Query 018743
Match_columns 351
No_of_seqs 729 out of 1391
Neff 12.2
Searched_HMMs 29240
Date Mon Mar 25 05:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-34 6.6E-39 255.0 36.1 333 3-346 209-585 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.6E-34 1.9E-38 252.1 38.3 333 4-344 127-549 (597)
3 4g26_A Pentatricopeptide repea 100.0 6E-34 2.1E-38 242.6 25.8 185 139-323 29-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.3E-33 4.6E-38 240.5 25.8 206 12-219 8-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 6.6E-31 2.2E-35 220.2 38.3 328 7-345 46-373 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 5.2E-30 1.8E-34 214.7 40.5 330 4-344 9-338 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 6.3E-27 2.2E-31 199.8 37.5 324 11-345 9-363 (450)
8 2y4t_A DNAJ homolog subfamily 100.0 2.3E-26 7.7E-31 196.4 38.3 330 3-344 35-414 (450)
9 2gw1_A Mitochondrial precursor 100.0 9.6E-26 3.3E-30 195.8 33.6 335 3-344 15-482 (514)
10 3ieg_A DNAJ homolog subfamily 100.0 5.5E-24 1.9E-28 176.0 39.2 307 28-344 2-339 (359)
11 3ieg_A DNAJ homolog subfamily 99.9 3.4E-23 1.1E-27 171.3 38.8 310 3-323 12-352 (359)
12 3fp2_A TPR repeat-containing p 99.9 6E-24 2.1E-28 185.5 35.9 332 3-345 34-496 (537)
13 2gw1_A Mitochondrial precursor 99.9 4.9E-23 1.7E-27 178.7 33.7 310 28-346 5-407 (514)
14 3hym_B Cell division cycle pro 99.9 4.9E-23 1.7E-27 168.4 31.0 294 26-328 19-322 (330)
15 1fch_A Peroxisomal targeting s 99.9 2.1E-23 7.3E-28 173.2 26.8 295 39-339 35-358 (368)
16 3hym_B Cell division cycle pro 99.9 2.2E-22 7.4E-27 164.5 30.5 277 62-345 19-304 (330)
17 3fp2_A TPR repeat-containing p 99.9 2.4E-21 8.4E-26 169.0 35.2 311 28-348 24-415 (537)
18 1fch_A Peroxisomal targeting s 99.9 2.3E-22 8E-27 167.0 25.8 293 4-303 35-357 (368)
19 4eqf_A PEX5-related protein; a 99.9 1.3E-22 4.5E-27 168.3 23.3 266 64-336 64-352 (365)
20 3cv0_A Peroxisome targeting si 99.9 4.1E-21 1.4E-25 156.7 26.9 282 31-342 23-317 (327)
21 4eqf_A PEX5-related protein; a 99.9 3.2E-21 1.1E-25 159.9 25.9 266 28-301 64-352 (365)
22 3cv0_A Peroxisome targeting si 99.9 6.1E-21 2.1E-25 155.7 25.3 269 4-302 31-312 (327)
23 3mkr_A Coatomer subunit epsilo 99.9 5.9E-20 2E-24 146.7 27.2 277 36-334 6-288 (291)
24 3mkr_A Coatomer subunit epsilo 99.9 2.4E-19 8.1E-24 143.2 29.6 253 5-273 10-267 (291)
25 2xm6_A Protein corresponding t 99.9 2.6E-17 8.8E-22 141.8 43.3 307 7-342 92-434 (490)
26 2xm6_A Protein corresponding t 99.9 7.8E-17 2.7E-21 138.8 43.9 306 7-341 56-397 (490)
27 4g1t_A Interferon-induced prot 99.9 6.9E-19 2.4E-23 151.1 30.6 338 4-347 61-466 (472)
28 1b89_A Protein (clathrin heavy 99.9 5.1E-21 1.7E-25 156.4 14.3 284 4-333 13-304 (449)
29 2ooe_A Cleavage stimulation fa 99.8 6.4E-17 2.2E-21 140.7 38.3 329 5-343 23-457 (530)
30 3uq3_A Heat shock protein STI1 99.8 1.2E-17 4E-22 131.4 26.4 227 66-341 6-237 (258)
31 3uq3_A Heat shock protein STI1 99.8 1.9E-17 6.5E-22 130.2 26.0 227 28-270 4-236 (258)
32 2pl2_A Hypothetical conserved 99.8 7.3E-18 2.5E-22 128.8 22.7 208 98-336 3-210 (217)
33 2ooe_A Cleavage stimulation fa 99.8 4.2E-16 1.4E-20 135.6 36.7 333 4-343 56-495 (530)
34 4g1t_A Interferon-induced prot 99.8 4.9E-16 1.7E-20 133.3 36.4 312 26-343 48-404 (472)
35 3u4t_A TPR repeat-containing p 99.8 2.7E-17 9.4E-22 130.4 25.6 193 70-267 8-205 (272)
36 2pl2_A Hypothetical conserved 99.8 1.5E-17 5.1E-22 127.1 22.7 174 168-346 2-186 (217)
37 3spa_A Mtrpol, DNA-directed RN 99.8 4.7E-20 1.6E-24 162.8 8.8 116 171-286 127-246 (1134)
38 1b89_A Protein (clathrin heavy 99.8 7.8E-19 2.7E-23 143.6 13.8 260 29-335 6-267 (449)
39 1ouv_A Conserved hypothetical 99.8 1.5E-15 5.3E-20 120.4 31.4 223 64-305 5-251 (273)
40 2h6f_A Protein farnesyltransfe 99.8 1.2E-16 4E-21 131.9 25.1 236 100-343 97-351 (382)
41 3u4t_A TPR repeat-containing p 99.8 2.9E-16 1E-20 124.5 26.7 237 103-344 6-254 (272)
42 2h6f_A Protein farnesyltransfe 99.8 3E-16 1E-20 129.5 27.2 217 29-254 97-322 (382)
43 2ho1_A Type 4 fimbrial biogene 99.8 3.1E-16 1.1E-20 122.8 26.3 201 100-305 37-238 (252)
44 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.1E-17 7E-22 131.3 19.2 248 41-334 17-269 (275)
45 3spa_A Mtrpol, DNA-directed RN 99.8 5.1E-19 1.7E-23 156.3 10.6 117 136-252 127-247 (1134)
46 2q7f_A YRRB protein; TPR, prot 99.8 8.7E-17 3E-21 125.2 22.0 201 99-305 22-222 (243)
47 2vq2_A PILW, putative fimbrial 99.8 6.6E-16 2.3E-20 118.7 26.5 202 99-304 7-210 (225)
48 2ho1_A Type 4 fimbrial biogene 99.8 9.3E-16 3.2E-20 120.1 27.7 199 67-270 39-238 (252)
49 1xnf_A Lipoprotein NLPI; TPR, 99.8 5.1E-17 1.8E-21 129.0 20.7 225 3-235 14-244 (275)
50 2vq2_A PILW, putative fimbrial 99.8 1.1E-15 3.6E-20 117.5 26.5 203 28-234 7-210 (225)
51 2q7f_A YRRB protein; TPR, prot 99.8 1.6E-16 5.5E-21 123.7 21.8 199 68-272 26-224 (243)
52 1ouv_A Conserved hypothetical 99.8 1.2E-14 4.2E-19 115.2 31.8 224 28-271 5-252 (273)
53 3sf4_A G-protein-signaling mod 99.8 1.2E-16 4.2E-21 134.2 21.0 302 26-327 6-363 (406)
54 4a1s_A PINS, partner of inscut 99.7 2.2E-16 7.4E-21 133.0 21.0 275 67-342 50-374 (411)
55 1xi4_A Clathrin heavy chain; a 99.7 1.4E-14 4.7E-19 132.6 33.1 296 2-342 993-1311(1630)
56 3sf4_A G-protein-signaling mod 99.7 6.2E-16 2.1E-20 129.9 23.2 282 62-344 6-340 (406)
57 2ond_A Cleavage stimulation fa 99.7 1.1E-14 3.8E-19 117.5 29.5 217 82-304 33-269 (308)
58 3ro2_A PINS homolog, G-protein 99.7 6E-16 2E-20 126.4 21.8 158 187-344 159-336 (338)
59 3ro2_A PINS homolog, G-protein 99.7 1.2E-15 4.3E-20 124.5 21.6 277 29-305 5-332 (338)
60 4a1s_A PINS, partner of inscut 99.7 1.2E-15 4.1E-20 128.5 21.6 277 29-305 48-372 (411)
61 3vtx_A MAMA; tetratricopeptide 99.7 8.5E-15 2.9E-19 108.8 23.4 171 170-344 4-174 (184)
62 3ulq_A Response regulator aspa 99.7 2.8E-15 9.5E-20 125.0 22.7 300 39-343 22-371 (383)
63 3ulq_A Response regulator aspa 99.7 7.7E-15 2.6E-19 122.3 25.0 296 4-304 22-367 (383)
64 1xi4_A Clathrin heavy chain; a 99.7 9.4E-14 3.2E-18 127.2 32.9 286 4-332 1059-1376(1630)
65 3e4b_A ALGK; tetratricopeptide 99.7 1.9E-15 6.4E-20 128.4 18.2 308 4-343 13-390 (452)
66 2ond_A Cleavage stimulation fa 99.7 2.5E-13 8.6E-18 109.5 29.8 239 28-272 7-272 (308)
67 3nf1_A KLC 1, kinesin light ch 99.7 1.1E-15 3.8E-20 123.5 15.8 251 64-343 26-310 (311)
68 4abn_A Tetratricopeptide repea 99.7 9.7E-15 3.3E-19 124.8 22.0 212 116-334 84-315 (474)
69 4abn_A Tetratricopeptide repea 99.7 1E-14 3.4E-19 124.7 22.1 213 81-301 84-317 (474)
70 3e4b_A ALGK; tetratricopeptide 99.7 3.8E-14 1.3E-18 120.4 25.4 310 5-344 46-425 (452)
71 3nf1_A KLC 1, kinesin light ch 99.7 2.3E-15 7.9E-20 121.6 16.8 248 28-304 26-306 (311)
72 3vtx_A MAMA; tetratricopeptide 99.7 5.5E-14 1.9E-18 104.4 22.9 166 99-269 4-169 (184)
73 1hz4_A MALT regulatory protein 99.6 9E-13 3.1E-17 109.4 30.1 303 31-342 16-351 (373)
74 3q15_A PSP28, response regulat 99.6 2.4E-13 8.2E-18 113.1 25.9 313 26-341 7-366 (378)
75 3as5_A MAMA; tetratricopeptide 99.6 1.6E-13 5.6E-18 101.7 21.2 171 172-346 9-179 (186)
76 3q15_A PSP28, response regulat 99.6 6.5E-13 2.2E-17 110.5 24.7 296 5-304 23-364 (378)
77 4i17_A Hypothetical protein; T 99.6 8.1E-13 2.8E-17 101.7 21.2 204 133-346 4-215 (228)
78 4gyw_A UDP-N-acetylglucosamine 99.6 3.2E-13 1.1E-17 120.1 21.3 165 172-340 10-174 (723)
79 1hz4_A MALT regulatory protein 99.6 3E-12 1E-16 106.2 25.9 267 4-270 24-322 (373)
80 3as5_A MAMA; tetratricopeptide 99.6 1.5E-12 5.3E-17 96.4 21.0 165 29-199 8-172 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.6 7.1E-13 2.4E-17 117.9 21.7 163 137-303 10-172 (723)
82 4i17_A Hypothetical protein; T 99.5 5.4E-12 1.8E-16 97.1 22.2 193 101-305 8-209 (228)
83 4e6h_A MRNA 3'-END-processing 99.5 1.5E-10 5.2E-15 102.0 33.8 209 135-345 342-575 (679)
84 3edt_B KLC 2, kinesin light ch 99.5 4.5E-13 1.5E-17 106.5 16.2 230 5-235 12-281 (283)
85 3edt_B KLC 2, kinesin light ch 99.5 5.9E-13 2E-17 105.8 16.8 229 111-340 12-281 (283)
86 4e6h_A MRNA 3'-END-processing 99.5 3.5E-10 1.2E-14 99.7 34.9 333 6-343 78-536 (679)
87 3mv2_B Coatomer subunit epsilo 99.5 5.9E-11 2E-15 93.3 25.1 243 36-305 20-282 (310)
88 2fo7_A Synthetic consensus TPR 99.4 2.1E-11 7.2E-16 85.1 18.1 133 208-343 3-135 (136)
89 3mv2_B Coatomer subunit epsilo 99.4 1.2E-10 4E-15 91.6 23.3 183 155-344 85-286 (310)
90 3qky_A Outer membrane assembly 99.4 5.1E-11 1.8E-15 93.6 20.5 192 133-344 12-228 (261)
91 1qqe_A Vesicular transport pro 99.4 3.1E-11 1.1E-15 96.5 17.7 211 115-343 32-272 (292)
92 3dra_A Protein farnesyltransfe 99.4 4.8E-09 1.6E-13 83.3 29.8 219 80-304 48-286 (306)
93 3urz_A Uncharacterized protein 99.4 3.7E-11 1.3E-15 90.8 16.9 169 137-312 5-191 (208)
94 3qky_A Outer membrane assembly 99.4 8E-11 2.8E-15 92.5 19.0 188 97-305 12-224 (261)
95 3dra_A Protein farnesyltransfe 99.4 2.3E-09 7.7E-14 85.2 26.9 225 113-343 46-291 (306)
96 3urz_A Uncharacterized protein 99.4 1.7E-10 5.9E-15 87.1 19.2 166 100-271 4-187 (208)
97 2yhc_A BAMD, UPF0169 lipoprote 99.4 5.3E-10 1.8E-14 85.6 21.9 191 136-347 4-220 (225)
98 2fo7_A Synthetic consensus TPR 99.4 2.5E-10 8.6E-15 79.5 18.4 92 33-127 5-96 (136)
99 2pzi_A Probable serine/threoni 99.4 6.9E-11 2.3E-15 105.6 19.1 173 147-326 402-583 (681)
100 2pzi_A Probable serine/threoni 99.3 2.9E-11 1E-15 107.9 16.7 152 42-200 404-563 (681)
101 2uy1_A Cleavage stimulation fa 99.3 2.5E-08 8.4E-13 85.4 33.4 311 8-339 28-412 (493)
102 1qqe_A Vesicular transport pro 99.3 1.8E-10 6.1E-15 92.0 18.9 210 80-304 32-268 (292)
103 2vsy_A XCC0866; transferase, g 99.3 1.1E-10 3.9E-15 102.3 18.4 154 149-306 2-158 (568)
104 4ga2_A E3 SUMO-protein ligase 99.3 2.5E-11 8.6E-16 86.5 11.4 141 38-185 6-148 (150)
105 3qou_A Protein YBBN; thioredox 99.3 2.4E-10 8.3E-15 90.9 18.1 168 168-339 114-283 (287)
106 2r5s_A Uncharacterized protein 99.3 1.2E-10 4.1E-15 85.5 14.5 160 176-339 11-172 (176)
107 4ga2_A E3 SUMO-protein ligase 99.3 5.1E-11 1.7E-15 84.9 12.0 144 179-326 5-149 (150)
108 2vsy_A XCC0866; transferase, g 99.3 1.8E-10 6.1E-15 101.1 17.7 154 7-166 2-158 (568)
109 3rjv_A Putative SEL1 repeat pr 99.3 2.1E-09 7.2E-14 81.4 21.1 140 13-164 5-157 (212)
110 3qou_A Protein YBBN; thioredox 99.3 8.2E-10 2.8E-14 87.9 19.2 168 133-304 114-283 (287)
111 3rjv_A Putative SEL1 repeat pr 99.3 3.4E-09 1.2E-13 80.2 21.6 176 47-236 4-198 (212)
112 2r5s_A Uncharacterized protein 99.3 1.5E-10 5.2E-15 85.0 13.6 159 142-304 12-172 (176)
113 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.1E-09 7.2E-14 82.2 20.5 188 28-236 3-214 (225)
114 2ifu_A Gamma-SNAP; membrane fu 99.3 3E-10 1E-14 91.4 16.2 224 78-333 4-254 (307)
115 2ifu_A Gamma-SNAP; membrane fu 99.2 1.8E-09 6.1E-14 86.9 18.4 228 41-298 3-254 (307)
116 3u3w_A Transcriptional activat 99.2 5.2E-08 1.8E-12 77.7 26.1 168 176-343 80-269 (293)
117 2uy1_A Cleavage stimulation fa 99.2 1.2E-07 4E-12 81.2 29.1 299 6-337 6-380 (493)
118 3q7a_A Farnesyltransferase alp 99.2 1.4E-07 4.6E-12 75.8 27.5 223 77-305 66-331 (349)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.5E-09 8.6E-14 81.0 16.9 127 173-305 8-150 (213)
120 3gyz_A Chaperone protein IPGC; 99.1 9.8E-10 3.3E-14 77.9 12.1 97 207-305 37-133 (151)
121 3u3w_A Transcriptional activat 99.1 4.4E-08 1.5E-12 78.2 23.1 127 107-233 82-223 (293)
122 1a17_A Serine/threonine protei 99.1 9.4E-09 3.2E-13 74.3 17.6 132 207-341 14-147 (166)
123 2vgx_A Chaperone SYCD; alterna 99.1 7.7E-10 2.6E-14 78.5 11.1 98 206-305 21-118 (148)
124 2qfc_A PLCR protein; TPR, HTH, 99.1 2.8E-08 9.6E-13 79.3 20.8 169 173-341 77-267 (293)
125 4gco_A Protein STI-1; structur 99.1 5.2E-09 1.8E-13 71.9 14.3 100 243-344 15-114 (126)
126 3q7a_A Farnesyltransferase alp 99.1 1.4E-07 4.8E-12 75.7 24.1 224 110-339 64-330 (349)
127 3gw4_A Uncharacterized protein 99.1 4.5E-09 1.5E-13 78.9 14.6 84 148-232 4-92 (203)
128 1hh8_A P67PHOX, NCF-2, neutrop 99.1 3.1E-08 1E-12 75.0 18.9 131 137-273 7-153 (213)
129 2c2l_A CHIP, carboxy terminus 99.1 1.4E-09 4.9E-14 86.1 11.5 96 100-198 4-99 (281)
130 2e2e_A Formate-dependent nitri 99.1 3.8E-09 1.3E-13 77.5 12.9 121 182-305 21-144 (177)
131 2e2e_A Formate-dependent nitri 99.1 6.6E-09 2.2E-13 76.2 14.0 123 4-130 20-145 (177)
132 2c2l_A CHIP, carboxy terminus 99.0 4.6E-09 1.6E-13 83.2 13.9 99 64-165 3-101 (281)
133 4gco_A Protein STI-1; structur 99.0 1.4E-08 4.7E-13 69.8 14.5 97 30-129 14-110 (126)
134 2vgx_A Chaperone SYCD; alterna 99.0 2.6E-09 8.9E-14 75.7 11.0 110 16-129 9-118 (148)
135 2qfc_A PLCR protein; TPR, HTH, 99.0 1.7E-07 5.8E-12 74.8 22.5 166 101-266 76-262 (293)
136 3gw4_A Uncharacterized protein 99.0 7.3E-09 2.5E-13 77.7 13.8 159 4-163 2-174 (203)
137 1a17_A Serine/threonine protei 99.0 4.4E-08 1.5E-12 70.7 17.4 128 173-303 15-144 (166)
138 4f3v_A ESX-1 secretion system 99.0 3.3E-08 1.1E-12 76.8 17.2 29 112-142 18-46 (282)
139 4f3v_A ESX-1 secretion system 99.0 2.1E-08 7.1E-13 77.9 15.8 186 7-200 19-237 (282)
140 3gyz_A Chaperone protein IPGC; 99.0 2.5E-08 8.5E-13 70.6 15.0 101 241-343 36-136 (151)
141 1na0_A Designed protein CTPR3; 99.0 4.6E-08 1.6E-12 66.7 16.0 114 206-322 9-122 (125)
142 2xcb_A PCRH, regulatory protei 99.0 1.1E-08 3.7E-13 72.0 12.9 97 207-305 19-115 (142)
143 3dss_A Geranylgeranyl transfer 99.0 1.9E-06 6.6E-11 68.9 26.6 232 82-343 47-307 (331)
144 1na0_A Designed protein CTPR3; 99.0 5.1E-08 1.7E-12 66.5 15.6 94 31-127 11-104 (125)
145 2vyi_A SGTA protein; chaperone 99.0 4.2E-08 1.4E-12 67.5 15.3 118 206-326 12-129 (131)
146 2lni_A Stress-induced-phosphop 99.0 3.7E-08 1.3E-12 68.1 14.7 118 205-325 15-132 (133)
147 2lni_A Stress-induced-phosphop 99.0 4.4E-08 1.5E-12 67.8 14.9 97 29-128 16-112 (133)
148 2vyi_A SGTA protein; chaperone 99.0 3.4E-08 1.2E-12 68.1 14.0 93 68-163 15-107 (131)
149 1p5q_A FKBP52, FK506-binding p 98.9 5.3E-08 1.8E-12 79.2 16.7 94 242-337 197-291 (336)
150 3sz7_A HSC70 cochaperone (SGT) 98.9 3.6E-08 1.2E-12 71.2 14.2 99 205-305 10-108 (164)
151 3upv_A Heat shock protein STI1 98.9 4.9E-08 1.7E-12 67.0 13.8 96 207-304 5-100 (126)
152 1p5q_A FKBP52, FK506-binding p 98.9 8.2E-08 2.8E-12 78.1 16.8 130 172-303 148-292 (336)
153 3q49_B STIP1 homology and U bo 98.9 7.8E-08 2.7E-12 67.0 14.5 98 205-304 8-105 (137)
154 3dss_A Geranylgeranyl transfer 98.9 7.3E-06 2.5E-10 65.6 26.9 244 12-286 48-319 (331)
155 2kck_A TPR repeat; tetratricop 98.9 2.5E-08 8.5E-13 66.7 11.0 103 241-345 6-111 (112)
156 4gcn_A Protein STI-1; structur 98.9 4.1E-08 1.4E-12 67.5 11.9 96 208-304 10-111 (127)
157 1elw_A TPR1-domain of HOP; HOP 98.9 9.8E-08 3.4E-12 64.3 13.5 98 206-305 4-101 (118)
158 1hxi_A PEX5, peroxisome target 98.9 4E-08 1.4E-12 66.9 11.4 99 244-344 20-118 (121)
159 2fbn_A 70 kDa peptidylprolyl i 98.9 8E-09 2.7E-13 77.3 8.4 129 208-339 40-185 (198)
160 2xcb_A PCRH, regulatory protei 98.9 2.8E-08 9.6E-13 69.9 10.8 99 28-129 17-115 (142)
161 3upv_A Heat shock protein STI1 98.9 2.3E-07 8E-12 63.6 15.0 98 242-341 5-102 (126)
162 2fbn_A 70 kDa peptidylprolyl i 98.8 1.4E-08 4.6E-13 76.0 8.8 96 207-304 89-185 (198)
163 1elw_A TPR1-domain of HOP; HOP 98.8 4.4E-07 1.5E-11 61.0 15.7 95 31-128 6-100 (118)
164 4gcn_A Protein STI-1; structur 98.8 3.2E-07 1.1E-11 63.0 14.3 101 242-343 9-115 (127)
165 3sz7_A HSC70 cochaperone (SGT) 98.8 1.5E-07 5E-12 68.0 13.1 100 28-130 10-109 (164)
166 3q49_B STIP1 homology and U bo 98.8 9E-07 3.1E-11 61.5 16.1 96 171-268 9-104 (137)
167 1elr_A TPR2A-domain of HOP; HO 98.8 2.4E-07 8.3E-12 63.7 12.9 111 207-320 5-121 (131)
168 2dba_A Smooth muscle cell asso 98.8 9.9E-07 3.4E-11 62.1 16.1 110 28-143 27-140 (148)
169 2dba_A Smooth muscle cell asso 98.7 4.6E-07 1.6E-11 63.9 13.5 98 205-305 27-128 (148)
170 2kck_A TPR repeat; tetratricop 98.7 3.6E-07 1.2E-11 60.9 12.2 94 68-164 9-105 (112)
171 4b4t_Q 26S proteasome regulato 98.7 3.3E-06 1.1E-10 71.3 20.9 198 106-303 10-243 (434)
172 2xev_A YBGF; tetratricopeptide 98.7 5.2E-07 1.8E-11 62.0 13.3 94 210-305 6-105 (129)
173 1elr_A TPR2A-domain of HOP; HO 98.7 2.3E-07 7.9E-12 63.8 11.5 102 241-343 4-111 (131)
174 4b4t_Q 26S proteasome regulato 98.7 1.8E-06 6E-11 73.0 18.7 197 72-268 11-243 (434)
175 3ro3_A PINS homolog, G-protein 98.7 3.1E-07 1.1E-11 65.7 12.2 136 208-343 11-161 (164)
176 1wao_1 Serine/threonine protei 98.7 7E-08 2.4E-12 82.4 9.5 118 180-300 15-134 (477)
177 1wao_1 Serine/threonine protei 98.7 1.7E-07 5.6E-12 80.1 11.5 118 3-124 15-134 (477)
178 3rkv_A Putative peptidylprolyl 98.7 4.1E-07 1.4E-11 65.4 11.8 99 206-305 11-126 (162)
179 1hxi_A PEX5, peroxisome target 98.7 5.3E-07 1.8E-11 61.3 11.6 95 209-305 20-114 (121)
180 2hr2_A Hypothetical protein; a 98.7 9.3E-07 3.2E-11 62.1 12.9 103 244-346 14-137 (159)
181 2if4_A ATFKBP42; FKBP-like, al 98.6 2E-07 6.8E-12 75.9 10.1 101 243-346 232-334 (338)
182 3k9i_A BH0479 protein; putativ 98.6 1.2E-07 4.1E-12 64.1 7.4 86 219-305 3-90 (117)
183 2xev_A YBGF; tetratricopeptide 98.6 3.8E-06 1.3E-10 57.5 15.0 92 177-270 8-105 (129)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 1.5E-06 5.2E-11 73.8 14.6 87 242-330 318-404 (457)
185 3k9i_A BH0479 protein; putativ 98.6 2.7E-07 9.3E-12 62.3 7.9 86 43-129 4-90 (117)
186 1ihg_A Cyclophilin 40; ppiase 98.6 2.1E-06 7.1E-11 70.7 14.6 122 209-332 226-362 (370)
187 3rkv_A Putative peptidylprolyl 98.5 3.7E-06 1.3E-10 60.4 14.0 102 171-273 11-129 (162)
188 3ro3_A PINS homolog, G-protein 98.5 2.3E-06 7.9E-11 61.1 13.0 132 173-304 11-157 (164)
189 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 3.4E-06 1.2E-10 71.7 15.6 130 172-303 269-413 (457)
190 1ihg_A Cyclophilin 40; ppiase 98.5 3.2E-06 1.1E-10 69.6 13.7 121 67-190 225-360 (370)
191 1dce_A Protein (RAB geranylger 98.4 2.3E-05 7.8E-10 68.3 18.5 156 187-346 45-227 (567)
192 2if4_A ATFKBP42; FKBP-like, al 98.4 1.7E-06 5.9E-11 70.4 10.8 149 29-200 179-328 (338)
193 1dce_A Protein (RAB geranylger 98.4 7.4E-05 2.5E-09 65.1 21.5 173 152-329 45-244 (567)
194 1klx_A Cysteine rich protein B 98.4 2.9E-05 9.7E-10 53.9 14.6 110 221-341 10-127 (138)
195 2kat_A Uncharacterized protein 98.4 3.5E-06 1.2E-10 56.5 9.6 80 224-305 3-82 (115)
196 2hr2_A Hypothetical protein; a 98.3 1.9E-05 6.5E-10 55.5 12.3 94 210-304 15-130 (159)
197 3n71_A Histone lysine methyltr 98.3 9.7E-06 3.3E-10 68.9 12.3 127 215-341 318-465 (490)
198 1klx_A Cysteine rich protein B 98.3 5.4E-05 1.9E-09 52.5 13.9 111 7-129 8-126 (138)
199 3n71_A Histone lysine methyltr 98.2 2E-05 6.8E-10 67.1 12.7 126 180-305 318-464 (490)
200 2l6j_A TPR repeat-containing p 98.2 4.6E-06 1.6E-10 55.3 7.0 60 209-269 7-66 (111)
201 2kat_A Uncharacterized protein 98.2 9.1E-06 3.1E-10 54.4 8.4 76 13-91 4-79 (115)
202 1zu2_A Mitochondrial import re 98.2 8.8E-06 3E-10 57.0 8.3 97 219-319 15-132 (158)
203 2l6j_A TPR repeat-containing p 98.2 1.3E-05 4.3E-10 53.2 8.8 94 239-335 2-102 (111)
204 1na3_A Designed protein CTPR2; 98.2 5.4E-05 1.8E-09 47.9 11.2 81 241-323 9-89 (91)
205 1zu2_A Mitochondrial import re 98.1 8.7E-06 3E-10 57.0 7.3 91 252-344 13-124 (158)
206 1na3_A Designed protein CTPR2; 98.1 6.5E-05 2.2E-09 47.5 11.1 81 206-288 9-89 (91)
207 3ma5_A Tetratricopeptide repea 98.1 2.8E-05 9.7E-10 50.5 8.7 66 238-304 4-69 (100)
208 3ma5_A Tetratricopeptide repea 98.0 2.3E-05 7.7E-10 51.0 7.6 62 65-127 7-68 (100)
209 2kc7_A BFR218_protein; tetratr 98.0 3.9E-05 1.3E-09 49.6 7.8 89 247-346 6-96 (99)
210 3ly7_A Transcriptional activat 97.8 0.0079 2.7E-07 48.6 19.6 73 168-244 274-346 (372)
211 3ly7_A Transcriptional activat 97.7 0.0015 5E-08 52.7 14.7 65 97-164 274-338 (372)
212 1pc2_A Mitochondria fission pr 97.7 0.00064 2.2E-08 47.1 10.0 83 222-305 14-100 (152)
213 2kc7_A BFR218_protein; tetratr 97.6 0.0006 2E-08 43.8 8.7 64 282-346 6-70 (99)
214 3qww_A SET and MYND domain-con 97.6 0.00034 1.2E-08 58.5 9.1 88 253-340 310-411 (433)
215 3qwp_A SET and MYND domain-con 97.5 0.00074 2.5E-08 56.6 10.7 93 248-340 294-400 (429)
216 3bee_A Putative YFRE protein; 97.5 0.0015 5E-08 41.5 9.3 67 238-305 3-72 (93)
217 3qww_A SET and MYND domain-con 97.4 0.00048 1.6E-08 57.7 8.5 60 67-126 342-408 (433)
218 3qwp_A SET and MYND domain-con 97.4 0.0012 4E-08 55.4 10.7 87 76-162 298-397 (429)
219 2v5f_A Prolyl 4-hydroxylase su 97.4 0.002 6.7E-08 42.0 9.6 67 239-305 3-75 (104)
220 3u64_A Protein TP_0956; tetrat 97.4 0.03 1E-06 43.4 16.6 88 116-203 179-272 (301)
221 3bee_A Putative YFRE protein; 97.4 0.0065 2.2E-07 38.4 11.1 65 64-129 5-72 (93)
222 1pc2_A Mitochondria fission pr 97.3 0.0052 1.8E-07 42.6 10.7 84 187-272 14-102 (152)
223 4h7y_A Dual specificity protei 97.2 0.0071 2.4E-07 41.4 10.5 113 204-319 11-136 (161)
224 3mkq_A Coatomer beta'-subunit; 97.2 0.022 7.4E-07 52.2 16.8 152 38-230 608-760 (814)
225 3mkq_A Coatomer beta'-subunit; 97.1 0.054 1.8E-06 49.6 18.9 126 75-234 609-735 (814)
226 1nzn_A CGI-135 protein, fissio 97.0 0.0062 2.1E-07 40.6 8.7 82 222-304 17-102 (126)
227 2v5f_A Prolyl 4-hydroxylase su 97.0 0.01 3.5E-07 38.4 9.7 67 28-94 4-75 (104)
228 4h7y_A Dual specificity protei 97.0 0.03 1E-06 38.4 11.5 64 219-284 73-136 (161)
229 3u64_A Protein TP_0956; tetrat 96.9 0.035 1.2E-06 43.1 13.1 85 222-308 179-272 (301)
230 3mkq_B Coatomer subunit alpha; 96.6 0.1 3.5E-06 37.2 16.0 99 40-161 16-114 (177)
231 1nzn_A CGI-135 protein, fissio 96.5 0.037 1.3E-06 36.8 9.5 84 259-344 19-107 (126)
232 1wy6_A Hypothetical protein ST 96.4 0.12 4.1E-06 34.7 15.1 141 75-238 17-157 (172)
233 4b4t_P 26S proteasome regulato 96.3 0.42 1.5E-05 40.2 18.6 189 43-233 30-245 (445)
234 3o48_A Mitochondria fission 1 96.3 0.095 3.2E-06 35.1 10.2 67 238-304 37-106 (134)
235 1wy6_A Hypothetical protein ST 96.2 0.15 5.1E-06 34.3 14.2 68 99-168 90-157 (172)
236 3mkq_B Coatomer subunit alpha; 96.2 0.2 6.9E-06 35.7 15.0 130 178-337 12-141 (177)
237 4ady_A RPN2, 26S proteasome re 96.0 0.9 3.1E-05 41.8 20.1 155 75-234 500-657 (963)
238 4b4t_P 26S proteasome regulato 95.9 0.68 2.3E-05 39.0 24.0 260 8-267 30-321 (445)
239 1v54_E Cytochrome C oxidase po 95.8 0.17 5.8E-06 31.9 10.1 63 256-319 25-87 (109)
240 1y8m_A FIS1; mitochondria, unk 95.8 0.26 8.9E-06 33.5 11.5 67 238-304 36-105 (144)
241 2ff4_A Probable regulatory pro 95.6 0.39 1.3E-05 39.6 13.7 70 245-315 175-249 (388)
242 4gns_B Protein CSD3, chitin bi 95.4 0.25 8.6E-06 44.3 12.5 126 210-337 252-397 (754)
243 2y69_E Cytochrome C oxidase su 95.3 0.38 1.3E-05 32.2 10.1 63 256-319 68-130 (152)
244 4gns_B Protein CSD3, chitin bi 95.2 0.38 1.3E-05 43.1 12.8 54 248-302 344-397 (754)
245 2p58_C Putative type III secre 94.9 0.39 1.3E-05 30.1 8.8 78 9-95 22-99 (116)
246 4fhn_B Nucleoporin NUP120; pro 94.8 2.4 8.2E-05 40.6 18.0 183 106-297 818-1041(1139)
247 4fhn_B Nucleoporin NUP120; pro 94.8 2.9 9.7E-05 40.1 18.3 193 142-341 818-1051(1139)
248 2uwj_G Type III export protein 94.7 0.36 1.2E-05 30.2 7.9 86 8-103 20-105 (115)
249 4ady_A RPN2, 26S proteasome re 94.5 2.9 9.9E-05 38.6 24.9 260 39-304 384-657 (963)
250 3ffl_A Anaphase-promoting comp 94.4 0.39 1.3E-05 33.7 8.7 62 31-92 22-90 (167)
251 2ff4_A Probable regulatory pro 94.1 0.4 1.4E-05 39.5 9.9 69 209-278 174-247 (388)
252 3lvg_A Clathrin heavy chain 1; 93.7 6.7E-05 2.3E-09 62.0 -12.7 245 28-296 53-324 (624)
253 1zbp_A Hypothetical protein VP 93.4 1.2 4E-05 34.2 10.3 121 214-345 5-134 (273)
254 3lvg_A Clathrin heavy chain 1; 93.2 1.8E-06 6.1E-11 71.0 -22.6 242 66-336 55-316 (624)
255 1qsa_A Protein (soluble lytic 93.2 4.2 0.00014 35.8 27.0 309 6-339 18-347 (618)
256 3o48_A Mitochondria fission 1 92.9 1.4 4.8E-05 29.5 10.6 70 274-343 38-110 (134)
257 3ffl_A Anaphase-promoting comp 92.6 0.21 7E-06 35.0 4.9 114 3-129 29-151 (167)
258 1v54_E Cytochrome C oxidase po 92.2 1.4 4.7E-05 27.9 9.8 50 80-129 25-74 (109)
259 1zbp_A Hypothetical protein VP 90.7 2.7 9.2E-05 32.2 9.4 51 5-56 8-58 (273)
260 1y8m_A FIS1; mitochondria, unk 90.7 2.8 9.7E-05 28.5 11.6 70 203-272 36-108 (144)
261 2y69_E Cytochrome C oxidase su 90.2 3 0.0001 28.0 9.8 63 80-144 68-130 (152)
262 2uwj_G Type III export protein 89.9 2.5 8.4E-05 26.6 8.5 88 78-175 19-106 (115)
263 2p58_C Putative type III secre 89.6 2.6 9E-05 26.5 9.2 87 78-174 20-106 (116)
264 4b4t_R RPN7, 26S proteasome re 89.3 5.6 0.00019 33.2 11.5 98 102-199 133-236 (429)
265 2wpv_A GET4, UPF0363 protein Y 86.9 10 0.00034 30.0 17.0 21 320-340 197-217 (312)
266 2wpv_A GET4, UPF0363 protein Y 86.3 11 0.00037 29.8 19.1 24 160-183 81-104 (312)
267 4b4t_R RPN7, 26S proteasome re 85.9 12 0.00042 31.2 11.6 97 138-234 133-236 (429)
268 3esl_A Checkpoint serine/threo 84.4 9.8 0.00034 27.7 10.9 56 255-310 93-149 (202)
269 3lpz_A GET4 (YOR164C homolog); 82.5 17 0.00058 29.0 22.3 81 240-339 135-215 (336)
270 2zu6_B Programmed cell death p 81.2 18 0.00062 28.5 12.1 79 244-323 169-249 (307)
271 3eiq_C Programmed cell death p 80.6 21 0.00072 28.9 11.7 212 102-324 56-301 (358)
272 3esl_A Checkpoint serine/threo 79.5 16 0.00053 26.7 10.3 56 149-204 92-148 (202)
273 3lpz_A GET4 (YOR164C homolog); 79.0 23 0.00078 28.3 18.9 139 173-330 37-186 (336)
274 4a1g_A Mitotic checkpoint seri 74.0 19 0.00065 24.8 10.2 50 260-309 84-134 (152)
275 3txn_A 26S proteasome regulato 71.5 41 0.0014 27.6 25.5 295 29-342 19-345 (394)
276 2ion_A PDCD4, programmed cell 69.8 24 0.00084 24.3 7.6 65 208-273 11-77 (152)
277 3txn_A 26S proteasome regulato 68.7 48 0.0016 27.3 30.2 159 3-163 28-208 (394)
278 3jxi_A Vanilloid receptor-rela 67.2 4.6 0.00016 30.7 3.5 28 318-345 229-256 (260)
279 4a1g_A Mitotic checkpoint seri 67.1 28 0.00096 24.0 10.1 50 155-204 84-134 (152)
280 1bpo_A Protein (clathrin); cla 66.3 59 0.002 27.4 12.2 70 24-95 356-425 (494)
281 2wvi_A Mitotic checkpoint seri 66.1 31 0.0011 24.2 10.2 54 259-312 78-132 (164)
282 1bpo_A Protein (clathrin); cla 65.9 60 0.002 27.4 10.5 72 93-166 354-425 (494)
283 4ets_A Ferric uptake regulatio 65.1 25 0.00085 24.6 6.6 23 143-165 39-61 (162)
284 3bu8_A Telomeric repeat-bindin 63.9 41 0.0014 24.8 7.6 20 38-57 123-142 (235)
285 3ltm_A Alpha-REP4; protein eng 63.9 38 0.0013 24.4 19.0 18 63-80 31-48 (211)
286 1wdy_A 2-5A-dependent ribonucl 63.0 22 0.00075 27.1 6.7 18 36-53 9-26 (285)
287 2nsz_A Programmed cell death p 62.1 32 0.0011 22.9 8.9 64 209-273 10-75 (129)
288 3eyy_A Putative iron uptake re 61.1 32 0.0011 23.4 6.5 33 223-255 34-66 (145)
289 4b4t_S RPN3, 26S proteasome re 59.9 83 0.0028 27.0 12.0 66 29-94 231-299 (523)
290 2fe3_A Peroxide operon regulat 59.9 38 0.0013 23.0 7.9 23 256-278 36-58 (145)
291 3ltm_A Alpha-REP4; protein eng 59.5 47 0.0016 24.0 20.0 143 26-186 30-172 (211)
292 2xig_A Ferric uptake regulatio 59.2 40 0.0014 23.1 7.7 36 220-255 40-75 (150)
293 2d2s_A Exocyst complex compone 58.2 57 0.0019 24.5 9.4 90 177-269 24-119 (235)
294 2w57_A Ferric uptake regulatio 57.6 43 0.0015 22.9 6.6 60 197-257 8-68 (150)
295 1mzb_A Ferric uptake regulatio 57.3 40 0.0014 22.5 6.9 59 197-256 9-68 (136)
296 2wvi_A Mitotic checkpoint seri 56.7 48 0.0016 23.2 9.8 51 155-205 79-130 (164)
297 2xig_A Ferric uptake regulatio 56.5 45 0.0015 22.8 7.8 59 232-291 18-76 (150)
298 3eyy_A Putative iron uptake re 56.4 40 0.0014 23.0 6.2 59 231-291 9-67 (145)
299 1qsa_A Protein (soluble lytic 56.2 1.1E+02 0.0037 27.1 32.2 49 283-334 388-436 (618)
300 4aez_C MAD3, mitotic spindle c 55.9 60 0.0021 24.1 9.5 52 258-309 131-183 (223)
301 2fe3_A Peroxide operon regulat 55.5 46 0.0016 22.6 7.5 61 265-326 11-71 (145)
302 1mzb_A Ferric uptake regulatio 54.0 46 0.0016 22.2 6.2 61 231-292 8-69 (136)
303 2d2s_A Exocyst complex compone 53.8 68 0.0023 24.1 9.3 90 212-304 24-119 (235)
304 1wdy_A 2-5A-dependent ribonucl 52.9 39 0.0013 25.6 6.6 238 70-334 7-273 (285)
305 3bqo_A Telomeric repeat-bindin 52.9 63 0.0021 23.4 7.9 23 107-129 124-146 (211)
306 2w57_A Ferric uptake regulatio 52.4 50 0.0017 22.6 6.3 61 231-292 7-68 (150)
307 3kea_A K1L; tropism, ANK repea 51.0 81 0.0028 24.2 9.2 48 72-123 35-82 (285)
308 3ygs_P Procaspase 9; apoptosis 49.3 38 0.0013 21.1 4.8 66 15-87 25-90 (97)
309 1oai_A Nuclear RNA export fact 49.1 15 0.00051 20.5 2.5 24 113-136 33-56 (59)
310 2ijq_A Hypothetical protein; s 48.9 65 0.0022 22.5 8.3 49 255-303 46-102 (161)
311 3mwm_A ZUR, putative metal upt 48.8 32 0.0011 23.2 4.7 48 245-292 17-64 (139)
312 4ets_A Ferric uptake regulatio 48.7 65 0.0022 22.4 6.7 71 223-294 14-87 (162)
313 4b4t_S RPN3, 26S proteasome re 47.9 82 0.0028 27.0 7.8 64 242-305 232-299 (523)
314 3hra_A Ankyrin repeat family p 47.5 34 0.0012 24.3 5.2 38 295-332 157-196 (201)
315 4gq2_M Nucleoporin NUP120; bet 47.4 1.9E+02 0.0064 27.3 13.0 28 313-340 899-926 (950)
316 3lxu_X Tripeptidyl-peptidase 2 46.3 2.3E+02 0.0077 27.9 12.0 84 257-343 1265-1348(1354)
317 2fu4_A Ferric uptake regulatio 45.0 47 0.0016 19.6 6.7 7 261-267 37-43 (83)
318 2crb_A Nuclear receptor bindin 44.6 54 0.0018 20.3 4.7 24 279-302 18-41 (97)
319 2o03_A Probable zinc uptake re 43.7 49 0.0017 22.0 5.0 46 246-291 15-60 (131)
320 3ph0_C ASCG; type III secretio 43.7 40 0.0014 18.5 4.2 14 44-57 21-34 (61)
321 2f6m_A Suppressor protein STP2 42.9 46 0.0016 19.0 4.7 46 278-324 4-49 (65)
322 3pvs_A Replication-associated 41.9 1.5E+02 0.0053 24.8 14.1 27 135-163 193-219 (447)
323 2ijq_A Hypothetical protein; s 41.8 87 0.003 21.9 8.4 48 219-266 45-100 (161)
324 2b7e_A PRE-mRNA processing pro 41.7 29 0.00099 19.4 2.9 29 293-321 3-31 (59)
325 3t5v_B Nuclear mRNA export pro 41.5 1.2E+02 0.0041 25.6 7.9 27 245-271 180-206 (455)
326 2o03_A Probable zinc uptake re 41.2 53 0.0018 21.8 4.9 48 211-258 15-62 (131)
327 3eiq_C Programmed cell death p 40.9 1.4E+02 0.0049 24.1 16.2 27 31-57 56-82 (358)
328 3f3f_C Nucleoporin NUP85; stru 40.4 1.4E+02 0.0048 26.0 8.1 73 256-330 496-568 (570)
329 3eu9_A Huntingtin-interacting 39.7 70 0.0024 23.3 6.0 51 283-337 181-233 (240)
330 3mwm_A ZUR, putative metal upt 39.6 49 0.0017 22.3 4.5 49 210-258 17-65 (139)
331 2ion_A PDCD4, programmed cell 39.5 91 0.0031 21.4 8.6 23 140-162 13-35 (152)
332 2r9g_A AAA ATPase, central reg 39.4 1.1E+02 0.0037 22.3 10.8 17 150-166 28-44 (204)
333 3bu8_A Telomeric repeat-bindin 38.8 1.2E+02 0.004 22.5 11.5 49 116-164 88-142 (235)
334 3bge_A Predicted ATPase; struc 38.6 1.1E+02 0.0038 22.2 9.5 23 148-170 19-41 (201)
335 4aez_C MAD3, mitotic spindle c 38.2 1.2E+02 0.0042 22.5 10.1 51 154-204 132-183 (223)
336 1oyz_A Hypothetical protein YI 36.6 1.4E+02 0.0047 22.7 25.8 123 168-304 139-262 (280)
337 2cos_A Serine/threonine protei 36.5 49 0.0017 17.9 3.1 18 320-337 29-48 (54)
338 3jxi_A Vanilloid receptor-rela 36.1 29 0.00098 26.1 3.3 26 74-99 11-36 (260)
339 4gq2_M Nucleoporin NUP120; bet 35.7 2.9E+02 0.0098 26.1 11.2 108 177-290 816-950 (950)
340 1k1a_A B-cell lymphoma 3-encod 35.6 1.3E+02 0.0043 21.9 8.2 180 142-335 12-204 (241)
341 2etb_A Transient receptor pote 35.0 52 0.0018 24.6 4.6 23 319-341 226-248 (256)
342 3hra_A Ankyrin repeat family p 34.6 53 0.0018 23.2 4.5 14 40-53 13-26 (201)
343 3ltj_A Alpharep-4; protein eng 33.9 1.2E+02 0.0043 21.4 20.2 16 170-185 120-135 (201)
344 4fke_A Aminopeptidase N; zinc 33.2 3.1E+02 0.011 25.7 17.8 89 176-269 691-786 (909)
345 2rfa_A Transient receptor pote 33.1 1.4E+02 0.0047 21.6 7.5 56 283-339 158-222 (232)
346 3ljn_A Hypothetical protein; a 33.0 1.8E+02 0.0062 23.1 7.8 47 286-336 218-266 (364)
347 2nsz_A Programmed cell death p 32.6 1.1E+02 0.0037 20.3 10.0 22 176-197 12-33 (129)
348 1ug3_A EIF4GI, eukaryotic prot 32.5 1.9E+02 0.0065 23.1 8.3 25 139-163 14-38 (339)
349 3pvs_A Replication-associated 32.1 2.3E+02 0.0077 23.8 14.7 36 218-253 267-302 (447)
350 3ctd_A Putative ATPase, AAA fa 32.0 1.5E+02 0.0052 21.8 9.9 17 150-166 49-65 (213)
351 1wty_A Hypothetical protein TT 31.6 1.1E+02 0.0037 19.9 6.9 75 222-303 4-79 (119)
352 1k1a_A B-cell lymphoma 3-encod 31.2 1.2E+02 0.004 22.2 6.0 186 106-310 12-210 (241)
353 2qx5_A Nucleoporin NIC96; mRNA 31.0 2.9E+02 0.0099 24.7 15.4 26 31-57 155-180 (661)
354 1wgl_A TOLL-interacting protei 30.3 74 0.0025 17.7 4.5 18 149-166 36-53 (59)
355 3mv2_A Coatomer subunit alpha; 30.1 2.1E+02 0.0071 22.8 10.9 20 38-57 123-142 (325)
356 2pnn_A Transient receptor pote 30.1 49 0.0017 25.1 3.8 18 319-336 238-255 (273)
357 2p22_A Suppressor protein STP2 28.6 1E+02 0.0035 21.8 4.6 53 274-327 109-161 (174)
358 1ixm_A SPO0B, protein (sporula 28.3 1.2E+02 0.0043 21.8 5.3 71 256-337 14-84 (192)
359 2dod_A Transcription elongatio 28.1 92 0.0031 18.8 3.8 32 116-148 16-47 (82)
360 2keb_A DNA polymerase subunit 27.0 1.2E+02 0.0041 19.0 7.0 31 260-290 28-58 (101)
361 2qx5_A Nucleoporin NIC96; mRNA 26.7 3.5E+02 0.012 24.2 14.8 37 4-41 162-198 (661)
362 2r9g_A AAA ATPase, central reg 26.4 1.9E+02 0.0065 21.1 10.4 56 183-239 26-86 (204)
363 3bqo_A Telomeric repeat-bindin 25.8 66 0.0023 23.3 3.3 20 284-303 125-144 (211)
364 1ya0_A SMG-7 transcript varian 25.7 3.1E+02 0.011 23.4 10.5 74 213-288 159-232 (497)
365 3f3f_C Nucleoporin NUP85; stru 25.6 3.4E+02 0.012 23.7 8.6 74 185-260 495-568 (570)
366 3lxu_X Tripeptidyl-peptidase 2 24.8 5.2E+02 0.018 25.6 10.3 47 253-302 1296-1342(1354)
367 3d5l_A Regulatory protein RECX 24.8 2.1E+02 0.0072 21.1 11.0 51 222-273 92-142 (221)
368 1ug3_A EIF4GI, eukaryotic prot 24.5 2.7E+02 0.0092 22.2 13.4 64 32-97 14-78 (339)
369 4fke_A Aminopeptidase N; zinc 24.5 4.4E+02 0.015 24.7 16.8 157 140-304 690-859 (909)
370 3bge_A Predicted ATPase; struc 24.3 2.1E+02 0.0071 20.8 8.9 33 185-217 21-53 (201)
371 1uzc_A Hypothetical protein FL 24.2 96 0.0033 18.0 3.3 33 115-148 13-45 (71)
372 2p22_A Suppressor protein STP2 24.2 1.3E+02 0.0043 21.4 4.4 47 66-113 112-158 (174)
373 2rpa_A Katanin P60 ATPase-cont 24.1 94 0.0032 18.5 3.3 24 281-304 17-40 (78)
374 3qil_A Clathrin heavy chain 1; 23.8 1.2E+02 0.0043 19.9 4.0 52 32-87 35-86 (125)
375 3t5v_B Nuclear mRNA export pro 23.7 2.8E+02 0.0096 23.4 7.2 61 207-267 177-246 (455)
376 4b4t_O 26S proteasome regulato 23.1 3.1E+02 0.011 22.4 9.3 57 177-233 82-154 (393)
377 3l6a_A Eukaryotic translation 23.0 3E+02 0.01 22.3 14.0 26 67-92 14-39 (364)
378 3ltj_A Alpharep-4; protein eng 22.9 2E+02 0.0069 20.2 21.3 154 26-198 25-178 (201)
379 1dp3_A TRAM protein; helix-loo 22.4 75 0.0026 17.3 2.3 43 1-43 3-45 (55)
380 1zl8_A LIN-7; heterodimer, alp 22.1 1E+02 0.0035 16.4 4.3 19 291-309 8-26 (53)
381 2yru_A Steroid receptor RNA ac 21.8 1.7E+02 0.006 19.0 5.9 43 263-305 48-90 (118)
382 2ko4_A Mediator of RNA polymer 21.6 1.1E+02 0.0039 18.2 3.1 32 95-126 31-62 (81)
383 3eu9_A Huntingtin-interacting 21.5 1.7E+02 0.0058 21.1 5.3 18 318-335 181-198 (240)
