_like StaR_like; a 99.3 1.8E-08 3.9E-13 84.0 31.0 295 6-305 18-336 (355)
82 KOG2047 mRNA splicing factor [ 99.3 3.8E-08 8.2E-13 82.6 31.0 168 174-342 390-581 (835)
83 PF04733 Coatomer_E: Coatomer 99.3 5.2E-10 1.1E-14 88.6 19.7 151 181-342 112-267 (290)
84 KOG0624 dsRNA-activated protei 99.3 7.3E-08 1.6E-12 74.9 29.0 307 28-345 37-375 (504)
85 KOG2047 mRNA splicing factor [ 99.3 1.4E-07 3.1E-12 79.3 32.0 222 114-339 361-614 (835)
86 PRK04841 transcriptional regul 99.3 1.1E-07 2.5E-12 89.2 35.3 339 6-344 386-764 (903)
87 KOG3785 Uncharacterized conser 99.3 1.2E-07 2.6E-12 74.2 28.5 124 218-345 371-495 (557)
88 KOG1125 TPR repeat-containing 99.2 6.8E-09 1.5E-13 85.8 21.8 95 169-266 428-523 (579)
89 KOG1125 TPR repeat-containing 99.2 3.2E-09 6.9E-14 87.7 19.4 225 108-343 293-530 (579)
90 KOG1128 Uncharacterized conser 99.2 1.3E-08 2.8E-13 86.4 23.2 226 96-343 394-619 (777)
91 KOG1070 rRNA processing protei 99.2 5.3E-08 1.2E-12 88.5 27.4 241 16-263 1446-1693(1710)
92 PLN02789 farnesyltranstransfer 99.2 1.6E-07 3.4E-12 75.7 27.2 213 68-287 40-266 (320)
93 KOG1070 rRNA processing protei 99.2 8.3E-08 1.8E-12 87.3 27.6 244 88-338 1447-1698(1710)
94 KOG4340 Uncharacterized conser 99.2 5.1E-08 1.1E-12 74.3 22.2 283 5-301 21-335 (459)
95 KOG3785 Uncharacterized conser 99.2 1.7E-07 3.6E-12 73.4 24.9 319 5-337 33-454 (557)
96 PLN02789 farnesyltranstransfer 99.2 2.3E-07 5E-12 74.7 26.8 216 30-253 38-267 (320)
97 KOG1914 mRNA cleavage and poly 99.1 1.9E-06 4E-11 71.3 32.0 134 207-342 367-503 (656)
98 KOG1156 N-terminal acetyltrans 99.1 2.3E-06 5E-11 72.3 32.6 320 6-342 87-470 (700)
99 KOG4162 Predicted calmodulin-b 99.1 2.5E-07 5.5E-12 79.3 26.3 287 10-305 460-783 (799)
100 KOG2376 Signal recognition par 99.1 1E-06 2.3E-11 73.5 29.0 157 3-166 55-254 (652)
101 KOG0624 dsRNA-activated protei 99.1 1.1E-06 2.3E-11 68.7 26.6 292 4-305 48-370 (504)
102 PRK10370 formate-dependent nit 99.1 7.9E-08 1.7E-12 72.1 19.8 154 143-312 23-179 (198)
103 KOG4340 Uncharacterized conser 99.1 2E-07 4.4E-12 71.2 21.3 290 32-335 13-334 (459)
104 KOG3081 Vesicle coat complex C 99.1 4.4E-07 9.5E-12 68.2 22.4 251 36-304 15-270 (299)
105 KOG0548 Molecular co-chaperone 99.1 4.7E-07 1E-11 74.6 24.6 300 36-345 9-426 (539)
106 TIGR03302 OM_YfiO outer membra 99.1 1.2E-07 2.5E-12 74.1 20.8 190 133-342 30-234 (235)
107 PRK10370 formate-dependent nit 99.0 2.8E-07 6E-12 69.2 20.7 120 149-271 52-174 (198)
108 PRK04841 transcriptional regul 99.0 3.5E-06 7.6E-11 79.4 32.8 304 37-342 382-722 (903)
109 KOG3081 Vesicle coat complex C 99.0 1.7E-06 3.7E-11 65.1 23.7 254 73-344 16-275 (299)
110 TIGR03302 OM_YfiO outer membra 99.0 2.2E-07 4.8E-12 72.5 20.6 187 28-235 32-232 (235)
111 KOG1128 Uncharacterized conser 99.0 8E-08 1.7E-12 81.8 18.4 215 31-268 400-614 (777)
112 COG5010 TadD Flp pilus assembl 99.0 3.5E-07 7.6E-12 68.6 19.4 160 69-233 70-229 (257)
113 PRK15179 Vi polysaccharide bio 99.0 6.9E-07 1.5E-11 79.3 24.6 147 167-317 82-228 (694)
114 COG5010 TadD Flp pilus assembl 99.0 5.2E-07 1.1E-11 67.7 20.1 163 99-267 66-228 (257)
115 KOG3617 WD40 and TPR repeat-co 99.0 1.7E-06 3.7E-11 75.2 24.9 232 2-268 736-994 (1416)
116 PRK15359 type III secretion sy 99.0 1.7E-07 3.8E-12 66.5 16.2 95 209-305 27-121 (144)
117 PRK15359 type III secretion sy 98.9 6E-08 1.3E-12 68.8 13.2 114 227-346 14-127 (144)
118 PRK15179 Vi polysaccharide bio 98.9 2.8E-06 6.1E-11 75.5 25.9 131 65-199 86-216 (694)
119 PF12854 PPR_1: PPR repeat 98.9 2.5E-09 5.3E-14 54.4 4.2 32 306-337 2-33 (34)
120 PRK14720 transcript cleavage f 98.9 2.5E-06 5.3E-11 76.9 25.1 219 28-287 30-268 (906)
121 KOG0985 Vesicle coat protein c 98.9 2.1E-05 4.5E-10 70.3 29.1 204 28-262 983-1187(1666)
122 TIGR02552 LcrH_SycD type III s 98.9 1.9E-07 4.2E-12 65.9 13.8 92 211-304 22-113 (135)
123 PF12854 PPR_1: PPR repeat 98.8 6.7E-09 1.5E-13 52.8 4.1 32 24-55 2-33 (34)
124 KOG1127 TPR repeat-containing 98.8 3.4E-06 7.5E-11 74.8 22.3 183 8-198 472-657 (1238)
125 KOG3060 Uncharacterized conser 98.8 5E-06 1.1E-10 62.2 19.8 190 112-305 24-220 (289)
126 KOG0985 Vesicle coat protein c 98.8 1E-05 2.3E-10 72.1 24.5 282 7-336 1061-1366(1666)
127 KOG3060 Uncharacterized conser 98.8 2.3E-05 4.9E-10 58.8 23.1 189 79-272 26-222 (289)
128 PRK14720 transcript cleavage f 98.8 3.1E-06 6.7E-11 76.3 21.9 235 62-322 28-268 (906)
129 KOG3616 Selective LIM binding 98.8 2.7E-06 5.9E-11 73.2 20.5 165 110-300 742-906 (1636)
130 TIGR02552 LcrH_SycD type III s 98.8 9.1E-07 2E-11 62.4 14.3 110 16-129 5-114 (135)
131 KOG1127 TPR repeat-containing 98.7 5.1E-06 1.1E-10 73.8 21.0 152 8-164 506-658 (1238)
132 COG4783 Putative Zn-dependent 98.7 5.5E-05 1.2E-09 62.3 24.2 231 10-270 219-454 (484)
133 PF09976 TPR_21: Tetratricopep 98.7 3.5E-06 7.5E-11 60.1 15.5 126 208-337 14-144 (145)
134 KOG3617 WD40 and TPR repeat-co 98.7 3.6E-05 7.8E-10 67.4 23.5 89 248-336 1042-1170(1416)
135 KOG3616 Selective LIM binding 98.7 2.3E-05 5E-10 67.8 21.8 284 6-334 744-1057(1636)
136 COG4783 Putative Zn-dependent 98.6 5.4E-05 1.2E-09 62.3 22.5 119 180-302 315-434 (484)
137 KOG2053 Mitochondrial inherita 98.6 0.00033 7.2E-09 62.0 35.5 192 6-203 21-258 (932)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 5.9E-06 1.3E-10 68.1 15.7 120 143-268 176-295 (395)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 6.4E-06 1.4E-10 67.9 15.6 121 211-337 174-294 (395)
140 KOG1914 mRNA cleavage and poly 98.5 0.00034 7.3E-09 58.6 27.2 312 20-340 12-464 (656)
141 PF09976 TPR_21: Tetratricopep 98.5 1.2E-05 2.6E-10 57.4 14.8 127 31-161 14-143 (145)
142 TIGR02795 tol_pal_ybgF tol-pal 98.5 8.3E-06 1.8E-10 56.0 12.8 102 243-344 4-109 (119)
143 KOG2053 Mitochondrial inherita 98.5 0.00095 2.1E-08 59.3 30.2 226 39-273 19-258 (932)
144 cd00189 TPR Tetratricopeptide 98.4 6.9E-06 1.5E-10 53.7 11.3 97 244-342 3-99 (100)
145 PRK15363 pathogenicity island 98.4 2.4E-05 5.1E-10 54.9 13.2 91 212-304 41-131 (157)
146 TIGR00756 PPR pentatricopeptid 98.4 8.4E-07 1.8E-11 45.8 4.3 33 278-310 2-34 (35)
147 PF10037 MRP-S27: Mitochondria 98.4 1.1E-05 2.4E-10 66.8 12.8 113 168-280 63-177 (429)
148 KOG0550 Molecular chaperone (D 98.4 0.00023 5E-09 57.5 19.0 258 4-270 59-350 (486)
149 PF10037 MRP-S27: Mitochondria 98.3 2.3E-05 4.9E-10 65.1 13.4 122 97-218 63-185 (429)
150 PF12895 Apc3: Anaphase-promot 98.3 2.4E-06 5.2E-11 54.5 6.1 81 254-336 2-83 (84)
151 PF13812 PPR_3: Pentatricopept 98.3 1.5E-06 3.3E-11 44.4 4.2 32 278-309 3-34 (34)
152 TIGR00756 PPR pentatricopeptid 98.3 1.9E-06 4.2E-11 44.4 4.5 33 208-240 2-34 (35)
153 PLN03088 SGT1, suppressor of 98.3 2.6E-05 5.7E-10 64.5 13.3 102 212-317 8-109 (356)
154 PRK15363 pathogenicity island 98.3 0.00015 3.3E-09 51.0 14.9 91 248-340 42-132 (157)
155 PF13812 PPR_3: Pentatricopept 98.3 2.5E-06 5.4E-11 43.6 4.4 32 208-239 3-34 (34)
156 TIGR02795 tol_pal_ybgF tol-pal 98.3 0.0001 2.2E-09 50.6 13.9 97 209-305 5-105 (119)
157 PF12895 Apc3: Anaphase-promot 98.3 2.7E-06 5.9E-11 54.2 5.5 47 8-54 3-50 (84)
158 PRK10153 DNA-binding transcrip 98.3 0.00014 2.9E-09 63.0 17.2 143 201-346 332-488 (517)
159 PF05843 Suf: Suppressor of fo 98.3 6.2E-05 1.3E-09 60.1 14.2 128 68-199 4-135 (280)
160 cd00189 TPR Tetratricopeptide 98.2 4.2E-05 9.2E-10 49.9 11.5 94 209-304 3-96 (100)
161 PLN03088 SGT1, suppressor of 98.2 9.2E-05 2E-09 61.3 15.2 101 176-279 7-107 (356)
162 PF05843 Suf: Suppressor of fo 98.2 6.7E-05 1.5E-09 59.9 13.9 143 172-319 2-148 (280)
163 PF13432 TPR_16: Tetratricopep 98.2 8.9E-06 1.9E-10 48.9 6.9 62 282-344 3-64 (65)
164 COG4235 Cytochrome c biogenesi 98.2 0.00022 4.7E-09 55.5 15.4 99 205-305 155-256 (287)
165 PRK02603 photosystem I assembl 98.2 0.00029 6.4E-09 51.9 15.7 84 173-257 37-122 (172)
166 PF13414 TPR_11: TPR repeat; P 98.2 1.7E-05 3.6E-10 48.4 7.5 67 275-342 2-69 (69)
167 PRK02603 photosystem I assembl 98.2 0.00023 4.9E-09 52.5 14.9 85 209-294 38-124 (172)
168 PF08579 RPM2: Mitochondrial r 98.1 7.1E-05 1.5E-09 48.8 9.8 72 252-323 36-116 (120)
169 CHL00033 ycf3 photosystem I as 98.1 0.00013 2.8E-09 53.5 12.9 64 66-129 36-101 (168)
170 PRK10866 outer membrane biogen 98.1 0.0023 5E-08 49.9 20.5 58 281-338 180-239 (243)
171 KOG0553 TPR repeat-containing 98.1 7.8E-05 1.7E-09 57.6 11.3 92 180-273 90-181 (304)
172 PF14559 TPR_19: Tetratricopep 98.1 1.2E-05 2.5E-10 48.9 5.7 63 5-71 2-64 (68)
173 PF08579 RPM2: Mitochondrial r 98.1 0.00011 2.3E-09 48.0 10.0 68 185-252 39-115 (120)
174 KOG0553 TPR repeat-containing 98.1 4E-05 8.6E-10 59.1 9.5 101 215-319 90-190 (304)
175 COG4700 Uncharacterized protei 98.1 0.0017 3.7E-08 46.7 18.3 133 97-232 86-219 (251)
176 COG4235 Cytochrome c biogenesi 98.1 0.00037 7.9E-09 54.2 14.5 115 11-129 139-256 (287)
177 CHL00033 ycf3 photosystem I as 98.1 0.0002 4.2E-09 52.6 12.8 93 208-301 37-138 (168)
178 PF14938 SNAP: Soluble NSF att 98.0 0.00056 1.2E-08 54.8 15.9 130 209-339 117-265 (282)
179 PRK10866 outer membrane biogen 98.0 0.0044 9.6E-08 48.3 21.4 176 71-267 38-238 (243)
180 KOG0550 Molecular chaperone (D 98.0 0.002 4.4E-08 52.3 17.2 258 74-343 58-353 (486)
181 PRK10153 DNA-binding transcrip 98.0 0.0017 3.7E-08 56.5 18.2 63 171-235 420-482 (517)
182 PF01535 PPR: PPR repeat; Int 98.0 1.4E-05 3E-10 39.7 3.5 29 278-306 2-30 (31)
183 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.0076 1.6E-07 49.8 29.1 132 209-343 400-534 (660)
184 PF01535 PPR: PPR repeat; Int 97.9 1.5E-05 3.3E-10 39.6 3.4 29 208-236 2-30 (31)
185 PRK10803 tol-pal system protei 97.9 0.00054 1.2E-08 53.8 13.5 91 253-343 155-249 (263)
186 PF14559 TPR_19: Tetratricopep 97.9 6.4E-05 1.4E-09 45.6 6.5 50 254-304 4-53 (68)
187 PF14938 SNAP: Soluble NSF att 97.9 0.0013 2.8E-08 52.8 15.6 123 221-344 89-229 (282)
188 PF13432 TPR_16: Tetratricopep 97.9 0.0001 2.2E-09 44.2 7.0 58 247-305 3-60 (65)
189 KOG2041 WD40 repeat protein [G 97.9 0.015 3.3E-07 50.8 22.0 280 8-324 748-1070(1189)
190 PF12688 TPR_5: Tetratrico pep 97.9 0.0027 5.9E-08 43.1 14.3 92 212-303 7-102 (120)
191 KOG1130 Predicted G-alpha GTPa 97.8 0.0017 3.6E-08 52.8 14.7 137 208-344 197-348 (639)
192 PRK15331 chaperone protein Sic 97.8 0.0019 4E-08 45.9 13.3 87 216-304 47-133 (165)
193 COG3898 Uncharacterized membra 97.8 0.012 2.6E-07 47.8 31.6 51 77-128 166-216 (531)
194 PF12688 TPR_5: Tetratrico pep 97.8 0.0022 4.9E-08 43.5 12.9 55 74-128 10-66 (120)
195 PF06239 ECSIT: Evolutionarily 97.8 0.0011 2.3E-08 49.2 12.1 48 28-76 46-98 (228)
196 PF13371 TPR_9: Tetratricopept 97.8 0.00017 3.8E-09 44.4 6.8 59 285-344 4-62 (73)
197 KOG2041 WD40 repeat protein [G 97.8 0.023 5.1E-07 49.7 21.6 183 26-231 689-903 (1189)
198 PF06239 ECSIT: Evolutionarily 97.7 0.0021 4.5E-08 47.7 12.9 50 204-253 45-99 (228)
199 PF13414 TPR_11: TPR repeat; P 97.7 0.00033 7.3E-09 42.5 7.6 60 243-303 5-65 (69)
200 KOG1130 Predicted G-alpha GTPa 97.7 0.0011 2.3E-08 53.9 11.9 266 37-304 25-343 (639)
201 COG4700 Uncharacterized protei 97.6 0.014 3E-07 42.3 18.6 132 133-268 86-220 (251)
202 PF03704 BTAD: Bacterial trans 97.6 0.0017 3.7E-08 46.4 10.4 71 243-314 64-139 (146)
203 PF04840 Vps16_C: Vps16, C-ter 97.6 0.031 6.7E-07 45.5 24.3 105 175-299 181-285 (319)
204 PF13371 TPR_9: Tetratricopept 97.5 0.00055 1.2E-08 42.1 6.7 55 74-129 4-58 (73)
205 KOG2796 Uncharacterized conser 97.5 0.024 5.1E-07 43.5 21.7 143 173-318 179-326 (366)
206 PRK10803 tol-pal system protei 97.5 0.0048 1E-07 48.6 12.5 97 207-305 144-246 (263)
207 COG3118 Thioredoxin domain-con 97.5 0.016 3.4E-07 45.4 14.8 155 36-195 141-296 (304)
208 PF13424 TPR_12: Tetratricopep 97.5 0.00063 1.4E-08 42.5 6.2 64 277-340 6-75 (78)
209 PRK15331 chaperone protein Sic 97.4 0.021 4.5E-07 40.7 15.0 85 253-339 49-133 (165)
210 PF13281 DUF4071: Domain of un 97.4 0.049 1.1E-06 44.9 20.1 166 138-305 143-334 (374)
211 PF03704 BTAD: Bacterial trans 97.4 0.017 3.7E-07 41.2 14.2 71 208-279 64-139 (146)
212 PF13525 YfiO: Outer membrane 97.4 0.032 6.9E-07 42.3 20.4 45 282-328 147-195 (203)
213 PF13525 YfiO: Outer membrane 97.4 0.033 7.1E-07 42.3 20.1 187 101-296 6-198 (203)
214 KOG1538 Uncharacterized conser 97.4 0.078 1.7E-06 46.2 19.6 90 205-305 746-846 (1081)
215 PF12921 ATP13: Mitochondrial 97.4 0.012 2.5E-07 40.5 11.7 56 269-324 45-101 (126)
216 PF12921 ATP13: Mitochondrial 97.3 0.0063 1.4E-07 41.7 10.3 53 95-147 47-99 (126)
217 PF04184 ST7: ST7 protein; In 97.2 0.087 1.9E-06 44.6 17.1 109 241-349 259-384 (539)
218 PF13281 DUF4071: Domain of un 97.2 0.1 2.2E-06 43.1 21.7 167 102-270 143-334 (374)
219 COG3898 Uncharacterized membra 97.2 0.1 2.2E-06 42.7 29.4 285 42-344 97-396 (531)
220 PF13424 TPR_12: Tetratricopep 97.1 0.0022 4.8E-08 40.0 5.9 26 31-56 7-32 (78)
221 PF10300 DUF3808: Protein of u 97.1 0.12 2.7E-06 44.8 18.0 166 174-342 191-378 (468)
222 KOG0543 FKBP-type peptidyl-pro 97.1 0.031 6.7E-07 45.7 13.3 125 178-304 215-354 (397)
223 PF07079 DUF1347: Protein of u 97.0 0.15 3.3E-06 42.6 32.3 50 286-337 472-521 (549)
224 KOG1538 Uncharacterized conser 97.0 0.07 1.5E-06 46.5 15.3 214 35-269 604-845 (1081)
225 KOG2796 Uncharacterized conser 97.0 0.1 2.2E-06 40.3 24.1 131 140-271 181-316 (366)
226 PF10300 DUF3808: Protein of u 97.0 0.15 3.2E-06 44.3 17.7 153 112-267 200-373 (468)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.034 7.4E-07 46.6 12.5 64 205-270 74-141 (453)
228 KOG4555 TPR repeat-containing 96.9 0.027 5.8E-07 38.2 9.7 93 36-130 50-145 (175)
229 KOG2280 Vacuolar assembly/sort 96.9 0.3 6.4E-06 43.5 20.6 83 210-302 688-770 (829)
230 COG1729 Uncharacterized protei 96.8 0.023 5.1E-07 43.9 10.2 100 29-129 142-244 (262)
231 PF04840 Vps16_C: Vps16, C-ter 96.8 0.23 4.9E-06 40.6 28.4 106 208-333 179-284 (319)
232 PF04053 Coatomer_WDAD: Coatom 96.8 0.21 4.6E-06 42.8 16.4 73 217-304 329-401 (443)
233 KOG2610 Uncharacterized conser 96.8 0.092 2E-06 42.0 13.0 154 147-303 114-274 (491)
234 PF13512 TPR_18: Tetratricopep 96.7 0.1 2.2E-06 36.4 12.0 84 29-112 10-94 (142)
235 PF09205 DUF1955: Domain of un 96.7 0.092 2E-06 35.8 13.9 28 241-268 120-147 (161)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.071 1.5E-06 44.8 13.0 64 64-129 74-141 (453)
237 PF13428 TPR_14: Tetratricopep 96.7 0.0041 8.9E-08 33.7 4.1 31 314-344 4-34 (44)
238 PF13176 TPR_7: Tetratricopept 96.7 0.0045 9.8E-08 31.7 4.0 32 313-344 1-32 (36)
239 PRK11906 transcriptional regul 96.7 0.14 2.9E-06 43.2 14.2 110 222-336 320-432 (458)
240 PRK11906 transcriptional regul 96.7 0.32 6.8E-06 41.1 16.3 81 81-164 320-400 (458)
241 PF04053 Coatomer_WDAD: Coatom 96.7 0.21 4.5E-06 42.8 15.8 75 146-235 328-402 (443)
242 KOG0543 FKBP-type peptidyl-pro 96.7 0.11 2.4E-06 42.7 13.3 127 213-342 215-357 (397)
243 COG1729 Uncharacterized protei 96.6 0.069 1.5E-06 41.5 11.5 90 254-343 154-247 (262)
244 KOG4555 TPR repeat-containing 96.6 0.094 2E-06 35.7 10.4 93 214-307 51-146 (175)
245 KOG2610 Uncharacterized conser 96.6 0.15 3.2E-06 40.9 12.8 152 112-266 115-272 (491)
246 COG0457 NrfG FOG: TPR repeat [ 96.5 0.26 5.7E-06 38.0 30.3 223 79-304 37-264 (291)
247 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.43 9.3E-06 40.1 25.9 92 15-112 30-121 (660)
248 KOG1941 Acetylcholine receptor 96.4 0.4 8.6E-06 39.0 14.5 229 5-233 17-273 (518)
249 PF13512 TPR_18: Tetratricopep 96.4 0.2 4.3E-06 35.0 12.4 76 213-288 17-94 (142)
250 PF13428 TPR_14: Tetratricopep 96.3 0.019 4E-07 31.0 5.0 24 281-304 6-29 (44)
251 COG3629 DnrI DNA-binding trans 96.3 0.082 1.8E-06 41.7 10.3 75 244-319 156-235 (280)
252 PF07719 TPR_2: Tetratricopept 96.2 0.02 4.3E-07 28.7 4.8 32 312-343 2-33 (34)
253 KOG1941 Acetylcholine receptor 96.2 0.45 9.8E-06 38.7 14.0 230 39-268 16-273 (518)
254 KOG1585 Protein required for f 96.2 0.38 8.2E-06 36.8 16.8 55 279-334 193-250 (308)
255 PF00515 TPR_1: Tetratricopept 96.2 0.02 4.4E-07 28.7 4.6 32 312-343 2-33 (34)
256 KOG3941 Intermediate in Toll s 96.2 0.068 1.5E-06 41.6 9.0 87 28-115 66-173 (406)
257 KOG2114 Vacuolar assembly/sort 96.1 0.92 2E-05 41.2 16.7 179 68-268 337-517 (933)
258 KOG1258 mRNA processing protei 96.1 0.81 1.8E-05 39.9 26.8 311 11-331 62-420 (577)
259 COG3118 Thioredoxin domain-con 96.1 0.53 1.1E-05 37.2 17.0 149 73-226 142-292 (304)
260 PF02259 FAT: FAT domain; Int 96.1 0.72 1.6E-05 38.5 19.0 66 204-269 144-212 (352)
261 PF07079 DUF1347: Protein of u 95.9 0.89 1.9E-05 38.3 25.7 32 312-343 299-330 (549)
262 PF09205 DUF1955: Domain of un 95.9 0.33 7.1E-06 33.2 15.4 140 76-238 13-152 (161)
263 COG4105 ComL DNA uptake lipopr 95.9 0.62 1.3E-05 36.1 21.1 61 281-342 172-235 (254)
264 smart00299 CLH Clathrin heavy 95.8 0.4 8.7E-06 33.8 15.0 6 257-262 112-117 (140)
265 PF09613 HrpB1_HrpK: Bacterial 95.7 0.5 1.1E-05 33.8 12.0 119 207-332 8-130 (160)
266 COG4649 Uncharacterized protei 95.7 0.52 1.1E-05 34.0 14.6 136 28-166 58-197 (221)
267 PF13929 mRNA_stabil: mRNA sta 95.6 0.85 1.9E-05 36.1 16.4 64 97-160 199-262 (292)
268 smart00299 CLH Clathrin heavy 95.6 0.5 1.1E-05 33.3 15.1 43 105-149 12-54 (140)
269 COG3629 DnrI DNA-binding trans 95.5 0.3 6.5E-06 38.6 10.3 78 137-215 154-236 (280)
270 PF08631 SPO22: Meiosis protei 95.4 1.1 2.4E-05 36.1 27.1 20 319-338 254-273 (278)
271 PF08631 SPO22: Meiosis protei 95.4 1.1 2.4E-05 36.0 25.7 62 102-165 86-150 (278)
272 KOG3941 Intermediate in Toll s 95.4 0.2 4.4E-06 39.1 8.8 105 168-291 64-173 (406)
273 cd00923 Cyt_c_Oxidase_Va Cytoc 95.3 0.24 5.2E-06 31.6 7.5 63 256-319 22-84 (103)
274 KOG2114 Vacuolar assembly/sort 95.3 0.44 9.5E-06 43.1 11.8 143 34-196 373-515 (933)
275 PF04184 ST7: ST7 protein; In 95.3 1.2 2.7E-05 38.0 13.8 61 104-164 263-323 (539)
276 PF02284 COX5A: Cytochrome c o 95.3 0.24 5.3E-06 32.0 7.6 60 259-319 28-87 (108)
277 PF13431 TPR_17: Tetratricopep 95.3 0.032 7E-07 28.1 3.1 32 17-49 2-33 (34)
278 KOG4234 TPR repeat-containing 95.2 0.48 1E-05 35.1 9.8 89 215-305 104-197 (271)
279 PF10602 RPN7: 26S proteasome 95.1 0.96 2.1E-05 33.4 11.6 97 30-127 37-140 (177)
280 COG4105 ComL DNA uptake lipopr 95.1 1.2 2.6E-05 34.5 23.6 80 66-147 36-117 (254)
281 COG0457 NrfG FOG: TPR repeat [ 95.1 1.2 2.5E-05 34.3 29.7 228 42-272 36-267 (291)
282 PF13181 TPR_8: Tetratricopept 95.0 0.099 2.1E-06 26.1 4.5 30 313-342 3-32 (34)
283 PF10602 RPN7: 26S proteasome 95.0 0.73 1.6E-05 34.0 10.7 59 244-302 39-99 (177)
284 PF13431 TPR_17: Tetratricopep 95.0 0.034 7.4E-07 28.0 2.7 20 311-330 13-32 (34)
285 KOG1550 Extracellular protein 95.0 2.6 5.6E-05 37.8 24.8 276 45-343 228-541 (552)
286 KOG1920 IkappaB kinase complex 94.9 3.6 7.9E-05 39.3 22.9 110 173-302 941-1052(1265)
287 COG4649 Uncharacterized protei 94.8 1.1 2.4E-05 32.5 13.8 14 253-266 179-192 (221)
288 PF13176 TPR_7: Tetratricopept 94.8 0.095 2.1E-06 26.7 4.0 26 278-303 1-26 (36)
289 KOG1920 IkappaB kinase complex 94.7 4.1 8.8E-05 39.0 22.3 86 209-304 942-1027(1265)
290 KOG4570 Uncharacterized conser 94.7 1.1 2.3E-05 35.9 11.1 106 94-201 58-165 (418)
291 COG2976 Uncharacterized protei 94.7 1.3 2.8E-05 32.8 13.1 96 246-343 94-191 (207)
292 KOG4570 Uncharacterized conser 94.4 1.6 3.4E-05 35.0 11.3 98 170-269 63-163 (418)
293 PRK15180 Vi polysaccharide bio 94.3 1.2 2.5E-05 38.0 11.1 127 217-347 300-427 (831)
294 PF13170 DUF4003: Protein of u 94.3 2.4 5.2E-05 34.3 20.9 130 153-284 79-225 (297)
295 PF13174 TPR_6: Tetratricopept 94.2 0.13 2.8E-06 25.3 3.9 28 316-343 5-32 (33)
296 KOG1258 mRNA processing protei 94.2 3.6 7.9E-05 36.1 26.9 309 28-342 44-397 (577)
297 PF07035 Mic1: Colon cancer-as 94.0 1.7 3.7E-05 31.6 15.3 36 15-50 15-50 (167)
298 cd00923 Cyt_c_Oxidase_Va Cytoc 93.9 0.46 9.9E-06 30.4 6.3 60 47-108 25-84 (103)
299 COG4785 NlpI Lipoprotein NlpI, 93.9 2.1 4.5E-05 32.4 17.0 188 39-236 75-267 (297)
300 PF09613 HrpB1_HrpK: Bacterial 93.7 1.8 3.9E-05 31.0 13.3 51 77-128 22-72 (160)
301 KOG1585 Protein required for f 93.6 2.7 5.8E-05 32.5 18.1 55 244-299 193-250 (308)
302 PF13374 TPR_10: Tetratricopep 93.6 0.26 5.6E-06 25.8 4.5 30 312-341 3-32 (42)
303 TIGR02561 HrpB1_HrpK type III 93.5 1.9 4.1E-05 30.4 11.1 54 217-272 21-75 (153)
304 PRK15180 Vi polysaccharide bio 93.4 3.3 7.2E-05 35.4 12.2 90 37-129 331-420 (831)
305 PF00515 TPR_1: Tetratricopept 93.3 0.3 6.5E-06 24.3 4.2 27 278-304 3-29 (34)
306 TIGR02508 type_III_yscG type I 93.2 1.5 3.2E-05 28.4 8.3 86 9-103 20-105 (115)
307 PF13170 DUF4003: Protein of u 93.1 4 8.6E-05 33.1 21.6 131 81-213 78-224 (297)
308 KOG2280 Vacuolar assembly/sort 93.1 6.8 0.00015 35.6 26.8 317 5-337 400-770 (829)
309 PF06552 TOM20_plant: Plant sp 93.1 2.3 5E-05 31.1 9.5 13 308-320 110-122 (186)
310 KOG0890 Protein kinase of the 93.0 13 0.00028 38.8 25.8 65 276-343 1670-1734(2382)
311 KOG4648 Uncharacterized conser 93.0 0.47 1E-05 38.3 6.6 95 213-311 104-198 (536)
312 PF11207 DUF2989: Protein of u 92.8 3 6.5E-05 31.2 10.1 78 252-331 118-198 (203)
313 PF09477 Type_III_YscG: Bacter 92.5 2 4.4E-05 28.2 9.0 79 9-95 21-99 (116)
314 PF07719 TPR_2: Tetratricopept 92.4 0.54 1.2E-05 23.2 4.5 28 278-305 3-30 (34)
315 PF02284 COX5A: Cytochrome c o 92.3 1.6 3.5E-05 28.4 7.1 47 83-129 28-74 (108)
316 PF13374 TPR_10: Tetratricopep 92.2 0.42 9.2E-06 25.0 4.1 27 101-127 3-29 (42)
317 PF02259 FAT: FAT domain; Int 91.7 6.9 0.00015 32.7 24.2 67 169-235 144-213 (352)
318 PRK11619 lytic murein transgly 91.7 11 0.00023 34.6 29.6 251 70-338 104-373 (644)
319 PF00637 Clathrin: Region in C 91.7 0.066 1.4E-06 38.0 0.6 122 211-339 12-137 (143)
320 KOG0276 Vesicle coat complex C 91.4 4 8.7E-05 36.0 10.5 103 37-162 645-747 (794)
321 KOG4234 TPR repeat-containing 91.2 5 0.00011 30.1 9.8 91 181-272 105-199 (271)
322 PF11207 DUF2989: Protein of u 91.2 3.5 7.6E-05 30.9 8.9 80 38-120 116-198 (203)
323 smart00028 TPR Tetratricopepti 91.2 0.52 1.1E-05 22.4 3.6 29 313-341 3-31 (34)
324 PF07035 Mic1: Colon cancer-as 91.2 4.5 9.8E-05 29.4 15.4 34 156-189 14-47 (167)
325 COG4785 NlpI Lipoprotein NlpI, 91.1 5.4 0.00012 30.3 21.4 28 278-305 239-266 (297)
326 PF07721 TPR_4: Tetratricopept 90.9 0.49 1.1E-05 21.9 3.0 21 315-335 5-25 (26)
327 TIGR03504 FimV_Cterm FimV C-te 90.8 0.41 8.8E-06 25.7 2.9 23 317-339 5-27 (44)
328 KOG4077 Cytochrome c oxidase, 90.7 3 6.4E-05 28.4 7.3 59 259-318 67-125 (149)
329 PF13174 TPR_6: Tetratricopept 90.5 0.62 1.4E-05 22.7 3.4 25 281-305 5-29 (33)
330 KOG0276 Vesicle coat complex C 90.3 13 0.00027 33.2 13.7 130 139-301 617-746 (794)
331 COG4455 ImpE Protein of avirul 90.3 1 2.2E-05 34.0 5.5 77 33-111 5-83 (273)
332 KOG1550 Extracellular protein 90.1 14 0.0003 33.3 26.9 279 9-305 227-538 (552)
333 PF07163 Pex26: Pex26 protein; 90.0 8.4 0.00018 30.6 13.4 87 143-229 90-181 (309)
334 PF10579 Rapsyn_N: Rapsyn N-te 89.7 3.1 6.6E-05 25.7 6.2 49 288-336 18-68 (80)
335 PF08424 NRDE-2: NRDE-2, neces 89.4 11 0.00024 31.1 18.7 97 168-266 16-127 (321)
336 COG4455 ImpE Protein of avirul 89.3 4.7 0.0001 30.7 8.2 132 208-346 3-140 (273)
337 KOG3364 Membrane protein invol 89.3 5.6 0.00012 27.6 8.7 68 238-305 29-100 (149)
338 KOG4648 Uncharacterized conser 88.9 3.6 7.7E-05 33.5 7.9 94 178-273 104-197 (536)
339 PF13181 TPR_8: Tetratricopept 88.9 1.7 3.6E-05 21.4 4.3 28 278-305 3-30 (34)
340 PRK09687 putative lyase; Provi 88.9 11 0.00024 30.4 29.2 234 62-321 34-277 (280)
341 PF14853 Fis1_TPR_C: Fis1 C-te 88.8 1.7 3.7E-05 24.5 4.5 29 283-313 8-36 (53)
342 PRK09687 putative lyase; Provi 88.5 12 0.00025 30.3 27.7 234 26-286 34-277 (280)
343 PF00637 Clathrin: Region in C 88.4 0.15 3.2E-06 36.2 0.2 79 4-90 17-95 (143)
344 TIGR03504 FimV_Cterm FimV C-te 88.1 2 4.3E-05 23.1 4.3 22 213-234 6-27 (44)
345 PF08424 NRDE-2: NRDE-2, neces 87.8 14 0.00031 30.5 16.1 90 17-110 8-109 (321)
346 TIGR02561 HrpB1_HrpK type III 87.7 8 0.00017 27.4 12.2 51 77-129 22-73 (153)
347 PF07163 Pex26: Pex26 protein; 87.3 13 0.00029 29.5 10.4 86 212-299 89-181 (309)
348 COG5159 RPN6 26S proteasome re 87.3 13 0.00029 29.6 11.5 24 316-339 130-153 (421)
349 PF06552 TOM20_plant: Plant sp 86.8 10 0.00023 27.9 9.1 30 10-40 7-36 (186)
350 PF04097 Nic96: Nup93/Nic96; 86.5 26 0.00057 32.1 20.4 91 245-337 418-531 (613)
351 TIGR02508 type_III_yscG type I 86.3 7.1 0.00015 25.4 8.6 86 80-174 20-105 (115)
352 PF10579 Rapsyn_N: Rapsyn N-te 85.5 2.9 6.3E-05 25.8 4.4 46 112-157 18-64 (80)
353 KOG4077 Cytochrome c oxidase, 85.4 7.6 0.00016 26.5 6.7 87 20-109 39-127 (149)
354 cd00280 TRFH Telomeric Repeat 85.3 9.2 0.0002 28.2 7.6 19 39-57 121-139 (200)
355 KOG4642 Chaperone-dependent E3 85.1 16 0.00035 28.4 10.9 116 181-300 20-141 (284)
356 COG2976 Uncharacterized protei 84.6 15 0.00032 27.6 15.1 92 213-306 96-189 (207)
357 COG2909 MalT ATP-dependent tra 84.5 36 0.00078 32.0 28.7 227 110-336 425-684 (894)
358 KOG1586 Protein required for f 84.5 17 0.00036 28.2 16.1 54 220-273 128-186 (288)
359 PRK10941 hypothetical protein; 84.4 13 0.00028 29.7 9.0 61 244-305 184-244 (269)
360 PF12862 Apc5: Anaphase-promot 84.3 8.8 0.00019 24.8 7.0 20 284-303 49-68 (94)
361 KOG4507 Uncharacterized conser 84.2 3.3 7.1E-05 36.4 5.8 92 253-345 619-710 (886)
362 PF14689 SPOB_a: Sensor_kinase 84.2 4.5 9.8E-05 23.7 4.9 25 315-339 27-51 (62)
363 COG1747 Uncharacterized N-term 83.8 29 0.00064 30.4 26.1 165 99-271 65-235 (711)
364 PF11846 DUF3366: Domain of un 83.0 11 0.00024 28.3 7.9 35 308-342 141-175 (193)
365 KOG0545 Aryl-hydrocarbon recep 82.5 21 0.00046 27.9 9.9 61 282-343 236-296 (329)
366 KOG2471 TPR repeat-containing 82.4 33 0.00071 29.9 13.4 277 6-288 29-381 (696)
367 cd00280 TRFH Telomeric Repeat 81.8 16 0.00034 27.1 7.6 48 222-269 85-139 (200)
368 PF11846 DUF3366: Domain of un 81.3 11 0.00025 28.2 7.4 61 69-129 112-173 (193)
369 cd08819 CARD_MDA5_2 Caspase ac 80.4 12 0.00026 23.7 7.6 64 14-84 22-85 (88)
370 PRK10941 hypothetical protein; 80.2 29 0.00062 27.8 10.7 77 104-182 185-262 (269)
371 COG1747 Uncharacterized N-term 79.4 43 0.00094 29.4 25.5 181 62-251 63-249 (711)
372 COG0735 Fur Fe2+/Zn2+ uptake r 79.2 19 0.0004 25.7 7.4 44 212-255 26-69 (145)
373 PRK11619 lytic murein transgly 79.0 54 0.0012 30.3 26.2 278 39-339 43-340 (644)
374 KOG1464 COP9 signalosome, subu 78.8 31 0.00067 27.4 18.1 202 60-262 21-252 (440)
375 PF09670 Cas_Cas02710: CRISPR- 78.6 41 0.00089 28.7 11.6 55 180-235 140-198 (379)
376 PRK10564 maltose regulon perip 77.9 8.3 0.00018 31.0 5.7 45 61-105 252-297 (303)
377 PF14689 SPOB_a: Sensor_kinase 77.9 12 0.00025 22.0 5.4 19 283-301 30-48 (62)
378 PF12862 Apc5: Anaphase-promot 77.7 15 0.00032 23.8 6.1 24 106-129 47-70 (94)
379 PF10366 Vps39_1: Vacuolar sor 77.2 18 0.00038 24.2 6.4 27 278-304 41-67 (108)
380 PF10345 Cohesin_load: Cohesin 76.9 61 0.0013 29.8 32.3 185 11-197 38-251 (608)
381 COG3947 Response regulator con 76.8 38 0.00082 27.3 16.8 58 244-302 282-339 (361)
382 COG3947 Response regulator con 76.4 39 0.00084 27.3 15.7 60 278-338 281-340 (361)
383 PF07575 Nucleopor_Nup85: Nup8 75.6 31 0.00068 31.3 9.6 23 29-52 149-171 (566)
384 PF13929 mRNA_stabil: mRNA sta 75.6 41 0.00088 27.1 21.2 63 238-300 199-262 (292)
385 PF13762 MNE1: Mitochondrial s 75.3 27 0.00058 24.8 9.6 50 99-149 78-128 (145)
386 PF11123 DNA_Packaging_2: DNA 75.2 16 0.00034 22.1 5.2 33 9-42 12-44 (82)
387 COG2909 MalT ATP-dependent tra 75.2 76 0.0017 30.1 26.0 196 147-345 426-652 (894)
388 PF11848 DUF3368: Domain of un 75.1 12 0.00025 20.6 5.0 32 287-318 13-44 (48)
389 smart00386 HAT HAT (Half-A-TPR 75.1 7.6 0.00016 18.4 4.3 29 8-37 1-29 (33)
390 KOG1308 Hsp70-interacting prot 74.4 7 0.00015 32.0 4.5 91 218-310 126-216 (377)
391 PF09986 DUF2225: Uncharacteri 74.4 37 0.00081 26.1 9.6 17 216-232 87-103 (214)
392 PF11838 ERAP1_C: ERAP1-like C 73.6 50 0.0011 27.2 20.1 81 152-235 146-230 (324)
393 KOG4507 Uncharacterized conser 73.3 23 0.00049 31.6 7.5 87 217-304 618-704 (886)
394 PF04762 IKI3: IKI3 family; I 73.2 96 0.0021 30.3 12.5 127 35-165 700-843 (928)
395 KOG2063 Vacuolar assembly/sort 73.2 89 0.0019 30.0 16.7 187 138-324 506-745 (877)
396 PF14561 TPR_20: Tetratricopep 72.9 22 0.00048 22.8 8.7 53 28-80 21-73 (90)
397 KOG0687 26S proteasome regulat 72.6 53 0.0011 27.0 13.6 136 96-235 66-210 (393)
398 PF11817 Foie-gras_1: Foie gra 72.3 23 0.0005 28.0 7.1 79 46-127 162-245 (247)
399 KOG1586 Protein required for f 72.2 45 0.00096 26.0 18.9 19 38-56 23-41 (288)
400 KOG0890 Protein kinase of the 71.8 1.5E+02 0.0033 31.9 22.9 153 34-195 1388-1542(2382)
401 KOG3364 Membrane protein invol 71.8 32 0.00068 24.1 7.5 70 203-273 29-103 (149)
402 PF04097 Nic96: Nup93/Nic96; 71.5 84 0.0018 28.9 19.7 41 35-77 117-157 (613)
403 KOG2034 Vacuolar sorting prote 71.4 95 0.0021 29.5 26.0 49 3-57 367-417 (911)
404 PF14561 TPR_20: Tetratricopep 71.2 24 0.00053 22.6 8.4 33 97-129 19-51 (90)
405 COG0735 Fur Fe2+/Zn2+ uptake r 70.8 35 0.00077 24.3 7.2 62 228-290 8-69 (145)
406 COG5159 RPN6 26S proteasome re 70.2 56 0.0012 26.3 16.1 125 106-231 9-150 (421)
407 PRK10564 maltose regulon perip 70.0 13 0.00028 30.0 5.1 30 279-308 260-289 (303)
408 KOG2908 26S proteasome regulat 69.4 64 0.0014 26.7 10.2 59 211-269 80-143 (380)
409 KOG2659 LisH motif-containing 68.3 53 0.0012 25.4 9.8 99 203-303 23-130 (228)
410 KOG0376 Serine-threonine phosp 68.1 22 0.00047 30.7 6.2 87 181-269 14-100 (476)
411 PF11817 Foie-gras_1: Foie gra 67.5 57 0.0012 25.8 8.4 19 36-54 17-35 (247)
412 KOG0991 Replication factor C, 67.5 58 0.0013 25.5 13.4 36 168-204 236-271 (333)
413 PF11663 Toxin_YhaV: Toxin wit 67.0 8.4 0.00018 26.7 3.1 32 287-320 106-137 (140)
414 KOG4567 GTPase-activating prot 66.4 58 0.0013 26.6 7.8 71 191-266 263-343 (370)
415 COG5108 RPO41 Mitochondrial DN 65.8 47 0.001 30.3 8.0 90 211-303 33-130 (1117)
416 PHA02875 ankyrin repeat protei 65.4 89 0.0019 26.9 11.1 213 73-312 7-231 (413)
417 KOG1464 COP9 signalosome, subu 65.3 69 0.0015 25.6 24.1 27 239-266 302-328 (440)
418 KOG1308 Hsp70-interacting prot 65.2 5.5 0.00012 32.5 2.3 90 112-205 126-216 (377)
419 COG5108 RPO41 Mitochondrial DN 64.9 69 0.0015 29.3 8.8 91 34-127 33-130 (1117)
420 PF09454 Vps23_core: Vps23 cor 64.6 25 0.00054 20.9 4.4 51 273-324 5-55 (65)
421 COG4976 Predicted methyltransf 64.4 19 0.0004 27.9 4.7 51 253-304 7-57 (287)
422 KOG3807 Predicted membrane pro 64.4 33 0.0007 28.2 6.3 106 10-129 232-340 (556)
423 PF11663 Toxin_YhaV: Toxin wit 64.2 8.2 0.00018 26.8 2.6 16 84-99 114-129 (140)
424 KOG4521 Nuclear pore complex, 63.5 1.6E+02 0.0035 29.2 14.0 55 103-159 986-1044(1480)
425 PF11848 DUF3368: Domain of un 63.4 23 0.0005 19.4 5.1 25 220-244 16-40 (48)
426 KOG0889 Histone acetyltransfer 63.0 2.7E+02 0.0059 31.7 15.0 18 4-21 2492-2509(3550)
427 cd08819 CARD_MDA5_2 Caspase ac 61.9 39 0.00084 21.5 7.5 14 255-268 50-63 (88)
428 PF09477 Type_III_YscG: Bacter 61.8 45 0.00098 22.2 9.2 79 151-236 21-99 (116)
429 PF10345 Cohesin_load: Cohesin 61.3 1.4E+02 0.003 27.6 31.2 331 8-339 153-605 (608)
430 KOG4567 GTPase-activating prot 60.5 94 0.002 25.5 9.4 43 50-93 264-306 (370)
431 KOG0376 Serine-threonine phosp 60.4 33 0.0007 29.7 5.9 105 35-146 10-115 (476)
432 COG0790 FOG: TPR repeat, SEL1 59.7 93 0.002 25.2 22.3 83 77-166 53-143 (292)
433 PRK11639 zinc uptake transcrip 59.2 69 0.0015 23.5 7.4 62 232-294 17-78 (169)
434 KOG0991 Replication factor C, 59.1 86 0.0019 24.6 13.5 92 146-240 169-272 (333)
435 KOG2471 TPR repeat-containing 59.1 1.3E+02 0.0028 26.6 9.3 107 144-252 248-380 (696)
436 KOG0128 RNA-binding protein SA 59.0 1.6E+02 0.0036 27.8 26.0 104 28-135 112-225 (881)
437 KOG2659 LisH motif-containing 58.3 86 0.0019 24.3 9.8 100 167-268 22-130 (228)
438 PF09454 Vps23_core: Vps23 cor 58.1 38 0.00082 20.2 4.5 44 66-110 9-52 (65)
439 PF08311 Mad3_BUB1_I: Mad3/BUB 57.9 60 0.0013 22.4 10.3 44 294-337 81-125 (126)
440 PF04910 Tcf25: Transcriptiona 57.7 1.2E+02 0.0026 25.8 17.6 30 168-197 37-66 (360)
441 KOG4642 Chaperone-dependent E3 57.5 93 0.002 24.5 11.2 81 41-126 22-104 (284)
442 PF09670 Cas_Cas02710: CRISPR- 57.1 1.2E+02 0.0027 25.8 11.9 57 143-200 138-198 (379)
443 PF10366 Vps39_1: Vacuolar sor 56.6 38 0.00082 22.7 4.8 25 139-163 42-66 (108)
444 PF00244 14-3-3: 14-3-3 protei 56.5 96 0.0021 24.4 12.6 58 141-198 6-64 (236)
445 COG5187 RPN7 26S proteasome re 56.1 1.1E+02 0.0024 24.9 14.1 111 123-235 102-221 (412)
446 PF02184 HAT: HAT (Half-A-TPR) 56.1 25 0.00053 17.4 3.4 24 9-34 2-25 (32)
447 KOG2297 Predicted translation 56.1 1.1E+02 0.0024 25.0 20.3 19 277-295 322-340 (412)
448 cd07153 Fur_like Ferric uptake 55.9 44 0.00094 22.5 5.2 49 246-294 5-53 (116)
449 PF11123 DNA_Packaging_2: DNA 54.9 46 0.001 20.2 5.5 32 80-112 12-43 (82)
450 PF13762 MNE1: Mitochondrial s 54.4 77 0.0017 22.6 10.9 81 174-254 42-128 (145)
451 PF10255 Paf67: RNA polymerase 54.1 1.4E+02 0.0031 25.7 12.8 59 140-198 126-191 (404)
452 PF01475 FUR: Ferric uptake re 54.0 41 0.00088 22.9 4.8 44 282-325 13-56 (120)
453 COG5187 RPN7 26S proteasome re 54.0 1.2E+02 0.0026 24.7 14.0 69 63-131 113-186 (412)
454 PF05944 Phage_term_smal: Phag 52.5 78 0.0017 22.1 7.2 30 244-273 51-80 (132)
455 COG4259 Uncharacterized protei 52.4 65 0.0014 21.1 5.5 54 259-314 55-108 (121)
456 COG0790 FOG: TPR repeat, SEL1 52.2 1.3E+02 0.0027 24.4 23.3 25 221-245 252-276 (292)
457 PF14669 Asp_Glu_race_2: Putat 52.0 1E+02 0.0022 23.3 15.1 25 176-200 137-161 (233)
458 KOG2396 HAT (Half-A-TPR) repea 52.0 1.7E+02 0.0037 25.9 22.0 253 9-269 297-558 (568)
459 PRK11639 zinc uptake transcrip 50.2 1E+02 0.0022 22.7 7.7 64 195-259 15-78 (169)
460 KOG3807 Predicted membrane pro 50.1 1.5E+02 0.0032 24.6 11.3 62 105-166 280-341 (556)
461 PF00244 14-3-3: 14-3-3 protei 50.1 1.2E+02 0.0027 23.7 10.8 59 104-163 5-64 (236)
462 COG5191 Uncharacterized conser 49.9 30 0.00065 28.1 4.0 78 238-317 104-182 (435)
463 PF02847 MA3: MA3 domain; Int 49.7 76 0.0016 21.1 7.2 19 213-231 9-27 (113)
464 PRK09462 fur ferric uptake reg 49.5 94 0.002 22.2 7.4 60 197-257 8-68 (148)
465 PF08311 Mad3_BUB1_I: Mad3/BUB 48.7 88 0.0019 21.6 9.2 43 154-196 81-124 (126)
466 PF14669 Asp_Glu_race_2: Putat 48.7 1.2E+02 0.0025 23.0 14.3 53 174-236 110-162 (233)
467 cd07153 Fur_like Ferric uptake 48.0 63 0.0014 21.7 5.0 49 211-259 5-53 (116)
468 KOG1839 Uncharacterized protei 48.0 3.1E+02 0.0067 27.7 11.8 156 145-300 941-1123(1236)
469 PF07720 TPR_3: Tetratricopept 47.7 38 0.00083 17.2 4.7 18 316-333 6-23 (36)
470 KOG0686 COP9 signalosome, subu 47.7 1.8E+02 0.004 25.0 15.9 95 29-126 150-255 (466)
471 KOG0686 COP9 signalosome, subu 47.2 1.9E+02 0.004 24.9 14.5 24 139-162 153-176 (466)
472 PF04910 Tcf25: Transcriptiona 47.0 1.8E+02 0.0039 24.7 21.8 57 143-199 110-167 (360)
473 KOG3824 Huntingtin interacting 46.9 35 0.00077 27.7 3.9 52 252-304 127-178 (472)
474 KOG1114 Tripeptidyl peptidase 46.9 2.9E+02 0.0062 27.0 11.1 130 7-150 1130-1281(1304)
475 PF12926 MOZART2: Mitotic-spin 46.7 74 0.0016 20.2 8.1 42 192-233 29-70 (88)
476 smart00804 TAP_C C-terminal do 46.4 23 0.00051 20.9 2.3 24 113-136 38-61 (63)
477 PF12926 MOZART2: Mitotic-spin 46.4 76 0.0016 20.2 8.6 43 86-128 29-71 (88)
478 KOG3677 RNA polymerase I-assoc 46.0 1.7E+02 0.0036 25.3 7.6 197 32-233 204-411 (525)
479 KOG2066 Vacuolar assembly/sort 46.0 2.7E+02 0.0058 26.4 23.5 72 4-82 366-440 (846)
480 PF05944 Phage_term_smal: Phag 45.4 90 0.002 21.8 5.3 31 278-308 50-80 (132)
481 KOG0687 26S proteasome regulat 45.3 1.8E+02 0.0039 24.2 15.1 25 102-126 106-130 (393)
482 KOG2066 Vacuolar assembly/sort 45.1 2.7E+02 0.006 26.3 24.4 151 36-198 363-532 (846)
483 PRK09462 fur ferric uptake reg 44.8 1.1E+02 0.0024 21.7 7.3 63 230-293 6-69 (148)
484 KOG2297 Predicted translation 44.3 1.8E+02 0.0039 23.9 18.0 21 206-226 321-341 (412)
485 PRK09857 putative transposase; 44.0 1.8E+02 0.0039 23.8 10.4 62 176-238 211-272 (292)
486 PF08780 NTase_sub_bind: Nucle 43.9 1.1E+02 0.0023 21.2 5.7 51 9-61 5-56 (124)
487 PF14929 TAF1_subA: TAF RNA Po 43.7 2.5E+02 0.0055 25.5 14.3 153 38-195 318-479 (547)
488 KOG0403 Neoplastic transformat 43.6 2.3E+02 0.0049 24.9 19.4 62 244-306 512-573 (645)
489 KOG1498 26S proteasome regulat 43.0 2.1E+02 0.0046 24.4 15.4 192 7-200 25-241 (439)
490 PHA00425 DNA packaging protein 42.7 81 0.0018 19.5 5.1 53 9-74 14-66 (88)
491 COG5116 RPN2 26S proteasome re 42.7 2.6E+02 0.0057 25.4 8.6 25 102-126 61-85 (926)
492 KOG1839 Uncharacterized protei 42.7 3.8E+02 0.0082 27.2 11.7 103 97-199 970-1085(1236)
493 PF02847 MA3: MA3 domain; Int 42.1 1E+02 0.0022 20.5 7.0 20 107-126 9-28 (113)
494 PF10255 Paf67: RNA polymerase 42.1 2.3E+02 0.005 24.5 14.9 95 33-127 79-191 (404)
495 PRK09857 putative transposase; 41.9 1.9E+02 0.0042 23.6 9.4 66 244-310 209-274 (292)
496 PF01475 FUR: Ferric uptake re 41.9 69 0.0015 21.7 4.5 44 212-255 13-56 (120)
497 KOG3677 RNA polymerase I-assoc 41.0 2.4E+02 0.0052 24.4 11.4 62 102-163 237-299 (525)
498 PHA02875 ankyrin repeat protei 40.8 2.4E+02 0.0051 24.3 12.0 12 74-85 74-85 (413)
499 KOG0551 Hsp90 co-chaperone CNS 40.8 1.5E+02 0.0032 24.7 6.5 97 254-350 59-158 (390)
500 PF13934 ELYS: Nuclear pore co 40.7 1.7E+02 0.0038 22.8 16.3 96 111-218 89-184 (226)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.7e-61 Score=429.86 Aligned_cols=350 Identities=20% Similarity=0.337 Sum_probs=339.5
Q ss_pred CcccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCC
Q 018743 1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80 (351)
Q Consensus 1 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (351)
|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|+.++.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCcC
Confidence 356889999999999999999999999999999999999999999999999999998 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 018743 81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159 (351)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (351)
+++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|... .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999763 468999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 018743 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 239 (351)
+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319 (351)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 319 (351)
+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcccCCCCccCC
Q 018743 320 AYNALGMTEAAQNLENKMIAMKENSGKKLIQC 351 (351)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~c 351 (351)
+|.+.|+.++|.+++++|.+.+..|+...|+|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999888766543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-58 Score=416.10 Aligned_cols=345 Identities=23% Similarity=0.336 Sum_probs=328.2
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCC--------------------------------CCHHHHHHHHHHHhccCChHHHHH
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLK--------------------------------PSVDVYTALVSAYGQSGLLDEAFS 50 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~a~~ 50 (351)
.|++.|++++|.++|++|.+.|+. |+..+|+.++.+|++.|+++.|.+
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 345667777777777777776642 688999999999999999999999
Q ss_pred HHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 018743 51 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130 (351)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 130 (351)
+|+.|.+ .|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.