384 3v30_A DNA-binding protein rfx 21.3 2E+02 0.0067 19.5 5.9 21 319-339 140-160 (172)
385 3aji_A 26S proteasome non-ATPa 21.0 2.4E+02 0.0081 20.3 6.6 174 143-335 10-193 (231)
386 3e3v_A Regulatory protein RECX 20.7 2.3E+02 0.0078 20.0 11.4 50 223-273 50-99 (177)
387 2qfz_A TBC1 domain family memb 20.3 2.2E+02 0.0074 22.7 5.9 75 228-302 231-312 (345)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-34 Score=255.05 Aligned_cols=333 Identities=10% Similarity=0.022 Sum_probs=297.7
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------------------------------HHHHhccCC
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTAL--------------------------------------VSAYGQSGL 44 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~ 44 (351)
+|.+.|++++|+++|+++.+.++. +..++..+ +..|.+.|+
T Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 287 (597)
T 2xpi_A 209 VYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch
Confidence 577899999999999999987654 55554444 445667899
Q ss_pred hHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHH
Q 018743 45 LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFS 124 (351)
Q Consensus 45 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 124 (351)
+++|.++|+++.+. +++..+|..++..+.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|.++++
T Consensus 288 ~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (597)
T 2xpi_A 288 LRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISN 363 (597)
T ss_dssp HHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999873 6899999999999999999999999999999876 5588899999999999999999999999
Q ss_pred HHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 018743 125 AMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204 (351)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 204 (351)
++.+. .+.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+++.++..|.+.|++++|.++|+++.+.+. .
T Consensus 364 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 439 (597)
T 2xpi_A 364 DLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-G 439 (597)
T ss_dssp HHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-T
T ss_pred HHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-c
Confidence 99876 36788899999999999999999999999998754 55788999999999999999999999999988644 3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc----CCccC--HHh
Q 018743 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS----DVILD--TPF 278 (351)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~ 278 (351)
+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|..+|+++.+. +..|+ ..+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 78899999999999999999999999999875 568899999999999999999999999999876 55666 789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++++.+|..+.
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999874 457899999999999999999999999999999887653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-34 Score=252.07 Aligned_cols=333 Identities=13% Similarity=0.016 Sum_probs=222.2
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccC--------------CCCccHHHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS--------------DCKPDVYTYS 69 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~ 69 (351)
|.+.|++++|..+|+.+... ++++.+++.++.+|.+.|++++|+++|+++.... +.+++..+|+
T Consensus 127 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (597)
T 2xpi_A 127 YCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY 204 (597)
T ss_dssp HHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHH
Confidence 44455555555555554332 3455555556666666666666666555322211 1233455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-----------------------------------------------------
Q 018743 70 ILIKSCTKFHRFDLIEKILAEMSYLGI----------------------------------------------------- 96 (351)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------------------------------------- 96 (351)
.++.++.+.|++++|.++|++|.+.+.
T Consensus 205 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (597)
T 2xpi_A 205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH 284 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcC
Confidence 666666666666666666666654331
Q ss_pred -----------------CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 018743 97 -----------------ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159 (351)
Q Consensus 97 -----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (351)
+++..+++.++..|.+.|++++|.++|+++.+.. +.+..++..++.++.+.|++++|.+++
T Consensus 285 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLIS 362 (597)
T ss_dssp HHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred cchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1344444555555555555555555555554442 334444555555555555555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 018743 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP 239 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 239 (351)
+++.... +.+..++..++..|.+.|++++|.++|+++.+... .+..+|+.++..+.+.|++++|.++|+++.+.+ +.
T Consensus 363 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 439 (597)
T 2xpi_A 363 NDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QG 439 (597)
T ss_dssp HHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TT
T ss_pred HHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 5554432 45667778888888888888888888888776533 267788888888888888888888888888764 55
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--HHH
Q 018743 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER----HCVPD--NIT 313 (351)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~ 313 (351)
+..++..++.+|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 7778888888888888888888888888876554 7788888888888888888888888888765 55676 678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 314 FATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
|..++.+|.+.|++++|.+.++++++.+|..
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 8888888888888888888888888877654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6e-34 Score=242.63 Aligned_cols=185 Identities=15% Similarity=0.185 Sum_probs=115.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCCHHhH
Q 018743 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM---------YDKMRSVMDFMQKRFFFPTVVTY 209 (351)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 209 (351)
++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.+. .+.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 45566666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc
Q 018743 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA 289 (351)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (351)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743 290 GDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323 (351)
Q Consensus 290 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (351)
|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666554
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.3e-33 Score=240.47 Aligned_cols=206 Identities=13% Similarity=0.116 Sum_probs=175.8
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCC---------H
Q 018743 12 QASLLFEVMLSDGLKPSVD-VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR---------F 81 (351)
Q Consensus 12 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 81 (351)
.+..+.+.+.+.+..+++. .++.+|.+|++.|++++|+++|++|.+ .|+.||..+|+.+|.+|++.+. .
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4555666777777665554 588899999999999999999999998 7999999999999999987654 6
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743 82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161 (351)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (351)
+.|.++|++|...|+.||..||+.|+.+|++.|++++|.++|++|.+. |+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999766 6999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 018743 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA 219 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (351)
|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..+...
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999888753
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.6e-31 Score=220.17 Aligned_cols=328 Identities=10% Similarity=0.097 Sum_probs=209.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 018743 7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86 (351)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 86 (351)
.|++++|...++...+..+. +..+|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|..
T Consensus 46 ~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 122 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQ 122 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444443322 44455555555555555555555555554421 2233345555555555555555555
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 018743 87 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166 (351)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 166 (351)
.++++.+.. |.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+
T Consensus 123 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 199 (388)
T 1w3b_A 123 AYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199 (388)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 555555443 2233444455555555555555555555555542 3344555566666666666666666666665543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHH
Q 018743 167 VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCS 246 (351)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 246 (351)
+.+...+..+...+...|++++|...+++.....+. +..++..+...+...|++++|...++++.+.+ +.+..++..
T Consensus 200 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 276 (388)
T 1w3b_A 200 -PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCN 276 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 334555666666666666666666666666554322 56777778888888888888888888888764 445677888
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 018743 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326 (351)
Q Consensus 247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 326 (351)
+...+.+.|++++|...++++.+..+. +..++..+...+...|++++|.+.++++.+. .+.+..++..+..++.+.|+
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCC
Confidence 888888888888888888888877544 7778888888888888888888888888875 24456788888888888888
Q ss_pred HHHHHHHHHHHHHhcccCC
Q 018743 327 TEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 327 ~~~A~~~~~~~~~~~~~~~ 345 (351)
+++|...++++++..|...
T Consensus 355 ~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 355 LQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp CHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHhhCCCCH
Confidence 8888888888888776543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.2e-30 Score=214.72 Aligned_cols=330 Identities=12% Similarity=-0.004 Sum_probs=294.8
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHH
Confidence 45689999999999999887655 77888889999999999999999999988743 6678899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
|...|+++.+.. |.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999875 5567789999999999999999999999998873 4556678888999999999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243 (351)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (351)
... +.+..++..+...+...|++++|...|+++....+. +...|..+...+...|++++|...+.+..... +.+..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 764 556788999999999999999999999999887543 67889999999999999999999999998874 456889
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (351)
+..+...+...|++++|...++++.+.++. +..++..+..++.+.|++++|.+.|+++.+. .+.+..++..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHH
Confidence 999999999999999999999999988765 6788999999999999999999999999986 35678899999999999
Q ss_pred cCCHHHHHHHHHHHHHhcccC
Q 018743 324 LGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 324 ~g~~~~A~~~~~~~~~~~~~~ 344 (351)
.|++++|...++++++..|..
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTC
T ss_pred cCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999999877654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=6.3e-27 Score=199.84 Aligned_cols=324 Identities=11% Similarity=0.019 Sum_probs=265.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 11 EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAE 90 (351)
Q Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 90 (351)
..+...+..+....+. ++..+..++..+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...+++
T Consensus 9 ~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445556666655444 78899999999999999999999999998742 55788899999999999999999999999
Q ss_pred HHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCH---hHHHHH------------HHHHhcCCCHHHH
Q 018743 91 MSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI---FTLNSM------------ISAYGNSGNIEKM 155 (351)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a 155 (351)
+.+.+ +.+..++..+..+|.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99886 5578899999999999999999999999998763 3344 555555 4448899999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 156 EKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (351)
...++++.... +.+...+..+..++.+.|++++|...++.+.+... .+..++..+...+...|++++|...++++...
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998765 56788899999999999999999999999887643 37889999999999999999999999999876
Q ss_pred CCCccHHHHHHH------------HHHHHhcCCHhHHHHHHHHhhhcCCccC----HHhHHHHHHHHHhcCCHHHHHHHH
Q 018743 236 GMKPNSITYCSL------------VSAYSKAGLIMKVDSILRQVENSDVILD----TPFFNCIISAYGQAGDVEKMGELF 299 (351)
Q Consensus 236 ~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 299 (351)
. +.+...+..+ ...+...|++++|...++++.+..+. + ...+..+..++.+.|++++|+..+
T Consensus 241 ~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 241 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4 4445555544 78899999999999999999886543 3 347888899999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743 300 LTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 300 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 345 (351)
+++.+.. +.+...|..+..+|...|++++|...++++++..|..+
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence 9998762 44688999999999999999999999999999887654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=2.3e-26 Score=196.42 Aligned_cols=330 Identities=10% Similarity=-0.001 Sum_probs=274.5
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (351)
.+.+.|++++|+.+|+.+.+..+. +..+|..+..++...|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHH
Confidence 467889999999999999987544 89999999999999999999999999998743 456788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH---hHHHHH------------HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743 83 LIEKILAEMSYLGIECSA---VTYNTI------------IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (351)
+|...|+++.+.. +.+. ..+..+ ...+...|++++|...|+++.+.. +.+..++..+..++.
T Consensus 112 ~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 112 EAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence 9999999999875 3344 565555 445889999999999999998873 667888999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH------------HHH
Q 018743 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV------------IET 215 (351)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~ 215 (351)
+.|++++|.+.++++.... +.+..++..+...+...|++++|...++.+....+. +...+..+ ...
T Consensus 189 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764 567889999999999999999999999999876433 44555444 788
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743 216 FGKAGHIEKMEEYFKKMKHRGMKPN----SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291 (351)
Q Consensus 216 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 291 (351)
+...|++++|...|+++.+.. +.+ ...+..+...+.+.|++++|...++++.+..+. +..++..+..+|...|+
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcC
Confidence 999999999999999999863 222 447888999999999999999999999887654 78899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC-CHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HHHhcccC
Q 018743 292 VEKMGELFLTMKERHCVP-DNITFATMIQA------------YNALG-----MTEAAQNLENK-MIAMKENS 344 (351)
Q Consensus 292 ~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~~ 344 (351)
+++|...|+++.+. .| +...+..+..+ |...| +.+++.+.+++ .++..|+.
T Consensus 345 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 345 YDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999985 44 45566666533 33344 56777888886 56555553
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.6e-26 Score=195.75 Aligned_cols=335 Identities=9% Similarity=-0.076 Sum_probs=200.6
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (351)
.+.+.|++++|+..|+++.+.+ |++.+|..+..++.+.|++++|++.++++.+.. +.+..+|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 90 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFA 90 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHH
Confidence 3556788888888888888764 578888888888888888888888888887642 445667778888888888888
Q ss_pred HHHHHHHHHHHcCCCC----------------------------------------------------------------
Q 018743 83 LIEKILAEMSYLGIEC---------------------------------------------------------------- 98 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~~---------------------------------------------------------------- 98 (351)
+|...|+++...+...
T Consensus 91 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 8888887776554200
Q ss_pred --------------CHhHHHHHHHHHhh---cCChHHHHHHHHHHHh-----cCCC-------CCCHhHHHHHHHHHhcC
Q 018743 99 --------------SAVTYNTIIDGYGK---AKKFEEMESSFSAMVE-----SGGC-------HPDIFTLNSMISAYGNS 149 (351)
Q Consensus 99 --------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~l~~~~~~~ 149 (351)
+...+......+.. .|++++|...|+++.+ .... +.+..++..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 01111222222221 4555555555555544 1000 11223344444445555
Q ss_pred CCHHHHHHHHHHHHhcCC--------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 150 GNIEKMEKWYNEFNLMGV--------------------------------KADIQTLNILTKSYGRAGMYDKMRSVMDFM 197 (351)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (351)
|++++|...++++..... +.+...+..+...+...|++++|...++.+
T Consensus 251 ~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 555555555544443321 233444555555555666666666666665
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-C-
Q 018743 198 QKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-D- 275 (351)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~- 275 (351)
...... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+.. +
T Consensus 331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 554322 34455556666666666666666666666542 3345566666666666777777777666665433221 1
Q ss_pred ---HHhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 276 ---TPFFNCIISAYGQ---AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 276 ---~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
...+..+..++.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++++..|..
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 2256666667777 677777777777766542 3345566667777777777777777777777766553
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=5.5e-24 Score=176.01 Aligned_cols=307 Identities=10% Similarity=0.007 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 107 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (351)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 34556666666777777777777777766532 3345566666666777777777777777766654 33556666667
Q ss_pred HHHhhcCChHHHHHHHHHHHhcCCCC---CCHhHHHHH------------HHHHhcCCCHHHHHHHHHHHHhcCCCCCHH
Q 018743 108 DGYGKAKKFEEMESSFSAMVESGGCH---PDIFTLNSM------------ISAYGNSGNIEKMEKWYNEFNLMGVKADIQ 172 (351)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (351)
.++...|++++|...++++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 155 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAE 155 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH
Confidence 77777777777777777766542 2 233333333 456667777777777777766554 44566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHH-------
Q 018743 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYC------- 245 (351)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 245 (351)
.+..+...+...|++++|...++.+....+ .+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH
Confidence 666777777777777777777777666533 256666677777777777777777777766653 22333222
Q ss_pred -----HHHHHHHhcCCHhHHHHHHHHhhhcCCccCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018743 246 -----SLVSAYSKAGLIMKVDSILRQVENSDVILDT----PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316 (351)
Q Consensus 246 -----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 316 (351)
.+...+...|++++|...++++.+..+. +. ..+..+..++...|++++|.+.++++.+. .+.+..++..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHH
Confidence 2255566777777777777777665433 22 22444566777777777777777777765 2335667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 317 MIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
+...+...|++++|...++++++..|..
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 7777777777777777777777766654
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=3.4e-23 Score=171.27 Aligned_cols=310 Identities=9% Similarity=-0.026 Sum_probs=258.9
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (351)
.+.+.|++++|+..|+.+.+..+. ++.++..+..++...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChH
Confidence 356789999999999999988655 78999999999999999999999999998743 446788999999999999999
Q ss_pred HHHHHHHHHHHcCCC---CCHhHHHHH------------HHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743 83 LIEKILAEMSYLGIE---CSAVTYNTI------------IDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (351)
+|...++++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 89 ~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 89 EAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHH
Confidence 9999999998875 3 355555555 578899999999999999998874 667888999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH------------HHHHH
Q 018743 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN------------IVIET 215 (351)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~ 215 (351)
..|++++|...++++.... +.+...+..+...+...|++++|...++...+..+. +...+. .+...
T Consensus 166 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ 243 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEE 243 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765 567889999999999999999999999998876433 333333 23667
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743 216 FGKAGHIEKMEEYFKKMKHRGMKPNS----ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291 (351)
Q Consensus 216 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 291 (351)
+...|++++|...++++.+.. +.+. ..+..+...+...|++++|...+++..+..+. +..++..+..++...|+
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCC
Confidence 889999999999999998864 2233 23556788999999999999999999987654 78899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743 292 VEKMGELFLTMKERHCVPDNITFATMIQAYNA 323 (351)
Q Consensus 292 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (351)
+++|.+.|+++.+.. +-+...+..+..+...
T Consensus 322 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 322 YDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 999999999999862 2235556666555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=6e-24 Score=185.49 Aligned_cols=332 Identities=9% Similarity=-0.012 Sum_probs=257.0
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (351)
.+.+.|++++|+..|+++.+..+. ++.+|..+..++.+.|++++|++.++++.+.. +.+..++..+..++...|+++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHH
Confidence 356788999999999998887655 78888889999999999999999999888743 456777888888888888888
Q ss_pred HHHHHHHHH-----------------------------------------------------------------------
Q 018743 83 LIEKILAEM----------------------------------------------------------------------- 91 (351)
Q Consensus 83 ~a~~~~~~~----------------------------------------------------------------------- 91 (351)
+|...|+.+
T Consensus 111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 887766422
Q ss_pred --------------------------------------HHcCCCCC-------HhHHHHHHHHHhhcCChHHHHHHHHHH
Q 018743 92 --------------------------------------SYLGIECS-------AVTYNTIIDGYGKAKKFEEMESSFSAM 126 (351)
Q Consensus 92 --------------------------------------~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 126 (351)
.+.. +.+ ..++..+...+...|++++|...++++
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1111 111 123555566777788888999999888
Q ss_pred HhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 018743 127 VESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV 206 (351)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 206 (351)
.+. .|+..++..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++.+....+. +.
T Consensus 270 ~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 344 (537)
T 3fp2_A 270 INL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NV 344 (537)
T ss_dssp HHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CS
T ss_pred Hhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH
Confidence 876 3457778888888889999999999998887765 456778888888999999999999999988876443 56
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-----CHHhHHH
Q 018743 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-----DTPFFNC 281 (351)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~ 281 (351)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+.. ....+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 678888888999999999999999988874 5567788888899999999999999998877543221 1222444
Q ss_pred HHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743 282 IISAYGQA----------GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 282 l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 345 (351)
...++... |++++|...|+++.+.. +.+...+..+...|...|++++|.+.++++++..|..+
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 55677777 99999999999988763 44677889999999999999999999999999887654
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.9e-23 Score=178.69 Aligned_cols=310 Identities=10% Similarity=-0.041 Sum_probs=263.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 107 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (351)
....+......+.+.|++++|+..|+++.+. .|+..+|..+..++...|++++|...++++.+.+ |.+..++..+.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 3567788899999999999999999999984 4799999999999999999999999999999886 56788999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhcCCCC------------------------------------------------------
Q 018743 108 DGYGKAKKFEEMESSFSAMVESGGCH------------------------------------------------------ 133 (351)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------------------------------ 133 (351)
.++...|++++|...|+++....+..
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999987663110
Q ss_pred -----------------------CCHhHHHHHHHHHhc---CCCHHHHHHHHHHHHh-----cCC--------CCCHHHH
Q 018743 134 -----------------------PDIFTLNSMISAYGN---SGNIEKMEKWYNEFNL-----MGV--------KADIQTL 174 (351)
Q Consensus 134 -----------------------~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~ 174 (351)
.+...+......+.. .|++++|..+++++.. ... +.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 012223333333443 8999999999999887 311 2235577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 018743 175 NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254 (351)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (351)
..+...+...|++++|...++.+...... ...+..+...+...|++++|...++++.... +.+...+..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 88899999999999999999999887544 8888999999999999999999999998874 55778899999999999
Q ss_pred CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334 (351)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (351)
|++++|...++++.+..+. +...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999987765 6788999999999999999999999999876 2446778899999999999999999999
Q ss_pred HHHHHhcccCCC
Q 018743 335 NKMIAMKENSGK 346 (351)
Q Consensus 335 ~~~~~~~~~~~~ 346 (351)
+++++..|..+.
T Consensus 396 ~~a~~~~~~~~~ 407 (514)
T 2gw1_A 396 DLAIELENKLDG 407 (514)
T ss_dssp HHHHHHHHTSSS
T ss_pred HHHHHhhhccch
Confidence 999998887654
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=4.9e-23 Score=168.35 Aligned_cols=294 Identities=10% Similarity=-0.015 Sum_probs=244.8
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH
Q 018743 26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105 (351)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 105 (351)
+.++..+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..++..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 4466778888899999999999999999998753 3445567777788899999999999999998875 557888999
Q ss_pred HHHHHhhcC-ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018743 106 IIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA 184 (351)
Q Consensus 106 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (351)
+...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 999999999 9999999999998763 5567789999999999999999999999998765 44566777799999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCccHHHHHHHHHHHHhcCC
Q 018743 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG--------MKPNSITYCSLVSAYSKAGL 256 (351)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~ 256 (351)
|++++|...++...+..+. +...+..+...+...|++++|...++++.+.. .+....++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999887543 67888999999999999999999999987642 13345788899999999999
Q ss_pred HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHcCCHH
Q 018743 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY-NALGMTE 328 (351)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 328 (351)
+++|...++++.+..+. +...+..+..++...|++++|.+.|+++.+.. +.+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999887655 77889999999999999999999999988752 33567777787777 4556543
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=2.1e-23 Score=173.24 Aligned_cols=295 Identities=9% Similarity=-0.040 Sum_probs=235.2
Q ss_pred HhccCChHHHHH-HHHHhhccCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743 39 YGQSGLLDEAFS-TINDMKSVSDCKP--DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115 (351)
Q Consensus 39 ~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (351)
+.-.|++++|++ .+++........| +...+..+...+...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578999998 8887665432222 34567788889999999999999999999886 5688899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHH---------------HHHH
Q 018743 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI---------------LTKS 180 (351)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~ 180 (351)
+++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.... +.+...+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999998874 6678889999999999999999999999998754 222222221 2333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH
Q 018743 181 YGRAGMYDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259 (351)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 259 (351)
+...|++++|...++.+.+..+.. +..++..+...+...|++++|...++++.... +.+..++..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 448899999999999998864432 57889999999999999999999999999874 5568899999999999999999
Q ss_pred HHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHHcCCHHH
Q 018743 260 VDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP----------DNITFATMIQAYNALGMTEA 329 (351)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~ 329 (351)
|...++++.+..+. +...+..+..++.+.|++++|...|+++.+..... ...+|..+..+|...|++++
T Consensus 270 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999999887654 78889999999999999999999999988642111 16789999999999999999
Q ss_pred HHHHHHHHHH
Q 018743 330 AQNLENKMIA 339 (351)
Q Consensus 330 A~~~~~~~~~ 339 (351)
|..++++.++
T Consensus 349 A~~~~~~~l~ 358 (368)
T 1fch_A 349 YGAADARDLS 358 (368)
T ss_dssp HHHHHTTCHH
T ss_pred HHHhHHHHHH
Confidence 9998876554
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.2e-22 Score=164.51 Aligned_cols=277 Identities=9% Similarity=-0.003 Sum_probs=239.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH
Q 018743 62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS 141 (351)
Q Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 141 (351)
+.+...+..+...+...|++++|..+++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 95 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFA 95 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHH
Confidence 4455567788888899999999999999998876 5577788888899999999999999999998874 567778999
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 018743 142 MISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220 (351)
Q Consensus 142 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (351)
+...+...| ++++|.+.+++..... +.+...+..+...+...|++++|...++.+.+.... +...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence 999999999 9999999999998765 456778999999999999999999999999887544 4566777899999999
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC--------ccCHHhHHHHHHHHHhcCCH
Q 018743 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV--------ILDTPFFNCIISAYGQAGDV 292 (351)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~ 292 (351)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .....++..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999875 56788999999999999999999999999876421 23467899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743 293 EKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 293 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 345 (351)
++|...++++.+.. +.+...+..+...+...|++++|.+.++++++..|...
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence 99999999999863 44678899999999999999999999999998887654
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.4e-21 Score=169.00 Aligned_cols=311 Identities=9% Similarity=0.010 Sum_probs=253.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 107 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (351)
....|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|...++++.+.+ |.+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 45778889999999999999999999998753 5578889999999999999999999999999886 56888999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhcCCCC------------------------------------CCHh--------------
Q 018743 108 DGYGKAKKFEEMESSFSAMVESGGCH------------------------------------PDIF-------------- 137 (351)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------------~~~~-------------- 137 (351)
.++...|++++|...|+.+ ...+.. |+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 9999999999999999644 221000 1000
Q ss_pred ----------------HHHHHHHHHhc--------CCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCC
Q 018743 138 ----------------TLNSMISAYGN--------SGNIEKMEKWYNEFNLMGVKADI-------QTLNILTKSYGRAGM 186 (351)
Q Consensus 138 ----------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~ 186 (351)
....+...+.. .|++++|..+++++.+.. +.+. .++..+...+...|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhccc
Confidence 11112222222 147889999999988754 2332 346677788889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 018743 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQ 266 (351)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 266 (351)
+++|...++.+.... |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999998864 457888899999999999999999999999875 55788999999999999999999999999
Q ss_pred hhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 267 VENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
+.+..+. +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++++..|....
T Consensus 336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 9987665 67889999999999999999999999999863 446778999999999999999999999999999887665
Q ss_pred Cc
Q 018743 347 KL 348 (351)
Q Consensus 347 ~~ 348 (351)
..
T Consensus 414 ~~ 415 (537)
T 3fp2_A 414 IH 415 (537)
T ss_dssp CS
T ss_pred hH
Confidence 43
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=2.3e-22 Score=166.96 Aligned_cols=293 Identities=8% Similarity=-0.042 Sum_probs=233.9
Q ss_pred cccCCCHHHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC
Q 018743 4 LGKCKQPEQASL-LFEVMLSDGLK---PSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79 (351)
Q Consensus 4 ~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (351)
+...|++++|.. .|++..+.... .+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCc
Confidence 334577788887 77765544222 135668889999999999999999999999743 557788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH---------------HHH
Q 018743 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS---------------MIS 144 (351)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~ 144 (351)
++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+.. .+.
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 9999999999999886 5688899999999999999999999999998864 333333321 133
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 018743 145 AYGNSGNIEKMEKWYNEFNLMGVKA-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE 223 (351)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (351)
.+...|++++|...++++....... +..++..+...+...|++++|...++++....+ .+...+..+...+...|+++
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHH
Confidence 3448899999999999998765221 578899999999999999999999999888643 36788999999999999999
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc----------CHHhHHHHHHHHHhcCCHH
Q 018743 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL----------DTPFFNCIISAYGQAGDVE 293 (351)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~ 293 (351)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+..+.. ...+|..+..++...|+++
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999999999874 5578899999999999999999999999988654331 1678999999999999999
Q ss_pred HHHHHHHHHH
Q 018743 294 KMGELFLTMK 303 (351)
Q Consensus 294 ~a~~~~~~~~ 303 (351)
+|..++++..
T Consensus 348 ~A~~~~~~~l 357 (368)
T 1fch_A 348 AYGAADARDL 357 (368)
T ss_dssp GHHHHHTTCH
T ss_pred hHHHhHHHHH
Confidence 9999887543
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=1.3e-22 Score=168.34 Aligned_cols=266 Identities=8% Similarity=-0.081 Sum_probs=221.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 018743 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143 (351)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 143 (351)
+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 34558888889999999999999999999886 5688899999999999999999999999998874 56788899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHhHHH
Q 018743 144 SAYGNSGNIEKMEKWYNEFNLMGVKAD-----------IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PTVVTYNI 211 (351)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 211 (351)
.++...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++....+. ++...+..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999988743 22 223344578899999999999999999887433 26888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291 (351)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 291 (351)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 9999999999999999999999874 567889999999999999999999999999987655 68899999999999999
Q ss_pred HHHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743 292 VEKMGELFLTMKERHCV-----------PDNITFATMIQAYNALGMTEAAQNLENK 336 (351)
Q Consensus 292 ~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (351)
+++|...|+++.+.... .+...|..+..++...|+.+.+..+.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998864211 1367899999999999999998887765
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=4.1e-21 Score=156.71 Aligned_cols=282 Identities=7% Similarity=-0.033 Sum_probs=178.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743 31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110 (351)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (351)
.+..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34444555555555555555555554421 2344445555555555555555555555555443 33444555555555
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHHhcCCHH
Q 018743 111 GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL-TK-SYGRAGMYD 188 (351)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 188 (351)
...|++++|.+.++++.+.. +.+...+..+... .|+......+ .. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 55555555555555554432 1111112111000 0000111111 22 366778888
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 268 (351)
+|...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888776443 67778888888888889999998888888764 5567788888888989999999999999888
Q ss_pred hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-----------DNITFATMIQAYNALGMTEAAQNLENKM 337 (351)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (351)
+..+. +...+..+..++...|++++|.+.++++.+..... +...|..+..++...|++++|..++++.
T Consensus 234 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77654 67788888899999999999999999887652221 4678888889999999999999988876
Q ss_pred HHhcc
Q 018743 338 IAMKE 342 (351)
Q Consensus 338 ~~~~~ 342 (351)
++..+
T Consensus 313 l~~~~ 317 (327)
T 3cv0_A 313 VEPFA 317 (327)
T ss_dssp SHHHH
T ss_pred HHhcc
Confidence 55443
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=3.2e-21 Score=159.93 Aligned_cols=266 Identities=9% Similarity=-0.028 Sum_probs=222.4
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 107 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (351)
+...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44568889999999999999999999998753 5578889999999999999999999999999886 55788999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhcCCCCCCHhH----------HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC--CHHHHH
Q 018743 108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFT----------LNSMISAYGNSGNIEKMEKWYNEFNLMGVKA--DIQTLN 175 (351)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 175 (351)
.+|...|++++|...++++.+.. +.+... +..+...+...|++++|..+++++.... +. +..++.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 217 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT 217 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHH
Confidence 99999999999999999998763 222222 3345788999999999999999998865 33 688999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 018743 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255 (351)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 255 (351)
.+...+...|++++|...++++.+..+. +..+|..+..++...|++++|...++++.+.. +.+..++..+...|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 9999999999999999999999887443 68899999999999999999999999999874 556889999999999999
Q ss_pred CHhHHHHHHHHhhhcCCc-----------cCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 256 LIMKVDSILRQVENSDVI-----------LDTPFFNCIISAYGQAGDVEKMGELFLT 301 (351)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 301 (351)
++++|...++++.+..+. .+..+|..+..++...|+.+.+.++..+
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998764322 1357899999999999999998887765
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=6.1e-21 Score=155.70 Aligned_cols=269 Identities=12% Similarity=0.036 Sum_probs=172.5
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
+...|++++|..+|+++.+..+. +..++..+..++...|++++|.+.++++.+.. +.+..++..+...+...|++++
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHcCCHHH
Confidence 56789999999999999988655 88999999999999999999999999998743 4567889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH--HHhcCCCHHHHHHHHHH
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS--AYGNSGNIEKMEKWYNE 161 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~ 161 (351)
|...++++.+.. +.+...+..+... .|+......+.. .+...|++++|.+.+++
T Consensus 108 A~~~~~~~~~~~-~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 108 ALASLRAWLLSQ-PQYEQLGSVNLQA-----------------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp HHHHHHHHHHTS-TTTTTC-------------------------------------------CCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CccHHHHHHHhHH-----------------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 999999998875 3344444433100 000011111111 13344455555555555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH
Q 018743 162 FNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS 241 (351)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 241 (351)
+.+.. +.+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+.
T Consensus 164 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 240 (327)
T 3cv0_A 164 ALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYV 240 (327)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH
Confidence 44432 23444555555555555555555555555544422 245556666666666666666666666666553 3345
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-----------CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-----------DTPFFNCIISAYGQAGDVEKMGELFLTM 302 (351)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 302 (351)
..+..+...+...|++++|...++++.+..+.. +...+..+..++...|++++|..++++.
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 666666666777777777777776665543321 3556777777777777777777776643
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=5.9e-20 Score=146.70 Aligned_cols=277 Identities=8% Similarity=0.032 Sum_probs=210.1
Q ss_pred HHHHhccCChHHHHHHHHHhhccCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhc
Q 018743 36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDV--YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113 (351)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (351)
++-....|+++.|+..++..... .|+. .....+.+++...|+++.|...++. . -+|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCC
Confidence 44566789999999998877642 4543 3556677889999999999876654 2 366788888888999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018743 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193 (351)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 193 (351)
++.++|++.++++....-.+.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999876531244566677778889999999999998887 56778888899999999999999999
Q ss_pred HHHHHHcCCCCCHHhH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743 194 MDFMQKRFFFPTVVTY---NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270 (351)
Q Consensus 194 ~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 270 (351)
++.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++.+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988774 332211 122344445688999999999998873 678888999999999999999999999998888
Q ss_pred CCccCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743 271 DVILDTPFFNCIISAYGQAGDVEK-MGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334 (351)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (351)
.+. ++.++..++..+...|+.++ +.++++++.+. .|+... +.....+.+.++++..-|
T Consensus 230 ~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 230 DSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence 766 78888889989999999876 56888888875 444332 223345555566555433
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=2.4e-19 Score=143.22 Aligned_cols=253 Identities=11% Similarity=0.027 Sum_probs=165.9
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHH
Q 018743 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLI 84 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 84 (351)
...|++++|+..++......+.+.......+.++|...|+++.|+..++.. .+|+..++..+...+...++.++|
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 345777777777766554332222345555667777777777777655431 255666777777777777777777
Q ss_pred HHHHHHHHHcCC-CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 85 EKILAEMSYLGI-ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
.+.++++...+. |.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777766553 33455566666777777777777777765 3455667777777777777777777777776
Q ss_pred hcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc
Q 018743 164 LMGVKADIQTL---NILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN 240 (351)
Q Consensus 164 ~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 240 (351)
+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...+++..+.. +-+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 653 332211 122333444577777777777777663 3467777777777777777777777777777664 446
Q ss_pred HHHHHHHHHHHHhcCCHhH-HHHHHHHhhhcCCc
Q 018743 241 SITYCSLVSAYSKAGLIMK-VDSILRQVENSDVI 273 (351)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~ 273 (351)
..++..++..+...|+.++ +..+++++.+..+.
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 6677777777777777755 45677777766543
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=2.6e-17 Score=141.82 Aligned_cols=307 Identities=10% Similarity=0.001 Sum_probs=178.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh----c
Q 018743 7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ----SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK----F 78 (351)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 78 (351)
.+++++|...|++..+.| ++.++..|...|.. .+++++|+..|++..+ . -+...+..+...+.. .
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE-Q---GRDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCC
Confidence 344444444444444332 33344444444444 3444444444444443 1 123334444444433 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh----cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc----CC
Q 018743 79 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN----SG 150 (351)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 150 (351)
+++++|..+|++..+.| +...+..+...|.. .+++++|.+.|++..+.+ +..++..+...|.. .+
T Consensus 165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCC
Confidence 44555555555444432 34444444444444 455555555555554431 33344444444443 45
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----CC
Q 018743 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----GH 221 (351)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~ 221 (351)
++++|.++|++..+.+ +...+..+...+.. .+++++|...|+...+.+ +...+..+...+... ++
T Consensus 238 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 5566666665555432 33444455555555 566667777666665542 344555566666655 67
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh----cCCHHH
Q 018743 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSDVILDTPFFNCIISAYGQ----AGDVEK 294 (351)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 294 (351)
+++|...+++..+.+ +...+..+...|...| +.++|...|++..+.+ ++..+..+...|.. .+++++
T Consensus 312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 777777777777654 3345666666666655 6777888888777653 56777788888887 788888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcc
Q 018743 295 MGELFLTMKERHCVPDNITFATMIQAYNA----LGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 295 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 342 (351)
|.+.|++..+.+ ++..+..+...|.. .++.++|...|+++.+.++
T Consensus 386 A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 386 AAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 888888888764 56677788888887 7889999999998888874
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=7.8e-17 Score=138.81 Aligned_cols=306 Identities=15% Similarity=0.063 Sum_probs=258.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh----c
Q 018743 7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ----SGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK----F 78 (351)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 78 (351)
.+++++|...|+...+.| ++.++..|...|.. .+++++|++.|++..+ . .+...+..+...+.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL-K---GLPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCC
Confidence 789999999999998863 67888889999988 8999999999999987 2 356677778888887 7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh----cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc----CC
Q 018743 79 HRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN----SG 150 (351)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 150 (351)
+++++|..+|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCCCc
Confidence 89999999999998876 66778888888887 789999999999998753 66778888888887 89
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCH
Q 018743 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK----AGHI 222 (351)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 222 (351)
+.++|.++|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..+...+.. .+++
T Consensus 202 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence 9999999999998765 56677778888876 789999999999988763 45666677777777 8999
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-----CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC---CHHH
Q 018743 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA-----GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG---DVEK 294 (351)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 294 (351)
++|...|++..+.| +...+..+...+... +++++|...+++..+.+ +...+..+...|...| ++++
T Consensus 276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHH
Confidence 99999999998765 456777788888877 89999999999998875 4567778888888766 8899
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Q 018743 295 MGELFLTMKERHCVPDNITFATMIQAYNA----LGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 295 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 341 (351)
|++.|++..+.| ++..+..+...|.. .+++++|..++++..+.+
T Consensus 350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 999999999864 67888899999998 899999999999998764
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=6.9e-19 Score=151.05 Aligned_cols=338 Identities=9% Similarity=-0.091 Sum_probs=232.1
Q ss_pred cccCCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccC----C-C-CccHHHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSD--------GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS----D-C-KPDVYTYS 69 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~-~~~~~~~~ 69 (351)
+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+.. + . .....++.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 45689999999999987542 112256789999999999999999999998876431 0 1 12345666
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH---hhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 018743 70 ILIKSCTK--FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY---GKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144 (351)
Q Consensus 70 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 144 (351)
....++.. .+++++|...|++..+.. |-++..+..+..++ ...++.++|++.+++.++.. +.+..++..+..
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~ 217 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLAL 217 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHH
Confidence 66555554 457999999999998875 44666666665553 44677889999999988874 556666666655
Q ss_pred HHhc----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-
Q 018743 145 AYGN----SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA- 219 (351)
Q Consensus 145 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 219 (351)
.+.. .+++++|.+++++..... +.+..++..+...+...|++++|...+++..+..+. +..++..+..+|...
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 218 KLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKV 295 (472)
T ss_dssp HHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHH
Confidence 5443 467889999999988765 567788899999999999999999999999887543 566666666555321
Q ss_pred ------------------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHH--hH
Q 018743 220 ------------------GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP--FF 279 (351)
Q Consensus 220 ------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~ 279 (351)
+..+.|...+++..+.. +.+..++..+...+...|++++|...|++..+..+.+... .+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~ 374 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 23567888888887764 4556778889999999999999999999998775543321 22
Q ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHhcC-----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 018743 280 NCIIS-AYGQAGDVEKMGELFLTMKERH-----------------------CVPDNITFATMIQAYNALGMTEAAQNLEN 335 (351)
Q Consensus 280 ~~l~~-~~~~~g~~~~a~~~~~~~~~~~-----------------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (351)
..+.. .....|++++|+..|++..+.. -+.++.+|..+..+|...|++++|++.|+
T Consensus 375 ~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33332 3456789999999988876532 13456789999999999999999999999
Q ss_pred HHHHhcccCCCC
Q 018743 336 KMIAMKENSGKK 347 (351)
Q Consensus 336 ~~~~~~~~~~~~ 347 (351)
++++.++..+..
T Consensus 455 kALe~~~~~p~a 466 (472)
T 4g1t_A 455 RGLESGSLIPSA 466 (472)
T ss_dssp ------------
T ss_pred HHHhcCCCCCcH
Confidence 999988876543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=5.1e-21 Score=156.41 Aligned_cols=284 Identities=13% Similarity=0.127 Sum_probs=135.8
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
+-+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++
T Consensus 13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHH
Confidence 346788999999999883 346999999999999999999999965 2566789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
|..+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 99988877764 4567889999999999999999888774 356679999999999999999999999976
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243 (351)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (351)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~ 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADE 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhh
Confidence 36899999999999999999999988 2789999999999999999999665543 2233344
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCC------CHHHHH
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA--GDVEKMGELFLTMKERHCVP------DNITFA 315 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~ 315 (351)
...++..|.+.|++++|..+++...... .-....|+.+.-+|++- ++..+.++.|.. ..+++| +...|.
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 5679999999999999999999998776 33678888888888765 334444444432 122333 466899
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 018743 316 TMIQAYNALGMTEAAQNL 333 (351)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~ 333 (351)
-+.-.|.+.++++.|...
T Consensus 287 e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHH
Confidence 999999999999988764
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=6.4e-17 Score=140.74 Aligned_cols=329 Identities=8% Similarity=0.003 Sum_probs=192.9
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHH-HhcCCHHH
Q 018743 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSC-TKFHRFDL 83 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 83 (351)
.+.|++++|..+|+++.+..+. +...|..++..+.+.|++++|..+|++.... .|+...|...+... ...|+.+.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHTTTSTT
T ss_pred HHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHccchhh
Confidence 4578999999999999987554 8889999999999999999999999999874 46777776666432 23455444
Q ss_pred HHH----HHHHHHHc-CCC-CCHhHHHHHHHHHhh---------cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH--
Q 018743 84 IEK----ILAEMSYL-GIE-CSAVTYNTIIDGYGK---------AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY-- 146 (351)
Q Consensus 84 a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 146 (351)
|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|++.++.. ..+....|.......
T Consensus 99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLWRDYNKYEEG 177 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHHHh
Confidence 433 55554432 322 234555555554433 456666666666665421 111111221111100
Q ss_pred -----------hcCCCH------------------------------------------------------------HHH
Q 018743 147 -----------GNSGNI------------------------------------------------------------EKM 155 (351)
Q Consensus 147 -----------~~~~~~------------------------------------------------------------~~a 155 (351)
.+.+++ ..+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 000111 133
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 018743 156 EKWYNEFNLMGVKADIQTLNILTKSYGR-------AGMYD-------KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221 (351)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (351)
..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|+
T Consensus 258 ~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 258 MFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 33444443321 3344455555555543 56655 677777776652122356667777777777777
Q ss_pred HHHHHHHHHHHHHcCCCcc-H-HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH-HHhcCCHHHHHHH
Q 018743 222 IEKMEEYFKKMKHRGMKPN-S-ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA-YGQAGDVEKMGEL 298 (351)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~ 298 (351)
+++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+..+. +...+...+.. +...|+.++|..+
T Consensus 337 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHH
Confidence 77777777777764 332 2 46666666666677777777777776655322 22333222222 2346777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 299 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
|++..+. .+.+...|..++..+.+.|+.++|..+|++++...+.
T Consensus 414 ~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 414 FELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 7776654 2334566667777777777777777777777766543
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.2e-17 Score=131.40 Aligned_cols=227 Identities=11% Similarity=-0.029 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCC----HhHHH
Q 018743 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG-CHPD----IFTLN 140 (351)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ 140 (351)
..+..+...+...|++++|...++++.+.. .+..++..+..++...|++++|...+++..+... ..++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445555555666666666666666665554 4555555566666666666666666665544310 0001 24444
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 018743 141 SMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG 220 (351)
Q Consensus 141 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (351)
.+...+...|++++|...+++.... .|+. .. +...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~-----------------------------------~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DI-----------------------------------LTKLR 119 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HH-----------------------------------HHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HH-----------------------------------HHHHh
Confidence 5555555555555555555555442 2221 12 33334
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFL 300 (351)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 300 (351)
++++|...++++.... +.+...+..+...+...|++++|...++++.+..+. +..++..+..++...|++++|...++
T Consensus 120 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4455555555544432 223344455555555555555555555555544333 44455555555555555555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743 301 TMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 301 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 341 (351)
++.+.. +.+...+..+..++...|++++|...++++++..
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 555432 2234455555555555555555555555555554
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.9e-17 Score=130.17 Aligned_cols=227 Identities=13% Similarity=0.045 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----Hh
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIE--CS----AV 101 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~ 101 (351)
....+..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|...+++..+.... ++ ..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 46788899999999999999999999999843 67788999999999999999999999998875311 11 57
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSY 181 (351)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (351)
++..+..++...|++++|...|++..+. .|+. ..+...|++++|...++.+.... +.+...+..+...+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHH
Confidence 8899999999999999999999999886 4553 34556678899999998887743 33455666677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHH
Q 018743 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVD 261 (351)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 261 (351)
...|++++|...++........ +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7777777777777777665332 55666666666666777777777776666653 334556666666666666666666
Q ss_pred HHHHHhhhc
Q 018743 262 SILRQVENS 270 (351)
Q Consensus 262 ~~~~~~~~~ 270 (351)
..+++..+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665543
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=7.3e-18 Score=128.84 Aligned_cols=208 Identities=11% Similarity=-0.008 Sum_probs=85.3
Q ss_pred CCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743 98 CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNIL 177 (351)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 177 (351)
++...+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 344444444444445555555555555444432 3334444444444444555555555554444432 2233344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 018743 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257 (351)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 257 (351)
..++...+. . .+. .....|++++|+..+++..+.. +-+...+..+...+...|++
T Consensus 80 g~~~~~~~~-------------~--~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 80 SEAYVALYR-------------Q--AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHHH-------------T--CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhh-------------h--hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCh
Confidence 444433300 0 000 0001144455555554444432 22344444444455555555
Q ss_pred hHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336 (351)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (351)
++|...|++..+.. .++..+..+..++...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+++
T Consensus 135 ~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 135 DKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555544444 244444455555555555555555555554431 22344444444555555555555554444
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=4.2e-16 Score=135.63 Aligned_cols=333 Identities=10% Similarity=0.036 Sum_probs=233.6
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCChHHHHH----HHHHhhccCCCC-ccHHHHHHHHHHHHh
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAY-GQSGLLDEAFS----TINDMKSVSDCK-PDVYTYSILIKSCTK 77 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 77 (351)
+.+.|++++|..+|+++++.. |+...|...+... ...|+.+.|.+ +|+......|.. ++...|...+.....
T Consensus 56 ~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~ 133 (530)
T 2ooe_A 56 EIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKG 133 (530)
T ss_dssp HHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhc
Confidence 446789999999999988763 5777777776533 34566665544 666655433433 345566666655443
Q ss_pred ---------cCCHHHHHHHHHHHHHcCCCCCHhHHH--------------------------------------------
Q 018743 78 ---------FHRFDLIEKILAEMSYLGIECSAVTYN-------------------------------------------- 104 (351)
Q Consensus 78 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 104 (351)
.|+++.|..+|++..+.........|.
T Consensus 134 ~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 134 VEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 566777777777766521111112222
Q ss_pred ---------------------HHHHHHhhc----CCh----HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc-------
Q 018743 105 ---------------------TIIDGYGKA----KKF----EEMESSFSAMVESGGCHPDIFTLNSMISAYGN------- 148 (351)
Q Consensus 105 ---------------------~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 148 (351)
..+...... ++. +++..+|++.+.. .+.+...|..++..+.+
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhh
Confidence 111111000 111 2455566666655 24566677777777765
Q ss_pred CCCHH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcC
Q 018743 149 SGNIE-------KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT-VVTYNIVIETFGKAG 220 (351)
Q Consensus 149 ~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 220 (351)
.|+++ +|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++.+..+. + ...|...+..+.+.|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhc
Confidence 78987 89999999986323556888999999999999999999999999886332 3 357888888889999
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299 (351)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 299 (351)
++++|..+|++..+.. +.+...+...+.. +...|+.++|..+|+...+..+. ++..|..++..+.+.|+.++|..+|
T Consensus 371 ~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 9999999999998763 2233333332222 33689999999999999887654 7889999999999999999999999
Q ss_pred HHHHhcC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 300 LTMKERH-CVPD--NITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 300 ~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
+++...+ ..|+ ...|...+......|+.+.+..+.+++.+..|.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9999863 2232 347888888888999999999999999988774
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=4.9e-16 Score=133.30 Aligned_cols=312 Identities=9% Similarity=-0.014 Sum_probs=228.4
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhcc-------CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---
Q 018743 26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV-------SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG--- 95 (351)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 95 (351)
......|+.+...+...|++++|++.|++..+. ...+....+|+.+..+|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334678999999999999999999999887542 1123346789999999999999999999999876431
Q ss_pred ----CCCCHhHHHHHHHHHhh--cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH---HhcCCCHHHHHHHHHHHHhcC
Q 018743 96 ----IECSAVTYNTIIDGYGK--AKKFEEMESSFSAMVESGGCHPDIFTLNSMISA---YGNSGNIEKMEKWYNEFNLMG 166 (351)
Q Consensus 96 ----~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 166 (351)
......++..+..++.. .+++++|...|++..+.. |.+...+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 11234566666655554 457999999999998874 4455555555544 445678888999999888764
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHH
Q 018743 167 VKADIQTLNILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSI 242 (351)
Q Consensus 167 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 242 (351)
+.+...+..+...+.. .|++++|...+++.....+. +...+..+...+...|++++|...+++..+.. +-+..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 4456666666555544 46788999999998876543 67788899999999999999999999999874 44666
Q ss_pred HHHHHHHHHHhc-------------------CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 243 TYCSLVSAYSKA-------------------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 243 ~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 303 (351)
++..+...|... +..+.|...++...+..+. +...+..+...+...|++++|++.|++..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 777776655432 2356788888888776655 66778899999999999999999999998
Q ss_pred hcCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHhccc
Q 018743 304 ERHCVPDNI--TFATMIQ-AYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 304 ~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
+....|... .+..+.. .+...|++++|+..++++++..|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 864333221 2333332 245789999999999999887665
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.81 E-value=2.7e-17 Score=130.42 Aligned_cols=193 Identities=8% Similarity=-0.019 Sum_probs=83.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC--HhHHHHHHHHHh
Q 018743 70 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD--IFTLNSMISAYG 147 (351)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 147 (351)
.....+...|++++|...++++.+.. +.+...+..+..++...|++++|...+++..+.. ..++ ..+|..+...+.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHH
Confidence 33444455555555555555555443 2233445555555555555555555555554421 1111 112444445555
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 018743 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227 (351)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 227 (351)
..|++++|++.+++..+.. +.+...+..+...+...|++++|...+++..+..+ .+...+..+...+...+++++|..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544432 22334444444444444555555444444443311 133333333312222234444444
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCC---HhHHHHHHHHh
Q 018743 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGL---IMKVDSILRQV 267 (351)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 267 (351)
.++++.+.. +.+...+..+...+...|+ +++|...++++
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 444444432 2223334444444444444 44444444443
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.81 E-value=1.5e-17 Score=127.12 Aligned_cols=174 Identities=16% Similarity=0.075 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247 (351)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (351)
+++...+..+...+.+.|++++|...|+...+..+. +...+..+..++...|++++|...+++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 345556666666777777777777777776665433 56666667777777777777777777777664 4456667777
Q ss_pred HHHHHhc-----------CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018743 248 VSAYSKA-----------GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFAT 316 (351)
Q Consensus 248 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 316 (351)
...+... |++++|...+++..+..+. +...+..+..++...|++++|+..|+++.+.. .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 9999999999999988766 78889999999999999999999999999886 68889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 317 MIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
+..+|...|++++|...++++++..|....
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 186 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLD 186 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999887653
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=4.7e-20 Score=162.77 Aligned_cols=116 Identities=15% Similarity=0.214 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQ---KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247 (351)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (351)
..+|+++|.+|++.|+.++|.++|.+|. ..|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3455555555555555555555555443 2345555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCH-hHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743 248 VSAYSKAGLI-MKVDSILRQVENSDVILDTPFFNCIISAY 286 (351)
Q Consensus 248 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (351)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 5555555542 45555555555555555555555555433
No 38
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=7.8e-19 Score=143.63 Aligned_cols=260 Identities=12% Similarity=0.141 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 108 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (351)
+.+.+.|+. +.|++++|.++++++.. | .+|..++.++.+.|++++|++.|.+ .+|..+|..++.
T Consensus 6 ~~a~~~ll~---~~~~ld~A~~fae~~~~-----~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~ 69 (449)
T 1b89_A 6 TSAVQVLIE---HIGNLDRAYEFAERCNE-----P--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQ 69 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH---HccCHHHHHHHHHhCCC-----h--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHH
Confidence 344444554 67889999999999842 3 4899999999999999999999965 357779999999
Q ss_pred HHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018743 109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188 (351)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (351)
.+...|++++|+.+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..+...|...|.++
T Consensus 70 ~ae~~g~~EeAi~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ye 139 (449)
T 1b89_A 70 AANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYD 139 (449)
T ss_dssp ------------------------------------------CHHHHTTTTT-------CC----------------CTT
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHH
Confidence 999999999999988877664 4557789999999999999999988874 367779999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743 189 KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 268 (351)
+|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+.
T Consensus 140 eA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~ 204 (449)
T 1b89_A 140 AAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV 204 (449)
T ss_dssp THHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT
T ss_pred HHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 999999976 46899999999999999999999987 278999999999999999999966554422
Q ss_pred hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 018743 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL--GMTEAAQNLEN 335 (351)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~ 335 (351)
..+.....++..|.+.|++++|+.+++...... +-....|+-+..+|++- ++..+.+++|.
T Consensus 205 -----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 205 -----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp -----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred -----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344556679999999999999999999988654 44566777777777654 34444444443
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.79 E-value=1.5e-15 Score=120.41 Aligned_cols=223 Identities=11% Similarity=-0.036 Sum_probs=110.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh----cCChHHHHHHHHHHHhcCCCCCCHhHH
Q 018743 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTL 139 (351)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (351)
+..++..+...+...|++++|...|++..+. .+..++..+...|.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 3444555555555555666666666555552 234445555555555 555556665555555432 34445
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 018743 140 NSMISAYGN----SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNI 211 (351)
Q Consensus 140 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 211 (351)
..+...+.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 555555555 555555555555555432 34444555555555 555555555555554432 2333444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHhHHHHHHHHhhhcCCccCHHhHHHHH
Q 018743 212 VIETFGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AGLIMKVDSILRQVENSDVILDTPFFNCII 283 (351)
Q Consensus 212 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 283 (351)
+...+.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...+++..+.+. ...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence 4444444 455555555555544432 23344444444444 4555555555554444321 33444444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhc
Q 018743 284 SAYGQ----AGDVEKMGELFLTMKER 305 (351)
Q Consensus 284 ~~~~~----~g~~~~a~~~~~~~~~~ 305 (351)
..|.. .+++++|.+.|++..+.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 44444 44455555555544443
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=1.2e-16 Score=131.85 Aligned_cols=236 Identities=6% Similarity=-0.030 Sum_probs=148.7
Q ss_pred HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN-IEKMEKWYNEFNLMGVKADIQTLNILT 178 (351)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (351)
..+|..+..++...|++++|+..++++++.. +.+..+|+.+..++...|+ +++|+..+++++... +.+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 3455556666666666666666666666653 4455566666666666664 666666666666644 34556666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh-cCCH
Q 018743 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK-AGLI 257 (351)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 257 (351)
.++...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 6666667777777777666665443 56666666666667777777777777776654 4456666666666666 4444
Q ss_pred hHH-----HHHHHHhhhcCCccCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-----
Q 018743 258 MKV-----DSILRQVENSDVILDTPFFNCIISAYGQAG--DVEKMGELFLTMKERHCVPDNITFATMIQAYNALG----- 325 (351)
Q Consensus 258 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----- 325 (351)
++| +..+++..+..+. +...|+.+..++...| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 555 3666666666555 5666766666666666 467777777666 22 2334556666667766653
Q ss_pred ----CHHHHHHHHHHH-HHhccc
Q 018743 326 ----MTEAAQNLENKM-IAMKEN 343 (351)
Q Consensus 326 ----~~~~A~~~~~~~-~~~~~~ 343 (351)
..++|+++++++ ++.+|.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG
T ss_pred chHHHHHHHHHHHHHHHHHhCch
Confidence 246777777777 665554
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=2.9e-16 Score=124.47 Aligned_cols=237 Identities=11% Similarity=-0.009 Sum_probs=117.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHH
Q 018743 103 YNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA--DIQTLNILTKS 180 (351)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 180 (351)
+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..+++....+..+ ....+..+...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3344455555555555555555555442 2333345555555555555555555555555422111 12234555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHH
Q 018743 181 YGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260 (351)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 260 (351)
+...|++++|...++...+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554322 33455555555555555555555555555442 33344444444222333455555
Q ss_pred HHHHHHhhhcCCccCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHHcCCHHHH
Q 018743 261 DSILRQVENSDVILDTPFFNCIISAYGQAGD---VEKMGELFLTMKERH-CVPD------NITFATMIQAYNALGMTEAA 330 (351)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A 330 (351)
...++++.+..+. +...+..+..++...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 5555555554433 34445555555555555 555555555554321 0122 13444555555555555555
Q ss_pred HHHHHHHHHhcccC
Q 018743 331 QNLENKMIAMKENS 344 (351)
Q Consensus 331 ~~~~~~~~~~~~~~ 344 (351)
.+.++++++.+|..
T Consensus 241 ~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 241 DAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCccH
Confidence 55555555555443
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=3e-16 Score=129.48 Aligned_cols=217 Identities=7% Similarity=0.003 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDLIEKILAEMSYLGIECSAVTYNTII 107 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (351)
..+|..+..++...|++++|++.++++.+.. +-+...|+.+..++...|+ +++|+..++++.... +.+..+|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 3455555555556666666666666655532 2334555555555556664 666666666665554 33555566666
Q ss_pred HHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCC
Q 018743 108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGR-AGM 186 (351)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 186 (351)
.++...|++++|+..|+++++.. +.+..+|..+..++.+.|++++|+..++++++.. +.+...|+.+..++.. .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 66666666666666666665552 4455555555555555666666666666555543 3344555555555555 333
Q ss_pred HHHH-----HHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 018743 187 YDKM-----RSVMDFMQKRFFFPTVVTYNIVIETFGKAG--HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254 (351)
Q Consensus 187 ~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (351)
.++| +..+++.....+. +...|..+...+...| ++++|++.+.++ +. .+.+...+..++..|.+.
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 3444 2444444443222 3444444444444444 344444444444 21 122334444444444443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=3.1e-16 Score=122.84 Aligned_cols=201 Identities=9% Similarity=0.021 Sum_probs=114.5
Q ss_pred HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179 (351)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 179 (351)
...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 4556666666667777777777777666552 4455566666666666666666666666665543 334555556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743 180 SYGRAGMYDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258 (351)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 258 (351)
.+...|++++|...++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666655521122 34445555555555666666666666555543 334455555555555555555
Q ss_pred HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
+|...++.+.+..+. +...+..+...+...|++++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555555544332 4444555555555555555555555555543
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=2.1e-17 Score=131.32 Aligned_cols=248 Identities=10% Similarity=-0.019 Sum_probs=119.1
Q ss_pred ccCChHHHHHHHHHhhccCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHH
Q 018743 41 QSGLLDEAFSTINDMKSVSDCKP--DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEE 118 (351)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 118 (351)
..|++++|+..|+++.+.....+ +..++..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34555666666665554211111 23445555555555556666666555555543 3345555555555555555555
Q ss_pred HHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 119 MESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQ 198 (351)
Q Consensus 119 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (351)
|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. |+.......+..+
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~----------------- 154 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLA----------------- 154 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHH-----------------
Confidence 555555555542 3334445555555555555555555555554432 2222222222222
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc---C
Q 018743 199 KRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL---D 275 (351)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~ 275 (351)
...|++++|...+.+..... +++...+ .++..+...++.++|...++...+..+.. +
T Consensus 155 ------------------~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 155 ------------------EQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp ------------------HHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred ------------------HHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 33445555555554444432 2222222 23444444455555555555544332210 1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743 276 TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334 (351)
Q Consensus 276 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (351)
...+..+...+...|++++|...|+++.+. .|+. +.....++...|++++|++.+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 345566666666666666666666666654 2321 222244555666666665554
No 45
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=156.34 Aligned_cols=117 Identities=12% Similarity=0.221 Sum_probs=79.8
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 018743 136 IFTLNSMISAYGNSGNIEKMEKWYNEFN---LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212 (351)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (351)
..+|+++|++|++.|++++|.++|.+|. ..|+.||..|||+||.+|++.|+.++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3467777777777777777777776654 2356677777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 018743 213 IETFGKAGH-IEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252 (351)
Q Consensus 213 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 252 (351)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 777777665 3566677777777777777777776665443
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=8.7e-17 Score=125.22 Aligned_cols=201 Identities=10% Similarity=0.106 Sum_probs=105.2
Q ss_pred CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743 99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178 (351)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (351)
....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34455556666666666666666666665542 4455566666666666666666666666665543 33455556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258 (351)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 258 (351)
..+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666665554322 44555555666666666666666666655543 334555555555666666666
Q ss_pred HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
+|...++++.+..+. +..++..+..++...|++++|.+.++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666655554433 4455555555666666666666666655553
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.78 E-value=6.6e-16 Score=118.66 Aligned_cols=202 Identities=10% Similarity=0.023 Sum_probs=109.2
Q ss_pred CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743 99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178 (351)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (351)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 45556666666666666666666666666552 3445556666666666666666666666665543 33445555555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 018743 179 KSYGRA-GMYDKMRSVMDFMQKRFFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256 (351)
Q Consensus 179 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 256 (351)
..+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 556666 66666666665555421112 23445555555555555555555555555442 2234455555555555555
Q ss_pred HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
+++|...++++.+..+..+...+..+...+...|+.+.|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555555443312444444444455555555555555555543
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.78 E-value=9.3e-16 Score=120.13 Aligned_cols=199 Identities=9% Similarity=-0.069 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH
Q 018743 67 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAY 146 (351)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (351)
.+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHH
Confidence 34444444444444444444444444432 2234444444444444444444444444444432 22334444444444
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 018743 147 GNSGNIEKMEKWYNEFNLMGVKA-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKM 225 (351)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 225 (351)
...|++++|.++++++...+..| +...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 44444444444444444311112 2333444444444444444444444444443221 334444444444444444444
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743 226 EEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS 270 (351)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 270 (351)
...++++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44444444332 233344444444444444444444444444443
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=5.1e-17 Score=129.02 Aligned_cols=225 Identities=9% Similarity=-0.055 Sum_probs=168.8
Q ss_pred ccccCCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGL---KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (351)
.+...|++++|+..|+.+.+... +.+..++..+...+...|++++|+..|+++.+.. +.+..+|..+...+...|
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTT
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHcc
Confidence 34567999999999999998742 2256789999999999999999999999998753 456888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 018743 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159 (351)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (351)
++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+.. |+.......+..+...|++++|...+
T Consensus 92 ~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999875 5578899999999999999999999999998863 33334444445556779999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 160 NEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP---TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (351)
+...... +++...+ .++..+...++.++|...+.......... +...+..+...+...|++++|...+++....