T Consensus 459 lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~- 536 (1060)
T PLN03218 459 VLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK- 536 (1060)
T ss_pred HHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-
Confidence 9999998 89999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 018743 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL--MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208 (351)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 208 (351)
|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 6999999999999999999999999999999976 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (351)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCCcc
Q 018743 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349 (351)
Q Consensus 289 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 349 (351)
.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|...+..|+...|
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999888876554
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.2e-53 Score=374.61 Aligned_cols=333 Identities=16% Similarity=0.251 Sum_probs=199.2
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 84 (351)
.+.++++.+.+++..|.+.|+.||..+|+.++..|++.|+++.|.++|+.|. .||..+|+.++.+|++.|++++|
T Consensus 134 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 134 IALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHH
Confidence 3334444444444444444444444444444444444444444444444443 13444444444444444444444
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743 85 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164 (351)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (351)
.++|++|.+.|+.|+..+|+.++.++...|..+.+.+++..+.+. |..||..+++.++.+|++.|++++|.++|++|.
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~- 286 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP- 286 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh-CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-
Confidence 444444444444444333333333333333333333333333222 344555556666667777777777777777664
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 018743 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244 (351)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 244 (351)
++|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..++
T Consensus 287 ---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 287 ---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred ---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 35666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 018743 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324 (351)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 324 (351)
+.|+.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 7777777777777777777777653 466677777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHH-hcccCCCCccCC
Q 018743 325 GMTEAAQNLENKMIA-MKENSGKKLIQC 351 (351)
Q Consensus 325 g~~~~A~~~~~~~~~-~~~~~~~~~~~c 351 (351)
|+.++|.++|++|.+ .+..|+...|.|
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 777777777777765 355555544443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-52 Score=373.03 Aligned_cols=329 Identities=20% Similarity=0.325 Sum_probs=197.7
Q ss_pred cccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCH
Q 018743 2 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81 (351)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (351)
.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+ .|..|+..+|+.++.+|++.|+.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcH
Confidence 45677777777777777775 35777777777777777777777777777766 55566555555544444444444
Q ss_pred HHHHHHHHHHHHcCCCC-------------------------------CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 018743 82 DLIEKILAEMSYLGIEC-------------------------------SAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130 (351)
Q Consensus 82 ~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 130 (351)
+.+.+++..+.+.|+.| |..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~- 319 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS- 319 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 44444444444444444 5555555555555555555555555555433
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 018743 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210 (351)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (351)
|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+++.++.+|++.|++++|.++|+.|.+ ||..+|+
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n 395 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWN 395 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHH
Confidence 355555555555555555555555555555555555555555555555555555555555555555532 4555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh-cCCccCHHhHHHHHHHHHhc
Q 018743 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQA 289 (351)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 289 (351)
.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .++.|+..+|+.++.+|++.
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666653 45566666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 290 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
|++++|.+++++| ++.|+..+|++++.+|...|+.+.|..+++++.+.+|.
T Consensus 476 G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 476 GLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred CCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 6666666665543 34566666666666666666666666666666555544
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.1e-52 Score=378.15 Aligned_cols=338 Identities=24% Similarity=0.309 Sum_probs=209.8
Q ss_pred cccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCH
Q 018743 2 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81 (351)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (351)
.+|++.|++++|.++|++|. .||..+||.+|.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|++.|+.
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCh
Confidence 45666777777777777665 34666777777777777777777777777766 56677777777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743 82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161 (351)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (351)
+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777777777777777777777777777666666666666662 34556666666666666666666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH-------------
Q 018743 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY------------- 228 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------------- 228 (351)
|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|..|+..+|+.++.+|++.|++++|.++
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~ 459 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHH
Confidence 6666666666666666666666666666666666665555555555555555555555555554444
Q ss_pred ------------------HHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC------------------
Q 018743 229 ------------------FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV------------------ 272 (351)
Q Consensus 229 ------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------ 272 (351)
|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence 444443 3455555554444433333333333333322222221
Q ss_pred ------------ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H
Q 018743 273 ------------ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI-A 339 (351)
Q Consensus 273 ------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 339 (351)
.||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +
T Consensus 539 ~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 539 RMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred CHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 345556666666666777777777777777777777777777777777777777777777777776 4
Q ss_pred hcccCCCCccC
Q 018743 340 MKENSGKKLIQ 350 (351)
Q Consensus 340 ~~~~~~~~~~~ 350 (351)
.+..|+...|.
T Consensus 619 ~gi~P~~~~y~ 629 (857)
T PLN03077 619 YSITPNLKHYA 629 (857)
T ss_pred hCCCCchHHHH
Confidence 45555544443
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-50 Score=369.48 Aligned_cols=337 Identities=17% Similarity=0.202 Sum_probs=176.9
Q ss_pred cccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCc------------------
Q 018743 2 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP------------------ 63 (351)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------ 63 (351)
.+|++.|++++|+++|++|...|+.||..+|+.++.+|+..++++.+.+++..+.+ .|+.|
T Consensus 160 ~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH-cCCCcccchHhHHHHHHhcCCCH
Confidence 45677777777777777777777777666665544444443333333333333333 33333
Q ss_pred -------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 018743 64 -------------DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130 (351)
Q Consensus 64 -------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 130 (351)
|..+|+.++.+|++.|++++|.++|++|...|+.||..||+.++.+|.+.|+.+.|.+++..+.+.
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~- 317 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT- 317 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh-
Confidence 344444444444444444444444444444444444444444444444444444444444444333
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 018743 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210 (351)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (351)
|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~ 393 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHH
Confidence 344444444444444444444444444444443 2344444445555555555555555555555445555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290 (351)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 290 (351)
.++.+|++.|+++.|.++++.|.+.|+.|+..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|
T Consensus 394 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g 469 (857)
T PLN03077 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNN 469 (857)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCC
Confidence 55555555555555555555555555555555555555555555555555555555443 23334444444444444
Q ss_pred CHHHHHHHHHHHHhcCCC--------------------------------------------------------------
Q 018743 291 DVEKMGELFLTMKERHCV-------------------------------------------------------------- 308 (351)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~-------------------------------------------------------------- 308 (351)
+.++|.++|++|.. ++.
T Consensus 470 ~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 470 RCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444432 123
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCCcc
Q 018743 309 ---PDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349 (351)
Q Consensus 309 ---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 349 (351)
||..+|+.++.+|.+.|+.++|.++|++|.+.+..|+...|
T Consensus 549 ~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 549 SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred hcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 34455677777777788888888888888887777776554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=7.9e-26 Score=210.43 Aligned_cols=327 Identities=13% Similarity=0.058 Sum_probs=194.4
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
+.+.|++++|..+++++.+.++. +...+..++..+...|++++|+++++.+.+. .+.+...|..+..++...|++++
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 44566677777777766665433 5556666666666667777777766666642 24455566666666666667777
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
|...++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|.++++.+.
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 766666666554 3455566666666666666666666666665542 4445566666666666666666666666665
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243 (351)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (351)
... +.+...+..+...+...|++++|...++.+.... |+..++..++.++...|++++|.+.+..+.+.. +.+...
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 544 3445555556666666666666666666665543 223444555566666666666666666665543 445555
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (351)
+..+...|...|++++|...|+++.+..+. ++.+++.+...+...|+ .+|+..++++.+.. +-++.++..+...+..
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 566666666666666666666666555433 45555555555555555 55556555555431 2233444555555555
Q ss_pred cCCHHHHHHHHHHHHHhccc
Q 018743 324 LGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 324 ~g~~~~A~~~~~~~~~~~~~ 343 (351)
.|++++|.+.++++++.+|.
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCC
Confidence 56666666666666555554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.6e-25 Score=208.37 Aligned_cols=322 Identities=11% Similarity=0.026 Sum_probs=182.0
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
|.+.|++++|..+++.+.+..+. +..+|..+..++...|++++|+..|+.+.+.. +.+...+..+...+...|++++
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHH
Confidence 34556666666666665554322 55556666666666666666666666655421 2334455555555666666666
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.++.+.
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666655543 3345555566666666666666666666665442 3444555555556666666666666666655
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243 (351)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (351)
..+ |+..++..++.++.+.|++++|...++.+.+..+ .+...+..+...+...|++++|...|+++.+.. +.+...
T Consensus 731 ~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 806 (899)
T TIGR02917 731 KRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVV 806 (899)
T ss_pred hhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 432 3334455555566666666666666666555432 245555555566666666666666666665543 445555
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (351)
+..+...+...|+ .+|...++++.+..+. ++.++..+...+...|++++|.++|+++.+.+. .+..++..+..++.+
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLA 883 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHH
Confidence 5566666666666 5566666665554433 444555555556666666666666666665432 255555566666666
Q ss_pred cCCHHHHHHHHHHHH
Q 018743 324 LGMTEAAQNLENKMI 338 (351)
Q Consensus 324 ~g~~~~A~~~~~~~~ 338 (351)
.|++++|.+++++|+
T Consensus 884 ~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 884 TGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHh
Confidence 666666666666554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=4e-25 Score=185.84 Aligned_cols=303 Identities=13% Similarity=0.054 Sum_probs=248.0
Q ss_pred HHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHh
Q 018743 35 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS---AVTYNTIIDGYG 111 (351)
Q Consensus 35 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 111 (351)
....+...|++++|+..|.++.+.. +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999742 44566888999999999999999999999987542221 356788899999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCH
Q 018743 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD----IQTLNILTKSYGRAGMY 187 (351)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 187 (351)
+.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999998752 56677899999999999999999999999987653322 22456678888999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 018743 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267 (351)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 267 (351)
++|...++++.+... .+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++
T Consensus 197 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999987643 2566778888999999999999999999987642323567888999999999999999999999
Q ss_pred hhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcccC
Q 018743 268 ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA---LGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~ 344 (351)
.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|++....+
T Consensus 276 ~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 276 LEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 8875 45556688999999999999999999999875 6888889888887765 568999999999999866554
Q ss_pred CC
Q 018743 345 GK 346 (351)
Q Consensus 345 ~~ 346 (351)
++
T Consensus 352 ~p 353 (389)
T PRK11788 352 KP 353 (389)
T ss_pred CC
Confidence 44
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=1.8e-24 Score=181.89 Aligned_cols=302 Identities=13% Similarity=0.102 Sum_probs=252.9
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCc--cHHHHHHHHHHHHhcCCH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP--DVYTYSILIKSCTKFHRF 81 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 81 (351)
+...|++++|...|+++.+.++. +..++..+...+...|++++|..+++.+.......+ ....+..+...+.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34679999999999999998654 778999999999999999999999999987322111 135678888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC---HhHHHHHHHHHhcCCCHHHHHHH
Q 018743 82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMISAYGNSGNIEKMEKW 158 (351)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~ 158 (351)
+.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.....+. ...+..+...+.+.|++++|.+.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999998764 567889999999999999999999999999876422222 12455677788999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 018743 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238 (351)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 238 (351)
++++.+.. +.+...+..+...+.+.|++++|.+.++++...+......+++.++.++...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 99998754 44566788899999999999999999999987644433567888999999999999999999999886 4
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHH
Q 018743 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ---AGDVEKMGELFLTMKERHCVPDNI 312 (351)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~ 312 (351)
|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 66667788999999999999999999998876 4677888888877765 568999999999999888887776
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=1e-23 Score=185.67 Aligned_cols=331 Identities=10% Similarity=-0.001 Sum_probs=276.5
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
+.+.|++++|..+++......+. +...+..++.+....|+++.|+..++++.+.. +.+...+..+...+...|++++
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHH
Confidence 45789999999999999988766 67777778888889999999999999999753 4456778888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.
T Consensus 129 Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 129 VADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 999999999875 5577888999999999999999999999887653 3344444444 34788999999999999987
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCc
Q 018743 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEK----MEEYFKKMKHRGMKP 239 (351)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~ 239 (351)
.....++......+...+...|++++|...++......+. +...+..+...+...|++++ |...+++..+.. +.
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~ 282 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD 282 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence 7643344455566678889999999999999999887543 67788889999999999986 899999998874 55
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHH
Q 018743 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-ITFATMI 318 (351)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~ 318 (351)
+...+..+...+...|++++|...+++..+..+. +...+..+..++.+.|++++|...|+++.+. .|+. ..+..+.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a 359 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAA 359 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHH
Confidence 6788999999999999999999999999988765 6777888999999999999999999999875 4444 3344456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 319 QAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
.++...|+.++|...|+++++..|....
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 7899999999999999999998887544
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=3.4e-21 Score=170.29 Aligned_cols=330 Identities=12% Similarity=-0.014 Sum_probs=206.7
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
|.+.|++++|+..|++.++. .|++..|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 55678888888888887765 4566777778888888888888888888877632 3345566666667777777666
Q ss_pred HHHHHH--------------------------------------------------------------------------
Q 018743 84 IEKILA-------------------------------------------------------------------------- 89 (351)
Q Consensus 84 a~~~~~-------------------------------------------------------------------------- 89 (351)
|...|.
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 654332
Q ss_pred --------------------------HHHHcC--CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH
Q 018743 90 --------------------------EMSYLG--IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141 (351)
Q Consensus 90 --------------------------~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 141 (351)
.....+ .+.....+..+..++...|++++|+..+++.++.. +.....|..
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~ 370 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIK 370 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHH
Confidence 222211 01122334445555556666666666666666542 333445666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 018743 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221 (351)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (351)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+..++.+.|+
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCC
Confidence 6666666777777777777666543 344566666666777777777777777776665332 45556666666777777
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHH------hHHHHHHHHHhcCCHHHH
Q 018743 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP------FFNCIISAYGQAGDVEKM 295 (351)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a 295 (351)
+++|+..+++..+.. +.+...+..+...+...|++++|...|++.....+..+.. .++.....+...|++++|
T Consensus 449 ~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 449 IASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 777777777766542 4455666777777777777777777777766554321111 111122223335777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
.+++++..... +.+...+..+...+.+.|++++|++.|+++.+....
T Consensus 528 ~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 528 ENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 77777766542 223445677777888888888888888877766543
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1e-20 Score=177.73 Aligned_cols=333 Identities=12% Similarity=0.064 Sum_probs=239.2
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHH------------HH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS------------IL 71 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l 71 (351)
+...|++++|+..|++..+..+. +..++..+..++.+.|++++|+..|++..+.....+....|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 45679999999999999987655 889999999999999999999999999887432222222221 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHH---------
Q 018743 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSM--------- 142 (351)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------- 142 (351)
...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCH
Confidence 345678999999999999999875 5577788889999999999999999999998763 3333333322
Q ss_pred ---------------------------------HHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018743 143 ---------------------------------ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189 (351)
Q Consensus 143 ---------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 189 (351)
...+...|++++|++.+++..+.. +.+...+..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 233446788888888888887754 4456677788888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----------------------------------
Q 018743 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR---------------------------------- 235 (351)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------- 235 (351)
|...++.+.+..+. +...+..+...+...++.++|...++.+...
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 99999888765332 3332222222333344444444333321100
Q ss_pred -----CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018743 236 -----GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310 (351)
Q Consensus 236 -----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 310 (351)
..+.+...+..+...+.+.|++++|...|+.+.+..+. +...+..++..+...|++++|++.++.+.+. -+.+
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~ 670 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDS 670 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCC
Confidence 12445556667777788888888888888888877655 6778888888888888888888888877754 1234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 311 NITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
...+..+..++...|++++|.+++++++...+..
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 5566677778888888888888888888765543
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=9.2e-21 Score=167.16 Aligned_cols=332 Identities=11% Similarity=-0.003 Sum_probs=267.3
Q ss_pred cccCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCH
Q 018743 4 LGKCKQPEQASLLFEVMLSDG--LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (351)
+.++.+++..--+|....+.. -..+..-...++..+.+.|++++|+.+++...... +-+...+..++.+....|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCH
Confidence 445566666555555443321 11133345556778889999999999999998743 33455666777778889999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743 82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161 (351)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (351)
+.|...++++.... |.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 99999999999886 5678889999999999999999999999998863 55677888999999999999999999998
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 018743 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 241 (351)
+.... +.+...+..+ ..+...|++++|...++.+......++...+..+..++...|++++|...++++.+.. +.+.
T Consensus 170 ~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 170 QAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 87654 2333344333 3478899999999999998776544455555666788899999999999999999875 5567
Q ss_pred HHHHHHHHHHHhcCCHhH----HHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743 242 ITYCSLVSAYSKAGLIMK----VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317 (351)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 317 (351)
..+..+...+...|++++ |...++++.+..+. +...+..+...+...|++++|+..+++..+.. +.+...+..+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 888899999999999986 89999999988765 78899999999999999999999999999863 3346677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743 318 IQAYNALGMTEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 345 (351)
..++.+.|++++|...+++++..+|...
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 9999999999999999999998877653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=5e-22 Score=162.31 Aligned_cols=331 Identities=15% Similarity=0.116 Sum_probs=258.4
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHH----------------
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT---------------- 67 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------------- 67 (351)
+-..|+++.|+.+++.+.+..+. .++.|..+..++...|+.+.|.+.|....+. .|+...
T Consensus 126 ~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~ 201 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLE 201 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccc
Confidence 44679999999999999998666 7889999999999999999999888887764 343322
Q ss_pred -------------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 018743 68 -------------------YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128 (351)
Q Consensus 68 -------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 128 (351)
|+.|...+..+|+...|++.|++..+.. |--...|..|...|...+.+++|...+.+...
T Consensus 202 ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 202 EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 3333333444666677777777766654 33356777777778788888888887777766
Q ss_pred cCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 018743 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208 (351)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 208 (351)
.. +....++..+...|...|.++-|+..|++.++.. +.-...|+.+..++-..|+..+|...+......... ....
T Consensus 281 lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hada 356 (966)
T KOG4626|consen 281 LR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADA 356 (966)
T ss_pred cC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHH
Confidence 52 4445567777777888888888888888887743 233567899999999999999999999888776433 4667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (351)
.+.+...+...|.+++|..+|....+-. +--....+.|...|-+.|++++|...+++..+..+. -...|+.+...|..
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHH
Confidence 7888899999999999999998887752 334567888999999999999999999998876544 46688899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCC
Q 018743 289 AGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347 (351)
Q Consensus 289 ~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 347 (351)
.|+.+.|++.+.+.+.. .|. ...++.|...|..+|+..+|+.-+++.++.+|+.++.
T Consensus 435 ~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred hhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 99999999999999874 444 5678899999999999999999999999999887654
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1.5e-19 Score=169.96 Aligned_cols=323 Identities=9% Similarity=0.007 Sum_probs=222.3
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHH--------
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC-------- 75 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-------- 75 (351)
+.+.|++++|...|+++.+..+. +..++..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHH
Confidence 45789999999999999988654 77888889999999999999999999998743 33344444444433
Q ss_pred ----------------------------------HhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHH
Q 018743 76 ----------------------------------TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121 (351)
Q Consensus 76 ----------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 121 (351)
...|++++|...+++..+.. |.+...+..+...|.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 23455555555555555443 2234444455555555555555555
Q ss_pred HHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHHHhcCCHHHHHH
Q 018743 122 SFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI---------QTLNILTKSYGRAGMYDKMRS 192 (351)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~ 192 (351)
.++++.+.. +.+...+..+...+...++.++|+..++.+......++. ..+......+...|+.++|..
T Consensus 517 ~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 517 LMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 555554432 223333333333444455555555555543221111111 011233455666677777777
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272 (351)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 272 (351)
+++. .+++...+..+...+.+.|++++|+..|++..+.. +.+...+..++..+...|++++|.+.++.+.+..+
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 6651 23455667788899999999999999999999874 55788999999999999999999999999887654
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--VP---DNITFATMIQAYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 273 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 339 (351)
. +...+..+..++...|++++|.++++++..... +| +...+..+...+...|++++|+..|++++.
T Consensus 669 ~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 D-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred C-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 566777888899999999999999999987532 22 224566678889999999999999999975
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=3.5e-19 Score=157.61 Aligned_cols=308 Identities=10% Similarity=-0.006 Sum_probs=249.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743 31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110 (351)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (351)
.+......+.+.|++++|+..|++..+. .|+...|..+..++.+.|++++|+..++...+.. +.+...+..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4566788899999999999999999874 6788889999999999999999999999999876 55778999999999
Q ss_pred hhcCChHHHHHHHHHHHhcCCCC----------------------------CCHhHHHHHHH------------------
Q 018743 111 GKAKKFEEMESSFSAMVESGGCH----------------------------PDIFTLNSMIS------------------ 144 (351)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~----------------------------~~~~~~~~l~~------------------ 144 (351)
...|++++|+..|..+....+.. ++...+..+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 99999999987665543221111 00000000000
Q ss_pred ------------HH------hcCCCHHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 018743 145 ------------AY------GNSGNIEKMEKWYNEFNLMG-V-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204 (351)
Q Consensus 145 ------------~~------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 204 (351)
.. ...+++++|.+.|+.....+ . +.....+..+...+...|++++|...++...+..+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~- 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR- 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Confidence 00 12357889999999988754 2 234567888888899999999999999999886432
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284 (351)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (351)
....|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHH
Confidence 46678888899999999999999999998874 556788999999999999999999999999988765 6778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 285 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
++.+.|++++|+..|++..+. .+.+...+..+..++...|++++|++.|++.+...|....
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 999999999999999999875 3445788999999999999999999999999998876443
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=7.3e-19 Score=158.39 Aligned_cols=335 Identities=10% Similarity=-0.033 Sum_probs=207.6
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
+.+.|++++|..+|+...+..+. +...+..++.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++
T Consensus 59 ~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~ 134 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWD 134 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHH
Confidence 45667777777777777665433 56666677777777777777777777776532 33444 6666667777777777
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHH----------------------------------------
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF---------------------------------------- 123 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~---------------------------------------- 123 (351)
|+..++++.+.. |.+...+..+..++...+..++|++.+
T Consensus 135 Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 135 ELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 777777777664 334555555555555444444333333
Q ss_pred ------HHHHhcCCCCCCHh-HHH----HHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018743 124 ------SAMVESGGCHPDIF-TLN----SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRS 192 (351)
Q Consensus 124 ------~~~~~~~~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (351)
+.+.+.....|+.. .+. ..+..+...|++++|+..|+.+.+.+.+........+..+|...|++++|..
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 33332211111111 110 1122334557777788777777765422111122234667777788888888
Q ss_pred HHHHHHHcCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------Ccc---HHHHHHHHHHHHhcC
Q 018743 193 VMDFMQKRFFFP---TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-----------KPN---SITYCSLVSAYSKAG 255 (351)
Q Consensus 193 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g 255 (351)
.|+.+....... .......+..++...|++++|..+++.+..... .|+ ...+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 887776543211 123445555667777888888888877776420 122 123455666777778
Q ss_pred CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 018743 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335 (351)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (351)
+.++|+..++++....+. +...+..++..+...|++++|++.+++..... +.+...+..++..+...|++++|..+++
T Consensus 374 ~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 374 DLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 888888888887776555 57777777888888888888888888877652 2235555666667778888888888888
Q ss_pred HHHHhcccCC
Q 018743 336 KMIAMKENSG 345 (351)
Q Consensus 336 ~~~~~~~~~~ 345 (351)
++++..|+.+
T Consensus 452 ~ll~~~Pd~~ 461 (765)
T PRK10049 452 DVVAREPQDP 461 (765)
T ss_pred HHHHhCCCCH
Confidence 8887776654
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-20 Score=154.64 Aligned_cols=303 Identities=14% Similarity=0.148 Sum_probs=176.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA-VTYNTI 106 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 106 (351)
-.++|..+...+-..|++++|+..++.+.+.. +..+..|..+..++...|+.+.|.+.|.+..+.+ |+. ...+.+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcch
Confidence 46788889999999999999999999999742 3357789999999999999999999998888764 332 233334
Q ss_pred HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcC
Q 018743 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD-IQTLNILTKSYGRAG 185 (351)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 185 (351)
.......|+.++|...+.+.++.. +--..+|+.|...+-..|+...|+..|++..+.+ |+ ...|..|...|...+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHh
Confidence 444555666666666666665542 2233456666666666666666666666665432 22 334555555555555
Q ss_pred CHHHHHHHHHH----------------------------------HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 186 MYDKMRSVMDF----------------------------------MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231 (351)
Q Consensus 186 ~~~~a~~~~~~----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 231 (351)
.++.|...+.+ ..+..+. =+..|+.+..++-..|+..+|.+.|.+
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 55555555444 4433211 234455555555555555555555555
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-
Q 018743 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD- 310 (351)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~- 310 (351)
.+... +......+.|...+...|.+++|..+|....+..+. -...++.|...|-+.|++++|+..|++.+. +.|+
T Consensus 346 aL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f 421 (966)
T KOG4626|consen 346 ALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF 421 (966)
T ss_pred HHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH
Confidence 54432 223344455555555555555555555554443322 233445555555555555555555555554 3444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 311 NITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
...|+.+...|...|+.+.|...+.+++..+|.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 345555555555555555555555555555443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.9e-18 Score=155.68 Aligned_cols=335 Identities=10% Similarity=-0.020 Sum_probs=252.6
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (351)
+....|+.++|+++++...... +.+...+..+..++...|++++|.++|++..+.. +.+...+..+...+...|+++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHH
Confidence 4567899999999999998743 3367779999999999999999999999988743 445667788888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH--
Q 018743 83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN-- 160 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-- 160 (351)
+|...++++.+.. |.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 9999999998875 55666 8889999999999999999999998873 4555566666666666666665554443
Q ss_pred --------------------------------------------HHHhc-CCCCCHH-HHH----HHHHHHHhcCCHHHH
Q 018743 161 --------------------------------------------EFNLM-GVKADIQ-TLN----ILTKSYGRAGMYDKM 190 (351)
Q Consensus 161 --------------------------------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a 190 (351)
.+.+. ...|+.. .+. ..+..+...|++++|
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 33321 1112111 111 112345677899999
Q ss_pred HHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 018743 191 RSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP---NSITYCSLVSAYSKAGLIMKVDSILRQ 266 (351)
Q Consensus 191 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 266 (351)
...|+.+.+.+.. |+.. ...+..++...|++++|...|+++.+..... .......+..++...|++++|..+++.
T Consensus 257 ~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999998887532 3322 2225778899999999999999987653111 134566677788999999999999999
Q ss_pred hhhcCC-----------ccC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743 267 VENSDV-----------ILD---TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332 (351)
Q Consensus 267 ~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 332 (351)
+.+..+ .|+ ...+..+...+...|+.++|+++++++... .+.+...+..+...+...|++++|++
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 886542 122 234566778889999999999999999876 35567788899999999999999999
Q ss_pred HHHHHHHhcccCCC
Q 018743 333 LENKMIAMKENSGK 346 (351)
Q Consensus 333 ~~~~~~~~~~~~~~ 346 (351)
.+++++...|+...
T Consensus 415 ~l~~al~l~Pd~~~ 428 (765)
T PRK10049 415 ELKKAEVLEPRNIN 428 (765)
T ss_pred HHHHHHhhCCCChH
Confidence 99999998877543
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=5.8e-17 Score=144.01 Aligned_cols=333 Identities=12% Similarity=0.031 Sum_probs=198.7
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
..+.|+++.|+..|++..+..+.-.+.++ .++..+...|+.++|+..+++... ..+........+...+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 46789999999999999887544112344 788888888999999999998873 112333334444567888899999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
|.++|+++.+.. |.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999998876 456777778888888899999999999988765 4555555445455545666666888888887
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHH------------------------------------------------HH
Q 018743 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSV------------------------------------------------MD 195 (351)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------------------------------------------------~~ 195 (351)
+.. +.+...+..+..++.+.|-...|.++ ++
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 754 33444444444444433333222222 22
Q ss_pred HHHHc-CCCCCH-H----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743 196 FMQKR-FFFPTV-V----TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 196 ~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 269 (351)
.+... +..|.. . ...-.+.++...+++.++++.|+.+...+.+....+-..+..+|...+++++|+.+++.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 22211 011211 1 11123345556666666666666666555443444556666666666666666666666544
Q ss_pred cCC-----ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCCH---HHHHHHHHHHHHcCCHHHH
Q 018743 270 SDV-----ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC-----------VPDN---ITFATMIQAYNALGMTEAA 330 (351)
Q Consensus 270 ~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~g~~~~A 330 (351)
... .++......|..++...+++++|..+++++.+... .||+ ..+..++..+...|+..+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 321 11222234556666666666666666666654210 1221 1223344555566666666
Q ss_pred HHHHHHHHHhcccC
Q 018743 331 QNLENKMIAMKENS 344 (351)
Q Consensus 331 ~~~~~~~~~~~~~~ 344 (351)
.+.++++....|.+
T Consensus 436 e~~le~l~~~aP~n 449 (822)
T PRK14574 436 QKKLEDLSSTAPAN 449 (822)
T ss_pred HHHHHHHHHhCCCC
Confidence 66666665555544
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=3.1e-16 Score=142.27 Aligned_cols=329 Identities=12% Similarity=0.067 Sum_probs=245.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhcc-CCCCccHHHHHHHHHHHHhcCC---H
Q 018743 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV-SDCKPDVYTYSILIKSCTKFHR---F 81 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~---~ 81 (351)
..+...++...++.|.+..+. +......+.....+.|+.++|.++|+..... ....++......++..+.+.+. .
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 346677777777777776433 6777777777888899999999999988762 2123334445566666666654 2
Q ss_pred HHHHHH----------------------HHHHHHc-C-CCC--CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC
Q 018743 82 DLIEKI----------------------LAEMSYL-G-IEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135 (351)
Q Consensus 82 ~~a~~~----------------------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 135 (351)
..+..+ ++..... + .++ +...|..+..++.. ++.++|...+.+.... .|+
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd 508 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPD 508 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCc
Confidence 222222 1111111 1 134 67788888888876 8888999988888765 455
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 018743 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215 (351)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (351)
......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...++...+..+. ....+..+...
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~ 585 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQ 585 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHH
Confidence 544444555567899999999999987653 445555667778889999999999999998876422 33333344444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHH
Q 018743 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295 (351)
Q Consensus 216 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 295 (351)
....|++++|...+++..+. .|+...+..+...+.+.|++++|...+++.....+. +...++.+..++...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 55669999999999999886 457888999999999999999999999999988776 778889999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
+..+++..+.. +-+...+..+..++...|++++|...++++++..|....
T Consensus 663 i~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 663 REMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 99999998862 345778889999999999999999999999998886543
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1.8e-16 Score=140.99 Aligned_cols=335 Identities=12% Similarity=0.066 Sum_probs=231.4
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
|...|++++|+++|+++.+..+. ++..+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHH
Confidence 45668888888888888887666 6777777778888888888888888888763 4555555444444444566656
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHH-----------------------------------------
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESS----------------------------------------- 122 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----------------------------------------- 122 (351)
|++.++++.+.. |.+...+..+..++.+.|-...|.++
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 888888888775 44566665555555554443333332
Q ss_pred -------HHHHHhcCCCCCCH-hHH----HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018743 123 -------FSAMVESGGCHPDI-FTL----NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190 (351)
Q Consensus 123 -------~~~~~~~~~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (351)
++.+...-+..|.. ..| .-.+-++...|+..++++.|+.+...+.+....+-..+..+|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 23332221111221 111 123455667788888888888888877665666778888888888888888
Q ss_pred HHHHHHHHHcC-----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------Ccc--H-HHHHHHHHHH
Q 018743 191 RSVMDFMQKRF-----FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-----------KPN--S-ITYCSLVSAY 251 (351)
Q Consensus 191 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~--~-~~~~~l~~~~ 251 (351)
..+++.+.... ..++......|..++...+++++|..+++.+.+... .|| - ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 88888876543 122334356778888888888888888888876311 122 1 2334556677
Q ss_pred HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 018743 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331 (351)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 331 (351)
...|+..+|++.++.+....+. |......+...+...|.+.+|.+.++..... -+-+..+....+.++...|++++|.
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHH
Confidence 7888888888888888877666 8888888888888888888888888766654 2334556667778888888889888
Q ss_pred HHHHHHHHhcccCC
Q 018743 332 NLENKMIAMKENSG 345 (351)
Q Consensus 332 ~~~~~~~~~~~~~~ 345 (351)
.+.+.+++..|+..
T Consensus 505 ~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 505 LLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHhhCCCch
Confidence 88888888777755
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.84 E-value=1.7e-16 Score=132.47 Aligned_cols=286 Identities=10% Similarity=0.028 Sum_probs=224.2
Q ss_pred ccCChHHHHHHHHHhhccCCCCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHhhcCChH
Q 018743 41 QSGLLDEAFSTINDMKSVSDCKPDVYT-YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN--TIIDGYGKAKKFE 117 (351)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 117 (351)
..|+++.|.+.+....+. .+++.. |.....+..+.|+++.+..++.++.+. .|+..... .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 369999999888876652 222333 333344558999999999999999876 45544333 3467888999999
Q ss_pred HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHH
Q 018743 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI-------QTLNILTKSYGRAGMYDKM 190 (351)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a 190 (351)
.|...++++.+.. |.+......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+..
T Consensus 171 ~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 171 AARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998874 667778899999999999999999999999987654322 1233334444445556666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270 (351)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 270 (351)
.++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+.
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 6677666443 2347888889999999999999999999999884 5565322 233334569999999999999988
Q ss_pred CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 341 (351)
.+. |+..+..+.+.+.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|..++++.+..-
T Consensus 324 ~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 776 7888999999999999999999999999985 7899999999999999999999999999987754
No 25
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=1.2e-16 Score=134.07 Aligned_cols=293 Identities=10% Similarity=-0.002 Sum_probs=217.9
Q ss_pred hccCChHHHHHHHHHhhccCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHH
Q 018743 40 GQSGLLDEAFSTINDMKSVSDCKPDV-YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118 (351)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 118 (351)
...|+++.|.+.+.+..+. .|+. ..+-....+..+.|+.+.+.+++.+..+....+...........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 4579999999999887763 4543 33445567788899999999999998776422222344446788889999999
Q ss_pred HHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHH
Q 018743 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY---GRAGMYDKMRSVMD 195 (351)
Q Consensus 119 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~ 195 (351)
|...++.+.+.. |.+..+...+...+...|++++|.+.+..+.+.+..+.......-..++ ...+..+.+...+.
T Consensus 172 Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999998874 6677788899999999999999999999999887443332211111221 23333333344555
Q ss_pred HHHHcCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743 196 FMQKRFF---FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT---YCSLVSAYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 196 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~ 269 (351)
.+....+ +.++..+..+...+...|+.++|.+.+++..+.. |+... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 5544322 1378888899999999999999999999999873 33331 11111222345788889999998887
Q ss_pred cCCccCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743 270 SDVILDT--PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 270 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7655 56 6788999999999999999999996554445789998999999999999999999999997554
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=5.3e-16 Score=140.76 Aligned_cols=328 Identities=10% Similarity=0.003 Sum_probs=252.5
Q ss_pred cccCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCC---hHHHHHH----------------------HHHhh
Q 018743 4 LGKCKQPEQASLLFEVMLSD--GLKPSVDVYTALVSAYGQSGL---LDEAFST----------------------INDMK 56 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~ 56 (351)
..+.|+.++|.++|+..... +..++....+.++..|.+.+. ..++..+ .+...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 45789999999999998773 233455566688888888766 3333322 12221
Q ss_pred ccCCC-Cc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC
Q 018743 57 SVSDC-KP--DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH 133 (351)
Q Consensus 57 ~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 133 (351)
...+. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... +
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~ 539 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH---D 539 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---C
Confidence 11112 34 56778888877776 88889999888887663 55544445566667899999999999998554 4
Q ss_pred CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 018743 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVI 213 (351)
Q Consensus 134 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 213 (351)
|+...+..+..++.+.|++++|..+++...+.. +.+...+..+.......|++++|...+++..+.. |+...+..+.
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA 616 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARA 616 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 555566777888899999999999999998765 3344444444455556699999999999998764 5678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHH
Q 018743 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293 (351)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 293 (351)
.++.+.|++++|+..+++..... +.+...+..+..++...|++++|+..+++..+..+. +...+..+..++...|+++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999885 557788889999999999999999999999988776 7889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 294 KMGELFLTMKERHCVPDN-ITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 294 ~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
+|+..|++..+. .|+. .+.........+..+++.|.+-+++....++..
T Consensus 695 eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 695 ATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 999999999975 4543 455566677777888888888888877766543
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=3.5e-19 Score=142.33 Aligned_cols=263 Identities=14% Similarity=0.075 Sum_probs=112.6
Q ss_pred HHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhc
Q 018743 34 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113 (351)
Q Consensus 34 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (351)
.+...+.+.|++++|+++++........+.|...|..+...+...++++.|...++++...+ +-++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 56888889999999999996544311113345556666677778899999999999998876 3366777777777 688
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018743 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRS 192 (351)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (351)
+++++|.++++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+
T Consensus 91 ~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999887665 3456667788888999999999999999876533 34677788888999999999999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743 193 VMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272 (351)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 272 (351)
.+++..+..+. +......++..+...|+.+++..+++...+.. +.|+..+..+..++...|+.++|...+++..+..+
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99999887443 57778888999999999999988888887764 55667788899999999999999999999888766
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 273 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
. |+.....+..++...|+.++|.++..++..
T Consensus 246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T--HHHHHHHHHHHT-----------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 5 888889999999999999999999887653
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=6e-19 Score=140.97 Aligned_cols=262 Identities=13% Similarity=0.113 Sum_probs=113.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc
Q 018743 70 ILIKSCTKFHRFDLIEKILAEMSYLG-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148 (351)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (351)
.+...+.+.|++++|+++++...... .+.+...|..+.......++++.|.+.++++...+ +.+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cc
Confidence 45777889999999999997654443 24456666677777888999999999999998764 3355567777777 78
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHH
Q 018743 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEE 227 (351)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 227 (351)
.+++++|.+++....+. .++...+...+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999998876553 3566677788888999999999999999977543 34577888888999999999999999
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 018743 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307 (351)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 307 (351)
.+++..+.. |.|......++..+...|+.+++..+++...+.. ..++..+..+..++...|+.++|...|++..+. .
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 999999874 4467888899999999999999999998887765 336677889999999999999999999999875 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 308 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 339 (351)
+.|+.....+..++...|+.++|.++.+++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 45788888999999999999999999888764
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=2.7e-15 Score=118.23 Aligned_cols=333 Identities=17% Similarity=0.168 Sum_probs=159.9
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH--
Q 018743 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL-- 83 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 83 (351)
+.-..+.|..++++......+.+..+||.+|.+-.-... .+++.+|.. ..+.||..|+|+++++..+.|+++.
T Consensus 219 K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis-qkm~Pnl~TfNalL~c~akfg~F~~ar 293 (625)
T KOG4422|consen 219 KFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMIS-QKMTPNLFTFNALLSCAAKFGKFEDAR 293 (625)
T ss_pred HHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHH-hhcCCchHhHHHHHHHHHHhcchHHHH
Confidence 333444444444444444344444444444443222111 344444444 3445555555555555555554432
Q ss_pred --HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHH-HHHHHHHHHhcC-C--C----CCCHhHHHHHHHHHhcCCCHH
Q 018743 84 --IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE-MESSFSAMVESG-G--C----HPDIFTLNSMISAYGNSGNIE 153 (351)
Q Consensus 84 --a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~-~--~----~~~~~~~~~l~~~~~~~~~~~ 153 (351)
|.+++.+|++.|+.|...+|..++..+.+.++..+ +..++.++...- | + +.|...|...+..|.+..|.+
T Consensus 294 ~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~ 373 (625)
T KOG4422|consen 294 KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLE 373 (625)
T ss_pred HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHH
Confidence 33444455555555555555555555444444322 222222222110 0 1 112223334444444555554
Q ss_pred HHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 018743 154 KMEKWYNEFNLMG----VKAD---IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKME 226 (351)
Q Consensus 154 ~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 226 (351)
-|.++..-+.... +.|+ ..-|..+....+.....+.-...|+.|..+-.-|+..+...++++....++++-.-
T Consensus 374 LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ip 453 (625)
T KOG4422|consen 374 LAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIP 453 (625)
T ss_pred HHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHH
Confidence 4444443332211 1121 11233444444555555555555555555555556666666666666666666666
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcC-CH--------hH-----HHHHHHHh-----hhcCCccCHHhHHHHHHHHH
Q 018743 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAG-LI--------MK-----VDSILRQV-----ENSDVILDTPFFNCIISAYG 287 (351)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~-----a~~~~~~~-----~~~~~~~~~~~~~~l~~~~~ 287 (351)
++|.+++..|..-+......++..+++.. .. .. |..+++.. +...........+..+-.+.
T Consensus 454 Riw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 454 RIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLL 533 (625)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHH
Confidence 66666666554333333333333333322 00 00 11111110 11122334556777777888
Q ss_pred hcCCHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 288 QAGDVEKMGELFLTMKERHC-V---PDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 288 ~~g~~~~a~~~~~~~~~~~~-~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
+.|..++|.+++..+.+.+- . |......-++..-.+.+.+..|...++-|...+..
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 88888888888888854432 2 33333345556666777888888888877655443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.80 E-value=2.6e-15 Score=128.38 Aligned_cols=326 Identities=13% Similarity=0.079 Sum_probs=256.3
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 84 (351)
..+|++++|..++.++.+..+. +...|..|...|-+.|+.++++..+-..-.. .+.|...|..+.....+.|+++.|
T Consensus 150 farg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHH
Confidence 3459999999999999998766 8899999999999999999999888666543 356778899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCH-h----HHHHHHHHHhcCCCHHHHHHHH
Q 018743 85 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI-F----TLNSMISAYGNSGNIEKMEKWY 159 (351)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~ 159 (351)
.-.|.+.++.. |++...+-.-...|-+.|+...|...|.++.+.. +|.. . .-..+++.+...++-+.|.+.+
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999987 6677777777889999999999999999998874 3322 2 2223466777788889999999
Q ss_pred HHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------------------CHHhHHH
Q 018743 160 NEFNLMG-VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP---------------------------TVVTYNI 211 (351)
Q Consensus 160 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~ 211 (351)
+.....+ -..+...++.++..+.+...++.+.............+ +...+ .
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 8877622 23556678899999999999999998887776522212 22221 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc
Q 018743 212 VIETFGKAGHIEKMEEYFKKMKHRGMKP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289 (351)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (351)
++-++......+....+...+......| +...|..+..++...|.+.+|..+|..+......-+...|-.+.++|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2233444444445555555555555333 56788999999999999999999999999887766788999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 018743 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338 (351)
Q Consensus 290 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (351)
|.+++|.+.|+..... -+.+...-..|...+.+.|+.++|.+.++.+.
T Consensus 463 ~e~e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999975 23345556677788999999999999999876
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=5.3e-15 Score=123.60 Aligned_cols=285 Identities=9% Similarity=0.012 Sum_probs=222.8
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHhccCChHHHHHHHHHhhccCCCCccHHHHH--HHHHHHHhcCCHH
Q 018743 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTAL-VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS--ILIKSCTKFHRFD 82 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 82 (351)
-.|++++|.+.+....+... ++..+..+ ..+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHH
Confidence 36999999988887766532 23333333 45558999999999999999873 56654333 3356788999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCH------hHHHHHHHHHhcCCCHHHHH
Q 018743 83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI------FTLNSMISAYGNSGNIEKME 156 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~ 156 (351)
.|...++++.+.. |-+......+...|.+.|++++|.+++..+.+.....+.. .+|..++.......+.+...
T Consensus 171 ~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 171 AARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999887 6678889999999999999999999999998775332221 12334444444556667777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743 157 KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236 (351)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (351)
++++.+.+. .+.++.....+...+...|+.++|.++++...+. .|+.... ++.+....++++++.+..+...+..
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 777776443 3567888899999999999999999999998875 4455322 3444456699999999999998874
Q ss_pred CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
+-|...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 557778889999999999999999999999976 47788888999999999999999999998764
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.78 E-value=9.9e-15 Score=122.63 Aligned_cols=292 Identities=11% Similarity=0.009 Sum_probs=214.3
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccH--HHHHHHHHHHHhcCCHH
Q 018743 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV--YTYSILIKSCTKFHRFD 82 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 82 (351)
...|+++.|.+.+....+..+. ....+-....+..+.|+++.|.+.+.+..+. .|+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHH
Confidence 3579999999999998876433 2344455577888899999999999998763 3443 23444577788999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH-HHHHH---hcCCCHHHHHHH
Q 018743 83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS-MISAY---GNSGNIEKMEKW 158 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~---~~~~~~~~a~~~ 158 (351)
.|...++.+.+.. |-+..++..+...+...|++++|.+.+..+.+.+ . ++...+.. -..++ ...+..++..+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-L-FDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999986 5577888999999999999999999999998774 2 23332211 11111 222233333334
Q ss_pred HHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 159 YNEFNLMG---VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY-NIVIETFGKAGHIEKMEEYFKKMKH 234 (351)
Q Consensus 159 ~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (351)
+..+.... .+.+...+..+...+...|+.++|.+++++..+..+......+ ..........++.+.+.+.++...+
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 44444322 1247888899999999999999999999999886443221111 1222223445788899999988887
Q ss_pred cCCCccH--HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 235 RGMKPNS--ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 235 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
.. +-|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 62 4455 667789999999999999999999655544567888888999999999999999999998653
No 33
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=3.1e-14 Score=111.29 Aligned_cols=295 Identities=12% Similarity=0.090 Sum_probs=235.8
Q ss_pred ccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHH
Q 018743 41 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120 (351)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 120 (351)
..|+|.+|..+..+-.+ .+-. ....|..-..+..+.||.+.+-.++.+..+..-.++...+.+..+.....|+++.|.
T Consensus 96 ~eG~~~qAEkl~~rnae-~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAE-HGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhh-cCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 36999999999998776 4323 344566777788899999999999999988744667777788888999999999999
Q ss_pred HHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 018743 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-------TLNILTKSYGRAGMYDKMRSV 193 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 193 (351)
.-++++.+.. +.++........+|.+.|++..+..++..+.+.+.-.+.. ++..+++-....+..+.-...
T Consensus 174 ~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 174 ENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 9999998874 6677788999999999999999999999999988665543 455666655555555555555
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743 194 MDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273 (351)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 273 (351)
++..... .+.++..-..++.-+.+.|+.++|.++..+..+.+..|+ ...+ -.+.+.++.+.-++..+...+..+.
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhCCC
Confidence 5555443 344666677888899999999999999999999876666 2222 2355778888888888877665444
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCC
Q 018743 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347 (351)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 347 (351)
++..+..|...|.+.+.|.+|.+.|+...+. .|+..+|..+..++.+.|+..+|..+.++.+..-..|+.+
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~ 397 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNLP 397 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCc
Confidence 6688999999999999999999999988874 7899999999999999999999999999998766555543
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.1e-14 Score=114.75 Aligned_cols=306 Identities=13% Similarity=0.155 Sum_probs=232.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 107 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (351)
+..++..+|.++|+--..++|.+++++... ...+.+..+||.++.+-.-.. ..+++.+|....+.||..|+|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 788999999999999999999999999887 455889999999998754332 278999999999999999999999
Q ss_pred HHHhhcCChHHH----HHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHH-HHHHHHHHHh----cCC----CCCHHHH
Q 018743 108 DGYGKAKKFEEM----ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK-MEKWYNEFNL----MGV----KADIQTL 174 (351)
Q Consensus 108 ~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~ 174 (351)
.+..+.|+++.| .+++.+|.+. |+.|+..+|..++..+.+.++..+ +..++.++.. ..+ +.+...|
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKei-GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHh-CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999988754 5667778666 699999999999999999988755 4444444432 222 2345567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743 175 NILTKSYGRAGMYDKMRSVMDFMQKRF----FFPTV---VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247 (351)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (351)
..-+..|.+..+.+.|.++...+.... +.|+. .-|..+..+.++....+.-...|+.|+..-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888889999999998877665421 22332 33566777888889999999999999988888999999999
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC-CH-------------HHHHHHH-------HHHHhcC
Q 018743 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DV-------------EKMGELF-------LTMKERH 306 (351)
Q Consensus 248 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~-------------~~a~~~~-------~~~~~~~ 306 (351)
+++....|.++-.-+++..+...|...+...-..++..+++.. .. +-|..++ .++.+.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~- 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ- 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc-
Confidence 9999999999999999988887775545555444555454433 10 0111111 223333
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 341 (351)
.......+..+..+.+.|+.++|.+++.-..+.+
T Consensus 519 -~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 519 -DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred -cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 3455667777888999999999999999886544
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.1e-14 Score=110.63 Aligned_cols=300 Identities=14% Similarity=0.056 Sum_probs=225.3
Q ss_pred cCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHhhcCChHH
Q 018743 42 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS---AVTYNTIIDGYGKAKKFEE 118 (351)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 118 (351)
+++.++|.++|-.|.+. .+.+..+--+|.+.|.+.|..+.|+++.+.+.++.--+. ......|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46788999999999863 244556677888889999999999999998887521111 2344567788899999999
Q ss_pred HHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 018743 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD----IQTLNILTKSYGRAGMYDKMRSVM 194 (351)
Q Consensus 119 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 194 (351)
|..+|..+.+.+ .--..+...|+..|-...+|++|++.-+++.+.+-.+. ...|..+...+....+.+.|..++
T Consensus 126 AE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999997754 23345678889999999999999999998887764443 246788888888889999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc
Q 018743 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL 274 (351)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 274 (351)
.+..+.+.. ++..--.+.+.....|+++.|++.++...+.+...-+.+...|..+|...|+.++....+.++.+....+
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 998876544 4444445678888999999999999999988655567788899999999999999999999988765443
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcccCCCCccCC
Q 018743 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA---LGMTEAAQNLENKMIAMKENSGKKLIQC 351 (351)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~c 351 (351)
..-..+...-....-.+.|...+.+-... .|+...+..++..-.. .|...+...++++|+..... ..+.|+|
T Consensus 283 --~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~-~~~~YRC 357 (389)
T COG2956 283 --DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR-RKPRYRC 357 (389)
T ss_pred --cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh-hcCCcee
Confidence 34445555555555566777666665554 7899999988887553 35577778888888775544 3344554
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=2.4e-14 Score=108.77 Aligned_cols=295 Identities=13% Similarity=0.127 Sum_probs=224.3
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHHhcCCHHH
Q 018743 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD--VYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 83 (351)
-..+.++|.++|-+|.+..+. +.++--+|...|.+.|..++|+.+...+.+..+..-+ ......|.+-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 356789999999999987655 7778888999999999999999999999883322222 2234556677889999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCH---hHHHHHHHHHhcCCCHHHHHHHHH
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI---FTLNSMISAYGNSGNIEKMEKWYN 160 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~ 160 (351)
|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.++-+... ..|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998765 4467788889999999999999999999887765433332 236667777778889999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 018743 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 240 (351)
+..+.+ +..+..--.+.+.....|++++|.+.++.+.+.++.--..+...+..+|...|++++....+..+.+... .
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence 988765 4455555667888999999999999999999986655567788889999999999999999999888643 3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC
Q 018743 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ---AGDVEKMGELFLTMKERHC 307 (351)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~ 307 (351)
...-..+...-....-.+.|...+.+-.+. .|+...+..++..-.. .|...+-..+++.|....+
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 333444444444445566666666555444 5788888888886554 3456777777888875543
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=5.9e-16 Score=128.16 Aligned_cols=288 Identities=14% Similarity=0.065 Sum_probs=229.1
Q ss_pred CChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHhhcCChHHHH
Q 018743 43 GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI--ECSAVTYNTIIDGYGKAKKFEEME 120 (351)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 120 (351)
-+.++|+..|..+... +.-+..+...+..+|...+++++|.++|+.+.+... ..+..+|.+.+-.+-+ +-++
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 3567899999986542 233345667788899999999999999999987631 1256778777655432 1223
Q ss_pred HHH-HHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 121 SSF-SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199 (351)
Q Consensus 121 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (351)
..+ +.+... -+..+.+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+....
T Consensus 407 s~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 407 SYLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 322 333343 25567899999999999999999999999998754 33678888888888999999999999998876
Q ss_pred cCCCCCHHhHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH
Q 018743 200 RFFFPTVVTYNI---VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276 (351)
Q Consensus 200 ~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 276 (351)
. |+..|++ +.-.|.+.++++.|.-.|++..+-+ +-+.+....+...+-+.|+.++|+.+++++...++. |+
T Consensus 484 ~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 484 V----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred C----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 5 5555554 5678899999999999999999875 557778888889999999999999999999988877 66
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
..--.-+..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|.-|.+++|....
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 55556677888899999999999999985 4445667888889999999999999999999999888765
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=8.1e-15 Score=126.36 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299 (351)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 299 (351)
+..++|+++|.+.++.. |-|...-+.+.-.++..|++.+|..+|.++.+.... ...+|-.+.++|...|++..|+++|
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHH
Confidence 34667888888888764 667777888888889999999999999999887653 5667888999999999999999999
Q ss_pred HHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCCcc
Q 018743 300 LTMKER-HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKKLI 349 (351)
Q Consensus 300 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 349 (351)
+...+. .-..+......|.+++.+.|.+.+|.+.+..++...|..+...+
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKF 754 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHh
Confidence 987654 33456778889999999999999999999999888887765443
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.7e-15 Score=122.95 Aligned_cols=286 Identities=12% Similarity=0.022 Sum_probs=227.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCC-ccHHHHHHHHHHHHhcCCHHHHHHH
Q 018743 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCK-PDVYTYSILIKSCTKFHRFDLIEKI 87 (351)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 87 (351)
+.++|...|+.+.++- ..+..+...+..+|.+.+++++|..+|+.+.+..... -+...|.+.+-.+-+ .-+---+
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 5678999999966653 3366888889999999999999999999998753322 256778877654322 1122223
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 018743 88 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 167 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 167 (351)
-+.+.... +-.+.+|-++..+|.-+++.+.|++.|++.++.+ +....+|+.+..-+....++|.|...|+..+.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--- 483 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--- 483 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc---
Confidence 33444443 5678999999999999999999999999998863 44778899999999999999999999998764
Q ss_pred CCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 018743 168 KADIQTL---NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244 (351)
Q Consensus 168 ~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 244 (351)
.++..| --+.-.|.+.++++.|+-.|+...+-++. +.+....+...+-+.|+.++|+.++++..... +.|+..-
T Consensus 484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~ 560 (638)
T KOG1126|consen 484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCK 560 (638)
T ss_pred -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhH
Confidence 444444 45677899999999999999999887655 66677778888899999999999999998875 4466665
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018743 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV 308 (351)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 308 (351)
-.-+..+...+++++|+..++++++.-+. +...|..+...|.+.|+.+.|+.-|.-+.+...+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 56667778889999999999999988655 6778888999999999999999999988876433
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.2e-13 Score=108.60 Aligned_cols=259 Identities=10% Similarity=0.086 Sum_probs=202.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHhcCCCH
Q 018743 74 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNI 152 (351)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 152 (351)
++......+++..-.+.....|.+-+...-+....+.....++++|+.+|+++.+...... |..+|+.++-.-.....
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk- 314 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK- 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH-
Confidence 3444556667777777777777766666666666677788899999999999987653332 34566666543222111
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232 (351)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 232 (351)
+.++.+-...--+.-+.|...+.+.|.-.++.++|...|++..+.++. ....|+.+..-|....+...|++.++..