T Consensus 168 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 168 KQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 8777653 3333333 36666677777777777777765432110 1344555555556666666666666655554
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=1.1e-15 Score=117.49 Aligned_cols=203 Identities=11% Similarity=-0.002 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 107 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (351)
++.++..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 34445555555555555555555555555421 2234445555555555555555555555555443 33444555555
Q ss_pred HHHhhc-CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018743 108 DGYGKA-KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186 (351)
Q Consensus 108 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (351)
..+... |++++|...++++.+....+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 555555 55555555555554411112223344444455555555555555555544432 2234444444444444555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234 (351)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (351)
+++|...++.+....+..+...+..+...+...|+.+.+..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555544444432212333344444444444444444444444443
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.77 E-value=1.6e-16 Score=123.70 Aligned_cols=199 Identities=7% Similarity=0.008 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147 (351)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (351)
|..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVYV 102 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHHH
Confidence 3333333444444444444444444332 2234444444444444444444444444444331 223344444444444
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 018743 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEE 227 (351)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 227 (351)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444444332 23344444444555555555555555555444322 134445555555555555555555
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272 (351)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 272 (351)
.++++.+.. +.+..++..+...+...|++++|...++++.+..+
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 555555442 33445555555556666666666666665555443
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=1.2e-14 Score=115.22 Aligned_cols=224 Identities=8% Similarity=-0.055 Sum_probs=118.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK----FHRFDLIEKILAEMSYLGIECSAVTY 103 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 103 (351)
++.++..+...+...|++++|++.|++..+ +.+...+..+...+.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 444555555555555555555555555554 2233445555555555 555555555555555543 44455
Q ss_pred HHHHHHHhh----cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018743 104 NTIIDGYGK----AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN----SGNIEKMEKWYNEFNLMGVKADIQTLN 175 (351)
Q Consensus 104 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (351)
..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|+.+|++..+.+ +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 555555555 555555555555554431 34445555555555 555555555555555533 334444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743 176 ILTKSYGR----AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK----AGHIEKMEEYFKKMKHRGMKPNSITYCSL 247 (351)
Q Consensus 176 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (351)
.+...+.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 45555554 555555555555555432 33444455555555 555555555555555543 13444455
Q ss_pred HHHHHh----cCCHhHHHHHHHHhhhcC
Q 018743 248 VSAYSK----AGLIMKVDSILRQVENSD 271 (351)
Q Consensus 248 ~~~~~~----~g~~~~a~~~~~~~~~~~ 271 (351)
...+.. .+++++|...+++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555555 555555555555555544
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.2e-16 Score=134.16 Aligned_cols=302 Identities=14% Similarity=0.046 Sum_probs=222.7
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC
Q 018743 26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD--VYTYSILIKSCTKFHRFDLIEKILAEMSYL----GI-EC 98 (351)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~ 98 (351)
.+....+......+...|++++|+..|++..+.....|. ..++..+...+...|++++|...+++.... +. +.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 446677788888999999999999999998875321221 356788888899999999999999887543 21 12
Q ss_pred CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHhcCCC--------------------HHH
Q 018743 99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGN--------------------IEK 154 (351)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~ 154 (351)
...++..+...+...|++++|...+++..+.....++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 3557788888999999999999999887654211112 3467788888999999 999
Q ss_pred HHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCCHHH
Q 018743 155 MEKWYNEFNLM----GVK-ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-FPT----VVTYNIVIETFGKAGHIEK 224 (351)
Q Consensus 155 a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~ 224 (351)
|.+.+++.... +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99988876542 111 1234678888999999999999999988765311 112 2377888899999999999
Q ss_pred HHHHHHHHHHc----CCCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-----CHHhHHHHHHHHHhcCCHHH
Q 018743 225 MEEYFKKMKHR----GMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-----DTPFFNCIISAYGQAGDVEK 294 (351)
Q Consensus 225 a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~ 294 (351)
|...+++.... +..+ ...++..+...+...|++++|...+++..+..... ...++..+...+...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999987653 1111 14577888999999999999999999876532211 15577888999999999999
Q ss_pred HHHHHHHHHhc----CCC-CCHHHHHHHHHHHHHcCCH
Q 018743 295 MGELFLTMKER----HCV-PDNITFATMIQAYNALGMT 327 (351)
Q Consensus 295 a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~ 327 (351)
|.+.+++..+. +.. ....++..+...+...|+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99999987643 211 1244677777888887765
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.75 E-value=2.2e-16 Score=133.03 Aligned_cols=275 Identities=8% Similarity=-0.025 Sum_probs=186.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHhhcCChHHHHHHHHHHHhcC---C-CCCCHhH
Q 018743 67 TYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA----VTYNTIIDGYGKAKKFEEMESSFSAMVESG---G-CHPDIFT 138 (351)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~ 138 (351)
.+..+...+...|++++|...|+++.+.+ +.+. .++..+...|...|++++|...+++..+.. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455566777788888888888777764 2233 466677777778888888888777765431 0 1223345
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 018743 139 LNSMISAYGNSGNIEKMEKWYNEFNLM----G-VKADIQTLNILTKSYGRAGM-----------------YDKMRSVMDF 196 (351)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 196 (351)
+..+...+...|++++|...+++.... + .+....++..+...+...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 667777778888888888887776543 1 11224466777777888888 8888887776
Q ss_pred HHHc----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cc----HHHHHHHHHHHHhcCCHhHHHHHHHH
Q 018743 197 MQKR----FF-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-PN----SITYCSLVSAYSKAGLIMKVDSILRQ 266 (351)
Q Consensus 197 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 266 (351)
..+. +. ......+..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5432 11 112346777778888888888888888887653100 11 23677788888888999999988888
Q ss_pred hhhcCCc-----cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743 267 VENSDVI-----LDTPFFNCIISAYGQAGDVEKMGELFLTMKERH----CV-PDNITFATMIQAYNALGMTEAAQNLENK 336 (351)
Q Consensus 267 ~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (351)
..+.... ....++..+...+...|++++|...+++..+.. .. ....++..+...|...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7653221 124567788888889999999999988876431 11 1134677788888899999999999988
Q ss_pred HHHhcc
Q 018743 337 MIAMKE 342 (351)
Q Consensus 337 ~~~~~~ 342 (351)
+++...
T Consensus 369 al~~~~ 374 (411)
T 4a1s_A 369 HLQLAX 374 (411)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 877654
No 55
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=1.4e-14 Score=132.56 Aligned_cols=296 Identities=11% Similarity=0.081 Sum_probs=155.2
Q ss_pred cccccCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC
Q 018743 2 VMLGKCKQPEQASLLFEVMLSDGL--KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH 79 (351)
Q Consensus 2 ~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (351)
..|...|.+.+|+++++++.-.+- .-+...-+.++.+..+. +..+..+..++... . + ...+...+...|
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-~----d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-Y----D---APDIANIAISNE 1063 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-c----c---HHHHHHHHHhCC
Confidence 346678888899999988874321 12334444455444333 22333333333221 0 0 111233333444
Q ss_pred CHHHHHHHHHHHHHcC---------------------CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhH
Q 018743 80 RFDLIEKILAEMSYLG---------------------IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT 138 (351)
Q Consensus 80 ~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 138 (351)
.+++|..+|++..... -.-+..+|..+..++...|++++|...|.+. .|...
T Consensus 1064 lyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~sa 1136 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSS 1136 (1630)
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHH
Confidence 4444444444321000 0013445555555666666666666655432 23444
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 018743 139 LNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218 (351)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (351)
|..++.++.+.|++++|.+++....+.. +++...+.++.+|.+.+++++..... . .++...|..+...|..
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHh
Confidence 5555566666666666666665544432 22222223555555555555322221 1 2234444455556666
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298 (351)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 298 (351)
.|++++|..+|... ..|..++.++.+.|++++|.+.+++.. +..+|..+..+|...|++..|...
T Consensus 1208 eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred cCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHH
Confidence 66666666666553 245566666666666666666665542 345555555555555555555554
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743 299 FLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 299 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 342 (351)
... +..++..+..++..|.+.|.+++|+++++..+..++
T Consensus 1273 gl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1273 GLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 432 233566677888888888999999999888876653
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.74 E-value=6.2e-16 Score=129.88 Aligned_cols=282 Identities=12% Similarity=0.043 Sum_probs=215.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCC-
Q 018743 62 KPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECS----AVTYNTIIDGYGKAKKFEEMESSFSAMVESG---GCH- 133 (351)
Q Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~- 133 (351)
.+....+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++..+.. +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4556667778888999999999999999998875 334 3578888999999999999999999875431 111
Q ss_pred CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHhcCC--------------------HH
Q 018743 134 PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-A----DIQTLNILTKSYGRAGM--------------------YD 188 (351)
Q Consensus 134 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~ 188 (351)
....++..+...+...|++++|...+++....... + ...++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 22456788889999999999999999987653100 1 14477888899999999 99
Q ss_pred HHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-Cc----cHHHHHHHHHHHHhcCCHh
Q 018743 189 KMRSVMDFMQKR----FFF-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM-KP----NSITYCSLVSAYSKAGLIM 258 (351)
Q Consensus 189 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~ 258 (351)
+|...++..... +.. ....++..+...+...|++++|...+++..+... .+ ...++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998876542 111 1235678888999999999999999999875310 11 1347888999999999999
Q ss_pred HHHHHHHHhhhcCCcc-C----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHHcCCHH
Q 018743 259 KVDSILRQVENSDVIL-D----TPFFNCIISAYGQAGDVEKMGELFLTMKERHC-VPD----NITFATMIQAYNALGMTE 328 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~ 328 (351)
+|...+++..+..... + ..++..+...+...|++++|.+.+++..+... .++ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999876532211 1 55788889999999999999999999875311 111 557888899999999999
Q ss_pred HHHHHHHHHHHhcccC
Q 018743 329 AAQNLENKMIAMKENS 344 (351)
Q Consensus 329 ~A~~~~~~~~~~~~~~ 344 (351)
+|...+++.++.....
T Consensus 325 ~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 325 QAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998775443
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=1.1e-14 Score=117.53 Aligned_cols=217 Identities=7% Similarity=-0.051 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh-------cCCh-------HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743 82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGK-------AKKF-------EEMESSFSAMVESGGCHPDIFTLNSMISAYG 147 (351)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (351)
++|..+|+++.... |.+...|..++..+.. .|++ ++|..+|++.++.- .+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence 45555666655543 4455555555555442 3443 55555555555420 1223345555555555
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-hcCCHHH
Q 018743 148 NSGNIEKMEKWYNEFNLMGVKAD-IQ-TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG-KAGHIEK 224 (351)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 224 (351)
+.|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+.... +...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555542 222 22 4555555555555555555555555443221 2222222221111 1355555
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC-Ccc--CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 225 MEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD-VIL--DTPFFNCIISAYGQAGDVEKMGELFLT 301 (351)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 301 (351)
|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555544432 2234444455555555555555555555554431 111 233444444444555555555555555
Q ss_pred HHh
Q 018743 302 MKE 304 (351)
Q Consensus 302 ~~~ 304 (351)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.74 E-value=6e-16 Score=126.39 Aligned_cols=158 Identities=13% Similarity=0.047 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-ccHHHHHHHHHHHHhcCC
Q 018743 187 YDKMRSVMDFMQKR----FF-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMK-PNSITYCSLVSAYSKAGL 256 (351)
Q Consensus 187 ~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 256 (351)
+++|...++..... +. ......+..+...+...|++++|...+++..+. +.+ ....++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 66666655554321 11 112345667777788888888888888876543 111 112367778888888999
Q ss_pred HhHHHHHHHHhhhcCCc-----cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHHcCC
Q 018743 257 IMKVDSILRQVENSDVI-----LDTPFFNCIISAYGQAGDVEKMGELFLTMKER----HCV-PDNITFATMIQAYNALGM 326 (351)
Q Consensus 257 ~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~ 326 (351)
+++|...+++..+.... ....++..+...+...|++++|...++++.+. +.. ....++..+...|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999988887643211 11456778888999999999999999987643 111 114467788889999999
Q ss_pred HHHHHHHHHHHHHhcccC
Q 018743 327 TEAAQNLENKMIAMKENS 344 (351)
Q Consensus 327 ~~~A~~~~~~~~~~~~~~ 344 (351)
+++|...++++++..+..
T Consensus 319 ~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 319 HDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 999999999998876553
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.72 E-value=1.2e-15 Score=124.48 Aligned_cols=277 Identities=14% Similarity=0.020 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHh
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD--VYTYSILIKSCTKFHRFDLIEKILAEMSYL----GI-ECSAV 101 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 101 (351)
...+......+...|++++|+..|+++.+.....|. ...+..+...+...|++++|...+++.... +. +....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345556677788888999999999888774211111 356777788888888999888888876543 11 12355
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHhcCCC--------------------HHHHHH
Q 018743 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGN--------------------IEKMEK 157 (351)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 157 (351)
++..+...+...|++++|...+++..+.....++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6777888888899999999988887653211122 3367777888888888 888888
Q ss_pred HHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHhHHHHHHHHHhcCCHHHHHH
Q 018743 158 WYNEFNLM----GV-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-----FPTVVTYNIVIETFGKAGHIEKMEE 227 (351)
Q Consensus 158 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 227 (351)
.+++.... +. +.....+..+...+...|++++|...+++..+... ......+..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776432 11 11234677788889999999999999988754311 1112367788889999999999999
Q ss_pred HHHHHHHcC----CCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-----cCHHhHHHHHHHHHhcCCHHHHHH
Q 018743 228 YFKKMKHRG----MKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-----LDTPFFNCIISAYGQAGDVEKMGE 297 (351)
Q Consensus 228 ~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 297 (351)
.+++..+.. .++ ...++..+...+...|++++|...+++..+.... ....++..+...+...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 999876531 111 1457788889999999999999999987653211 124467788999999999999999
Q ss_pred HHHHHHhc
Q 018743 298 LFLTMKER 305 (351)
Q Consensus 298 ~~~~~~~~ 305 (351)
.++++.+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998864
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.72 E-value=1.2e-15 Score=128.50 Aligned_cols=277 Identities=10% Similarity=-0.028 Sum_probs=211.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHh
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD--VYTYSILIKSCTKFHRFDLIEKILAEMSYL----G-IECSAV 101 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 101 (351)
...+..+...+...|++++|+..|+++.+...-.+. ...+..+...+...|++++|...+++..+. + .+....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345556777889999999999999999885321111 246888888999999999999999988654 1 133456
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCC----CCCCHhHHHHHHHHHhcCCC-----------------HHHHHHHHH
Q 018743 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGG----CHPDIFTLNSMISAYGNSGN-----------------IEKMEKWYN 160 (351)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 160 (351)
++..+...|...|++++|...+++..+... .+....++..+...+...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 788899999999999999999998765410 12234478888899999999 999999988
Q ss_pred HHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743 161 EFNLM----GV-KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PT----VVTYNIVIETFGKAGHIEKMEEYFK 230 (351)
Q Consensus 161 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 230 (351)
+.... +. +.....+..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 86542 11 122347788889999999999999999987653211 11 2367888999999999999999999
Q ss_pred HHHHcCC--C---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-----cCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743 231 KMKHRGM--K---PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-----LDTPFFNCIISAYGQAGDVEKMGELFL 300 (351)
Q Consensus 231 ~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~ 300 (351)
+...... . ....++..+...+...|++++|...+++..+.... ....++..+...+...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8775421 0 12567888999999999999999999987653211 124477888999999999999999999
Q ss_pred HHHhc
Q 018743 301 TMKER 305 (351)
Q Consensus 301 ~~~~~ 305 (351)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.72 E-value=8.5e-15 Score=108.82 Aligned_cols=171 Identities=15% Similarity=0.053 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 018743 170 DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVS 249 (351)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (351)
+..+|..+...+...|++++|...|++..+..+. +...+..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4556777777777777777777777777665443 56667777777777777777777777776653 445666666777
Q ss_pred HHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 018743 250 AYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329 (351)
Q Consensus 250 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 329 (351)
.+...++++.+...+.+..+..+. +...+..+..++.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 777777787787777777766554 66777777777888888888888888777652 3356677777788888888888
Q ss_pred HHHHHHHHHHhcccC
Q 018743 330 AQNLENKMIAMKENS 344 (351)
Q Consensus 330 A~~~~~~~~~~~~~~ 344 (351)
|++.|+++++.+|..
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 888888887776653
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.71 E-value=2.8e-15 Score=125.03 Aligned_cols=300 Identities=11% Similarity=-0.027 Sum_probs=209.7
Q ss_pred HhccCChHHHHHHHHHhhccC-CC--CccHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCCHhH
Q 018743 39 YGQSGLLDEAFSTINDMKSVS-DC--KPDVYTYSILIKS--CTKFHRFDLIE-----------KILAEMSYLGIECSAVT 102 (351)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 102 (351)
+.+.+++++|..+++.+.+.. .+ .++...|-.++.. ....++++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 456889999999888876532 12 2333444444432 11223333333 5666654432 12222
Q ss_pred ------HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC----CHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--C---
Q 018743 103 ------YNTIIDGYGKAKKFEEMESSFSAMVESGGCHP----DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG--V--- 167 (351)
Q Consensus 103 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~--- 167 (351)
+......+...|++++|...+++..+.....+ ...++..+...+...|++++|...+++..+.. .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 22356677889999999999999876421112 23578888899999999999999998876531 1
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC
Q 018743 168 -KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PT----VVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GM 237 (351)
Q Consensus 168 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 237 (351)
+....++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112356788889999999999999999887653111 11 246788899999999999999999998762 33
Q ss_pred -CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC----CccCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCC
Q 018743 238 -KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSD----VILDTPFFNCIISAYGQAGD---VEKMGELFLTMKERHCVP 309 (351)
Q Consensus 238 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p 309 (351)
+....++..+...+...|++++|...+++..+.. -......+..+...+...|+ +++|+.++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 3456778999999999999999999999876532 11122335677888888998 77777777765 2222
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 310 -DNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 310 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
....+..+...|...|++++|...++++++....
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3446778889999999999999999999886554
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.71 E-value=7.7e-15 Score=122.35 Aligned_cols=296 Identities=12% Similarity=-0.002 Sum_probs=210.1
Q ss_pred cccCCCHHHHHHHHHHHHhC--CCCCCH--HHHHHHHHH--HhccCChHHHH-----------HHHHHhhccCCCCccHH
Q 018743 4 LGKCKQPEQASLLFEVMLSD--GLKPSV--DVYTALVSA--YGQSGLLDEAF-----------STINDMKSVSDCKPDVY 66 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 66 (351)
+.+.+++++|..+++++.+. ....+. ..|-.++.. ..-.++++.+. +.++.+... +.+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~~~ 98 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QARLT 98 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc---CCCch
Confidence 45789999999999998765 222333 333444332 12223344444 666666541 12222
Q ss_pred H------HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC-
Q 018743 67 T------YSILIKSCTKFHRFDLIEKILAEMSYL----GIEC-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP- 134 (351)
Q Consensus 67 ~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 134 (351)
. +......+...|++++|...+++..+. +-++ ...++..+..+|...|++++|...+++..+...-.+
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 222455678899999999999998764 2111 356788899999999999999999998876421122
Q ss_pred ----CHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C
Q 018743 135 ----DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-A----DIQTLNILTKSYGRAGMYDKMRSVMDFMQKR----F 201 (351)
Q Consensus 135 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 201 (351)
...+++.+...|...|++++|...+++..+.... + ...++..+...|...|++++|...+++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 2346888889999999999999999987653111 1 1247888999999999999999999988762 2
Q ss_pred C-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHhcCC---HhHHHHHHHHhhhcCCc
Q 018743 202 F-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMKPNSITYCSLVSAYSKAGL---IMKVDSILRQVENSDVI 273 (351)
Q Consensus 202 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~ 273 (351)
. +....++..+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++.... .
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~ 336 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--A 336 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--H
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--H
Confidence 2 334677888999999999999999999987653 212223345678888888898 77787777776321 2
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
.....+..+...|...|++++|.+.|++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2345677899999999999999999999874
No 64
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=9.4e-14 Score=127.20 Aligned_cols=286 Identities=12% Similarity=0.152 Sum_probs=149.3
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDL 83 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (351)
+...|.+++|..+|++.. . ...+.+.++. ..|++++|.++.++.. +..+|..+..++...|++++
T Consensus 1059 ai~lglyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCHHH
Confidence 345666677766666642 1 2222233322 4445555555555432 23445555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 84 IEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
|.+.|.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+.
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 55555432 244455555555555555555555555544331 22222223445555555544322221
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------
Q 018743 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-------- 235 (351)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------- 235 (351)
. .++...+..+...|...|++++|...|... ..|..+..++.+.|++++|.+.+++....
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 1258 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence 1 223333444555555555555555555442 23444555555555555555444432110
Q ss_pred ----------------CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc--CCHHHHHH
Q 018743 236 ----------------GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA--GDVEKMGE 297 (351)
Q Consensus 236 ----------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~ 297 (351)
++..++..+..++..|.+.|.+++|+.+++.....+.. ....|+.+...+++. ++..++.+
T Consensus 1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-H~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-HhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 12234455667777788888888888888777665522 555666666666654 34444445
Q ss_pred HHHHHHhcCCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 018743 298 LFLTMKERHCVP------DNITFATMIQAYNALGMTEAAQN 332 (351)
Q Consensus 298 ~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 332 (351)
+|..-.. ++| +...|.-++-.|.+.|+++.|..
T Consensus 1338 ~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 LFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4443222 222 45678888888999999998873
No 65
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=1.9e-15 Score=128.41 Aligned_cols=308 Identities=11% Similarity=0.048 Sum_probs=192.3
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh---HHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC-
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLL---DEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH- 79 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 79 (351)
+.+.|++++|.++|+...+.| ++.++..+...+...|+. ++|+.+|++..+. +...+..+...+...+
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHTC--
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCC
Confidence 345678888888888887764 344555666666777777 7888888887751 4444555555444443
Q ss_pred ----CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhc-----------------------------------CChH---
Q 018743 80 ----RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA-----------------------------------KKFE--- 117 (351)
Q Consensus 80 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------------------~~~~--- 117 (351)
++++|..+|++..+.|.+ + .+..|...|... +.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 677888888888776522 2 333444444333 3222
Q ss_pred -HHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHH
Q 018743 118 -EMESSFSAMVESGGCHPDIFTLNSMISAYGNSG---NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA----GMYDK 189 (351)
Q Consensus 118 -~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 189 (351)
.+..+++... ..++..+..+...|...| +.++|+++|++..+.| +++...+..+...|... +++++
T Consensus 162 ~~a~~~~~~a~-----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 162 DDVERICKAAL-----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHHT-----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 2222232221 223336777888888888 8889999999888877 56666556677777655 68889
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-----CHhHHH
Q 018743 190 MRSVMDFMQKRFFFPTVVTYNIVIET-F--GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG-----LIMKVD 261 (351)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~ 261 (351)
|...|+... . -++..+..+... + ...+++++|...|++..+.| +...+..|...|. .| ++++|.
T Consensus 236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 999998877 3 244555566655 3 46789999999999988876 5566777777776 45 899999
Q ss_pred HHHHHhhhcCCccCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 018743 262 SILRQVENSDVILDTPFFNCIISAYGQ----AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA----LGMTEAAQNL 333 (351)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 333 (351)
..|++.. .+ ++..+..|...|.. ..++++|.+.|++..+.|. ......|...|.. ..+.++|..+
T Consensus 308 ~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 308 AHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9998877 32 66777777777766 3489999999999888763 4455666666664 4588999999
Q ss_pred HHHHHHhccc
Q 018743 334 ENKMIAMKEN 343 (351)
Q Consensus 334 ~~~~~~~~~~ 343 (351)
+++..+.+..
T Consensus 381 ~~~A~~~g~~ 390 (452)
T 3e4b_A 381 SQLAKAQDTP 390 (452)
T ss_dssp HHHHHTTCCH
T ss_pred HHHHHHCCCH
Confidence 9988877654
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=2.5e-13 Score=109.55 Aligned_cols=239 Identities=8% Similarity=0.005 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHHhcc----CCh----HHHHHHHHHhhccCCCCccHHHHHHHHHHHHh-------cCCH-------HHHH
Q 018743 28 SVDVYTALVSAYGQS----GLL----DEAFSTINDMKSVSDCKPDVYTYSILIKSCTK-------FHRF-------DLIE 85 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~ 85 (351)
+...|...+..-.+. ++. ++|...|++..... +.+...|..++..+.. .|++ ++|.
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 345666666654443 233 57777888877643 4456667777666543 4665 7788
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHh-HHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743 86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIF-TLNSMISAYGNSGNIEKMEKWYNEFNL 164 (351)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (351)
.+|++..+.-.+.+...|..++..+.+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888887763114456677788888888888888888888887642 22333 677777777788888888888888776
Q ss_pred cCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCc--c
Q 018743 165 MGVKADIQTLNILTKSYG-RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG-MKP--N 240 (351)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~ 240 (351)
.. +.+...|...+.... ..|+.++|..+|+...+..+. +...|..++..+.+.|++++|..+|++..... ++| .
T Consensus 163 ~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 163 DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp ST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred cC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 54 334444443333322 258888888888877665333 66777777777888888888888888887752 344 3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272 (351)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 272 (351)
...|..++......|+.+.|..+++++.+..+
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 56677777777778888888888888776644
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=1.1e-15 Score=123.50 Aligned_cols=251 Identities=15% Similarity=0.135 Sum_probs=125.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc------C
Q 018743 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYL-------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES------G 130 (351)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 130 (351)
+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++..+. .
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666677777777777777766552 22334455666666666667777777666666543 1
Q ss_pred CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 018743 131 GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYN 210 (351)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (351)
..+....++..+...+...|++++|...+++..+... .......+.....+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVLGKDHPDVAKQLN 157 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHHCTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------------------------HhcCCCChHHHHHHH
Confidence 1122233455555556666666666666655543200 000000011223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc------CCCc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC-------Ccc--
Q 018743 211 IVIETFGKAGHIEKMEEYFKKMKHR------GMKP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSD-------VIL-- 274 (351)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~-- 274 (351)
.+...+...|++++|..+++++.+. +..| ...++..+...+...|++++|...++++.+.. ..+
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4444455555555555555554432 1111 22344555555555555555555555544321 000
Q ss_pred -----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 275 -----DTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 275 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
....+..+...+...+.+.++...++..... .+.+..++..+..+|.+.|++++|.+.++++++..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1112223333444556666666777766653 2334567888888999999999999999998887654
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.68 E-value=9.7e-15 Score=124.81 Aligned_cols=212 Identities=11% Similarity=-0.012 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018743 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNI-EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVM 194 (351)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (351)
++++++.++..... .+.+...+..+...+...|++ ++|++.|++..+.. +.+...+..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44455555554433 233555566666666666666 66666666665543 334556666666666666666666666
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc--------CCH
Q 018743 195 DFMQKRFFFPTVVTYNIVIETFGKA---------GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA--------GLI 257 (351)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 257 (351)
++..+.. |+...+..+...+... |++++|...+++..+.. +.+...+..+..++... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 6665542 3455566666666666 66666666666666653 34556666666666666 666
Q ss_pred hHHHHHHHHhhhcCCc--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743 258 MKVDSILRQVENSDVI--LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334 (351)
Q Consensus 258 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (351)
++|...|++..+..+. -+...|..+..+|...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777666665431 256666666667777777777777777666542 224455666666666666666666543
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.68 E-value=1e-14 Score=124.75 Aligned_cols=213 Identities=8% Similarity=-0.069 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh-HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHH
Q 018743 81 FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF-EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWY 159 (351)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (351)
++++...+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+..+|...|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556666777665543 45788888899999999999 99999999998874 556788999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--------CCH
Q 018743 160 NEFNLMGVKADIQTLNILTKSYGRA---------GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA--------GHI 222 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 222 (351)
++..+. .|+...+..+...+... |++++|...+++..+..+. +...|..+..++... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 998875 46678888889999998 9999999999998887543 678888888888888 899
Q ss_pred HHHHHHHHHHHHcCCC---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743 223 EKMEEYFKKMKHRGMK---PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELF 299 (351)
Q Consensus 223 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 299 (351)
++|...|++..+.. + .+...+..+..++...|++++|...|++..+..+. +...+..+..++...|++++|++.+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998864 3 47888999999999999999999999999888765 6778888889999999999888765
Q ss_pred HH
Q 018743 300 LT 301 (351)
Q Consensus 300 ~~ 301 (351)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 70
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=3.8e-14 Score=120.39 Aligned_cols=310 Identities=15% Similarity=0.085 Sum_probs=199.6
Q ss_pred ccCCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-----ChHHHHHHHHHhhccCCCCccHHHHHHHHHH--
Q 018743 5 GKCKQP---EQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG-----LLDEAFSTINDMKSVSDCKPDVYTYSILIKS-- 74 (351)
Q Consensus 5 ~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-- 74 (351)
...|+. ++|..+|++..+. ++..+..+...+...+ ++++|+..|++..+ .|. ++ .+..|...
T Consensus 46 ~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~-~g~-~~--A~~~Lg~~y~ 117 (452)
T 3e4b_A 46 VGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFA-NGE-GN--TLIPLAMLYL 117 (452)
T ss_dssp -----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH-TTC-SS--CHHHHHHHHH
T ss_pred HccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH-CCC-HH--HHHHHHHHHH
Confidence 345555 7788888777643 4555666666444444 66778888877766 322 22 22233333
Q ss_pred ---------------------------------HHhcCC----HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcC---
Q 018743 75 ---------------------------------CTKFHR----FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK--- 114 (351)
Q Consensus 75 ---------------------------------~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 114 (351)
+...+. .+.+..+++... ..++..+..|...|...|
T Consensus 118 ~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~ 193 (452)
T 3e4b_A 118 QYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKKQQPE 193 (452)
T ss_dssp HCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHH
T ss_pred hCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcc
Confidence 333332 222333333322 234447888888999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCH
Q 018743 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS----GNIEKMEKWYNEFNLMGVKADIQTLNILTKS-Y--GRAGMY 187 (351)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~ 187 (351)
+.++|++.|++..+.+ +++...+..+...|... +++++|.++|++.. +.+...+..+... + ...+++
T Consensus 194 ~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~ 267 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDV 267 (452)
T ss_dssp HHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCH
T ss_pred cHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCH
Confidence 9999999999998875 66666667777777665 79999999999987 3455666677766 4 568999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh----cCCHh
Q 018743 188 DKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-----HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK----AGLIM 258 (351)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 258 (351)
++|...|++..+.| +...+..+...|. .| ++++|...|++.. .| +......|...|.. ..+++
T Consensus 268 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~ 339 (452)
T 3e4b_A 268 EQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQ 339 (452)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHH
Confidence 99999999998875 5667777777776 55 9999999999887 43 56777777777766 34999
Q ss_pred HHHHHHHHhhhcCCccCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743 259 KVDSILRQVENSDVILDTPFFNCIISAYGQ----AGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (351)
+|...|+...+.|. ......|...|.. ..+.++|...|+...+.|.. +.......+......++.++|.++.
T Consensus 340 ~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~ 415 (452)
T 3e4b_A 340 KALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLV 415 (452)
T ss_dssp HHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999988763 4456677777764 46899999999999988743 3333333333333345678888888
Q ss_pred HHHHHhcccC
Q 018743 335 NKMIAMKENS 344 (351)
Q Consensus 335 ~~~~~~~~~~ 344 (351)
++-.+..+..
T Consensus 416 ~~~~~~~~~~ 425 (452)
T 3e4b_A 416 QQELAARGTL 425 (452)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHhcccc
Confidence 8877765543
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=2.3e-15 Score=121.62 Aligned_cols=248 Identities=15% Similarity=0.114 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccC------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVS------DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL------G 95 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 95 (351)
+..++..+...+...|++++|+..++++.+.. ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 56788999999999999999999999988620 12334567888899999999999999999998764 2
Q ss_pred -CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC------CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc---
Q 018743 96 -IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--- 165 (351)
Q Consensus 96 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 165 (351)
.+....++..+...+...|++++|...+++..+.. ..+.....+..+...+...|++++|.++++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 13346678889999999999999999999987651 11223446777788888888888888888887653
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 166 ---GVKA-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-------FPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234 (351)
Q Consensus 166 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (351)
+..| ...++..+...+...|++++|...++++..... .+.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 1112 234566666677777777777777766654310 000000000
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 235 RGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
....+..+...+...+.+.++...+.......+. ...++..+..+|.+.|++++|.+.|++..+
T Consensus 243 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 -----HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----HHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111222222333445555555555555543322 455667777777777777777777777654
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=5.5e-14 Score=104.39 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=81.5
Q ss_pred CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018743 99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILT 178 (351)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (351)
+..+|..+...|...|++++|++.|++.++.. |.+..++..+..++.+.|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 44555555566666666666666666655542 3344555555555555555555555555554432 23334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258 (351)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 258 (351)
..+...++++.+...+.......+. +...+..+...+...|++++|++.|++..+.. +.+..++..+..++.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 4445555555555555544443222 33444444444444444444444444444432 223444444444444444444
Q ss_pred HHHHHHHHhhh
Q 018743 259 KVDSILRQVEN 269 (351)
Q Consensus 259 ~a~~~~~~~~~ 269 (351)
+|...|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.65 E-value=9e-13 Score=109.39 Aligned_cols=303 Identities=10% Similarity=0.004 Sum_probs=188.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----Hh
Q 018743 31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV----YTYSILIKSCTKFHRFDLIEKILAEMSYLGI-ECS----AV 101 (351)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 101 (351)
.+......+...|++++|...+++...... ..+. .++..+...+...|++++|...+++...... ..+ ..
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344455566778889999888888776332 1122 2455566677788888888888887765311 111 22
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCC--C-CHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC----CCH
Q 018743 102 TYNTIIDGYGKAKKFEEMESSFSAMVESG---GCH--P-DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK----ADI 171 (351)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 171 (351)
++..+...+...|++++|...+++..+.. +.+ | ....+..+...+...|++++|...+++....... ...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 35566777888888888888888876532 111 2 2335566777788888888888888887653321 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCc---cHH
Q 018743 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--VVTYN----IVIETFGKAGHIEKMEEYFKKMKHRGMKP---NSI 242 (351)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 242 (351)
..+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4566777778888888888888887755321111 11111 22334667888888888887766532111 123
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhc----CCccCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018743 243 TYCSLVSAYSKAGLIMKVDSILRQVENS----DVILDT-PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATM 317 (351)
Q Consensus 243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 317 (351)
.+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++.....- . ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccH
Confidence 4566777778888888888888776532 211122 2555666777788888888888887765310 1 112
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743 318 IQAYNALGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~~~~~~~~ 342 (351)
+..+...| +....+++.+....+
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHHcc--HHHHHHHHHHHhCCC
Confidence 23344445 566777777766655
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.64 E-value=2.4e-13 Score=113.06 Aligned_cols=313 Identities=12% Similarity=0.022 Sum_probs=213.0
Q ss_pred CCCHHHHHHHHHHH--hccCChHHHHHHHHHhhccC-CC--CccHHHHHHHHHHH--HhcCCHHHHH---------HHHH
Q 018743 26 KPSVDVYTALVSAY--GQSGLLDEAFSTINDMKSVS-DC--KPDVYTYSILIKSC--TKFHRFDLIE---------KILA 89 (351)
Q Consensus 26 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~~l~~~~--~~~~~~~~a~---------~~~~ 89 (351)
.|+..+-+.+-..| ...+++++|..+++.+.+.. .+ .++...|-.++..- ...+...... ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45556666666555 78899999999998865421 11 23344444444431 1112222222 5555
Q ss_pred HHHHcCCCCCH----hHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743 90 EMSYLGIECSA----VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGNIEKMEKWYNE 161 (351)
Q Consensus 90 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (351)
.+.....+.+. ..+......+...|++++|...|++..+.....++ ..++..+...+...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432211111 12334455677899999999999998764221222 34678888999999999999999988
Q ss_pred HHhcC--C---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743 162 FNLMG--V---K-ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF----FF-PTVVTYNIVIETFGKAGHIEKMEEYFK 230 (351)
Q Consensus 162 ~~~~~--~---~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 230 (351)
..... . . ....++..+...|...|++++|...+++..+.. .. ....++..+..++...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 76521 1 1 124567888999999999999999998876531 11 123567788899999999999999999
Q ss_pred HHHHc----CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc----cCHHhHHHHHHHHHhcCC---HHHHHHHH
Q 018743 231 KMKHR----GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI----LDTPFFNCIISAYGQAGD---VEKMGELF 299 (351)
Q Consensus 231 ~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~---~~~a~~~~ 299 (351)
+..+. +.+....++..+...+.+.|++++|...+++..+.... .....+..+...+...++ +.+|+..+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 98761 22444678889999999999999999999998764221 123345666667777788 77777777
Q ss_pred HHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743 300 LTMKERHCVPD-NITFATMIQAYNALGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 300 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 341 (351)
++. +..|+ ...+..+...|...|++++|...++++++..