T Consensus 315 ---Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 ---LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred ---HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 111111111101334567788888999999999999999999987654 5677888899999999999999999999
Q ss_pred HHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 018743 233 KHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312 (351)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 312 (351)
++-+ |-|-..|-.|.++|.-.+.+.-|+-.|++.....+. |...|.+|..+|.+.++.++|++.|.+....|- .+..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchH
Confidence 9875 668899999999999999999999999999988766 899999999999999999999999999998653 3668
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743 313 TFATMIQAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
.+..|...|.+.++..+|...+++-++.
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8999999999999999999999888763
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1.2e-13 Score=110.08 Aligned_cols=333 Identities=11% Similarity=0.079 Sum_probs=199.9
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhc
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPS----VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF 78 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 78 (351)
++.+..++.+|+..|+..+..-+..+ ....+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-++...
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAI 322 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheec
Confidence 56778888999999888776522222 345666666788899999999999988763 67776655555566667
Q ss_pred CCHHHHHHHHHHHHHcCCCCC------------HhHHHHHHH--------------------------------------
Q 018743 79 HRFDLIEKILAEMSYLGIECS------------AVTYNTIID-------------------------------------- 108 (351)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~------------~~~~~~l~~-------------------------------------- 108 (351)
|+.++..+.|.+|......+| ....+.-+.
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~ 402 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC 402 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence 888888888888865422221 111111110
Q ss_pred -------------------------HHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH--------------------
Q 018743 109 -------------------------GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI-------------------- 143 (351)
Q Consensus 109 -------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-------------------- 143 (351)
-+.+.|+++.|++++.-+.++..-..+...-+.-+
T Consensus 403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 24455666666666665543321111111000000
Q ss_pred ---------------HHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 018743 144 ---------------SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208 (351)
Q Consensus 144 ---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 208 (351)
+.....|++++|.+.|++....+..-....|++ .-.+-..|+.++|+..|-++..- +..+...
T Consensus 483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~ev 560 (840)
T KOG2003|consen 483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEV 560 (840)
T ss_pred hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHH
Confidence 001124566666666666654432222222322 22344556666666666554332 1124444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (351)
.-.+...|....++..|++++.+.... ++.|+..+..|...|-+.|+-..|.+.+-+--+.-+ -+..+..-|...|..
T Consensus 561 l~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp-~nie~iewl~ayyid 638 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP-CNIETIEWLAAYYID 638 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC-cchHHHHHHHHHHHh
Confidence 445555666666666676666665443 455677777777777777777777776554443322 266677777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhcccC
Q 018743 289 AGDVEKMGELFLTMKERHCVPDNITFATMIQA-YNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 289 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
..-+++++.+|++..- +.|+..-|..++.. +.+.|++++|..+++..-+.-|+.
T Consensus 639 tqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred hHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 7777888888887654 57888888877755 446788888888888887766553
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=2.8e-13 Score=116.23 Aligned_cols=313 Identities=11% Similarity=0.105 Sum_probs=241.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 018743 30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109 (351)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (351)
...-.....+.-.|++++|.+++.++.+.. +.+...|.+|...|-..|+.+++...+-.+.... |.|...|..+...
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladl 216 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 333344444555599999999999999753 5677889999999999999999998887776665 6678999999999
Q ss_pred HhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcC
Q 018743 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ----TLNILTKSYGRAG 185 (351)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~ 185 (351)
..+.|.++.|.-.|.+.++.. +++....-.-+..|-+.|+...|...|.++.....+.|.. .....+..+...+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999874 6666666667788999999999999999998765323322 2234466677788
Q ss_pred CHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------C
Q 018743 186 MYDKMRSVMDFMQKR-FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG---------------------------M 237 (351)
Q Consensus 186 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~ 237 (351)
+-+.|.+.++..... +-..+...++.++..+.+...++.+......+.... +
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 889999888876552 223355678889999999999999999888877621 1
Q ss_pred CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC--CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018743 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD--VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315 (351)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 315 (351)
+++... ..+.-++......+....+.....+.. +.-+...|.-+..++...|++.+|+.+|..+......-+...|.
T Consensus 375 s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 375 SYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred Cccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 222222 233344455555555555555555554 44467789999999999999999999999999875555677999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccCCCCc
Q 018743 316 TMIQAYNALGMTEAAQNLENKMIAMKENSGKKL 348 (351)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 348 (351)
.+.++|...|.+++|.+.|++++...|......
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence 999999999999999999999999998876543
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=1.1e-12 Score=102.79 Aligned_cols=293 Identities=12% Similarity=0.098 Sum_probs=235.8
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 018743 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 85 (351)
-.|+|.+|.++..+-.+.+.. ....|..-+.+--+.|+.+.+-.++.+..+..| .++...+-+..+.....|+.+.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHH
Confidence 369999999999998888766 456666677888889999999999999988422 455666777778889999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCH-------hHHHHHHHHHhcCCCHHHHHHH
Q 018743 86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI-------FTLNSMISAYGNSGNIEKMEKW 158 (351)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 158 (351)
.-++++.+.+ +.++........+|.+.|++.+...++.++.+.+ .-.+. .+|..+++-....+..+.-...
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-CCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 9999999887 6678888999999999999999999999997764 43332 3577777777777777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 018743 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238 (351)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 238 (351)
|+..... .+.++..-..++.-+.++|+.++|.++.++..+++..|.. ...-.+.+-++.+.-.+..+.-.+.. +
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~ 325 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-P 325 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-C
Confidence 8776543 3556777788899999999999999999999888766552 22234567778887777777766542 5
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018743 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310 (351)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 310 (351)
.++..+..|...|.+.+.+.+|...|+...+. .|+...|+.+.+++.+.|+..+|.+..++....-.+|+
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 56688999999999999999999999977765 57899999999999999999999999998774433443
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.4e-13 Score=107.47 Aligned_cols=290 Identities=10% Similarity=0.046 Sum_probs=214.9
Q ss_pred HhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHhhcCCh
Q 018743 39 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE--CSAVTYNTIIDGYGKAKKF 116 (351)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 116 (351)
+-...+.+++++-.+.... .|++-+...-+....+.....|++.|+.+|+++.+..+- -|..+|..++-. +..+-
T Consensus 237 ~~el~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 3344456667766666666 555555544455555566788999999999999887411 256777776643 32221
Q ss_pred HHHHHHH-HHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018743 117 EEMESSF-SAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195 (351)
Q Consensus 117 ~~a~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (351)
.+..+ +...+.+..+ +.|...+.+.|+-.++.++|..+|++..+.+ +.....|+.+..-|....+...|..-++
T Consensus 314 --kLs~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 --KLSYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred --HHHHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 12222 2222222233 3567888888999999999999999998876 5566778888899999999999999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccC
Q 018743 196 FMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275 (351)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 275 (351)
...+-.+. |-..|-.+.++|...+.+.-|+-.|++..... |.|+..|..|..+|.+.++.++|++.|.+....+-. +
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e 465 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-E 465 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-c
Confidence 99887554 88899999999999999999999999998874 668899999999999999999999999998887644 6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743 276 TPFFNCIISAYGQAGDVEKMGELFLTMKER----HCVPD--NITFATMIQAYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 276 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 339 (351)
...+..|...|-+.++..+|...|+..++. |...+ .....-|..-+.+.+++++|.........
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 788999999999999999999999887652 32222 12222355667778888887766555543
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.4e-12 Score=104.74 Aligned_cols=326 Identities=12% Similarity=0.053 Sum_probs=188.6
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCC
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPS-VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHR 80 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 80 (351)
-+.+.|++++|++.|.+.++. .|+ +..|.....+|...|+|+++.+--....+. .|+ +..+..-.+++-..|+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHHHHHHHHHHHHHhhcc
Confidence 367889999999999999986 556 788999999999999999998887777763 454 3345555555656666
Q ss_pred HHHHH----------------------HHHHHH--------HH-cC--CCCCHhHHHHHHHHH-----------------
Q 018743 81 FDLIE----------------------KILAEM--------SY-LG--IECSAVTYNTIIDGY----------------- 110 (351)
Q Consensus 81 ~~~a~----------------------~~~~~~--------~~-~~--~~~~~~~~~~l~~~~----------------- 110 (351)
+++|+ ++++.. .+ .+ +-|+.....+....+
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 55432 222211 01 11 122222222222211
Q ss_pred ----------------------------------------------------------hhcCChHHHHHHHHHHHhcCCC
Q 018743 111 ----------------------------------------------------------GKAKKFEEMESSFSAMVESGGC 132 (351)
Q Consensus 111 ----------------------------------------------------------~~~~~~~~a~~~~~~~~~~~~~ 132 (351)
.-.|+...|.+-|+..+...
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-- 356 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-- 356 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--
Confidence 11233333333344433331
Q ss_pred CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 018743 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212 (351)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (351)
+.+...|-.+..+|....+.++..+.|+...+.+ +.++.+|..-...+.-.++++.|..-|++.....+. +...|-.+
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl 434 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQL 434 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHH
Confidence 1112224445555566666666666666655544 334455555555555566666666666666554322 34444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-------cCHHhHHHHHHH
Q 018743 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-------LDTPFFNCIISA 285 (351)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~ 285 (351)
..+..+.++++++...|++..+. +|..+..|+.....+...++++.|.+.|+...+..+. +.+.+...++..
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 55555666777777777776665 4555667777777777777777777777776654332 111112222222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
- =.+++..|..++++.++.+.. ....|..|...-.+.|+.++|+++|++...+
T Consensus 514 q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 514 Q-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred c-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1 226777777777777764221 3446777777777888888888888776544
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.67 E-value=6.4e-13 Score=115.97 Aligned_cols=269 Identities=11% Similarity=0.034 Sum_probs=192.1
Q ss_pred ccHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh---------cCChHHHHHHHHHHHh
Q 018743 63 PDVYTYSILIKSCTK-----FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK---------AKKFEEMESSFSAMVE 128 (351)
Q Consensus 63 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 128 (351)
.+...|...+++... .+++++|...|++..+.. |.+...|..+..++.. .+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 445556666665322 234678999999998875 4456677666665542 3458899999999988
Q ss_pred cCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 018743 129 SGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT 208 (351)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 208 (351)
.. +.+..++..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+..+. +...
T Consensus 333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 74 5677788888888999999999999999998865 556777888899999999999999999999887544 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (351)
+..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...++++....+. +....+.+...+..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhc
Confidence 33445556678999999999999877642224556777888888999999999999987765433 44556666667777
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743 289 AGDVEKMGELFLTMKERH-CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 289 ~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 342 (351)
.| ++|...++.+.+.. -.|....+ +...+.-.|+.+.+..+ +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 77 47777777766431 12222222 44456667777777766 77766543
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=8.7e-12 Score=103.85 Aligned_cols=332 Identities=10% Similarity=0.023 Sum_probs=186.8
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
|.+.+-++-|..+|...++.-+. +...|......--..|..+....+|++.... ++-....|.......-..||...
T Consensus 526 ~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ 602 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPA 602 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHH
Confidence 34455555566666655554322 4445555555545555555555556555542 23333334444444555566666
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
|..++....+.. +.+..+|..-+..-..+.+++.|..+|.+.... .|+...|..-+..-.-.++.++|++++++.+
T Consensus 603 ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~l 678 (913)
T KOG0495|consen 603 ARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI---SGTERVWMKSANLERYLDNVEEALRLLEEAL 678 (913)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 666666555554 335555555555555556666666666555433 3444445544444444555566666555554
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243 (351)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (351)
+. ++.-...|..+.+.+-+.++.+.|...|..-.+. ++..+..|-.+...--+.|.+-.|..++++..-.+ +-+...
T Consensus 679 k~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~l 755 (913)
T KOG0495|consen 679 KS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALL 755 (913)
T ss_pred Hh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchh
Confidence 42 1222334445555555555555555555443333 12233444444444445555555555555555443 334555
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcC-----------------------------CccCHHhHHHHHHHHHhcCCHHH
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSD-----------------------------VILDTPFFNCIISAYGQAGDVEK 294 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~ 294 (351)
|...|+.-.+.|..+.|..++.+..+.- ...|+.+.-.+...|....+++.
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444433211 12355666677778888888999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 295 MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 295 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
|.+.|.+..+.+ +.+..+|..+...+.++|.-+.-.+++++.....|..++
T Consensus 836 ar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~ 886 (913)
T KOG0495|consen 836 AREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGE 886 (913)
T ss_pred HHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Confidence 999999988763 334678888888888999888888899888887776554
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=5.5e-12 Score=104.99 Aligned_cols=332 Identities=9% Similarity=0.032 Sum_probs=275.2
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743 5 GKCKQPEQASLLFEVMLSDGLKP--SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (351)
-..|..-.+..+....+..|+.- --.+|..-.+.|.+.+.++-|..+|....+.. +-+...|......--..|..+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf--p~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF--PCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcCcHH
Confidence 34577777888888888777652 24588888899999999999999999998743 556677888877777889999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 018743 83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (351)
+...+|+++...- +.....|......+-..|+...|..++..+.+.. +.+...|.+.+..-..+.+++.|..+|.+.
T Consensus 568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999999998873 5567778888888888999999999999998874 557778999999999999999999999998
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 018743 163 NLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242 (351)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 242 (351)
.. ..|+..+|.--+...--.++.++|.+++++..+.. +.-...|-.+.+.+-+.++.+.|.+.|..-.+. ++-...
T Consensus 645 r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 645 RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 76 46788888777777778899999999999988862 224567888889999999999999999876655 355567
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----------------
Q 018743 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER----------------- 305 (351)
Q Consensus 243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------------- 305 (351)
.|..|...--+.|.+-+|..++++..-.++. +...|-..|+.-.+.|+.+.|..+..++.+.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence 7888888888899999999999999988887 8899999999999999999998877766532
Q ss_pred ------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 306 ------------HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 306 ------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
.+.-|+...-.+...|....++++|++.|++.++.+++.++
T Consensus 800 ~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 800 PQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred cccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 12345666777778888899999999999999999888765
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.65 E-value=5.5e-13 Score=116.37 Aligned_cols=247 Identities=10% Similarity=-0.009 Sum_probs=159.9
Q ss_pred HHHHHHHHHhhccCCCCccHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743 46 DEAFSTINDMKSVSDCKPDVYTYSILIKSCT---------KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116 (351)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (351)
++|++.|++..+.. +.+...|..+..++. ..+++++|...+++..+.+ |.+..++..+...+...|++
T Consensus 278 ~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 278 QQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 67888888877642 223445555544332 2345788888888888776 55777787787888888888
Q ss_pred HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196 (351)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (351)
++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..++..+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 88888888887763 5556677778888888888888888888887754 22233333344456667888888888888
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-cc
Q 018743 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKVDSILRQVENSDV-IL 274 (351)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~ 274 (351)
......+-++..+..+..++...|+.++|...+.++... .|+ ....+.+...+...| ++|...++.+.+..- .+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 766533224555666777788888888888888886654 333 334455555666666 467776666554211 11
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
....+ +...+.-.|+-+.+..+ +++.+.
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 11122 33344555666666555 777655
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=8.3e-13 Score=103.07 Aligned_cols=199 Identities=14% Similarity=0.049 Sum_probs=118.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 018743 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217 (351)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (351)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 34444555555555555555555554432 233444455555555555555555555555544322 3344555555566
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 018743 218 KAGHIEKMEEYFKKMKHRGM-KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296 (351)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 296 (351)
..|++++|...+.+...... +.....+..+...+...|++++|...+.+..+..+. +...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666654321 122344555666677777777777777777665443 4556667777777777888887
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743 297 ELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 297 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
..+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 777777765 3445566666677777777888887777766554
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=6.6e-13 Score=103.63 Aligned_cols=200 Identities=11% Similarity=0.046 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 018743 65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144 (351)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 144 (351)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence 4455566666666666666666666665543 3345566666666666677777777776666542 334455666666
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 018743 145 AYGNSGNIEKMEKWYNEFNLMGV-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223 (351)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (351)
.+...|++++|.+.+++...... +.....+..+...+...|++++|...+.+....... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 66666777777777766654321 122344555666666777777777777766654322 4455666667777777777
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 269 (351)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777776665 244555555666666677777777776666544
No 52
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.1e-12 Score=100.09 Aligned_cols=299 Identities=9% Similarity=-0.052 Sum_probs=230.1
Q ss_pred HhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHH
Q 018743 39 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118 (351)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 118 (351)
.+..++-..|...+-.+.....++-|+.....+...+...|+.++|...|+.....+ +-+........-.+.+.|+++.
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhh
Confidence 344555556666555555445567788889999999999999999999999887654 3344444444555678899998
Q ss_pred HHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198 (351)
Q Consensus 119 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (351)
...+...+.... ..+...|..-.......++++.|+.+-++.++.. +.+...+..-...+...++.++|.-.|+...
T Consensus 285 ~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 285 DSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 888888876652 3445556666666777889999999999988765 4556667666778889999999999999987
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH-HHHH-hcCCHhHHHHHHHHhhhcCCccCH
Q 018743 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV-SAYS-KAGLIMKVDSILRQVENSDVILDT 276 (351)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~ 276 (351)
...+ -+...|.-++.+|...|++.+|..+-....+. ++.+..+...+. ..+. ...--++|.++++...+..+. -.
T Consensus 362 ~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~ 438 (564)
T KOG1174|consen 362 MLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YT 438 (564)
T ss_pred hcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cH
Confidence 7633 37899999999999999999999887776654 345666666553 2232 233457899999988877654 45
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
...+.+...+...|..++++.++++.... .||....+.|.+.+...+.+++|.+.|..+++.+|.+..
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 67788889999999999999999998874 789999999999999999999999999999999987643
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=9.2e-12 Score=101.87 Aligned_cols=274 Identities=12% Similarity=0.041 Sum_probs=214.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 018743 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143 (351)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 143 (351)
+......-..-+...+++.+..++.+...+.. |+....+..-|.++...|+..+-..+-.++++. .|..+.+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence 33444445556777889999999999988876 667777777778899999988888888888876 466778899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 018743 144 SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223 (351)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (351)
-.|.-.|+.++|.++|.+....+ +.=...|..+...|.-.|.-++|...+....+.-.. ....+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHH
Confidence 88888999999999999876543 222456888888999999999999988877654211 1112233455678889999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc----CC--ccCHHhHHHHHHHHHhcCCHHHHHH
Q 018743 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS----DV--ILDTPFFNCIISAYGQAGDVEKMGE 297 (351)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~ 297 (351)
.|.++|.+..... |.|+...+.+.-.....+.+.+|..+|+..... +. ..-..+++.|.++|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999988763 557778888887777788999999999876521 11 1134578899999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 298 LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 298 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
.++..... .+-+..++.++.-.|...|+++.|.+.|++.+..+|..
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 99998876 45588899999999999999999999999998887764
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=1.8e-13 Score=104.36 Aligned_cols=241 Identities=10% Similarity=0.015 Sum_probs=205.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018743 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182 (351)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (351)
-+.+.++|.+.|.+.+|.+.|+..++. .|-+.||..+-.+|.+..++..|+.++.+-.+. .+.++....-..+.+.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 356889999999999999999998876 677788999999999999999999999988764 3556666677888899
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHH
Q 018743 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262 (351)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 262 (351)
..++.++|.++++...+... .++.....+...|.-.++++-|+.+|+++.+.|+ -++..|+.+.-+|...++++-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 99999999999999888643 3677777777888889999999999999999995 488999999999999999999999
Q ss_pred HHHHhhhcCCcc--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743 263 ILRQVENSDVIL--DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 263 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
-|++....--.| -..+|-.+.......|++..|.+.|+-....+ ..+...++.|.-.-.+.|+.++|..+++.+.+.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999877543333 35678888888899999999999999988764 336778999998899999999999999999998
Q ss_pred cccCCCCccC
Q 018743 341 KENSGKKLIQ 350 (351)
Q Consensus 341 ~~~~~~~~~~ 350 (351)
.|.--++.++
T Consensus 459 ~P~m~E~~~N 468 (478)
T KOG1129|consen 459 MPDMAEVTTN 468 (478)
T ss_pred Cccccccccc
Confidence 8876665543
No 55
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.1e-11 Score=107.66 Aligned_cols=258 Identities=14% Similarity=0.092 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-CCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 018743 82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYN 160 (351)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (351)
..+..++...-... +-++...+.|...|.-.|++..+..+...+....-.. .-...|..+..+|...|++++|..+|.
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444444443333 3355555666666666666666666666554432110 112235556666666666666666666
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHcC
Q 018743 161 EFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG----HIEKMEEYFKKMKHRG 236 (351)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~ 236 (351)
+..+..-......+.-+...+.+.|+.+.+...|+.+....+. +..+...+...|...+ ..+.|..++.+..+.-
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 6554321111223344556666666666666666666554222 4445555554444443 3344555555544432
Q ss_pred CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh----hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC
Q 018743 237 MKPNSITYCSLVSAYSKAGLIMKVDSILRQVE----NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER---HCVP 309 (351)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p 309 (351)
+.|...|..+...+... +...++..+..+. ..+..+.+...|.+.......|++..|...|...... ...+
T Consensus 411 -~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred -cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 33455555555544433 3333344444322 2333345566666666666666666666666665533 1111
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 310 D------NITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 310 ~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
| ..+-..+.+.+...++++.|.+.|..+++..|.
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 1 112233444555556666666666666655443
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=4.3e-11 Score=96.14 Aligned_cols=327 Identities=9% Similarity=0.053 Sum_probs=214.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 018743 7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86 (351)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 86 (351)
.|+...|.++|++-.+- .|+..+|++.|..=.+-+.++.|..+|++..-. .|++.+|-.....=.+.|....+..
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 47788888888887764 788888888888888888888888888888753 6888888777777777888888777
Q ss_pred HHHHHHHc-CC-CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC----------------------------------
Q 018743 87 ILAEMSYL-GI-ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG---------------------------------- 130 (351)
Q Consensus 87 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------------- 130 (351)
+|+...+. |- ..+...+.+....=.++..++.|.-+|+-.+..-
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 77766543 10 0112222332222223333444433333322210
Q ss_pred --------CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHH-------HHHHH---HHHHHhcCCHHHHHH
Q 018743 131 --------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ-------TLNIL---TKSYGRAGMYDKMRS 192 (351)
Q Consensus 131 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l---~~~~~~~~~~~~a~~ 192 (351)
..+.|-.+|--.+..-...|+.+...++|++.+.. ++|-.. +|..+ +-.-....+.+.+.+
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 12344455666666666677777777777777654 344221 11111 111124466777777
Q ss_pred HHHHHHHcCCCCCHHhHHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743 193 VMDFMQKRFFFPTVVTYNIV----IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 268 (351)
+++...+. ++....||..+ .....++.+...|.+++...+. ..|...+|...|..-.+.++++.+.+++++..
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77776663 22234444333 2333456777888888777654 47778888888888888888999999999888
Q ss_pred hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC-VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
..++. +..+|......-...|+.+.|..+|+-+++... ......|.+.|.-=...|.++.|..+++++++..+.
T Consensus 465 e~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 465 EFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred hcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 88776 778888888888888999999999988886532 122345666666667788899999999888876554
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.62 E-value=1.7e-11 Score=103.89 Aligned_cols=295 Identities=14% Similarity=0.125 Sum_probs=204.0
Q ss_pred HHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh--
Q 018743 35 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-- 112 (351)
Q Consensus 35 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 112 (351)
....+...|++++|++.++.-.. .+.............+.+.|+.++|..++..+.+.+ |.|..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 44566788999999999987654 233344556677788889999999999999999886 4566666666666522
Q ss_pred ---cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018743 113 ---AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188 (351)
Q Consensus 113 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (351)
..+.+...++++++... -|...+...+.-.+.....+ ..+..++..+...|+|+ +|+.+-..|......+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 23567778888888665 24333333333223322233 24455666677777543 4555555566555555
Q ss_pred HHHHHHHHHHHc----C----------CCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 018743 189 KMRSVMDFMQKR----F----------FFPTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252 (351)
Q Consensus 189 ~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 252 (351)
-...++...... + -+|+. .++..+...|...|++++|++++++.++.. |..+..|..-.+.+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 555555554322 1 12343 244566778888999999999999988873 334778888889999
Q ss_pred hcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HH--HHHHHHHHHc
Q 018743 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI------TF--ATMIQAYNAL 324 (351)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~ 324 (351)
+.|++.+|...++..+..+.. |..+-+..+..+.++|++++|.+++..+...+..|-.. .| .-...+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877 88888888889999999999999999888765433322 22 3445678899
Q ss_pred CCHHHHHHHHHHHHHh
Q 018743 325 GMTEAAQNLENKMIAM 340 (351)
Q Consensus 325 g~~~~A~~~~~~~~~~ 340 (351)
|++..|++.|..+.+.
T Consensus 319 ~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKH 334 (517)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999998888877654
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.6e-12 Score=102.72 Aligned_cols=288 Identities=11% Similarity=0.014 Sum_probs=231.0
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH
Q 018743 26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105 (351)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 105 (351)
.-++.......+-+...+++++..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- |..+.+|-+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 3466777777888889999999999999999865 4555556666778889999888888888888764 668899999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018743 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185 (351)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (351)
+...|...|+..+|.+.|.+..... +.-...|-.+...++-.|..++|+..+....+.= +....-+..+.--|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhc
Confidence 9999999999999999999987653 2234579999999999999999999998876531 112122333455677889
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC----ccHHHHHHHHHHHHhcCCHhH
Q 018743 186 MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR--GMK----PNSITYCSLVSAYSKAGLIMK 259 (351)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~ 259 (351)
+.+.|.+.|.+.....+. |+..++-+.......+.+.+|..+|+..+.. .+. --..+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 999999999998876443 7888888888888889999999999987621 111 123468899999999999999
Q ss_pred HHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323 (351)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (351)
|+..++......+. +..++.++.-.|...|+++.|++.|.+... +.|+..+-..++..+..
T Consensus 474 AI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 474 AIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999999988776 899999999999999999999999999886 57887777766665443
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.5e-11 Score=98.99 Aligned_cols=307 Identities=11% Similarity=0.002 Sum_probs=217.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743 30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 108 (351)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (351)
..+.....-|.++|++++|++.|.+.++. .|+ +..|.....+|...|+|+++.+--....+.+ |.-+..+..-..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRAS 191 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 34555667788999999999999999974 677 7889999999999999999998888877664 222445555556
Q ss_pred HHhhcCChHHHHHHHHH------------------------------HHh--cCCCCCCHhHHHHHHHHHhc--------
Q 018743 109 GYGKAKKFEEMESSFSA------------------------------MVE--SGGCHPDIFTLNSMISAYGN-------- 148 (351)
Q Consensus 109 ~~~~~~~~~~a~~~~~~------------------------------~~~--~~~~~~~~~~~~~l~~~~~~-------- 148 (351)
++-..|++++|+.-+.- -.+ +...-|+.....+....+..
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 66666666665432111 011 11223443333333322211
Q ss_pred CC--------------------CHHHHHHHHHHHHh---cCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 149 SG--------------------NIEKMEKWYNEFNL---MGVKAD---------IQTLNILTKSYGRAGMYDKMRSVMDF 196 (351)
Q Consensus 149 ~~--------------------~~~~a~~~~~~~~~---~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (351)
.+ .+..+...+.+-.. .....+ ..+.......+.-.|+.-.|..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 00 11222222211110 001111 12222233344556888899999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH
Q 018743 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276 (351)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 276 (351)
.+.....+ ...|-.+...|....+.++....|.+..+.+ +-++.+|..-.+.+.-.+++++|..-|++....++. +.
T Consensus 352 ~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~ 428 (606)
T KOG0547|consen 352 AIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NA 428 (606)
T ss_pred HHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hh
Confidence 88875543 3337778888999999999999999999876 557778888888888889999999999999998776 77
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 277 PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
..|-.+..+..+.++++++...|++.++. ++-.+..|+.....+...++++.|.+.|+..+.+.+..
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 78888888888999999999999999986 66668899999999999999999999999999998883
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=7.6e-11 Score=94.80 Aligned_cols=323 Identities=12% Similarity=0.107 Sum_probs=199.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHH
Q 018743 7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIE 85 (351)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~ 85 (351)
+++++.|..+|++.+..+.. +...|-..+..=.++..+..|..++++.... -|-+. .|-..+..=-..|+...|.
T Consensus 86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHH
Confidence 56788899999999887655 7788888888888888888888888887763 34432 3444444445677888888
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 018743 86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165 (351)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (351)
++|++-.+- .|+...|++.++.=.+.+.++.|..++++.+- +.|+..+|-.....-.+.|....+..+|+...+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 888877654 67888888888887788888888888888764 4677777777777777777777777777665432
Q ss_pred CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------------------------------------H
Q 018743 166 GV--KADIQTLNILTKSYGRAGMYDKMRSVMDFMQ--------------------------------------------K 199 (351)
Q Consensus 166 ~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------------------------------------~ 199 (351)
-- ..+...+.++...-.++..++.|..+|.-.. .
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 10 0112223333332223333333333322221 1
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH--HHHHHHH--------HHHhcCCHhHHHHHHHHhhh
Q 018743 200 RFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI--TYCSLVS--------AYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~--------~~~~~g~~~~a~~~~~~~~~ 269 (351)
.+ +-|-.+|--.++.-...|+.+...++|++.+.. ++|-.. .|...|- .-....+++.+.++++...+
T Consensus 317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11 224556666666666667777777777777654 344211 1111110 11123444444444443322
Q ss_pred ------------------------------------cCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 018743 270 ------------------------------------SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313 (351)
Q Consensus 270 ------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 313 (351)
.|..|...+|...|..-.+.++++.+..+|++.++.+ +-|..+
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~ 473 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYA 473 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHH
Confidence 1334556667777777777777777777777777653 335566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743 314 FATMIQAYNALGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 341 (351)
|......=...|+.|.|..+|+-+++..
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 7766666667777777777777776543
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=5.2e-13 Score=101.95 Aligned_cols=230 Identities=12% Similarity=0.004 Sum_probs=198.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc
Q 018743 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148 (351)
Q Consensus 69 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (351)
+.+.++|.+.|-+.+|.+.++...+. .|-+.||..|-+.|.+..+...|+.++.+-++. .+-++.....+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56778899999999999999988876 577889999999999999999999999998876 45555555667788888
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228 (351)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 228 (351)
.++.++|.++|+...+.. +.++.....+...|.-.++++.|...++++.+.|.. ++..|+.+.-+|.-.+++|-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999988765 566777777778888899999999999999999987 888999999999999999999999
Q ss_pred HHHHHHcCCCcc--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 229 FKKMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 229 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
|.+....--.|+ ...|-.+.......||+..|.+.|+-....+.. +...++.|.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999887644444 356888888888999999999999999988766 7889999999999999999999999988764
No 62
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=1e-11 Score=99.32 Aligned_cols=280 Identities=8% Similarity=0.068 Sum_probs=205.3
Q ss_pred HHhccCChHHHHHHHHHhhccCCCCccHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743 38 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI-LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116 (351)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (351)
.+.++|+++.|++++.-..+...-..+...-+. .+..+..-.++..|.++-+...... .-+......-...-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 477889999999999888763221222221121 1222222346777777777665443 33444443334445668999
Q ss_pred HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196 (351)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (351)
++|.+.+++.+... ..-......+...+-..|++++|+++|-++... +..+..+...+...|-...+..+|++++.+
T Consensus 507 dka~~~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 507 DKAAEFYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999987542 112222333344567889999999999887542 245677788888999999999999999887
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH
Q 018743 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT 276 (351)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 276 (351)
.... ++.|+...+.+...|-+.|+-..|.+.+-+--+. ++-+..+...|...|....-+++++..|++..- +.|+.
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 7654 5558999999999999999999999887665444 567889999999999999999999999998653 46788
Q ss_pred HhHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 018743 277 PFFNCIIS-AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326 (351)
Q Consensus 277 ~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 326 (351)
.-|..++. ++.+.|++.+|.++|+..... ++-|......|++.+...|.
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 88887765 556789999999999999876 77788899999998888875
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=5e-11 Score=101.05 Aligned_cols=290 Identities=15% Similarity=0.138 Sum_probs=207.5
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHH-HHHHHHHh----
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYS-ILIKSCTK---- 77 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~---- 77 (351)
++...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+. .|+...|. .+..+...
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHhhhccc
Confidence 456789999999999886554 4435677788899999999999999999999984 45555554 44444422
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChH-HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHH
Q 018743 78 -FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE-EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155 (351)
Q Consensus 78 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 155 (351)
..+.+....+++++...- |.......+.-.+.....+. .+..++.....+ |+|+ +|+.+-..|.......-.
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHcChhHHHHH
Confidence 235678888999887653 44333333332233323333 344555666666 4443 567777777766555555
Q ss_pred HHHHHHHHhc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 018743 156 EKWYNEFNLM----G----------VKADI--QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219 (351)
Q Consensus 156 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (351)
.+++...... + -+|+. .++..+...|...|++++|.+.++..+++.+. .+..|..-.+.+-..
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHC
Confidence 6666555322 1 12343 34566788899999999999999999987433 478888889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHh--------HHHHHHHHHhcCC
Q 018743 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF--------FNCIISAYGQAGD 291 (351)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g~ 291 (351)
|++++|.+.++..+... .-|-..-+..+..+.+.|++++|.+++....+.+..|.... ......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999886 45777888889999999999999999999887765433222 2455778999999
Q ss_pred HHHHHHHHHHHHh
Q 018743 292 VEKMGELFLTMKE 304 (351)
Q Consensus 292 ~~~a~~~~~~~~~ 304 (351)
+..|++.|....+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887776653
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.55 E-value=1.4e-11 Score=103.15 Aligned_cols=246 Identities=20% Similarity=0.222 Sum_probs=182.1
Q ss_pred CCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc----CC-CCCCHhH-HHHHHHHHhcCCCHHHHHHHHHHHHhc---
Q 018743 95 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES----GG-CHPDIFT-LNSMISAYGNSGNIEKMEKWYNEFNLM--- 165 (351)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 165 (351)
+.|.-..+...+...|...|+++.|..+++..++. .| ..|...+ .+.+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33444567777999999999999999999988764 11 1344333 344778899999999999999998652
Q ss_pred --C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c--C-CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 166 --G--VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK---R--F-FFPTV-VTYNIVIETFGKAGHIEKMEEYFKKMKH 234 (351)
Q Consensus 166 --~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (351)
| .+.-..+++.|..+|.+.|++++|...+++..+ . + ..|.+ ..++.+...+...+++++|..+++...+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2 112245678888899999999999988877543 1 1 12222 3466677888899999999999987654
Q ss_pred c---CCCc----cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc----CC---ccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743 235 R---GMKP----NSITYCSLVSAYSKAGLIMKVDSILRQVENS----DV---ILDTPFFNCIISAYGQAGDVEKMGELFL 300 (351)
Q Consensus 235 ~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 300 (351)
. -+.+ -..+++.|...|...|++++|..+++.+... +- .-....++.+...|.+.+++.+|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 2 1122 2357899999999999999999999987632 11 1124467888999999999999999999
Q ss_pred HHHhc----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743 301 TMKER----HC-VPD-NITFATMIQAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 301 ~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
+.... |. .|+ ..+|..|..+|...|+++.|.++.+.+...
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 86532 21 133 458899999999999999999999988754
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=1.8e-12 Score=111.22 Aligned_cols=256 Identities=14% Similarity=0.155 Sum_probs=154.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 15 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94 (351)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 94 (351)
.++-.+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.- ...+.+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC---------
Confidence 45667788899999999999999999999999998 8888876 555667788999998888888877665
Q ss_pred CCCCCHhHHHHHHHHHhhcCChHH---HHHHHHHHHhcC---CCC-CCHhH-------------HHHHHHHHhcCCCHHH
Q 018743 95 GIECSAVTYNTIIDGYGKAKKFEE---MESSFSAMVESG---GCH-PDIFT-------------LNSMISAYGNSGNIEK 154 (351)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~---~~~-~~~~~-------------~~~l~~~~~~~~~~~~ 154 (351)
.|.+.||..|..+|...|+... +.+.+..+.... |+. |.... -...+....-.|-|+.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6788999999999999998654 333222222110 100 00000 0111222222333444
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234 (351)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (351)
+++++..+..... ..+. ..+++-+... .....++........-.|++.+|..++..-..+|+.+.|..++.+|.+
T Consensus 158 llkll~~~Pvsa~-~~p~--~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAW-NAPF--QVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHhhCCcccc-cchH--HHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 4444433221110 0001 1112222211 222233333322221146777777777777777777777777777777
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291 (351)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 291 (351)
.|++.+.+-|..|+-+ .++..-++.+++.|...|+.|+..++...+..+...|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7777776666666644 56666667777777777777777777666665555443
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=1.6e-10 Score=84.27 Aligned_cols=198 Identities=13% Similarity=0.061 Sum_probs=108.3
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181 (351)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (351)
+...|.-.|...|+...|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+.|++..+.. +.+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 34445555666666666666666666553 3444556666666666666666666666665543 34455556666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHH
Q 018743 182 GRAGMYDKMRSVMDFMQKRFFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260 (351)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 260 (351)
|..|.+++|...|+........ -...+|..+.-+..+.|+++.|.+.|++..+.. +-...+...+.....+.|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 6666666666666655443211 123445555555555666666666666555543 22334455555555555555555
Q ss_pred HHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
...++.....+. ++..+....|+.-...|+.+.+-+.=..+..
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555554443 4555555555555555555555554444443
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=2.4e-10 Score=83.38 Aligned_cols=199 Identities=14% Similarity=0.066 Sum_probs=119.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743 31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110 (351)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (351)
+...|.-.|.+.|+...|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 34445556666666666666666666532 3334556666666666666666666666666654 44556666666666
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018743 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190 (351)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (351)
|..|++++|.+.|++.........-..+|..+.-+..+.|+.+.|.+.|++..+.. +....+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 66666666666666666554444444456666666666666666666666666543 23344455566666666666666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234 (351)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (351)
...++.....+. ++..+.-..|+.-...|+.+.+-++=..+.+
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666666655544 4555555555655566666655555444444
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.46 E-value=4.9e-10 Score=90.00 Aligned_cols=204 Identities=9% Similarity=-0.021 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018743 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180 (351)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (351)
..|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.. +.+...+..+..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445555666666666666666666666552 4455566666666666666666666666666543 2334555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHH
Q 018743 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260 (351)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 260 (351)
+...|++++|.+.++...+..+. +. ............+++++|...+.+..... .|+...+ .+ .....|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHH
Confidence 66666777777666666654322 21 11111122334556677776665544322 2221111 12 22234444333
Q ss_pred HHHHHHhhh---cCCc---cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018743 261 DSILRQVEN---SDVI---LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFA 315 (351)
Q Consensus 261 ~~~~~~~~~---~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 315 (351)
..+..+.+ ..+. .....|..+...+.+.|++++|+..|++..+.+ +||..-+.
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 23333321 1111 023456677777777777777777777777653 33444443
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.46 E-value=1e-09 Score=88.10 Aligned_cols=220 Identities=11% Similarity=0.020 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHH
Q 018743 43 GLLDEAFSTINDMKSVSDCKPD--VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEME 120 (351)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 120 (351)
+..+.++.-+.++.......|+ ...|..+...+...|+++.|...|++..+.. |.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4445555555555532222222 2334444555555566666666666555554 334555566666666666666666
Q ss_pred HHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (351)
..|++..+.. +.+..+|..+..++...|++++|.+.++...+.. |+..............++.++|...+......
T Consensus 119 ~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 6666655542 3334455555555555666666666666555432 22211111122223345556666665443322
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH---HcCC---CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK---HRGM---KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272 (351)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 272 (351)
. .|+...+ .+.. ...|+...+ ..+..+. +... +.....|..+...+...|++++|...|++..+.++
T Consensus 195 ~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 L-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred C-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1 1111111 1111 122332222 1222222 1100 11234556666666666666666666666665543
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.45 E-value=9.5e-09 Score=85.64 Aligned_cols=311 Identities=10% Similarity=-0.058 Sum_probs=190.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH-
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT- 105 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 105 (351)
....|..+...+...|+.+.+...+....+.....++.. ........+...|++++|..++++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 355666777777777888887777766554332233322 22222334667899999999999988764 445545442
Q ss_pred --HHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018743 106 --IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183 (351)
Q Consensus 106 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (351)
+.......+....+.+.+...... .+........+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPE--NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 222222345555555555542111 23333445566678889999999999999998865 5556778888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CccHHHH-H--HHHHHHHhcCC
Q 018743 184 AGMYDKMRSVMDFMQKRFFF-PTV--VTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-KPNSITY-C--SLVSAYSKAGL 256 (351)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~ 256 (351)
.|++++|...++........ |+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999987765322 232 3455678888999999999999999864322 1222111 1 23333334444
Q ss_pred HhHHHHH---HHHhhhcCC-ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------C-CHHHHHHHHHHHHHc
Q 018743 257 IMKVDSI---LRQVENSDV-ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-------P-DNITFATMIQAYNAL 324 (351)
Q Consensus 257 ~~~a~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------p-~~~~~~~l~~~~~~~ 324 (351)
...+.+. ......... ............++...|+.++|..+++.+...... . ..........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333332 121111101 111122225666788899999999999998753211 0 112222333456789
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 018743 325 GMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 325 g~~~~A~~~~~~~~~~~~ 342 (351)
|++++|.+.+...+....
T Consensus 321 g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 321 GNYATALELLGPVRDDLA 338 (355)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999887653
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=4.6e-13 Score=75.89 Aligned_cols=50 Identities=34% Similarity=0.515 Sum_probs=42.2
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323 (351)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (351)
||..+||.++++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=6.7e-13 Score=75.23 Aligned_cols=49 Identities=39% Similarity=0.584 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 018743 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYG 111 (351)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (351)
||+.+|++++++|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=1.1e-08 Score=87.32 Aligned_cols=337 Identities=12% Similarity=0.104 Sum_probs=198.0
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHH-hcCCHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT-KFHRFD 82 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 82 (351)
+..+|+++.+.+.|++....-.. ..+.|..+...+...|.-..|+.+++.-.....-+++...+-..-..|. +.+..+
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence 34566777777777766544333 5566677777777777766677666665542221223333333333333 334444
Q ss_pred HHHHHHHHHHHc--CC--CCCHhHHHHHHHHHhhc-----------CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743 83 LIEKILAEMSYL--GI--ECSAVTYNTIIDGYGKA-----------KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147 (351)
Q Consensus 83 ~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (351)
+++++-.++... +. ......|..+.-+|... ....++++.+++..+.++..|+...| +.--|+
T Consensus 412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A 489 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYA 489 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHH
Confidence 544444444331 00 11222333333333211 12344555666665554333333222 222344
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC------------------------
Q 018743 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FF------------------------ 202 (351)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~------------------------ 202 (351)
-.++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+..... +.
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHH
Confidence 45566666666666665544455555555555555555555555544432211 00
Q ss_pred -----------------------------------------------------------------------CCC------
Q 018743 203 -----------------------------------------------------------------------FPT------ 205 (351)
Q Consensus 203 -----------------------------------------------------------------------~~~------ 205 (351)
.|+
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~ 649 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLL 649 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHH
Confidence 000
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285 (351)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (351)
...|......+.+.++.++|...+.+..... +.....|......+...|..++|...|......++. ++.+..++..+
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~ 727 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 0122333444555556666665555555442 444555666666777788899999999888887766 77889999999
Q ss_pred HHhcCCHHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 286 YGQAGDVEKMGE--LFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 286 ~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
+.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|+...++.+..|.
T Consensus 728 lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999888887 999999875 347889999999999999999999999999998877654
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=9.1e-10 Score=92.52 Aligned_cols=239 Identities=16% Similarity=0.167 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCHh-HHHHHHHHHhhcCChHHHHHHHHHHHhcC-----CC
Q 018743 65 VYTYSILIKSCTKFHRFDLIEKILAEMSYL-----G-IECSAV-TYNTIIDGYGKAKKFEEMESSFSAMVESG-----GC 132 (351)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~ 132 (351)
..+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++.... ..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888999999999999999988665 2 123333 33447788999999999999999886531 12
Q ss_pred CCC-HhHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 018743 133 HPD-IFTLNSMISAYGNSGNIEKMEKWYNEFNLM-----GV-KADI-QTLNILTKSYGRAGMYDKMRSVMDFMQKR---F 201 (351)
Q Consensus 133 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 201 (351)
.|. ..+++.|..+|.+.|++++|..++++..+- +. .|.. ..++.+...+...+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 346788888999999999998888776431 21 1222 24567778888999999999998875432 1
Q ss_pred CCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C---CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh-
Q 018743 202 FFP----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG----M---KPNSITYCSLVSAYSKAGLIMKVDSILRQVEN- 269 (351)
Q Consensus 202 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 269 (351)
+.+ -..+++.+...|...|++++|.+++++++... . .-....++.+...|.+.+.+++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 24678999999999999999999999986431 1 12245678899999999999999999987542
Q ss_pred ---cCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 270 ---SDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 270 ---~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 303 (351)
.|+. -...+|..|...|...|++++|+++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2222 134578899999999999999999998876
No 75
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=8.2e-11 Score=101.35 Aligned_cols=256 Identities=14% Similarity=0.154 Sum_probs=180.6
Q ss_pred HHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 018743 51 TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130 (351)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 130 (351)
++-.+.. .|+.|+..||..++.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 4444555 789999999999999999999999998 9999988888889999999999998888876654
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHH---HHHHHHHH----HhcCCCCCHHHH--------------HHHHHHHHhcCCHHH
Q 018743 131 GCHPDIFTLNSMISAYGNSGNIEK---MEKWYNEF----NLMGVKADIQTL--------------NILTKSYGRAGMYDK 189 (351)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~----~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~ 189 (351)
.|.+.+|+.+..+|...||..- +.+.+..+ ...|+-.....+ ...+....-.|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5677899999999999999754 33322222 122221111111 112223334455555
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 268 (351)
+.+++..+...... .+.. .+++-+..... +++-..+-+...+ .|++.+|..++..-...|+.+.|..++.+|.
T Consensus 158 llkll~~~Pvsa~~-~p~~--vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWN-APFQ--VFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCccccc-chHH--HHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 55555444322111 1111 12433333322 3333333222222 5899999999999999999999999999999
Q ss_pred hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 018743 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329 (351)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 329 (351)
+.|+..+...|..|+-+ .++...+..+++.|.+.|+.|+..|+.-.+..+...|....
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~ 289 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY 289 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence 99999888888888766 88899999999999999999999999988888877665433
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=7.3e-09 Score=86.69 Aligned_cols=323 Identities=13% Similarity=0.132 Sum_probs=197.9
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
+...|+.++|........+.++. +...|+.+.-.+....++++|+..|....... +.|...|.-+.-.-++.++++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhh
Confidence 34568888888888888877666 78888888888888888999999998888642 4556667666666667788877
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH------HHHhcCCCHHHHHH
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI------SAYGNSGNIEKMEK 157 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~a~~ 157 (351)
.......+.+.. +.....|..++.++.-.|+...|..+++...+.....|+...+.... ......|..+.|.+
T Consensus 128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 777777776653 44566777788888888888888888888876643346655544332 33455677777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH-HHHhcCCHHHHH-HHH------
Q 018743 158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-TFGKAGHIEKME-EYF------ 229 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~------ 229 (351)
.+..-... +......-..-...+.+.+++++|..++..+... .||...|...+. ++.+-.+.-++. .+|
T Consensus 207 ~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 207 HLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 66554321 1111222234456677788888888888888776 345544444333 222121111211 233
Q ss_pred ----------------------------HHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHh--------hhcC--
Q 018743 230 ----------------------------KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV--------ENSD-- 271 (351)
Q Consensus 230 ----------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~-- 271 (351)
..+.+.|+++- +..+...|-. ..+.- +++++ ...+
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTGMF 356 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhc---hhHhH-HHHHHHHHHHhhcccccCC
Confidence 33333343321 1222222211 11111 22221 1110
Q ss_pred --------CccCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743 272 --------VILDTPF--FNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 272 --------~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
-.|.+.. +-.++..+-+.|+++.|...++..+++ .|+ +..|..-.+.+...|+.++|..++++..+.
T Consensus 357 ~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 357 NFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred CcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 0233333 345667788888888888888888875 444 345556667788888888888888887766
Q ss_pred cc
Q 018743 341 KE 342 (351)
Q Consensus 341 ~~ 342 (351)
+.
T Consensus 435 D~ 436 (700)
T KOG1156|consen 435 DT 436 (700)
T ss_pred cc
Confidence 54
No 77
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.38 E-value=7.4e-11 Score=93.32 Aligned_cols=253 Identities=10% Similarity=0.070 Sum_probs=147.1
Q ss_pred HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743 36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115 (351)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (351)
++-+.-.|++..++.-.+ ... ..-..+......+.+++...|+.+.++ .++.... +|.......+...+...++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKS-FSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHT-STCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHhhhHHHHHHHhh-ccC-CCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccc
Confidence 344556788888876665 322 111223444556667777788766443 3333333 5666666666555554455
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018743 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195 (351)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (351)
-+.++.-+++.........+..........+...|++++|+++++.. .+.......+..+.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55665555554333211122223333335566678888887776542 355666677777888888888888888
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743 196 FMQKRFFFPTVVTYNIVIETFGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271 (351)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 271 (351)
.|.+. ..| .+...+..++.. .+.+.+|..+|+++.+. .++++.+.+.+..++...|++++|..++.+....+
T Consensus 156 ~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 87764 223 333334444433 23577888888886654 46677777777777778888888888887777665
Q ss_pred CccCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 018743 272 VILDTPFFNCIISAYGQAGDV-EKMGELFLTMKER 305 (351)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 305 (351)
+. ++.++..++.+....|+. +.+.+.+..+...
T Consensus 232 ~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 55 566666677777777776 5566677776654
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=2.7e-08 Score=82.60 Aligned_cols=118 Identities=14% Similarity=0.027 Sum_probs=68.8
Q ss_pred cccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCH
Q 018743 2 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF 81 (351)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (351)
+.+.+.|++++|.+....++..++. +..++..-+.++.+.+++++|+.+.+.-.. ...+...+..-.-+..+.+..
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHHHcccH
Confidence 4567889999999999999988754 777888888889999999999866554321 011111111111222345555
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 018743 82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127 (351)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 127 (351)
++|+..++-.. +.+..+...-...+.+.|++++|+.+|+.+.
T Consensus 96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~ 137 (652)
T KOG2376|consen 96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLA 137 (652)
T ss_pred HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555111 1122233334444555556666665555553
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.1e-08 Score=81.23 Aligned_cols=269 Identities=10% Similarity=0.025 Sum_probs=204.0
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH
Q 018743 25 LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 103 (351)
Q Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 103 (351)
.+-|+.....+..++...|+.++|+..|++.... .|+.. ......-.+.+.|+.+....+...+.... ..+...|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 4558889999999999999999999999998763 44432 22222233557788888888877776543 3355556
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018743 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR 183 (351)
Q Consensus 104 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (351)
..-+.......++..|+.+-++.++.. +.+...+-.-...+...|++++|.-.|+...... +.+...|.-|+.+|..
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHh
Confidence 656666777899999999999998764 5556666666688889999999999999887643 5678899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHhHH
Q 018743 184 AGMYDKMRSVMDFMQKRFFFPTVVTYNIVI-ETFG-KAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIMKV 260 (351)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 260 (351)
.|.+.+|..+-+..... .+.+..+...+. ..+. ...--++|.++++.-... .|+ ......+...+...|..+.+
T Consensus 381 ~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred hchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchH
Confidence 99999998877665443 222455554442 2222 223457888888887765 454 45677888889999999999
Q ss_pred HHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 261 DSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
..+++..... .||....+.|.+.+...+.+.+|.+.|......
T Consensus 458 i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 458 IKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999987765 568889999999999999999999999998875
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.7e-08 Score=82.76 Aligned_cols=332 Identities=13% Similarity=0.073 Sum_probs=229.6
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCH
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRF 81 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 81 (351)
+.+..|+++.|+..|-+.....+. |...|..-..+|...|++++|++=-.+-.+. .|+ ...|+....++.-.|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccH
Confidence 456789999999999999988766 8888988999999999999998776666553 555 45799999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC----------------------------------------------
Q 018743 82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK---------------------------------------------- 115 (351)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------------------- 115 (351)
++|+.-|.+-.+.. +.|...++.+..++.....
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988775 5566667766666521100
Q ss_pred --hHHHHHHHHHHHhcC--------------CCCC------------C----------HhHHHHHHHHHhcCCCHHHHHH
Q 018743 116 --FEEMESSFSAMVESG--------------GCHP------------D----------IFTLNSMISAYGNSGNIEKMEK 157 (351)
Q Consensus 116 --~~~a~~~~~~~~~~~--------------~~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~ 157 (351)
.....+..-.+.... +..| | ..-...+.++..+..+++.+++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 000000000000000 0011 0 0113445566666777888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH-------HHHHHhcCCHHHHHHHHH
Q 018743 158 WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV-------IETFGKAGHIEKMEEYFK 230 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~ 230 (351)
.+....... -+..-++....+|...|.+..+...-....+.|.. ...-|+.+ ..++.+.++++.++..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 888777654 45556677777888888887777766665554432 22333333 335556677888888888
Q ss_pred HHHHcCCCccHHHH-------------------------HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743 231 KMKHRGMKPNSITY-------------------------CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285 (351)
Q Consensus 231 ~~~~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (351)
+.......|+..+= ..-...+.+.|++..|...|.++++..+. |...|....-+
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAAC 401 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHH
Confidence 76654434333221 11234566789999999999999988866 88899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
|.+.|.+..|++-.+..++.. ++....|..-..++....+++.|.+.|++.++.+|..
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 999999999999888888762 3345566666777888889999999999998888654
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.35 E-value=1.8e-08 Score=84.00 Aligned_cols=295 Identities=10% Similarity=0.036 Sum_probs=180.9
Q ss_pred cCCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHH---HHHHHHhcCC
Q 018743 6 KCKQPEQASLLFEVMLSDGL-KPS-VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI---LIKSCTKFHR 80 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~ 80 (351)
..|+.+.+...+....+... .++ ..........+...|++++|.+.+++..+.. +.+...+.. ........+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~ 95 (355)
T cd05804 18 LGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGM 95 (355)
T ss_pred hcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccC
Confidence 44667776666666555432 222 2233334556778899999999999988742 334444442 1111223455
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 018743 81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160 (351)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (351)
...+.+.++... ...+........+...+...|++++|...+++..+.. +.+...+..+..++...|++++|..+++
T Consensus 96 ~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 96 RDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred chhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555665555421 1222334455566778899999999999999998874 5667788889999999999999999999
Q ss_pred HHHhcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHhH-H--HHHHHHHhcCCHHHHHHH--HHH
Q 018743 161 EFNLMGV-KADI--QTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-FPTVVTY-N--IVIETFGKAGHIEKMEEY--FKK 231 (351)
Q Consensus 161 ~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~~~ 231 (351)
+...... .++. ..+..+...+...|++++|..+++....... .+..... + .++.-+...|..+.+.++ +..
T Consensus 173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~ 252 (355)
T cd05804 173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLAD 252 (355)
T ss_pred hhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9876432 1232 3455788889999999999999999864432 1122211 1 223333334433333222 111
Q ss_pred HHHcCCC--ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc------c--CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 232 MKHRGMK--PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI------L--DTPFFNCIISAYGQAGDVEKMGELFLT 301 (351)
Q Consensus 232 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 301 (351)
......+ ...........++...|+.+.|...++.+...... . .....-...-++...|+.++|.+.+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~ 332 (355)
T cd05804 253 YAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGP 332 (355)
T ss_pred HHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111 11122235666778889999999999987653221 0 111222223356688999999999998
Q ss_pred HHhc
Q 018743 302 MKER 305 (351)
Q Consensus 302 ~~~~ 305 (351)
....
T Consensus 333 al~~ 336 (355)
T cd05804 333 VRDD 336 (355)
T ss_pred HHHH
Confidence 7753
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=3.8e-08 Score=82.58 Aligned_cols=168 Identities=10% Similarity=0.030 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCc
Q 018743 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT---VVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-----------MKP 239 (351)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~ 239 (351)
|..+...|-..|+.+.|..+|++..+...+.- ..+|..-...-.++.+++.|++++++....- .++
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 45566677777888888888877766533211 2344444555556677777777777654321 111
Q ss_pred ------cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-H
Q 018743 240 ------NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN-I 312 (351)
Q Consensus 240 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~ 312 (351)
+...|...+...-..|-++....+++++.+..+. ++.+.......+-.+.-++++.++|++-+..-..|+. .