T Consensus 327 ~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 327 EKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 762 22222 3466788899999999999999999987654
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=1.6e-13 Score=101.74 Aligned_cols=171 Identities=13% Similarity=0.061 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 018743 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251 (351)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (351)
..+..+...+...|++++|...++.+..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3455566667777777777777776655432 256667777777778888888888888777663 44667777788888
Q ss_pred HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 018743 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331 (351)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 331 (351)
...|++++|...++++.+..+. +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887776544 67778888888888889999988888888763 445678888888889999999999
Q ss_pred HHHHHHHHhcccCCC
Q 018743 332 NLENKMIAMKENSGK 346 (351)
Q Consensus 332 ~~~~~~~~~~~~~~~ 346 (351)
..++++++..|..+.
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999998888776554
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.61 E-value=6.5e-13 Score=110.46 Aligned_cols=296 Identities=11% Similarity=-0.001 Sum_probs=204.4
Q ss_pred ccCCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHH--HhccCChHHHH---------HHHHHhhccCCCCcc-H-H-
Q 018743 5 GKCKQPEQASLLFEVMLSD--GL--KPSVDVYTALVSA--YGQSGLLDEAF---------STINDMKSVSDCKPD-V-Y- 66 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~~~~~~~~~~~~-~-~- 66 (351)
.+.+++++|..+++++.+. .. .++...|-.++.. ..-.+.++.+. +.++.+.... .+.+ . .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~~~~~l~~ 101 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ-KKLTGLLKY 101 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG-HHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC-CCCccHHHH
Confidence 5688999999999988664 22 2233344444432 11112222222 5566554311 0111 1 1
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---CCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC-----C
Q 018743 67 -TYSILIKSCTKFHRFDLIEKILAEMSYLGI--E---CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP-----D 135 (351)
Q Consensus 67 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~ 135 (351)
.+......+...|++++|...+++..+... + ....++..+..+|...|+++.|...+++..+...-.+ .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 123334456789999999999999875421 1 1355788899999999999999999998875421111 2
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCC
Q 018743 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLM----GVK-ADIQTLNILTKSYGRAGMYDKMRSVMDFMQK-----RFFFPT 205 (351)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~ 205 (351)
..+++.+...|...|++++|.+.+++..+. +.+ ....++..+..+|...|++++|...+++... .... .
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-L 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-H
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-H
Confidence 446788899999999999999999987653 111 1234678889999999999999999998876 3332 3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCccHHHHHHHHHHHHhcCC---HhHHHHHHHHhhhcCCccCHHh
Q 018743 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRG----MKPNSITYCSLVSAYSKAGL---IMKVDSILRQVENSDVILDTPF 278 (351)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~ 278 (351)
..++..+...+.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|...++..... ......
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~--~~~~~~ 338 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLH--AYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH--HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh--hHHHHH
Confidence 6778889999999999999999999988642 12233456666677777788 77777777763221 122346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 279 FNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 279 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
+..+...|...|++++|.+.|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67889999999999999999998864
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.58 E-value=8.1e-13 Score=101.69 Aligned_cols=204 Identities=12% Similarity=0.063 Sum_probs=157.2
Q ss_pred CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 018743 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212 (351)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (351)
+.|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+..+. +...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 34567888888999999999999999999988763377777777999999999999999999998886443 67788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccH-------HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-CHHhHHHHHH
Q 018743 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNS-------ITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIIS 284 (351)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 284 (351)
...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...++++.+..+.. +...+..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999998864 4445 457788888889999999999999998764320 2456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 285 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
++...| ..+++++...+ ..+...|.... ....+.+++|...+++.++..|....
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 776544 44456665543 22444444433 34567789999999999999887643
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.58 E-value=3.2e-13 Score=120.15 Aligned_cols=165 Identities=7% Similarity=0.024 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Q 018743 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAY 251 (351)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (351)
..++.+...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|+..|++.++.. +-+...|..+..++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444444444444444444444444443222 34444444444445555555555555444432 22344444555555
Q ss_pred HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 018743 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ 331 (351)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 331 (351)
...|++++|++.|++..+.++. +...++.+..++...|++++|++.|+++.+.. +-+...+..+..++...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555554444433 44445555555555555555555555554431 112344445555555555555555
Q ss_pred HHHHHHHHh
Q 018743 332 NLENKMIAM 340 (351)
Q Consensus 332 ~~~~~~~~~ 340 (351)
+.++++++.
T Consensus 166 ~~~~kal~l 174 (723)
T 4gyw_A 166 ERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555554443
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=3e-12 Score=106.24 Aligned_cols=267 Identities=10% Similarity=0.029 Sum_probs=193.1
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccH----HHHHHHHHHH
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVD----VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV----YTYSILIKSC 75 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~ 75 (351)
+...|++++|...+++........+.. +++.+...+...|++++|.+.+++......-.++. .++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 456899999999999988765433332 56777788899999999999999876532111222 3356677788
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCC--C-CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC---CCCHhHHHHHHHH
Q 018743 76 TKFHRFDLIEKILAEMSYL----GIE--C-SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGC---HPDIFTLNSMISA 145 (351)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~ 145 (351)
...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++..+...- +....++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 8999999999999987653 221 2 3456677888999999999999999998765311 1123467778888
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHhHHHHHHHH
Q 018743 146 YGNSGNIEKMEKWYNEFNLMGVKAD--IQTLN----ILTKSYGRAGMYDKMRSVMDFMQKRFFFP---TVVTYNIVIETF 216 (351)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 216 (351)
+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ....+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 9999999999999998865321111 11111 23345778999999999999876543221 133466778889
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCCccH-HHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 018743 217 GKAGHIEKMEEYFKKMKHR----GMKPNS-ITYCSLVSAYSKAGLIMKVDSILRQVENS 270 (351)
Q Consensus 217 ~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 270 (351)
...|++++|...+++.... +.+++. ..+..+..++...|+.++|...+++....
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999987643 222222 36677788889999999999999987653
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=1.5e-12 Score=96.42 Aligned_cols=165 Identities=11% Similarity=0.011 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 108 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (351)
...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3456666677777777777777777776532 3456666677777777777777777777776654 445666667777
Q ss_pred HHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018743 109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD 188 (351)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (351)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 7777777777777777776652 4455566666666777777777777776666543 344556666666666666666
Q ss_pred HHHHHHHHHHH
Q 018743 189 KMRSVMDFMQK 199 (351)
Q Consensus 189 ~a~~~~~~~~~ 199 (351)
+|...++...+
T Consensus 162 ~A~~~~~~~~~ 172 (186)
T 3as5_A 162 EALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.56 E-value=7.1e-13 Score=117.92 Aligned_cols=163 Identities=11% Similarity=0.010 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 018743 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216 (351)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (351)
.+++.+...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++++|...|++..+.... +...|..+..++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444444444444444444444444432 223344444444444445555555554444443222 344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 018743 217 GKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296 (351)
Q Consensus 217 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 296 (351)
...|++++|++.|++..+.. +-+...+..+...+...|++++|+..|++..+..+. +...+..+..++...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555555555442 233445555555555555555555555555554443 4455555555555555555555
Q ss_pred HHHHHHH
Q 018743 297 ELFLTMK 303 (351)
Q Consensus 297 ~~~~~~~ 303 (351)
+.++++.
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=5.4e-12 Score=97.06 Aligned_cols=193 Identities=12% Similarity=0.040 Sum_probs=88.3
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018743 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS 180 (351)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (351)
..+......+...|++++|...|++..+.. .+++...+..+..++...|++++|++.+++..+.. +.+...+..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 344444444444444444444444444432 01333333334444444444444444444444322 2233344444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHH
Q 018743 181 YGRAGMYDKMRSVMDFMQKRFFFPTV-------VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKP--NSITYCSLVSAY 251 (351)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 251 (351)
+...|++++|...+++..+..+. +. ..|..+...+...|++++|+..+++..+.. +. +...+..+...+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHH
Confidence 44444444444444444443221 22 234455555566666666666666666542 22 234555555555
Q ss_pred HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
...| ..+++.+...+.. +...+.... ....+.+++|+..|++..+.
T Consensus 164 ~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 4332 2334444443322 233333322 23345567777777777764
No 83
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.53 E-value=1.5e-10 Score=101.97 Aligned_cols=209 Identities=11% Similarity=0.052 Sum_probs=128.3
Q ss_pred CHhHHHHHHHHHhcCCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CC
Q 018743 135 DIFTLNSMISAYGNSGNIEKME-KWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF---------FP 204 (351)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~ 204 (351)
+...|...+..+...|+.++|. ++|++.... .+.+...+...+....+.|+++.|..+|+.+..... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 3344444555555566666675 777776653 344555566667777777777777777777655310 12
Q ss_pred ------------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc-CCHhHHHHHHHHhhhcC
Q 018743 205 ------------TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA-GLIMKVDSILRQVENSD 271 (351)
Q Consensus 205 ------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~ 271 (351)
....|...+....+.|+.+.|..+|.+..+.........|...+..-.+. ++.+.|.++|+...+.-
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 12346666666666777777777777777651112233333333322333 34777778877777653
Q ss_pred CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP--DNITFATMIQAYNALGMTEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 345 (351)
+. +...+...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+.++.+++.+..|+.+
T Consensus 501 p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 501 AT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 33 55666677777777788888888888777653211 234666666666677888888888888877776643
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.53 E-value=4.5e-13 Score=106.46 Aligned_cols=230 Identities=15% Similarity=0.056 Sum_probs=160.5
Q ss_pred ccCCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccC-----CC-CccHHHHHHH
Q 018743 5 GKCKQPEQASLLFEVMLSD-------GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-----DC-KPDVYTYSIL 71 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~l 71 (351)
...|++++|+..|++..+. +.+....++..+...+...|++++|+..+++..+.. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776552 223357789999999999999999999999988641 22 2345678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc------CCCCCCHhH
Q 018743 72 IKSCTKFHRFDLIEKILAEMSYL------G-IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES------GGCHPDIFT 138 (351)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 138 (351)
...+...|++++|...+++.... . .+....++..+...+...|++++|...+++..+. ...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 1 1334678888999999999999999999998765 112234567
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCC
Q 018743 139 LNSMISAYGNSGNIEKMEKWYNEFNLM-------GVKAD-IQTLNILTKSYGRAGMYD------KMRSVMDFMQKRFFFP 204 (351)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~ 204 (351)
+..+...+...|++++|..++++.... ...+. ...+..+.......+... .+...++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 888999999999999999999988753 11222 223333333333333222 222222221111 122
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR 235 (351)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (351)
...++..+...+...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567888999999999999999999988753
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.53 E-value=5.9e-13 Score=105.77 Aligned_cols=229 Identities=16% Similarity=0.133 Sum_probs=159.2
Q ss_pred hhcCChHHHHHHHHHHHhcC------CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc------CC-CCCHHHHHHH
Q 018743 111 GKAKKFEEMESSFSAMVESG------GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM------GV-KADIQTLNIL 177 (351)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 177 (351)
...|++++|...+++..+.. ..+....++..+...+...|++++|...+++.... +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45677777777777765521 12334567888999999999999999999998754 21 2345678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCc-cHHH
Q 018743 178 TKSYGRAGMYDKMRSVMDFMQKRF-------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR------GMKP-NSIT 243 (351)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 243 (351)
...+...|++++|...+++..... .+.....+..+...+...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999876641 1224567888899999999999999999998765 1122 4567
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhc-------CCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH----hcC--CCC
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENS-------DVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMK----ERH--CVP 309 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~--~~p 309 (351)
+..+...+...|++++|...++++.+. ...+ ....+..+.......+....+.. +..+. ..+ .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 888999999999999999999988753 1111 22334344434433333333222 22221 111 122
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743 310 DNITFATMIQAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
...++..+...|...|++++|..+++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999998864
No 86
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=3.5e-10 Score=99.68 Aligned_cols=333 Identities=10% Similarity=0.009 Sum_probs=207.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---hHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCH-
Q 018743 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL---LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRF- 81 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 81 (351)
+.++++.+..+|+.+...-+ .+...|...+..-.+.|+ ++.+.++|++.......+|++..|...+....+.++.
T Consensus 78 ~~~~~~~aR~vyEraL~~fP-~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~ 156 (679)
T 4e6h_A 78 SLKQWKQVYETFDKLHDRFP-LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDII 156 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCST
T ss_pred hcCcHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccc
Confidence 45677778888888777633 367777777777777777 7888888888776322237777777666655444432
Q ss_pred -------HHHHHHHHHHHH-cCC-CC-CHhHHHHHHHHHh---------hcCChHHHHHHHHHHHhcCCCCCCHhHH---
Q 018743 82 -------DLIEKILAEMSY-LGI-EC-SAVTYNTIIDGYG---------KAKKFEEMESSFSAMVESGGCHPDIFTL--- 139 (351)
Q Consensus 82 -------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 139 (351)
+.+.++|+.... .|. .+ +...|...+.... ..++++.+..+|+.++... ...-..+|
T Consensus 157 ~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP-~~~~~~~w~~Y 235 (679)
T 4e6h_A 157 TGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP-MDCLESMWQRY 235 (679)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC-CSSHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc-cHHHHHHHHHH
Confidence 334456665443 244 33 3456666655432 1234555666666665321 00001111
Q ss_pred ----------------------------------------------------------------------HHHHHHHhcC
Q 018743 140 ----------------------------------------------------------------------NSMISAYGNS 149 (351)
Q Consensus 140 ----------------------------------------------------------------------~~l~~~~~~~ 149 (351)
...+..--..
T Consensus 236 ~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~ 315 (679)
T 4e6h_A 236 TQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDN 315 (679)
T ss_dssp HHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhC
Confidence 1111111110
Q ss_pred C-------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 018743 150 G-------NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMR-SVMDFMQKRFFFPTVVTYNIVIETFGKAGH 221 (351)
Q Consensus 150 ~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (351)
+ ..+.+..+|+++... .+.....|...+..+...|+.++|. .+|++.... .+.+...|-..+......|+
T Consensus 316 ~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~ 393 (679)
T 4e6h_A 316 KLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTK 393 (679)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred CccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCC
Confidence 0 011223334444332 2334455555666666778888886 999988765 33466677778888889999
Q ss_pred HHHHHHHHHHHHHcCC---------Cc------------cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHH
Q 018743 222 IEKMEEYFKKMKHRGM---------KP------------NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280 (351)
Q Consensus 222 ~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 280 (351)
+++|.++|+++..... .| ....|...+....+.|+.+.|..+|.++.+.........|.
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence 9999999999876410 13 23467788888888899999999999988762222344554
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 281 CIISAYGQA-GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 281 ~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
..+..-.+. ++.+.|.++|+...+. ++-+...|...+......|+.+.|+.+|++++...+.
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 444433444 4589999999999886 4556677778888888899999999999999887663
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.49 E-value=5.9e-11 Score=93.30 Aligned_cols=243 Identities=9% Similarity=0.029 Sum_probs=124.3
Q ss_pred HHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC
Q 018743 36 VSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK 115 (351)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (351)
++-..-.|++..++.-...+.. ..++ ..-..+.+++...|++... ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 3344456777777664333321 1222 2233344556666655431 11233333333333332 211
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018743 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV-KADIQTLNILTKSYGRAGMYDKMRSVM 194 (351)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (351)
|+..|++....+ +++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.+
T Consensus 85 ---a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ---NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ---CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 556666655442 34444445566666666777777777766654432 134555666666666677777777777
Q ss_pred HHHHHcCCCC-----CHHhHHHHHHHHH--hcC--CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHH
Q 018743 195 DFMQKRFFFP-----TVVTYNIVIETFG--KAG--HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265 (351)
Q Consensus 195 ~~~~~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 265 (351)
+.|.+. .| +..+...++.++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|...++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 666554 33 2344444444422 223 666666667666544 3432233333336666667777766666
Q ss_pred Hhhhc----------CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 266 QVENS----------DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 266 ~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
.+.+. ++. ++.++..+|......|+ +|.+++.++.+.
T Consensus 236 ~l~~~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHSHHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHhcccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 55442 122 44455445544555555 666666666654
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.45 E-value=2.1e-11 Score=85.08 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=100.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHH
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYG 287 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 287 (351)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+..+. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 35566677777788888888888777654 445667777777777888888888888887766544 5667777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 288 QAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 288 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++++...|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888887653 335667778888888888888888888888877654
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.44 E-value=1.2e-10 Score=91.61 Aligned_cols=183 Identities=9% Similarity=-0.011 Sum_probs=105.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF-FPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233 (351)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (351)
++..+++....+ +++..++..+..++...|++++|++++......+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666655544 34444555666667777777777777766655443 1245566666677777777777777777776
Q ss_pred HcCCCc-----cHHHHHHHHHHHH--hcC--CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 234 HRGMKP-----NSITYCSLVSAYS--KAG--LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 234 ~~~~~~-----~~~~~~~l~~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
+. .| +..+...++.++. ..| ++.+|..+|+++.+.. |+...-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 44 2445555554422 223 6777777777765543 2322222333366667777777777765543
Q ss_pred cC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccC
Q 018743 305 RH---------CVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 305 ~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
.- -+-|+.++..++......|+ +|.++++++.+..|..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 20 02345555555555555665 6667777776666554
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.42 E-value=5.1e-11 Score=93.58 Aligned_cols=192 Identities=12% Similarity=0.078 Sum_probs=115.8
Q ss_pred CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHH
Q 018743 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD---IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-P-TVV 207 (351)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~ 207 (351)
+.+...+..+...+.+.|++++|+..|+.+.... +.+ ...+..+..++.+.|++++|...|+...+..+. | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3455566667777778888888888888877653 223 556677777788888888888888887765321 1 234
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhH
Q 018743 208 TYNIVIETFGK--------AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFF 279 (351)
Q Consensus 208 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 279 (351)
.+..+..++.. .|++++|...|+++.+.. +.+......+. .+..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 55566666766 777888888887777653 22222221110 00000000 01113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcccC
Q 018743 280 NCIISAYGQAGDVEKMGELFLTMKERHCVP--DNITFATMIQAYNAL----------GMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 280 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~ 344 (351)
..+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...++++++..|..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 455666777777777777777776542111 234556666666655 67777777777777766654
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.39 E-value=3.1e-11 Score=96.46 Aligned_cols=211 Identities=10% Similarity=0.005 Sum_probs=137.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHH
Q 018743 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM----GVKAD-IQTLNILTKSYGRAGMYDK 189 (351)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~ 189 (351)
++++|...|++. ...|...|++++|...|.+.... |-+++ ..+++.+..+|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 477777777665 23456677888888777766542 21111 4567777788888888888
Q ss_pred HHHHHHHHHHcCC---CC--CHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCC---Cc--cHHHHHHHHHHHHhcCCHh
Q 018743 190 MRSVMDFMQKRFF---FP--TVVTYNIVIETFGKA-GHIEKMEEYFKKMKHRGM---KP--NSITYCSLVSAYSKAGLIM 258 (351)
Q Consensus 190 a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~ 258 (351)
|...+++...... .+ ...+++.+...|... |++++|+..|++..+... .+ ...++..+...+...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 8887777654311 01 134677777888885 888888888888765411 01 1346777888888888888
Q ss_pred HHHHHHHHhhhcCCccCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHH--Hc
Q 018743 259 KVDSILRQVENSDVILDT------PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDN------ITFATMIQAYN--AL 324 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~ 324 (351)
+|...+++..+..+.... ..+..+..++...|++++|...|++..+. .|+. ..+..++.++. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 888888888776544222 14666777888888888888888887753 2221 13344555554 34
Q ss_pred CCHHHHHHHHHHHHHhccc
Q 018743 325 GMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 325 g~~~~A~~~~~~~~~~~~~ 343 (351)
+++++|+..|++++..+|.
T Consensus 254 ~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp TTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHhccCCccHHH
Confidence 6688888888776655543
No 92
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.39 E-value=4.8e-09 Score=83.29 Aligned_cols=219 Identities=7% Similarity=-0.057 Sum_probs=142.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcC--ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHH----hcC---C
Q 018743 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK--KFEEMESSFSAMVESGGCHPDIFTLNSMISAY----GNS---G 150 (351)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 150 (351)
..++|+.+++.+...+ |-+..+|+.-..++...+ ++++++..++.++... +.+..+|+.-...+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccC
Confidence 3456666666666654 335555666555565666 6777777777776653 34444455433333 333 5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC------H
Q 018743 151 NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD--KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH------I 222 (351)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 222 (351)
++++++++++.+.+.. +.+...++.-...+.+.|.++ ++++.++.+.+..+. +...|+.-...+...++ +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 6677777777776654 456666666666666666666 777777777766554 66666666555555555 7
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH-HHHHHHHhhhcC--CccCHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK-VDSILRQVENSD--VILDTPFFNCIISAYGQAGDVEKMGELF 299 (351)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 299 (351)
+++++.+++++... +-|...|+.+...+.+.|+... +..+..++.+.+ -..++..+..++..+.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 78888888888775 5577778877777777777444 555666655443 1226677888888888888888888888
Q ss_pred HHHHh
Q 018743 300 LTMKE 304 (351)
Q Consensus 300 ~~~~~ 304 (351)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88876
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.38 E-value=3.7e-11 Score=90.83 Aligned_cols=169 Identities=12% Similarity=-0.000 Sum_probs=91.3
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNI----------------LTKSYGRAGMYDKMRSVMDFMQKR 200 (351)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 200 (351)
..+......+...|++++|+..|++..... +.+...+.. +..++.+.|++++|...|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344445566778888888888888887653 223444544 556666666666666666666555
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH--hHHHHHHHHhhhcCCccCHHh
Q 018743 201 FFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI--MKVDSILRQVENSDVILDTPF 278 (351)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~ 278 (351)
.+. +...+..+..++...|++++|...|++..+.. |.+...+..+...+...|+. ..+...++.+.. +.|....
T Consensus 84 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 332 45556666666666666666666666666553 33455555555555444322 223333333321 1112222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 018743 279 FNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312 (351)
Q Consensus 279 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 312 (351)
+.....++...|++++|+..|++.++. .|+..
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 333344455556666666666666553 44443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=8e-11 Score=92.46 Aligned_cols=188 Identities=11% Similarity=0.025 Sum_probs=135.9
Q ss_pred CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC---HhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--CCCH
Q 018743 97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV--KADI 171 (351)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~ 171 (351)
+.+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..++.+.|++++|+..|++..+... +...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 4567788888999999999999999999998874 334 56788899999999999999999999988532 1224
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH
Q 018743 172 QTLNILTKSYGR--------AGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT 243 (351)
Q Consensus 172 ~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (351)
..+..+..++.. .|++++|...|+++....+. +......+ ..+..+... ....
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~----~~~~ 150 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH----HHHH
Confidence 567778888888 99999999999999886432 22222111 111111110 1122
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc--CHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVIL--DTPFFNCIISAYGQA----------GDVEKMGELFLTMKER 305 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 305 (351)
+..+...+...|++++|...|+.+.+..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5567777888888888888888887654432 234566777777765 8888899998888875
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.37 E-value=2.3e-09 Score=85.16 Aligned_cols=225 Identities=8% Similarity=-0.026 Sum_probs=181.0
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc--
Q 018743 113 AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG--NIEKMEKWYNEFNLMGVKADIQTLNILTKSY----GRA-- 184 (351)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 184 (351)
....++|+.+++.++... +-+..+|+.--.++...| ++++++++++.+.... +-+..+++.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 344578999999999874 556677888888888888 9999999999998865 44555565554444 445
Q ss_pred -CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC-----
Q 018743 185 -GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE--KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL----- 256 (351)
Q Consensus 185 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 256 (351)
+++++++..++.+.+..++ +...|+.-...+...|.++ ++++.++++.+.+ +-|...|+.-...+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 7899999999999987655 8888888888888888888 9999999999986 5577888877777777776
Q ss_pred -HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743 257 -IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK-MGELFLTMKERH--CVPDNITFATMIQAYNALGMTEAAQN 332 (351)
Q Consensus 257 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 332 (351)
++++++.++.+....+. |...|+.+...+.+.|+... +..+..++.+.+ -+.++..+..++.+|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 88999999999998887 99999999999988888544 556777666543 13467888999999999999999999
Q ss_pred HHHHHHH-hccc
Q 018743 333 LENKMIA-MKEN 343 (351)
Q Consensus 333 ~~~~~~~-~~~~ 343 (351)
+++.+.+ .+|.
T Consensus 280 ~~~~l~~~~Dpi 291 (306)
T 3dra_A 280 VYDLLKSKYNPI 291 (306)
T ss_dssp HHHHHHHTTCGG
T ss_pred HHHHHHhccChH
Confidence 9999986 4554
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.36 E-value=1.7e-10 Score=87.14 Aligned_cols=166 Identities=11% Similarity=-0.018 Sum_probs=106.1
Q ss_pred HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHH----------------HHHHHhcCCCHHHHHHHHHHHH
Q 018743 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNS----------------MISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
...+......+...|++++|+..|++..+.. +.+...|.. +..++.+.|++++|+..|++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344445556677788888888888777652 334455666 7777777888888888887777
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCccH
Q 018743 164 LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH--IEKMEEYFKKMKHRGMKPNS 241 (351)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 241 (351)
+.. +.+...+..+..++...|++++|...|++..+..+. +...+..+..++...|+ .+.+...+..... ..|..
T Consensus 82 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 82 QKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 654 456677777777788888888888888877776443 56667777666655443 3344445544432 12333
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSD 271 (351)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 271 (351)
..+.....++...|++++|...|++..+..
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 334445555666777888888888777654
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.35 E-value=5.3e-10 Score=85.63 Aligned_cols=191 Identities=12% Similarity=-0.004 Sum_probs=120.4
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HhHHH
Q 018743 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-A-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV--VTYNI 211 (351)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 211 (351)
...+..+...+.+.|++++|+..|+++...... + ....+..+..++.+.|++++|...|+.+.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345566677788888888888888888764311 1 1356777788888888888888888888776433111 23334
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743 212 VIETFGK------------------AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273 (351)
Q Consensus 212 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 273 (351)
+..++.. .|++++|...|+++++.. |-+.......... ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH------
Confidence 4444443 344555555555555431 1111111110000 0000000
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCCC
Q 018743 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD----NITFATMIQAYNALGMTEAAQNLENKMIAMKENSGKK 347 (351)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 347 (351)
......+...+.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+....|...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 001134567888999999999999999976 333 2468888999999999999999999999888776554
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.35 E-value=2.5e-10 Score=79.49 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=35.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh
Q 018743 33 TALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK 112 (351)
Q Consensus 33 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 112 (351)
..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++++...+ +.+...+..+...+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 333444444444444444444443311 1223333333333444444444444444443332 2233333333344444
Q ss_pred cCChHHHHHHHHHHH
Q 018743 113 AKKFEEMESSFSAMV 127 (351)
Q Consensus 113 ~~~~~~a~~~~~~~~ 127 (351)
.|++++|.+.++++.
T Consensus 82 ~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 82 QGDYDEAIEYYQKAL 96 (136)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444433
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.35 E-value=6.9e-11 Score=105.59 Aligned_cols=173 Identities=8% Similarity=-0.103 Sum_probs=137.8
Q ss_pred hcCCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 018743 147 GNSGNIEKMEKWYNEFN--------LMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGK 218 (351)
Q Consensus 147 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (351)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|...+++..+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 77889999999999887 332 456677888888899999999999999988876443 67788888888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL 298 (351)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 298 (351)
.|++++|...|++..+.. +-+...+..+..++...|++++ ...|+++.+.++. +...+..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988874 4467788888889999999999 9999998887766 778888899999999999999999
Q ss_pred HHHHHhcCCCCC-HHHHHHHHHHHHHcCC
Q 018743 299 FLTMKERHCVPD-NITFATMIQAYNALGM 326 (351)
Q Consensus 299 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 326 (351)
|+++.+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988764 444 5567777777766554
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.35 E-value=2.9e-11 Score=107.95 Aligned_cols=152 Identities=7% Similarity=0.004 Sum_probs=76.8
Q ss_pred cCChHHHHHHHHHhh--------ccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhc
Q 018743 42 SGLLDEAFSTINDMK--------SVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113 (351)
Q Consensus 42 ~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (351)
.|++++|++.+++.. +.. +.+...+..+...+...|++++|...++++.+.. +.+...|..+..++...
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 345555555555554 211 2233445555555555555555555555555443 33445555555555555
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018743 114 KKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSV 193 (351)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 193 (351)
|++++|...|++..+.. +.+...+..+..++.+.|++++ ++.|++..+.+ +.+...+..+..++.+.|++++|...
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555442 3334445555555555555555 55555555433 33444555555555555555555555
Q ss_pred HHHHHHc
Q 018743 194 MDFMQKR 200 (351)
Q Consensus 194 ~~~~~~~ 200 (351)
|++..+.
T Consensus 557 ~~~al~l 563 (681)
T 2pzi_A 557 LDEVPPT 563 (681)
T ss_dssp HHTSCTT
T ss_pred HHhhccc
Confidence 5554443
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.34 E-value=2.5e-08 Score=85.36 Aligned_cols=311 Identities=12% Similarity=0.004 Sum_probs=188.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHhhccCCC-CccHHHHHHHHHHHH----hcCCH
Q 018743 8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL-LDEAFSTINDMKSVSDC-KPDVYTYSILIKSCT----KFHRF 81 (351)
Q Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~ 81 (351)
|+++.+..+|++.... .|+...|...+....+.+. .+....+|+.....-|. .++...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788999999998875 5699999998887777663 45566778877764443 346677877776644 24567
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHH------------------------------------------------HHHHhhc
Q 018743 82 DLIEKILAEMSYLGIECSAVTYNTI------------------------------------------------IDGYGKA 113 (351)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------------------~~~~~~~ 113 (351)
+.+..+|++........-...|... +..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 8888888888763211111122111 1110000
Q ss_pred --CC-----hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018743 114 --KK-----FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM 186 (351)
Q Consensus 114 --~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (351)
+- .+.+..+|++++.. .+.+...|...+..+.+.|+.+.|..++++.... +.+...+.. |....+
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e 257 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMD 257 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTT
T ss_pred CccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcc
Confidence 00 12344556665554 2444556666666666777777777777777665 333322221 111111
Q ss_pred HHHHHHHHHHHHHcC------------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc
Q 018743 187 YDKMRSVMDFMQKRF------------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA 254 (351)
Q Consensus 187 ~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (351)
.++. ++.+.+.- .......|...+....+.+..+.|..+|++. ... +.+...|...+..-...
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH
Confidence 1111 22221110 0011234555566666677899999999988 321 23444554333322223
Q ss_pred -CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 018743 255 -GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNL 333 (351)
Q Consensus 255 -g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 333 (351)
++.+.|..+|+...+..+. ++..+...+......|+.+.|..+|+++. .....|...+.--...|+.+.+..+
T Consensus 333 ~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3689999999998875433 45566777888888899999999999873 2466778887777778999999998
Q ss_pred HHHHHH
Q 018743 334 ENKMIA 339 (351)
Q Consensus 334 ~~~~~~ 339 (351)
++++.+
T Consensus 407 ~~~~~~ 412 (493)
T 2uy1_A 407 VDQKMD 412 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
No 102
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.34 E-value=1.8e-10 Score=92.02 Aligned_cols=210 Identities=10% Similarity=0.068 Sum_probs=143.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCCCC-HhHHHHHHHHHhcCCCHHHH
Q 018743 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG---GCHPD-IFTLNSMISAYGNSGNIEKM 155 (351)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a 155 (351)
++++|...+++. ...|...|++++|...|++..+.. +.+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 335667788888888888775531 11111 45677888888888888888
Q ss_pred HHHHHHHHhcCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHhHHHHHHHHHhcCCHHH
Q 018743 156 EKWYNEFNLMGV---KA--DIQTLNILTKSYGRA-GMYDKMRSVMDFMQKRFFFP-T----VVTYNIVIETFGKAGHIEK 224 (351)
Q Consensus 156 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 224 (351)
+..+++...... .+ ...++..+...|... |++++|...|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888887754211 11 134677888888886 99999999998876542110 1 3567888899999999999
Q ss_pred HHHHHHHHHHcCCCccH------HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccC----HHhHHHHHHHHH--hcCCH
Q 018743 225 MEEYFKKMKHRGMKPNS------ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD----TPFFNCIISAYG--QAGDV 292 (351)
Q Consensus 225 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~--~~g~~ 292 (351)
|+..|++..+....... ..+..+..++...|++++|...+++..+..+... ...+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998876422211 2567788888899999999999999876543211 113444555554 34668
Q ss_pred HHHHHHHHHHHh
Q 018743 293 EKMGELFLTMKE 304 (351)
Q Consensus 293 ~~a~~~~~~~~~ 304 (351)
++|+..|+.+..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 888888776654
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.32 E-value=1.1e-10 Score=102.31 Aligned_cols=154 Identities=5% Similarity=-0.147 Sum_probs=116.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743 149 SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228 (351)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 228 (351)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887654 456788888999999999999999999998886443 678888899999999999999999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 018743 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA---GDVEKMGELFLTMKER 305 (351)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 305 (351)
+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 556788899999999999999999999998887665 678888899999999 9999999999998876
Q ss_pred C
Q 018743 306 H 306 (351)
Q Consensus 306 ~ 306 (351)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=2.5e-11 Score=86.51 Aligned_cols=141 Identities=7% Similarity=0.008 Sum_probs=64.4
Q ss_pred HHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743 38 AYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116 (351)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (351)
.+...|++++|+..+...... .|+ ...+..+...|.+.|++++|...|++..+.. |-+..+|..+..+|...|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 334444555555555544431 121 2233344445555555555555555555443 33445555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018743 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW-YNEFNLMGVKADIQTLNILTKSYGRAG 185 (351)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (351)
++|...|++.++.. +.+..++..+...+.+.|+++++.+. +++..+.. |.+..+|......+...|
T Consensus 82 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 55555555554442 33344455555555555554443332 34444332 233444444444444433
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.31 E-value=2.4e-10 Score=90.95 Aligned_cols=168 Identities=12% Similarity=-0.001 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH-HH
Q 018743 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY-CS 246 (351)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 246 (351)
+.+...+..+...+...|++++|...|++.....+. +...+..+...+...|++++|...++++... .|+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 445556667777778888888888888887776443 5667777788888888888888888877665 3343322 22
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcC
Q 018743 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCV-PDNITFATMIQAYNALG 325 (351)
Q Consensus 247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g 325 (351)
....+...++.+.|...+++.....+. +...+..+...+...|++++|+..|.++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 333355667777788888888777665 7778888888888888888888888888875322 12557788888888888
Q ss_pred CHHHHHHHHHHHHH
Q 018743 326 MTEAAQNLENKMIA 339 (351)
Q Consensus 326 ~~~~A~~~~~~~~~ 339 (351)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888877664
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.29 E-value=1.2e-10 Score=85.53 Aligned_cols=160 Identities=11% Similarity=0.023 Sum_probs=84.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHhc
Q 018743 176 ILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKA 254 (351)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 254 (351)
.....+...|++++|...++...+..+. +...+..+...+...|++++|...+++..... |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 3444455555555555555554443222 34445555555555555555555555554432 232222211111 1111
Q ss_pred CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 018743 255 GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQAYNALGMTEAAQNL 333 (351)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 333 (351)
+....|...+++..+..+. +...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2223356666666655544 56666666667777777777777777766543221 234566666677777777777777
Q ss_pred HHHHHH
Q 018743 334 ENKMIA 339 (351)
Q Consensus 334 ~~~~~~ 339 (351)
|++.+.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.29 E-value=5.1e-11 Score=84.93 Aligned_cols=144 Identities=6% Similarity=-0.072 Sum_probs=84.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743 179 KSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258 (351)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 258 (351)
..+...|++++|+..+........ .+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 344455666666666665544311 123344556666667777777777777766653 445666667777777777777
Q ss_pred HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 018743 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGEL-FLTMKERHCVPDNITFATMIQAYNALGM 326 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 326 (351)
+|...|++..+.++. +...+..+...+.+.|++++|.+. ++++.+.. +-++..|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 777777776666554 566666677777777776655544 35665541 2244555555555555553
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.28 E-value=1.8e-10 Score=101.07 Aligned_cols=154 Identities=7% Similarity=-0.048 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 018743 7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEK 86 (351)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 86 (351)
.|++++|...|++..+..+. +...+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47899999999999887554 78899999999999999999999999998743 4567889999999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC---CCHHHHHHHHHHHH
Q 018743 87 ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS---GNIEKMEKWYNEFN 163 (351)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 163 (351)
.+++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999998876 5578899999999999999999999999998874 55677888899999999 99999999999988
Q ss_pred hcC
Q 018743 164 LMG 166 (351)
Q Consensus 164 ~~~ 166 (351)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 765
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.28 E-value=2.1e-09 Score=81.38 Aligned_cols=140 Identities=9% Similarity=0.026 Sum_probs=71.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC----CHHHHHHHH
Q 018743 13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH----RFDLIEKIL 88 (351)
Q Consensus 13 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 88 (351)
|.+.|++..+.| ++.++..+...+...+++++|++.|++..+ . -+...+..+...+.. + ++++|..+|
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAA-Q---GDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 445555555432 455555555555556666666666666554 1 234444445544444 4 555666666
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHhh----cCChHHHHHHHHHHHhcCCCC-CCHhHHHHHHHHHhc----CCCHHHHHHHH
Q 018743 89 AEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVESGGCH-PDIFTLNSMISAYGN----SGNIEKMEKWY 159 (351)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~ 159 (351)
++..+.| +...+..|...|.. .+++++|+.+|++..+.+ .. .+..++..+...|.. .+++++|..+|
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 5555443 44445555555544 455555555555554432 00 013444445555544 44555555555
Q ss_pred HHHHh
Q 018743 160 NEFNL 164 (351)
Q Consensus 160 ~~~~~ 164 (351)
++..+
T Consensus 153 ~~A~~ 157 (212)
T 3rjv_A 153 KGSSS 157 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.27 E-value=8.2e-10 Score=87.87 Aligned_cols=168 Identities=5% Similarity=-0.071 Sum_probs=125.8
Q ss_pred CCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH-HH
Q 018743 133 HPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTY-NI 211 (351)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 211 (351)
+.+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++.+.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4455567777778888888888888888887754 4566778888888888888888888888876653 333322 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-CHHhHHHHHHHHHhcC
Q 018743 212 VIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAG 290 (351)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 290 (351)
....+...++.+.|...+++..... +.+...+..+...+...|++++|...++++.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2333556677777888888888774 5577888888888888899999999988888775542 2667888888888889
Q ss_pred CHHHHHHHHHHHHh
Q 018743 291 DVEKMGELFLTMKE 304 (351)
Q Consensus 291 ~~~~a~~~~~~~~~ 304 (351)
+.++|...|++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888877653
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.27 E-value=3.4e-09 Score=80.25 Aligned_cols=176 Identities=10% Similarity=-0.030 Sum_probs=116.2
Q ss_pred HHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcC----ChHHHHHH
Q 018743 47 EAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK----KFEEMESS 122 (351)
Q Consensus 47 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 122 (351)
+|++.|++..+ .-+...+..+...+...+++++|..+|++..+.| ++..+..|...|.. + ++++|.++
T Consensus 4 eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 46666777665 2356667777777777788888888888877765 55666677777776 5 77888888
Q ss_pred HHHHHhcCCCCCCHhHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHH
Q 018743 123 FSAMVESGGCHPDIFTLNSMISAYGN----SGNIEKMEKWYNEFNLMGVK-ADIQTLNILTKSYGR----AGMYDKMRSV 193 (351)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~ 193 (351)
|++..+. .+..++..+...|.. .+++++|+++|++..+.+.. .+...+..|...|.. .+++++|...
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8877654 255566677777766 67778888888777765421 125566667677766 6677777777
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 018743 194 MDFMQKRFFFPTVVTYNIVIETFGKA-G-----HIEKMEEYFKKMKHRG 236 (351)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 236 (351)
|++..+.+ .+...+..+...|... | ++++|..+|++..+.|
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77766651 2333445555555432 2 6777777777776665
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.26 E-value=1.5e-10 Score=84.98 Aligned_cols=159 Identities=6% Similarity=0.020 Sum_probs=84.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHhcC
Q 018743 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIET-FGKAG 220 (351)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 220 (351)
....+...|++++|...+++..+.. +.+...+..+...+...|++++|...++......+ +...+...... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence 3344444555555555554443322 22344444445555555555555555554433321 22222111111 11111
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc-CHHhHHHHHHHHHhcCCHHHHHHHH
Q 018743 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL-DTPFFNCIISAYGQAGDVEKMGELF 299 (351)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 299 (351)
....|...+++..+.. +.+...+..+...+...|++++|...++++.+..+.+ +...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223566666666653 3356677777777777777777777777777665443 3456677777777777777777777
Q ss_pred HHHHh
Q 018743 300 LTMKE 304 (351)
Q Consensus 300 ~~~~~ 304 (351)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.26 E-value=2.1e-09 Score=82.25 Aligned_cols=188 Identities=11% Similarity=0.020 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---hHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD-VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSA---VTY 103 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 103 (351)
++..+..+...+.+.|++++|+..|+++.+..+..|. ...+..+..++.+.|++++|...|+++.+.... +. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 4455666677777888888888888887764322221 345666777788888888888888887766422 22 234
Q ss_pred HHHHHHHhh------------------cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 018743 104 NTIIDGYGK------------------AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM 165 (351)
Q Consensus 104 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (351)
..+..++.. .|++++|...|+++++.. |.+..++...... ..+...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~-- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA-- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH--
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH--
Confidence 444444443 567778888888877653 2233232221110 00000100
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743 166 GVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--VVTYNIVIETFGKAGHIEKMEEYFKKMKHRG 236 (351)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (351)
.....+...+.+.|++++|...|+.+.+..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123466788889999999999999887643321 2567788899999999999999999888763
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.25 E-value=3e-10 Score=91.39 Aligned_cols=224 Identities=7% Similarity=0.017 Sum_probs=156.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhh-cCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHH
Q 018743 78 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGK-AKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKME 156 (351)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 156 (351)
.|++++|.+++++..+.. +. .+.. .+++++|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence 567777888887776542 11 1232 56777777777664 45677889999999
Q ss_pred HHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHhHHHHHHHHHhcCCHHHHH
Q 018743 157 KWYNEFNLMGV---KA--DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFF---FP--TVVTYNIVIETFGKAGHIEKME 226 (351)
Q Consensus 157 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~ 226 (351)
..|.+...... .+ ...++..+...|...|++++|...+++...... .+ ...++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 99988754311 11 145788888999999999999999998755311 11 23567788888888 9999999
Q ss_pred HHHHHHHHcCC---Cc--cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc----cC-HHhHHHHHHHHHhcCCHHHHH
Q 018743 227 EYFKKMKHRGM---KP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI----LD-TPFFNCIISAYGQAGDVEKMG 296 (351)
Q Consensus 227 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~a~ 296 (351)
..|++..+... .+ ...++..+...+...|++++|...+++..+.... +. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999875421 11 1467888999999999999999999998764221 11 235666777788889999999
Q ss_pred HHHHHHHhcCCCCC---HH---HHHHHHHHHHHcCCHHHHHHH
Q 018743 297 ELFLTMKERHCVPD---NI---TFATMIQAYNALGMTEAAQNL 333 (351)
Q Consensus 297 ~~~~~~~~~~~~p~---~~---~~~~l~~~~~~~g~~~~A~~~ 333 (351)
..|++.. . .|+ .. ....++.++ ..|+.+.+..+
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999998 4 232 21 234455555 67787766663
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.21 E-value=1.8e-09 Score=86.90 Aligned_cols=228 Identities=13% Similarity=0.073 Sum_probs=162.3
Q ss_pred ccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHH
Q 018743 41 QSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK-FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119 (351)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 119 (351)
..|++++|.+++++..+.. +. .+.+ .++++.|...|.+. ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 4678899999999887632 11 1223 57888888888765 4567788999999
Q ss_pred HHHHHHHHhcC---CCC-CCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---CCC--HHHHHHHHHHHHhcCCHHHH
Q 018743 120 ESSFSAMVESG---GCH-PDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGV---KAD--IQTLNILTKSYGRAGMYDKM 190 (351)
Q Consensus 120 ~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a 190 (351)
...|.+..+.. +.+ .-..+|+.+...|...|++++|+..+++...... .+. ..++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 99999876542 111 1134788888999999999999999998765311 121 3567788888988 999999
Q ss_pred HHHHHHHHHcCCCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcc-HHHHHHHHHHHHhcCCHhHH
Q 018743 191 RSVMDFMQKRFFFP-----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMKPN-SITYCSLVSAYSKAGLIMKV 260 (351)
Q Consensus 191 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a 260 (351)
...+++........ ...++..+...+...|++++|+..|++.... +..+. ...+..++..+...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999876642111 1467888899999999999999999998764 21111 23566777788888999999
Q ss_pred HHHHHHhhhcCCcc-CH---HhHHHHHHHHHhcCCHHHHHHH
Q 018743 261 DSILRQVENSDVIL-DT---PFFNCIISAYGQAGDVEKMGEL 298 (351)
Q Consensus 261 ~~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~g~~~~a~~~ 298 (351)
...|++.. ..+.. +. .....++.++ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999988 54321 11 2344455555 56777666553
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.19 E-value=5.2e-08 Score=77.73 Aligned_cols=168 Identities=11% Similarity=-0.045 Sum_probs=119.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cc----HHHHH
Q 018743 176 ILTKSYGRAGMYDKMRSVMDFMQKRFF-FPTV----VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK-PN----SITYC 245 (351)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 245 (351)
..+..+...|++++|...++....... .|+. ..+..+...+...+++++|+..+++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677788888888888888776422 2221 12334566667778899999999988874222 22 33688
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhh----c-CCcc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHH
Q 018743 246 SLVSAYSKAGLIMKVDSILRQVEN----S-DVIL-DTPFFNCIISAYGQAGDVEKMGELFLTMKER----HCVPD-NITF 314 (351)
Q Consensus 246 ~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~ 314 (351)
.+...|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|++.+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888889999999999999888763 1 1111 2346788888999999999999999887642 22222 5678
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHhccc
Q 018743 315 ATMIQAYNALGM-TEAAQNLENKMIAMKEN 343 (351)
Q Consensus 315 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~ 343 (351)
..+..++.+.|+ +++|.+.+++++.....
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 888889999995 69999999988776543
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=1.2e-07 Score=81.20 Aligned_cols=299 Identities=10% Similarity=-0.030 Sum_probs=168.9
Q ss_pred cCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCC-HHH
Q 018743 6 KCK-QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHR-FDL 83 (351)
Q Consensus 6 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 83 (351)
+.| +++.|..+|+.+... -|. |+++.+..+|++.... .|+...|...+....+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHH
Confidence 456 478888888887764 333 8899999999999973 5799999998888777663 456
Q ss_pred HHHHHHHHHHc-CC-CCCHhHHHHHHHHHh----hcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH-------------
Q 018743 84 IEKILAEMSYL-GI-ECSAVTYNTIIDGYG----KAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS------------- 144 (351)
Q Consensus 84 a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~------------- 144 (351)
...+|+..... |. +.+...|...+..+. ..++.+.+..+|++.+... ...-...|.....
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKI 145 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHH
Confidence 77788877654 42 346788888887765 3467888999999998642 1111112221111
Q ss_pred -----------------------------------HHhcC--CC-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018743 145 -----------------------------------AYGNS--GN-----IEKMEKWYNEFNLMGVKADIQTLNILTKSYG 182 (351)
Q Consensus 145 -----------------------------------~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (351)
.-... |- .+.+..+|+++.... +.+...|...+..+.
T Consensus 146 ~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 146 VGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 00000 00 122344555544432 334555555566666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------C---CccHHHHHHHHHH
Q 018743 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG---------M---KPNSITYCSLVSA 250 (351)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~ 250 (351)
+.|+.+.|..++++.... +.+...+.. |......++. ++.+.+.- . ......|...+..
T Consensus 225 ~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~ 295 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence 666677777777666665 222222221 1111111111 11211110 0 0012345555555
Q ss_pred HHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 018743 251 YSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329 (351)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 329 (351)
..+.++.+.|..+|+++ +.. ..+...|...+..-... ++.+.|..+|+...+. .+-++..+...++...+.|+.+.
T Consensus 296 ~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 55677788888888888 322 22444444333322223 3688888888888775 23235556667777778888888
Q ss_pred HHHHHHHH
Q 018743 330 AQNLENKM 337 (351)
Q Consensus 330 A~~~~~~~ 337 (351)
|..+|+++
T Consensus 373 aR~l~er~ 380 (493)
T 2uy1_A 373 ARALFKRL 380 (493)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 88887775
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.18 E-value=1.4e-07 Score=75.83 Aligned_cols=223 Identities=7% Similarity=-0.037 Sum_probs=128.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcC-C-CHH
Q 018743 77 KFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAK-KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNS-G-NIE 153 (351)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 153 (351)
..+..++|+++++.+...+ |-+..+|+.--.++...| .+++++..++.++... +.+..+|+.-...+.+. + +++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChH
Confidence 3344456666666666654 335555555555555555 3666666666666553 44555555554444444 4 566
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----
Q 018743 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYD--------KMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH---- 221 (351)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 221 (351)
+++++++.+.+.. +.+...|+.-...+.+.|.++ ++++.++++.+..+. +...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 6666666666543 345555554444444444444 667777777666544 66667666666666654
Q ss_pred ---HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH--------------------hHHHHHHHHhhhcC-----Cc
Q 018743 222 ---IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI--------------------MKVDSILRQVENSD-----VI 273 (351)
Q Consensus 222 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~ 273 (351)
++++++.+++..... +-|...|+.+-..+.+.|+. .........+.... -.
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 577777777777664 44666676666555555543 22222222222221 12
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
+++..+..++..|...|+.++|.++++.+.+.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 36667777777888888888888888887643
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.17 E-value=2.5e-09 Score=81.01 Aligned_cols=127 Identities=11% Similarity=-0.009 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 018743 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252 (351)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 252 (351)
.+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667777788888888877663 4567777777788888888888888888877764 456677777778888
Q ss_pred hcCCHhHHHHHHHHhhhcCCccCH----------------HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 253 KAGLIMKVDSILRQVENSDVILDT----------------PFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
..|++++|...+++..+..+. +. ..+..+..++...|++++|.+.|+++.+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888888888877765443 22 56677777777788888888888777764
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.14 E-value=9.8e-10 Score=77.92 Aligned_cols=97 Identities=13% Similarity=-0.024 Sum_probs=56.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286 (351)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (351)
..+..+...+.+.|++++|...|++..... |.+...|..+..++...|++++|...|++..+..+. ++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 344455555566666666666666665553 335555666666666666666666666666655544 455555566666
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 018743 287 GQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 287 ~~~g~~~~a~~~~~~~~~~ 305 (351)
...|++++|+..|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666553
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.13 E-value=4.4e-08 Score=78.17 Aligned_cols=127 Identities=12% Similarity=0.011 Sum_probs=63.5
Q ss_pred HHHHhhcCChHHHHHHHHHHHhcCCCCCCHh----HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-CC----HHHHHHH
Q 018743 107 IDGYGKAKKFEEMESSFSAMVESGGCHPDIF----TLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-AD----IQTLNIL 177 (351)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 177 (351)
+..+...|++++|...+++..+.....|+.. .+..+...+...+++++|+..+++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5556667777777777777665432222211 2223445555566666666666666552211 11 1245555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 178 TKSYGRAGMYDKMRSVMDFMQKR-----FFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMK 233 (351)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (351)
..+|...|++++|...++++.+. +..+ ...++..+...|...|++++|...+++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55566666666666655554421 0001 11234444445555555555555544443
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.13 E-value=9.4e-09 Score=74.35 Aligned_cols=132 Identities=11% Similarity=-0.039 Sum_probs=95.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286 (351)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (351)
..+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 445666677777888888888888877763 446777777888888888888888888887776544 667777888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743 287 GQAGDVEKMGELFLTMKERHCVPDNITFAT--MIQAYNALGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 287 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~ 341 (351)
...|++++|...|+++.+.. +.+...+.. .+..+...|++++|...+++.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 88888888888888887652 224444433 3334677788888888888776544
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.12 E-value=7.7e-10 Score=78.53 Aligned_cols=98 Identities=11% Similarity=0.015 Sum_probs=64.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285 (351)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (351)
...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+++....+. ++..+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 4445556666666777777777777766653 445666666666777777777777777776666544 55666666667
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 018743 286 YGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~ 305 (351)
+...|++++|.+.|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766653
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.10 E-value=2.8e-08 Score=79.31 Aligned_cols=169 Identities=11% Similarity=-0.049 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---Ccc--HH
Q 018743 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT-----VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM---KPN--SI 242 (351)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 242 (351)
.+...+..+...|++++|...+....+...... ...+..+...+...|++++|...+.+..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456666777777777777776655422211 12233345556677788888888877764311 111 34
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhh---cCCc-c--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CH
Q 018743 243 TYCSLVSAYSKAGLIMKVDSILRQVEN---SDVI-L--DTPFFNCIISAYGQAGDVEKMGELFLTMKERH----CVP-DN 311 (351)
Q Consensus 243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~ 311 (351)
+++.+...|...|++++|...++++.+ .... + ...++..+..+|...|++++|++.+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677778888888888888888877652 2111 1 12467777888888888888888888776431 111 15
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHHHhc
Q 018743 312 ITFATMIQAYNALGMTEAA-QNLENKMIAMK 341 (351)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 341 (351)
.+|..+..+|.+.|++++| ...+++++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 5677788888888888888 77777776543
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.10 E-value=5.2e-09 Score=71.91 Aligned_cols=100 Identities=8% Similarity=-0.054 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018743 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322 (351)
Q Consensus 243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (351)
.+......+.+.|++++|+..|++..+..+. +...|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 3444555555555555555555555555443 45555555555555666666666665555542 223445555555566
Q ss_pred HcCCHHHHHHHHHHHHHhcccC
Q 018743 323 ALGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~~~~~ 344 (351)
..|++++|.+.|+++++.+|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HCCCHHHHHHHHHHHHHHCcCC
Confidence 6666666666666665555543
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.09 E-value=1.4e-07 Score=75.74 Aligned_cols=224 Identities=9% Similarity=-0.037 Sum_probs=170.3
Q ss_pred HhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-C
Q 018743 110 YGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG-NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-G-M 186 (351)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 186 (351)
..+.+..++|++++++++... +-+..+|+.--..+...| ++++++++++.+.... +.+..+|+.-...+.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 334455678999999999874 566777888777777888 5999999999999865 56777788777777776 6 8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--
Q 018743 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIE--------KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL-- 256 (351)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 256 (351)
++++++.++.+.+...+ +...|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 89999999999887554 7777777666666656555 8999999999886 5588889888888888776
Q ss_pred -----HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC-----
Q 018743 257 -----IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV--------------------EKMGELFLTMKERH----- 306 (351)
Q Consensus 257 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~----- 306 (351)
++++++.++++....+. |...|+.+-..+.+.|+. ....+....+...+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 68899999999988877 888898877777776654 23333333333221
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743 307 CVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 339 (351)
-.+++..+..++..|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 135677888999999999999999999999863
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.08 E-value=4.5e-09 Score=78.88 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=34.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCCH
Q 018743 148 NSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR----FF-FPTVVTYNIVIETFGKAGHI 222 (351)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 222 (351)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++.... +. ......+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 11123344444555555555555555555444331 00 01123334444444444444
Q ss_pred HHHHHHHHHH
Q 018743 223 EKMEEYFKKM 232 (351)
Q Consensus 223 ~~a~~~~~~~ 232 (351)
++|...+.+.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.07 E-value=3.1e-08 Score=74.96 Aligned_cols=131 Identities=8% Similarity=-0.049 Sum_probs=110.8
Q ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 018743 137 FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETF 216 (351)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (351)
..+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...++....... .+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 345667788889999999999998873 56888999999999999999999999999887653 3678888999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcc----------------HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743 217 GKAGHIEKMEEYFKKMKHRGMKPN----------------SITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273 (351)
Q Consensus 217 ~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 273 (351)
...|++++|...+++..+.. +.+ ...+..+..++...|++++|...++...+..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999999998864 222 267888999999999999999999999887654
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=1.4e-09 Score=86.14 Aligned_cols=96 Identities=8% Similarity=-0.014 Sum_probs=48.5
Q ss_pred HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 100 AVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTK 179 (351)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 179 (351)
...+..+...+...|++++|...|++.++.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444555555555555555555555555442 3344455555555555555555555555554432 233444444445
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 018743 180 SYGRAGMYDKMRSVMDFMQ 198 (351)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~ 198 (351)
++...|++++|...|+...
T Consensus 81 ~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 5555555555555554443
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.06 E-value=3.8e-09 Score=77.50 Aligned_cols=121 Identities=8% Similarity=0.022 Sum_probs=91.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHhcCCH--h
Q 018743 182 GRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA-YSKAGLI--M 258 (351)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 258 (351)
...|++++|...++......+ .+...|..+...+...|++++|...|++..+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 456788888888888776643 367778888888888888888888888887764 4466777777777 6778887 8
Q ss_pred HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
+|...++.+.+..+. +...+..+...+...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888888877654 6777788888888888888888888888875
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.05 E-value=6.6e-09 Score=76.21 Aligned_cols=123 Identities=6% Similarity=0.053 Sum_probs=87.1
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHH-HHhcCCH-
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKS-CTKFHRF- 81 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~- 81 (351)
+...|++++|...++...+..+. +..+|..+...+...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 55677888888888887776544 67788888888888888888888888877643 3355666667766 6677777
Q ss_pred -HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 018743 82 -DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESG 130 (351)
Q Consensus 82 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 130 (351)
++|...++++.+.. +.+...+..+..++...|++++|...|+++.+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888877765 4456777777778888888888888888877653
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.05 E-value=4.6e-09 Score=83.23 Aligned_cols=99 Identities=7% Similarity=-0.114 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 018743 64 DVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143 (351)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 143 (351)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 45667777777888888888888888887764 4477778888888888888888888888887653 45666777788
Q ss_pred HHHhcCCCHHHHHHHHHHHHhc
Q 018743 144 SAYGNSGNIEKMEKWYNEFNLM 165 (351)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~ 165 (351)
.++...|++++|...|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888877653
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.05 E-value=1.4e-08 Score=69.78 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 018743 30 DVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDG 109 (351)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (351)
..+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 345555555556666666666665555432 3344555555555555566666666555555544 3345555555555
Q ss_pred HhhcCChHHHHHHHHHHHhc
Q 018743 110 YGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~ 129 (351)
+...|++++|.+.|++.++.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 55555555665555555554
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.04 E-value=2.6e-09 Score=75.75 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=73.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743 16 LFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 95 (351)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 95 (351)
.|+.+.+..+. +...+..+...+.+.|++++|+..|+...... +.+...|..+..++...|++++|...|++.....
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444444322 45566667777777777777777777776532 3456667777777777777777777777777664
Q ss_pred CCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 96 IECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
|.+...+..+..+|...|++++|...|++..+.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445666777777777777777777777777665
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=1.7e-07 Score=74.78 Aligned_cols=166 Identities=10% Similarity=0.001 Sum_probs=82.5
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCH----hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC---CC--H
Q 018743 101 VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDI----FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK---AD--I 171 (351)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 171 (351)
..+...+..+...|++++|.+.+.+..+.....++. ..+..+...+...|++++|+..+++....... +. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344455666677777777777777766543111111 11233444555666677776666665542111 11 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCC-C--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCc-c
Q 018743 172 QTLNILTKSYGRAGMYDKMRSVMDFMQK---RFFF-P--TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRG----MKP-N 240 (351)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 240 (351)
.+++.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3555556666666666666666655542 1110 0 11345555555555566666655555544321 000 1
Q ss_pred HHHHHHHHHHHHhcCCHhHH-HHHHHH
Q 018743 241 SITYCSLVSAYSKAGLIMKV-DSILRQ 266 (351)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~a-~~~~~~ 266 (351)
..++..+...+...|++++| ...+++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33444555555555555555 444443
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.03 E-value=7.3e-09 Score=77.70 Aligned_cols=159 Identities=8% Similarity=-0.004 Sum_probs=94.9
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhcc---CCCC-ccHHHHHHHHHHHHhcC
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSV---SDCK-PDVYTYSILIKSCTKFH 79 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~~~~~~l~~~~~~~~ 79 (351)
+...|++++|.++++.+.. .+.....++..+...+...|++++|+..+++.... .+.. ....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3467888888885555543 22335677788888888888888888888776652 1111 22345666777777788
Q ss_pred CHHHHHHHHHHHHHc----CCC--CCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHhcC
Q 018743 80 RFDLIEKILAEMSYL----GIE--CSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNS 149 (351)
Q Consensus 80 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 149 (351)
++++|...+++.... +.. ....++..+...+...|++++|...+++..+......+ ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 888887777776543 101 12345666677777777777777777776532100111 12345556666667
Q ss_pred CCHHHHHHHHHHHH
Q 018743 150 GNIEKMEKWYNEFN 163 (351)
Q Consensus 150 ~~~~~a~~~~~~~~ 163 (351)
|++++|.+.+++..
T Consensus 161 g~~~~A~~~~~~al 174 (203)
T 3gw4_A 161 KNLLEAQQHWLRAR 174 (203)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 77777766666543
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.03 E-value=4.4e-08 Score=70.74 Aligned_cols=128 Identities=9% Similarity=-0.100 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Q 018743 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYS 252 (351)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 252 (351)
.+..+...+...|++++|...++........ +...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4455566666677777777777766655332 56666667777777777777777777777653 445667777777777
Q ss_pred hcCCHhHHHHHHHHhhhcCCccCHHhHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 018743 253 KAGLIMKVDSILRQVENSDVILDTPFFNCI--ISAYGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~ 303 (351)
..|++++|...++++.+..+. +...+..+ +..+...|++++|++.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777777777766543 44444333 333666777777777777654
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.02 E-value=3.3e-08 Score=76.78 Aligned_cols=29 Identities=3% Similarity=-0.130 Sum_probs=17.9
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHhHHHHH
Q 018743 112 KAKKFEEMESSFSAMVESGGCHPDIFTLNSM 142 (351)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 142 (351)
..++...|.+.|.++.+.. +.....|..+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~ 46 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGR 46 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhH
Confidence 4667777777777776653 4444556555
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.02 E-value=2.1e-08 Score=77.89 Aligned_cols=186 Identities=9% Similarity=-0.016 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHhccCChHHHHHHHHHhhccCCCCcc---------------
Q 018743 7 CKQPEQASLLFEVMLSDGLKPSVDVYTAL-------VSAYGQSGLLDEAFSTINDMKSVSDCKPD--------------- 64 (351)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------- 64 (351)
.++.+.|.+.|.++.+..+. ....|..+ ...+...++..+++..+..-... .|+
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l---~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI---SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC---CGGGGCCEEECCTTTCCC
T ss_pred CCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC---ChhhhhhhhccCCccccc
Confidence 45666666666666665544 55556555 33444444444444433333321 111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC--
Q 018743 65 -------VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD-- 135 (351)
Q Consensus 65 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 135 (351)
...+......+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccH
Confidence 1122223334444555555555555444332 211133333344445555555555554332210 110
Q ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 136 IFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKAD--IQTLNILTKSYGRAGMYDKMRSVMDFMQKR 200 (351)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (351)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 12334444444555555555555554442221121 223333444444444444444444444443
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.01 E-value=2.5e-08 Score=70.65 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018743 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320 (351)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (351)
...+..+...+.+.|++++|...|+++.+.++. +...|..+..++...|++++|+..|+++.+.. +.++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 344555555555666666666666666555544 55555566666666666666666666665542 2234555555666
Q ss_pred HHHcCCHHHHHHHHHHHHHhccc
Q 018743 321 YNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
|...|++++|...|+++++..|+
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 66666666666666666655543
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.01 E-value=4.6e-08 Score=66.73 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=64.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285 (351)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (351)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 3445555555666666666666666665543 334555566666666666666666666666554433 45555666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018743 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYN 322 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 322 (351)
+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 666666666666666665542 223344444444443
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.00 E-value=1.1e-08 Score=72.02 Aligned_cols=97 Identities=12% Similarity=0.048 Sum_probs=64.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286 (351)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (351)
..+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...|++..+.++. ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 344455566666777777777777766653 445666666777777777777777777776666554 555666666777
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 018743 287 GQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 287 ~~~g~~~~a~~~~~~~~~~ 305 (351)
...|++++|.+.|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777766653
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.99 E-value=1.9e-06 Score=68.88 Aligned_cols=232 Identities=9% Similarity=0.013 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC----------hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCC-
Q 018743 82 DLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK----------FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSG- 150 (351)
Q Consensus 82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 150 (351)
++|+.+++.+...+ |-+..+|+.--.++...+. +++++.+++.+.... +.+..+|+.-.-.+.+.+
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCc
Confidence 35667776666654 3344455543333332222 455555666555542 445555555444444444
Q ss_pred -CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 018743 151 -NIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM-YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY 228 (351)
Q Consensus 151 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 228 (351)
++++++.+++.+.+.. +.|...|+.-...+...|. ++++++.++.+.+..+. +...|+.....+...+....+-
T Consensus 124 ~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~-- 199 (331)
T 3dss_A 124 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG-- 199 (331)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-----
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccc--
Confidence 2555566665555544 3444555544444445554 35555555555554333 4444544443333321000000
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc-----------CCHHHHHH
Q 018743 229 FKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-----------GDVEKMGE 297 (351)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~ 297 (351)
..+ . ...+.++++++.+.......+. |...|+-+-..+.+. +.++++++
T Consensus 200 -----~~~-~-------------~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 200 -----PQG-R-------------LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp ---------C-------------CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred -----ccc-c-------------cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 000 0 0002244455555555544444 444444333333322 34667777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHhccc
Q 018743 298 LFLTMKERHCVPDNITFATMIQA-----YNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 298 ~~~~~~~~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
.++++.+. .||. .|..+..+ ....|..+++...+.++++.+|.
T Consensus 260 ~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 260 SCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 77777764 4443 23222111 12356677778888888777765
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.99 E-value=5.1e-08 Score=66.52 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=37.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743 31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110 (351)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (351)
.+..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34444444444444444444444443321 1223333333444444444444444444443332 22333333344444
Q ss_pred hhcCChHHHHHHHHHHH
Q 018743 111 GKAKKFEEMESSFSAMV 127 (351)
Q Consensus 111 ~~~~~~~~a~~~~~~~~ 127 (351)
...|++++|...++++.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 44444444444444433
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.99 E-value=4.2e-08 Score=67.55 Aligned_cols=118 Identities=13% Similarity=0.041 Sum_probs=74.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285 (351)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (351)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++...+..+. +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 4455556666666677777777776666553 335566666666667777777777777766665443 45666666677
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 018743 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 326 (351)
+...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777777777766642 2245556666666666554
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.98 E-value=3.7e-08 Score=68.14 Aligned_cols=118 Identities=8% Similarity=-0.048 Sum_probs=63.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284 (351)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (351)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 34445555555556666666666666655542 334555555556666666666666666665554433 4555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 018743 285 AYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALG 325 (351)
Q Consensus 285 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 325 (351)
++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 6666666666666666655431 112334444444444433
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.97 E-value=4.4e-08 Score=67.77 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 108 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (351)
...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3344444444444444444444444444321 2233334444444444444444444444444332 223334444444
Q ss_pred HHhhcCChHHHHHHHHHHHh
Q 018743 109 GYGKAKKFEEMESSFSAMVE 128 (351)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~ 128 (351)
++...|++++|.+.|++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444444433
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.96 E-value=3.4e-08 Score=68.06 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHh
Q 018743 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYG 147 (351)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (351)
+..+...+...|+++.|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHHH
Confidence 3333333444444444444444443332 2233334444444444444444444444443331 222333334444444
Q ss_pred cCCCHHHHHHHHHHHH
Q 018743 148 NSGNIEKMEKWYNEFN 163 (351)
Q Consensus 148 ~~~~~~~a~~~~~~~~ 163 (351)
..|++++|...+++..
T Consensus 92 ~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 4444444444444433
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.95 E-value=5.3e-08 Score=79.24 Aligned_cols=94 Identities=11% Similarity=-0.063 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321 (351)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (351)
..+..+..++.+.|++++|...++++.+..+. +...+..+..++...|++++|+..|+++.+.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45555555556666666666666665555443 45555555666666666666666666655541 22344555555555
Q ss_pred HHcCCHHHH-HHHHHHH
Q 018743 322 NALGMTEAA-QNLENKM 337 (351)
Q Consensus 322 ~~~g~~~~A-~~~~~~~ 337 (351)
...|+.++| ...+++|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 555655555 3344444
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.95 E-value=3.6e-08 Score=71.21 Aligned_cols=99 Identities=13% Similarity=-0.013 Sum_probs=83.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284 (351)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (351)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45667778888888999999999999988874 457788888888899999999999999988887765 6788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 018743 285 AYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 285 ~~~~~g~~~~a~~~~~~~~~~ 305 (351)
++...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999988865
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.93 E-value=4.9e-08 Score=67.02 Aligned_cols=96 Identities=8% Similarity=-0.041 Sum_probs=54.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286 (351)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (351)
..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+..+. +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344455555556666666666666655543 334555555555566666666666666655555443 455555555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 018743 287 GQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 287 ~~~g~~~~a~~~~~~~~~ 304 (351)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 566666666666655554
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.92 E-value=8.2e-08 Score=78.11 Aligned_cols=130 Identities=8% Similarity=-0.066 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 018743 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--------------VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237 (351)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 237 (351)
..+..+...+.+.|++++|...|++......... ...|..+..++.+.|++++|+..+++.++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444455555555555555555555554432211 4677788888888888888888888888774
Q ss_pred CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 018743 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKM-GELFLTMK 303 (351)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 303 (351)
+.+...+..+..++...|++++|...|+++.+..+. +...+..+..++...|+.++| ..+|+.|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557778888888888888999998888888887665 677888888888888888887 44566554
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.91 E-value=7.8e-08 Score=67.00 Aligned_cols=98 Identities=6% Similarity=-0.090 Sum_probs=60.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284 (351)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (351)
+...+..+...+...|++++|...|.+..... +.+...+..+..++...|++++|...++...+..+. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 45556666666666666666666666666553 334556666666666666666666666666655444 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 018743 285 AYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 285 ~~~~~g~~~~a~~~~~~~~~ 304 (351)
++...|++++|...|+++.+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666554
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.90 E-value=7.3e-06 Score=65.57 Aligned_cols=244 Identities=7% Similarity=-0.036 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC----------hHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcC--
Q 018743 12 QASLLFEVMLSDGLKPSVDVYTALVSAYGQSGL----------LDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFH-- 79 (351)
Q Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 79 (351)
+|+.+++.++..++. +..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...+...+
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcc
Confidence 556666666655444 44555544433333222 345555555555422 334445554444444444
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCC-hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHH
Q 018743 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKK-FEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKW 158 (351)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 158 (351)
++++++.+++.+.+.. +.|..+|+.-.-++...|. ++++++.++++++.. +.|..+|+.....+.+.+....+
T Consensus 125 ~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~--- 198 (331)
T 3dss_A 125 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDS--- 198 (331)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC-----
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcccc---
Confidence 2555555555555554 3355555544444444454 355555555555542 34444444443333222000000
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-----------CCHHHHHH
Q 018743 159 YNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKA-----------GHIEKMEE 227 (351)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~ 227 (351)
++ ..-...+.++++++.+.......+. |...|+-+-..+.+. +.++++++
T Consensus 199 ----------~~--------~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 199 ----------GP--------QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred ----------cc--------ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 00 0000002244455555554444322 444444333333222 34567777
Q ss_pred HHHHHHHcCCCccH-HHHHHHH---HHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743 228 YFKKMKHRGMKPNS-ITYCSLV---SAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286 (351)
Q Consensus 228 ~~~~~~~~~~~~~~-~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (351)
.+.++.+. .|+. -.+..++ ......|..+++...+.++.+.++. ...-|.-+...+
T Consensus 260 ~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~-r~~~y~d~~~~~ 319 (331)
T 3dss_A 260 SCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG-GHHHHHHHHHHH
T ss_pred HHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc-hhhHHHHHHHHH
Confidence 77777665 3332 1111111 1122346666777777777766544 444455444433
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.89 E-value=2.5e-08 Score=66.67 Aligned_cols=103 Identities=11% Similarity=0.006 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 018743 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP--DNITFATMI 318 (351)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~ 318 (351)
...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 345556666667777777777777776665544 56667777777777777777777777777642 22 466677777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHhcccCC
Q 018743 319 QAYNAL-GMTEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 319 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 345 (351)
.++... |++++|.+.+++++...|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777777 888888888887777766543
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.88 E-value=4.1e-08 Score=67.52 Aligned_cols=96 Identities=11% Similarity=0.029 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc--C----HHhHHH
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL--D----TPFFNC 281 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~~ 281 (351)
.+..+...+.+.|++++|+..|++.++.. |.+...|..+..+|...|++++|+..+++..+..+.. + ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555543 3344555555555555555555555555554432211 0 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 018743 282 IISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 282 l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
+..++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555544
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.87 E-value=9.8e-08 Score=64.33 Aligned_cols=98 Identities=12% Similarity=0.006 Sum_probs=63.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285 (351)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (351)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 4455566666667777777777777766653 345566666666666777777777777766665443 55566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 018743 286 YGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~ 305 (351)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777766654
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.87 E-value=4e-08 Score=66.89 Aligned_cols=99 Identities=6% Similarity=-0.129 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNA 323 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 323 (351)
+..+...+.+.|++++|...++++.+..+. +...+..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 444556666777777777777777766554 66677777777777777777777777777652 2245666777777777
Q ss_pred cCCHHHHHHHHHHHHHhcccC
Q 018743 324 LGMTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 324 ~g~~~~A~~~~~~~~~~~~~~ 344 (351)
.|++++|...++++++..|..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 777777777777777766654
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.86 E-value=8e-09 Score=77.31 Aligned_cols=129 Identities=13% Similarity=-0.062 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----------------HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN----------------SITYCSLVSAYSKAGLIMKVDSILRQVENSD 271 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 271 (351)
.+..+...+...|++++|...|.+..... +.+ ...+..+..++...|++++|...++...+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34444455555555555555555555431 111 2566667777777777777777777777665
Q ss_pred CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 018743 272 VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQ-NLENKMIA 339 (351)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 339 (351)
+. +...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...++.+++. ..+..+..