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 1233455555555667777778888887776655 4444334444444555566777776665544333443 3
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHhcc
Q 018743 313 TFATMIQAYNA---LGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 313 ~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 342 (351)
.|+..+.-+.+ .-+.+.|+.+|+++++.-|
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 55655554443 2257777777777777443
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.33 E-value=5.2e-10 Score=88.58 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=61.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCC
Q 018743 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AGL 256 (351)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 256 (351)
+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 33444555544444321 133333444444555555555555555544321 11 222223322221 123
Q ss_pred HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 018743 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT-EAAQNLEN 335 (351)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 335 (351)
+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+ +-++.++..++.+....|+. +.+.++++
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44455555554332 22344444445555555555555555555444332 12334444444444444444 33444444
Q ss_pred HHHHhcc
Q 018743 336 KMIAMKE 342 (351)
Q Consensus 336 ~~~~~~~ 342 (351)
++....|
T Consensus 261 qL~~~~p 267 (290)
T PF04733_consen 261 QLKQSNP 267 (290)
T ss_dssp HCHHHTT
T ss_pred HHHHhCC
Confidence 4444433
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.31 E-value=7.3e-08 Score=74.93 Aligned_cols=307 Identities=12% Similarity=0.038 Sum_probs=221.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH-H
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV-YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYN-T 105 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 105 (351)
++.-.--+...+...|++.+|+.-|....+. .|+. .++-.-...|...|+...|+.-+.+..+. .||-..-. .
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~---dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG---DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 4445556777888899999999999988862 3332 23333345688889988888888888775 56643222 2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcCCCCC-CHhH------------HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHH
Q 018743 106 IIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFT------------LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172 (351)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (351)
-...+.+.|.+++|..-|+.+++...... .... ....+..+...||...|+.....+++.. +.+..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 34567789999999999999987641100 1111 2223445677899999999999998764 67888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH----HH---
Q 018743 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT----YC--- 245 (351)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~--- 245 (351)
.+..-..+|...|++..|+.-++...+.... ++.++-.+-..+...|+.+.++...++.++. .||... |-
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence 8889999999999999999988887665433 5666667778888999999999999888875 444322 21
Q ss_pred HHH------HHHHhcCCHhHHHHHHHHhhhcCCccCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHH
Q 018743 246 SLV------SAYSKAGLIMKVDSILRQVENSDVILDT---PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFA 315 (351)
Q Consensus 246 ~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~ 315 (351)
.+. ......+++.++..-.+...+..+.... ..+..+-.++...|++.+|++...+..+. .|| ..++-
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~ 345 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHH
Confidence 111 2234557788888888877776554222 23455667788889999999999999874 444 77888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743 316 TMIQAYNALGMTEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 345 (351)
--..+|.-...+|.|+.-|+++.+.++.+.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 888899999999999999999998887654
No 85
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=1.4e-07 Score=79.26 Aligned_cols=222 Identities=9% Similarity=0.119 Sum_probs=151.8
Q ss_pred CChHHHHHHHHHHHhcCCCCCC------HhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhc
Q 018743 114 KKFEEMESSFSAMVESGGCHPD------IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---IQTLNILTKSYGRA 184 (351)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 184 (351)
|+..+-...+.++++. +.|. ...|..+...|-..|+++.|..+|++......+.- ..+|.....+-.+.
T Consensus 361 ~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred CChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 4555666666666554 2332 12478888999999999999999999877543322 35677777777888
Q ss_pred CCHHHHHHHHHHHHHcCCC-----------------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743 185 GMYDKMRSVMDFMQKRFFF-----------------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247 (351)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (351)
.+++.|.++++......-. .+...|+..+...-..|-++....+|+++.+..+. ++......
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 8999999988876432111 13455667777777788999999999999987644 44444444
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCccCH-HhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHH
Q 018743 248 VSAYSKAGLIMKVDSILRQVENSDVILDT-PFFNCIISAYGQ---AGDVEKMGELFLTMKERHCVPDNI--TFATMIQAY 321 (351)
Q Consensus 248 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~ 321 (351)
...+-...-++++.+++++-...-..|+. ..|+..+.-+.+ ....+.|..+|+++.+ |++|... .|......=
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 55556677788999999887766545554 467777665554 2358999999999998 6776543 222222333
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 018743 322 NALGMTEAAQNLENKMIA 339 (351)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~ 339 (351)
.+.|....|+++++++..
T Consensus 597 Ee~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATS 614 (835)
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 356888888888887644
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=1.1e-07 Score=89.24 Aligned_cols=339 Identities=8% Similarity=-0.027 Sum_probs=212.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCC-----CccH--HHHHHHHHHHHhc
Q 018743 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC-----KPDV--YTYSILIKSCTKF 78 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~--~~~~~l~~~~~~~ 78 (351)
..|+++.+..+++.+.......++.........+...|++++|...+......... .+.. .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 34566666666655422211112333344555666789999999888876542110 1111 1222233445678
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhhcCChHHHHHHHHHHHhcCC----CCCCHhHHHHHHHHHhcCC
Q 018743 79 HRFDLIEKILAEMSYLGIECSA----VTYNTIIDGYGKAKKFEEMESSFSAMVESGG----CHPDIFTLNSMISAYGNSG 150 (351)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~ 150 (351)
|+++.|...+++....-...+. ...+.+...+...|++++|...+++...... ......++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999987763211121 2345566677889999999999988764321 1111234555667788899
Q ss_pred CHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHhHHHHHHHHHhc
Q 018743 151 NIEKMEKWYNEFNLM----GVK--A-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKR----FFFPTVVTYNIVIETFGKA 219 (351)
Q Consensus 151 ~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 219 (351)
++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+.......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 999999998876542 211 1 2233455666777889999999998876542 1111234445566777889
Q ss_pred CCHHHHHHHHHHHHHcC--CCccHH--HH--HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH---HhHHHHHHHHHhcC
Q 018743 220 GHIEKMEEYFKKMKHRG--MKPNSI--TY--CSLVSAYSKAGLIMKVDSILRQVENSDVILDT---PFFNCIISAYGQAG 290 (351)
Q Consensus 220 ~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 290 (351)
|+++.|...+....... ...... .. ...+..+...|+.+.|...+............ ..+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 99999999988875421 111111 10 11223445678999999998776543221111 11345677888999
Q ss_pred CHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 291 DVEKMGELFLTMKER----HCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 291 ~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++++.....
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 999999999987643 32222 3456677788999999999999999998876543
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=1.2e-07 Score=74.17 Aligned_cols=124 Identities=6% Similarity=0.072 Sum_probs=83.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 018743 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297 (351)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 297 (351)
-..++++++..+..+...- ..|....-.+.++.+..|.+.+|+++|-.+....++-+......|.++|.+.+..+.|++
T Consensus 371 L~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH
Confidence 3344555555555555442 223333345778888889999999999888877766333334556789999999999977
Q ss_pred HHHHHHhcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743 298 LFLTMKERHCVPDNITFA-TMIQAYNALGMTEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 298 ~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 345 (351)
++-++.. +.+..+.. .+.+-|.+.+.+=-|.+.|+.+...+|.|.
T Consensus 450 ~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 450 MMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 7655432 33333433 344568888888888888888888887764
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=6.8e-09 Score=85.80 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHH
Q 018743 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-SITYCSL 247 (351)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 247 (351)
+|..+...|.-.|--.|++++|...|+......+. |..+||.|...++...+.++|+..|.+.++. .|+ +.....|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhh
Confidence 44445555555555555555555555555544322 4555555555555555555555555555554 332 2333344
Q ss_pred HHHHHhcCCHhHHHHHHHH
Q 018743 248 VSAYSKAGLIMKVDSILRQ 266 (351)
Q Consensus 248 ~~~~~~~g~~~~a~~~~~~ 266 (351)
.-+|...|.+.+|.+.|-.
T Consensus 505 gIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hhhhhhhhhHHHHHHHHHH
Confidence 4455555555555555544
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=3.2e-09 Score=87.69 Aligned_cols=225 Identities=13% Similarity=0.107 Sum_probs=177.7
Q ss_pred HHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018743 108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187 (351)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (351)
.-+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34668899999999999998874 6678899999999999999999999999998865 55677888888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HcCCCccHHHHHHHHHHHHhcC
Q 018743 188 DKMRSVMDFMQKRFFFPTVVTYNIVI-----------ETFGKAGHIEKMEEYFKKMK-HRGMKPNSITYCSLVSAYSKAG 255 (351)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g 255 (351)
..|...++......++ |..+. ..+.....+....++|-++. ..+..+|+.....|.-.|.-.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9999999987664321 00000 11112222344445555544 4444478888888888889999
Q ss_pred CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 018743 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLE 334 (351)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 334 (351)
++++|.+.|+.+....+. |..+||.|...++...+.++|+..|.++.+. .|+ +.....|.-.|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999988877 8999999999999999999999999999984 666 456777888999999999999999
Q ss_pred HHHHHhccc
Q 018743 335 NKMIAMKEN 343 (351)
Q Consensus 335 ~~~~~~~~~ 343 (351)
=.++.+...
T Consensus 522 L~AL~mq~k 530 (579)
T KOG1125|consen 522 LEALSMQRK 530 (579)
T ss_pred HHHHHhhhc
Confidence 888877665
No 90
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.23 E-value=1.3e-08 Score=86.44 Aligned_cols=226 Identities=9% Similarity=0.026 Sum_probs=186.9
Q ss_pred CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018743 96 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175 (351)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (351)
.+|-...-..+...+...|-..+|..+|++.. .|...+.+|...|+..+|..+..+..+ -+|+...|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH
Confidence 45555555677888899999999999999872 477788999999999999999988877 378999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 018743 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255 (351)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 255 (351)
.+.+......-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 9999988888899999998875443 11122223344789999999999877764 567788999999999999
Q ss_pred CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 018743 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335 (351)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (351)
+++.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.++
T Consensus 534 k~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 999999999999888766 78899999999999999999999999999876 4467788888888999999999999999
Q ss_pred HHHHhccc
Q 018743 336 KMIAMKEN 343 (351)
Q Consensus 336 ~~~~~~~~ 343 (351)
++......
T Consensus 612 rll~~~~~ 619 (777)
T KOG1128|consen 612 RLLDLRKK 619 (777)
T ss_pred HHHHhhhh
Confidence 99776543
No 91
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.21 E-value=5.3e-08 Score=88.46 Aligned_cols=241 Identities=8% Similarity=0.059 Sum_probs=174.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD---VYTYSILIKSCTKFHRFDLIEKILAEMS 92 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 92 (351)
=|+++....+. +...|-..|..+.+.++.+.|.++.++....-++.-. ...|.++++.-...|.-+...++|+++.
T Consensus 1446 DferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 34455544333 6777888888888889999999998888763222111 2457777777777778888888888888
Q ss_pred HcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC--C
Q 018743 93 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA--D 170 (351)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~ 170 (351)
+.. ..-..|..|...|.+.+.+++|.++++.|.++- ......|...+..+.+.++-+.|..++.+..+.- +. .
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eH 1599 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEH 1599 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhh
Confidence 763 234567788888888999999999999998874 3566778888888888888888888888876642 22 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH--HHHHHHH
Q 018743 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS--ITYCSLV 248 (351)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 248 (351)
.....-.+..-.+.|+.+.+..+|+......++ -...|+..++.-.++|+.+.+..+|++....+++|-. ..|...+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 445566667777888888888888887776443 5677888888888888888888888888888776643 3455555
Q ss_pred HHHHhcCCHhHHHHH
Q 018743 249 SAYSKAGLIMKVDSI 263 (351)
Q Consensus 249 ~~~~~~g~~~~a~~~ 263 (351)
..-...|+-..++.+
T Consensus 1679 eyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHhcCchhhHHHH
Confidence 544455555444443
No 92
>PLN02789 farnesyltranstransferase
Probab=99.20 E-value=1.6e-07 Score=75.66 Aligned_cols=213 Identities=8% Similarity=-0.029 Sum_probs=113.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH
Q 018743 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146 (351)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (351)
+..+-..+...++.++|+.+.+++++.. |-+..+|+....++...| ++++++..++++.+.. +.+..+|+.....+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHH
Confidence 4444444555667777777777776654 334555555555555555 4677777777776653 44445565554444
Q ss_pred hcCCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CC
Q 018743 147 GNSGNI--EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA---GH 221 (351)
Q Consensus 147 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 221 (351)
.+.|+. ++++.+++.+.+.. +-+..+|+....++...|+++++++.++++.+.++. +...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 445542 45566666666544 445566666666666666666666666666665444 445555544444332 11
Q ss_pred H----HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHH
Q 018743 222 I----EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA----GLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287 (351)
Q Consensus 222 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 287 (351)
. ++.+....+++... +-|...|+.+...+... +...+|...+.+..+.++. +...+..|+..|+
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 1 34444444444442 33445555555555442 2233455555554443332 4444445555444
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.19 E-value=8.3e-08 Score=87.27 Aligned_cols=244 Identities=11% Similarity=0.100 Sum_probs=190.5
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC---HhHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743 88 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMISAYGNSGNIEKMEKWYNEFNL 164 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (351)
|+++.... |-+...|...|......++.++|.+++++++..-++.-. ...|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 33344332 446678899999999999999999999999775322211 23688888887788888999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---H
Q 018743 165 MGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN---S 241 (351)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 241 (351)
.. ..-..|..|...|.+.+.+++|.++++.|.+..- -....|...+..+.+.++-+.|..++.+..+. -|. .
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv 1600 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHV 1600 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhH
Confidence 43 3345788999999999999999999999988744 47788999999999999999999999998875 333 3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHH
Q 018743 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN--ITFATMIQ 319 (351)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~ 319 (351)
......+..-.+.|+.+++..+|+......++ -...|+.+++.-.++|+.+.+..+|++.+..++.|-. ..|...+.
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 44556666677899999999999999987766 6789999999999999999999999999998877653 35556665
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 018743 320 AYNALGMTEAAQNLENKMI 338 (351)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~ 338 (351)
.=...|+-+.+..+=.++.
T Consensus 1680 yEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHhcCchhhHHHHHHHHH
Confidence 5555677555444444433
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=5.1e-08 Score=74.32 Aligned_cols=283 Identities=10% Similarity=-0.010 Sum_probs=147.3
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHH-HHHHHHhcCCHHH
Q 018743 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSI-LIKSCTKFHRFDL 83 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ 83 (351)
.+..+++.|++++..-.++.++ +...+..+..+|....++..|-+.++++... .|...-|.. -.+.+.+.+.+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhcccHH
Confidence 4566788888888887777544 7788888889999999999999999998763 455544432 2344566777777
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHH--HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743 84 IEKILAEMSYLGIECSAVTYNTI--IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (351)
|+++...|... ++...-..- .......+++..+..++++.... .+..+.+.......+.|+++.|.+-|+.
T Consensus 97 ALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 97 ALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----CccchhccchheeeccccHHHHHHHHHH
Confidence 77777766532 111111111 11122345555555555544211 2333333333444555666666666655
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CH---------------HhHHHHH
Q 018743 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP-------------TV---------------VTYNIVI 213 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~l~ 213 (351)
..+-+--.....|+.-+ +..+.++++.|.+...++.++|++. |+ ..+|.-.
T Consensus 170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 55433222233344332 2334455666666665555544321 11 1122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH
Q 018743 214 ETFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292 (351)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 292 (351)
..+.+.++++.|.+.+.+|... ....|+.|...+.-.- ..+++.....-++-+...++. ...+|..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHH
Confidence 2234456666666665555422 1233445544433221 123344444444444444443 344555555566666666
Q ss_pred HHHHHHHHH
Q 018743 293 EKMGELFLT 301 (351)
Q Consensus 293 ~~a~~~~~~ 301 (351)
+.|-+++.+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 666555543
No 95
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.7e-07 Score=73.36 Aligned_cols=319 Identities=12% Similarity=0.067 Sum_probs=166.4
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 84 (351)
....++..|+.+++.-...+-.-...+-.-+..++.+.|++++|+..+..+... ..|+...+..|.-+..-.|.+.+|
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHH
Confidence 445677777777776554332212222233455677788888888888877652 245555555555555555555555
Q ss_pred HHHHHHHHHc--------------C-----------CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHH
Q 018743 85 EKILAEMSYL--------------G-----------IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTL 139 (351)
Q Consensus 85 ~~~~~~~~~~--------------~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (351)
..+-....+. + +..+..--.+|.......-.+.+|++++.++... .|+-...
T Consensus 111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~al 187 (557)
T KOG3785|consen 111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIAL 187 (557)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Chhhhhh
Confidence 5544332111 1 0011111223344444455678888888888765 3454455
Q ss_pred HHHH-HHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CCH-----------------------------
Q 018743 140 NSMI-SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA--GMY----------------------------- 187 (351)
Q Consensus 140 ~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~----------------------------- 187 (351)
|..+ -+|.+..-++-+.+++.-..+. ++.++...+..+....+. |+.
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 5433 4556677677777777666543 233344444333322222 111
Q ss_pred ----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH---------------
Q 018743 188 ----DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV--------------- 248 (351)
Q Consensus 188 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--------------- 248 (351)
+.|++++-.+.+. - +..--.++-.|.+.++..+|..+.+++... .|-......++
T Consensus 267 FrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred EeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 1122222111111 1 112223444567778888887776664321 22222221111
Q ss_pred --------------------------HHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 249 --------------------------SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302 (351)
Q Consensus 249 --------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 302 (351)
..+.-..++++.+..+..+...-.. |-..--.+.++.+..|++.+|.++|-+.
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 1111222333333333333332222 2222234677888899999999999888
Q ss_pred HhcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHH
Q 018743 303 KERHCVPDNITF-ATMIQAYNALGMTEAAQNLENKM 337 (351)
Q Consensus 303 ~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~ 337 (351)
....++ |..+| ..|.++|.+.++++.|..++-++
T Consensus 420 s~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 420 SGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred cChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 765555 44455 46668899999999988776543
No 96
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=2.3e-07 Score=74.67 Aligned_cols=216 Identities=6% Similarity=-0.066 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743 30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTYNTIID 108 (351)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (351)
.++..+-..+...++.++|+.++.++.+.. +-+..+|+....++...+ ++++++..++++.+.. +.+..+|+....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~ 114 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH
Confidence 355555566677788889999999888742 334445666666666666 5788888888888776 456667776655
Q ss_pred HHhhcCCh--HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--
Q 018743 109 GYGKAKKF--EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-- 184 (351)
Q Consensus 109 ~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 184 (351)
.+.+.|+. ++++.+++++.+.. +.+..+|+...-++...|+++++++.++++++.+ +.+...|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccc
Confidence 56666653 67788888887764 6677888888888888888999999999988876 44556666665555544
Q ss_pred -CCH----HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 018743 185 -GMY----DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA----GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253 (351)
Q Consensus 185 -~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (351)
|.. +........+....+. +...|+.+...+... ++..+|.+.+.+....+ +.+......|+..|+.
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 222 3555666566655443 667777777777663 34456777777766643 4456667777777764
No 97
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.15 E-value=1.9e-06 Score=71.35 Aligned_cols=134 Identities=12% Similarity=0.097 Sum_probs=102.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285 (351)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (351)
.+|...+....+..-+..|..+|.++.+.+..+ +....++++..++ .++..-|.++|+.-.+.-.. ++......+..
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 346666777777778888999999998887666 6677778887665 47888899999876554322 44555677888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743 286 YGQAGDVEKMGELFLTMKERHCVPD--NITFATMIQAYNALGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 342 (351)
+...++-..|..+|++....++.|+ ...|..++.-=..-|+...+.++-+++...-+
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 8888999999999999988766655 45888998888888999999888888766554
No 98
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=2.3e-06 Score=72.29 Aligned_cols=320 Identities=12% Similarity=0.075 Sum_probs=209.7
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 018743 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 85 (351)
.-+++++|+..|......+.. |...|.-+.-.-++.|+++...+...+..+.. +.....|..+..+..-.|+...|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999998766 88899888888888999998888888887632 334556888888888899999999
Q ss_pred HHHHHHHHcC-CCCCHhHHHHHH------HHHhhcCChHHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHhcCCCHHHHHH
Q 018743 86 KILAEMSYLG-IECSAVTYNTII------DGYGKAKKFEEMESSFSAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEK 157 (351)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~ 157 (351)
.++++..+.. -.|+...+.... ....+.|..++|.+.+...... ..|.. .-..-...+.+.+++++|..
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 9999987765 245655554332 2345677888888877765332 22322 23345567788899999999
Q ss_pred HHHHHHhcCCCCCHHHH-HHHHHHHHhcCCHHHHH-HHHHHHHHc----------------------------------C
Q 018743 158 WYNEFNLMGVKADIQTL-NILTKSYGRAGMYDKMR-SVMDFMQKR----------------------------------F 201 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~-~~~~~~~~~----------------------------------~ 201 (351)
++..++... ||..-| ..+..++.+..+.-++. .+|....+. |
T Consensus 241 ~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 241 VYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 999988754 554444 34444443222222222 444443332 2
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH---c---C------------CCccHHHH--HHHHHHHHhcCCHhHHH
Q 018743 202 FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH---R---G------------MKPNSITY--CSLVSAYSKAGLIMKVD 261 (351)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~---~------------~~~~~~~~--~~l~~~~~~~g~~~~a~ 261 (351)
++ .++..+...|- ++..+- +++++.. . | -+|+...| -.++..+-..|+++.|.
T Consensus 319 ~p---~vf~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 319 VP---SVFKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred CC---chhhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 21 11222222221 111111 3333221 1 1 14555444 45778888999999999
Q ss_pred HHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743 262 SILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 341 (351)
..++...++.+. -+..|..=.+.+...|++++|..++++..+.+ .||...-.--+.-..+.++.++|.++.....+.+
T Consensus 392 ~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 392 EYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 999999887443 34455556688999999999999999998764 2354433355566678899999998888776655
Q ss_pred c
Q 018743 342 E 342 (351)
Q Consensus 342 ~ 342 (351)
.
T Consensus 470 ~ 470 (700)
T KOG1156|consen 470 F 470 (700)
T ss_pred c
Confidence 3
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=2.5e-07 Score=79.33 Aligned_cols=287 Identities=13% Similarity=0.026 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018743 10 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILA 89 (351)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 89 (351)
..++++.+++..+.++. |+.+...+.--|+..++++.|++...+..+. +-..+...|..+.-.+...+++..|+.+.+
T Consensus 460 h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALAL-NRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 45788889998888766 5566556666788889999999999998884 235678889999999999999999999988
Q ss_pred HHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC--------------------CC-------CCCHhHHHHH
Q 018743 90 EMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG--------------------GC-------HPDIFTLNSM 142 (351)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~-------~~~~~~~~~l 142 (351)
.....- +.|......=+..-..-++.++++.....+...- |. .....++..+
T Consensus 538 ~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 538 AALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 776541 1121111111222222445454444433332110 00 0011122222
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 018743 143 ISAYGNSGNIEKMEKWYNEFNLMGVK--AD------IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214 (351)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 214 (351)
.......+........ +....+. |+ ...+......+.+.+..++|...+.+..... +.....|.....
T Consensus 617 s~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGL 692 (799)
T ss_pred HHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhH
Confidence 2111100000000000 1111111 12 1234456677788889999988887776653 336677777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHH--HHHHhhhcCCccCHHhHHHHHHHHHhcCCH
Q 018743 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS--ILRQVENSDVILDTPFFNCIISAYGQAGDV 292 (351)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 292 (351)
.+...|..++|...|......+ |-++....++...+.+.|+..-|.. ++..+.+.++. +...|..+...+.+.|+.
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccch
Confidence 8889999999999999988764 4467788999999999999888888 99999999887 899999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 018743 293 EKMGELFLTMKER 305 (351)
Q Consensus 293 ~~a~~~~~~~~~~ 305 (351)
++|.+.|....+.
T Consensus 771 ~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 771 KQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 100
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1e-06 Score=73.49 Aligned_cols=157 Identities=11% Similarity=0.034 Sum_probs=89.2
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (351)
++.+.+++++|+.+.+.=... ..+..-+-.-..+..+.+..++|+..++... +.+..+...-.+.+.+.++++
T Consensus 55 alIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~yd 127 (652)
T KOG2376|consen 55 ALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYD 127 (652)
T ss_pred hhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHH
Confidence 455667777777444321110 1011111122445557788888888777333 223345555566677888888
Q ss_pred HHHHHHHHHHHcCCCC---------------------------CHhHHH---HHHHHHhhcCChHHHHHHHHHHHhcC--
Q 018743 83 LIEKILAEMSYLGIEC---------------------------SAVTYN---TIIDGYGKAKKFEEMESSFSAMVESG-- 130 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~~---------------------------~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~-- 130 (351)
+|.++|+.+.+.+.+. ...+|. .....+...|++.+|+++++...+..
T Consensus 128 ealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e 207 (652)
T KOG2376|consen 128 EALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE 207 (652)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 8888888775543210 111232 23445667899999999998872211
Q ss_pred ------CC----CCCHh-HHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 018743 131 ------GC----HPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNLMG 166 (351)
Q Consensus 131 ------~~----~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 166 (351)
.. ..... .-.-+..++-..|+..+|..++...++..
T Consensus 208 ~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 208 KLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred hhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 00 00111 12234455677899999999998887765
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.10 E-value=1.1e-06 Score=68.69 Aligned_cols=292 Identities=11% Similarity=-0.004 Sum_probs=210.8
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHH-HHHHHHHHHhcCCHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT-YSILIKSCTKFHRFD 82 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 82 (351)
+...|++..|+.-|....+.++. +-.++-.-...|...|+-..|+.=+.++.+. +||-.. -..-...+.++|.++
T Consensus 48 lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchhhhhcccHH
Confidence 44578888999999888865333 3334444456788889999999999988874 787532 122234577999999
Q ss_pred HHHHHHHHHHHcCCCC--CHhHH------------HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc
Q 018743 83 LIEKILAEMSYLGIEC--SAVTY------------NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~~--~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (351)
.|..-|+...+....- ....+ ...+..+...|+...|+.....+++.. +-|...+..-..+|..
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHh
Confidence 9999999998875211 11111 223445667899999999999998873 5677788888999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----hHHHH---------HHH
Q 018743 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV----TYNIV---------IET 215 (351)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l---------~~~ 215 (351)
.|++..|+.-++...+.. ..+...+--+...+...|+.+.++...++..+. .||.. .|..+ +..
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888776654 455666667778888899999999988888775 34432 12211 122
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH
Q 018743 216 FGKAGHIEKMEEYFKKMKHRGMKPNS---ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292 (351)
Q Consensus 216 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 292 (351)
....++|.++++-.+...+....... ..+..+-.++...|++.+|++...++.+..+. |..++..-..+|.-...+
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHH
Confidence 34567788888888777766322122 23455666777889999999999999887654 688888888899988999
Q ss_pred HHHHHHHHHHHhc
Q 018743 293 EKMGELFLTMKER 305 (351)
Q Consensus 293 ~~a~~~~~~~~~~ 305 (351)
+.|+.-|+.+.+.
T Consensus 358 D~AI~dye~A~e~ 370 (504)
T KOG0624|consen 358 DDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.09 E-value=7.9e-08 Score=72.07 Aligned_cols=154 Identities=10% Similarity=0.049 Sum_probs=104.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 018743 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222 (351)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (351)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+..+. +...|..+...+...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3457778887776554432221 11 0112255666777677766665443 677788888888888888
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHH-HhcCC--HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAY-SKAGL--IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299 (351)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 299 (351)
++|...|++..+.. +.+...+..+..++ ...|+ .++|..++++..+.++. +...+..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888877764 44667777777754 56666 47888888888877766 6777777888888888888888888
Q ss_pred HHHHhcCCCCCHH
Q 018743 300 LTMKERHCVPDNI 312 (351)
Q Consensus 300 ~~~~~~~~~p~~~ 312 (351)
+++.+. .+|+..
T Consensus 168 ~~aL~l-~~~~~~ 179 (198)
T PRK10370 168 QKVLDL-NSPRVN 179 (198)
T ss_pred HHHHhh-CCCCcc
Confidence 888775 344443
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=2e-07 Score=71.19 Aligned_cols=290 Identities=11% Similarity=0.083 Sum_probs=199.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH-HHHHH
Q 018743 32 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT-IIDGY 110 (351)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 110 (351)
+.+.+..+.+..++++|++++..-.+.. +.+....+.+..+|....++..|-..++++... .|...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 5666777788899999999998877632 337777888899999999999999999999876 455555543 35667
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH--HHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018743 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI--SAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188 (351)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (351)
.+.+.+.+|+.+...|... ++...-..-+ ......+|+..+..++++....| +..+.+.......+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 7889999999999988542 2222222222 23456788889998888865433 4455555666677899999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------ccHH--------HHHHH
Q 018743 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-------------PNSI--------TYCSL 247 (351)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~l 247 (351)
.|.+-|....+-+-......|+..+. ..+.++.+.|++...++++.|++ ||.. .-+.+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999999877544335667886664 45678999999999999887643 1211 11233
Q ss_pred HH-------HHHhcCCHhHHHHHHHHhhh-cCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 248 VS-------AYSKAGLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319 (351)
Q Consensus 248 ~~-------~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 319 (351)
+. .+.+.|+++.|.+-+..|.. .....|+.+...+.-.- -.+++.+..+-+.-+.... +....||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence 33 34467889999888887752 23344566655443222 2344555555555555543 344678999999
Q ss_pred HHHHcCCHHHHHHHHH
Q 018743 320 AYNALGMTEAAQNLEN 335 (351)
Q Consensus 320 ~~~~~g~~~~A~~~~~ 335 (351)
.|++..-++.|..++.
T Consensus 319 lyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLA 334 (459)
T ss_pred HHhhhHHHhHHHHHHh
Confidence 9999998888877664
No 104
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=4.4e-07 Score=68.19 Aligned_cols=251 Identities=11% Similarity=0.115 Sum_probs=145.2
Q ss_pred HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743 36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115 (351)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (351)
++-+.-.|.+..++..-...... +.+...-..+.++|...|.+.....- +.... .|.......+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcch
Confidence 44455567777777766655442 23334444455666666665443322 22222 3344444444444444444
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018743 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195 (351)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (351)
.++-+.-+.+.........+......-...|+..|++++|++..... .+......=+..+.+..+.+-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333333222222233233333445677788888888877652 123333344455667777888888888
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743 196 FMQKRFFFPTVVTYNIVIETFGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271 (351)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 271 (351)
.|.+. .+..+.+.+..++.+ .+...+|.-+|++|.++ .+|+..+.+....++...|++++|..+++......
T Consensus 162 ~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 88764 245566666666654 34577888888888765 47788888888888888888888888888887776
Q ss_pred CccCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 018743 272 VILDTPFFNCIISAYGQAGDVEK-MGELFLTMKE 304 (351)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 304 (351)
.. ++.+...++.+-...|...+ ..+.+..+..
T Consensus 238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 65 56666666655555555433 3445555554
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.7e-07 Score=74.60 Aligned_cols=300 Identities=14% Similarity=0.048 Sum_probs=202.5
Q ss_pred HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhhcC
Q 018743 36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS-AVTYNTIIDGYGKAK 114 (351)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 114 (351)
..+.+..|+++.|+..|-..+... ++|...|..-..++...|++++|++=-.+-.+. .|+ ...|+....++.-.|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 356678999999999999988754 668888999999999999999998877777665 455 568999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC---CC----------------------------------------
Q 018743 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS---GN---------------------------------------- 151 (351)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~---------------------------------------- 151 (351)
++++|+..|.+-++.. +.+...++.+..++... ++
T Consensus 85 ~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999987763 44555566665554111 00
Q ss_pred -----HHHHHHHHHHHHh--------c-------CCCC------------C----------HHHHHHHHHHHHhcCCHHH
Q 018743 152 -----IEKMEKWYNEFNL--------M-------GVKA------------D----------IQTLNILTKSYGRAGMYDK 189 (351)
Q Consensus 152 -----~~~a~~~~~~~~~--------~-------~~~~------------~----------~~~~~~l~~~~~~~~~~~~ 189 (351)
.+...+..-.+.. . +..| + ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 0000000000000 0 0001 0 0112344555556666777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH-------HHHHHHHhcCCHhHHHH
Q 018743 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC-------SLVSAYSKAGLIMKVDS 262 (351)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~ 262 (351)
|.+-+....+.. -+..-++....++...|.+..+...-....+.|.. ...-|+ .+..++.+.++++.+..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 777777766654 35555666677788888877777766666655422 222222 23445666778888888
Q ss_pred HHHHhhhcCCccCHHh-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743 263 ILRQVENSDVILDTPF-------------------------FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317 (351)
Q Consensus 263 ~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 317 (351)
.|.+.......|+... ...-...+.+.|++..|++.|.+++... +-|...|...
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNR 398 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNR 398 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHH
Confidence 8887654333332211 1122456778899999999999999875 5578899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743 318 IQAYNALGMTEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 345 (351)
.-+|.+.|.+..|++-.+..++++|...
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ieL~p~~~ 426 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIELDPNFI 426 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999998877644
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.06 E-value=1.2e-07 Score=74.08 Aligned_cols=190 Identities=14% Similarity=0.038 Sum_probs=126.0
Q ss_pred CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--H
Q 018743 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI---QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--V 207 (351)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 207 (351)
......+..+...+...|++++|...++++.... +.+. ..+..+..++...|++++|...++.+.+..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3455567777888888999999999998887643 2222 45677788888889999999999988776432121 1
Q ss_pred hHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhH
Q 018743 208 TYNIVIETFGKA--------GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279 (351)
Q Consensus 208 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 279 (351)
.+..+..++... |+++.|.+.++.+.... +-+...+..+..... ... .. ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 344444455443 67788888888887662 222222222211110 000 00 0111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743 280 NCIISAYGQAGDVEKMGELFLTMKERHC--VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 280 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 342 (351)
..+...+.+.|++.+|+..++.+.+... +.....+..+..++.+.|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2456678899999999999999987521 22356888999999999999999999988876553
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.03 E-value=2.8e-07 Score=69.16 Aligned_cols=120 Identities=11% Similarity=-0.007 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-HhcCC--HHHH
Q 018743 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF-GKAGH--IEKM 225 (351)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 225 (351)
.++.+++...++...... +.+...|..+...|...|++++|...|++.....+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555544433 445555555555555666666666666555554332 444444444432 34444 3556
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271 (351)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 271 (351)
..++++..+.+ +-+...+..+...+...|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666555543 3344555555555555566666666665555543
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=3.5e-06 Score=79.38 Aligned_cols=304 Identities=11% Similarity=-0.013 Sum_probs=187.3
Q ss_pred HHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCC--HhHHHHHHH
Q 018743 37 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI------ECS--AVTYNTIID 108 (351)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~ 108 (351)
..+...|+++.+..+++.+... ....+..........+...|+++++..++......-- .+. ......+..
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 3455667777777777665321 0011122223334445678899999999887754310 111 112223344
Q ss_pred HHhhcCChHHHHHHHHHHHhcCCCCCCH----hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---CC--CHHHHHHHHH
Q 018743 109 GYGKAKKFEEMESSFSAMVESGGCHPDI----FTLNSMISAYGNSGNIEKMEKWYNEFNLMGV---KA--DIQTLNILTK 179 (351)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 179 (351)
.+...|++++|...+++...... ..+. ...+.+...+...|++++|...+.+.....- .+ .......+..
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 56678999999999998866321 1121 2345566677889999999999988764211 11 1234556677
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCc--cHHHHHHHH
Q 018743 180 SYGRAGMYDKMRSVMDFMQKR----FFF--P-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG--MKP--NSITYCSLV 248 (351)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~ 248 (351)
.+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 788999999999998876442 211 1 12334455666777899999999988875431 112 233455566
Q ss_pred HHHHhcCCHhHHHHHHHHhhhcCCcc-CHHhH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHH
Q 018743 249 SAYSKAGLIMKVDSILRQVENSDVIL-DTPFF-----NCIISAYGQAGDVEKMGELFLTMKERHCVPD---NITFATMIQ 319 (351)
Q Consensus 249 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~ 319 (351)
..+...|+.+.|...++......... ....+ ...+..+...|+.+.|...+........... ...+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 77888999999999988875421110 11111 1122445567899999999877654211111 112346677
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcc
Q 018743 320 AYNALGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~~~ 342 (351)
++...|++++|...+++++....
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~ 722 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENAR 722 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHH
Confidence 88899999999999999887643
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.7e-06 Score=65.11 Aligned_cols=254 Identities=12% Similarity=0.095 Sum_probs=170.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCH
Q 018743 73 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152 (351)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (351)
+-+.-.|++..++..-...... +.+...-.-+.++|...|.+....+-... . -.|.......+......-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~eI~~---~--~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISEIKE---G--KATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccccccc---c--cCChHHHHHHHHHHhhCcchh
Confidence 4455667887777666554433 13444444566778888876554333222 1 233444444444444445554
Q ss_pred HHHHH-HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 153 EKMEK-WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231 (351)
Q Consensus 153 ~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 231 (351)
+.-+. +.+.+.......+......-...|++.|++++|.+...... +......=+..+.+..+.+-|...+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 34444444334443444555667889999999999887622 233333335566788899999999999
Q ss_pred HHHcCCCccHHHHHHHHHHHHhc----CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 018743 232 MKHRGMKPNSITYCSLVSAYSKA----GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC 307 (351)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 307 (351)
|.+-. +..|.+.|..++.+. +.+..|.-+|+++.+. ..|++.+.+....++...|++++|..+++......
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 99753 667888788777753 5688999999999874 35688999999999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhcccC
Q 018743 308 VPDNITFATMIQAYNALGMTEAA-QNLENKMIAMKENS 344 (351)
Q Consensus 308 ~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~ 344 (351)
..++.+...++-.-...|...++ .+.+.+.....|..
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 34678888888777777876544 66777776666554
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=2.2e-07 Score=72.48 Aligned_cols=187 Identities=11% Similarity=0.004 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh---HH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV---TY 103 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 103 (351)
....+..+...+...|+++.|...|+.+.......|. ..++..+..++...|++++|...++++.+... .+.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHHH
Confidence 5667777777788888888888888877764211111 23566667777788888888888888876542 1222 34
Q ss_pred HHHHHHHhhc--------CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018743 104 NTIIDGYGKA--------KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175 (351)
Q Consensus 104 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (351)
..+..++... |++++|.+.|+.+.... +.+...+..+..... .. ... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~------~~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LR------NRL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HH------HHH--------HHHHH
Confidence 4455555543 66777888888777652 223223322211100 00 000 00112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFF--PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235 (351)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (351)
.+...+.+.|++++|...++........ .....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566788999999999999998776331 23567888899999999999999998888765
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=8e-08 Score=81.83 Aligned_cols=215 Identities=7% Similarity=-0.041 Sum_probs=145.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743 31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110 (351)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (351)
.-..+...+...|-...|+.+|+++.. |..++.+|...|+..+|..+..+..+. +|++..|..+.+..
T Consensus 400 ~q~~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334456677777888888888877653 666777788888888888887777763 67888888877777
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018743 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190 (351)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (351)
....-+++|.++.+....+ +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 7666677777777665332 12222222334677777777777665543 44556666667777777777777
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 268 (351)
.+.|.......+. +...||.+-.+|.+.++..+|...+++..+.+ .-+...|...+....+.|.++.|.+.+.++.
T Consensus 539 v~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 539 VKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 7777776654322 45677777777777777777777777777765 3345566666666677777777777777654
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.99 E-value=3.5e-07 Score=68.62 Aligned_cols=160 Identities=11% Similarity=-0.022 Sum_probs=118.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc
Q 018743 69 SILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148 (351)
Q Consensus 69 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (351)
..+-..+...|+-+....+........ +.+......++....+.|++..|...+.+.... -++|..+|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHH
Confidence 555566777777777777776654332 445566666888888888888888888888665 37788888888888888
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228 (351)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 228 (351)
.|+++.|..-|.+..+.. +-+....+.+.-.+.-.|+.+.|..++......+.. |...-..+..+....|++++|.++
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 888888888888877653 345566777777788888888888888887776443 566667777788888888888887
Q ss_pred HHHHH
Q 018743 229 FKKMK 233 (351)
Q Consensus 229 ~~~~~ 233 (351)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 66544
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=6.9e-07 Score=79.30 Aligned_cols=147 Identities=7% Similarity=0.019 Sum_probs=103.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 018743 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246 (351)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 246 (351)
.+.+...+..|.....+.|.+++|..+++...+..+. +......++..+.+.+++++|...+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3455777777778888888888888888887775332 44555666777778888888888888877764 445666677
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317 (351)
Q Consensus 247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 317 (351)
+..++.+.|++++|..+|+++...++. +..++..+..++...|+.++|...|++..+. ..|....|+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 777777888888888888887774443 5677777777888888888888888887765 33444444443
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.98 E-value=5.2e-07 Score=67.74 Aligned_cols=163 Identities=12% Similarity=0.013 Sum_probs=101.7
Q ss_pred CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743 99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178 (351)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (351)
|..+ ..+-..+...|+-+....+..+.... .+.|.......+....+.|++..|...+.+..... ++|...++.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 3334 44555666666666666666665332 24444455556666677777777777777766543 56667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258 (351)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 258 (351)
-+|.+.|+++.|..-|.+..+.... ++..++.+.-.+.-.|+.+.|..++......+ +-|...-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 7777777777777777666665333 45556666666666777777777776666553 335556666666666677777
Q ss_pred HHHHHHHHh
Q 018743 259 KVDSILRQV 267 (351)
Q Consensus 259 ~a~~~~~~~ 267 (351)
+|.++...-
T Consensus 220 ~A~~i~~~e 228 (257)
T COG5010 220 EAEDIAVQE 228 (257)
T ss_pred HHHhhcccc
Confidence 776665543
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.7e-06 Score=75.18 Aligned_cols=232 Identities=12% Similarity=0.076 Sum_probs=153.4
Q ss_pred cccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCC--------CccHHHHHHHHH
Q 018743 2 VMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC--------KPDVYTYSILIK 73 (351)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~l~~ 73 (351)
..|...|+.+.|.+-.+.+. +..+|..+.+.|.+..+++-|.-.+-.|...+|. .|+ .+=....-
T Consensus 736 SfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 35677899999988877765 5678999999999998888776666665543322 222 22222233
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHH
Q 018743 74 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153 (351)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (351)
.....|..++|+.+|++-++. ..|=..|...|.|++|.++-+.--+ +.. ..||......+...+|.+
T Consensus 809 LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR---iHL-r~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR---IHL-RNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc---eeh-hhhHHHHHHHHHhhccHH
Confidence 355778889999999887754 3455667788999999988775321 222 236666777777788888
Q ss_pred HHHHHHHHHH----------hcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 018743 154 KMEKWYNEFN----------LMG---------VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE 214 (351)
Q Consensus 154 ~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 214 (351)
.|+++|++.. ... -..|...|......+-..|+.+.|+.+|....+ |-.+++
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 8888887632 111 112344455555666666777777777765543 445666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 268 (351)
..+-.|+.++|..+-++ .-|....-.|.+.|...|++.+|..+|.+..
T Consensus 947 I~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66777777777766543 2255556667778888888888888877654
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.95 E-value=1.7e-07 Score=66.46 Aligned_cols=95 Identities=8% Similarity=-0.126 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (351)
+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+.....++. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4445566667777777777777766654 446666777777777777777777777777766554 66666677777777
Q ss_pred cCCHHHHHHHHHHHHhc
Q 018743 289 AGDVEKMGELFLTMKER 305 (351)
Q Consensus 289 ~g~~~~a~~~~~~~~~~ 305 (351)
.|++++|+..|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777664
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.93 E-value=6e-08 Score=68.82 Aligned_cols=114 Identities=8% Similarity=-0.041 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018743 227 EYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306 (351)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 306 (351)
.++++..+. .|+ .+..+...+...|++++|...|+.+....+. +...+..+..++...|++++|...|++.....
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555554 344 3556788889999999999999999988766 88899999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
+.+...+..+..++...|++++|+..+++.++..|....
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 457888999999999999999999999999999887654
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.92 E-value=2.8e-06 Score=75.53 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 018743 65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144 (351)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 144 (351)
+..+..|.....+.|..++|..+++...+.. |.+......+...+.+.+++++|+..+++..... +.+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHH
Confidence 4444444444444444444444444444442 2233344444444444444444444444444432 333333444444
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 145 AYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199 (351)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (351)
++.+.|++++|..+|+++...+ +.+..++..+...+...|+.++|...|+...+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444421 22344444444444444444444444444433
No 119
>PF12854 PPR_1: PPR repeat
Probab=98.92 E-value=2.5e-09 Score=54.38 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743 306 HCVPDNITFATMIQAYNALGMTEAAQNLENKM 337 (351)
Q Consensus 306 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (351)
|+.||..||+++|.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 67888888888888888888888888888877
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.91 E-value=2.5e-06 Score=76.88 Aligned_cols=219 Identities=16% Similarity=0.158 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 106 (351)
+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+.+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 5778888888888889999999988877764 34432 233333345555554433333 33
Q ss_pred HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018743 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186 (351)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (351)
+.......++.-+.-+...+.. ..-+..++..+..+|-+.|+.+++..+|+++.+.. +.|..+.|.+...|... +
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 4444444455333333334433 23344577778888888888888888888888876 66777888888888888 8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------------------CCCccHHHHHHH
Q 018743 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-------------------GMKPNSITYCSL 247 (351)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~l 247 (351)
.++|.+++.+.... +...+++..+.++|.++... |..--..++-.+
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 88888887776554 33333444444444444443 212223344444
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHH
Q 018743 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287 (351)
Q Consensus 248 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 287 (351)
...|....+++++..+++.+.+.... |......++.+|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 55566666677777777777666555 5555555555554
No 121
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=2.1e-05 Score=70.25 Aligned_cols=204 Identities=14% Similarity=0.195 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 106 (351)
|++....-+.++...+-+.+-+++++++.-... +.-+...-+.|+-...+ -+...+.++.+++...+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------H
Confidence 566666677788888888888888888765211 11122223333333333 34455666666665443 122 2
Q ss_pred HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018743 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186 (351)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (351)
.......+-+++|..+|++. ..+..+.+.++. ..+..+.|.++-++. ..+..|+.+..+-.+.|.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCc
Confidence 33344555566666666654 223333333333 123344444443332 123345555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHH
Q 018743 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDS 262 (351)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 262 (351)
..+|.+-|-+. .|+..|..++....+.|.+++-.+++...++..-.|.. =+.|+-+|++.++..+.+.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHH
Confidence 55555444321 24455555555555555555555555555444333322 2345555555555444333
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.86 E-value=1.9e-07 Score=65.87 Aligned_cols=92 Identities=11% Similarity=-0.003 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290 (351)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 290 (351)
.+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...++...+.++. +...+..+..++...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcC
Confidence 33444444555555555555544432 334444444444454555555555555544444322 3344444444455555
Q ss_pred CHHHHHHHHHHHHh
Q 018743 291 DVEKMGELFLTMKE 304 (351)
Q Consensus 291 ~~~~a~~~~~~~~~ 304 (351)
++++|...|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554444
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=6.7e-09 Score=52.78 Aligned_cols=32 Identities=38% Similarity=0.763 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 018743 24 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDM 55 (351)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 55 (351)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 124
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.82 E-value=3.4e-06 Score=74.76 Aligned_cols=183 Identities=11% Similarity=0.049 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 018743 8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87 (351)
Q Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 87 (351)
++...|+..|-+..+..+. =...|..|...|+...+..+|...|+...+.+ ..+...+......|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHH
Confidence 3455566666555554333 35577777887877777778888888877643 44566677777788888888888777
Q ss_pred HHHHHHcCCCCC--HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 018743 88 LAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165 (351)
Q Consensus 88 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (351)
.-...+.. +.- ...|....-.|.+.++...|...|+...+.. |.|...|..+..+|.+.|++..|.++|.+....
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 43332221 111 1122234445666777777777777776653 556667777788888888888888888776553
Q ss_pred CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 166 GVKADI-QTLNILTKSYGRAGMYDKMRSVMDFMQ 198 (351)
Q Consensus 166 ~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (351)
.|+. ..--...-..+..|.+.++...+..+.
T Consensus 626 --rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 626 --RPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred --CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2332 111122233455677777766666553
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=5e-06 Score=62.23 Aligned_cols=190 Identities=11% Similarity=0.096 Sum_probs=129.9
Q ss_pred hcCChHHHHHHHHHHHhcC--C-CCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018743 112 KAKKFEEMESSFSAMVESG--G-CHPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187 (351)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~--~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (351)
...+.++..+++.++.... | ..++.. .|..++-+....|+.+.|..+++.+...- +.+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 3456788888888776532 2 334444 34455566677788888888888876643 44444443334445567888
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 018743 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267 (351)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 267 (351)
++|.++++.+.+..+ .|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 888888888877653 36667766666666777777888777777766 4678888888888888888888888888887
Q ss_pred hhcCCccCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhc
Q 018743 268 ENSDVILDTPFFNCIISAYGQAG---DVEKMGELFLTMKER 305 (351)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 305 (351)
.-..|. ++..+..+...+.-.| +...+.++|.+..+.
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 766554 6666666666554443 466677778777764
No 126
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1e-05 Score=72.06 Aligned_cols=282 Identities=15% Similarity=0.163 Sum_probs=140.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 018743 7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86 (351)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 86 (351)
.+-+++|..+|.... .+..+.+.|+. .-+.+++|.++-++..+ +..|..+..+-.+.|...+|.+
T Consensus 1061 ~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n~-------p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCNE-------PAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhCC-------hHHHHHHHHHHHhcCchHHHHH
Confidence 344556666665432 24445555544 33455566555554432 2346666666666666666665
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 018743 87 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166 (351)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 166 (351)
-|-+. .|+..|..+++...+.|.|++-.+.+.-..++. -.|. .-+.++-+|++.++..+..+++.
T Consensus 1126 Syika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~--id~eLi~AyAkt~rl~elE~fi~------ 1190 (1666)
T KOG0985|consen 1126 SYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPY--IDSELIFAYAKTNRLTELEEFIA------ 1190 (1666)
T ss_pred HHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCcc--chHHHHHHHHHhchHHHHHHHhc------
Confidence 54332 255566666777777777777666666554442 2332 23456666666666655444331
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH---------------
Q 018743 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK--------------- 231 (351)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------------- 231 (351)
-|+......+..-|...+.++.|.-+|.. +..|..+...+...|++..|.+.-++
T Consensus 1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred -CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 34555555555556666666665555542 33345555555555555555443332
Q ss_pred ---------HHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 232 ---------MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302 (351)
Q Consensus 232 ---------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 302 (351)
|...++-....-...++..|...|-+++.+.+++......-. ....|+.|.-.|.+- +.++..+.++-.
T Consensus 1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA-HMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA-HMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH-HHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 111122222333444555555555555555555543322111 233444444444432 233333322222
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743 303 KERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336 (351)
Q Consensus 303 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (351)
-. ....-.+++++.+..-|.+..-++.+
T Consensus 1339 ws------RvNipKviRA~eqahlW~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1339 WS------RVNIPKVIRAAEQAHLWSELVFLYDK 1366 (1666)
T ss_pred HH------hcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 11223456677766666666655543
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=2.3e-05 Score=58.84 Aligned_cols=189 Identities=8% Similarity=0.045 Sum_probs=118.6
Q ss_pred CCHHHHHHHHHHHHHc---C-CCCCHh-HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHH
Q 018743 79 HRFDLIEKILAEMSYL---G-IECSAV-TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153 (351)
Q Consensus 79 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (351)
.+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++..+ ++.+..+-..-...+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchh
Confidence 3455555655555432 2 333333 3444555566677777788777777665 3333333333333445567778
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233 (351)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (351)
+|+++++.+.+.+ +.|..++..-+...-..|..-+|++-+....+.. ..|...|.-+...|...|+++.|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888877765 5566666666666666777777777777766653 3478888888888888888888888888877
Q ss_pred HcCCCccHHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcCC
Q 018743 234 HRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDV 272 (351)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~ 272 (351)
-.. |.++..+..+...+...| +.+.+.+.|.+..+..+
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 653 445555566666555444 44557777777776644
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.80 E-value=3.1e-06 Score=76.26 Aligned_cols=235 Identities=13% Similarity=0.078 Sum_probs=157.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH
Q 018743 62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141 (351)
Q Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 141 (351)
+.+...+..|+..+...+++++|.++.+...+.. |-....|..+...+.+.++..++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL------------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh------------------h
Confidence 4456788899999999999999999999777663 33344444455566666665554444 2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 018743 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221 (351)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (351)
++.......++..+..+...+... .-+...+..++.+|.+.|+.+++..+++++.+..+. ++...|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 333333444454444444455542 345567888999999999999999999999998744 889999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHH---H--HhcCCHhHHHHHHHHhhhc-CCccCHHhHHHHHHHHHhcCCHHHH
Q 018743 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSA---Y--SKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKM 295 (351)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~--~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a 295 (351)
.++|..++.+.+..-+ +..-|+.+... + ....+++.-..+.+.+... +..--..++-.+-..|-..++|+++
T Consensus 165 L~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 165 KEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 9999999998876521 11111111111 1 1223444445555555433 3233345566667788888899999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018743 296 GELFLTMKERHCVPDNITFATMIQAYN 322 (351)
Q Consensus 296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (351)
..+++.+.+.. +-|.....-++..|.
T Consensus 243 i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 99999999863 335666777777776
No 129
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.79 E-value=2.7e-06 Score=73.21 Aligned_cols=165 Identities=17% Similarity=0.243 Sum_probs=79.9
Q ss_pred HhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018743 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189 (351)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 189 (351)
-.....|.+|+.+++.+..+ .....-|..+...|...|+++.|.++|.+.- .++--+.+|.+.|+|+.
T Consensus 742 ai~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 33455566666666655433 2222345555666666666666666665421 23345566666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743 190 MRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 269 (351)
|.++-.+.. |+......|-.-..-+-..|++.+|.++|-.+- .|+. .|..|-+.|..+..+++..+-..
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 666554432 223334444444444555555555555543221 2221 23444455555544444433221
Q ss_pred cCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743 270 SDVILDTPFFNCIISAYGQAGDVEKMGELFL 300 (351)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 300 (351)
..-..+...+..-+-..|+...|..-|-
T Consensus 879 ---d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred ---hhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 1112233444445555555555555443
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=9.1e-07 Score=62.43 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=68.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 95 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 95 (351)
.++...+..+. +......+...+...|++++|.+.|+.+.... +.+...+..+...+...|+++.|..+++...+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444333 44555566666667777777777777666532 3455566666666667777777777777666654
Q ss_pred CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 96 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
+.+...+..+..++...|++++|.+.|+...+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666666666677777777777777766654
No 131
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.74 E-value=5.1e-06 Score=73.75 Aligned_cols=152 Identities=8% Similarity=-0.023 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 018743 8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87 (351)
Q Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 87 (351)
-+...|.+.|+..-+.+.. +...+......|++..+++.|..+.-...+......-...|....-.+...++...+...
T Consensus 506 ~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 506 DDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence 3667888899988887655 888999999999999999999998544433211111122243444457788999999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743 88 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNL 164 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (351)
|+...+.. |.|...|..++.+|.++|++..|.++|.+.... .|+.. .-....-.-+..|.+.++...+.....
T Consensus 585 fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 585 FQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL---RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc---CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99988876 668889999999999999999999999988654 44432 222233445678889998888877653
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=5.5e-05 Score=62.27 Aligned_cols=231 Identities=10% Similarity=0.027 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCC-CCccHHHHHHHHHHHHhcCCHHHHH
Q 018743 10 PEQASLLFEVMLS---DGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIE 85 (351)
Q Consensus 10 ~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 85 (351)
.....+.|+++.. .+-.|... ++..=.-..++..+...-+++....+ -.|+...+...+.+......-..+.
T Consensus 219 p~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~ 294 (484)
T COG4783 219 PQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAA 294 (484)
T ss_pred chhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchH
Confidence 4445667777763 33333322 12222233445555555666654322 2344445555555443333323333
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 018743 86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165 (351)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (351)
.++.+..+ +.-....-...-.+...|++++|+..++.++.. .|.|+..+......+.+.++..+|.+.++.+...
T Consensus 295 ~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l 369 (484)
T COG4783 295 DLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369 (484)
T ss_pred HHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 33322222 112222333334455678888888888887765 3556666666777888888888888888887764
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 018743 166 GVKAD-IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244 (351)
Q Consensus 166 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 244 (351)
. |+ ....-.+..++.+.|++.+|..++......... |+..|..+.++|...|+..++..-..+.
T Consensus 370 ~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~------------ 434 (484)
T COG4783 370 D--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG------------ 434 (484)
T ss_pred C--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH------------
Confidence 3 43 455566777888888888888888777665433 7778888888888888777766554433
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743 245 CSLVSAYSKAGLIMKVDSILRQVENS 270 (351)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 270 (351)
+...|+++.|...+....+.
T Consensus 435 ------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 ------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ------HHhCCCHHHHHHHHHHHHHh
Confidence 34456677777666665543
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.68 E-value=3.5e-06 Score=60.09 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH--HhHHHH
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN---SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT--PFFNCI 282 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l 282 (351)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777777777653 323 233344556777788888888888887776533322 234456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337 (351)
Q Consensus 283 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (351)
...+...|++++|+..++..... ...+..+......|.+.|++++|+..|++.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777888888888888664332 234455667777788888888888888765
No 134
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=3.6e-05 Score=67.39 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=50.9
Q ss_pred HHHHHhcCCHhHHHHHHHH--------h--hhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----------cC-
Q 018743 248 VSAYSKAGLIMKVDSILRQ--------V--ENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE----------RH- 306 (351)
Q Consensus 248 ~~~~~~~g~~~~a~~~~~~--------~--~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~- 306 (351)
+..|-+.|.+.+|+++-=+ + .+.+...|+...+.-...++...++++|..++-..++ .|
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv 1121 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNV 1121 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445566666666654211 1 1233344666666666677777777777666543321 11
Q ss_pred ---------------CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743 307 ---------------CVPDN----ITFATMIQAYNALGMTEAAQNLENK 336 (351)
Q Consensus 307 ---------------~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (351)
-.|+. .....+...|.++|.+..|-+-|.+
T Consensus 1122 ~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1122 RVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred chhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 12222 3566777889999998888665543
No 135
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.65 E-value=2.3e-05 Score=67.75 Aligned_cols=284 Identities=14% Similarity=0.142 Sum_probs=128.3
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 018743 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 85 (351)
..++|.+|+.+++.+...+. -..-|..+.+.|...|+++.|.++|-+... ++-.+..|.+.|+|..|.
T Consensus 744 ~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccHHHHH
Confidence 34445555555555544321 122344445555555555555555543221 333444555555555555
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 018743 86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165 (351)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (351)
++-.+.. |...+...|..-..-+-+.|++.+|.++|-.+. .|+. .|..|-+.|..+..+++..+-..
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~- 878 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG- 878 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhCh-
Confidence 5444332 223334444444444445555555555544331 2222 23455555555555555544321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH--
Q 018743 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT-- 243 (351)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 243 (351)
..-..|...+..-+-..|+...|...|-+..+ |...+..|-..+-|++|.++-+. .| ..|..-
T Consensus 879 --d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---eg-g~n~~k~v 943 (1636)
T KOG3616|consen 879 --DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EG-GANAEKHV 943 (1636)
T ss_pred --hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cc-cccHHHHH
Confidence 11123444555566666666666665544322 33444445555555555444332 11 111110
Q ss_pred ----------------------HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 244 ----------------------YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301 (351)
Q Consensus 244 ----------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 301 (351)
...-+...+..+.++-|..+-+-..+.. ...+.-.+...+-..|++++|-+.|-+
T Consensus 944 ~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyve 1020 (1636)
T KOG3616|consen 944 AFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVE 1020 (1636)
T ss_pred HHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHH
Confidence 1111122223333444444333333221 112233444455667788888777777
Q ss_pred HHhcCCCCCHHHHHHHH-----HHHHHcC-CHHHHHHHH
Q 018743 302 MKERHCVPDNITFATMI-----QAYNALG-MTEAAQNLE 334 (351)
Q Consensus 302 ~~~~~~~p~~~~~~~l~-----~~~~~~g-~~~~A~~~~ 334 (351)
.++.+- -..||-..+ .-+.+.| ++++|..+|
T Consensus 1021 aiklnt--ynitwcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 1021 AIKLNT--YNITWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred Hhhccc--ccchhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 765421 122333221 2245666 677777665
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=5.4e-05 Score=62.29 Aligned_cols=119 Identities=18% Similarity=0.105 Sum_probs=80.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc-HHHHHHHHHHHHhcCCHh
Q 018743 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN-SITYCSLVSAYSKAGLIM 258 (351)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 258 (351)
.+...|+++.|+..++.+....+ -|+..+......+...++.++|.+.++++... .|+ ......+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 34456777777777777666532 25555556667777777777777777777765 333 455566777777777777
Q ss_pred HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 302 (351)
+|..+++......+. |+..|..|.++|...|+..++.....+.
T Consensus 392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 777777777766655 7777777777777777776666555443
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=0.00033 Score=62.03 Aligned_cols=192 Identities=11% Similarity=0.047 Sum_probs=100.7
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTA-LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 84 (351)
..+++.+|++..+.+.+.. |+...... -.-.+.+.|+.++|..+++...... ..|..|...+-.+|...++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHH
Confidence 3456666666666666552 22221111 1223456666666666666555422 12555666666666666666666
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHH--------------------------------------------HH
Q 018743 85 EKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE--------------------------------------------ME 120 (351)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------------------------------------------a~ 120 (351)
..+|+..... -|+......+..+|.+.+.+.+ |.
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 6666666554 3445555555555555544433 23
Q ss_pred HHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 121 SSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE-FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (351)
+.++.+.+..|...+..-.......+...|++++|.+++.. ..+.-.+.+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 33333333322111122222223344456667777777733 22222233444445666777778888888888888777
Q ss_pred cCCC
Q 018743 200 RFFF 203 (351)
Q Consensus 200 ~~~~ 203 (351)
.+..
T Consensus 255 k~~D 258 (932)
T KOG2053|consen 255 KGND 258 (932)
T ss_pred hCCc
Confidence 6543
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.57 E-value=5.9e-06 Score=68.11 Aligned_cols=120 Identities=12% Similarity=0.016 Sum_probs=55.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 018743 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI 222 (351)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (351)
+..+...++++.|+.+++++.+.. |+ ....++..+...++..+|.+++.+....... +...+..-...+.+.+++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 334444455555555555554432 22 2223444444445555555555544433221 344444444445555555
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 268 (351)
+.|+.+.+++.... |-+..+|..|..+|...|+++.|+..++.+.
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55555555555441 2233355555555555555555555554433
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.56 E-value=6.4e-06 Score=67.90 Aligned_cols=121 Identities=16% Similarity=0.132 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290 (351)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 290 (351)
.++..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+..+..+. +...+..-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 34444445556666666666666542 33 2233555555555556666666665544333 4555555555566666
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337 (351)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (351)
+++.|+++.+++.+. .+-+..+|..|..+|.+.|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 666666666666654 1223446666666666666666666665544
No 140
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.55 E-value=0.00034 Score=58.57 Aligned_cols=312 Identities=12% Similarity=0.138 Sum_probs=176.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 018743 20 MLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS 99 (351)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 99 (351)
-.+.++. |..+|..||+-+..+ .++++.+.++++... .+-+...|..-+..-.+.++++.++.+|.+....- .+
T Consensus 12 rie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 12 RIEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 3344444 999999999987666 899999999999964 35567789999999999999999999999988763 46
Q ss_pred HhHHHHHHHHHhh-cCCh----HHHHHHHHHHHhcCCCCCC-HhHHHHHHHHH---------hcCCCHHHHHHHHHHHHh
Q 018743 100 AVTYNTIIDGYGK-AKKF----EEMESSFSAMVESGGCHPD-IFTLNSMISAY---------GNSGNIEKMEKWYNEFNL 164 (351)
Q Consensus 100 ~~~~~~l~~~~~~-~~~~----~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~ 164 (351)
...|...+.--.+ .++. +...+.|+-..+.-|..+- ...|+..+..+ ....+++...++|+++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 7777776653332 2222 2233344444444333222 22344433322 122234445555555433
Q ss_pred cCCCCCHHH-----------------------------------------------------------------HHHHHH
Q 018743 165 MGVKADIQT-----------------------------------------------------------------LNILTK 179 (351)
Q Consensus 165 ~~~~~~~~~-----------------------------------------------------------------~~~l~~ 179 (351)
..+..=... |..+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 211000000 100000
Q ss_pred H-------------------------------------------------HHhcCC-------HHHHHHHHHHHHHcCCC
Q 018743 180 S-------------------------------------------------YGRAGM-------YDKMRSVMDFMQKRFFF 203 (351)
Q Consensus 180 ~-------------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~ 203 (351)
- +...|+ .+++..+++.....-..
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 0 000010 11122222221111111
Q ss_pred CCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-CHHh
Q 018743 204 PTVVTYNIVIETFGKA---GHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPF 278 (351)
Q Consensus 204 ~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~ 278 (351)
-+..+|..+...--.. ...+....++.++...- +.|+ .+|..++..-.+..-+..|..+|.++.+.+..+ ++.+
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfV 404 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFV 404 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhH
Confidence 1111111111110000 11333444444444321 2222 456777777777788899999999999877766 6677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
.++++..+| .++.+-|.++|+--.+. ...++..-...+.-+...++-..|+.+|++.+..
T Consensus 405 a~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 405 AAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 777887666 57889999999976654 3334444567777888888888888888888877
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.53 E-value=1.2e-05 Score=57.37 Aligned_cols=127 Identities=11% Similarity=0.118 Sum_probs=65.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhccCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHH
Q 018743 31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTII 107 (351)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 107 (351)
.|..++..+ ..++...+...++.+.+..+-.+ .....-.+...+...|++++|...|+........++ ......|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444443 35666666666666665321110 112233334455566666666666666666542222 12333455
Q ss_pred HHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743 108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161 (351)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (351)
..+...|++++|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666666666666553211 22333455555666666666666666654
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=8.3e-06 Score=56.04 Aligned_cols=102 Identities=15% Similarity=0.077 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 018743 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV--PDNITFATMI 318 (351)
Q Consensus 243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~ 318 (351)
++..++..+...|++++|...+..+.+..+. .....+..+..++.+.|++++|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555555566666666666665543321 01234444555666666666666666665543111 1133455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 319 QAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
.++.+.|++++|...++++++..|.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 56666666666666666666655543
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.45 E-value=0.00095 Score=59.31 Aligned_cols=226 Identities=10% Similarity=0.058 Sum_probs=151.0
Q ss_pred HhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743 39 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS--CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116 (351)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (351)
....+++..|+....++.+.. |+.. |..++.+ ..+.|+.++|..+++.....+.. |..|...+-.+|...++.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 346788999999999988754 4432 3333443 55899999999999988776644 888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------
Q 018743 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM---------- 186 (351)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------- 186 (351)
++|..+|++..+. .|+..-...+..+|.+.+++.+-.+.--++-+ ..+.+...|-.+++.+...-.
T Consensus 94 d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 94 DEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 9999999999876 46677777788889998887654444333333 234455555555555443211
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHH
Q 018743 187 YDKMRSVMDFMQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYF-KKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSIL 264 (351)
Q Consensus 187 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 264 (351)
..-|.+.++.+.+.+ .--+..-.......+...|++++|.+++ ....+.-.+.+...-+.-+..+...+++.+..++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 123445555554443 1112222222233445678899999988 44444433445555566777788888999988888
Q ss_pred HHhhhcCCc
Q 018743 265 RQVENSDVI 273 (351)
Q Consensus 265 ~~~~~~~~~ 273 (351)
.++...+..
T Consensus 250 ~~Ll~k~~D 258 (932)
T KOG2053|consen 250 SRLLEKGND 258 (932)
T ss_pred HHHHHhCCc
Confidence 888877654
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.45 E-value=6.9e-06 Score=53.73 Aligned_cols=97 Identities=19% Similarity=0.148 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (351)
+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 334455556666677777777666655433 33555566666666777777777777766542 2234566666667777
Q ss_pred cCCHHHHHHHHHHHHHhcc
Q 018743 324 LGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 324 ~g~~~~A~~~~~~~~~~~~ 342 (351)
.|+++.|...+++.++..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 7777777777777665443
No 145
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.41 E-value=2.4e-05 Score=54.93 Aligned_cols=91 Identities=4% Similarity=-0.122 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291 (351)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 291 (351)
+...+...|++++|..+|+-+.... +.+..-|..|..++-..|++++|+..|......++. ++..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence 3444455666666666666665543 334455556666666666666666666666655544 55555566666666666
Q ss_pred HHHHHHHHHHHHh
Q 018743 292 VEKMGELFLTMKE 304 (351)
Q Consensus 292 ~~~a~~~~~~~~~ 304 (351)
.+.|.+.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.38 E-value=8.4e-07 Score=45.78 Aligned_cols=33 Identities=42% Similarity=0.567 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 310 (351)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777766
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.37 E-value=1.1e-05 Score=66.83 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH
Q 018743 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR--FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC 245 (351)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (351)
+.+......++..+....+.+.+..++-+.... ....-+.|..++++.|...|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444444444444455555544444432 111112233345555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHH
Q 018743 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280 (351)
Q Consensus 246 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 280 (351)
.|+..+.+.|++..|.++...|...+...++.++.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~ 177 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQA 177 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHH
Confidence 55555555555555555554444333333333333
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=0.00023 Score=57.47 Aligned_cols=258 Identities=9% Similarity=-0.049 Sum_probs=128.5
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFD 82 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 82 (351)
+.+..++..|+..+....+..+. +..-|..-+..+...|++++|+--.++-.+. +|. .......-+++...++..
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~---kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL---KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec---CCCccccccchhhhhhhhHHHH
Confidence 44566777788888877777655 5666666666677777777776655554432 111 112222222233333333
Q ss_pred HHHHHHH---------------HHHHcC-CCCCHhHHHHH-HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 018743 83 LIEKILA---------------EMSYLG-IECSAVTYNTI-IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145 (351)
Q Consensus 83 ~a~~~~~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (351)
+|.+.++ ...... -+|.-.++..+ ..++.-.|++++|.+.--.+++.. ..+......--.+
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLC 212 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccc
Confidence 3332222 111111 11222333322 244556677777777766665543 2222222222233
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCCHHHHH-------------HHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHhH
Q 018743 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLN-------------ILTKSYGRAGMYDKMRSVMDFMQKR---FFFPTVVTY 209 (351)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~ 209 (351)
+.-.++.+.+...|++.+..+ |+...-. .-..-..+.|.+..|.+.+.+.+.. +..|+...|
T Consensus 213 ~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred cccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH
Confidence 444667777777777766543 3322111 1122234566666666666665543 233445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270 (351)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 270 (351)
.....+..+.|+..+|+.--......+ +.-...+..-..++...+++++|.+-++...+.
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555556666666666666655555432 111122333333444556666666666665544
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.32 E-value=2.3e-05 Score=65.09 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=71.6
Q ss_pred CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC-CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018743 97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC-HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLN 175 (351)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (351)
+.+......+++.+....+.+.+..++-+....... ..-..|..++++.|...|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555566666666666666666666443211 1122344566666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 018743 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218 (351)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (351)
.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666555544455555444444443
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.31 E-value=2.4e-06 Score=54.47 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=42.8
Q ss_pred cCCHhHHHHHHHHhhhcCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743 254 AGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332 (351)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 332 (351)
.|+++.|+.+++++.+..+. ++...+..+..++.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35666666666666655442 2333444456666666666666666666 22111 122333344566666666666666
Q ss_pred HHHH
Q 018743 333 LENK 336 (351)
Q Consensus 333 ~~~~ 336 (351)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.30 E-value=1.5e-06 Score=44.41 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 309 (351)
+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666666665554
No 152
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.29 E-value=1.9e-06 Score=44.38 Aligned_cols=33 Identities=45% Similarity=0.813 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 240 (351)
+|+.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.29 E-value=2.6e-05 Score=64.45 Aligned_cols=102 Identities=9% Similarity=-0.015 Sum_probs=85.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291 (351)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 291 (351)
-...+...|++++|+..|.++++.. +-+...|..+..++...|++++|+..++++.+..+. +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 3556678899999999999999875 557788889999999999999999999999988765 77888899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743 292 VEKMGELFLTMKERHCVPDNITFATM 317 (351)
Q Consensus 292 ~~~a~~~~~~~~~~~~~p~~~~~~~l 317 (351)
+++|+..|+++.+. .|+.......
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 99999999999975 4554444333
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.29 E-value=0.00015 Score=50.98 Aligned_cols=91 Identities=4% Similarity=-0.071 Sum_probs=43.6
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 018743 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327 (351)
Q Consensus 248 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 327 (351)
...+...|++++|.++|+.+...++. +...|-.|.-++-..|++.+|+..|..+.... +-|+..+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 33344445555555555554444433 44444445555555555555555555544433 22344444444555555555
Q ss_pred HHHHHHHHHHHHh
Q 018743 328 EAAQNLENKMIAM 340 (351)
Q Consensus 328 ~~A~~~~~~~~~~ 340 (351)
+.|++.|+.++..
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.26 E-value=2.5e-06 Score=43.63 Aligned_cols=32 Identities=38% Similarity=0.690 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 239 (351)
+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555566666666666555555554
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=0.0001 Score=50.57 Aligned_cols=97 Identities=15% Similarity=0.035 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc--CHHhHHHHHH
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGM--KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL--DTPFFNCIIS 284 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 284 (351)
+...+..+...|++++|.+.+..+..... +.....+..+..++...|+++.|...++.+....+.. ...++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 44455566666777777777766665421 0113345556666667777777777777666543221 2345556666
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 018743 285 AYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 285 ~~~~~g~~~~a~~~~~~~~~~ 305 (351)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 667777777777777777665
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.26 E-value=2.7e-06 Score=54.19 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHH
Q 018743 8 KQPEQASLLFEVMLSDGLK-PSVDVYTALVSAYGQSGLLDEAFSTIND 54 (351)
Q Consensus 8 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 54 (351)
|+++.|+.+++++.+..+. ++...+..+..++.+.|++++|+++++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444444321 1223333344444444444444444444
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.25 E-value=0.00014 Score=63.05 Aligned_cols=143 Identities=5% Similarity=0.020 Sum_probs=102.2
Q ss_pred CCCCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC--------CHhHHHHHHHHh
Q 018743 201 FFFPTVVTYNIVIETFGKA-----GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG--------LIMKVDSILRQV 267 (351)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~ 267 (351)
..+.+...|...+++.... +..+.|..+|++..+.. +-....+..+..++.... +...+.+..+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3456788898888875442 23778999999999873 333455555444443221 123344444443
Q ss_pred hhc-CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 268 ENS-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 268 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
... ....++..|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.++++..++|..+.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 332 12235567777777777789999999999999986 468889999999999999999999999999999998764
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.25 E-value=6.2e-05 Score=60.06 Aligned_cols=128 Identities=9% Similarity=0.051 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH
Q 018743 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG-YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146 (351)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (351)
|..+++...+.+..+.|..+|.+..+.+ ..+..+|...... +...++.+.|.++|+...+. ++.+...|...+..+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 4444444444444455555555444322 1222333322222 11123333355555554444 233444444444444
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 147 GNSGNIEKMEKWYNEFNLMGVKAD---IQTLNILTKSYGRAGMYDKMRSVMDFMQK 199 (351)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (351)
...++.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555544432 1111 12444455555555555555555444444
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=4.2e-05 Score=49.85 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (351)
+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++...+..+. +...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3345555666677777777777666543 334455666666666677777777777776655433 34566666667777
Q ss_pred cCCHHHHHHHHHHHHh
Q 018743 289 AGDVEKMGELFLTMKE 304 (351)
Q Consensus 289 ~g~~~~a~~~~~~~~~ 304 (351)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766654
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.23 E-value=9.2e-05 Score=61.29 Aligned_cols=101 Identities=11% Similarity=-0.104 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 018743 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255 (351)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 255 (351)
.-...+...|+++.|...|++....... +...|..+..++...|++++|+..+++++... +.+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 3456677889999999999999887554 67888888999999999999999999999875 557788999999999999
Q ss_pred CHhHHHHHHHHhhhcCCccCHHhH
Q 018743 256 LIMKVDSILRQVENSDVILDTPFF 279 (351)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~~~~~~ 279 (351)
++++|...|++..+.++. +....
T Consensus 85 ~~~eA~~~~~~al~l~P~-~~~~~ 107 (356)
T PLN03088 85 EYQTAKAALEKGASLAPG-DSRFT 107 (356)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHH
Confidence 999999999999987654 44433
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.23 E-value=6.7e-05 Score=59.85 Aligned_cols=143 Identities=11% Similarity=0.069 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 018743 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK-AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250 (351)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 250 (351)
.+|..++....+.+..+.|..+|.+..+.+. .+...|-.....-.. .++.+.|..+|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4677788888888888888899988875432 234444444444233 56677788999888876 46677788888888
Q ss_pred HHhcCCHhHHHHHHHHhhhcCCcc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 251 YSKAGLIMKVDSILRQVENSDVIL---DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319 (351)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 319 (351)
+...|+.+.|..+|++.... +.+ ....|...+..-.+.|+.+.+.++.+++.+. .|+...+..++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 88888888898888888765 221 2347888888888888888888888888875 444344444433
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.22 E-value=8.9e-06 Score=48.90 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=46.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 282 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
+...+.+.|++++|.+.|+.+.+.. +-+...+..+..++...|++++|...++++++..|..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4556778888888888888888763 3356677788888888888888888888888777764
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00022 Score=55.46 Aligned_cols=99 Identities=12% Similarity=0.116 Sum_probs=68.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcCCccCHHhHHH
Q 018743 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDVILDTPFFNC 281 (351)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ 281 (351)
|...|-.|...|...|+.+.|..-|.+..+.. ++++..+..+..++.... ...++..+|+++.+.++. |+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 66777777777777777777777777777653 556666666666555432 345577777777776655 6667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 282 IISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 282 l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 777777777777777777777765
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.18 E-value=0.00029 Score=51.88 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 018743 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250 (351)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 250 (351)
.+..+...+...|++++|...|++.......+. ...+..+...+...|++++|...+.+..+.. +-+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444455555555555555555544322111 2344444455555555555555555554432 2233334444444
Q ss_pred HHhcCCH
Q 018743 251 YSKAGLI 257 (351)
Q Consensus 251 ~~~~g~~ 257 (351)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 4444443
No 166
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.17 E-value=1.7e-05 Score=48.36 Aligned_cols=67 Identities=22% Similarity=0.182 Sum_probs=54.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcc
Q 018743 275 DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG-MTEAAQNLENKMIAMKE 342 (351)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 342 (351)
++..|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.+++.++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888888888999999999999888763 335677888888888888 68999999998888765
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.17 E-value=0.00023 Score=52.48 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (351)
+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+..+. +...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 44444555555666666666665554321111 234555555555556666666655555554333 344444455555
Q ss_pred HhcCCHHH
Q 018743 287 GQAGDVEK 294 (351)
Q Consensus 287 ~~~g~~~~ 294 (351)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 55544333
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.14 E-value=7.1e-05 Score=48.80 Aligned_cols=72 Identities=4% Similarity=0.203 Sum_probs=38.7
Q ss_pred HhcCCHhHHHHHHHHhhhcCC-ccCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018743 252 SKAGLIMKVDSILRQVENSDV-ILDTPFFNCIISAYGQAG--------DVEKMGELFLTMKERHCVPDNITFATMIQAYN 322 (351)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (351)
...+++.....+|+.+.+.++ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.++..+.
T Consensus 36 ~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 36 FENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 333444444444444444444 444444444444433321 23445566667776667777777777766654
Q ss_pred H
Q 018743 323 A 323 (351)
Q Consensus 323 ~ 323 (351)
+
T Consensus 116 k 116 (120)
T PF08579_consen 116 K 116 (120)
T ss_pred H
Confidence 4
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.13 E-value=0.00013 Score=53.54 Aligned_cols=64 Identities=13% Similarity=-0.056 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC--SAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
..|..+...+...|++++|...|++.......+ ...++..+..++...|++++|+..+++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444555555566666666665554432111 1234555555566666666666666655543
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.12 E-value=0.0023 Score=49.88 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 018743 281 CIISAYGQAGDVEKMGELFLTMKER--HCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338 (351)
Q Consensus 281 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (351)
.+.+.|.+.|.+..|+.-++.+++. +.+........++.+|...|..++|......+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4567788899999999999998865 122334566788889999999999988776553
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=7.8e-05 Score=57.57 Aligned_cols=92 Identities=14% Similarity=0.007 Sum_probs=66.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH
Q 018743 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259 (351)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 259 (351)
-+.+.+++.+|+..|.+.++..+. |.+-|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 355667788888888887776443 66777777788888888888887777776653 3345678888888888888888
Q ss_pred HHHHHHHhhhcCCc
Q 018743 260 VDSILRQVENSDVI 273 (351)
Q Consensus 260 a~~~~~~~~~~~~~ 273 (351)
|...|++..+..+.
T Consensus 168 A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 168 AIEAYKKALELDPD 181 (304)
T ss_pred HHHHHHhhhccCCC
Confidence 88888877766443
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.10 E-value=1.2e-05 Score=48.89 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=46.5
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHH
Q 018743 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 71 (351)
.+.|++++|+.+|+.+.+..+. +..++..+..++.+.|++++|.++++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 4578888888888888877655 7778888888888888888888888888774 4554444443
No 173
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.09 E-value=0.00011 Score=48.00 Aligned_cols=68 Identities=18% Similarity=0.381 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 018743 185 GMYDKMRSVMDFMQKRFF-FPTVVTYNIVIETFGKAG--------HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252 (351)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 252 (351)
+++...-.+|+.+.+.++ .|+..+|+.++.+..+.. +.-..+.+|++|...+++|+..+|+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 444444444444433321 22334455555555555666666665555543
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=4e-05 Score=59.13 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=83.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHH
Q 018743 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294 (351)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 294 (351)
-..+.+++++|+..|.+.++.. +-|...|..=..+|.+.|.++.|++-.+..+..++. ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4567889999999999999874 557788888889999999999999999888887665 57788999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 295 MGELFLTMKERHCVPDNITFATMIQ 319 (351)
Q Consensus 295 a~~~~~~~~~~~~~p~~~~~~~l~~ 319 (351)
|++.|++.++ +.|+..+|..=+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 9999999887 5777776654443
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.08 E-value=0.0017 Score=46.74 Aligned_cols=133 Identities=8% Similarity=0.115 Sum_probs=92.5
Q ss_pred CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-CCHHHHH
Q 018743 97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-ADIQTLN 175 (351)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 175 (351)
.|+...-..|..+..+.|+..+|...|++...- -...|......+.++....+++..|...++.+.+.... .++....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 567777777888888888888888888887543 35667777777888888888888888888887664311 1233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKM 232 (351)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 232 (351)
.+.+.+...|.+.+|...|+..... .|+...-......+.+.|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 6778888888888888888888775 344444334445566777666655444433
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00037 Score=54.23 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh---cCCHHHHHHH
Q 018743 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK---FHRFDLIEKI 87 (351)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~ 87 (351)
+....-++.-++.++. |...|-.|...|...|+++.|..-|.+..+..| +|...+..+..++.. .....++..+
T Consensus 139 ~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 139 EALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3333334444444444 666666666666666666666666666665442 333334444443322 2234556666
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 88 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
|+++.... +-|+.+...|...+...|++.+|...|+.|.+.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66666554 345555555566666666666666666666654
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.07 E-value=0.0002 Score=52.61 Aligned_cols=93 Identities=14% Similarity=0.059 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (351)
.|..+...+...|++++|...+++.......+ ...++..+...+...|++++|...++......+. ....+..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 34444445555566666666655554432111 1234555555555666666666666555544322 23334444444
Q ss_pred HH-------hcCCHHHHHHHHHH
Q 018743 286 YG-------QAGDVEKMGELFLT 301 (351)
Q Consensus 286 ~~-------~~g~~~~a~~~~~~ 301 (351)
+. ..|+++.|...+++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHH
Confidence 44 55555544444443
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.04 E-value=0.00056 Score=54.84 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=67.2
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCcc--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-----cCH
Q 018743 209 YNIVIETFGKA-GHIEKMEEYFKKMKHR----GMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-----LDT 276 (351)
Q Consensus 209 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~ 276 (351)
+..+...|... |+++.|++.|++..+. + .+. ...+..+...+.+.|++++|..+|+++...... ++.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 33444555555 6777777777765432 2 111 234556667777777888888777776543221 111
Q ss_pred H-hHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCC--HHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Q 018743 277 P-FFNCIISAYGQAGDVEKMGELFLTMKERH--CVPD--NITFATMIQAYNAL--GMTEAAQNLENKMIA 339 (351)
Q Consensus 277 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~ 339 (351)
. .+-..+-++...||...|.+.+++..... +..+ ......|+.++-.. ..++.|+.-|+.+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 1 22233335556677777777777776442 2222 23445556665432 335566555554433
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.0044 Score=48.30 Aligned_cols=176 Identities=11% Similarity=0.100 Sum_probs=90.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH---HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743 71 LIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY---NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147 (351)
Q Consensus 71 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (351)
....+...|++++|...|+.+...-.. +.... -.++.++.+.+++++|...+++.++..+-.|+.. +...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHHHHHh
Confidence 344456678888888888888775422 22222 3456777788888888888888877654344332 222222222
Q ss_pred c--CC---------------CH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 018743 148 N--SG---------------NI---EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV 207 (351)
Q Consensus 148 ~--~~---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 207 (351)
. .+ |. .+|+..|+.++ .-|-...-..+|...+..+... -..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH----HHH
Confidence 1 10 11 12222333322 2222222233343333333221 000
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHR--GMKPNSITYCSLVSAYSKAGLIMKVDSILRQV 267 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 267 (351)
.--.+.+.|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1113455566667777777666666654 22223445556666666677776666655544
No 180
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.002 Score=52.29 Aligned_cols=258 Identities=12% Similarity=-0.035 Sum_probs=129.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHH
Q 018743 74 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153 (351)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (351)
.+.+..++..|+..+...++.. +.+..-|..-+..+...++++++.--.+.-++.. +.........-+++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhhHHHH
Confidence 3455566666777777666664 3345555555555666666666655554443321 111112222222222333333
Q ss_pred HHHHHHH---------------HHHhcC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH--
Q 018743 154 KMEKWYN---------------EFNLMG-VKADIQTLNIL-TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIE-- 214 (351)
Q Consensus 154 ~a~~~~~---------------~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-- 214 (351)
+|.+.++ ...... -+|.-.++..+ ..++.-.|+++.|..+--.+.+... ...+...++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhccc
Confidence 3332222 111111 11222333322 2345556777777776665555421 112222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHH-------------HHHHHHHHhcCCHhHHHHHHHHhhhcC---CccCHHh
Q 018743 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITY-------------CSLVSAYSKAGLIMKVDSILRQVENSD---VILDTPF 278 (351)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~ 278 (351)
++...++.+.+...|++.+.. .|+...- ..=..-..+.|.+..|.+.+.+.+..+ ..|+...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 333456677777777766654 2332211 111122345677777777777766543 3445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNIT---FATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
|.....+..+.|+..+|+.--++..+. |+.. |..-..++...++|++|.+-+++..+....
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 666666677777777777777766653 3222 222233455667777777777777665443
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.97 E-value=0.0017 Score=56.45 Aligned_cols=63 Identities=10% Similarity=0.043 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235 (351)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (351)
...+..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444555555555555555543 34555555555555556666665555555543
No 182
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=1.4e-05 Score=39.74 Aligned_cols=29 Identities=38% Similarity=0.603 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKERH 306 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 306 (351)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555555443
No 183
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.95 E-value=0.0076 Score=49.77 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHH
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 287 (351)
|...+....+..-.+.|..+|.++.+.+ +.++...+++++..++ .|+...|..+|+.-...-.. ++...+..+..+.
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~fLi 477 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHHHHH
Confidence 4445555555666777777777777766 4566667777776554 46666777777765443222 2233345556666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 288 QAGDVEKMGELFLTMKERHCVPD--NITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 288 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
..++-..|..+|+..++. +..+ ...|..++.--..-|+...+..+-+.|...-|+
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 777777777777755543 2222 456777776666677776666666666554443
No 184
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.94 E-value=1.5e-05 Score=39.60 Aligned_cols=29 Identities=41% Similarity=0.722 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRG 236 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (351)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.93 E-value=0.00054 Score=53.78 Aligned_cols=91 Identities=7% Similarity=-0.087 Sum_probs=39.7
Q ss_pred hcCCHhHHHHHHHHhhhcCCccC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHH
Q 018743 253 KAGLIMKVDSILRQVENSDVILD--TPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPDNITFATMIQAYNALGMTE 328 (351)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~ 328 (351)
+.|++++|...|+.+.+..+... +..+..+..+|...|++++|...|+.+.+.- -+.....+..+...+...|+.+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 34455555555555444322210 1233444445555555555555555554320 0011223333344444555555
Q ss_pred HHHHHHHHHHHhccc
Q 018743 329 AAQNLENKMIAMKEN 343 (351)
Q Consensus 329 ~A~~~~~~~~~~~~~ 343 (351)
+|...++++++..|.
T Consensus 235 ~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 235 KAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHHCcC
Confidence 555555555554443
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.91 E-value=6.4e-05 Score=45.58 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=21.8
Q ss_pred cCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
.|++++|..+|+.+.+..+. +......++.+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444333 344444444444444444444444444443
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.90 E-value=0.0013 Score=52.77 Aligned_cols=123 Identities=14% Similarity=0.106 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHH----cCCCcc--HHHHHHHHHHHHhc-CCHhHHHHHHHHhhhc----CC-ccCHHhHHHHHHHHHh
Q 018743 221 HIEKMEEYFKKMKH----RGMKPN--SITYCSLVSAYSKA-GLIMKVDSILRQVENS----DV-ILDTPFFNCIISAYGQ 288 (351)
Q Consensus 221 ~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~ 288 (351)
++++|+..+++..+ .| .|+ ...+..+...|... |++++|...|++..+. +. ..-..++..+...+.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 55555555555432 22 222 23455666677777 8999999999886542 21 1123456778889999
Q ss_pred cCCHHHHHHHHHHHHhcCCC-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 289 AGDVEKMGELFLTMKERHCV-----PDNI-TFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 289 ~g~~~~a~~~~~~~~~~~~~-----p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
.|++++|.++|++....... ++.. .+...+-++...|+...|.+.+++.....|.-
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999998764322 1222 33344556778899999999999988776643
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.89 E-value=0.0001 Score=44.25 Aligned_cols=58 Identities=14% Similarity=0.035 Sum_probs=37.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
+...+...|++++|...|+.+.+..+. +...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344566667777777777777666544 5666666666777777777777777766653
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.015 Score=50.80 Aligned_cols=280 Identities=14% Similarity=0.102 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 018743 8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87 (351)
Q Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 87 (351)
|+|++|.++|-++.+++ ..+....+.|+|-+..++++.--.......-...|+.+...+.....|++|.++
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665554432 224455566666666666553221100011134566666666666666666666
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 018743 88 LAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV 167 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 167 (351)
+..-.. . ...+.++.+..++++-..+...+ +.+....-.+..++.+.|.-++|.+.+-+..
T Consensus 819 Y~~~~~------~---e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---- 879 (1189)
T KOG2041|consen 819 YSYCGD------T---ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---- 879 (1189)
T ss_pred HHhccc------h---HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc----
Confidence 654321 1 23455555555555544444433 3344445556666667777666666554321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY--------------NIVIETFGKAGHIEKMEEYFKKMK 233 (351)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~ 233 (351)
.| ..-+..|...+++.+|.++-+...- |...+. --.|..+.+.|+.-.|.+++.+|.
T Consensus 880 ~p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 880 LP-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred Cc-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 11 1233445555556555555433211 111110 112334455666666666666664
Q ss_pred H----cCCCccHH----HHHHH-HHHH----------HhcCCHhHHHHHHHHhh--------hcCCc-cCHHhHHHHHHH
Q 018743 234 H----RGMKPNSI----TYCSL-VSAY----------SKAGLIMKVDSILRQVE--------NSDVI-LDTPFFNCIISA 285 (351)
Q Consensus 234 ~----~~~~~~~~----~~~~l-~~~~----------~~~g~~~~a~~~~~~~~--------~~~~~-~~~~~~~~l~~~ 285 (351)
+ ++.+|-.. ...++ +.-+ -..|..++|..+++... +.-.. .....|..|.+-
T Consensus 951 e~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQr 1030 (1189)
T KOG2041|consen 951 EREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQR 1030 (1189)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3 23332211 11111 1111 12355555665444322 10000 122344455555
Q ss_pred HHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHc
Q 018743 286 YGQAGDVEKMGELFLTMKER-HCVPDNITFATMIQAYNAL 324 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~ 324 (351)
-...|.++.|++.--.+.+. .+-|....|..+.-+.+..
T Consensus 1031 ql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~ 1070 (1189)
T KOG2041|consen 1031 QLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAV 1070 (1189)
T ss_pred HHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhh
Confidence 66678888888766555533 3556667777665544443
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.87 E-value=0.0027 Score=43.06 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=53.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--cCHHhHHHHHHHHH
Q 018743 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LDTPFFNCIISAYG 287 (351)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 287 (351)
+..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..++++.....+. .+......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455566777777777777776664443 234555666667777777777777766654222 01122222334566
Q ss_pred hcCCHHHHHHHHHHHH
Q 018743 288 QAGDVEKMGELFLTMK 303 (351)
Q Consensus 288 ~~g~~~~a~~~~~~~~ 303 (351)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777777665544
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.84 E-value=0.0017 Score=52.81 Aligned_cols=137 Identities=12% Similarity=0.031 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-ccHHHHHHHHHHHHhcCCHhHHHHHHHHhh----hcCCc-cCHH
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMK----HRGMK-PNSITYCSLVSAYSKAGLIMKVDSILRQVE----NSDVI-LDTP 277 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~ 277 (351)
.|..+...|.-.|+++.|+..-+.-+ +.|-+ .....+..+..++.-.|+++.|.+.|+... +.|-. ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34455555555667777766544321 22211 122455666777777777777777766532 22111 1223
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----c-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKE----R-HCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
+.-+|...|.-..++++|+.++.+-.. . ...-....+.+|..+|...|..++|+.+.+..++...+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev 348 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEV 348 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 344566666666777777777665321 1 112245567777777777787777777777666554443
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=97.84 E-value=0.0019 Score=45.88 Aligned_cols=87 Identities=13% Similarity=-0.011 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHH
Q 018743 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295 (351)
Q Consensus 216 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 295 (351)
+...|++++|..+|.-+.-.+ +.+..-+..|..++-..+++++|...|......+.. |+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 345677777777777666554 335555666666666667777777777665544332 344444566677777777777
Q ss_pred HHHHHHHHh
Q 018743 296 GELFLTMKE 304 (351)
Q Consensus 296 ~~~~~~~~~ 304 (351)
...|...++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777776665
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.81 E-value=0.012 Score=47.77 Aligned_cols=51 Identities=4% Similarity=-0.057 Sum_probs=25.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 018743 77 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128 (351)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 128 (351)
+.|+.+.|.++-++..... +.-...+...+...+..|+|+.|+++++.-..
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4455555555555544432 22334445555555555555555555555443
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.80 E-value=0.0022 Score=43.46 Aligned_cols=55 Identities=7% Similarity=0.080 Sum_probs=26.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 018743 74 SCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVE 128 (351)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 128 (351)
++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555443322 22333444455555555555555555544
No 195
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.80 E-value=0.0011 Score=49.19 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHhcc-----CChHHHHHHHHHhhccCCCCccHHHHHHHHHHHH
Q 018743 28 SVDVYTALVSAYGQS-----GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT 76 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 76 (351)
+-.+|..++..+.+. |..+=....+..|.+ .|+.-|..+|+.|++.+=
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFP 98 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCC
Confidence 555555555555432 444444555555555 566666666666665543
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.77 E-value=0.00017 Score=44.39 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=30.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 285 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
.|.+.+++++|.++++++...+ +.+...+......+.+.|++++|.+.+++.++..|++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 4455555555555555555441 2234444455555555555555555555555555543
No 197
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.023 Score=49.72 Aligned_cols=183 Identities=13% Similarity=0.106 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 018743 26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL-------IKSCTKFHRFDLIEKILAEMSYLGIEC 98 (351)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 98 (351)
.|.+..|..+.......-.++.|...|-+.....|++.--. ...+ ...-+-.|.+++|++++-+|.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 67899999999988888889999998888776555432111 1111 111223578889988888776543
Q ss_pred CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHhcCCCHHHHHHHHHHHH-----------
Q 018743 99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGNIEKMEKWYNEFN----------- 163 (351)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------- 163 (351)
..+..+.+.|+|-.+.++++.- |...| ..+|+.+...+.....|++|.++|....
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~ 834 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYR 834 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence 2345566667776665555432 11111 2245555555555555555555444321
Q ss_pred ----------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 164 ----------LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKK 231 (351)
Q Consensus 164 ----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 231 (351)
...++.+....-.+..++...|.-++|.+.+-+... | ...+..|...++|.+|.++-+.
T Consensus 835 le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 835 LELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 112344555556666777777777777665543211 1 1345566666777777766554
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.75 E-value=0.0021 Score=47.74 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=39.6
Q ss_pred CCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 018743 204 PTVVTYNIVIETFGKA-----GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253 (351)
Q Consensus 204 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (351)
.+..+|..++..+.+. |..+=....++.|.+.|+.-|..+|+.|+..+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 4778888888888653 6677777778888888888888888888887764
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.73 E-value=0.00033 Score=42.52 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 018743 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DVEKMGELFLTMK 303 (351)
Q Consensus 243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~ 303 (351)
+|..+...+...|++++|+..|++..+.++. +...|..+..++...| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444444444444444444444444333 3344444444444444 3444444444443
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.71 E-value=0.0011 Score=53.87 Aligned_cols=266 Identities=15% Similarity=0.049 Sum_probs=158.2
Q ss_pred HHHhccCChHHHHHHHHHhhccCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHH--HH--cCC-CCCHhHHHHHH
Q 018743 37 SAYGQSGLLDEAFSTINDMKSVSDCKPD----VYTYSILIKSCTKFHRFDLIEKILAEM--SY--LGI-ECSAVTYNTII 107 (351)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~-~~~~~~~~~l~ 107 (351)
.-+++.|+....+.+|+...+. | .-| ...|..|.++|.-.+++++|+++...= .. .|- .-.......|.
T Consensus 25 ERLck~gdcraGv~ff~aA~qv-G-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQV-G-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHh-c-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 3577888888888888888873 3 223 234666677777777888887765321 10 110 01222334455
Q ss_pred HHHhhcCChHHHHHHHHHHH----hcCCCCCCHhHHHHHHHHHhcCCC--------------------HHHHHHHHHHHH
Q 018743 108 DGYGKAKKFEEMESSFSAMV----ESGGCHPDIFTLNSMISAYGNSGN--------------------IEKMEKWYNEFN 163 (351)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 163 (351)
..+.-.|.+++|.-...+-+ +.+.-.....++..+...|...|+ ++.|.++|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 55566677777665433221 111111223345556666655442 334455554322
Q ss_pred h----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 164 L----MGV-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQ----KRFF-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233 (351)
Q Consensus 164 ~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (351)
+ .|- -.....|..|...|.-.|+++.|+...+.-. +-|- ......++.+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 110 0112345556666667789999988765422 2121 1234667888889999999999999998754
Q ss_pred H----cCC-CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh----c-CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 234 H----RGM-KPNSITYCSLVSAYSKAGLIMKVDSILRQVEN----S-DVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 234 ~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 303 (351)
. .|- .....+.-+|..+|.-..++++|+.++.+-.. . +..-....+.+|..+|...|..++|+.+.+.-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3 221 22345667788888888889999988776321 1 111245678889999999999999988877655
Q ss_pred h
Q 018743 304 E 304 (351)
Q Consensus 304 ~ 304 (351)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 3
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.59 E-value=0.014 Score=42.29 Aligned_cols=132 Identities=12% Similarity=0.076 Sum_probs=98.5
Q ss_pred CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHhH
Q 018743 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF---FFPTVVTY 209 (351)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 209 (351)
.|+..--..+..+....|+..+|...|++....-...|......+.++....+++..|...++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 566666677888888999999999999988765556777888888888888999999999998877653 2233 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 268 (351)
-.+.+.+...|+++.|..-|+..... -|+...-......+.+.|+.+++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45678888889999999999888875 5666655555666677787776665444433
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.56 E-value=0.0017 Score=46.37 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCCCHHHH
Q 018743 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK-----ERHCVPDNITF 314 (351)
Q Consensus 243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~ 314 (351)
....++..+...|++++|..+.+.+....+. +...|..++.++...|+..+|.+.|+++. +.|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445555666677777777777777766655 66677777777777777777777777654 34666666543
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.56 E-value=0.031 Score=45.46 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 018743 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254 (351)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (351)
+..+.-+...|+...|.++-.+. -.|+...|...+.+++..++|++-..+... . -++..|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 33344445555555555543333 124566666666666666666655554321 1 1224556666666666
Q ss_pred CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299 (351)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 299 (351)
|+..+|..++..+. +..-+..|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence 66666665555411 123444555666666655443
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.54 E-value=0.00055 Score=42.10 Aligned_cols=55 Identities=9% Similarity=0.027 Sum_probs=30.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 74 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
.+.+.++++.|.++++.+...+ |.+...+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555554 335555555555555555555555555555544
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.024 Score=43.55 Aligned_cols=143 Identities=10% Similarity=0.025 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH----
Q 018743 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV---- 248 (351)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 248 (351)
+.+.++.++.-.+.+.-...++.+..+...+.++...+.+.+.-.+.|+.+.|...|++..+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3456677777788888888889998888777788888999999999999999999999877554344444444333
Q ss_pred -HHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743 249 -SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318 (351)
Q Consensus 249 -~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 318 (351)
..+.-.+++..|...+.++...+.. ++...|.-.-+....|+..+|++..+.|.+. .|.+.+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3455667888888888888877665 6666666666677789999999999999875 45555544433
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.48 E-value=0.0048 Score=48.58 Aligned_cols=97 Identities=11% Similarity=0.069 Sum_probs=60.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--cCHHhHH
Q 018743 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN----SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LDTPFFN 280 (351)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~ 280 (351)
..|...+....+.|++++|...|+.+.+.. |+ ...+..+...|...|++++|...|+.+.+..+. .....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 334444444455677777777777777652 22 245666777777777777777777777654222 1233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 281 CIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 281 ~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
.+...+...|+.++|..+|+.+++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777764
No 207
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.016 Score=45.36 Aligned_cols=155 Identities=11% Similarity=0.028 Sum_probs=93.6
Q ss_pred HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743 36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115 (351)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (351)
.......|++..|..+|....... +-+...-..+..++...|+.+.|..++..+...--.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 445667788888888887777643 334455666777788888888888888876544222222222233455555555
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018743 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV-KADIQTLNILTKSYGRAGMYDKMRSVM 194 (351)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (351)
..+...+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+.+.+. .-|...-..++..+.-.|..+.+...+
T Consensus 219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 55555555555332 44666666777778888888888776666554321 244556667777777666544444333
Q ss_pred H
Q 018743 195 D 195 (351)
Q Consensus 195 ~ 195 (351)
+
T Consensus 296 R 296 (304)
T COG3118 296 R 296 (304)
T ss_pred H
Confidence 3
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.45 E-value=0.00063 Score=42.50 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743 277 PFFNCIISAYGQAGDVEKMGELFLTMKER--HCV---PD-NITFATMIQAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
.+++.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|++++++.++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45677777888888888888888876632 011 22 446777778888888888888888887764
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.44 E-value=0.021 Score=40.70 Aligned_cols=85 Identities=9% Similarity=0.005 Sum_probs=38.7
Q ss_pred hcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332 (351)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 332 (351)
..|++++|..+|+-+.-.++. +...+..|..++-..+++++|+..|......+. -|+..+.....++...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 445555555555544444333 444444444444445555555555544433321 123333334444455555555555
Q ss_pred HHHHHHH
Q 018743 333 LENKMIA 339 (351)
Q Consensus 333 ~~~~~~~ 339 (351)
.|+..+.
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5444443
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.44 E-value=0.049 Score=44.90 Aligned_cols=166 Identities=14% Similarity=0.088 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 018743 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMG---VKADIQTLNILTKSYGR---AGMYDKMRSVMDFMQKRFFFPTVVTYNI 211 (351)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 211 (351)
+...++-+|....+++..+++.+.+.... +..+..+-...+-++.+ .|+.++|..++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455667888899999999999987642 12233333345556666 7899999999988666666778888888
Q ss_pred HHHHHHh---------cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh----HHHHHHHH----hhhcC---
Q 018743 212 VIETFGK---------AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM----KVDSILRQ----VENSD--- 271 (351)
Q Consensus 212 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~----~~~~~--- 271 (351)
+.+.|-. ....+.|+..|.+.-+. .|+..+-..++..+...|... +..++--. +.+.+
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 8877642 12366777777765554 355444333444444444322 22333311 11222
Q ss_pred CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
...+--.+..++.+..-.|+.++|.+..++|.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1223344556777777788888888888888765
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.43 E-value=0.017 Score=41.18 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh-----hcCCccCHHhH
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE-----NSDVILDTPFF 279 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~ 279 (351)
....++..+...|++++|..+...+.... |.+...+..++.++...|+...|.++|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45566777778888999999888888875 6678888888999999999998888888764 46777776553
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.42 E-value=0.032 Score=42.34 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=20.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHcCCHH
Q 018743 282 IISAYGQAGDVEKMGELFLTMKERHCVPDN----ITFATMIQAYNALGMTE 328 (351)
Q Consensus 282 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~ 328 (351)
+...|.+.|.+..|..-++.+++. -|+. .....++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 344455555555555555555543 1221 23344445555555544
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.41 E-value=0.033 Score=42.29 Aligned_cols=187 Identities=11% Similarity=0.048 Sum_probs=106.3
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179 (351)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 179 (351)
...-.....+...|++.+|.+.|+.+.......+ -......++.++.+.|+++.|...++++.+.-......-+...+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 3344455667788999999999999987632222 223456677888899999999999999876431111122222333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 018743 180 SYGRAGMYDKMRSVMDFMQKRFF---FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256 (351)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 256 (351)
+.+......... ...... .--...+..++.-|=......+|...+..+... =...-..+...|.+.|.
T Consensus 86 g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 86 GLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-
T ss_pred HHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccc
Confidence 222211111111 000000 001345666666666677777777766665542 11122346778999999
Q ss_pred HhHHHHHHHHhhhcCCc--cCHHhHHHHHHHHHhcCCHHHHH
Q 018743 257 IMKVDSILRQVENSDVI--LDTPFFNCIISAYGQAGDVEKMG 296 (351)
Q Consensus 257 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~ 296 (351)
+..|..-++.+.+.-+. ........++.++.+.|..+.+.
T Consensus 157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999998876332 11234567788888888887544
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.39 E-value=0.078 Score=46.25 Aligned_cols=90 Identities=14% Similarity=0.055 Sum_probs=54.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH--------
Q 018743 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT-------- 276 (351)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------- 276 (351)
+..+...+...+.+...+.-|.++|..|-.. .++++.....+++++|..+-+...+.- |+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~--~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFK--DDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcccc--ccccchHHHHh
Confidence 3444444455555566667777777665432 345666777788888888777655431 221
Q ss_pred ---HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 277 ---PFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 277 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
.-|...-.+|.++|+..+|.++++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 12344445677777777777777776543
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.35 E-value=0.012 Score=40.46 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=43.9
Q ss_pred hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHc
Q 018743 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-RHCVPDNITFATMIQAYNAL 324 (351)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~ 324 (351)
.....|+..+..+++.+|+..|++..|+++.+...+ .+++.+..+|..|++-....
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 345678888899999999999999999999998764 46777788888888754443
No 216
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.33 E-value=0.0063 Score=41.75 Aligned_cols=53 Identities=4% Similarity=-0.145 Sum_probs=38.4
Q ss_pred CCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743 95 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147 (351)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (351)
...|+..+..+++.+|+..+++..|+++++.+.+..+++.+..+|..|+.-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34577777777777777777777777777777777776666777777775443
No 217
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.20 E-value=0.087 Score=44.55 Aligned_cols=109 Identities=12% Similarity=0.084 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHH
Q 018743 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMI 318 (351)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 318 (351)
..+-..+..++.+.|+.++|.+.++++.+..+. -+..+...|+.++...+.+.++..++.+..+...+.+ ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344456777888999999999999998865433 2445677899999999999999999998765433322 33565544
Q ss_pred HHHHHcCC---------------HHHHHHHHHHHHHhcccCCCCcc
Q 018743 319 QAYNALGM---------------TEAAQNLENKMIAMKENSGKKLI 349 (351)
Q Consensus 319 ~~~~~~g~---------------~~~A~~~~~~~~~~~~~~~~~~~ 349 (351)
-.+...++ -..|.+.+.++.+.+|..++-++
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 33333332 13467888999999988776543
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.18 E-value=0.1 Score=43.14 Aligned_cols=167 Identities=15% Similarity=0.072 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CCCHhHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018743 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGC--HPDIFTLNSMISAYGN---SGNIEKMEKWYNEFNLMGVKADIQTLNI 176 (351)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 176 (351)
+...++-+|-...+++..+++++.+...... ......-.....++.+ .|+.++|++++..+....-.+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3344555666677777777777776443211 1112222234445555 6777777777776544444666667776
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HH---HHHHHH---HHH-HHcCC--
Q 018743 177 LTKSYGRA---------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-IE---KMEEYF---KKM-KHRGM-- 237 (351)
Q Consensus 177 l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~~-~~~~~-- 237 (351)
+.+.|-.. ...++|...|.+.-+. .|+..+--.++..+...|. .+ +..++- ..+ .+.|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 66665321 1244555555544332 1332221122222222332 11 222222 111 12221
Q ss_pred -CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743 238 -KPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270 (351)
Q Consensus 238 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 270 (351)
..+--.+..++.++.-.|+.++|.+..+.+.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 123334456666666677777777777776655
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.15 E-value=0.1 Score=42.68 Aligned_cols=285 Identities=10% Similarity=0.034 Sum_probs=176.2
Q ss_pred cCChHHHHHHHHHhhccCCCCccHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHhhcCChH
Q 018743 42 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS--CTKFHRFDLIEKILAEMSYLGIECSAV--TYNTIIDGYGKAKKFE 117 (351)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 117 (351)
.|+-..|.++-.+..+. +..|....-.++.+ ..-.|+++.|.+-|+.|... |... -...|.-.-.+.|..+
T Consensus 97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 45666666655554421 23444445555544 44578999999999999753 2221 1223333344678888
Q ss_pred HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CCCCHH--HHHHHHHHHH---hcCCHHHHH
Q 018743 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQ--TLNILTKSYG---RAGMYDKMR 191 (351)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~ 191 (351)
.|..+-+...+.. +.-...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-. -..+...|.
T Consensus 172 aAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 8888888886653 4445678888999999999999999998765433 233322 1122222211 112344444
Q ss_pred HHHHHHHHcCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh--
Q 018743 192 SVMDFMQKRFFFPTVVTY-NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE-- 268 (351)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-- 268 (351)
..-.+..+ +.||...- -....++.+.|+..++-.+++.+-+.. |.+..+...+ ..+.|+ .+..-+++..
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC--cHHHHHHHHHHH
Confidence 44333333 34554322 233577889999999999999998874 4444333222 334444 3444444332
Q ss_pred -hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcccC
Q 018743 269 -NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA-LGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 269 -~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~ 344 (351)
...+. +......+.++-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++..++-+.++...+|
T Consensus 322 ~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 322 ESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 22222 556666777888889999888877777665 47788888888877554 499999999999888754443
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.10 E-value=0.0022 Score=39.97 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=13.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhh
Q 018743 31 VYTALVSAYGQSGLLDEAFSTINDMK 56 (351)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 56 (351)
+++.+...|...|++++|++.|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555555444
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.09 E-value=0.12 Score=44.78 Aligned_cols=166 Identities=18% Similarity=0.130 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-----HhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHH
Q 018743 174 LNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTV-----VTYNIVIETFGK----AGHIEKMEEYFKKMKHRGMKPNSIT 243 (351)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (351)
+..+++...=.|+-+.+++.+....+.+ +.-.. ..|...+..++. ....+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4456666677789999998888765532 22111 233444443333 45688899999999886 566555
Q ss_pred HH-HHHHHHHhcCCHhHHHHHHHHhhhcC---CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 244 YC-SLVSAYSKAGLIMKVDSILRQVENSD---VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319 (351)
Q Consensus 244 ~~-~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 319 (351)
|. .-.+.+...|++++|.+.|++..... .......+-.+..++.-.++|++|.+.|..+.+.. ..+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 43 34455667899999999999765321 12234456677778889999999999999999863 334455554443
Q ss_pred -HHHHcCCH-------HHHHHHHHHHHHhcc
Q 018743 320 -AYNALGMT-------EAAQNLENKMIAMKE 342 (351)
Q Consensus 320 -~~~~~g~~-------~~A~~~~~~~~~~~~ 342 (351)
++...|+. ++|.+++.++.....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 35567887 888889888866544
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.031 Score=45.70 Aligned_cols=125 Identities=9% Similarity=-0.012 Sum_probs=73.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-----CC---------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743 178 TKSYGRAGMYDKMRSVMDFMQKRF-----FF---------PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243 (351)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (351)
...+.+.|++..|...|++....- .. .-..++..+..++.+.+++..|+..-...+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 345667777777777776644320 00 112345556666666777777777666666654 556666
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM-GELFLTMKE 304 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 304 (351)
.-.=..++...|+++.|+..|+.+.+..+. |..+-+.++.+-.+..+..+. .++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666666677777777777777666554 555555555554444443332 556666553
No 223
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.04 E-value=0.15 Score=42.59 Aligned_cols=50 Identities=10% Similarity=-0.015 Sum_probs=38.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (351)
+...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++.++
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4556777777554444443 6889999999999999999999999998765
No 224
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.02 E-value=0.07 Score=46.51 Aligned_cols=214 Identities=14% Similarity=0.093 Sum_probs=114.7
Q ss_pred HHHHHhccCCh--HHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhHHHH-----H
Q 018743 35 LVSAYGQSGLL--DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNT-----I 106 (351)
Q Consensus 35 l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~-----l 106 (351)
.=.+|.+..+. -+.+.-++++.+ +|..|+... +...++-.|++.+|-++|.+- |... -...|+- +
T Consensus 604 ARkAY~rVRdl~~L~li~EL~~~k~-rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~ 676 (1081)
T KOG1538|consen 604 ARKAYIRVRDLRYLELISELEERKK-RGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDY 676 (1081)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-cCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHH
Confidence 33445444432 234444556665 566677543 344566778888888887653 2210 0111111 1
Q ss_pred HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH------HHhcCC---CCCHHHHHHH
Q 018743 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE------FNLMGV---KADIQTLNIL 177 (351)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~---~~~~~~~~~l 177 (351)
..-+...|..++-..+.++-.+ ...+..--.+....+...|+.++|..+.-+ +.+.+. ..+..+...+
T Consensus 677 aQE~~~~g~~~eKKmL~RKRA~---WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~ 753 (1081)
T KOG1538|consen 677 AQEFLGSGDPKEKKMLIRKRAD---WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLC 753 (1081)
T ss_pred HHHHhhcCChHHHHHHHHHHHH---HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHH
Confidence 2223334444333333332111 111111122344556677887777765422 222111 2334555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH-----------HHHH
Q 018743 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI-----------TYCS 246 (351)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~ 246 (351)
...+.+...+..|.++|..|-+. ..++......++|++|..+-+...+. .|+.. -|..