T Consensus 119 p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 KN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 56677777777777777777777777777652 234556666666666666666555 44444443
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.86 E-value=2.8e-08 Score=69.88 Aligned_cols=99 Identities=11% Similarity=-0.012 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 107 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (351)
+...+..+...+.+.|++++|+..|+...... +.+...|..+..++...|++++|...|++..... |.+...+..+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 34455556666666777777777776666532 3355566666666666777777777777666654 44556666666
Q ss_pred HHHhhcCChHHHHHHHHHHHhc
Q 018743 108 DGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
.++...|++++|...|++..+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666777777777777666554
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.85 E-value=2.3e-07 Score=63.56 Aligned_cols=98 Identities=7% Similarity=-0.156 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321 (351)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (351)
..+..+...+...|++++|...|++..+..+. +...+..+..++.+.|++++|+..+++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34555555566666666666666666655443 55566666666666666666666666666542 22355555666666
Q ss_pred HHcCCHHHHHHHHHHHHHhc
Q 018743 322 NALGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~~ 341 (351)
...|++++|...++++++..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 66666666666666666655
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.84 E-value=1.4e-08 Score=76.04 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=67.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHH
Q 018743 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAY 286 (351)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (351)
..+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+..+. +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 567777788888888888888888888764 556777888888888888888888888888877654 667777777777
Q ss_pred HhcCCHHHHH-HHHHHHHh
Q 018743 287 GQAGDVEKMG-ELFLTMKE 304 (351)
Q Consensus 287 ~~~g~~~~a~-~~~~~~~~ 304 (351)
...++..++. ..+..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7777666665 44454443
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=4.4e-07 Score=61.02 Aligned_cols=95 Identities=12% Similarity=0.050 Sum_probs=40.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 018743 31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGY 110 (351)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (351)
.+..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34444444444444444444444444321 2233334444444444444444444444444332 22333444444444
Q ss_pred hhcCChHHHHHHHHHHHh
Q 018743 111 GKAKKFEEMESSFSAMVE 128 (351)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~ 128 (351)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 444444444444444433
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.81 E-value=3.2e-07 Score=62.97 Aligned_cols=101 Identities=13% Similarity=0.032 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCC----HHHHH
Q 018743 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH--CVPD----NITFA 315 (351)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~----~~~~~ 315 (351)
..+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34556666777777777777777777766554 56667777777777777777777777766431 1111 13556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 316 TMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
.+..++...|++++|++.|++.++..++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6666777777777777777777665544
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.80 E-value=1.5e-07 Score=67.98 Aligned_cols=100 Identities=6% Similarity=-0.033 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 107 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (351)
+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|+..+++..+.. +.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 46677777888888888888888888877643 3466777788888888888888888888887775 44677788888
Q ss_pred HHHhhcCChHHHHHHHHHHHhcC
Q 018743 108 DGYGKAKKFEEMESSFSAMVESG 130 (351)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~ 130 (351)
.++...|++++|...|++.++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88888888888888888887764
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.78 E-value=9e-07 Score=61.47 Aligned_cols=96 Identities=10% Similarity=-0.072 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 018743 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250 (351)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 250 (351)
...+..+...+...|++++|...|.......+. +...|..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 344444444445555555555555544443222 34444444444445555555555555444432 2234444444444
Q ss_pred HHhcCCHhHHHHHHHHhh
Q 018743 251 YSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~ 268 (351)
+...|++++|...+++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555554444
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.77 E-value=2.4e-07 Score=63.66 Aligned_cols=111 Identities=11% Similarity=0.015 Sum_probs=67.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc--cC----HHhHH
Q 018743 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI--LD----TPFFN 280 (351)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 280 (351)
..+..+...+...|++++|...+.+..... +.+...+..+...+...|++++|...++++.+..+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555666666666777776666666553 445566666666666677777777776666554322 11 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018743 281 CIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320 (351)
Q Consensus 281 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (351)
.+..++...|++++|.+.|+++.+. .|+......+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 6677777777777777777777664 3455444444433
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=9.9e-07 Score=62.09 Aligned_cols=110 Identities=8% Similarity=-0.010 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPD----VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTY 103 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 103 (351)
+...+..+...+...|++++|++.|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 5667777777777888888888888877763 344 4566667777777777777777777776664 3456677
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHH
Q 018743 104 NTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMI 143 (351)
Q Consensus 104 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 143 (351)
..+..++...|++++|...|++..+.. +.+...+..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHH
Confidence 777777777777777777777776652 33344444333
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=4.6e-07 Score=63.86 Aligned_cols=98 Identities=9% Similarity=-0.066 Sum_probs=72.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHH
Q 018743 205 TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN----SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFN 280 (351)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 280 (351)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+++..+..+. +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 5566777777777888888888888887765 343 566777777777788888888888777766544 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 281 CIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 281 ~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777888888888888877764
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=3.6e-07 Score=60.86 Aligned_cols=94 Identities=9% Similarity=-0.031 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCC--CHhHHHHHHHH
Q 018743 68 YSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHP--DIFTLNSMISA 145 (351)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~ 145 (351)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHHH
Confidence 3444444444555555555555444443 2234444444444444555555555555444432 22 33444444444
Q ss_pred HhcC-CCHHHHHHHHHHHHh
Q 018743 146 YGNS-GNIEKMEKWYNEFNL 164 (351)
Q Consensus 146 ~~~~-~~~~~a~~~~~~~~~ 164 (351)
+... |++++|.+.++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 4444 455555554444443
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3.3e-06 Score=71.30 Aligned_cols=198 Identities=9% Similarity=-0.010 Sum_probs=109.2
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcCCCCCCH---------------hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-C
Q 018743 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDI---------------FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK-A 169 (351)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 169 (351)
-...+.+.|++++|++.|..+.+......+. ..+..+...|...|++++|.+.+..+...--. +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3456777888888888888887764222221 12556667777777777777777665432101 1
Q ss_pred CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-
Q 018743 170 DI----QTLNILTKSYGRAGMYDKMRSVMDFMQKR----FFFP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR--GM- 237 (351)
Q Consensus 170 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 237 (351)
+. .+.+.+...+...|+++.+..++...... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 12222333334456677777766665331 1111 2345556666667777777777776665532 11
Q ss_pred -Cc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC--C-cc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 238 -KP-NSITYCSLVSAYSKAGLIMKVDSILRQVENSD--V-IL---DTPFFNCIISAYGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 238 -~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 303 (351)
.+ ...++..++..|...|++++|..+++...... . .| -...+..+...+...|++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 23455666666666777777776666654321 1 11 12234445555566666666666666554
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.72 E-value=5.2e-07 Score=61.99 Aligned_cols=94 Identities=9% Similarity=-0.040 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccC---HHhHHHHH
Q 018743 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS---ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD---TPFFNCII 283 (351)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 283 (351)
..+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...++.+.+..+. + ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 345566777788888888888777653 2223 46667777777788888888888777766543 3 45566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 018743 284 SAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 284 ~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
.++...|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777778888888888777765
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.72 E-value=2.3e-07 Score=63.78 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHH
Q 018743 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHC--VPD----NITF 314 (351)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~ 314 (351)
...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...++++.+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456788888999999999999999999887654 778899999999999999999999999886521 122 6788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 315 ATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 315 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
..+..++...|++++|...++++++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999998763
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.8e-06 Score=72.95 Aligned_cols=197 Identities=6% Similarity=-0.132 Sum_probs=143.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH----------------hHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC
Q 018743 72 IKSCTKFHRFDLIEKILAEMSYLGIECSA----------------VTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD 135 (351)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 135 (351)
.+.+...|++++|.+.|..+.+....... ..+..+...|...|++++|.+.+..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45577899999999999999887532211 24678899999999999999999988764322222
Q ss_pred Hh----HHHHHHHHHhcCCCHHHHHHHHHHHHh----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C
Q 018743 136 IF----TLNSMISAYGNSGNIEKMEKWYNEFNL----MGVKAD-IQTLNILTKSYGRAGMYDKMRSVMDFMQKRF----F 202 (351)
Q Consensus 136 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~ 202 (351)
.. +.+.+-..+...|+++.+..++..... .+..+. ..++..+...+...|++++|..++..+...- .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 233344455667899999999988754 222232 4577889999999999999999999875531 1
Q ss_pred C-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcc--HHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743 203 F-PTVVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMKPN--SITYCSLVSAYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 203 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 268 (351)
. .....+..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 12467888899999999999999999987643 21222 2455666777788899999998887654
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.70 E-value=3.1e-07 Score=65.73 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---Cc--cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc-----cCHH
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGM---KP--NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI-----LDTP 277 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~ 277 (351)
++..+...+...|++++|...+.+..+... .+ ...++..+...+...|++++|...+++..+.... ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555556666666666666666543210 00 0135566666677777777777777665432111 1134
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKER----HCV-PDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
++..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++.++....
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5666777788888888888888876632 111 11345677778888889999999888888776543
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.68 E-value=7e-08 Score=82.37 Aligned_cols=118 Identities=8% Similarity=-0.124 Sum_probs=60.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH
Q 018743 180 SYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK 259 (351)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 259 (351)
.+.+.|++++|...+++..+.... +...|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344555666666666655554222 35555555555666666666666666555543 3344555555555555666666
Q ss_pred HHHHHHHhhhcCCccCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 018743 260 VDSILRQVENSDVILDTPFFNCIISA--YGQAGDVEKMGELFL 300 (351)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 300 (351)
|...++++.+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666555554333 23333334333 555555555555555
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.67 E-value=1.7e-07 Score=80.10 Aligned_cols=118 Identities=14% Similarity=0.018 Sum_probs=94.8
Q ss_pred ccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHH
Q 018743 3 MLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFD 82 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (351)
.+.+.|++++|...|++..+..+. +..+|..+..++.+.|++++|++.+++..+.. +.+...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 467889999999999999887655 78899999999999999999999999998753 446778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHH--HhhcCChHHHHHHHH
Q 018743 83 LIEKILAEMSYLGIECSAVTYNTIIDG--YGKAKKFEEMESSFS 124 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 124 (351)
+|.+.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998875 3455566666665 788899999999988
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.66 E-value=4.1e-07 Score=65.41 Aligned_cols=99 Identities=10% Similarity=0.041 Sum_probs=72.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------C---------CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 018743 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHR--------G---------MKPNSITYCSLVSAYSKAGLIMKVDSILRQVE 268 (351)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 268 (351)
...+......+.+.|++++|+..|.+.+.. . -+.+...|..+..++.+.|++++|...++.+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677778888888888888888887764 0 02233566777777777788888888877777
Q ss_pred hcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 269 NSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
+.++. +...|..+..++...|++++|...|++..+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 76654 6677777777777788888888877777764
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.66 E-value=5.3e-07 Score=61.25 Aligned_cols=95 Identities=7% Similarity=-0.100 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (351)
+..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..+..+. +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3445566677777777777777777663 446667777777777777777777777777776655 56677777777777
Q ss_pred cCCHHHHHHHHHHHHhc
Q 018743 289 AGDVEKMGELFLTMKER 305 (351)
Q Consensus 289 ~g~~~~a~~~~~~~~~~ 305 (351)
.|++++|+..+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777653
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.66 E-value=9.3e-07 Score=62.07 Aligned_cols=103 Identities=14% Similarity=-0.006 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc------C-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVIL------D-----TPFFNCIISAYGQAGDVEKMGELFLTMKER-----HC 307 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~ 307 (351)
+......+...|++++|...|++..+..+.. + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444455556666666666666655543321 2 237888888899999999999999888874 12
Q ss_pred CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 308 VPD-NITF----ATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 308 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
.|+ ...| .....++...|++++|+..|++.++..|....
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 454 5577 88889999999999999999999999887654
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.62 E-value=2e-07 Score=75.89 Aligned_cols=101 Identities=9% Similarity=0.042 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHH-
Q 018743 243 TYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP-DNITFATMIQA- 320 (351)
Q Consensus 243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~- 320 (351)
.|..+..++.+.|++++|...+++..+..+. +...+..+..+|...|++++|...|+++.+. .| +...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 6788889999999999999999999887655 7888999999999999999999999998864 33 34455555544
Q ss_pred HHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 321 YNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
....+..+++...|.+|....|.++.
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 33456788889999999988877654
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.62 E-value=1.2e-07 Score=64.07 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 018743 219 AGHIEKMEEYFKKMKHRG--MKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMG 296 (351)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 296 (351)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|...+++..+..+. +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 567777777777777653 1334556777777777778888888877777776655 5667777777777778888887
Q ss_pred HHHHHHHhc
Q 018743 297 ELFLTMKER 305 (351)
Q Consensus 297 ~~~~~~~~~ 305 (351)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777654
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.61 E-value=3.8e-06 Score=57.51 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=47.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHH
Q 018743 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTV---VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN---SITYCSLVSA 250 (351)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 250 (351)
+...+...|++++|...|+.+....+. +. ..+..+..++...|++++|...+++..+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 344455555666666655555543222 11 344445555555566666666555555542 222 3445555555
Q ss_pred HHhcCCHhHHHHHHHHhhhc
Q 018743 251 YSKAGLIMKVDSILRQVENS 270 (351)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~~ 270 (351)
+...|++++|...|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55556666666655555544
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.58 E-value=1.5e-06 Score=73.81 Aligned_cols=87 Identities=10% Similarity=-0.044 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321 (351)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (351)
..|..+..++.+.|++++|+..++++.+..+. +...|..+..+|...|++++|+..|+++.+.. +-+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44555555555555555555555555555443 45555555555555556666655555555431 12334445555555
Q ss_pred HHcCCHHHH
Q 018743 322 NALGMTEAA 330 (351)
Q Consensus 322 ~~~g~~~~A 330 (351)
.+.|+.++|
T Consensus 396 ~~~~~~~~a 404 (457)
T 1kt0_A 396 KKAKEHNER 404 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.56 E-value=2.7e-07 Score=62.32 Aligned_cols=86 Identities=12% Similarity=-0.035 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHhhccCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHH
Q 018743 43 GLLDEAFSTINDMKSVSD-CKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMES 121 (351)
Q Consensus 43 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 121 (351)
|++++|+..|++..+... .+.+...+..+..++...|++++|...+++..+.. |.+..++..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555555444100 01123344444445555555555555555554443 2344445555555555555555555
Q ss_pred HHHHHHhc
Q 018743 122 SFSAMVES 129 (351)
Q Consensus 122 ~~~~~~~~ 129 (351)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.56 E-value=2.1e-06 Score=70.69 Aligned_cols=122 Identities=9% Similarity=-0.040 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHR---------------GMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 273 (351)
+..+...+.+.|++++|+..|++.++. .-+.+...|..+..++.+.|++++|+..++++.+..+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 445555666666666666666665541 11234567888888899999999999999998887655
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 018743 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQN 332 (351)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 332 (351)
+...+..+..+|...|++++|++.|+++.+.. +.+...+..+..++...++.+++.+
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888999999999999999999988762 3356677777777777777776643
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.55 E-value=3.7e-06 Score=60.36 Aligned_cols=102 Identities=12% Similarity=0.039 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------C---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 171 IQTLNILTKSYGRAGMYDKMRSVMDFMQKR--------F---------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233 (351)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (351)
...+......+.+.|++++|...|...... . .+.+...|..+..++.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777888889999999999999887664 0 01134677888888999999999999999988
Q ss_pred HcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743 234 HRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273 (351)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 273 (351)
+.. +.+...|..+..++...|++++|...|+...+..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 875 557788889999999999999999999998887544
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.54 E-value=2.3e-06 Score=61.09 Aligned_cols=132 Identities=14% Similarity=0.014 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCc-cHH
Q 018743 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFF-PT----VVTYNIVIETFGKAGHIEKMEEYFKKMKHR----GMKP-NSI 242 (351)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 242 (351)
++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555555555555555554332100 01 134556666677777777777777765542 1111 134
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhhcC----C-ccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 243 TYCSLVSAYSKAGLIMKVDSILRQVENSD----V-ILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 243 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
.+..+...+...|++++|...+++..+.. . ......+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56667777778888888888877765321 1 11234567778888888999999888888764
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.53 E-value=3.4e-06 Score=71.66 Aligned_cols=130 Identities=10% Similarity=-0.017 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 018743 172 QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT--------------VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM 237 (351)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 237 (351)
..+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..+++.++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 3455555666666666666666666555322211 5678888888999999999999999988875
Q ss_pred CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 018743 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGE-LFLTMK 303 (351)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 303 (351)
+.+...+..+..+|...|++++|...|+++.+..+. +...+..+..++.+.++.+++.+ ++..|.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788888999999999999999999998887665 66778888888888888877764 444444
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.48 E-value=3.2e-06 Score=69.57 Aligned_cols=121 Identities=8% Similarity=-0.050 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Q 018743 67 TYSILIKSCTKFHRFDLIEKILAEMSYL---------------GIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGG 131 (351)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 131 (351)
.+..+...+.+.|++++|...|++..+. --+.+..+|..+..+|.+.|++++|+..+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 3555556666677777777777666541 002234455555666666666666666666665542
Q ss_pred CCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018743 132 CHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKM 190 (351)
Q Consensus 132 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (351)
+.+...+..+..++...|++++|++.|++..+.. +.+...+..+..++...++.+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666666666655433 22344444444444444444433
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=2.3e-05 Score=68.28 Aligned_cols=156 Identities=7% Similarity=-0.054 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-
Q 018743 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH----------IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG- 255 (351)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 255 (351)
.++|.+.++.+...++. +...|+.--.++...|+ ++++++.++.+.+.. +-+..+|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34556666666555333 44445554444444444 667777777776654 445666666666666666
Q ss_pred -CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---------
Q 018743 256 -LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAG-DVEKMGELFLTMKERHCVPDNITFATMIQAYNAL--------- 324 (351)
Q Consensus 256 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 324 (351)
+++++...++++.+.++. +..+|+.-..++.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 557777777777776665 6666766666666666 6777777777776653 23566666666555553
Q ss_pred -----CCHHHHHHHHHHHHHhcccCCC
Q 018743 325 -----GMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 325 -----g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
+.++++++.+++++..+|....
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 4568888888888887776543
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.43 E-value=1.7e-06 Score=70.36 Aligned_cols=149 Identities=11% Similarity=0.062 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIID 108 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 108 (351)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ ....|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence 456777788888889999999988887763 344321 11222333322211 1136677777
Q ss_pred HHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCH
Q 018743 109 GYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKS-YGRAGMY 187 (351)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 187 (351)
+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+... ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888877763 4566677777788888888888888887776543 2233444444444 2334556
Q ss_pred HHHHHHHHHHHHc
Q 018743 188 DKMRSVMDFMQKR 200 (351)
Q Consensus 188 ~~a~~~~~~~~~~ 200 (351)
+.+...|..+...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 6777777776554
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.43 E-value=7.4e-05 Score=65.09 Aligned_cols=173 Identities=6% Similarity=-0.128 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-
Q 018743 152 IEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGM----------YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG- 220 (351)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 220 (351)
.++|++.++.+.... +.+...|+.--.++...|+ ++++.+.++.+.+..++ +..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 345666666666544 3344455555555555555 77788888887776554 6777777777777777
Q ss_pred -CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC-CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc---------
Q 018743 221 -HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG-LIMKVDSILRQVENSDVILDTPFFNCIISAYGQA--------- 289 (351)
Q Consensus 221 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 289 (351)
+++++++.++++.+.. +-+...|+.-...+...| .++++.+.++++.+.++. +...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6688888888888875 457777777777777777 788888888888887776 777777777666653
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 018743 290 -----GDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEA 329 (351)
Q Consensus 290 -----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 329 (351)
+.++++++.+++++... +-|...|..+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788999999888753 3356677777666666666443
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.38 E-value=2.9e-05 Score=53.95 Aligned_cols=110 Identities=12% Similarity=0.002 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh----cCCHHHHH
Q 018743 221 HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ----AGDVEKMG 296 (351)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 296 (351)
++++|...|++..+.| .|+.. |...|...+.+++|...|++..+.+ ++..+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555544 22222 4444444445555555555555443 34445555555554 45555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Q 018743 297 ELFLTMKERHCVPDNITFATMIQAYNA----LGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 297 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 341 (351)
+.|++..+.| ++..+..|...|.. .++.++|..++++..+.+
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 34445555555555 555556665555555543
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.38 E-value=3.5e-06 Score=56.48 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 224 KMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 303 (351)
.|+..+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777777654 456777888888888888888888888888877654 56777888888888888888888888877
Q ss_pred hc
Q 018743 304 ER 305 (351)
Q Consensus 304 ~~ 305 (351)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.32 E-value=1.9e-05 Score=55.46 Aligned_cols=94 Identities=9% Similarity=-0.035 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------c-----HHHHHHHHHHHHhcCCHhHHHHHHHHhhhc-------C
Q 018743 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKP------N-----SITYCSLVSAYSKAGLIMKVDSILRQVENS-------D 271 (351)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 271 (351)
......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++..+. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334445555666666666666655542110 1 237777788888888888888888887776 5
Q ss_pred CccCHHhH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 272 VILDTPFF----NCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 272 ~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
+. +...| .....++...|++++|+..|++..+
T Consensus 95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 54 55677 7888888999999999999998875
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.29 E-value=9.7e-06 Score=68.94 Aligned_cols=127 Identities=10% Similarity=-0.081 Sum_probs=89.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---C---Cc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhh-----cCCc-c-CHHhHH
Q 018743 215 TFGKAGHIEKMEEYFKKMKHRG---M---KP-NSITYCSLVSAYSKAGLIMKVDSILRQVEN-----SDVI-L-DTPFFN 280 (351)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~~~---~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~ 280 (351)
.+...|++++|..++++.++.. + .| ...+++.|..+|...|++++|+.++++..+ .|.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557888999988888876431 1 12 345788888889999999999888887653 2221 1 234678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 018743 281 CIISAYGQAGDVEKMGELFLTMKER-----HC-VPD-NITFATMIQAYNALGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 281 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 341 (351)
.|...|...|++++|..++++..+. |. .|+ ..+...+..++...+++++|..++.++.+..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999988887632 21 122 2345566677778888999999998887644
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.27 E-value=5.4e-05 Score=52.50 Aligned_cols=111 Identities=7% Similarity=-0.130 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHh----cCCHH
Q 018743 7 CKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTK----FHRFD 82 (351)
Q Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 82 (351)
.+++++|...|++..+.|.. ... +...|...+.+++|+++|++..+ .-+...+..+...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~----~g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACE----LNSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHcCCCCCccHH
Confidence 35667777777777766522 322 55666666667777777777665 2345556666666665 56777
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHhh----cCChHHHHHHHHHHHhc
Q 018743 83 LIEKILAEMSYLGIECSAVTYNTIIDGYGK----AKKFEEMESSFSAMVES 129 (351)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 129 (351)
+|..+|++..+.| +...+..|...|.. .+++++|...|++..+.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 7777777766654 45556666666666 56666777766666554
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.21 E-value=2e-05 Score=67.06 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=95.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC---C---CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCc-cHHHHH
Q 018743 180 SYGRAGMYDKMRSVMDFMQKRF---F---FP-TVVTYNIVIETFGKAGHIEKMEEYFKKMKHR-----G-MKP-NSITYC 245 (351)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~---~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~ 245 (351)
.+...|++++|..++++..+.. + .| ...+++.+..+|...|++++|..++++.++. | -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999999998875521 1 12 2467899999999999999999999987632 2 122 346789
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhh-----cCCc-c-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 246 SLVSAYSKAGLIMKVDSILRQVEN-----SDVI-L-DTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 246 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
.|...|...|++++|+.++++..+ .|.. | ...+.+.+..++...+.+++|..+|.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988653 2322 1 2334566777888899999999999998753
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=4.6e-06 Score=55.32 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 269 (351)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 22333444444444444444444444444443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.19 E-value=9.1e-06 Score=54.42 Aligned_cols=76 Identities=13% Similarity=0.085 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 13 ASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEM 91 (351)
Q Consensus 13 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 91 (351)
|+..|+...+..+. +...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444433322 34444444444444444444444444444321 122333444444444444444444444443
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.19 E-value=8.8e-06 Score=57.02 Aligned_cols=97 Identities=10% Similarity=0.098 Sum_probs=63.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH----------hHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI----------MKVDSILRQVENSDVILDTPFFNCIISAYGQ 288 (351)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (351)
.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|++..+.++. +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 345666666666666654 44566666666666655543 4777777777777665 66677777777776
Q ss_pred cC-----------CHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 289 AG-----------DVEKMGELFLTMKERHCVPDNITFATMIQ 319 (351)
Q Consensus 289 ~g-----------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 319 (351)
.| ++++|++.|+++++. .|+...|...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 54 788888888888874 666555544433
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.3e-05 Score=53.16 Aligned_cols=94 Identities=10% Similarity=-0.054 Sum_probs=75.4
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------H
Q 018743 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-------N 311 (351)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-------~ 311 (351)
++...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|++.+++..+. .|+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence 35667888899999999999999999999988765 7888999999999999999999999999975 444 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 018743 312 ITFATMIQAYNALGMTEAAQNLEN 335 (351)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~ 335 (351)
..+..+..++...|+.+.|...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHH
Confidence 456666667777776666654443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.15 E-value=5.4e-05 Score=47.90 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018743 241 SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQA 320 (351)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 320 (351)
...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344555555566666666666666665554433 45555566666666666666666666665542 2234444444444
Q ss_pred HHH
Q 018743 321 YNA 323 (351)
Q Consensus 321 ~~~ 323 (351)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.13 E-value=8.7e-06 Score=57.03 Aligned_cols=91 Identities=8% Similarity=0.012 Sum_probs=77.4
Q ss_pred HhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743 252 SKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV----------EKMGELFLTMKERHCVPDNITFATMIQAY 321 (351)
Q Consensus 252 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (351)
.+.+.+++|.+.++...+..+. +...|..+..++...+++ ++|+..|++.++.. +-+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3556789999999999998877 889999899999988775 59999999999863 23577899999999
Q ss_pred HHcC-----------CHHHHHHHHHHHHHhcccC
Q 018743 322 NALG-----------MTEAAQNLENKMIAMKENS 344 (351)
Q Consensus 322 ~~~g-----------~~~~A~~~~~~~~~~~~~~ 344 (351)
...| ++++|+..|+++++.+|..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 9875 8999999999999998875
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.13 E-value=6.5e-05 Score=47.50 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=46.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285 (351)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (351)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+..+. +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3445555556666666666666666666543 334555666666666666666666666666655433 44455555444
Q ss_pred HHh
Q 018743 286 YGQ 288 (351)
Q Consensus 286 ~~~ 288 (351)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.08 E-value=2.8e-05 Score=50.50 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=51.0
Q ss_pred CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 238 KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
+-+...+..+...+...|++++|...|+++.+..+. +...|..+..+|...|++++|++.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 335667777888888888888888888888877655 566777888888888888888888887765
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.04 E-value=2.3e-05 Score=50.98 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 018743 65 VYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMV 127 (351)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 127 (351)
...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|.+.|++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444445555555555555444443 2234444445555555555555555554443
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.97 E-value=3.9e-05 Score=49.58 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=58.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCCccCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHc
Q 018743 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTP-FFNCIISAYGQAGDVEKMGELFLTMKERHCVPD-NITFATMIQAYNAL 324 (351)
Q Consensus 247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 324 (351)
....+...|++++|...++++.+..+. +.. .+..+..++...|++++|.+.|++..+.. |+ ...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--PDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHH--------
Confidence 344566677777777777777766544 556 77777777777888888888888777652 22 222211
Q ss_pred CCHHHHHHHHHHHHHhcccCCC
Q 018743 325 GMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 325 g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
+.+.++...+++.....|.++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHHhccCccccc
Confidence 5566777777777666665543
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.80 E-value=0.0079 Score=48.57 Aligned_cols=73 Identities=11% Similarity=0.032 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHH
Q 018743 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITY 244 (351)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 244 (351)
+.+..++..+...+...|++++|...+++....+ |+...|..+...+...|++++|.+.+.+.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 4455555555555555566666666666666653 45555555556666666666666666666654 3444443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.75 E-value=0.0015 Score=52.72 Aligned_cols=65 Identities=9% Similarity=-0.032 Sum_probs=35.7
Q ss_pred CCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743 97 ECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL 164 (351)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (351)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3445555555444444566666666666655542 4444555555555556666666666655554
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.66 E-value=0.00064 Score=47.12 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC---CHhHHHHHHHHhhhcC-CccCHHhHHHHHHHHHhcCCHHHHHH
Q 018743 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG---LIMKVDSILRQVENSD-VILDTPFFNCIISAYGQAGDVEKMGE 297 (351)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 297 (351)
...+.+-|.+..+.+ +++..+...+..++++.+ +.+++..+++.+.+.+ +.-+...+-.+.-++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555554444 355566666666666655 4446666666666554 21123444455555666666666666
Q ss_pred HHHHHHhc
Q 018743 298 LFLTMKER 305 (351)
Q Consensus 298 ~~~~~~~~ 305 (351)
.++.+.+.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66666653
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.58 E-value=0.0006 Score=43.82 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=55.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccCCC
Q 018743 282 IISAYGQAGDVEKMGELFLTMKERHCVPDNI-TFATMIQAYNALGMTEAAQNLENKMIAMKENSGK 346 (351)
Q Consensus 282 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 346 (351)
....+...|++++|++.|+++.+.. +.+.. .+..+..++...|++++|...++++++.+|....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 4567888999999999999999863 33566 8889999999999999999999999999887654
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.56 E-value=0.00034 Score=58.53 Aligned_cols=88 Identities=11% Similarity=-0.054 Sum_probs=62.0
Q ss_pred hcCCHhHHHHHHHHhhh---cCCcc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHHHH
Q 018743 253 KAGLIMKVDSILRQVEN---SDVIL----DTPFFNCIISAYGQAGDVEKMGELFLTMKER-----H-CVPD-NITFATMI 318 (351)
Q Consensus 253 ~~g~~~~a~~~~~~~~~---~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~l~ 318 (351)
..|++++|+.++++..+ .-+.| ...+++.|..+|...|++++|+.++++..+. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35778888888877553 11112 2356788888888888888888888887632 2 1233 34678888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 018743 319 QAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
..|...|++++|..+++++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 8888999999998888888654
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.53 E-value=0.00074 Score=56.57 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=62.0
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcC---Ccc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHH
Q 018743 248 VSAYSKAGLIMKVDSILRQVENSD---VIL----DTPFFNCIISAYGQAGDVEKMGELFLTMKER-----H-CVPD-NIT 313 (351)
Q Consensus 248 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~ 313 (351)
+..+...|++++|+.++++..+.. ..| ...+++.++.+|...|++++|+.+++++.+. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888887765321 111 2346777788888888888888888876532 1 1222 346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743 314 FATMIQAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
++.|...|...|++++|..+++++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 777888888888888888888877653
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.48 E-value=0.0015 Score=41.47 Aligned_cols=67 Identities=6% Similarity=-0.021 Sum_probs=43.4
Q ss_pred CccHHHHHHHHHHHHhcCC---HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 238 KPNSITYCSLVSAYSKAGL---IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
+.+...+..+..++...++ .++|..++++..+.++. ++.....+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455566666666654443 56677777777766655 6666666667777777777777777777664
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.45 E-value=0.00048 Score=57.65 Aligned_cols=60 Identities=8% Similarity=-0.061 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCCHhHHHHHHHHHhhcCChHHHHHHHHHH
Q 018743 67 TYSILIKSCTKFHRFDLIEKILAEMSYL-----G--IECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126 (351)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 126 (351)
+++.+..+|...|++++|+.++++.... | .+....+++.|...|...|++++|+.++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3444445555555555555544444321 1 1112233444444444444444444444443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.43 E-value=0.0012 Score=55.38 Aligned_cols=87 Identities=10% Similarity=0.024 Sum_probs=41.5
Q ss_pred HhcCCHHHHHHHHHHHHHcC---CC----CCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc-----CCCCCC-HhHHHHH
Q 018743 76 TKFHRFDLIEKILAEMSYLG---IE----CSAVTYNTIIDGYGKAKKFEEMESSFSAMVES-----GGCHPD-IFTLNSM 142 (351)
Q Consensus 76 ~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~l 142 (351)
...|++++|+.++++..+.. +. ....+++.+...|...|++++|+.++++.++. +...|+ ..+++.+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 34455555555555544320 11 12334555555555555555555555544321 111222 2245555
Q ss_pred HHHHhcCCCHHHHHHHHHHH
Q 018743 143 ISAYGNSGNIEKMEKWYNEF 162 (351)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~ 162 (351)
...|...|++++|..++++.
T Consensus 378 a~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHH
Confidence 55566666666665555554
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.42 E-value=0.002 Score=41.95 Aligned_cols=67 Identities=15% Similarity=0.021 Sum_probs=50.3
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC------CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 239 PNSITYCSLVSAYSKAGLIMKVDSILRQVENSD------VILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
.+......+...+...|++..|...++...+.. ..+...++..+..++.+.|+++.|...++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355566778888888888888888888866531 1234667788888888888888888888888764
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.36 E-value=0.03 Score=43.45 Aligned_cols=88 Identities=8% Similarity=-0.039 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc-----CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHH
Q 018743 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGN-----SGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRA-GMYDK 189 (351)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 189 (351)
...|...+++.++...--.+...|..+...|.+ .|+.++|.+.|++.++.+..-+..++......++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 345566666665542111124456666666666 366666666666666643212355555566666653 66666
Q ss_pred HHHHHHHHHHcCCC
Q 018743 190 MRSVMDFMQKRFFF 203 (351)
Q Consensus 190 a~~~~~~~~~~~~~ 203 (351)
+.+.+++.....+.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666665444
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.35 E-value=0.0065 Score=38.44 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 64 DVYTYSILIKSCTKFHR---FDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 64 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
|...+..+..++...++ .++|..++++..+.. |-+......+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44444444444432222 455555555555544 334455555555555555555555555555544
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.29 E-value=0.0052 Score=42.57 Aligned_cols=84 Identities=10% Similarity=-0.070 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHhcCCHhHHH
Q 018743 187 YDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG---HIEKMEEYFKKMKHRGMKP--NSITYCSLVSAYSKAGLIMKVD 261 (351)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 261 (351)
...+.+.|.+....+. ++..+...+..++++.+ +.++++.++++..+.+ .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3344444554444333 35555555555666655 4446666666666553 23 2334445555556666666666
Q ss_pred HHHHHhhhcCC
Q 018743 262 SILRQVENSDV 272 (351)
Q Consensus 262 ~~~~~~~~~~~ 272 (351)
+.++.+.+..|
T Consensus 92 ~y~~~lL~ieP 102 (152)
T 1pc2_A 92 KYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCC
Confidence 66666665543
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.24 E-value=0.0071 Score=41.40 Aligned_cols=113 Identities=10% Similarity=0.040 Sum_probs=72.5
Q ss_pred CCHHhHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCccHH-HHHHHHHH------HHhcCCHhHHHHHHHHhhhc
Q 018743 204 PTVVTYNIVIETFGKAGHI------EKMEEYFKKMKHRGMKPNSI-TYCSLVSA------YSKAGLIMKVDSILRQVENS 270 (351)
Q Consensus 204 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~a~~~~~~~~~~ 270 (351)
-|..+|-..+....+.|++ ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4677888888888878888 8888888887775 466431 22222221 22346777788888777655
Q ss_pred CCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 271 DVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319 (351)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 319 (351)
.-.. ..+|....+.-.+.|+++.|.+++.+.+..+.. +...+...++
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 3333 666666667777778888888888887776544 3344444443
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.15 E-value=0.022 Score=52.18 Aligned_cols=152 Identities=9% Similarity=0.038 Sum_probs=83.2
Q ss_pred HHhccCChHHHHH-HHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCCh
Q 018743 38 AYGQSGLLDEAFS-TINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKF 116 (351)
Q Consensus 38 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (351)
.....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+.- . .-.......|++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCH
Confidence 3345677777765 43211 11222366666677777777777655311 1 112334567888
Q ss_pred HHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018743 117 EEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDF 196 (351)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (351)
++|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. +..+...+...|+.+...++-+.
T Consensus 669 ~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 669 TLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 8887775433 3556788888888888888888888877643 23344444445555554444443
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743 197 MQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFK 230 (351)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 230 (351)
....|. ++....++.+.|++++|++++.
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 333221 1222333444455555554443
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.11 E-value=0.054 Score=49.59 Aligned_cols=126 Identities=9% Similarity=0.007 Sum_probs=70.4
Q ss_pred HHhcCCHHHHHH-HHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHH
Q 018743 75 CTKFHRFDLIEK-ILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIE 153 (351)
Q Consensus 75 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (351)
....+++++|.+ ++..+ + +......++..+.+.|.+++|+++.+.. . .-.......|+++
T Consensus 609 ~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQ--------D-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------H-----HHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCc--------c-----hheehhhhcCCHH
Confidence 345677777765 44211 1 1222256666677777777777654211 0 1123345567777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 154 KMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233 (351)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (351)
.|.++.+. ..+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...++.+...