T Consensus 754 a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeE 822 (1081)
T KOG1538|consen 754 ATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEE 822 (1081)
T ss_pred HHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHH
Confidence 66667777888888888887542 35677888899999999988876553 33321 1233
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhh
Q 018743 247 LVSAYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 247 l~~~~~~~g~~~~a~~~~~~~~~ 269 (351)
.-++|.+.|+-.+|..+++++..
T Consensus 823 AqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 823 AQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHhcchHHHHHHHHHhhh
Confidence 34456666777777777766554
No 225
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.1 Score=40.26 Aligned_cols=131 Identities=11% Similarity=-0.009 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH-----HH
Q 018743 140 NSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV-----IE 214 (351)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~ 214 (351)
+.++..+.-.|.+.-....+++.++...+.++.....|++.-.+.|+.+.|...|+...+..-..+..+.+.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3444455555666666666666666554455556666666666666666666666655543322232222222 22
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD 271 (351)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 271 (351)
.+.-.+++..|...+.++...+ +-|+...|.-.-+..-.|+...|.+.++.+.+..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3344556666666666655543 3344444433333444566666666666666553
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.00 E-value=0.15 Score=44.27 Aligned_cols=153 Identities=12% Similarity=0.031 Sum_probs=70.5
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHh-----HHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHH
Q 018743 112 KAKKFEEMESSFSAMVESGGCHPDIF-----TLNSMISAYGN----SGNIEKMEKWYNEFNLMGVKADIQTLNI-LTKSY 181 (351)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 181 (351)
-.|+-+.+++.+.+..+..++.-... .|...+..++. ..+.+.|.+++..+.+. -|+...|.. -.+.+
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLE 277 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 34666666666666554433322211 12222222222 33455566666666543 244333322 23444
Q ss_pred HhcCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCH
Q 018743 182 GRAGMYDKMRSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKAGLI 257 (351)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 257 (351)
...|+.++|.+.|+...... .......+--+.-.+....++++|.+.|..+.+.+ ..+..+|..+..+ +...|+.
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccc
Confidence 55566666666666543210 11112233334445555666666666666666543 3333344333332 2234444
Q ss_pred -------hHHHHHHHHh
Q 018743 258 -------MKVDSILRQV 267 (351)
Q Consensus 258 -------~~a~~~~~~~ 267 (351)
++|..+|.++
T Consensus 357 ~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 357 EEAKEHKKEAEELFRKV 373 (468)
T ss_pred hhhhhhHHHHHHHHHHH
Confidence 5555555554
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.92 E-value=0.034 Score=46.56 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=43.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS----ITYCSLVSAYSKAGLIMKVDSILRQVENS 270 (351)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 270 (351)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566667777777777777777777776665 3332 24667777777777777777777776654
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.92 E-value=0.027 Score=38.17 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=65.0
Q ss_pred HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHhh
Q 018743 36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVT---YNTIIDGYGK 112 (351)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~ 112 (351)
.-++...|+++.|++.|.+....- +.....||.-.+++.-+|+.++|++-+++..+..-+.+... |..-...|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 446678888888888888877632 44566788888888888888888888888776542333322 3333445667
Q ss_pred cCChHHHHHHHHHHHhcC
Q 018743 113 AKKFEEMESSFSAMVESG 130 (351)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~ 130 (351)
.|+.+.|..-|+...+.+
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 788888888888776553
No 229
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.3 Score=43.54 Aligned_cols=83 Identities=10% Similarity=0.119 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc
Q 018743 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289 (351)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (351)
+-.+.-+...|+-.+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+... .+.-|..+..+|.+.
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQ 757 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhc
Confidence 333444455555555555544432 3455555555555555565555444443322 122344455556666
Q ss_pred CCHHHHHHHHHHH
Q 018743 290 GDVEKMGELFLTM 302 (351)
Q Consensus 290 g~~~~a~~~~~~~ 302 (351)
|+.++|.+++.+.
T Consensus 758 ~n~~EA~KYiprv 770 (829)
T KOG2280|consen 758 GNKDEAKKYIPRV 770 (829)
T ss_pred ccHHHHhhhhhcc
Confidence 6666666555544
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.023 Score=43.94 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhccCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHhHHHH
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC-KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI--ECSAVTYNT 105 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 105 (351)
...|+.-+.. .+.|++..|...|....+...- .-....+--|..++...|+++.|..+|..+.+.-. +.-+..+.-
T Consensus 142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4477766664 4677899999999988864211 11133455688999999999999999999877521 223567888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhc
Q 018743 106 IIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
|..+..+.|+.++|..+|+++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888999999999999999999887
No 231
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.77 E-value=0.23 Score=40.57 Aligned_cols=106 Identities=12% Similarity=0.137 Sum_probs=81.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHH
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 287 (351)
+.+..+.-+...|+...|.++-.+.. .|+...|..-+.+++..++|++..++... .+ ++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-kK-----sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-KK-----SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CC-----CCCChHHHHHHHH
Confidence 45566777788899888888766542 57889999999999999999988876543 11 3456889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 018743 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333 (351)
Q Consensus 288 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 333 (351)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 999999999888762 2 24556678888888888544
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.76 E-value=0.21 Score=42.77 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=31.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 018743 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296 (351)
Q Consensus 217 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 296 (351)
.+.|+++.|.++.++ .++...|..|.......|+++-|+..|++..+ |..|+-.|.-.|+.+.-.
T Consensus 329 l~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 344555555444322 22344555555555555555555555544332 223333444445544444
Q ss_pred HHHHHHHh
Q 018743 297 ELFLTMKE 304 (351)
Q Consensus 297 ~~~~~~~~ 304 (351)
++.+....
T Consensus 394 kl~~~a~~ 401 (443)
T PF04053_consen 394 KLAKIAEE 401 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.092 Score=41.99 Aligned_cols=154 Identities=8% Similarity=0.021 Sum_probs=105.6
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH----HHHHHHHHhcCCH
Q 018743 147 GNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY----NIVIETFGKAGHI 222 (351)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~ 222 (351)
-..|++.+|-..++++.+. .|.|...+...=.++.-.|+.+.-...++++... ..||...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467777777788888764 4667777777778888889988888888887654 22333333 2334455678899
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC---CccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD---VILDTPFFNCIISAYGQAGDVEKMGELF 299 (351)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 299 (351)
++|.+.-++..+.+ +.|.-.-..+...+.-.|++.++.++..+-...- .-.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999888888765 5566677777788888899999888877644321 1111122334444566778899999999
Q ss_pred HHHH
Q 018743 300 LTMK 303 (351)
Q Consensus 300 ~~~~ 303 (351)
++=+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8754
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.75 E-value=0.1 Score=36.36 Aligned_cols=84 Identities=12% Similarity=0.017 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKP-DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 107 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (351)
...+-.-.....+.|++++|.+.|+.+.......| ...+--.++.++.+.+++++|...+++.++......-.-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 33333445555677788888888887776543322 23345556677777888888888888777765433334454444
Q ss_pred HHHhh
Q 018743 108 DGYGK 112 (351)
Q Consensus 108 ~~~~~ 112 (351)
.+++.
T Consensus 90 ~gL~~ 94 (142)
T PF13512_consen 90 RGLSY 94 (142)
T ss_pred HHHHH
Confidence 44443
No 235
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.75 E-value=0.092 Score=35.77 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743 241 SITYCSLVSAYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 268 (351)
+...-.+..+|.+.|+..++..++.++-
T Consensus 120 p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 120 PEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3333333333444444333333333333
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.74 E-value=0.071 Score=44.77 Aligned_cols=64 Identities=8% Similarity=-0.125 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---hHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS-A---VTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
+...++.+..++...|++++|+..|++..+.. |+ . .+|..+..+|...|+.++|+..+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35566666666777777777777777666653 23 2 24666667777777777777777766653
No 237
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.73 E-value=0.0041 Score=33.65 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 314 FATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
+..+..+|.+.|++++|.++++++++..|++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3444444555555555555555555544443
No 238
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.70 E-value=0.0045 Score=31.72 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 313 TFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
+|..|...|.+.|++++|++++++.+....++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 36677788888888888888888866554443
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=96.68 E-value=0.14 Score=43.23 Aligned_cols=110 Identities=8% Similarity=-0.011 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLT 301 (351)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 301 (351)
..+|.++.++..+.+ +-|......+..+....++++.|...|++....++. ....|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345555555566654 456666666666666666677777777776666544 444555555555666777777777776
Q ss_pred HHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743 302 MKERHCVPDN---ITFATMIQAYNALGMTEAAQNLENK 336 (351)
Q Consensus 302 ~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (351)
..+. .|.. ......+..|+..+ .+.|++++-+
T Consensus 398 alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 398 SLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred Hhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 5543 2322 12222233444333 4556555543
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=96.68 E-value=0.32 Score=41.15 Aligned_cols=81 Identities=7% Similarity=-0.145 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 018743 81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160 (351)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (351)
..+|.++-+...+.+ +.|+.+...+..+..-.++++.|..+|++....+ |....+|......+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555555554 4455555555555555555666666666655442 2233344444444444566666666665
Q ss_pred HHHh
Q 018743 161 EFNL 164 (351)
Q Consensus 161 ~~~~ 164 (351)
+..+
T Consensus 397 ~alr 400 (458)
T PRK11906 397 KSLQ 400 (458)
T ss_pred HHhc
Confidence 5443
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.67 E-value=0.21 Score=42.81 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=33.9
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 018743 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225 (351)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 225 (351)
..+.|+++.|.++.++ ..+...|..|.....+.|+.+-|++.|.+..+ |..++-.|...|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 3345555555444322 22444555555555555555555555544322 23344444445555444
Q ss_pred HHHHHHHHHc
Q 018743 226 EEYFKKMKHR 235 (351)
Q Consensus 226 ~~~~~~~~~~ 235 (351)
.++.+.....
T Consensus 393 ~kl~~~a~~~ 402 (443)
T PF04053_consen 393 SKLAKIAEER 402 (443)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 4444444433
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.11 Score=42.67 Aligned_cols=127 Identities=12% Similarity=0.041 Sum_probs=94.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCC---------ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHh
Q 018743 213 IETFGKAGHIEKMEEYFKKMKHR-----GMK---------PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF 278 (351)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 278 (351)
...+.+.|++..|...|++.+.. +.+ .-..++..+..++.+.+++..|+.........+.. |...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhH
Confidence 45677889999998888875532 111 12245677888999999999999999999988765 8888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HcCC-HHHHHHHHHHHHHhcc
Q 018743 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN-ALGM-TEAAQNLENKMIAMKE 342 (351)
Q Consensus 279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~-~~~A~~~~~~~~~~~~ 342 (351)
.-.=.+++...|+++.|+..|+++.+. .|+......=+..|. +..+ .+...++|..|...-.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 888889999999999999999999985 666665554444443 3333 3445888888876544
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.069 Score=41.46 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=38.2
Q ss_pred cCCHhHHHHHHHHhhhcCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHHcCCHHH
Q 018743 254 AGLIMKVDSILRQVENSDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-CVP-DNITFATMIQAYNALGMTEA 329 (351)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~ 329 (351)
.|++..|..-|....+..+. -....+--|..++...|++++|..+|..+.+.- -.| -+..+.-|.....+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 34455555544444433211 011223334445555555555555555444320 001 12334444444445555555
Q ss_pred HHHHHHHHHHhccc
Q 018743 330 AQNLENKMIAMKEN 343 (351)
Q Consensus 330 A~~~~~~~~~~~~~ 343 (351)
|...|+++++.-|.
T Consensus 234 A~atl~qv~k~YP~ 247 (262)
T COG1729 234 ACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHCCC
Confidence 55555555544443
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.60 E-value=0.094 Score=35.65 Aligned_cols=93 Identities=13% Similarity=0.013 Sum_probs=61.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHH---hHHHHHHHHHhcC
Q 018743 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAG 290 (351)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g 290 (351)
.+....|+.+.|++.|.+.+..- +-....|+.-.+++.-.|+.++|+.-+++..+..-.-+.. .|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 35567788888888888777652 4566778888888888888888888777766542211222 2333334566677
Q ss_pred CHHHHHHHHHHHHhcCC
Q 018743 291 DVEKMGELFLTMKERHC 307 (351)
Q Consensus 291 ~~~~a~~~~~~~~~~~~ 307 (351)
+-+.|..=|+..-+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77778777777777653
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.15 Score=40.91 Aligned_cols=152 Identities=12% Similarity=0.057 Sum_probs=89.4
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHH
Q 018743 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM---GVKADIQTLNILTKSYGRAGMYD 188 (351)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 188 (351)
..|++.+|-..++++++. .|.|..++...-.+|.-.|+...-...++++... ++|.....-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456777777777777766 4667777777777777777777777777776543 22222333344444556777788
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHhcCCHhHHHHHHH
Q 018743 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG---MKPNSITYCSLVSAYSKAGLIMKVDSILR 265 (351)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 265 (351)
+|++.-++..+.+.. |.-.-.+....+...|+..++.++..+-...- .-.-..-|-...-.+...+.++.|+.+|+
T Consensus 193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 887777776665332 44444555666666777777777665532210 00011122223333445577777777776
Q ss_pred H
Q 018743 266 Q 266 (351)
Q Consensus 266 ~ 266 (351)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
No 246
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.50 E-value=0.26 Score=38.00 Aligned_cols=223 Identities=12% Similarity=-0.035 Sum_probs=111.8
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 018743 79 HRFDLIEKILAEMSYLGIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 157 (351)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 157 (351)
+....+...+.......... ....+......+...+.+..+...+...............+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555554443211 24555566666666777777777666664310123344455555566666666666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 158 WYNEFNLMGVKADIQTLNILTK-SYGRAGMYDKMRSVMDFMQKRFF--FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (351)
.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666665533222 111222222 55666666666666666543211 01222233333334455566666666666555
Q ss_pred cCCCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 235 RGMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 235 ~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
.. +. ....+..+...+...++++.+...+......... ....+..+...+...+..+.+...+.....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 22 2445555555555555666666666655544322 122333333333344455566555555554
No 247
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.47 E-value=0.43 Score=40.05 Aligned_cols=92 Identities=9% Similarity=0.067 Sum_probs=71.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 15 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94 (351)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 94 (351)
++=+++.+ + +.|..+|-.|+.-+..+|..++..+++++|... .+--..+|..-+++-...+++..++.+|.+....
T Consensus 30 rLRerIkd-N-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKD-N-PTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhc-C-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 45555544 3 348999999999999999999999999999863 3444567888888877889999999999999877
Q ss_pred CCCCCHhHHHHHHHHHhh
Q 018743 95 GIECSAVTYNTIIDGYGK 112 (351)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~ 112 (351)
.+ +...|...+.--.+
T Consensus 106 ~l--~ldLW~lYl~YIRr 121 (660)
T COG5107 106 SL--NLDLWMLYLEYIRR 121 (660)
T ss_pred hc--cHhHHHHHHHHHHh
Confidence 44 56677776664444
No 248
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.40 E-value=0.4 Score=39.01 Aligned_cols=229 Identities=14% Similarity=0.079 Sum_probs=134.9
Q ss_pred ccCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCChHHHHHHHH----HhhccCCCCccHHHHHHHHHHHHhc
Q 018743 5 GKCKQPEQASLLFEVMLSD--GLKPSVDVYTALVSAYGQSGLLDEAFSTIN----DMKSVSDCKPDVYTYSILIKSCTKF 78 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~ 78 (351)
....+.++|+..|...+.+ +...-..++..+..+.++.|.+++++..-- ...+......--..|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888776654 111234567777888888888887664322 2221110011123455666666666
Q ss_pred CCHHHHHHHHHHHHHc-CCCC---CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC----CHhHHHHHHHHHhcCC
Q 018743 79 HRFDLIEKILAEMSYL-GIEC---SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP----DIFTLNSMISAYGNSG 150 (351)
Q Consensus 79 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~ 150 (351)
-++.+++.+-..-... |..| --.....+..++.-.+.++++++.|+...+...-.. ...++..+...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 6677776665554332 1111 112334566777778889999999988766432222 2346888888899999
Q ss_pred CHHHHHHHHHHHHh----cCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-CHHhHHHHHHHH
Q 018743 151 NIEKMEKWYNEFNL----MGVKADIQTL-----NILTKSYGRAGMYDKMRSVMDFMQK----RFFFP-TVVTYNIVIETF 216 (351)
Q Consensus 151 ~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~ 216 (351)
|+++|.-+.....+ .++..=..-| -.+.-++...|....|.+.-++..+ .|-.+ .......+...|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99988777665533 2221111112 2344456677777777776665433 33221 233445566778
Q ss_pred HhcCCHHHHHHHHHHHH
Q 018743 217 GKAGHIEKMEEYFKKMK 233 (351)
Q Consensus 217 ~~~~~~~~a~~~~~~~~ 233 (351)
...|+.+.|+.-|++..
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 88899988888777643
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.37 E-value=0.2 Score=35.01 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=44.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743 213 IETFGKAGHIEKMEEYFKKMKHRGM--KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288 (351)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (351)
.....+.|++++|.+.|+.+...-. +-....-..++.++.+.+++++|...+++.++..+...-.-|-..+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3444566777777777777765410 113345556677777777777777777777766554333344444555443
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.30 E-value=0.019 Score=31.02 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 281 CIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 281 ~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
.+...|...|++++|+++|+++++
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.29 E-value=0.082 Score=41.68 Aligned_cols=75 Identities=19% Similarity=0.126 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHHHHHH
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE-----RHCVPDNITFATMI 318 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l~ 318 (351)
+..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 344444444444555555555554444443 444455555555555555555555444432 34444444444333
Q ss_pred H
Q 018743 319 Q 319 (351)
Q Consensus 319 ~ 319 (351)
.
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
No 252
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.24 E-value=0.02 Score=28.66 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 312 ITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
..|..+...+...|++++|++.+++.++..|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35666777788888888888888888877765
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.24 E-value=0.45 Score=38.71 Aligned_cols=230 Identities=12% Similarity=0.045 Sum_probs=140.2
Q ss_pred HhccCChHHHHHHHHHhhccCC-CCccHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHcC-CCCCHhHHHHHHHHHhh
Q 018743 39 YGQSGLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKIL----AEMSYLG-IECSAVTYNTIIDGYGK 112 (351)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~ 112 (351)
+....+.++|+..+.+...... ...--.+|..+..+.++.|.+++++..- +-..+.. -..--..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777766654210 0111234666667777777777665432 1111111 01123456677777777
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCH---hHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhc
Q 018743 113 AKKFEEMESSFSAMVESGGCHPDI---FTLNSMISAYGNSGNIEKMEKWYNEFNLMG-----VKADIQTLNILTKSYGRA 184 (351)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 184 (351)
.-++.+++.+-..-....|..|.. .....+..++...+.++++++.|+...+.- ......++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 788888888877766655554421 233446677778888999999998875421 112345788899999999
Q ss_pred CCHHHHHHHHHHHHH----cCCCCCHHhHH-----HHHHHHHhcCCHHHHHHHHHHHH----HcCCCc-cHHHHHHHHHH
Q 018743 185 GMYDKMRSVMDFMQK----RFFFPTVVTYN-----IVIETFGKAGHIEKMEEYFKKMK----HRGMKP-NSITYCSLVSA 250 (351)
Q Consensus 185 ~~~~~a~~~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~ 250 (351)
.++++|.-......+ .++..-..-|. .+..++...|+...|.+.-++.. ..|-.+ .......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999998877665433 22221111222 34456667787777777666643 334232 22345667788
Q ss_pred HHhcCCHhHHHHHHHHhh
Q 018743 251 YSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~ 268 (351)
|...|+.+.|+.-|+...
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 889999999888887643
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.38 Score=36.84 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743 279 FNCIISAYGQAGDVEKMGELFLTMKERH---CVPDNITFATMIQAYNALGMTEAAQNLE 334 (351)
Q Consensus 279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (351)
|-..|-.+....++..|.+.++.-.+.+ -+-+..+...|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3444445555566666666666643321 112344555666554 445555554443
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.20 E-value=0.02 Score=28.71 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 312 ITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
.+|..+..+|...|++++|+..++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777788888888888888888777764
No 256
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.17 E-value=0.068 Score=41.61 Aligned_cols=87 Identities=16% Similarity=0.287 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHhcc-----CChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhc----------------CCHHHHHH
Q 018743 28 SVDVYTALVSAYGQS-----GLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF----------------HRFDLIEK 86 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~ 86 (351)
+-.+|...+..+... +.++-....++.|.+ .|+.-|..+|+.|++.+-+- .+-+-+.+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 455555555555432 344445555566666 66666777777766654331 12234566
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743 87 ILAEMSYLGIECSAVTYNTIIDGYGKAKK 115 (351)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (351)
++++|...|+.||-.+-..|+.++.+.+.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 66666666666666666666666655443
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.92 Score=41.24 Aligned_cols=179 Identities=11% Similarity=0.142 Sum_probs=109.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 018743 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECS--AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145 (351)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (351)
...-+..+.+..-++.|..+-+. .+..++ ..........+.+.|++++|...|-+.+.. +.|+ .++.-
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~k 406 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHH
Confidence 34445555666666666655443 222222 123333445566789999998888777654 3443 24555
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 018743 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225 (351)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 225 (351)
|...........+++.+.+.|+. +...-..|+.+|.+.++.++..+..+...+....-| ....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd---~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFD---VETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeee---HHHHHHHHHHhChHHHH
Confidence 56666777778888888888854 455567788999999998888777765542111112 34556666777777777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 268 (351)
..+-.+... +......++ -..+++++|.+.+..+.
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 666554332 233333333 34678888888887654
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.14 E-value=0.81 Score=39.85 Aligned_cols=311 Identities=10% Similarity=0.106 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHH-hcCCHHHHHHHH
Q 018743 11 EQASLLFEVMLSDGLKPSV-DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT-KFHRFDLIEKIL 88 (351)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~ 88 (351)
+.+..+++.++.. -|.. --|......=.+.|..+.+..+|++-.. +++.+...|......+. ..|+.+.....|
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4455566666644 3333 3455566666677777788888887774 55666666665554433 456677777777
Q ss_pred HHHHHc-CCC-CCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc-----CCCHHHHHHHHHH
Q 018743 89 AEMSYL-GIE-CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-----SGNIEKMEKWYNE 161 (351)
Q Consensus 89 ~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~ 161 (351)
+..... |.. .....|...+..-...+++.....+++++++.. ...=...|.......-. ....+++.++-..
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 776553 211 234456666666667777777777777776542 00000111111111111 1122332222221
Q ss_pred HHh--------------------cCCCCCH---HHHHHHHH-------HHHhcCCHHHHHHHHHHHHHcC-------CCC
Q 018743 162 FNL--------------------MGVKADI---QTLNILTK-------SYGRAGMYDKMRSVMDFMQKRF-------FFP 204 (351)
Q Consensus 162 ~~~--------------------~~~~~~~---~~~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~-------~~~ 204 (351)
... .+ .|.. ...+.+-. ++............++.-.... ..+
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~-~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~a 295 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDST-DPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQA 295 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhcc-CccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHH
Confidence 110 00 1110 01111111 1111122222222333322211 123
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284 (351)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (351)
+..+|...+.--...|+.+.+.-+++...-. +..-...|-..+.-....|+.+.|..++....+..++ +......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHH
Confidence 4567777788888888888888888876532 1223345555555555668888888888776655443 2222222222
Q ss_pred H-HHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHH
Q 018743 285 A-YGQAGDVEKMGELFLTMKERHCVPDNI-TFATMIQAYNALGMTEAAQ 331 (351)
Q Consensus 285 ~-~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~ 331 (351)
. .-..|+++.|..+++.+.+. . |+.. .-..-+....+.|+.+.+.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhh
Confidence 2 33457899999999988876 3 4433 2223344556677777776
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.53 Score=37.23 Aligned_cols=149 Identities=11% Similarity=0.073 Sum_probs=101.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCH
Q 018743 73 KSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI 152 (351)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (351)
......|++..|..+|+...... +-+...-..+..+|...|+.+.|..++..+.... -.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 34668899999999999988775 4466777889999999999999999999885442 111112222334455555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 018743 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR--FFFPTVVTYNIVIETFGKAGHIEKME 226 (351)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 226 (351)
.+...+-.++... +.|...-..+...+...|+.+.|.+.+-.+.++ +.. |...-..++..+.-.|.-+.+.
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHH
Confidence 5444544444431 447777788889999999999999887776554 333 4555667777777777443333
No 260
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.06 E-value=0.72 Score=38.52 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=50.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743 204 PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP---NSITYCSLVSAYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 204 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 269 (351)
....+|..++..+.+.|+++.|...+..+...+... .+.....-++.+...|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888889999999999999999887754221 344555566777788999999998888776
No 261
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.90 E-value=0.89 Score=38.31 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 312 ITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
.+|..++....+.++...|...+.-+...+|.
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 35666666666777777777666666655554
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.88 E-value=0.33 Score=33.22 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=69.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHH
Q 018743 76 TKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKM 155 (351)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 155 (351)
.-.|..++..++..+...+. +..-+|-++.-....-+-+-..++++.+-+. -|... .|+....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDis~----------C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDISK----------CGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-GGG-----------S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh----cCchh----------hcchHHH
Confidence 34566677777777766543 4455555555555555556666666665332 12211 2222333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (351)
...+-.+ ..+......-+..+...|.-++..+++..+.+ +-.+++...-.+..+|.+.|+..++-+++.+.-+.
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3222221 12333445556666667777777777766654 23345666666677777777777777777777766
Q ss_pred CCC
Q 018743 236 GMK 238 (351)
Q Consensus 236 ~~~ 238 (351)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 643
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.85 E-value=0.62 Score=36.09 Aligned_cols=61 Identities=23% Similarity=0.218 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDN---ITFATMIQAYNALGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 281 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 342 (351)
.+.+.|.+.|.+..|..-+++|++. .+-.. ..+-.+..+|...|..++|...-.-+....|
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 3456677777777777777777765 32222 2444555677777777777766555544333
No 264
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.84 E-value=0.4 Score=33.82 Aligned_cols=6 Identities=17% Similarity=-0.163 Sum_probs=2.1
Q ss_pred HhHHHH
Q 018743 257 IMKVDS 262 (351)
Q Consensus 257 ~~~a~~ 262 (351)
++.|.+
T Consensus 112 ~~~a~~ 117 (140)
T smart00299 112 YEKAIE 117 (140)
T ss_pred HHHHHH
Confidence 333333
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.68 E-value=0.5 Score=33.78 Aligned_cols=119 Identities=15% Similarity=0.054 Sum_probs=67.8
Q ss_pred HhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHH
Q 018743 207 VTYNIVIET---FGKAGHIEKMEEYFKKMKHRGMKPNSI-TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCI 282 (351)
Q Consensus 207 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 282 (351)
.+.+.|+.. -...++.+++..++..+.-. .|... .-..-...+...|++.+|..+|+++.... |....-..|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 334444443 45678899999999988875 44432 22333445678899999999999987664 333444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332 (351)
Q Consensus 283 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 332 (351)
+..|....+-..=...-+++.+.+-.|+. ..+++.+....+...|..
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 55555443333333334445555433332 334455555544444433
No 266
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.68 E-value=0.52 Score=34.02 Aligned_cols=136 Identities=10% Similarity=0.054 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-HHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV-TYNT 105 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 105 (351)
+...|..-++ +.+.++.++|+.-|..+.+ .|...-+. ............|+...|...|+++-.....|-.. -...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 4455555554 3456677888888888776 34332221 22233344667788888888888876654333322 1111
Q ss_pred --HHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 018743 106 --IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166 (351)
Q Consensus 106 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 166 (351)
-.-.+...|.++......+.+... +.+.....-..|.-+..+.|++.+|.++|..+....
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 122355678888877777776433 344445556667777778888888888888776543
No 267
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.62 E-value=0.85 Score=36.08 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=34.8
Q ss_pred CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHH
Q 018743 97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYN 160 (351)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (351)
.++..+...++..+++.++|..-.++++......+...|...|..++......||..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 4455555555566666666666666665554443344455556666666666665554444443
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.61 E-value=0.5 Score=33.31 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=19.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC
Q 018743 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149 (351)
Q Consensus 105 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (351)
.++..+...+.......+++.+...+ +.+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence 34444444445555555555554442 23334445555555443
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.48 E-value=0.3 Score=38.64 Aligned_cols=78 Identities=13% Similarity=0.036 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHhHHH
Q 018743 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK-----RFFFPTVVTYNI 211 (351)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 211 (351)
.++..++..+...|+.+.+...++++.... +.+...|..++.+|.+.|+...|+..|+.+.. .|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356666677777777777777777776654 55666777777777777777777777766543 466676666665
Q ss_pred HHHH
Q 018743 212 VIET 215 (351)
Q Consensus 212 l~~~ 215 (351)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.44 E-value=1.1 Score=36.06 Aligned_cols=20 Identities=5% Similarity=-0.125 Sum_probs=15.2
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 018743 319 QAYNALGMTEAAQNLENKMI 338 (351)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~ 338 (351)
..+.+.++++.|..+|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34667889999999988554
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.41 E-value=1.1 Score=36.00 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCChH---HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 018743 102 TYNTIIDGYGKAKKFE---EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165 (351)
Q Consensus 102 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (351)
++..++.+|...+..+ +|..+++.+....|- .+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN--KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4445555565555433 344455555433222 2333444455555566666677766666654
No 272
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.39 E-value=0.2 Score=39.12 Aligned_cols=105 Identities=14% Similarity=0.206 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 018743 168 KADIQTLNILTKSYGR-----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242 (351)
Q Consensus 168 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 242 (351)
..|..+|...+..+.. .+..+-....++.|.+-|+.-|..+|+.|+..+-+..- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 3455566655555543 24555556666667777777777777777765533211 1111
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291 (351)
Q Consensus 243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 291 (351)
.+..+.-.|- .+-+-+++++++|...|+.||..+-..|+.++.+.+-
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 1223355666666666666666666666666655443
No 273
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.34 E-value=0.24 Score=31.64 Aligned_cols=63 Identities=11% Similarity=0.199 Sum_probs=40.9
Q ss_pred CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319 (351)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 319 (351)
|.-++.+-++.+...+..|++.+..+.+++|.+.+++..|+++|+..+.. +..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44456666666777777777777777777777777777777777766643 2223445555543
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=0.44 Score=43.13 Aligned_cols=143 Identities=17% Similarity=0.179 Sum_probs=86.6
Q ss_pred HHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhc
Q 018743 34 ALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113 (351)
Q Consensus 34 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (351)
.....+.+.|++++|...|-+-.. -+.|+. ++.-|....+...--.+++.+.+.|+. +...-..|+.+|.+.
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKl 444 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETIG--FLEPSE-----VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKL 444 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHcc--cCChHH-----HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHh
Confidence 334456678999999998877764 234432 344556666777778888888888854 666677899999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018743 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193 (351)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 193 (351)
++.++-.++.+... .+...-| ....+..+.+.+-.++|..+-.... .+......++ -..+++++|.+.
T Consensus 445 kd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~-----~he~vl~ill---e~~~ny~eAl~y 512 (933)
T KOG2114|consen 445 KDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFK-----KHEWVLDILL---EDLHNYEEALRY 512 (933)
T ss_pred cchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhc-----cCHHHHHHHH---HHhcCHHHHHHH
Confidence 99888777766653 2211112 3344555555555555554443322 1222333332 334566666665
Q ss_pred HHH
Q 018743 194 MDF 196 (351)
Q Consensus 194 ~~~ 196 (351)
+..
T Consensus 513 i~s 515 (933)
T KOG2114|consen 513 ISS 515 (933)
T ss_pred Hhc
Confidence 544
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.33 E-value=1.2 Score=38.01 Aligned_cols=61 Identities=8% Similarity=0.055 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164 (351)
Q Consensus 104 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (351)
..+..++-+.|+.++|.+.+.++.+.............|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3455555566666666666666654421111223455566666666666666666666543
No 276
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.32 E-value=0.24 Score=31.99 Aligned_cols=60 Identities=12% Similarity=0.251 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 319 (351)
+..+-++.+...++.|++.+..+.+++|.+.+++..|+++|+..+.. +.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 56666677777777888888888888888888888888888877754 2333336666554
No 277
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.28 E-value=0.032 Score=28.06 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=22.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 018743 17 FEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAF 49 (351)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 49 (351)
|++.++..+. ++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555544 7778888888888888877775
No 278
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.22 E-value=0.48 Score=35.11 Aligned_cols=89 Identities=15% Similarity=0.064 Sum_probs=54.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccH-----HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc
Q 018743 215 TFGKAGHIEKMEEYFKKMKHRGMKPNS-----ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289 (351)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (351)
-+..+|++++|..-|...+..- ++.. ..|..-..++.+.+.++.|+.-....++.++. .......-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 4566777888887777777652 3322 22333444566777777777777766666543 233333334566777
Q ss_pred CCHHHHHHHHHHHHhc
Q 018743 290 GDVEKMGELFLTMKER 305 (351)
Q Consensus 290 g~~~~a~~~~~~~~~~ 305 (351)
..+++|++=|+.+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777764
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.08 E-value=0.96 Score=33.42 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhHHHH-
Q 018743 30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD--VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIEC-SAVTYNT- 105 (351)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~- 105 (351)
..+..+...|++.|+.+.|++.|.++.. ....+. ...+-.+++.....+++..+...+.+....-..+ +...-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4566777788888888888888888776 333332 3346667777777778877777776664431111 1111111
Q ss_pred -HH--HHHhhcCChHHHHHHHHHHH
Q 018743 106 -II--DGYGKAKKFEEMESSFSAMV 127 (351)
Q Consensus 106 -l~--~~~~~~~~~~~a~~~~~~~~ 127 (351)
.. -.+...+++..|-+.|-...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 11 12234567777777766653
No 280
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.07 E-value=1.2 Score=34.53 Aligned_cols=80 Identities=9% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 018743 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGI--ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143 (351)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 143 (351)
..|+.-+ .-.+.|++++|.+.|+.+....+ +-...+...++-++.+.++++.|+..+++.....+..||.. |...|
T Consensus 36 ~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl 113 (254)
T COG4105 36 ELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL 113 (254)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence 3444433 34467888888888888876531 22344555666777888888888888888888766666653 44444
Q ss_pred HHHh
Q 018743 144 SAYG 147 (351)
Q Consensus 144 ~~~~ 147 (351)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 4443
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.06 E-value=1.2 Score=34.27 Aligned_cols=228 Identities=14% Similarity=0.042 Sum_probs=156.8
Q ss_pred cCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHhhcCChHHHH
Q 018743 42 SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL-GIECSAVTYNTIIDGYGKAKKFEEME 120 (351)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 120 (351)
.+....+...+...............+......+...+++..+...+...... ........+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666777777766652211112566777777888889999888888887652 23556667777778888888899999
Q ss_pred HHHHHHHhcCCCCCCHhHHHHHHH-HHhcCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 121 SSFSAMVESGGCHPDIFTLNSMIS-AYGNSGNIEKMEKWYNEFNLMGV--KADIQTLNILTKSYGRAGMYDKMRSVMDFM 197 (351)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (351)
+.+....... +.+......... .+...|+++.+...+........ ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALD--PDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCC--CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999887643 112222333333 78899999999999999865221 123344444455567788999999999988
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272 (351)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 272 (351)
...........+..+...+...+.++.+...+....... +.....+..+...+...+..+.+...+........
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 776332135667778888888889999999999988763 22244444455555567778999988888876643
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.00 E-value=0.099 Score=26.07 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743 313 TFATMIQAYNALGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 342 (351)
+|..+...|...|++++|.+.|++.++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566777778888888888888888887776
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.00 E-value=0.73 Score=34.04 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccC--HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILD--TPFFNCIISAYGQAGDVEKMGELFLTM 302 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 302 (351)
+..+...|.+.|+.+.|.+.+.++.+....+. ...+-.+++.....+++..+.....++
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444555555544444444322221 122334444444444554444444443
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.99 E-value=0.034 Score=27.97 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHcCCHHHH
Q 018743 311 NITFATMIQAYNALGMTEAA 330 (351)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~A 330 (351)
...|..+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444444444444444444
No 285
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.97 E-value=2.6 Score=37.78 Aligned_cols=276 Identities=11% Similarity=0.041 Sum_probs=152.6
Q ss_pred hHHHHHHHHHhhccCCCCccHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHH-------cCCCCCHhHHHHHHHHHhh
Q 018743 45 LDEAFSTINDMKSVSDCKPDVYTYSILIK----S-CTKFHRFDLIEKILAEMSY-------LGIECSAVTYNTIIDGYGK 112 (351)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 112 (351)
...|.++++...+. | +...-..+.. + ....+|.+.|..+|+.+.+ .| .......+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~-g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL-G---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhh-c---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 45788888877762 2 2222222222 2 4456788999999988876 44 33355566777766
Q ss_pred cC-----ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----
Q 018743 113 AK-----KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG---- 182 (351)
Q Consensus 113 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 182 (351)
.. +.+.|+.++.+..+.+ .|+.......+..... ..+...|.++|......|.. . .+-.+..+|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLG 375 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCC
Confidence 43 6677999999887764 4555444333333333 35678999999998887732 2 2222333222
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH-HH---Hh----c
Q 018743 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS-AY---SK----A 254 (351)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~----~ 254 (351)
-..+...|...+.+.-+.+........ ..+..+.. ++++.+.-.+..+.+.|.. ...+-...+. .. .. .
T Consensus 376 v~r~~~~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~ 452 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVI 452 (552)
T ss_pred cCCCHHHHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccc
Confidence 224678888888888887632222222 22333333 7777777777777666533 2222221111 11 11 1
Q ss_pred CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCC
Q 018743 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA----GDVEKMGELFLTMKERHCVPDNITFATMIQAYNA----LGM 326 (351)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 326 (351)
.+...+...+.+....| +......+...|..- .+++.|...|......+ ......+...+.. ..
T Consensus 453 ~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~- 524 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV- 524 (552)
T ss_pred cchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-
Confidence 24445555665555443 444455555544433 34777777777777664 2222223222221 22
Q ss_pred HHHHHHHHHHHHHhccc
Q 018743 327 TEAAQNLENKMIAMKEN 343 (351)
Q Consensus 327 ~~~A~~~~~~~~~~~~~ 343 (351)
+..|.+++++..+.+..
T Consensus 525 ~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 525 LHLAKRYYDQASEEDSR 541 (552)
T ss_pred hHHHHHHHHHHHhcCch
Confidence 67888888877765543
No 286
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.93 E-value=3.6 Score=39.28 Aligned_cols=110 Identities=10% Similarity=0.051 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH--HHHHHHHH
Q 018743 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI--TYCSLVSA 250 (351)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 250 (351)
.|.+....+...+.+++|.-.|+..-+. ...+.+|..+|+|.+|+.+..++... -+.. +-..|+..
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence 3444555556667777777777654332 24567777788888888877765431 1221 22567777
Q ss_pred HHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302 (351)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 302 (351)
+...+++-+|-++..+.... ....+..+++...|++|.++....
T Consensus 1009 L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 77788888887777765532 122334455666666666655443
No 287
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.76 E-value=1.1 Score=32.48 Aligned_cols=14 Identities=43% Similarity=0.368 Sum_probs=5.4
Q ss_pred hcCCHhHHHHHHHH
Q 018743 253 KAGLIMKVDSILRQ 266 (351)
Q Consensus 253 ~~g~~~~a~~~~~~ 266 (351)
+.|++..|.+.|..
T Consensus 179 kagd~a~A~~~F~q 192 (221)
T COG4649 179 KAGDFAKAKSWFVQ 192 (221)
T ss_pred hccchHHHHHHHHH
Confidence 33333333333333
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.76 E-value=0.095 Score=26.73 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 303 (351)
++..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888889999999999888854
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.74 E-value=4.1 Score=38.98 Aligned_cols=86 Identities=9% Similarity=0.086 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (351)
|.+....+.....+++|.-.|+..=+ ....+.+|..+|+|.+|..+..++....-. -..+-..|..-+..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHH
Confidence 33444445556777777766665322 233466777888888888888776532211 11122567777888
Q ss_pred cCCHHHHHHHHHHHHh
Q 018743 289 AGDVEKMGELFLTMKE 304 (351)
Q Consensus 289 ~g~~~~a~~~~~~~~~ 304 (351)
.++.-+|-++..+...
T Consensus 1012 ~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cccchhHHHHHHHHhc
Confidence 8888888888877664
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.70 E-value=1.1 Score=35.88 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=71.0
Q ss_pred cCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCC--CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCH
Q 018743 94 LGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG--CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI 171 (351)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 171 (351)
.|.+....+...++..-....+++.+...+-++..+.. ..|+. +-...++.+. .-++++++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 34455566666666666667788888888877754321 11111 1122233222 34677888888888888889999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRF 201 (351)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (351)
++++.+++.+.+.+++.+|..+...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999988888877765543
No 291
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.67 E-value=1.3 Score=32.83 Aligned_cols=96 Identities=16% Similarity=0.017 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCCccC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743 246 SLVSAYSKAGLIMKVDSILRQVENSDVILD--TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323 (351)
Q Consensus 246 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (351)
.+...+...|++++|...++........-+ ..+--.|.+.....|.+++|+.+++...+.+. .......-...+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 345567777888888887776654321111 11222445667777888888888877665433 23334445567788
Q ss_pred cCCHHHHHHHHHHHHHhccc
Q 018743 324 LGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 324 ~g~~~~A~~~~~~~~~~~~~ 343 (351)
.|+.++|+.-|++.+.....
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 88888888888888777543
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=1.6 Score=34.98 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 018743 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246 (351)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 246 (351)
+..+...++..-....+++.+...+-++..+. ..|+...+ ..++.+ -.-++++++.++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhhHHH
Confidence 33344444444444555556655555554321 11111111 122222 22345566666665556666666666666
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhh
Q 018743 247 LVSAYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 247 l~~~~~~~g~~~~a~~~~~~~~~ 269 (351)
++..+.+.+++..|..+...+..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666665555543
No 293
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.31 E-value=1.2 Score=37.96 Aligned_cols=127 Identities=12% Similarity=0.135 Sum_probs=78.7
Q ss_pred HhcCCHHHHHH-HHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHH
Q 018743 217 GKAGHIEKMEE-YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM 295 (351)
Q Consensus 217 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 295 (351)
...|+.-.|-+ ++..+....-.|+.....+.| +...|+++.+...+....+.- .....+...+++.....|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKII-GTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhh-cCCchHHHHHHHhhhchhhHHHH
Confidence 34556555544 344444433344444333333 456788888888777655432 22455677778888888888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCC
Q 018743 296 GELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347 (351)
Q Consensus 296 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 347 (351)
..+-..|....+. ++.............|-+|++.-.|++....++..+..
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 8888888766554 44444444444556777888888888887777665443
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.27 E-value=2.4 Score=34.35 Aligned_cols=130 Identities=11% Similarity=0.189 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHhcCC--
Q 018743 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGR--AG----MYDKMRSVMDFMQKRFF---FPTVVTYNIVIETFGKAGH-- 221 (351)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-- 221 (351)
++...+++.|.+.|+..+..+|.+....... .. ....+..+++.|.+..+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4456677788888877776665543333222 22 24577788888887642 2333444444432 2333
Q ss_pred --HHHHHHHHHHHHHcCCCccH--HHHHHHHHHHHhcCC--HhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743 222 --IEKMEEYFKKMKHRGMKPNS--ITYCSLVSAYSKAGL--IMKVDSILRQVENSDVILDTPFFNCIIS 284 (351)
Q Consensus 222 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (351)
.+.+..+|+.+.+.|+..+. .....++..+..... ..++..+++.+.+.++++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 35567777888877766543 333333333322222 3467778888888888877777665544
No 295
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.25 E-value=0.13 Score=25.31 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=17.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 316 TMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
.+..++.+.|++++|.+.|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455566666666666666666665553
No 296
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.18 E-value=3.6 Score=36.08 Aligned_cols=309 Identities=11% Similarity=0.047 Sum_probs=188.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTI 106 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 106 (351)
+...|..++.---...+.+.+...+..+... -|... -|......=.+.|..+.+.++|++-.. +++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 5667777777655556667788888888853 45544 466666667788999999999999875 467788888877
Q ss_pred HHHHh-hcCChHHHHHHHHHHHhcCCCC-CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-
Q 018743 107 IDGYG-KAKKFEEMESSFSAMVESGGCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR- 183 (351)
Q Consensus 107 ~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 183 (351)
+..+. ..|+.+.....|+......|.. .+...|...+..-...+++.....++++.++....-=...|.........
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQN 199 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcC
Confidence 66554 4678888888999887765543 23446888888888899999999999998864221111222222222211
Q ss_pred ----cCCHHHHHHHHHHHHHc----CCCCCHHhHHH------------------HH-------HHHHhcCCHHHHHHHHH
Q 018743 184 ----AGMYDKMRSVMDFMQKR----FFFPTVVTYNI------------------VI-------ETFGKAGHIEKMEEYFK 230 (351)
Q Consensus 184 ----~~~~~~a~~~~~~~~~~----~~~~~~~~~~~------------------l~-------~~~~~~~~~~~a~~~~~ 230 (351)
....+++.++-...... ...+....+.. +- ..+.......+....++
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE 279 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFE 279 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhh
Confidence 12233333332222110 00001111111 11 11111112222222233
Q ss_pred HHHHc---CC----CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 231 KMKHR---GM----KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 231 ~~~~~---~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 303 (351)
.-.+. .+ +++..+|...+.--...|+.+.+.-++++..-.- ..-...|-..+.-....|+.+-|..++.+..
T Consensus 280 ~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 280 EGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred hhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 22221 11 2355678888888889999999999999876432 2234456666666677799999998888877
Q ss_pred hcCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhcc
Q 018743 304 ERHCVPDNITFATMIQA-YNALGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 304 ~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~ 342 (351)
+--++ +......+-.. ....|+++.|..+++.+.+.-|
T Consensus 359 ~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p 397 (577)
T KOG1258|consen 359 KIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEYP 397 (577)
T ss_pred hhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence 65333 33333333233 4456899999999999987653
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.99 E-value=1.7 Score=31.56 Aligned_cols=36 Identities=8% Similarity=0.191 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 018743 15 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFS 50 (351)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 50 (351)
+.+..+.+.+++|+...+..+++.+.+.|++.....
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 344445555666666666666666666666554433
No 298
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.94 E-value=0.46 Score=30.44 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=33.6
Q ss_pred HHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743 47 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 108 (351)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (351)
++.+-++.+.. ....|++....+.+++|.+.+|+..|.++|+-.+... ..+...|..++.
T Consensus 25 e~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 33444444444 4456666667777777777777777777776655321 113345555444
No 299
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.93 E-value=2.1 Score=32.41 Aligned_cols=188 Identities=11% Similarity=0.022 Sum_probs=98.1
Q ss_pred HhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChH
Q 018743 39 YGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117 (351)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 117 (351)
|-..|-+.-|.-=|.+.... .|+ +.+||.+.--+...|+++.|.+.|+...+.+.. ...+...-.-++.-.|++.
T Consensus 75 YDSlGL~~LAR~DftQaLai---~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 75 YDSLGLRALARNDFSQALAI---RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhc---CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchH
Confidence 33445455555445555443 333 455777777778888888888888888776522 2223222223344568888
Q ss_pred HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHH
Q 018743 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI-LTKSYGRAGMYDKMRSVMDF 196 (351)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~ 196 (351)
-|.+-+.+.-+.....|-...|--+.. +.-++.+|..-+.+--. ..|..-|.. ++..|...=..+.+.+-...
T Consensus 151 LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a 224 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEETLMERLKA 224 (297)
T ss_pred hhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHHHHHHHHh
Confidence 888877777666433332333333332 33455566544433221 122222222 22333222222222221111
Q ss_pred HHHcC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743 197 MQKRF---FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236 (351)
Q Consensus 197 ~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (351)
-...+ -..-+.||--+...+...|+.++|..+|+-.+..+
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 11100 00124678888888888888888888888877664
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.73 E-value=1.8 Score=31.02 Aligned_cols=51 Identities=10% Similarity=-0.140 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 018743 77 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128 (351)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 128 (351)
+.++.+.+..+++.+.... |-....-..-...+...|+|.+|..+|+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4445555555555554432 11111111122234455555555555555543
No 301
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=2.7 Score=32.51 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhc---CCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENS---DVILDTPFFNCIISAYGQAGDVEKMGELF 299 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 299 (351)
|...|-.+....++..|.+.++.--+. .-.-+..+...|+.+|- .|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 333444444555666666666653221 11124445555665553 45555555443
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.56 E-value=0.26 Score=25.83 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743 312 ITFATMIQAYNALGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 341 (351)
.+++.+...|...|++++|..++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 567788888888888888888888886653
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.46 E-value=1.9 Score=30.41 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=35.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743 217 GKAGHIEKMEEYFKKMKHRGMKPNS-ITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272 (351)
Q Consensus 217 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 272 (351)
...++++++..++..|.-. .|+. ..-..-...+...|++.+|..+|+++.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3477888888888887764 3432 2222223345678888888888888887653
No 304
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.43 E-value=3.3 Score=35.39 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=51.6
Q ss_pred HHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743 37 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116 (351)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (351)
......|+++.+...+...... +.....+...+++...+.++++.|...-.-|....++ ++.........--..|-+
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~ 407 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLF 407 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHH
Confidence 3445567777777666655532 2334455666666667777777777777666655544 333333333333345566
Q ss_pred HHHHHHHHHHHhc
Q 018743 117 EEMESSFSAMVES 129 (351)
Q Consensus 117 ~~a~~~~~~~~~~ 129 (351)
+++.-.|+++...
T Consensus 408 d~~~~~wk~~~~~ 420 (831)
T PRK15180 408 DKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHhcc
Confidence 6676666666544
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.31 E-value=0.3 Score=24.27 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
+|..+..++...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666667777777777766665
No 306
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=93.24 E-value=1.5 Score=28.44 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 018743 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88 (351)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 88 (351)
..++|..+-+.+...+-. ...+--.-+..+...|++++|+.+.+.+. .||...|..|-. .+.|-.+....-+
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-----YPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-----CchHHHHHHHHH--HhhccHHHHHHHH
Confidence 345666666655543211 11122222345666677777766665442 566666655433 2555556566666
Q ss_pred HHHHHcCCCCCHhHH
Q 018743 89 AEMSYLGIECSAVTY 103 (351)
Q Consensus 89 ~~~~~~~~~~~~~~~ 103 (351)
.+|..+| .|....|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 6666655 3343333
No 307
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.13 E-value=4 Score=33.14 Aligned_cols=131 Identities=13% Similarity=0.190 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh--c----CChHHHHHHHHHHHhcCCCC--CCHhHHHHHHHHHhcCCCH
Q 018743 81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGK--A----KKFEEMESSFSAMVESGGCH--PDIFTLNSMISAYGNSGNI 152 (351)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 152 (351)
++....+++.|.+.|...+..+|.+....... . .....|..+|+.|.+....- ++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566778888888877777666553332222 2 23456777888887664322 222334444332 33333
Q ss_pred ----HHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 018743 153 ----EKMEKWYNEFNLMGVKADIQ--TLNILTKSYGRAGM--YDKMRSVMDFMQKRFFFPTVVTYNIVI 213 (351)
Q Consensus 153 ----~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 213 (351)
+.+..+|+.+.+.|+..+.. ....++........ ...+.++++.+.+.++++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 44566666666666554322 22333332222222 235666667777777666666665543
No 308
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=6.8 Score=35.60 Aligned_cols=317 Identities=10% Similarity=0.086 Sum_probs=166.6
Q ss_pred ccCCCHHHHHHHHHHH--------HhCCCCCCHHHHHH-----HHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHH
Q 018743 5 GKCKQPEQASLLFEVM--------LSDGLKPSVDVYTA-----LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSIL 71 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 71 (351)
.+..++++-..+.+.+ ..-|++.+..-|.. ++.-+...+.+..|+++-..+.... ..+...|...
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~W 477 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEW 477 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHH
Confidence 3445555555444432 23366666555544 4666777788889988888776411 1114556666
Q ss_pred HHHHHhcCC--HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC---CCHhHHHHHHHHH
Q 018743 72 IKSCTKFHR--FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCH---PDIFTLNSMISAY 146 (351)
Q Consensus 72 ~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~ 146 (351)
..-+.+..+ -+.+.+.+++=..... .....|..+.+--...|+.+-|..+++.=....... .+..-+...+.-+
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 666555432 2233333332222212 234456667776777899888888876432211000 1112244455566
Q ss_pred hcCCCHHHHHHHHHHHHhc-----------CCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHH--HHH----HcC
Q 018743 147 GNSGNIEKMEKWYNEFNLM-----------GVKADIQTLNILTKS--------YGRAGMYDKMRSVMD--FMQ----KRF 201 (351)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~--~~~----~~~ 201 (351)
...||.+-...++-.+... ..+.....|.-+++- +...++-.++...|. ... ..+
T Consensus 557 ies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~ 636 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEG 636 (829)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcc
Confidence 6777776666655544321 112222233322221 111111112211111 100 012
Q ss_pred CCCCHHhHHHHHHHHHhcCCHH---H-------HHHHHHHHH-HcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743 202 FFPTVVTYNIVIETFGKAGHIE---K-------MEEYFKKMK-HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270 (351)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~---~-------a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 270 (351)
..|+. .....++.+..... + -+.+.+.+. +.|......+.+.-+..+...|+..+|.++-.+.+
T Consensus 637 r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-- 711 (829)
T KOG2280|consen 637 RIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-- 711 (829)
T ss_pred cchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--
Confidence 22222 23334444433311 1 111222222 12333444566667777888899999998877665
Q ss_pred CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337 (351)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (351)
.||...|..=+.+++..++|++-+++-+... .+.-|.-.+.+|.+.|+.++|.+++.+.
T Consensus 712 --ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 712 --IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred --CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 4588889888999999999998777655443 2445666777777888888877776544
No 309
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.05 E-value=2.3 Score=31.13 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=5.5
Q ss_pred CCCHHHHHHHHHH
Q 018743 308 VPDNITFATMIQA 320 (351)
Q Consensus 308 ~p~~~~~~~l~~~ 320 (351)
.|+..+|+.-+..
T Consensus 110 ~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 110 DPNNELYRKSLEM 122 (186)
T ss_dssp -TT-HHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 4555555544443
No 310
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.05 E-value=13 Score=38.81 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=51.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 276 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
..+|-...+.....|.++.|...+-.+.+.+ . +..+--.+..+.+.|+...|+.++++.++....
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 4578888888888999999998888877765 3 344555667789999999999999999865443
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.98 E-value=0.47 Score=38.27 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=62.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH
Q 018743 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292 (351)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 292 (351)
..-|.+.|.+++|++.|....... +-|+.++..-..+|.+...+..|+.-.......+-. -...|+.-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhH
Confidence 456778888888888888876652 337778877788888888888777766666544321 233455555555556666
Q ss_pred HHHHHHHHHHHhcCCCCCH
Q 018743 293 EKMGELFLTMKERHCVPDN 311 (351)
Q Consensus 293 ~~a~~~~~~~~~~~~~p~~ 311 (351)
.+|.+=++...+ +.|+.
T Consensus 182 ~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHHhHHHHHh--hCccc
Confidence 666666666665 35553
No 312
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.79 E-value=3 Score=31.23 Aligned_cols=78 Identities=19% Similarity=0.133 Sum_probs=50.6
Q ss_pred HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHcCCHH
Q 018743 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER---HCVPDNITFATMIQAYNALGMTE 328 (351)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 328 (351)
.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++.+..+. +-.+|+..+.+|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33344 456666666666555445555555555444 56778888887776643 23567778888888888888887
Q ss_pred HHH
Q 018743 329 AAQ 331 (351)
Q Consensus 329 ~A~ 331 (351)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 313
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=92.51 E-value=2 Score=28.20 Aligned_cols=79 Identities=19% Similarity=0.194 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 018743 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88 (351)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 88 (351)
..++|..+.+.+...+.. ...+--.-+..+.+.|++++| +..-.. ...||...|..|- -.+.|-.+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~---~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA--LLLPQC---HCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH--HHHHTT---S--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH--HHhccc---CCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 445566666665554321 122222233445566666666 111111 1245555554443 23555555555555
Q ss_pred HHHHHcC
Q 018743 89 AEMSYLG 95 (351)
Q Consensus 89 ~~~~~~~ 95 (351)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 5555444
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.43 E-value=0.54 Score=23.17 Aligned_cols=28 Identities=29% Similarity=0.233 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
.+..+...+...|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666677777777777777766653
No 315
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.33 E-value=1.6 Score=28.40 Aligned_cols=47 Identities=4% Similarity=0.051 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555555566666666666666666666666666665554
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.20 E-value=0.42 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHH
Q 018743 101 VTYNTIIDGYGKAKKFEEMESSFSAMV 127 (351)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 127 (351)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555566666666666666665554
No 317
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.75 E-value=6.9 Score=32.65 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 169 ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP---TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235 (351)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (351)
....++..++..+.+.|.++.|...+..+...+... .+...-.-+...-..|+..+|+..++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445678889999999999999999999988754211 3344445567777889999999999988873
No 318
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.66 E-value=11 Score=34.65 Aligned_cols=251 Identities=8% Similarity=-0.009 Sum_probs=125.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC
Q 018743 70 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149 (351)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (351)
..+..+.+.+++......+.. .+.+...-.....+....|+.++|......+-..+.. .+..++.++..+.+.
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~--~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS--LPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CChHHHHHHHHHHHc
Confidence 334445566676666652211 1445555455667777778877776666666444322 334566676666655
Q ss_pred CCHHHHH--HHHHHHHhcCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 018743 150 GNIEKME--KWYNEFNLMGVKADIQTLNILTKSYGR------------AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET 215 (351)
Q Consensus 150 ~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (351)
|...... +-+..+...| +......+...+.. ..+...+...+.. ..|+...-..++.+
T Consensus 177 g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~ 248 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVA 248 (644)
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHH
Confidence 5433321 1122222222 11111222221100 0111111111111 11222111111112
Q ss_pred H--HhcCCHHHHHHHHHHHHHcC-CCccH--HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743 216 F--GKAGHIEKMEEYFKKMKHRG-MKPNS--ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290 (351)
Q Consensus 216 ~--~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 290 (351)
+ ....+.+.|..++....... ..+.. .....+.......+...++...++...... .+......-++.-...+
T Consensus 249 l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 249 FASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHcc
Confidence 1 23456688888888764432 22222 223344433334332556666666544332 24445555566666889
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 018743 291 DVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338 (351)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (351)
+++.+...+..|.... .-...-.--+.+++...|+.++|...|+++.
T Consensus 327 dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 327 DRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999988888886532 2233444456777778999999999998874
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.65 E-value=0.066 Score=37.98 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290 (351)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 290 (351)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++.... .-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence 45667777788888888888888766556677888888888888777777777762221 22345677778888
Q ss_pred CHHHHHHHHHHHHhcC--CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743 291 DVEKMGELFLTMKERH--CV--PDNITFATMIQAYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 291 ~~~~a~~~~~~~~~~~--~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 339 (351)
.+++|.-++.++.... +. -....+...+..+.+.++.+-...+.+..++
T Consensus 85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~ 137 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLD 137 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 8888888887755322 11 1223344444555555554444444444433
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=4 Score=36.00 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=71.2
Q ss_pred HHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743 37 SAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116 (351)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (351)
....+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+-
T Consensus 645 elal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~ 708 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNA 708 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCCh
Confidence 34457889999988776543 455699999999999999999998887654 34566667777777
Q ss_pred HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 018743 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEF 162 (351)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (351)
+....+-....+.+ +.+. +| .+|...|+++++.+++..-
T Consensus 709 ~~l~~la~~~~~~g--~~N~-AF----~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 709 EGLAVLASLAKKQG--KNNL-AF----LAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHHHHHhhc--ccch-HH----HHHHHcCCHHHHHHHHHhc
Confidence 66555555554443 3333 22 3455678998888877654
No 321
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.23 E-value=5 Score=30.05 Aligned_cols=91 Identities=14% Similarity=0.027 Sum_probs=49.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 018743 181 YGRAGMYDKMRSVMDFMQKRFFFPT----VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256 (351)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 256 (351)
+.+.|++++|..-|......-+... ...|..-..++.+.+.++.|+.--.+.++.+ +........-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 4456666666666666555422211 1234444455666666666666666666553 2223333333455666666
Q ss_pred HhHHHHHHHHhhhcCC
Q 018743 257 IMKVDSILRQVENSDV 272 (351)
Q Consensus 257 ~~~a~~~~~~~~~~~~ 272 (351)
+++|+.-|..+.+..+
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 7777777776666543
No 322
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.21 E-value=3.5 Score=30.89 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=59.2
Q ss_pred HHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHhhcC
Q 018743 38 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL---GIECSAVTYNTIIDGYGKAK 114 (351)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ 114 (351)
.+.+.|+ +.|.+.|-.+.. .+.--++.....|...|. ..|.+++..++....+. +-.+|+..+.+|+..+.+.|
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred HhhccCc-HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 3455565 678888888887 444445555555555554 67889999999887654 33678999999999999999
Q ss_pred ChHHHH
Q 018743 115 KFEEME 120 (351)
Q Consensus 115 ~~~~a~ 120 (351)
+++.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 998874
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.21 E-value=0.52 Score=22.37 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743 313 TFATMIQAYNALGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 341 (351)
.|..+...+...|+++.|...+++.++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 34455555666666666666666655543
No 324
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.17 E-value=4.5 Score=29.43 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018743 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDK 189 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 189 (351)
.++++.+.+.+++|+...+..+++.+.+.|++..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444444455555555555555555555555443
No 325
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.14 E-value=5.4 Score=30.31 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
+|--+...+...|+.++|..+|+-.+..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4555555556666666666666655544
No 326
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.86 E-value=0.49 Score=21.91 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 018743 315 ATMIQAYNALGMTEAAQNLEN 335 (351)
Q Consensus 315 ~~l~~~~~~~g~~~~A~~~~~ 335 (351)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666665554
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.83 E-value=0.41 Score=25.73 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=13.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 018743 317 MIQAYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~ 339 (351)
+..+|...|+.+.|++++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44556666666666666666553
No 328
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=90.70 E-value=3 Score=28.40 Aligned_cols=59 Identities=12% Similarity=0.269 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMI 318 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 318 (351)
+..+-+..+...++.|++.+....+++|-+.+|+..|.++|+..+.. +.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 34455566666677777777777777777777777777777776643 232333344443
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.49 E-value=0.62 Score=22.71 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 281 CIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 281 ~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
.+..++.+.|++++|.+.|+++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666667777777777776654
No 330
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.34 E-value=13 Score=33.16 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 018743 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218 (351)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (351)
.+.++..+.+.|-.++|++ +.+|.... .....+.|+++.|.++..+.. +..-|..|.++..+
T Consensus 617 rt~va~Fle~~g~~e~AL~---------~s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALE---------LSTDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhh---------cCCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 4445555555555555543 23333321 233345677777766654432 45567778888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298 (351)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 298 (351)
.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. | ...-++...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHH
Confidence 8888888777766443 345555666667766555555555554432 2 333456677888888777
Q ss_pred HHH
Q 018743 299 FLT 301 (351)
Q Consensus 299 ~~~ 301 (351)
+..
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 654
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.32 E-value=1 Score=33.98 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=45.4
Q ss_pred HHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHH
Q 018743 33 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG--IECSAVTYNTIIDGY 110 (351)
Q Consensus 33 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~ 110 (351)
+..++.+.+.+.+++++...+.-.+.. +.|..+-..+++.++-.|++++|..-++-.-... ..+-..+|..++.+-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 344556666677777777666555421 3345556666777777777777776666554432 223455666666654
Q ss_pred h
Q 018743 111 G 111 (351)
Q Consensus 111 ~ 111 (351)
.
T Consensus 83 a 83 (273)
T COG4455 83 A 83 (273)
T ss_pred H
Confidence 4
No 332
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.08 E-value=14 Score=33.29 Aligned_cols=279 Identities=13% Similarity=0.081 Sum_probs=153.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HhccCChHHHHHHHHHhhcc------CCCCccHHHHHHHHHHHHhc-
Q 018743 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSA---YGQSGLLDEAFSTINDMKSV------SDCKPDVYTYSILIKSCTKF- 78 (351)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~- 78 (351)
+...|.++++...+.|.. .......++.. +....+.+.|+.+|+...+. .+ +......+..+|.+.
T Consensus 227 ~~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 357788999988887532 22222222222 33566899999999988651 12 222355566666553
Q ss_pred ---C-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh-cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh--cCCC
Q 018743 79 ---H-RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG--NSGN 151 (351)
Q Consensus 79 ---~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 151 (351)
. +...|..++....+.| .|+.......+..... ..+...|.++|....+.+ .+...-+..++.... ...+
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCC
Confidence 2 6788999999999888 4565554444333333 356789999999997764 223222222222222 3457
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH----HHh----cCCHH
Q 018743 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET----FGK----AGHIE 223 (351)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~----~~~~~ 223 (351)
...|..++.+..+.| .|....-...+..+.. +.++.+...+..+...+.. ...+-...+.. ... ..+.+
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchh
Confidence 889999999998887 4443333333344444 7777777777766665433 22211111111 111 22456
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhc----CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH----HhcCCHHHH
Q 018743 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKA----GLIMKVDSILRQVENSDVILDTPFFNCIISAY----GQAGDVEKM 295 (351)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a 295 (351)
.+...+......| +......+...|... .+++.+...+......+ ....| .+...+ .-.. +..|
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~-nlg~~~e~g~g~~~-~~~a 528 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALF-NLGYMHEHGEGIKV-LHLA 528 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHh-hhhhHHhcCcCcch-hHHH
Confidence 6666666666554 334444444444332 24566666666555443 11222 122111 1122 5666
Q ss_pred HHHHHHHHhc
Q 018743 296 GELFLTMKER 305 (351)
Q Consensus 296 ~~~~~~~~~~ 305 (351)
.++++...+.
T Consensus 529 ~~~~~~~~~~ 538 (552)
T KOG1550|consen 529 KRYYDQASEE 538 (552)
T ss_pred HHHHHHHHhc
Confidence 7777766654
No 333
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=89.95 E-value=8.4 Score=30.56 Aligned_cols=87 Identities=17% Similarity=0.186 Sum_probs=40.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----
Q 018743 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK---- 218 (351)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 218 (351)
|++++..++|.+++.+.-+.-+..-+....+...-|-.|.+.+++..+.++-.......-.-+...|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4555555555555554444332222222334444444555566655555555554443222223335554444433
Q ss_pred -cCCHHHHHHHH
Q 018743 219 -AGHIEKMEEYF 229 (351)
Q Consensus 219 -~~~~~~a~~~~ 229 (351)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45666665554
No 334
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.67 E-value=3.1 Score=25.68 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=31.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743 288 QAGDVEKMGELFLTMKERHCVPD--NITFATMIQAYNALGMTEAAQNLENK 336 (351)
Q Consensus 288 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (351)
...+.++|+..|....+.-..|. -.++..++++|+..|++.+++++.-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777765432222 12556677777778877777665543
No 335
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.39 E-value=11 Score=31.13 Aligned_cols=97 Identities=10% Similarity=0.010 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 168 KADIQTLNILTKSYGRAGM------------YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235 (351)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (351)
+-|..+|..++..--..-. .+.-+.++++..+.++ .+......++..+.+..+.+...+.|+++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566666666654332211 2333445555555432 24455555555555555666666666666554
Q ss_pred CCCccHHHHHHHHHHHHh---cCCHhHHHHHHHH
Q 018743 236 GMKPNSITYCSLVSAYSK---AGLIMKVDSILRQ 266 (351)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~ 266 (351)
. +-+...|...+..... .-.++....+|.+
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 2 2244555555544332 2234455555544
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.34 E-value=4.7 Score=30.67 Aligned_cols=132 Identities=11% Similarity=0.037 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--cCHHhHHHHHHH
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LDTPFFNCIISA 285 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 285 (351)
|.+..++.+.+.+...+++...++-++.. +.|...-..+++.++-.|++++|..-++-.-+..+. +....|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556778888999999999998888774 556777888999999999999999888876654332 344566666654
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC-CHHHHH-HHHHHHH-HcC-CHHHHHHHHHHHHHhcccCCC
Q 018743 286 YGQAGDVEKMGELFLTMKERHCVP-DNITFA-TMIQAYN-ALG-MTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~-~l~~~~~-~~g-~~~~A~~~~~~~~~~~~~~~~ 346 (351)
-.-.. ++|.-=..-|+.- +...|. .+..+.. +.+ .-+.+..+-+...+..+.+..
T Consensus 82 ea~R~------evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 82 EAARN------EVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHHH------HHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 32111 1222111112211 223344 3333333 333 445566666777777766543
No 337
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.31 E-value=5.6 Score=27.62 Aligned_cols=68 Identities=9% Similarity=-0.041 Sum_probs=32.7
Q ss_pred CccHHHHHHHHHHHHhcCC---HhHHHHHHHHhhh-cCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 238 KPNSITYCSLVSAYSKAGL---IMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
.++..+-..+..++.+..+ ..+.+.+++.+.+ ..+.-......-|.-++.+.++++.+.++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444444455555554432 3345555555554 222212223333444555666666666666655543
No 338
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.92 E-value=3.6 Score=33.55 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=66.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 018743 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257 (351)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 257 (351)
..-|.+.|.+++|+..|.......+. +++++..-..+|.+..++..|..--...+..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 35688999999999999987765332 78888888889999999988877666665543 22233455555555556677
Q ss_pred hHHHHHHHHhhhcCCc
Q 018743 258 MKVDSILRQVENSDVI 273 (351)
Q Consensus 258 ~~a~~~~~~~~~~~~~ 273 (351)
.+|.+-++...+..+.
T Consensus 182 ~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhHHHHHhhCcc
Confidence 7777777776665443
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.87 E-value=1.7 Score=21.40 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
+|..+...+...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667777888888888888888887753
No 340
>PRK09687 putative lyase; Provisional
Probab=88.85 E-value=11 Score=30.40 Aligned_cols=234 Identities=12% Similarity=0.019 Sum_probs=114.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh----HHHHHHHHHHHhcCCCCCCHh
Q 018743 62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF----EEMESSFSAMVESGGCHPDIF 137 (351)
Q Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 137 (351)
.+|.......+.++...|.. .+...+..+... ++...-...+.++.+.|+. .++...+..+... .++..
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~ 106 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSAC 106 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHH
Confidence 34555555555555555542 233333333332 2444444445555555542 3455666555322 34444
Q ss_pred HHHHHHHHHhcCCCH-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 018743 138 TLNSMISAYGNSGNI-----EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212 (351)
Q Consensus 138 ~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (351)
+-...+.++...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+... ++...-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHH
Confidence 444444444443321 122333322222 33555555666666666653 344444444432 344444444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743 213 IETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291 (351)
Q Consensus 213 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 291 (351)
+.++...+ ..+.+...+..+.. .++..+-...+.++.+.|+. .+...+-...+.+ + .....+.++...|.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCC
Confidence 55555442 23455555555553 34566666677777777764 4444444444332 1 23356667777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743 292 VEKMGELFLTMKERHCVPDNITFATMIQAY 321 (351)
Q Consensus 292 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (351)
. +|...+..+.+. .||...-...+.++
T Consensus 251 ~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 251 K-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred H-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 4 567777776653 33555544444444
No 341
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.83 E-value=1.7 Score=24.50 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=13.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 018743 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNIT 313 (351)
Q Consensus 283 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 313 (351)
.-++.+.|++++|.+..+.+.+. .|+..-
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 33455555555555555555542 444443
No 342
>PRK09687 putative lyase; Provisional
Probab=88.50 E-value=12 Score=30.26 Aligned_cols=234 Identities=10% Similarity=-0.022 Sum_probs=146.5
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHh
Q 018743 26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF----DLIEKILAEMSYLGIECSAV 101 (351)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~ 101 (351)
.++..+....+.++...|. +++...+..+.. .+|...-...+.++...|+. .++...+..+... .++..
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 3467777777888887775 445555555554 45666677777788888863 5677778777443 35655
Q ss_pred HHHHHHHHHhhcCC-----hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018743 102 TYNTIIDGYGKAKK-----FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI 176 (351)
Q Consensus 102 ~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 176 (351)
+-...+.++...+. ...+...+..... .++..+-...+.++.+.++. .+...+-.+.. .++..+-..
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~----D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~ 178 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF----DKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNW 178 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh----CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHH
Confidence 55555666555432 1234444444432 33556666777888888874 56666666654 345556666
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 018743 177 LTKSYGRAG-MYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255 (351)
Q Consensus 177 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 255 (351)
-+.++.+.+ ....+...+..+.. .++...-...+.++.+.++. .++..+-...+.+ + .....+.++...|
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig 249 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence 666666653 23456665555554 34666677788888888884 5666666666543 2 2356778888888
Q ss_pred CHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743 256 LIMKVDSILRQVENSDVILDTPFFNCIISAY 286 (351)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (351)
+. +|...+..+.+.. ||..+-...+.++
T Consensus 250 ~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 250 DK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred CH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 86 6888888877643 3665555555544
No 343
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.43 E-value=0.15 Score=36.16 Aligned_cols=79 Identities=13% Similarity=0.244 Sum_probs=39.6
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
+.+.+.++.....++.+...+...+....+.++..|++.++.++..++++... ... ...+++.|.+.|.+++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd-----~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYD-----LDKALRLCEKHGLYEE 88 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS------CTHHHHHHHTTTSHHH
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccC-----HHHHHHHHHhcchHHH
Confidence 44455555666666666655444456666666666666655555555554211 111 2234444555555555
Q ss_pred HHHHHHH
Q 018743 84 IEKILAE 90 (351)
Q Consensus 84 a~~~~~~ 90 (351)
+.-++.+
T Consensus 89 a~~Ly~~ 95 (143)
T PF00637_consen 89 AVYLYSK 95 (143)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 5554444
No 344
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.14 E-value=2 Score=23.11 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=10.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 018743 213 IETFGKAGHIEKMEEYFKKMKH 234 (351)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~ 234 (351)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
No 345
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.78 E-value=14 Score=30.47 Aligned_cols=90 Identities=8% Similarity=0.041 Sum_probs=46.4
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCC------------hHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743 17 FEVMLSDGLKPSVDVYTALVSAYGQSGL------------LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84 (351)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 84 (351)
|++..+..+. |+.+|-.++..--..-. .+.-+.++++..+. .+.+...+...+..+.+..+.+..
T Consensus 8 l~~~v~~~P~-di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 8 LNRRVRENPH-DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3444444444 78888877764322111 23445556665542 133444455555556666666666
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743 85 EKILAEMSYLGIECSAVTYNTIIDGY 110 (351)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (351)
.+-++++.... +-+...|...+...
T Consensus 85 ~~~we~~l~~~-~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 85 AKKWEELLFKN-PGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHC-CCChHHHHHHHHHH
Confidence 66666665553 22455555555443
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.66 E-value=8 Score=27.42 Aligned_cols=51 Identities=8% Similarity=-0.028 Sum_probs=25.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 77 KFHRFDLIEKILAEMSYLGIE-CSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
..++.+.+..+++.|.-.... +...++. ...+...|+|.+|..+|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 355666666666665543211 1122222 23345566666666666666444
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.30 E-value=13 Score=29.53 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=59.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh-
Q 018743 212 VIETFGKAGHIEKMEEYFKKMKHR--GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ- 288 (351)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 288 (351)
=|.+++..+++.++....-+--+. .++| .....-|-.|.+.+.+..+.++-....+..-.-+..-|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 378888999999988766554332 2444 44455555688889998888888887754333344457777766655
Q ss_pred ----cCCHHHHHHHH
Q 018743 289 ----AGDVEKMGELF 299 (351)
Q Consensus 289 ----~g~~~~a~~~~ 299 (351)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 58999998877
No 348
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=13 Score=29.59 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=15.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 018743 316 TMIQAYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~ 339 (351)
-++..+.+.|.+.+|+.+.+.+..
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 455667777888777776665543
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.85 E-value=10 Score=27.89 Aligned_cols=30 Identities=20% Similarity=-0.031 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 018743 10 PEQASLLFEVMLSDGLKPSVDVYTALVSAYG 40 (351)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 40 (351)
|+.|.+.++.-...++. |...++.-..++.
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALL 36 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALL 36 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHH
Confidence 45666666665555544 6665555544443
No 350
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.47 E-value=26 Score=32.10 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH-HHhcCC-----------HHHHHHHHHHHHhcC-----C
Q 018743 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA-YGQAGD-----------VEKMGELFLTMKERH-----C 307 (351)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~-----------~~~a~~~~~~~~~~~-----~ 307 (351)
.....-+...|++++|..+|..+.+.+. -....|.++.- ...... ...|..+.+.....+ +
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La~~~d~--vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~ 495 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLAEEYDK--VLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKV 495 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTT-HHH--HHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhHHH--HHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhc
Confidence 3344456677888888888877664321 12233333332 222222 344444544443321 1
Q ss_pred C-CCHHHHHHHHHH-----HHHcCCHHHHHHHHHHH
Q 018743 308 V-PDNITFATMIQA-----YNALGMTEAAQNLENKM 337 (351)
Q Consensus 308 ~-p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~ 337 (351)
. .+..|+..|++. +...|+++.|++.++++
T Consensus 496 ~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 496 SRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 1 123455555543 55789999999888765
No 351
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.31 E-value=7.1 Score=25.45 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 018743 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159 (351)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (351)
..++|..+-+.+...+- ....+-..-+..+...|++++|..+.+.. ..||...|.++.. .+.|-.+++...+
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 34566666665554431 12222222234566777777777766654 4667766665543 3556666666666
Q ss_pred HHHHhcCCCCCHHHH
Q 018743 160 NEFNLMGVKADIQTL 174 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~ 174 (351)
.++...| .|....|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 6666655 4444443
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.48 E-value=2.9 Score=25.78 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=20.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHhcCCCHHHHHH
Q 018743 112 KAKKFEEMESSFSAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEK 157 (351)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~ 157 (351)
..++.++|+..|...+++..-+++.. ++..++.+++..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544422222211 33344455555555544444
No 353
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.36 E-value=7.6 Score=26.54 Aligned_cols=87 Identities=15% Similarity=0.253 Sum_probs=59.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCChH--HHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 018743 20 MLSDGLKPSVDVYTALVSAYGQSGLLD--EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE 97 (351)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 97 (351)
...+|.. +.+-++.--.-|.....++ +..+-++.+.. ..+.|++......+++|.+.+|+..|.++|+-++..- .
T Consensus 39 ~~~hg~e-t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g 115 (149)
T KOG4077|consen 39 SMEHGPE-TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-G 115 (149)
T ss_pred HhhcCcc-cHHHHHHHHHHHcCcccchHHHHHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-c
Confidence 3445555 5666666555555544333 44455666666 6789999999999999999999999999999887552 3
Q ss_pred CCHhHHHHHHHH
Q 018743 98 CSAVTYNTIIDG 109 (351)
Q Consensus 98 ~~~~~~~~l~~~ 109 (351)
+....|-.++.-
T Consensus 116 ~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 116 AQKQVYPYYVKE 127 (149)
T ss_pred cHHHHHHHHHHH
Confidence 333456666554
No 354
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=85.26 E-value=9.2 Score=28.21 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=9.2
Q ss_pred HhccCChHHHHHHHHHhhc
Q 018743 39 YGQSGLLDEAFSTINDMKS 57 (351)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~ 57 (351)
|.++|.+++|.+++++..+
T Consensus 121 Cm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 121 CMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHhcCchHHHHHHHHHHhc
Confidence 4444555555555544443
No 355
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.06 E-value=16 Score=28.38 Aligned_cols=116 Identities=15% Similarity=0.028 Sum_probs=56.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHHhcCCHh
Q 018743 181 YGRAGMYDKMRSVMDFMQKRFFFPTVV-TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI-TYCSLVSAYSKAGLIM 258 (351)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 258 (351)
|.....++.|...|.+.... .|+.. -|..-+.++.+..+++.+..--.+.++. .||.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 33444566666655554443 34442 3344455666666666666554444443 44433 2334444555566667
Q ss_pred HHHHHHHHhh----hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743 259 KVDSILRQVE----NSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300 (351)
Q Consensus 259 ~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 300 (351)
+|+..+.+.. ...+.+...+...|..+--..=...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 7777666652 23333334444444443333333333334333
No 356
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.64 E-value=15 Score=27.57 Aligned_cols=92 Identities=10% Similarity=0.018 Sum_probs=61.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743 213 IETFGKAGHIEKMEEYFKKMKHRGMKP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290 (351)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 290 (351)
...+...+++++|...++......... ...+--.|.+.....|.+++|...++.....+.. ......-...+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 455677888888888887766431111 1122234556677788888888888877665432 333444566788888
Q ss_pred CHHHHHHHHHHHHhcC
Q 018743 291 DVEKMGELFLTMKERH 306 (351)
Q Consensus 291 ~~~~a~~~~~~~~~~~ 306 (351)
+-++|..-|+...+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888888764
No 357
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.53 E-value=36 Score=32.01 Aligned_cols=227 Identities=12% Similarity=0.044 Sum_probs=118.8
Q ss_pred HhhcCChHHHHHHHHHHHhcCCC---CCCH---hHHHHHH-HHHhcCCCHHHHHHHHHHHHhcC----CCCCHHHHHHHH
Q 018743 110 YGKAKKFEEMESSFSAMVESGGC---HPDI---FTLNSMI-SAYGNSGNIEKMEKWYNEFNLMG----VKADIQTLNILT 178 (351)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~---~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 178 (351)
.....++++|..++.++...-+. .+.. ..++.+- ......|+++.|.++-+.....= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567889999888887544211 1111 1244332 33455788999998888765431 123345566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH---hHHHHH--HHHHhcCCH--HHHHHHHHHHHHc-----CC-CccHHHHH
Q 018743 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVV---TYNIVI--ETFGKAGHI--EKMEEYFKKMKHR-----GM-KPNSITYC 245 (351)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~~~~--~~a~~~~~~~~~~-----~~-~~~~~~~~ 245 (351)
.+..-.|++++|..+.....+..-.-+.. .|..+. ..+...|.. ++....+...... .. .+-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 78888899999999887765532222332 233332 234455632 2223333332221 10 11223445
Q ss_pred HHHHHHHhc-CCHhHHHHHHHHhhhcCCccCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCHHHHHHHH
Q 018743 246 SLVSAYSKA-GLIMKVDSILRQVENSDVILDTPF--FNCIISAYGQAGDVEKMGELFLTMKERHCV----PDNITFATMI 318 (351)
Q Consensus 246 ~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~l~ 318 (351)
.+..++.+. +...++..-+.-.......|-... +..|+......|+.++|...++++...... ++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555541 111222222222222222222222 236778888899999999999988754322 2322222333
Q ss_pred HH--HHHcCCHHHHHHHHHH
Q 018743 319 QA--YNALGMTEAAQNLENK 336 (351)
Q Consensus 319 ~~--~~~~g~~~~A~~~~~~ 336 (351)
.. ....|+...|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 32 3356888877766655
No 358
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.53 E-value=17 Score=28.19 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHc--CCC---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743 220 GHIEKMEEYFKKMKHR--GMK---PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273 (351)
Q Consensus 220 ~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 273 (351)
.+++.|+..|+..-+- |-. .....+..+...-...+++.+|+++|+++....+.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555666666554331 111 11122333444445668888889988887766554
No 359
>PRK10941 hypothetical protein; Provisional
Probab=84.45 E-value=13 Score=29.71 Aligned_cols=61 Identities=11% Similarity=-0.141 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
.+.+-.+|.+.++++.|.++.+.+....+. ++.-+.--.-.|.+.|.+..|..=++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 345555667777777777777777766554 5555555556677777777777777776654
No 360
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.35 E-value=8.8 Score=24.78 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=10.8
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 018743 284 SAYGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 284 ~~~~~~g~~~~a~~~~~~~~ 303 (351)
......|++++|...+++.+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 34444555566555555554
No 361
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.23 E-value=3.3 Score=36.40 Aligned_cols=92 Identities=14% Similarity=0.066 Sum_probs=69.4
Q ss_pred hcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332 (351)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 332 (351)
..|+...|.+.+.......+.-.-.....|.....+.|-.-+|-.++....... ...+.++..+.+++....+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 357888888888776654333233345567777888888888888888877654 4466788888899999999999999
Q ss_pred HHHHHHHhcccCC
Q 018743 333 LENKMIAMKENSG 345 (351)
Q Consensus 333 ~~~~~~~~~~~~~ 345 (351)
.|+++++..+...
T Consensus 698 ~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 698 AFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHhcCCCCh
Confidence 9999988877644
No 362
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=84.18 E-value=4.5 Score=23.72 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743 315 ATMIQAYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 315 ~~l~~~~~~~g~~~~A~~~~~~~~~ 339 (351)
-.++.+|...|++++|.++++++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555555555555555555543
No 363
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.80 E-value=29 Score=30.39 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=70.0
Q ss_pred CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743 99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178 (351)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (351)
|.....+++..+..+-.+.-...+..++..- ..+...+..++.+|... ..++-..+|+++.+..+ .|...-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 4444444555555555555555555555443 23344455555555555 44445555555554332 1222222333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHH
Q 018743 179 KSYGRAGMYDKMRSVMDFMQKRFFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCSLVSAYS 252 (351)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 252 (351)
..|-+ ++.+.+...|..+..+-++. -...|..+... -..+.+....+..++... |...-...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33322 55555555555544432210 01122222211 122344444444444322 22222233334444455
Q ss_pred hcCCHhHHHHHHHHhhhcC
Q 018743 253 KAGLIMKVDSILRQVENSD 271 (351)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~ 271 (351)
...++.+|++++..+.+.+
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 5555555555555555443
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.97 E-value=11 Score=28.28 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743 308 VPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 308 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 342 (351)
.|++.+|..++.++...|+.++|.++.+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555555555555555555555555555554444
No 365
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.51 E-value=21 Score=27.87 Aligned_cols=61 Identities=8% Similarity=-0.029 Sum_probs=31.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 282 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
+.+++...|++-++++.-.+.... .+-|...|..-..+.+..-+.++|.+-|.++++.+|.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 334444555555555555555543 2234445555555555555555555555555555443
No 366
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.42 E-value=33 Score=29.93 Aligned_cols=277 Identities=10% Similarity=0.003 Sum_probs=130.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH--HHHHHHhhccCCCCcc-----------HHHHHHHH
Q 018743 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEA--FSTINDMKSVSDCKPD-----------VYTYSILI 72 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~-----------~~~~~~l~ 72 (351)
..+.++...++++.+...|.......+|.-...|.+.|..+.. ++-++.+.... ..|+ ...+-...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~-~~~~~~~~gld~~~~t~~~yn~a 107 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADA-DAPGDVSSGLSLKQGTVMDYNFA 107 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhh-ccccchhcchhhhcchHHhhhhh
Confidence 3578899999999999988776677788888888888865532 23333332210 0111 11122222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-----hHHHHHHHHHhhcCChHHHHHHHH---HHHhcCCCC-----------
Q 018743 73 KSCTKFHRFDLIEKILAEMSYLGIECSA-----VTYNTIIDGYGKAKKFEEMESSFS---AMVESGGCH----------- 133 (351)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~~~~----------- 133 (351)
-.+.....+..|.++...+...- .|-. .........+....+.++|+.++. ++.......
T Consensus 108 Vi~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~ 186 (696)
T KOG2471|consen 108 VIFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNL 186 (696)
T ss_pred eeeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhh
Confidence 23334445555555544443221 1111 111122334555666666666544 332221111
Q ss_pred -----CCHhHHHHH------------HHHHhcCCCHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018743 134 -----PDIFTLNSM------------ISAYGNSGNIEKMEKWYNE-FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMD 195 (351)
Q Consensus 134 -----~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (351)
|+...-..+ +..+....+...+.+-.+. |...+ .+......-...+.-.|++.+|.+++.
T Consensus 187 ~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~--~s~~~l~LKsq~eY~~gn~~kA~KlL~ 264 (696)
T KOG2471|consen 187 LKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ--DSSMALLLKSQLEYAHGNHPKAMKLLL 264 (696)
T ss_pred cccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC--CCcHHHHHHHHHHHHhcchHHHHHHHH
Confidence 111111111 1111111111111111111 11111 111112222334556688888888775
Q ss_pred HHHH---cCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCccH-----------HHHHHHHH
Q 018743 196 FMQK---RFFFPT-----VVTYNIVIETFGKAGHIEKMEEYFKKMKH-------RGMKPNS-----------ITYCSLVS 249 (351)
Q Consensus 196 ~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-----------~~~~~l~~ 249 (351)
..-- .|...+ -..||.+.-.+.+.|.+..+..+|.+..+ .|++|.. .+|+ ..-
T Consensus 265 ~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN-cG~ 343 (696)
T KOG2471|consen 265 VSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN-CGL 343 (696)
T ss_pred hcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh-hhH
Confidence 5311 121111 12235555555666777777777766553 3433321 1222 233
Q ss_pred HHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288 (351)
Q Consensus 250 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (351)
.|...|++-.|.+.|.+..+.-. .++..|-.+..+|.-
T Consensus 344 ~~Lh~grPl~AfqCf~~av~vfh-~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHVFH-RNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHH
Confidence 45567777777777777665432 367777777777764
No 367
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=81.77 E-value=16 Score=27.08 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCCcc--HHHH-----HHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743 222 IEKMEEYFKKMKHRGMKPN--SITY-----CSLVSAYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~ 269 (351)
.+.|+.+|+.+.+.--.|. .... ...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5566666666655422221 1111 1223345555666666666655554
No 368
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.30 E-value=11 Score=28.25 Aligned_cols=61 Identities=10% Similarity=-0.032 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 69 SILIKSCTKFHRFDLIEKILAEMSYL-GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 69 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
...+......++.+......+.+.+. ...|++.+|..++.++...|+.++|.++..++..-
T Consensus 112 ~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 112 AALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333333444444444333333221 22678888888888888888888888888888654
No 369
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=80.40 E-value=12 Score=23.67 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743 14 SLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84 (351)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 84 (351)
.++++.+.+.|+- +..-...+-.+--..|+.+.|.+++..+.. .|+. |..++.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~r----g~~a--F~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIVQ----KEGW--FSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhcc----CCcH--HHHHHHHHHHcCchhhh
Confidence 4455555555544 333333333333344666666666666652 3443 55566666555554433
No 370
>PRK10941 hypothetical protein; Provisional
Probab=80.20 E-value=29 Score=27.83 Aligned_cols=77 Identities=10% Similarity=-0.011 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHH
Q 018743 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSYG 182 (351)
Q Consensus 104 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 182 (351)
+.+-.+|.+.++++.|+.+.+.+..-. |.++.-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 455667788888888888888887763 4455556666667888888888888777776532 2345555555554443
No 371
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.39 E-value=43 Score=29.44 Aligned_cols=181 Identities=11% Similarity=0.096 Sum_probs=120.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH
Q 018743 62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141 (351)
Q Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 141 (351)
+.|.....+++..+.....++-++.+..+|...| -+-..|..++.+|... ..+.-..+|+++.+-. -.|+..-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHH
Confidence 5566678888899999999999999999999876 3677888899999888 6677788888887752 344444445
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHH
Q 018743 142 MISAYGNSGNIEKMEKWYNEFNLMGVKA--D---IQTLNILTKSYGRAGMYDKMRSVMDFMQKR-FFFPTVVTYNIVIET 215 (351)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 215 (351)
+...|-+ ++.+.+..+|..+...-++. + ...|.-+.... ..+.+....+...+... |...-...+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 5555555 78888888888776543221 1 12333333321 34566666666666543 333344556666677
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 018743 216 FGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251 (351)
Q Consensus 216 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (351)
|....++.+|++++..+.+.. ..|...-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 888889999999999877664 33444444444433
No 372
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=79.16 E-value=19 Score=25.66 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 018743 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255 (351)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 255 (351)
++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34444444444555555555555443333333333333333333
No 373
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.01 E-value=54 Score=30.31 Aligned_cols=278 Identities=7% Similarity=0.010 Sum_probs=139.3
Q ss_pred HhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHH
Q 018743 39 YGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118 (351)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 118 (351)
..+.|++..+.++...+.. .... .-..|..+.... ....+++....+++-. +.|.....-...+..+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d-~pL~-~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKD-YPLY-PYLEYRQLTQDL-MNQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccC-CCcH-hHHHHHHHHhcc-ccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHH
Confidence 4467778888777777653 2221 122233332221 1224555555544422 112223333344556667778777
Q ss_pred HHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH--HHHHH
Q 018743 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR--SVMDF 196 (351)
Q Consensus 119 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~~~~ 196 (351)
....+. . .+.+...-.....+....|+.++|......+-..| ...+.....++..+.+.|...... +-++.
T Consensus 118 ~~~~~~----~--~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~ 190 (644)
T PRK11619 118 LLAFSP----E--KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRL 190 (644)
T ss_pred HHHhcC----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 666221 1 24555566677788888899888877777776665 344556677777777665543322 22222
Q ss_pred HHHcCCCCCHHhHHHHHHHH-----------H-hcCCHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHhcCCHhHHH
Q 018743 197 MQKRFFFPTVVTYNIVIETF-----------G-KAGHIEKMEEYFKKMKHRGMKPNSIT---YCSLVSAYSKAGLIMKVD 261 (351)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~-----------~-~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~ 261 (351)
....+ +...-..+...+ . -..++..+...+.. ++|+... ....+.-+ ...+.+.|.
T Consensus 191 al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rl-ar~d~~~A~ 261 (644)
T PRK11619 191 AMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASV-ARQDAENAR 261 (644)
T ss_pred HHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHH-HHhCHHHHH
Confidence 22221 121112222111 0 01112222221111 1223211 11122222 345678888
Q ss_pred HHHHHhhhcC-CccC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 018743 262 SILRQVENSD-VILD--TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338 (351)
Q Consensus 262 ~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (351)
..+....... ..+. ..+...+.......+...+|...++...... .+......-++.....++++.+...+..|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~ 339 (644)
T PRK11619 262 LMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLP 339 (644)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcC
Confidence 8888764433 2211 1233444444444333566777777654332 244555556666668999999988888874
Q ss_pred H
Q 018743 339 A 339 (351)
Q Consensus 339 ~ 339 (351)
.
T Consensus 340 ~ 340 (644)
T PRK11619 340 M 340 (644)
T ss_pred H
Confidence 4
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.77 E-value=31 Score=27.41 Aligned_cols=202 Identities=14% Similarity=0.183 Sum_probs=106.8
Q ss_pred CCCccHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHhhcCChHHHHHHHHHHHhc---C-C
Q 018743 60 DCKPDVYTYSILIKS-CTKFHRFDLIEKILAEMSYLGIECSAV---TYNTIIDGYGKAKKFEEMESSFSAMVES---G-G 131 (351)
Q Consensus 60 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~ 131 (351)
+..||+..=|..-.. -.+..++++|+.-|++..+........ +...++..+.+.+++++.+..+.++..- . .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345665543332222 123457788888888777654333332 3345677778888888888877776431 0 0
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--
Q 018743 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM-GVKADI----QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP-- 204 (351)
Q Consensus 132 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 204 (351)
-.-+....|.++.....+.+.+-...+|+.-.+. .-..+. .|-..|...|...|++.+..++++++..+.-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 0123345666666666666666655555543221 000111 122446666777777777777777765432110
Q ss_pred ---------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCccHHHHHHHHHHH-----HhcCCHhHHHH
Q 018743 205 ---------TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-GMKPNSITYCSLVSAY-----SKAGLIMKVDS 262 (351)
Q Consensus 205 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~g~~~~a~~ 262 (351)
-...|..-|..|....+-.....++++.... .--|.+... .+|+-| .+.|++++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 1245555666666666666666667665432 123333332 233333 24466666554
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.57 E-value=41 Score=28.66 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=30.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH--hHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 018743 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVV--TYNIVIETFG--KAGHIEKMEEYFKKMKHR 235 (351)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 235 (351)
.+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777777777777665 333333 2333333333 244566676666665543
No 376
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=77.91 E-value=8.3 Score=31.00 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=34.4
Q ss_pred CCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH
Q 018743 61 CKPDVYT-YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105 (351)
Q Consensus 61 ~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 105 (351)
+.|+..+ |+..|....+.||.++|+.++++..+.|+.--..+|..
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4456555 56888889999999999999999999987655555543
No 377
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=77.86 E-value=12 Score=21.99 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=7.2
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 018743 283 ISAYGQAGDVEKMGELFLT 301 (351)
Q Consensus 283 ~~~~~~~g~~~~a~~~~~~ 301 (351)
+.++...|++++|.+++++
T Consensus 30 I~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3344444444444443333
No 378
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.75 E-value=15 Score=23.75 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=13.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhc
Q 018743 106 IIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
+.......|++++|.+.+++.++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334455566666666666665543
No 379
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=77.17 E-value=18 Score=24.21 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478899999999999999999998876
No 380
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.89 E-value=61 Score=29.79 Aligned_cols=185 Identities=14% Similarity=0.081 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHh-CCCCCCH--HHHHHHHHHHh-ccCChHHHHHHHHHhhccCCCCccHH-----HHHHHHHHHHhcCCH
Q 018743 11 EQASLLFEVMLS-DGLKPSV--DVYTALVSAYG-QSGLLDEAFSTINDMKSVSDCKPDVY-----TYSILIKSCTKFHRF 81 (351)
Q Consensus 11 ~~a~~~~~~~~~-~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~ 81 (351)
..|++.++.+.+ ..++|.. .++-.+...+. ...+++.|...+++...... .++.. +-..++..+.+.+..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~-~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE-RHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhcCHH
Confidence 345666666663 3344433 34555566555 67889999999998754321 12221 223445555555554
Q ss_pred HHHHHHHHHHHHcCCC----CCHhHHHHH-HHHHhhcCChHHHHHHHHHHHhcCCCCCCH--hHHHHHHHHH--hcCCCH
Q 018743 82 DLIEKILAEMSYLGIE----CSAVTYNTI-IDGYGKAKKFEEMESSFSAMVESGGCHPDI--FTLNSMISAY--GNSGNI 152 (351)
Q Consensus 82 ~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~--~~~~~~ 152 (351)
. |...+++..+.--. +-...+..+ +..+...+++..|.+.++.+........+. .++..++.+. .+.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 4 88888876554211 222233333 223333479999999998887654323333 3333444333 345666
Q ss_pred HHHHHHHHHHHhcC---------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 018743 153 EKMEKWYNEFNLMG---------VKADIQTLNILTKSYG--RAGMYDKMRSVMDFM 197 (351)
Q Consensus 153 ~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 197 (351)
+++.+.++.+.... ..|...++..+++.++ ..|+++.+...++.+
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777663321 1234556666665544 557766666665544
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.79 E-value=38 Score=27.35 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 302 (351)
++.....|..+|.+.+|.++.++....++- +...+..++..+...|+--.|.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 334444555555555555555555554432 4455555555555555555555555444
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.44 E-value=39 Score=27.29 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMI 338 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (351)
+++...+.|..+|.+.+|.++.++..... +.+...+..+++.+...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45666788999999999999999998763 5577788899999999999888877777664
No 383
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.64 E-value=31 Score=31.27 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHH
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTI 52 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~ 52 (351)
+.-|+ .+..+.-.|.++.|.+++
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL 171 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLL 171 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHH
Confidence 45555 455566667777776666
No 384
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.61 E-value=41 Score=27.12 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=31.7
Q ss_pred CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-CCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENS-DVILDTPFFNCIISAYGQAGDVEKMGELFL 300 (351)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 300 (351)
.++..+...++..++..+++.+-.+++...... ++.-|...|..+|+.....|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 444445555555555555555555555544332 333344555555555555555554444444
No 385
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.27 E-value=27 Score=24.83 Aligned_cols=50 Identities=8% Similarity=0.047 Sum_probs=22.2
Q ss_pred CHhHHHHHHHHHhhcCC-hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC
Q 018743 99 SAVTYNTIIDGYGKAKK-FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS 149 (351)
Q Consensus 99 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (351)
+...|..++.+..+..- ---+..+|.-+.+ .+.+.+..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcC
Confidence 33445555555544333 2233334444433 23455555555555554444
No 386
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=75.22 E-value=16 Score=22.15 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 018743 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQS 42 (351)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 42 (351)
+.+.|.+++..+.... +.++..||.+...+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4566777777776554 34888999888877655
No 387
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.19 E-value=76 Score=30.07 Aligned_cols=196 Identities=7% Similarity=0.018 Sum_probs=109.7
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCC----HH---HHHHHH-HHHHhcCCHHHHHHHHHHHHHc----CCCCCHHhHHHHHH
Q 018743 147 GNSGNIEKMEKWYNEFNLMGVKAD----IQ---TLNILT-KSYGRAGMYDKMRSVMDFMQKR----FFFPTVVTYNIVIE 214 (351)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~----~~---~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 214 (351)
....++.+|..++.++...-..|+ .. .++.+- ......|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 446788889888888754322222 11 223222 2334568899999888776553 23445677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCccHH---HHHHHH--HHHHhcCCHhH--HHHHHHHhhhc-----CC-ccCHHhHHH
Q 018743 215 TFGKAGHIEKMEEYFKKMKHRGMKPNSI---TYCSLV--SAYSKAGLIMK--VDSILRQVENS-----DV-ILDTPFFNC 281 (351)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~g~~~~--a~~~~~~~~~~-----~~-~~~~~~~~~ 281 (351)
+..-.|++++|..+..+..+..-.-+.. .|..+. ..+...|+... ....+...... .. .+-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8889999999999988766542222222 233332 23445663322 23333332211 10 112234445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH----hcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743 282 IISAYGQAGDVEKMGELFLTMK----ERHCVPDNITF--ATMIQAYNALGMTEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 282 l~~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 345 (351)
+..++.+ ++.+..-...-. .....|-.... ..|+......|+.++|...+.++......+.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 5555554 333333222222 22122222222 2667888899999999999999988766653
No 388
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.13 E-value=12 Score=20.60 Aligned_cols=32 Identities=6% Similarity=0.103 Sum_probs=18.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMI 318 (351)
Q Consensus 287 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 318 (351)
.+.|-..++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455556666666666666655555555444
No 389
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.07 E-value=7.6 Score=18.44 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 018743 8 KQPEQASLLFEVMLSDGLKPSVDVYTALVS 37 (351)
Q Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 37 (351)
|+++.|..+|+++....+ -+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 456777777777776543 35666665554
No 390
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.39 E-value=7 Score=31.96 Aligned_cols=91 Identities=12% Similarity=-0.018 Sum_probs=46.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 018743 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE 297 (351)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 297 (351)
..|.++.|++.+...+..+ ++....|..=..++.+.+....|++-+......+.. ...-|-.--.+-...|+|++|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 3455666666666655553 444444544455555555666666555555544332 22222222333344566666666
Q ss_pred HHHHHHhcCCCCC
Q 018743 298 LFLTMKERHCVPD 310 (351)
Q Consensus 298 ~~~~~~~~~~~p~ 310 (351)
.+....+.++.+.
T Consensus 204 dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 204 DLALACKLDYDEA 216 (377)
T ss_pred HHHHHHhccccHH
Confidence 6666665554433
No 391
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=74.39 E-value=37 Score=26.11 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHHH
Q 018743 216 FGKAGHIEKMEEYFKKM 232 (351)
Q Consensus 216 ~~~~~~~~~a~~~~~~~ 232 (351)
+.....+++|++.+.-+
T Consensus 87 ~~~~Rt~~~ai~~YkLA 103 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLA 103 (214)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 44445566666655543
No 392
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=73.59 E-value=50 Score=27.20 Aligned_cols=81 Identities=4% Similarity=-0.012 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 018743 152 IEKMEKWYNEFNLMGV----KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227 (351)
Q Consensus 152 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 227 (351)
.+.|.+.|+.....+. ..++.....+.....+.|+.+.-..+++..... ++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 3455666666555311 234444555555556666655544444444432 345555666677776777777677
Q ss_pred HHHHHHHc
Q 018743 228 YFKKMKHR 235 (351)
Q Consensus 228 ~~~~~~~~ 235 (351)
+++.....
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 77766664
No 393
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.25 E-value=23 Score=31.59 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=38.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 018743 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296 (351)
Q Consensus 217 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 296 (351)
...|+...|...+.........-.......|.+...+.|....|..++.+....... .+-++-.+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-epl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-EPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-CchHHHhcchhHHHHhhhHHHH
Confidence 334555555555444433211111122333344444444444555555444433311 3334444555555555555555
Q ss_pred HHHHHHHh
Q 018743 297 ELFLTMKE 304 (351)
Q Consensus 297 ~~~~~~~~ 304 (351)
+.|+.+.+
T Consensus 697 ~~~~~a~~ 704 (886)
T KOG4507|consen 697 EAFRQALK 704 (886)
T ss_pred HHHHHHHh
Confidence 55555544
No 394
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=73.23 E-value=96 Score=30.30 Aligned_cols=127 Identities=11% Similarity=0.118 Sum_probs=61.2
Q ss_pred HHHHHhccCChHHHHHHHHHhhccCCC--CccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH----
Q 018743 35 LVSAYGQSGLLDEAFSTINDMKSVSDC--KPDVYTYSILIKSCT-KFHRFDLIEKILAEMSYLGIECSAVTYNTII---- 107 (351)
Q Consensus 35 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 107 (351)
.++.+...+++.+|+.+.++-+=.-++ .-+...|-.=+..+. +.++.+-.-.++..+.+.++. ...|....
T Consensus 700 ~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt--~tmY~~~~~~~~ 777 (928)
T PF04762_consen 700 GIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVT--KTMYKDTYPPSS 777 (928)
T ss_pred HHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccc--cccccccccccc
Confidence 456677889999998877664321111 112333333333333 334444444444444433221 11121111
Q ss_pred --------HHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCC--CHHHHHHHHHHHHhc
Q 018743 108 --------DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG--NIEKMEKWYNEFNLM 165 (351)
Q Consensus 108 --------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 165 (351)
......++....-+.+....+. ......-...++.+|++.+ ++++|+....++.+.
T Consensus 778 ~~~~~~~~~~~~~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 778 EAQPNSNSSTASSESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred ccccccccCCCccccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 1111223333333334333331 1222334556777888877 788888888887754
No 395
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.22 E-value=89 Score=29.95 Aligned_cols=187 Identities=10% Similarity=0.106 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHhHH--
Q 018743 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMG---VKADIQTLNILTKSYGRAGMY--DKMRSVMDFMQKRFFFPTVVTYN-- 210 (351)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 210 (351)
-|..|+..|...|+.++|+++|.+..+.. -..-...+..+++.+.+.+.. +-.++.-+.............+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 38889999999999999999999987632 111122344456666666554 44444443333322111111111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC--------CHhHHHHH-HH----Hh
Q 018743 211 ----------IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG--------LIMKVDSI-LR----QV 267 (351)
Q Consensus 211 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~-~~----~~ 267 (351)
..+-.+......+.+..+++.+....-.++....+.++..|...= +-+++.+. ++ .+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 112234566777888888888887665667777777777766431 11222222 11 11
Q ss_pred hh--cCCcc--------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------------CCCCCHHHHHHHHHHHHHc
Q 018743 268 EN--SDVIL--------DTPFFNCIISAYGQAGDVEKMGELFLTMKER-------------HCVPDNITFATMIQAYNAL 324 (351)
Q Consensus 268 ~~--~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------~~~p~~~~~~~l~~~~~~~ 324 (351)
.+ ....| ....|....-.+.+.|+.++|+.++-..... ...++...|..+++.|...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 11 11111 1223444444455888889988887765531 1234667777777777655
No 396
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=72.85 E-value=22 Score=22.78 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCC
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (351)
|....-.+...+...|+++.|++.+-.+.+...-.-+...-..++..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 66777777888888888888888777777643222233444555555444444
No 397
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=72.59 E-value=53 Score=27.03 Aligned_cols=136 Identities=12% Similarity=0.045 Sum_probs=68.9
Q ss_pred CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH----hcCCCCCH
Q 018743 96 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN----LMGVKADI 171 (351)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 171 (351)
+..|...++.+... +..+.++-.+..++..+..|-.--...+......|++.||.+.|.+.+.... ..|.+.|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34455444444332 2223344444444444333333334456667778888888888888776543 34556666
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 172 QTLNILTKS-YGRAGMYDKMRSVMDFMQKRFFFPT----VVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235 (351)
Q Consensus 172 ~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (351)
..+.+-+.. |....-..+-.+..+.+.+.|...+ ..+|..+- +....++.+|-.+|-+....
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 554433332 2222223333333444444443322 23444332 34456788888887776543
No 398
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=72.34 E-value=23 Score=27.95 Aligned_cols=79 Identities=9% Similarity=0.126 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHhHHHHHHHHHhhcCChHHHH
Q 018743 46 DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL----G-IECSAVTYNTIIDGYGKAKKFEEME 120 (351)
Q Consensus 46 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~ 120 (351)
+.|.+.|...... ..-...--.+..-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+
T Consensus 162 ~~A~~~f~~~~~~---R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 162 EKAYEQFKKYGQN---RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHhccc---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3555555554431 223333445667788889999999998887432 2 2345566677888888889888887
Q ss_pred HHHHHHH
Q 018743 121 SSFSAMV 127 (351)
Q Consensus 121 ~~~~~~~ 127 (351)
.+.-++.
T Consensus 239 ~~~leLl 245 (247)
T PF11817_consen 239 TTSLELL 245 (247)
T ss_pred HHHHHHh
Confidence 7665553
No 399
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.23 E-value=45 Score=26.04 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=13.0
Q ss_pred HHhccCChHHHHHHHHHhh
Q 018743 38 AYGQSGLLDEAFSTINDMK 56 (351)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~ 56 (351)
.+.-.+++++|-++|.+..
T Consensus 23 lfgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAA 41 (288)
T ss_pred ccCCCcchHHHHHHHHHHH
Confidence 4445567888888887654
No 400
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.80 E-value=1.5e+02 Score=31.94 Aligned_cols=153 Identities=10% Similarity=0.092 Sum_probs=93.6
Q ss_pred HHHHHHhccCChHHHHHHHHHhhccCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh
Q 018743 34 ALVSAYGQSGLLDEAFSTINDMKSVSDC-KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112 (351)
Q Consensus 34 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 112 (351)
.+..+-.+.+.+.+|+..+++-.....- .-...-|..+...|...++++...-+...-.. +...+. -+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 4455666778888999888884211000 11223344444588889998888877764211 222233 3334566
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 018743 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT-LNILTKSYGRAGMYDKMR 191 (351)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~ 191 (351)
.|+++.|...|+.+.+.+ ++...+++.++......|.++.++-..+-..... .+.... ++.-+.+--+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 799999999999998764 4446677877777777888887777666554432 222222 233344445667777766
Q ss_pred HHHH
Q 018743 192 SVMD 195 (351)
Q Consensus 192 ~~~~ 195 (351)
..+.
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 6655
No 401
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=71.79 E-value=32 Score=24.13 Aligned_cols=70 Identities=4% Similarity=-0.073 Sum_probs=45.5
Q ss_pred CCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743 203 FPTVVTYNIVIETFGKAG---HIEKMEEYFKKMKHRGMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273 (351)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 273 (351)
.++..+--.+..++.+.. +..+.+.+++++.+.. +|+ ......|.-++.+.++++++.++.+.+.+..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 345555555566666554 4566778888887632 332 234455666788888999999888888876543
No 402
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.53 E-value=84 Score=28.95 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=20.4
Q ss_pred HHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh
Q 018743 35 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK 77 (351)
Q Consensus 35 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 77 (351)
+|..|.+.|++++|.++....... .......+...+..+..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHh
Confidence 455566677777777766444432 22333334555555544
No 403
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.40 E-value=95 Score=29.47 Aligned_cols=49 Identities=12% Similarity=-0.076 Sum_probs=29.2
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHhhc
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPSV--DVYTALVSAYGQSGLLDEAFSTINDMKS 57 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 57 (351)
.|...|++++|+++-+.- |+. .++..-...+.+.+++..|-++|.++.+
T Consensus 367 ~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 367 TYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 355667777776654322 221 2333345567777888888888877743
No 404
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.23 E-value=24 Score=22.59 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=18.4
Q ss_pred CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
|.|...-..+...+...|++++|++.+-.+++.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 335555555666666666666666666666554
No 405
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=70.76 E-value=35 Score=24.27 Aligned_cols=62 Identities=8% Similarity=0.154 Sum_probs=32.4
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG 290 (351)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 290 (351)
+...+.+.|++++.. -..++..+...++.-.|..+++.+.+.++..+..+.-.-+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344455566555543 33455555555555666777777666655554444333333343333
No 406
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.24 E-value=56 Score=26.35 Aligned_cols=125 Identities=10% Similarity=0.060 Sum_probs=62.1
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcCCCCCCHh-------HHHHHHHHHhcCCCHHHHHHHHHHHH----hcCCCCCHHHH
Q 018743 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIF-------TLNSMISAYGNSGNIEKMEKWYNEFN----LMGVKADIQTL 174 (351)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~ 174 (351)
+.+-..+.+++++|+..+.++..+ |...+.. +...+...|.+.|+....-+...... ...-+......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 445566677788888888877766 3444433 34445566777776665555443322 11112223344
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHH-----hHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 175 NILTKSYGRA-GMYDKMRSVMDFMQKRFFFPTVV-----TYNIVIETFGKAGHIEKMEEYFKK 231 (351)
Q Consensus 175 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~ 231 (351)
.+++..+... ..++.-..+.....+........ .-..++..+.+.|.+.+|+.+...
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4444444332 33455555555444432221111 112344555666666666655443
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=70.03 E-value=13 Score=29.97 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018743 279 FNCIISAYGQAGDVEKMGELFLTMKERHCV 308 (351)
Q Consensus 279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 308 (351)
|+..|....+.||+++|+.+++++.+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 456666666666666666666666666554
No 408
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=69.44 E-value=64 Score=26.71 Aligned_cols=59 Identities=10% Similarity=0.283 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc---CCCccHHHH--HHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743 211 IVIETFGKAGHIEKMEEYFKKMKHR---GMKPNSITY--CSLVSAYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 269 (351)
.++...-+.++.++|+++++++.+. .-.|+...| ......+...||..++.+++.+..+
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444555666788888888777643 124454444 3445556667777777777777665
No 409
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=68.34 E-value=53 Score=25.38 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=53.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---cHHHH--HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHH
Q 018743 203 FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP---NSITY--CSLVSAYSKAGLIMKVDSILRQVENSDVILDTP 277 (351)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 277 (351)
.+...-+|.|+--|.-...+.+|.+.|.. ..|+.| +..++ ..-|......|++++|......+...-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 44555566666555555555556555544 333333 22222 345566677788888887777765443333433
Q ss_pred hHHHHHH----HHHhcCCHHHHHHHHHHHH
Q 018743 278 FFNCIIS----AYGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 278 ~~~~l~~----~~~~~g~~~~a~~~~~~~~ 303 (351)
.+-.|.. -..+.|..++|+++.+.=.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 3333322 2445666666666665433
No 410
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.10 E-value=22 Score=30.72 Aligned_cols=87 Identities=10% Similarity=-0.097 Sum_probs=36.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHH
Q 018743 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260 (351)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 260 (351)
+...+.++.|..++.++.+.... +...|..-..++.+.+++..|+.=+..+++.. +-....|-.=..++...+.+.+|
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHH
Confidence 33445555555555555543211 22222222344555555555555444444432 11112222222333344444444
Q ss_pred HHHHHHhhh
Q 018743 261 DSILRQVEN 269 (351)
Q Consensus 261 ~~~~~~~~~ 269 (351)
...|+....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 444444443
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=67.54 E-value=57 Score=25.78 Aligned_cols=19 Identities=16% Similarity=0.013 Sum_probs=9.5
Q ss_pred HHHHhccCChHHHHHHHHH
Q 018743 36 VSAYGQSGLLDEAFSTIND 54 (351)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~ 54 (351)
++++...|+...|+.-|+.
T Consensus 17 ~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3455555555555544443
No 412
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=67.52 E-value=58 Score=25.48 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 018743 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204 (351)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 204 (351)
.|.+.....++..|. .+++++|.+++.++.+.|..|
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 344544444444433 356666666666666666654
No 413
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.98 E-value=8.4 Score=26.69 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=23.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018743 287 GQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320 (351)
Q Consensus 287 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (351)
-..|.-.+|-.+|++|.+.|-+|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 345667788889999999888876 46766654
No 414
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=66.38 E-value=58 Score=26.57 Aligned_cols=71 Identities=6% Similarity=0.100 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH----------hcCCHhHH
Q 018743 191 RSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS----------KAGLIMKV 260 (351)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~a 260 (351)
.++++.+...++.|.-..+..+.-.+.+.=.+.+++.+|+.+.... .-|..|+..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4678888888899999888888888888888999999999987642 22555555544 34888888
Q ss_pred HHHHHH
Q 018743 261 DSILRQ 266 (351)
Q Consensus 261 ~~~~~~ 266 (351)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 877765
No 415
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.76 E-value=47 Score=30.29 Aligned_cols=90 Identities=10% Similarity=0.018 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHhH------HHHHHHHhhhcCCccCHHhHHHH
Q 018743 211 IVIETFGKAGHIEKMEEYFKKMKHRG--MKPNSITYCSLVSAYSKAGLIMK------VDSILRQVENSDVILDTPFFNCI 282 (351)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~------a~~~~~~~~~~~~~~~~~~~~~l 282 (351)
++.++|..+|++-.+..+++.+...+ -+.-...++..++...+.|.++- |...++... +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 68888888899888888888877542 22234567777888888886643 333333332 34466677666
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 018743 283 ISAYGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 283 ~~~~~~~g~~~~a~~~~~~~~ 303 (351)
+++-..--.-.-..-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 665544333333333444444
No 416
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.44 E-value=89 Score=26.90 Aligned_cols=213 Identities=12% Similarity=0.031 Sum_probs=100.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhH--HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHh--HHHHHHHHHhc
Q 018743 73 KSCTKFHRFDLIEKILAEMSYLGIECSAVT--YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF--TLNSMISAYGN 148 (351)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 148 (351)
...+..|+.+.+. .+.+.|..|+... ..+.+...+..|+.+-+.-++ +. |..|+.. ....-+...+.
T Consensus 7 ~~A~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll----~~-ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 7 CDAILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLM----KH-GAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH----hC-CCCccccCCCcccHHHHHHH
Confidence 3345667765544 4445677766543 234455556677765443333 33 2333322 12234555667
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHHhcCCHHHHH
Q 018743 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVT--YNIVIETFGKAGHIEKME 226 (351)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~ 226 (351)
.|+.+.+..+++.-....-..+..- ...+...+..|+.+- ++.+.+.|..|+... -.+.+...+..|+.+.+.
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~i----v~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLDI----MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred CCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 8888776665543211000011111 123333445666644 444445555443321 112334445667765544
Q ss_pred HHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHh---HHHHHHHHHhcCCHHHHHHHHH
Q 018743 227 EYFKKMKHRGMKPN---SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF---FNCIISAYGQAGDVEKMGELFL 300 (351)
Q Consensus 227 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~ 300 (351)
.+ .+.|..++ ..-.+.|.. .+..|+.+- .+.+.+.|..++... ...++...+..|+.+ +.+
T Consensus 153 ~L----l~~g~~~~~~d~~g~TpL~~-A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~ 219 (413)
T PHA02875 153 LL----IDHKACLDIEDCCGCTPLII-AMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVR 219 (413)
T ss_pred HH----HhcCCCCCCCCCCCCCHHHH-HHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHH
Confidence 43 44454333 222333333 344566543 444455555554322 123444445566654 455
Q ss_pred HHHhcCCCCCHH
Q 018743 301 TMKERHCVPDNI 312 (351)
Q Consensus 301 ~~~~~~~~p~~~ 312 (351)
.+.+.|..++..
T Consensus 220 ~Ll~~gad~n~~ 231 (413)
T PHA02875 220 LFIKRGADCNIM 231 (413)
T ss_pred HHHHCCcCcchH
Confidence 566677777643
No 417
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.30 E-value=69 Score=25.58 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=14.9
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 018743 239 PNSITYCSLVSAYSKAGLIMKVDSILRQ 266 (351)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 266 (351)
|.....+.++.+|.. +++.+.++++..
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 344455667766643 455555555544
No 418
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.23 E-value=5.5 Score=32.52 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=45.5
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 018743 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADI-QTLNILTKSYGRAGMYDKM 190 (351)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a 190 (351)
..|.++.|++.|...++.. ++....|..-.+++.+.+++..|++=+...... .||. .-|-.--.+..-.|++++|
T Consensus 126 n~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 3455666666666655542 444445555555566666666666655555442 2221 1222222333344566666
Q ss_pred HHHHHHHHHcCCCCC
Q 018743 191 RSVMDFMQKRFFFPT 205 (351)
Q Consensus 191 ~~~~~~~~~~~~~~~ 205 (351)
...+....+.+..+.
T Consensus 202 a~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 202 AHDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHHhccccHH
Confidence 666666555544433
No 419
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=64.89 E-value=69 Score=29.33 Aligned_cols=91 Identities=10% Similarity=0.097 Sum_probs=57.2
Q ss_pred HHHHHHhccCChHHHHHHHHHhhccC-CCCccHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCCHhHHHHH
Q 018743 34 ALVSAYGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTKFHRFD------LIEKILAEMSYLGIECSAVTYNTI 106 (351)
Q Consensus 34 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 106 (351)
+|+.+|..+|++.++.++++...... |-+-=...||..++...+.|.++ .+.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999988887532 11222456788888888888764 3444444444 44577788777
Q ss_pred HHHHhhcCChHHHHHHHHHHH
Q 018743 107 IDGYGKAKKFEEMESSFSAMV 127 (351)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~ 127 (351)
+.+-...-+-.-...++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766554333333344444443
No 420
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=64.59 E-value=25 Score=20.91 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=33.9
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 018743 273 ILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324 (351)
Q Consensus 273 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 324 (351)
.|....++.++...++..-.++++..+.++...|. .+..+|.--++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 34566777778877777778888888888877764 3556666555555543
No 421
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=64.42 E-value=19 Score=27.86 Aligned_cols=51 Identities=10% Similarity=0.007 Sum_probs=27.0
Q ss_pred hcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
+.++.+.+.+++.+....-+. ....|..+...--+.|+++.|.+.|++..+
T Consensus 7 ~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred ccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 445555555555555554333 344455555555555555555555555554
No 422
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.42 E-value=33 Score=28.19 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHH--HHHHHHHHhcCCHHHHHHH
Q 018743 10 PEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTY--SILIKSCTKFHRFDLIEKI 87 (351)
Q Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~ 87 (351)
..+|..+|...++.+ ..+|+. -+.+...|.. .+.+.+ + ..++.+| ..+.-+..+.|+..+|.+.
T Consensus 232 i~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~------~da~~r-R--Dtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 232 IVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQ------HEAQLR-R--DTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred HHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccc------hhhhhh-c--ccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 457778888777653 223331 1122222222 222333 2 3445444 3455566678999999999
Q ss_pred HHHHHHcCCCC-CHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 88 LAEMSYLGIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
++++.+.-.-. -..+...|+.++....-+.+...++.+.-+.
T Consensus 298 ~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 298 MRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99887652111 1223446888888887777777777766444
No 423
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.21 E-value=8.2 Score=26.75 Aligned_cols=16 Identities=13% Similarity=-0.002 Sum_probs=7.8
Q ss_pred HHHHHHHHHHcCCCCC
Q 018743 84 IEKILAEMSYLGIECS 99 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~ 99 (351)
|..+|+.|.+.|-+||
T Consensus 114 aY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 114 AYAVFRKMLERGNPPD 129 (140)
T ss_pred HHHHHHHHHhCCCCCc
Confidence 3445555555554444
No 424
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.55 E-value=1.6e+02 Score=29.22 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHhcCCCHHHHHHHH
Q 018743 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGNIEKMEKWY 159 (351)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 159 (351)
|..+++.+-+.+..+.+.++-...++.- +++ ..+++.+.+.....|.+-+|...+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l--~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENL--PDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 4556666666666666666666655542 222 224555566666666666665544
No 425
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=63.40 E-value=23 Score=19.42 Aligned_cols=25 Identities=12% Similarity=0.375 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHH
Q 018743 220 GHIEKMEEYFKKMKHRGMKPNSITY 244 (351)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~ 244 (351)
|-.+++...+++|.+.|+..+...+
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHH
Confidence 3333344444444444433333333
No 426
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.05 E-value=2.7e+02 Score=31.67 Aligned_cols=18 Identities=22% Similarity=0.095 Sum_probs=10.7
Q ss_pred cccCCCHHHHHHHHHHHH
Q 018743 4 LGKCKQPEQASLLFEVML 21 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~ 21 (351)
|.+.|.+++|..+|+...
T Consensus 2492 ~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2492 YEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHhhhHHHHhhHHHHHH
Confidence 345566666666666543
No 427
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.91 E-value=39 Score=21.52 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=6.3
Q ss_pred CCHhHHHHHHHHhh
Q 018743 255 GLIMKVDSILRQVE 268 (351)
Q Consensus 255 g~~~~a~~~~~~~~ 268 (351)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 428
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.76 E-value=45 Score=22.24 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230 (351)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 230 (351)
..++|..+.+.+...+. ....+--+-+..+.+.|++++| +.. ......||...|..+ +-.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~-~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLL-PQCHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHH-HTTS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHh-cccCCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 34555555555554432 1222222333445555666655 111 111123444444333 2235555555555555
Q ss_pred HHHHcC
Q 018743 231 KMKHRG 236 (351)
Q Consensus 231 ~~~~~~ 236 (351)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555444
No 429
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.30 E-value=1.4e+02 Score=27.62 Aligned_cols=331 Identities=11% Similarity=0.081 Sum_probs=160.0
Q ss_pred CCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHh--ccCChHHHHHHHHHhhcc--------CCCCccHHHHHHHHHH
Q 018743 8 KQPEQASLLFEVMLSDG---LKPSVDVYTALVSAYG--QSGLLDEAFSTINDMKSV--------SDCKPDVYTYSILIKS 74 (351)
Q Consensus 8 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~l~~~ 74 (351)
+++..|.+.++.+...- ..|...++..++.+.. +.+..+++++.++.+... ....|...+|..+++.
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 78899999998876642 3344555555555443 455566777777665321 0124556778877776
Q ss_pred HH--hcCCHHHHHHHHHHHHH-------cC----------CC-------------CCHhHH---------HHHHH--HHh
Q 018743 75 CT--KFHRFDLIEKILAEMSY-------LG----------IE-------------CSAVTY---------NTIID--GYG 111 (351)
Q Consensus 75 ~~--~~~~~~~a~~~~~~~~~-------~~----------~~-------------~~~~~~---------~~l~~--~~~ 111 (351)
++ ..|+++.+...++++.. .. ++ +....| .-++. ...
T Consensus 233 ~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~ 312 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNL 312 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHh
Confidence 54 56776666666555432 10 00 111111 11111 122
Q ss_pred hcCCh-------HHHHHHHHHHH-hcCCCCCC-H------hHHHHHHH---------HHhcCCCHHHHHHHHHHHHhcCC
Q 018743 112 KAKKF-------EEMESSFSAMV-ESGGCHPD-I------FTLNSMIS---------AYGNSGNIEKMEKWYNEFNLMGV 167 (351)
Q Consensus 112 ~~~~~-------~~a~~~~~~~~-~~~~~~~~-~------~~~~~l~~---------~~~~~~~~~~a~~~~~~~~~~~~ 167 (351)
..+.. +++++..++.. .....++. . ..|...+. ..+-.+++..|...++.+....-
T Consensus 313 ~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~ 392 (608)
T PF10345_consen 313 YKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQ 392 (608)
T ss_pred hccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHh
Confidence 33433 44444444444 11111111 0 11222222 22347889999999988875321
Q ss_pred -CCC-------HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCHHhHHHHHH--HHHh--cCCHHH--H
Q 018743 168 -KAD-------IQTLNILTKSYGRAGMYDKMRSVMD--------FMQKRFFFPTVVTYNIVIE--TFGK--AGHIEK--M 225 (351)
Q Consensus 168 -~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~--~~~~--~~~~~~--a 225 (351)
.|+ +..+....-.+...|+.+.|...|. .....+...+...+..+=. .+.. ....++ +
T Consensus 393 ~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~ 472 (608)
T PF10345_consen 393 RSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESEL 472 (608)
T ss_pred cCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHH
Confidence 111 2223333334456699999999997 4444444445544433211 1121 222223 6
Q ss_pred HHHHHHHHHc-CCCc--cHHHHHHH-HHHHHhcC--CHhHHHHHHHHhhhcC--CccCH----HhHHHHHHHHHhcCCHH
Q 018743 226 EEYFKKMKHR-GMKP--NSITYCSL-VSAYSKAG--LIMKVDSILRQVENSD--VILDT----PFFNCIISAYGQAGDVE 293 (351)
Q Consensus 226 ~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g--~~~~a~~~~~~~~~~~--~~~~~----~~~~~l~~~~~~~g~~~ 293 (351)
..+++.+... .-.| +..++..+ +.++.... ...++...+....+.- ...+. .+++.+..-+. .|+..
T Consensus 473 ~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~ 551 (608)
T PF10345_consen 473 NELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVG 551 (608)
T ss_pred HHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHH
Confidence 6666665432 1122 22333333 33333221 1224444444322111 11111 12332333333 68887
Q ss_pred HHHHHHHHHHhcCC-CC--CHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHH
Q 018743 294 KMGELFLTMKERHC-VP--DNITFA-----TMIQAYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 294 ~a~~~~~~~~~~~~-~p--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 339 (351)
+..+.......... .| ....|. .+...+...|+.++|.....+...
T Consensus 552 e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 552 EQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 76666655432211 12 334553 334457788999999998887754
No 430
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.48 E-value=94 Score=25.46 Aligned_cols=43 Identities=5% Similarity=0.159 Sum_probs=22.8
Q ss_pred HHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 50 STINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSY 93 (351)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 93 (351)
++++.+.+ .++.|.-.++.-+.-.+.+.=.+..++.+|+.+..
T Consensus 264 EL~~~L~~-~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEE-KEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHh-cCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 44555553 45555555544444444455555566666666554
No 431
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=60.41 E-value=33 Score=29.72 Aligned_cols=105 Identities=10% Similarity=-0.005 Sum_probs=65.8
Q ss_pred HHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhc
Q 018743 35 LVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113 (351)
Q Consensus 35 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (351)
-+..+...+.++.|+.++.+.++. .||.. .|..-..++.+.+++..|+.=+..+.+.. +.-...|..=..++.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhH
Confidence 345566677888888888888764 55443 34444467778888888887777777664 22333444444555566
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH
Q 018743 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146 (351)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (351)
+.+.+|+..|+.... +.|+..-....+.-|
T Consensus 86 ~~~~~A~~~l~~~~~---l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK---LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhh---cCcCcHHHHHHHHHH
Confidence 677777777777654 356655555555443
No 432
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.74 E-value=93 Score=25.18 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=38.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh----cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc----
Q 018743 77 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN---- 148 (351)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 148 (351)
..+++..+...+......+. ......+...|.. ..+..+|..+|....+.+ .......+...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g----~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG----LAEALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc----cHHHHHhHHHHHhcCCCc
Confidence 44556666666666655431 1223333333322 234555666666544332 22223333333333
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 018743 149 SGNIEKMEKWYNEFNLMG 166 (351)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~ 166 (351)
..|..+|..+++.....|
T Consensus 126 ~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 126 PLDLVKALKYYEKAAKLG 143 (292)
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 225555666665555555
No 433
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=59.19 E-value=69 Score=23.54 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=39.8
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHH
Q 018743 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294 (351)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 294 (351)
+...|++++..-. .++..+...++.-.|.++++.+.+.++.++..+...-+..+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4556766655433 4555555556667788888888877776666666666667777665543
No 434
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=59.14 E-value=86 Score=24.61 Aligned_cols=92 Identities=9% Similarity=0.091 Sum_probs=45.2
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-----------CCCCHHhHHHHH
Q 018743 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR-F-----------FFPTVVTYNIVI 213 (351)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~ 213 (351)
|.+..+.+-..++.+-....+++.+..-...++ +...|+..+|...++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444444444444445555555544444433 34567777666665543221 1 124444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 018743 214 ETFGKAGHIEKMEEYFKKMKHRGMKPN 240 (351)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~ 240 (351)
..|. .+++++|.+++.++.+.|+.|.
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 4332 3455666666666555555543
No 435
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.08 E-value=1.3e+02 Score=26.60 Aligned_cols=107 Identities=18% Similarity=0.063 Sum_probs=63.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHh---cCCCCC----HHH-HHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCH--
Q 018743 144 SAYGNSGNIEKMEKWYNEFNL---MGVKAD----IQT-LNILTKSYGRAGMYDKMRSVMDFMQK-------RFFFPTV-- 206 (351)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~----~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-- 206 (351)
+.+.-.|++.+|.+++....- .|...+ ... +|.+.....+.|.+..+..+|....+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 445567888888887765421 121111 112 24555555566666666666655442 3433322
Q ss_pred ---------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 018743 207 ---------VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252 (351)
Q Consensus 207 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 252 (351)
.+||. .-.+...|++-.|.+.|.+.... +..++..|-.+..+|.
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 33443 33566788888888888887765 3557788888888776
No 436
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=59.03 E-value=1.6e+02 Score=27.82 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS---CTKFHRFDLIEKILAEMSYLGIECSAVTYN 104 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 104 (351)
+...+..||..+.+.|++++....-..|.+.. +.+...|...+.. ....++..++..+|++....-..++ .|.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~--pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~--iw~ 187 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA--PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVP--IWE 187 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccch--HHH
Confidence 56677788888888998887777777776643 3445556555543 2344667777777777665432222 232
Q ss_pred HHHHH-------HhhcCChHHHHHHHHHHHhcCCCCCC
Q 018743 105 TIIDG-------YGKAKKFEEMESSFSAMVESGGCHPD 135 (351)
Q Consensus 105 ~l~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~ 135 (351)
-.+.. +...++++....+|.+.++.-|...+
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t 225 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT 225 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc
Confidence 22222 23346677777888877766554433
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=58.28 E-value=86 Score=24.33 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 018743 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP---TVVTY--NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241 (351)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 241 (351)
+.+...-++.|+--|.-...+.+|.+.|..- .++.| +..++ ..-|......|+.+.|++....+...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 4455555666655555555555565555443 23333 44443 34567778999999999999887654334443
Q ss_pred HHHHHHHH----HHHhcCCHhHHHHHHHHhh
Q 018743 242 ITYCSLVS----AYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 242 ~~~~~l~~----~~~~~g~~~~a~~~~~~~~ 268 (351)
..+-.|.. -..+.|..++|.++.+.=.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 33332222 2446677777777776543
No 438
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=58.10 E-value=38 Score=20.16 Aligned_cols=44 Identities=11% Similarity=-0.036 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110 (351)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (351)
..++.++...++..-.+.++..+.++.+.|. .+..+|.--++.+
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3344444444444444555555555544442 3344444333333
No 439
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.88 E-value=60 Score=22.43 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743 294 KMGELFLTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKM 337 (351)
Q Consensus 294 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (351)
.+.++|..|...|+--. +..|......+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77788888877765533 456667777777888888888887754
No 440
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=57.66 E-value=1.2e+02 Score=25.75 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFM 197 (351)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (351)
+-...++..+...+...|+.+.|.+++++.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445556666666666666666666665554
No 441
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=57.45 E-value=93 Score=24.48 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=37.5
Q ss_pred ccCChHHHHHHHHHhhccCCCCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhhcCChHH
Q 018743 41 QSGLLDEAFSTINDMKSVSDCKPDVYT-YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAV-TYNTIIDGYGKAKKFEE 118 (351)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 118 (351)
...+++.|+.-|.+.... .|++.+ |..-+-++.+..+++.+..--.+.++. .||.. ....+..+......+++
T Consensus 22 ~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred chhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence 344455555555444432 344422 334444455555555555444444433 23322 23334444455555555
Q ss_pred HHHHHHHH
Q 018743 119 MESSFSAM 126 (351)
Q Consensus 119 a~~~~~~~ 126 (351)
|+..+.+.
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 55555554
No 442
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.13 E-value=1.2e+02 Score=25.84 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=41.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 018743 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQ--TLNILTKSYG--RAGMYDKMRSVMDFMQKR 200 (351)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 200 (351)
+..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456889999999999999886 565554 4455555554 346788999999887664
No 443
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.63 E-value=38 Score=22.65 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 139 LNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
|..++..|...|..++|++++.++.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 4444444444444444444444443
No 444
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=56.48 E-value=96 Score=24.35 Aligned_cols=58 Identities=10% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 018743 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR-AGMYDKMRSVMDFMQ 198 (351)
Q Consensus 141 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 198 (351)
.++..+-+.|+++++..++.++...+...+..-.+.|..+|-. .|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3455566667777777777777766655565555655555532 244444454544443
No 445
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.14 E-value=1.1e+02 Score=24.87 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=61.9
Q ss_pred HHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHH
Q 018743 123 FSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL----MGVKADIQTLNI-LTKSYGRAGMYDKMRSVMDFM 197 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~ 197 (351)
+++..+.+|-..-..++..+...|++.+|.+.+.++..+..+ .|.+.|.....+ +.-.|....-.++.++..+.|
T Consensus 102 i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~ 181 (412)
T COG5187 102 IREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDI 181 (412)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 333333334444456777888888888888888777766543 455555443222 222333333456666677777
Q ss_pred HHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 198 QKRFFFPTV----VTYNIVIETFGKAGHIEKMEEYFKKMKHR 235 (351)
Q Consensus 198 ~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (351)
.+.|...+. .+|.-+ .+....++.+|-.++.+....
T Consensus 182 iEkGgDWeRrNRyK~Y~Gi--~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 182 IEKGGDWERRNRYKVYKGI--FKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHhCCCHHhhhhHHHHHHH--HHHHHHhhHHHHHHHHHHhcc
Confidence 777654332 233322 223345677777777766543
No 446
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=56.12 E-value=25 Score=17.42 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 018743 9 QPEQASLLFEVMLSDGLKPSVDVYTA 34 (351)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~ 34 (351)
.++.|..+|++.... .|++.+|..
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 456677777776654 355555543
No 447
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=56.12 E-value=1.1e+02 Score=25.02 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=12.1
Q ss_pred HhHHHHHHHHHhcCCHHHH
Q 018743 277 PFFNCIISAYGQAGDVEKM 295 (351)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~a 295 (351)
..|..|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3566677777777765544
No 448
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=55.88 E-value=44 Score=22.47 Aligned_cols=49 Identities=8% Similarity=0.137 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHH
Q 018743 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK 294 (351)
Q Consensus 246 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 294 (351)
.++..+...+..-.|.++++.+.+.++.++..+.-..+..+...|-+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3455555556666777788877777666666666566666666665443
No 449
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=54.95 E-value=46 Score=20.24 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh
Q 018743 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112 (351)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 112 (351)
+.+.|..++..+.... ..++..||++...+.+
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHH
Confidence 4455555555554433 4456666666555544
No 450
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.41 E-value=77 Score=22.60 Aligned_cols=81 Identities=10% Similarity=0.194 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743 174 LNILTKSYGRAGMYDKMRSVMDFMQKRF-----FFPTVVTYNIVIETFGKAGH-IEKMEEYFKKMKHRGMKPNSITYCSL 247 (351)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (351)
.+.++......++......+++.+.... -..+...|..++.+..+..- .-.+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3445555555555555555555542210 01234456666666544443 33445555666655566666666666
Q ss_pred HHHHHhc
Q 018743 248 VSAYSKA 254 (351)
Q Consensus 248 ~~~~~~~ 254 (351)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665543
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=54.12 E-value=1.4e+02 Score=25.67 Aligned_cols=59 Identities=14% Similarity=0.078 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcC------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 140 NSMISAYGNSGNIEKMEKWYNEFNLMG------V-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198 (351)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (351)
..+++.++-.||+..|+++++.+.-.. + .-...++-.+.-+|.-.+++.+|.+.|..+.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888887763211 1 1223456667777888888888888887754
No 452
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=54.02 E-value=41 Score=22.87 Aligned_cols=44 Identities=9% Similarity=0.119 Sum_probs=19.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 018743 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325 (351)
Q Consensus 282 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 325 (351)
++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444445555555555555444444444333344444444
No 453
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.02 E-value=1.2e+02 Score=24.67 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHhHHH-HHHHHHhhcCChHHHHHHHHHHHhcCC
Q 018743 63 PDVYTYSILIKSCTKFHRFDLIEKILAEMSY----LGIECSAVTYN-TIIDGYGKAKKFEEMESSFSAMVESGG 131 (351)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~ 131 (351)
--...+..+...|++.+|.+.+.++..+..+ .|...|..... .|.-.|....-.++.++..+.+.+++|
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 3345566666666666666666665554433 23333332211 122233344445555666666666543
No 454
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=52.51 E-value=78 Score=22.14 Aligned_cols=30 Identities=7% Similarity=-0.084 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVI 273 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 273 (351)
+..++--+...|+++.|..+.+.+.+.|..
T Consensus 51 l~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 51 LMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 334444556677777777777777766654
No 455
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.39 E-value=65 Score=21.14 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018743 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITF 314 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 314 (351)
..++.++++...+....+-....|.-.|.+.|+-+.|.+-|+.=.. .-|...+|
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~f 108 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVF 108 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhH
Confidence 3344555555444333344445566667777777777776665444 23444433
No 456
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=52.18 E-value=1.3e+02 Score=24.41 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHH
Q 018743 221 HIEKMEEYFKKMKHRGMKPNSITYC 245 (351)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (351)
+...|...+......+.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 5566666666666655444444443
No 457
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=52.03 E-value=1e+02 Score=23.29 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 176 ILTKSYGRAGMYDKMRSVMDFMQKR 200 (351)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (351)
.++..|.+..++.+..++++.+.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666677777766666543
No 458
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.02 E-value=1.7e+02 Score=25.92 Aligned_cols=253 Identities=9% Similarity=0.067 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh------ccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYG------QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82 (351)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (351)
+-+...++|++..+. .|+...|+..|..|. +...+...+.+++...+..+..++. +..............
T Consensus 297 k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~--~~~ys~~~l~~~t~~ 372 (568)
T KOG2396|consen 297 KESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECL--YKQYSVLLLCLNTLN 372 (568)
T ss_pred hHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccch--HHHHHHHHHHHhccc
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH-hcCCCHHHHHHHHHH
Q 018743 83 LIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY-GNSGNIEKMEKWYNE 161 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~ 161 (351)
.+...-..+...+...+...|..-+....+... .+.-+|.+....-...+-...+.....+. ...-+...-..++..
T Consensus 373 ~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 373 EAREVAVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISA 450 (568)
T ss_pred hHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHH
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCc
Q 018743 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG--HIEKMEEYFKKMKHRGMKP 239 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~ 239 (351)
+...+-+.....-+.++..+-+.|-..+|..++..+... ++|+...|..++..-.... +..-+..+|+.+... +..
T Consensus 451 ~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~ 528 (568)
T KOG2396|consen 451 LLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGA 528 (568)
T ss_pred HHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCC
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743 240 NSITYCSLVSAYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 269 (351)
++..|...+.--...|..+.+-.++.++.+
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHH
No 459
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=50.22 E-value=1e+02 Score=22.71 Aligned_cols=64 Identities=9% Similarity=0.045 Sum_probs=46.7
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH
Q 018743 195 DFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259 (351)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 259 (351)
+.+...|+.++..-. .++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|-+.+
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 335566777555433 4556666667778899999999998877788887777888888886654
No 460
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=50.13 E-value=1.5e+02 Score=24.64 Aligned_cols=62 Identities=5% Similarity=0.004 Sum_probs=34.5
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 018743 105 TIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166 (351)
Q Consensus 105 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 166 (351)
.|.-+-.+.|+..+|.+.|+.+.+...+..-......++.++....-+.++..++-+..+..
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34455556788888888888776552111111123456666666655555555555554433
No 461
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.11 E-value=1.2e+02 Score=23.75 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=37.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 018743 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-SGNIEKMEKWYNEFN 163 (351)
Q Consensus 104 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 163 (351)
..++....+.++++++...+.++... +...+..-.+.+..+|-. .|....+.+++..+.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~-~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEM-NPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHT-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 34677788899999999999999887 355666666666665522 344445555555543
No 462
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=49.91 E-value=30 Score=28.14 Aligned_cols=78 Identities=6% Similarity=0.068 Sum_probs=43.8
Q ss_pred CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018743 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNC-IISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316 (351)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 316 (351)
.-|+..|...+.--.+.+.+.+...++.+..+..+. |+..|-. ...-+...++++.+..+|.+....+. -++..|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~-~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS-RSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccCC-CCchHHHH
Confidence 345555666665555666666677777776665543 5555533 23345556677777777776665432 23444443
Q ss_pred H
Q 018743 317 M 317 (351)
Q Consensus 317 l 317 (351)
.
T Consensus 182 y 182 (435)
T COG5191 182 Y 182 (435)
T ss_pred H
Confidence 3
No 463
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=49.71 E-value=76 Score=21.14 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=8.6
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 018743 213 IETFGKAGHIEKMEEYFKK 231 (351)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~ 231 (351)
+..|...++.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444555555554444
No 464
>PRK09462 fur ferric uptake regulator; Provisional
Probab=49.50 E-value=94 Score=22.16 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=32.5
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 018743 197 MQKRFFFPTVVTYNIVIETFGKA-GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257 (351)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 257 (351)
+.+.|..++..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 444555544432 2334444433 34566777777776666555556555555666665544
No 465
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.73 E-value=88 Score=21.62 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 154 KMEKWYNEFNLMGVKA-DIQTLNILTKSYGRAGMYDKMRSVMDF 196 (351)
Q Consensus 154 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (351)
.+.++|..|...|+-. ....|......+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666655433 344566666666666777777666654
No 466
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.65 E-value=1.2e+02 Score=23.00 Aligned_cols=53 Identities=8% Similarity=0.015 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743 174 LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236 (351)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (351)
|..+...-++.-..+++.+.+- -..--+++..|-+.-++.+..++++.|.+..
T Consensus 110 FceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~ 162 (233)
T PF14669_consen 110 FCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQ 162 (233)
T ss_pred HHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666555544444333221 1111235556677778888888888887653
No 467
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=48.01 E-value=63 Score=21.67 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH
Q 018743 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259 (351)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 259 (351)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3455666667777888999999888767777777777788888776554
No 468
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=47.95 E-value=3.1e+02 Score=27.71 Aligned_cols=156 Identities=8% Similarity=-0.069 Sum_probs=92.0
Q ss_pred HHhcCCCHHHHHH------HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHcCCCCCHHhHHH
Q 018743 145 AYGNSGNIEKMEK------WYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFM-------QKRFFFPTVVTYNI 211 (351)
Q Consensus 145 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~ 211 (351)
.....|.+.++.+ ++...-..-.+.....|..+...+.+.|+.++|...-... ......-+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3444566666665 4442221112445567788888888999999888765432 22222223455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-------CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-----C--CccCHH
Q 018743 212 VIETFGKAGHIEKMEEYFKKMKHR-------GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS-----D--VILDTP 277 (351)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~ 277 (351)
+.......++...|...+.+.... ..||...+++.+-..+...++.+.|.+.++.+... + .-.+..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 655556666777777777665532 12344445555544455557888888888876542 1 122455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 018743 278 FFNCIISAYGQAGDVEKMGELFL 300 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~ 300 (351)
++..+.+.+...+++..|....+
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHh
Confidence 67777777777777777665544
No 469
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=47.74 E-value=38 Score=17.19 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=9.2
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 018743 316 TMIQAYNALGMTEAAQNL 333 (351)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~ 333 (351)
.+.-.+-..|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 334445555666666666
No 470
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.70 E-value=1.8e+02 Score=24.98 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhccCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCC
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSD--CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL---------GIE 97 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~ 97 (351)
...+.-+...|...|+++.|++.|.+... .- .+-....|..++..-.-.|+|.....+..+.... .++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~Rd-YCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARD-YCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhh-hhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 34677778888889999999998888543 11 0122345666666677778887777777666543 133
Q ss_pred CCHhHHHHHHHHHhhcCChHHHHHHHHHH
Q 018743 98 CSAVTYNTIIDGYGKAKKFEEMESSFSAM 126 (351)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 126 (351)
+....+..+.....+ +++.|.+.|-..
T Consensus 229 ~kl~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred cchHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 344444445444333 666666665544
No 471
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.22 E-value=1.9e+02 Score=24.93 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHH
Q 018743 139 LNSMISAYGNSGNIEKMEKWYNEF 162 (351)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~ 162 (351)
+.-+...|...|+++.|++.|.+.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhh
Confidence 444445555555555555555553
No 472
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.99 E-value=1.8e+02 Score=24.70 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=33.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 018743 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYG-RAGMYDKMRSVMDFMQK 199 (351)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 199 (351)
+..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++-..++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4556667777777777777766554335555555555544 45566666666655433
No 473
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.95 E-value=35 Score=27.69 Aligned_cols=52 Identities=6% Similarity=0.056 Sum_probs=37.9
Q ss_pred HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
.+.|+.++|..+|+......+. ++.....+....-..+++-+|-.+|-++..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 4678889999999988877665 566666666666666777777777776664
No 474
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=46.93 E-value=2.9e+02 Score=27.01 Aligned_cols=130 Identities=10% Similarity=0.049 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCC------
Q 018743 7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR------ 80 (351)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 80 (351)
..++++.++.-+...+ ..|...+...+.. +.....+|..+-.+|... -.+++.++.+.|.
T Consensus 1130 ~~ki~eIl~~A~~Vi~---~~D~eaL~~y~~~--k~D~r~da~klk~~me~q---------k~tli~AL~kKg~a~ak~e 1195 (1304)
T KOG1114|consen 1130 NKKIEEILSAADSVIQ---EIDTEALARYYAL--KEDTRPDAVKLKKKMEKQ---------KDTLIDALVKKGEAFAKYE 1195 (1304)
T ss_pred HHHHHHHHHHHHHHHH---hhcHHHHHHHHhc--ccCCcchHHHHHHHHHHH---------HHHHHHHHHHhhhHHhhhh
Q ss_pred ----------------HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 018743 81 ----------------FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144 (351)
Q Consensus 81 ----------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 144 (351)
.+.-.+.|.++.+.--..|..++..-...+...|++..+.+++.++.+..+-.++...|..++.
T Consensus 1196 ~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~e 1275 (1304)
T KOG1114|consen 1196 ALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAE 1275 (1304)
T ss_pred hhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Q ss_pred HHhcCC
Q 018743 145 AYGNSG 150 (351)
Q Consensus 145 ~~~~~~ 150 (351)
.+...|
T Consensus 1276 l~~~Lg 1281 (1304)
T KOG1114|consen 1276 LLENLG 1281 (1304)
T ss_pred HHHHhC
No 475
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=46.75 E-value=74 Score=20.21 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=19.4
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 192 SVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233 (351)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (351)
++|+.....|+..|+..|..++..+..+=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444444445555544444444444444444444443
No 476
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=46.41 E-value=23 Score=20.86 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=13.6
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCH
Q 018743 113 AKKFEEMESSFSAMVESGGCHPDI 136 (351)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~ 136 (351)
.-+++.|...|.++...+.++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 345666666666665554455543
No 477
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=46.40 E-value=76 Score=20.19 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 018743 86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVE 128 (351)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 128 (351)
++|+-....|+..|+..|..++..+...=-.+...++++.+..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666667777777777777666655566666666666644
No 478
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=45.99 E-value=1.7e+02 Score=25.29 Aligned_cols=197 Identities=13% Similarity=0.139 Sum_probs=98.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC-HhHHHHHHH
Q 018743 32 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL--GIECS-AVTYNTIID 108 (351)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~-~~~~~~l~~ 108 (351)
-+..+.++...++.+..-..|-...- -....-.+.-.|++...-.||.+...+.++.|.+. |-.|. ..| --+.-
T Consensus 204 i~~ql~~~~s~~dp~~va~~~g~s~~--y~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGF 280 (525)
T KOG3677|consen 204 ISIQLTASVSNKDPALVALIFGASQP--YANLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGF 280 (525)
T ss_pred HHHHHHHHhcCCChhhhhhhhccccH--HHhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhH
Confidence 34455667777777655544433221 11223445556677777788888888888877654 22232 233 34566
Q ss_pred HHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc-CCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH-----
Q 018743 109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-SGNIEKMEKWYNEFNLMG-VKADIQTLNILTKSY----- 181 (351)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~----- 181 (351)
+|...|++.+|.+.|..++-. +..+...+....-.+.. .+.++....++......- ...|......+...|
T Consensus 281 ayLmmrryadai~~F~niLly--Iqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d~ml 358 (525)
T KOG3677|consen 281 AYLMMRRYADAIRVFLNILLY--IQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGDKML 358 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcchhh
Confidence 777888888888888765421 11111111111111111 123333333333322211 112222333333322
Q ss_pred -HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 182 -GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233 (351)
Q Consensus 182 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (351)
..+|+.+.-..+|......-..|.+..|..++.-|.+..-.......+....
T Consensus 359 ~mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~kePl~~qlq~fld~v~ 411 (525)
T KOG3677|consen 359 PMQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHKEPLLQQLQVFLDEVS 411 (525)
T ss_pred hhhcCChHHHHHHHHHcCccccCCCCcccccccccccccHHHHHHHHHhHHHh
Confidence 1457777777777766666566666666666665554433333233333333
No 479
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.95 E-value=2.7e+02 Score=26.38 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=45.4
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCC
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKP---SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR 80 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (351)
+.+.+.+++|+.+.+..... .| -...+...|..+.-.|++++|-...-.|.. -+..-|..-+..+...++
T Consensus 366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhccccc
Confidence 34567777887766554432 33 345677778888888888888877777764 244555555555555554
Q ss_pred HH
Q 018743 81 FD 82 (351)
Q Consensus 81 ~~ 82 (351)
..
T Consensus 439 l~ 440 (846)
T KOG2066|consen 439 LT 440 (846)
T ss_pred cc
Confidence 43
No 480
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=45.37 E-value=90 Score=21.84 Aligned_cols=31 Identities=10% Similarity=-0.005 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCV 308 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 308 (351)
++..++--+...|+++.|+++.+-++++|.+
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 4455555677889999999999999888855
No 481
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.34 E-value=1.8e+02 Score=24.20 Aligned_cols=25 Identities=8% Similarity=-0.015 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHH
Q 018743 102 TYNTIIDGYGKAKKFEEMESSFSAM 126 (351)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~ 126 (351)
.+......|++.|+-+.|++.+.+.
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t 130 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKT 130 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444455555555555555555444
No 482
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.13 E-value=2.7e+02 Score=26.30 Aligned_cols=151 Identities=9% Similarity=0.086 Sum_probs=87.6
Q ss_pred HHHHhccCChHHHHHHHHHhhccCCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh
Q 018743 36 VSAYGQSGLLDEAFSTINDMKSVSDCKP---DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112 (351)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 112 (351)
++-+.+.+.+++|++..+.... ..| -.......+..+...|++++|-...-.|... +..-|..-+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 4556778889999988877654 344 2445777788888889999888888777643 55556555666666
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh---------cC-------CCCCHHHHHH
Q 018743 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL---------MG-------VKADIQTLNI 176 (351)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~-------~~~~~~~~~~ 176 (351)
.++......++ ..+....+...|..++..+.. .+...-.++..+... .. ..-+......
T Consensus 436 ~~~l~~Ia~~l----Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~ 510 (846)
T KOG2066|consen 436 LDQLTDIAPYL----PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEV 510 (846)
T ss_pred ccccchhhccC----CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHH
Confidence 55544332221 121122344556666666555 332222222221100 00 0112233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 018743 177 LTKSYGRAGMYDKMRSVMDFMQ 198 (351)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~ 198 (351)
|+..|...+++..|..++-...
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 8888888899999988776554
No 483
>PRK09462 fur ferric uptake regulator; Provisional
Probab=44.81 E-value=1.1e+02 Score=21.75 Aligned_cols=63 Identities=10% Similarity=0.197 Sum_probs=38.0
Q ss_pred HHHHHcCCCccHHHHHHHHHHHHhc-CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHH
Q 018743 230 KKMKHRGMKPNSITYCSLVSAYSKA-GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVE 293 (351)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 293 (351)
+.+.+.|++++.. -..++..+... +..-.|.++++.+.+.++..+..|.-.-+..+...|-+.
T Consensus 6 ~~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455566666543 33344444443 456778888888887776666666555566666666543
No 484
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=44.34 E-value=1.8e+02 Score=23.94 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=13.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHH
Q 018743 206 VVTYNIVIETFGKAGHIEKME 226 (351)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~ 226 (351)
..+|..++.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 445666777777777665443
No 485
>PRK09857 putative transposase; Provisional
Probab=43.96 E-value=1.8e+02 Score=23.82 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 018743 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238 (351)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 238 (351)
.++......++.++..++++.+.+. .++.....-++..-+.+.|.-+++.++..+|...|+.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333334444444444444444333 1112222223334444444444444444444444443
No 486
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=43.87 E-value=1.1e+02 Score=21.17 Aligned_cols=51 Identities=14% Similarity=0.055 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCC
Q 018743 9 QPEQASLLFEVMLSDG-LKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDC 61 (351)
Q Consensus 9 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 61 (351)
++.+|+.-+++..... ..++......+|..+--. ++-++++++......|+
T Consensus 5 ~~~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE~t--~ElaWK~lK~~L~~~G~ 56 (124)
T PF08780_consen 5 NFKKALSRLEEALEKYEDPLSELERDGVIQRFEFT--FELAWKTLKDYLEYEGI 56 (124)
T ss_dssp HHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCC
Confidence 4566777777766641 122445555556554433 56666666665554454
No 487
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=43.68 E-value=2.5e+02 Score=25.48 Aligned_cols=153 Identities=15% Similarity=0.094 Sum_probs=79.2
Q ss_pred HHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChH
Q 018743 38 AYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFE 117 (351)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 117 (351)
.+...|++++|+...+......+...-..+-..++..+ ...........|++..+.+ |.-..+...++..+ ....
T Consensus 318 lLl~~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~-d~~~~~~l~~~~e~~~~~~-P~~~~~le~l~~~~---~~~~ 392 (547)
T PF14929_consen 318 LLLIGGRLKEALNELEKFCISSTCALPIRLRAHLLEYF-DQNNSSVLSSCLEDCLKKD-PTMSYSLERLILLH---QKDY 392 (547)
T ss_pred EEeccccHHHHHHHHHHhccCCCccchHHHHHHHHHHh-CcccHHHHHHHHHHHhcCC-CcHHHHHHHHHhhh---hhHH
Confidence 55567888999888887664221111122222233322 2335667777788887664 21222222223222 2255
Q ss_pred HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc-----C---CCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHH
Q 018743 118 EMESSFSAMVESGGCHPDIFTLNSMISAYGN-----S---GNIEKMEKWYNEFNLM-GVKADIQTLNILTKSYGRAGMYD 188 (351)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~---~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 188 (351)
.+.++++-+.-.-...|...+|.-+...+.+ . .+...+.+++=.+... +-..+...|..+.....+....+
T Consensus 393 ~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~~~ 472 (547)
T PF14929_consen 393 SAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFDLD 472 (547)
T ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhhhh
Confidence 6667776542222345777788877777776 2 2344555544444443 34456667766665555444433
Q ss_pred HHHHHHH
Q 018743 189 KMRSVMD 195 (351)
Q Consensus 189 ~a~~~~~ 195 (351)
-..+.++
T Consensus 473 ~~~~~W~ 479 (547)
T PF14929_consen 473 WVREEWR 479 (547)
T ss_pred chHHHHH
Confidence 3333333
No 488
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=43.59 E-value=2.3e+02 Score=24.86 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH 306 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 306 (351)
...|+.-|...|+..+|.+.++++--.-+. ....+.+++.+.-+.|+-...+.+++..-..|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 456777888888888888888876533222 45567788888888888777777777665554
No 489
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=43.04 E-value=2.1e+02 Score=24.44 Aligned_cols=192 Identities=8% Similarity=-0.012 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHH----h
Q 018743 7 CKQPEQASLLFEVMLSD-----GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCT----K 77 (351)
Q Consensus 7 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 77 (351)
.++++.|++-+-...+. +...+..++..++..|...++|+.--+....+.+.+|- .-.+...++.-+. .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq--lk~ai~~Mvq~~~~y~~~ 102 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ--LKQAIQSMVQQAMTYIDG 102 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHhccC
Confidence 45555555544333221 23345667777788888888887666555554442221 1112222222221 1
Q ss_pred cCCHHHHHHHHHHHHHc--C-C--CC-CHhHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCC-CCCHhH--HHHHHHHHh
Q 018743 78 FHRFDLIEKILAEMSYL--G-I--EC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVES-GGC-HPDIFT--LNSMISAYG 147 (351)
Q Consensus 78 ~~~~~~a~~~~~~~~~~--~-~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~--~~~l~~~~~ 147 (351)
..+.+.-..+.+.+..- | + .. .+..-..|...+-..|+.++|..++.+..-. .|. ...... ..--++.|.
T Consensus 103 ~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG 182 (439)
T KOG1498|consen 103 TPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCL 182 (439)
T ss_pred CCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 12223333333322211 1 0 00 1112233555666778888887777665211 110 000000 111245566
Q ss_pred cCCCHHHHHHHHHHHHhcCC-CCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 148 NSGNIEKMEKWYNEFNLMGV-KADI-----QTLNILTKSYGRAGMYDKMRSVMDFMQKR 200 (351)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (351)
..+|+-.|.-+-..+...-+ .|+. ..|..++......+.+=.+.+.++.+-..
T Consensus 183 ~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 183 LRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 66777666655555443222 1222 23566666666666666666666665443
No 490
>PHA00425 DNA packaging protein, small subunit
Probab=42.71 E-value=81 Score=19.48 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHH
Q 018743 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS 74 (351)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 74 (351)
+.+.|.+++..+.... +.++..||++-..+.+.+ +. ...+.||..+..-+..+
T Consensus 14 DTE~a~~mL~DL~dde-kRtPQLYnAIgKlL~RHk-F~-----------isKl~pD~~iLg~la~~ 66 (88)
T PHA00425 14 DTEMAQRMLADLKDDE-KRTPQLYNAIGKLLDRHK-FQ-----------ISKLQPDENILGGLAAA 66 (88)
T ss_pred hHHHHHHHHHHhcCcc-ccChHHHHHHHHHHHHhc-cc-----------ccccCCcHHHHHHHHHH
Confidence 4566777777776554 448889998877766543 11 13457887766555444
No 491
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.66 E-value=2.6e+02 Score=25.38 Aligned_cols=25 Identities=4% Similarity=-0.106 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHH
Q 018743 102 TYNTIIDGYGKAKKFEEMESSFSAM 126 (351)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~ 126 (351)
+-..+-..|...|++++|+++--..
T Consensus 61 aaL~~SKvYy~LgeY~~Ai~yAL~a 85 (926)
T COG5116 61 AALCLSKVYYVLGEYQQAIEYALRA 85 (926)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 4445556777778888887765554
No 492
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=42.65 E-value=3.8e+02 Score=27.18 Aligned_cols=103 Identities=10% Similarity=-0.057 Sum_probs=50.8
Q ss_pred CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC----C--CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc-----
Q 018743 97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG----G--CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM----- 165 (351)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 165 (351)
++....|..+...+.+.++.++|+..-.+..-.. | .+.+...|..+...+...+....|...+.+....
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 4455666667777777777777766544331100 1 1122334444444444555555555555544321
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 166 G--VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQK 199 (351)
Q Consensus 166 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (351)
| .+|...+++.+-..+...++++.|.+.++....
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 223333344444444444666666666655543
No 493
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=42.12 E-value=1e+02 Score=20.49 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=8.6
Q ss_pred HHHHhhcCChHHHHHHHHHH
Q 018743 107 IDGYGKAKKFEEMESSFSAM 126 (351)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~ 126 (351)
+.-|...++.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444554444444443
No 494
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.09 E-value=2.3e+02 Score=24.52 Aligned_cols=95 Identities=12% Similarity=0.198 Sum_probs=59.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHhhcc------CCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 018743 33 TALVSAYGQSGLLDEAFSTINDMKSV------SDCKPD-----VYTYSILIKSCTKFHRFDLIEKILAEMSYL------G 95 (351)
Q Consensus 33 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 95 (351)
..++..+....++.+.++..+..... .|..|- -.+.-.|++..+-.||+..|+++++.+.-. .
T Consensus 79 LnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~ 158 (404)
T PF10255_consen 79 LNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTK 158 (404)
T ss_pred HHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhcc
Confidence 33455566666666655555442110 111111 123455677788899999999998876321 1
Q ss_pred C-CCCHhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 018743 96 I-ECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127 (351)
Q Consensus 96 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 127 (351)
+ .-...++-.+.-+|...+++.+|.+.|..+.
T Consensus 159 V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 159 VPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred CcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1234566677888999999999999998874
No 495
>PRK09857 putative transposase; Provisional
Probab=41.92 E-value=1.9e+02 Score=23.63 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 310 (351)
+..++......++.++...+++.+.+.... .......+..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~-~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPK-HKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334444444555555555666555544222 333344555666666666667777777777776544
No 496
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.85 E-value=69 Score=21.74 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=18.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 018743 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255 (351)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 255 (351)
++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 33344444444445555555554444444444333344444433
No 497
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=40.96 E-value=2.4e+02 Score=24.41 Aligned_cols=62 Identities=8% Similarity=-0.065 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 102 TYNTIIDGYGKAKKFEEMESSFSAMVES-GGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
+...|++...-.|++....+.++.+.+. .|..|...+--.+.-+|.-.|++.+|.+.|-...
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888888888877543 1233333222345566777788899988887664
No 498
>PHA02875 ankyrin repeat protein; Provisional
Probab=40.84 E-value=2.4e+02 Score=24.33 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=5.2
Q ss_pred HHHhcCCHHHHH
Q 018743 74 SCTKFHRFDLIE 85 (351)
Q Consensus 74 ~~~~~~~~~~a~ 85 (351)
..+..|+.+.+.
T Consensus 74 ~A~~~g~~~~v~ 85 (413)
T PHA02875 74 DAVEEGDVKAVE 85 (413)
T ss_pred HHHHCCCHHHHH
Confidence 333445544433
No 499
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.76 E-value=1.5e+02 Score=24.72 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred cCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHH
Q 018743 254 AGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV---PDNITFATMIQAYNALGMTEAA 330 (351)
Q Consensus 254 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A 330 (351)
.++...-..+--...+..+.-....|..=..-|.+..++..|...|.+-++.... .+...|+.-..+-...|++..|
T Consensus 59 ~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~ 138 (390)
T KOG0551|consen 59 NPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSA 138 (390)
T ss_pred CccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhcccCCCCccC
Q 018743 331 QNLENKMIAMKENSGKKLIQ 350 (351)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~ 350 (351)
+.-..+.+..+|.....+|+
T Consensus 139 l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 139 LNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHhcCcchhhhhhh
No 500
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.74 E-value=1.7e+02 Score=22.76 Aligned_cols=96 Identities=11% Similarity=0.064 Sum_probs=46.3
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018743 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190 (351)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (351)
...+++++|.+.+..- .+.|+- -..++.++...|+.+.|..+++...-.. .+......++.. ..++...+|
T Consensus 89 LD~~~~~~A~~~L~~p----s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 89 LDHGDFEEALELLSHP----SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred hChHhHHHHHHHhCCC----CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHH
Confidence 3446666666665322 122221 2235556666677777777766643211 122222333333 455677777
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 018743 191 RSVMDFMQKRFFFPTVVTYNIVIETFGK 218 (351)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (351)
....+...+.. ....+..++..+..
T Consensus 160 f~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 160 FSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 66665544421 13445555555543
Done!