T Consensus 670 ~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 77776543 24566777777777777777777777776543 2334444444555555444444433
Q ss_pred H
Q 018743 234 H 234 (351)
Q Consensus 234 ~ 234 (351)
.
T Consensus 735 ~ 735 (814)
T 3mkq_A 735 T 735 (814)
T ss_dssp H
T ss_pred H
Confidence 3
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.03 E-value=0.0062 Score=40.56 Aligned_cols=82 Identities=11% Similarity=0.027 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhH---HHHHHHHhhhcC-CccCHHhHHHHHHHHHhcCCHHHHHH
Q 018743 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMK---VDSILRQVENSD-VILDTPFFNCIISAYGQAGDVEKMGE 297 (351)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 297 (351)
...+.+-|......| .++..+-..+..++.+..+... ++.+++.+.+.+ +.-.....-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444433 3455555555555555544433 555555555443 11122333344445555555555555
Q ss_pred HHHHHHh
Q 018743 298 LFLTMKE 304 (351)
Q Consensus 298 ~~~~~~~ 304 (351)
.++.+.+
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.00 E-value=0.01 Score=38.44 Aligned_cols=67 Identities=7% Similarity=-0.120 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccC-----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVS-----DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL 94 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 94 (351)
+...+..+...+.+.|+++.|..+|+...+.. .-.+....+..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34444555566666666666666665554321 01123344555555555555555555555555544
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.95 E-value=0.03 Score=38.37 Aligned_cols=64 Identities=11% Similarity=0.169 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHH
Q 018743 219 AGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIIS 284 (351)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (351)
.+++++|.++|+.++..+-. -...|....+.-.+.|+...|.+++......++.| ...+...++
T Consensus 73 i~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 36788888888888765323 26677777777778888989999988888887774 344444443
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.92 E-value=0.035 Score=43.08 Aligned_cols=85 Identities=11% Similarity=0.047 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhc-----CCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhc-CCH
Q 018743 222 IEKMEEYFKKMKHRGMKPN---SITYCSLVSAYSKA-----GLIMKVDSILRQVENSDVILDTPFFNCIISAYGQA-GDV 292 (351)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 292 (351)
...|...+++..+. .|+ ...|..+...|... |+.++|.+.|++..+.++.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666677777665 343 45677777777773 88888888888888776543466777777777774 888
Q ss_pred HHHHHHHHHHHhcCCC
Q 018743 293 EKMGELFLTMKERHCV 308 (351)
Q Consensus 293 ~~a~~~~~~~~~~~~~ 308 (351)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888876544
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.1 Score=37.17 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=45.3
Q ss_pred hccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHH
Q 018743 40 GQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEM 119 (351)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 119 (351)
.+.|+++.|.++.+.+. +...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+..
T Consensus 16 L~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34555555555544431 244455555555555555555555554431 22233334444554444
Q ss_pred HHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHH
Q 018743 120 ESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNE 161 (351)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (351)
.++-+....++ -++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE-------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43333332221 133333444445555555555543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.53 E-value=0.037 Score=36.84 Aligned_cols=84 Identities=6% Similarity=-0.073 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 018743 259 KVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEK---MGELFLTMKERHCVP--DNITFATMIQAYNALGMTEAAQNL 333 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 333 (351)
.+.+-+......+. ++..+-..+..++.+..+... ++.+++.+...+ .| .....-.|.-++.+.|++++|++.
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33334443333332 344444455555555554333 555555554432 12 122333444455555555555555
Q ss_pred HHHHHHhcccC
Q 018743 334 ENKMIAMKENS 344 (351)
Q Consensus 334 ~~~~~~~~~~~ 344 (351)
++.+++..|.+
T Consensus 97 ~~~lL~~eP~n 107 (126)
T 1nzn_A 97 VRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHHhCCCC
Confidence 55555555543
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.36 E-value=0.12 Score=34.74 Aligned_cols=141 Identities=13% Similarity=0.018 Sum_probs=78.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHH
Q 018743 75 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK 154 (351)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (351)
..-.|..++..++..+..... +..-||-++.-....-+-+-..++++.+-+.. |. ...|+...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Di----------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DL----------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CG----------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------HhhhcHHH
Confidence 344566777777777766543 45555555555555566666666666653321 21 12333444
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 155 MEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKH 234 (351)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (351)
....+-.+ ..+...+..-+..+...|..++..+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+
T Consensus 80 Vi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 80 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44333332 12334455556666666777776666666433 2345566666666777777777777777777766
Q ss_pred cCCC
Q 018743 235 RGMK 238 (351)
Q Consensus 235 ~~~~ 238 (351)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 6643
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.42 Score=40.20 Aligned_cols=189 Identities=11% Similarity=0.106 Sum_probs=85.4
Q ss_pred CChHHHHHHHHHhhcc----CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHH----Hhhc
Q 018743 43 GLLDEAFSTINDMKSV----SDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYL-GIECSAVTYNTIIDG----YGKA 113 (351)
Q Consensus 43 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~----~~~~ 113 (351)
|+++.|++.+-.+.+. ............++..|...++++...+.+..+.+. |..+.. ...++.. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 6677777766555432 223344556667777777777877776666655433 322221 2222222 2122
Q ss_pred CChHH--HHHHHHHHHhc--CCCCC---CHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHH
Q 018743 114 KKFEE--MESSFSAMVES--GGCHP---DIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKA-D----IQTLNILTKSY 181 (351)
Q Consensus 114 ~~~~~--a~~~~~~~~~~--~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~ 181 (351)
...+. -..+.+..... +.+.. .......|...+...|++.+|.+++..+...-... + ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22211 11111111110 00001 01122344555666666666666666654321111 1 22344455556
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 182 GRAGMYDKMRSVMDFMQK----RFFFPT--VVTYNIVIETFGKAGHIEKMEEYFKKMK 233 (351)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (351)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666666666666655432 111111 1223444445555556655555555543
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.27 E-value=0.095 Score=35.11 Aligned_cols=67 Identities=9% Similarity=-0.042 Sum_probs=31.2
Q ss_pred CccHHHHHHHHHHHHhcCCH---hHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 238 KPNSITYCSLVSAYSKAGLI---MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
.|+..+--.+..++.+..+. .+++.+++.+.+.++.-....+-.+.-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444332 23455555554443222233344444455555555555555555554
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.21 E-value=0.15 Score=34.31 Aligned_cols=68 Identities=15% Similarity=0.048 Sum_probs=51.4
Q ss_pred CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 018743 99 SAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK 168 (351)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (351)
+.......++.+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4556666777788888888888888875443 4677777888888888888888888888888877754
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.2 Score=35.67 Aligned_cols=130 Identities=13% Similarity=0.111 Sum_probs=93.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 018743 178 TKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257 (351)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 257 (351)
.......|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34456789999999987765 3788999999999999999999999987543 34455556678888
Q ss_pred hHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743 258 MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337 (351)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (351)
+...++-+.....+ -++....++...|++++++++|.+.-. .|.. +......|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 87776666655443 255666778889999999999865432 2211 11223467788888888776
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.04 E-value=0.9 Score=41.79 Aligned_cols=155 Identities=9% Similarity=0.045 Sum_probs=63.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhH--HHHHHHHHhcCCCH
Q 018743 75 CTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFT--LNSMISAYGNSGNI 152 (351)
Q Consensus 75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 152 (351)
+...|+-+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+.... .|.... -.++.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCH
Confidence 334555555555555544321 1111112222223334555555555555554321 222111 11223345556666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHH
Q 018743 153 EKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHI-EKMEEYFKK 231 (351)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~ 231 (351)
....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++++.+..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 55555666555421 1222222222223333455554555554444332 23333222222333333332 455555555
Q ss_pred HHH
Q 018743 232 MKH 234 (351)
Q Consensus 232 ~~~ 234 (351)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 543
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.68 Score=38.96 Aligned_cols=260 Identities=10% Similarity=0.023 Sum_probs=151.3
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHH--HHHHHHHHHhcCC
Q 018743 8 KQPEQASLLFEVMLSD-----GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYT--YSILIKSCTKFHR 80 (351)
Q Consensus 8 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 80 (351)
|++++|++.+-.+.+. +...+......++..|...|+++...+.+..+.+.+|..+...+ ...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888887666542 33446788899999999999999998988888776665444332 1222222223333
Q ss_pred HHH--HHHHHHHHHH--cC-CCC---CHhHHHHHHHHHhhcCChHHHHHHHHHHHhcC-CCCCC---HhHHHHHHHHHhc
Q 018743 81 FDL--IEKILAEMSY--LG-IEC---SAVTYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHPD---IFTLNSMISAYGN 148 (351)
Q Consensus 81 ~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~ 148 (351)
.+. -..+.+.+.. .| +-. .......|...+...|++.+|..++..+.... +.... ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 322 1222221111 01 111 22334567889999999999999999986432 22111 2356667888999
Q ss_pred CCCHHHHHHHHHHHHh----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHH----HHHHHH
Q 018743 149 SGNIEKMEKWYNEFNL----MGVKAD--IQTLNILTKSYGRAGMYDKMRSVMDFMQKRF-FFPTVVTYNI----VIETFG 217 (351)
Q Consensus 149 ~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~----l~~~~~ 217 (351)
.+++..|..++.++.. ...+|+ ...+...+..+...+++.+|-..|.++.... ...+...+.. ++.+..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999988642 222222 2345667778888899999988887765421 1112222221 111222
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhc--CCHhHHHHHHHHh
Q 018743 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKA--GLIMKVDSILRQV 267 (351)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 267 (351)
-.+..+.-..++........-++...+..++.+|... .+++.....|...
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 2222222222333333332345667788888888754 3455555555443
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.84 E-value=0.17 Score=31.86 Aligned_cols=63 Identities=11% Similarity=0.211 Sum_probs=46.8
Q ss_pred CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319 (351)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 319 (351)
|.-+..+-++.+...+..|++.+..+.+++|.+.+++..|+++|+..+.. +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 45567777777788888888888888888888888888888888887754 3334455666654
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.78 E-value=0.26 Score=33.50 Aligned_cols=67 Identities=9% Similarity=-0.042 Sum_probs=33.0
Q ss_pred CccHHHHHHHHHHHHhcCCH---hHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 238 KPNSITYCSLVSAYSKAGLI---MKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
.|+..+-..+..++.+..+. .+++.+++.+.+.++.-.....-.+.-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34445544455555554432 34555555555443322233333444455555666666555555555
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.62 E-value=0.39 Score=39.58 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCCCHHHHH
Q 018743 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMK-----ERHCVPDNITFA 315 (351)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~ 315 (351)
..++..+...|+++++...+..+....+. +...+..++.++.+.|+..+|++.|+++. +.|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34455555666666666666666555443 55666666666666666666666666554 236666655433
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.25 Score=44.29 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHcCCCccHHHH-HHHHHHHHhcCC-HhHHHHHHHHhhhc------CCc-cCH---
Q 018743 210 NIVIETFGKAGH-IEKMEEYFKKMKHRGMKPNSITY-CSLVSAYSKAGL-IMKVDSILRQVENS------DVI-LDT--- 276 (351)
Q Consensus 210 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~-~~~a~~~~~~~~~~------~~~-~~~--- 276 (351)
..++..+...++ .+.|..+++++.... +.....+ ..++..+...++ --+|.+++.+..+. ... .+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~-p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD-PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 344444545555 577888888887763 2222222 233333222221 22344444443211 001 011
Q ss_pred -------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 018743 277 -------PFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKM 337 (351)
Q Consensus 277 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (351)
.....=...+...|+++-|+++-++.... .+.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222244567789999999999998875 3445779999999999999999998888776
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=95.29 E-value=0.38 Score=32.18 Aligned_cols=63 Identities=11% Similarity=0.211 Sum_probs=47.7
Q ss_pred CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319 (351)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 319 (351)
|.-+..+-++.+...++.|++.+..+.+++|-+.+++..|+++|+..+.. +.+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 45566777777778888888888888888888888888888888888765 3444556776654
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.38 Score=43.14 Aligned_cols=54 Identities=7% Similarity=-0.114 Sum_probs=36.6
Q ss_pred HHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 248 VSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302 (351)
Q Consensus 248 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 302 (351)
...|...|+++.|+.+-++.....+. +-.+|..|..+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33455667777777777777666544 5667777777777777777777666654
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=94.88 E-value=0.39 Score=30.13 Aligned_cols=78 Identities=18% Similarity=0.134 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 018743 9 QPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKIL 88 (351)
Q Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 88 (351)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|..|-. .+.|-.+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45566666666555432 11111112334556666666666555433 466666655433 2555556666666
Q ss_pred HHHHHcC
Q 018743 89 AEMSYLG 95 (351)
Q Consensus 89 ~~~~~~~ 95 (351)
.++..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5555555
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.83 E-value=2.4 Score=40.62 Aligned_cols=183 Identities=12% Similarity=0.059 Sum_probs=96.4
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-----------------
Q 018743 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVK----------------- 168 (351)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------- 168 (351)
++..+...+..+-+.++..- ++.+...--.+..++...|++++|.++|.+... |+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 34445555555555443332 233444444556777888888888888876421 110
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 018743 169 ------ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV----VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMK 238 (351)
Q Consensus 169 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 238 (351)
.-..-|..++..+.+.+.++.+.+.-....+.....+. ..|..+...+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 01123556666677777777777666555443211111 2466677777777777777777766655432
Q ss_pred ccHHHHHHHHHHHHhcCCH------------hHHHHHHHHhh-hc-CCccCHHhHHHHHHHHHhcCCHHHHHH
Q 018743 239 PNSITYCSLVSAYSKAGLI------------MKVDSILRQVE-NS-DVILDTPFFNCIISAYGQAGDVEKMGE 297 (351)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~------------~~a~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 297 (351)
-...+..|+..++..|.. ++..+++..-. .. .+...+..|..|-.-+...|++..|-.
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~ 1041 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAA 1041 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHH
Confidence 234455566555554443 33333333211 11 112122345555555666666655544
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.76 E-value=2.9 Score=40.12 Aligned_cols=193 Identities=6% Similarity=-0.037 Sum_probs=121.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C----------------
Q 018743 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR----F---------------- 201 (351)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---------------- 201 (351)
++..+...+..+-+.++... .+.+...--.+..++...|++++|...|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555666555554433 2334444456778899999999999999764211 0
Q ss_pred --CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH----HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccC
Q 018743 202 --FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS----ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD 275 (351)
Q Consensus 202 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 275 (351)
...-..-|..++..+.+.+.++.+.++-....+...+-+. ..|..+.+.+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 0011234677888888999999999888877764322221 2578899999999999999999987766543 3
Q ss_pred HHhHHHHHHHHHhcCCHHHH------------HHHHHHHH-hc-CCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 018743 276 TPFFNCIISAYGQAGDVEKM------------GELFLTMK-ER-HCVPDNITFATMIQAYNALGMTEAA-QNLENKMIAM 340 (351)
Q Consensus 276 ~~~~~~l~~~~~~~g~~~~a------------~~~~~~~~-~~-~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 340 (351)
...+..|+..++..|..+.- .+++..-. .. .....+.-|..|-.-+...|++-.| .-+|+.+.+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 56777888877777665443 33333221 11 1122233456666666677776544 5666666655
Q ss_pred c
Q 018743 341 K 341 (351)
Q Consensus 341 ~ 341 (351)
+
T Consensus 1051 ~ 1051 (1139)
T 4fhn_B 1051 I 1051 (1139)
T ss_dssp H
T ss_pred h
Confidence 4
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=94.67 E-value=0.36 Score=30.22 Aligned_cols=86 Identities=14% Similarity=0.093 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 018743 8 KQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87 (351)
Q Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 87 (351)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+. .||...|..|-. .+.|-.+++...
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 345666666666665432 11111122335566777777766554433 566666655543 356666666666
Q ss_pred HHHHHHcCCCCCHhHH
Q 018743 88 LAEMSYLGIECSAVTY 103 (351)
Q Consensus 88 ~~~~~~~~~~~~~~~~ 103 (351)
+.++..+| .|....|
T Consensus 91 L~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTCS-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 66666655 3343333
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.54 E-value=2.9 Score=38.62 Aligned_cols=260 Identities=8% Similarity=-0.065 Sum_probs=136.9
Q ss_pred HhccCChHHHHHHHHHhhccC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHhHHHHHHHHH
Q 018743 39 YGQSGLLDEAFSTINDMKSVS-DCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGI-------ECSAVTYNTIIDGY 110 (351)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 110 (351)
....|+.++++.++....... .-.+....=..+.-+....|..+++..++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677777777776655311 1112222223333345566665677777776654321 01122222233333
Q ss_pred hhcCC-hHHHHHHHHHHHhcCCCCCCHh--HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018743 111 GKAKK-FEEMESSFSAMVESGGCHPDIF--TLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMY 187 (351)
Q Consensus 111 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (351)
+-.|. -+++.+.+..+.... .+... +-.++...+.-.|+.+....++..+.+.. ..+..-+..+.-++...|+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 33332 245566666665532 11111 12233444567788888888887766532 22222233333444577888
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHH
Q 018743 188 DKMRSVMDFMQKRFFFPTVVTYN--IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILR 265 (351)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 265 (351)
+.+..+++.+... ..|....-. .+.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888887764 222222222 23345677888877777888887652 3333333344444555677777777777
Q ss_pred HhhhcCCccCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 018743 266 QVENSDVILDTPFFNCIISAYGQAGDV-EKMGELFLTMKE 304 (351)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 304 (351)
.+.+.+ .|....-..+.-+....|.. .++++++..+..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666543 33444333444444444443 577788888764
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.44 E-value=0.39 Score=33.68 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=41.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhccCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 31 VYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV-------YTYSILIKSCTKFHRFDLIEKILAEMS 92 (351)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 92 (351)
++-.-++.+...|.++.|+-+.+.+....+..|+. .++..+.+++...+++..|...|++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444667778888888887777655433223331 245666777888888888888888864
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.13 E-value=0.4 Score=39.52 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhh-----hcCCccCHHh
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVE-----NSDVILDTPF 278 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~ 278 (351)
...++..+...|+++++...+..+.... +.+...+..++.++...|+..+|.+.|+... +.|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445667777888888888888777664 6677788888888888888888888887754 3577776655
No 252
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.75 E-value=6.7e-05 Score=61.96 Aligned_cols=245 Identities=12% Similarity=0.118 Sum_probs=157.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 018743 28 SVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTII 107 (351)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 107 (351)
.+.+|..|..+....++..+|++.|-+.. |+..|..++.++.+.|.++.-.+++...++.. .++.+=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS-------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC-------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 46788999999999999999988774332 33348889999999999999999988776653 3445556788
Q ss_pred HHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhc--------------------CC
Q 018743 108 DGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLM--------------------GV 167 (351)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~ 167 (351)
-+|++.++..+-.+++. .|+..-...+..-|...|.++.|.-+|..+... .-
T Consensus 124 ~ayAk~~rL~elEefl~--------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHHTSCSSSTTTSTTS--------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHhhCcHHHHHHHHc--------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988766333221 234444455566666666666665555443211 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHH
Q 018743 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSL 247 (351)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (351)
..++.||..+-.+|...+++.-|.-.--.+.-. ......++..|-..|.+++.+.+++.-.... +.....|+.|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 345677888888888888877665543333322 1122345667788888888888888776443 5577888888
Q ss_pred HHHHHhcCCHhHHHHHHHHhhh-cCCc------cCHHhHHHHHHHHHhcCCHHHHH
Q 018743 248 VSAYSKAGLIMKVDSILRQVEN-SDVI------LDTPFFNCIISAYGQAGDVEKMG 296 (351)
Q Consensus 248 ~~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~~~~~l~~~~~~~g~~~~a~ 296 (351)
.-.|++- ++++..+.++..-. .+++ -....|..+.-.|.+..+++.|.
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 8888775 45555554443221 1111 02334666666777777776554
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.37 E-value=1.2 Score=34.16 Aligned_cols=121 Identities=9% Similarity=0.059 Sum_probs=73.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCcc--CHHhHHHHHHHHHhcCC
Q 018743 214 ETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVIL--DTPFFNCIISAYGQAGD 291 (351)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 291 (351)
....+.|++++++.....-++.. |-|...-..+++.++-.|++++|.+-++...+..+.. ....|..+|++-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 34567788888888888777764 5677777788888888888888888888777664431 122333333321
Q ss_pred HHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhcccCC
Q 018743 292 VEKMGELFLTMKERHCV-----PDNITFATMIQAYN--ALGMTEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 292 ~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~ 345 (351)
..=.+...-+-. ....-...++.+.. ..|+.++|.++-+++.+..|..+
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 111122221111 12223345555544 46888888888888877765543
No 254
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.22 E-value=1.8e-06 Score=70.97 Aligned_cols=242 Identities=11% Similarity=0.102 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHH
Q 018743 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISA 145 (351)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (351)
..|..|..+....+...+|++-|-+ .-|+..|..++....+.|.+++-.+.+.-.++. ..++..=+.|+-+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~a 125 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFA 125 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHH
Confidence 3488888888888877777665522 236677889999999999999999988877554 3455566789999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------------CCCC
Q 018743 146 YGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRF--------------------FFPT 205 (351)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~ 205 (351)
|++.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+.... -..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999998776544332 3555555667777777777777776665443211 1236
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743 206 VVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285 (351)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (351)
+.||..+-.+|...+.+.-|.-.--.++- .| .-...++..|-..|.+++.+.+++...... .....+|+.|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 67888888888888877766544333332 11 123456777888899999888888877543 2367788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743 286 YGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (351)
|++- +.++..+.++..-. + .-.-.++++|.+..-|.++.-++..
T Consensus 273 YsKY-~PeKlmEHlklf~s---r---iNipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWS---R---VNIPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSS---S---SCCTTTHHHHTTTTCHHHHHHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHH---h---ccHHHHHHHHHHHhhHHHHHHHHhc
Confidence 8876 44444444433221 1 1123478899999999998877653
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.15 E-value=4.2 Score=35.79 Aligned_cols=309 Identities=8% Similarity=-0.007 Sum_probs=154.7
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 018743 6 KCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIE 85 (351)
Q Consensus 6 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 85 (351)
+.|+++.+.++...+...-+. .-..|..+...+ .....++...++.+-.. .+.....-...+..+.+.+++....
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~l~~~~~w~~~l 92 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPT---LPPARTLQSRFVNELARREDWRGLL 92 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHhCCCHHHHH
Confidence 456666666655544322111 122333333222 22245555555554332 1222233345556677778877766
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHH--HHHHHHHHH
Q 018743 86 KILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEK--MEKWYNEFN 163 (351)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~ 163 (351)
..+.. .+.+...-.....+....|+..+|......+-..+...| ..+..++..+.+.|.... ...-++.+.
T Consensus 93 ~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p--~~c~~l~~~~~~~g~lt~~~~~~R~~~al 165 (618)
T 1qsa_A 93 AFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQP--NACDKLFSVWRASGKQDPLAYLERIRLAM 165 (618)
T ss_dssp HHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCC--THHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 64432 244555555566777788888777777777655543333 346677777776554432 222222222
Q ss_pred hcC-----------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---hHHHHHHHHHhcCCHHHHHHH
Q 018743 164 LMG-----------VKADIQ-TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV---TYNIVIETFGKAGHIEKMEEY 228 (351)
Q Consensus 164 ~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~ 228 (351)
..| ++++.. ....++.... ++..+..... . ..++.. .+...+.-+.+ .+++.|...
T Consensus 166 ~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar-~d~~~A~~~ 236 (618)
T 1qsa_A 166 KAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---T--TGATDFTRQMAAVAFASVAR-QDAENARLM 236 (618)
T ss_dssp HTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHH-HCHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHh---c--cCCChhhHHHHHHHHHHHHh-cCHHHHHHH
Confidence 222 111111 1111111111 1111111110 0 112222 11112222333 378889999
Q ss_pred HHHHHHcCCCccHHHH----HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 229 FKKMKHRGMKPNSITY----CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 229 ~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
+....+.. ..+.... ..+.......+...++...+....... .+.....-.+....+.|+++.|...|+.|..
T Consensus 237 ~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~ 313 (618)
T 1qsa_A 237 IPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPM 313 (618)
T ss_dssp HHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred HHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccc
Confidence 88876543 2333322 233333334453445556665544332 2333444455555678999999999988865
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743 305 RHCVPDNITFATMIQAYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 339 (351)
... ....-.--+.+++...|+.++|..+|+++..
T Consensus 314 ~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 314 EAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 321 1233334456678889999999999988764
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.87 E-value=1.4 Score=29.54 Aligned_cols=70 Identities=7% Similarity=-0.059 Sum_probs=29.0
Q ss_pred cCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Q 018743 274 LDTPFFNCIISAYGQAGD---VEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENKMIAMKEN 343 (351)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 343 (351)
|++.+--.+..++.+..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|++..+.+++..|.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 344444444444444433 2234444444443321111223333444444555555555555554444443
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.65 E-value=0.21 Score=35.04 Aligned_cols=114 Identities=7% Similarity=-0.025 Sum_probs=66.6
Q ss_pred ccccCCCHHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH-HHHHHHH
Q 018743 3 MLGKCKQPEQASLLFEVMLSDG-LKPS-------VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY-TYSILIK 73 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~ 73 (351)
.+...|.++.|+-+.+.+.... ..|+ ..++..+.+++...|++.+|...|++..+....-+... ++..+.
T Consensus 29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~- 107 (167)
T 3ffl_A 29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG- 107 (167)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc-
Confidence 3456788888888887755431 1222 23667778899999999999999999755322222111 111110
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 74 SCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
. . ..... ......+...--.+..||.+.+++++|+.+++.+..+
T Consensus 108 ~--~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 108 N--S-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred c--c-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0 0 00000 0112334455556888899999999999999887554
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.23 E-value=1.4 Score=27.88 Aligned_cols=50 Identities=4% Similarity=0.008 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhc
Q 018743 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
|.-+..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.+..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444555555555555666666666666666666666666666665544
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.67 E-value=2.7 Score=32.23 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=23.2
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhh
Q 018743 5 GKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMK 56 (351)
Q Consensus 5 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 56 (351)
.+.|++++|+.....-++..+. |...-..+++.+|-.|++++|.+-++...
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444444444444444444333 44444444444444444444444444443
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.65 E-value=2.8 Score=28.50 Aligned_cols=70 Identities=7% Similarity=-0.093 Sum_probs=34.5
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 018743 203 FPTVVTYNIVIETFGKAGH---IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDV 272 (351)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 272 (351)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 3444444444445555443 234555555555543111223334445555666666666666666655543
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.15 E-value=3 Score=28.00 Aligned_cols=63 Identities=6% Similarity=0.025 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHH
Q 018743 80 RFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMIS 144 (351)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 144 (351)
|.-+..+-++.+....+.|++.+....+++|-+.+++..|.++|+.+..+- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 444556666666667777777777777888888888888888887776663 333445655553
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.89 E-value=2.5 Score=26.60 Aligned_cols=88 Identities=9% Similarity=0.032 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 018743 78 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 157 (351)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 157 (351)
....++|..+-+.+...+. ...+-..-+..+...|++++|..+.+.. +.||...|.++.. .+.|-.+++..
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 3456777777777766542 2222222344566778888887766554 4677777766543 46677777777
Q ss_pred HHHHHHhcCCCCCHHHHH
Q 018743 158 WYNEFNLMGVKADIQTLN 175 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (351)
.+.++...| .|....|.
T Consensus 90 rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 90 RLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 777776665 44444443
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.60 E-value=2.6 Score=26.52 Aligned_cols=87 Identities=13% Similarity=0.055 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHH
Q 018743 78 FHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEK 157 (351)
Q Consensus 78 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 157 (351)
....++|..+-+.+...+. ...+-..-+..+...|++++|..+.+.. +.||...|.++.. .+.|-.+++..
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 3456777777777666542 2222222234566778888887776654 4677777766543 45666777777
Q ss_pred HHHHHHhcCCCCCHHHH
Q 018743 158 WYNEFNLMGVKADIQTL 174 (351)
Q Consensus 158 ~~~~~~~~~~~~~~~~~ 174 (351)
.+.++...| .|....|
T Consensus 91 rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCC-CHHHHHH
T ss_pred HHHHHHhCC-CHHHHHH
Confidence 776766655 4444444
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.32 E-value=5.6 Score=33.23 Aligned_cols=98 Identities=5% Similarity=-0.041 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcC-CCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHh---cCCCCCHHH--HH
Q 018743 102 TYNTIIDGYGKAKKFEEMESSFSAMVESG-GCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNL---MGVKADIQT--LN 175 (351)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~--~~ 175 (351)
+...+...|.+.|+++.|.+.+.++.... +...-...+-..+..+...+++..+...+.+... .+-.++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45556666667777777777776665432 1122233455566666666777776666666532 121222111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 176 ILTKSYGRAGMYDKMRSVMDFMQK 199 (351)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~ 199 (351)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223345666666666655444
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.87 E-value=10 Score=30.01 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=16.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 018743 320 AYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~ 340 (351)
-|...|+...|..+++...+.
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 466789999999988877643
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.29 E-value=11 Score=29.83 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=12.0
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHh
Q 018743 160 NEFNLMGVKADIQTLNILTKSYGR 183 (351)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~ 183 (351)
+-+.+.+.+++......++..+..
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH
Confidence 333444555555555555555444
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.94 E-value=12 Score=31.17 Aligned_cols=97 Identities=6% Similarity=-0.121 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHhH--H
Q 018743 138 TLNSMISAYGNSGNIEKMEKWYNEFNLMGVK--ADIQTLNILTKSYGRAGMYDKMRSVMDFMQKR---FFFPTVVTY--N 210 (351)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~ 210 (351)
+...+...|.+.|+++.|.+.+.++...... .-...+...++.+...+++..+...+.++... +..|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556677777777777777777777653222 22445566667777777777777777665432 222222110 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 018743 211 IVIETFGKAGHIEKMEEYFKKMKH 234 (351)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~ 234 (351)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111222345666666666655543
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.42 E-value=9.8 Score=27.70 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=38.2
Q ss_pred CCHhHHHHHHHHhhhcCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018743 255 GLIMKVDSILRQVENSDVILD-TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310 (351)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 310 (351)
+.......+|..|...++-.. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 346677777777776655432 44566777777777888888888887777766663
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.55 E-value=17 Score=29.03 Aligned_cols=81 Identities=9% Similarity=0.019 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 240 NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQ 319 (351)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 319 (351)
++.....+...|.+.+++.+|+..|- . +-.+.+..+..++.-+...+...++ +... ...+-
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfi-aRaVL 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------PLYC-ARAVL 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHH-HHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHH-HHHHH
Confidence 56666777788888888888777763 2 2222234554444333333221111 1111 12223
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 018743 320 AYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~ 339 (351)
-|...++...|..+++...+
T Consensus 196 ~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 36667777777776666554
No 270
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=81.25 E-value=18 Score=28.51 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743 244 YCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD--VEKMGELFLTMKERHCVPDNITFATMIQAY 321 (351)
Q Consensus 244 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (351)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+...+++..+.+.|+-+.......+.+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 467888888999999999999998743222 22333344444444333 455678888888777665544444444443
Q ss_pred HH
Q 018743 322 NA 323 (351)
Q Consensus 322 ~~ 323 (351)
..
T Consensus 248 ~~ 249 (307)
T 2zu6_B 248 NE 249 (307)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=80.63 E-value=21 Score=28.86 Aligned_cols=212 Identities=12% Similarity=0.085 Sum_probs=106.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018743 102 TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGN--IEKMEKWYNEFNLMGVKADIQTLNILTK 179 (351)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 179 (351)
....++.-|...++.++|...++++. .... .......++......++ -+.+-.++..+.. ++-+.......+..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~-~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ 131 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLN-LGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDK 131 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTT-CCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhC-Cchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 34667888999999999999999873 2111 22233344443333332 2345555565553 44444444444444
Q ss_pred HHHhcCCH----HHHHHHHHH----HHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH---HH-------------
Q 018743 180 SYGRAGMY----DKMRSVMDF----MQKRF-FFPTVVTYNIVIETFGKAGHIEKMEEYFKKM---KH------------- 234 (351)
Q Consensus 180 ~~~~~~~~----~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~------------- 234 (351)
.+....+. ..|..++-. +...+ ++|... ..... .. ..+.+.+.++.. ..
T Consensus 132 lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l-~~~~~----~~-~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG 205 (358)
T 3eiq_C 132 LLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYI-DSYKG----TV-DCVQARAALDKATVLLSMSKGGKRKDSVWG 205 (358)
T ss_dssp HHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTT-GGGC--------CCHHHHHHHHHHHHHHTC---------CCC
T ss_pred HHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHH-HHHhh----cc-cchHHHHHHHHHHHHHhccchHHHHHHhcC
Confidence 44333321 123332222 22222 222211 11000 00 111222222221 11
Q ss_pred --cCCCccH---HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhcCC
Q 018743 235 --RGMKPNS---ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD--VEKMGELFLTMKERHC 307 (351)
Q Consensus 235 --~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~ 307 (351)
.+..|.. .....++.-|...|+.++|...++++...... ...+...+..++-+.++ .+...+++..+...|+
T Consensus 206 ~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 206 SGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 0222322 23578888899999999999999998743222 23333444444444333 4567788888888776
Q ss_pred CCCHHHHHHHHHHHHHc
Q 018743 308 VPDNITFATMIQAYNAL 324 (351)
Q Consensus 308 ~p~~~~~~~l~~~~~~~ 324 (351)
-+.......+.+.+...
T Consensus 285 ls~~q~~~Gf~~vl~~l 301 (358)
T 3eiq_C 285 ITIDQMKRGYERIYNEI 301 (358)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 65555555554444443
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.53 E-value=16 Score=26.67 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 018743 149 SGNIEKMEKWYNEFNLMGVKA-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204 (351)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 204 (351)
.+....+.++|..|...|+-. -...|......+...|++.+|.++|..-.+.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344567777777777666543 34456677777777777777777777777766555
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.01 E-value=23 Score=28.31 Aligned_cols=139 Identities=9% Similarity=0.135 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCccHHHHHHHH
Q 018743 173 TLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEY----FKKMKHRGMKPNSITYCSLV 248 (351)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 248 (351)
+|.++..-|.+.+++++|.+++-.-. ..+.+.|+...|.++ ++...+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34445555666677777766653321 122333444333332 34444556666666666666
Q ss_pred HHHHhcCCHh-HHHHHHHHhhh----cC--CccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743 249 SAYSKAGLIM-KVDSILRQVEN----SD--VILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAY 321 (351)
Q Consensus 249 ~~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (351)
..+.....-+ .=.++++++.+ .+ ..-++.....+...|.+.+++.+|...|- .|-.+++..+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 6555444311 11223333321 11 33467788889999999999999988873 23344446776666555
Q ss_pred HHcCCHHHH
Q 018743 322 NALGMTEAA 330 (351)
Q Consensus 322 ~~~g~~~~A 330 (351)
...+...++
T Consensus 178 ~~~~~~~e~ 186 (336)
T 3lpz_A 178 YKQDESHTA 186 (336)
T ss_dssp HHTSCGGGH
T ss_pred HHhcCCccH
Confidence 555444333
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.97 E-value=19 Score=24.85 Aligned_cols=50 Identities=8% Similarity=0.188 Sum_probs=23.8
Q ss_pred HHHHHHHhhhcCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018743 260 VDSILRQVENSDVILD-TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309 (351)
Q Consensus 260 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 309 (351)
...+|..|...++-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555544433221 2334444455555555555555555555544444
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.51 E-value=41 Score=27.65 Aligned_cols=295 Identities=11% Similarity=0.030 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccH---HHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhHH-
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDV---YTYSILIKSCTKFH-RFDLIEKILAEMSYLGIECSAVTY- 103 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~- 103 (351)
..+...|...|.+.|+.++..+++.......+.-|-. .....++..+.... ..+.-.++..+..+.. .-...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4567778999999999999999998887644333333 34667777776643 3444444444443321 0111223
Q ss_pred -----HHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC----HhHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CCCCCHH
Q 018743 104 -----NTIIDGYGKAKKFEEMESSFSAMVESGGCHPD----IFTLNSMISAYGNSGNIEKMEKWYNEFNLM--GVKADIQ 172 (351)
Q Consensus 104 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 172 (351)
..++..|...|++.+|.+++.++.+.-.-..| ...+..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25788899999999999998888764211111 123555667788899999999998876532 2323433
Q ss_pred HHHH----HHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHhHH-----HHHHHHHhcCCHHHHHHHHH-HHHHcCCCccH
Q 018743 173 TLNI----LTKSYG-RAGMYDKMRSVMDFMQKRFFFPTVVTYN-----IVIETFGKAGHIEKMEEYFK-KMKHRGMKPNS 241 (351)
Q Consensus 173 ~~~~----l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~ 241 (351)
.... -...+. ..+++..|...|-+..+.-...+...+. .++.+.. .++..+.-.++. .....-..|..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-LGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-TTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-cCCHHHHHHHhccccccccCCccH
Confidence 3222 223345 6788998888876654321111211111 1122222 233222222222 21111124566
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCHHHHHH
Q 018743 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERH-----CVPDNITFAT 316 (351)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~ 316 (351)
..+..++.++ ..+++.+...+++..... +..|+.....+ ..+++.+...+ .+-...++..
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~-------------~~L~~~Ir~~~L~~i~~pYsrIsl~~ 321 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAHL-------------GTLYDTMLEQNLCRIIEPYSRVQVAH 321 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHHH-------------HHHHHHHHHHHHHHHHTTCSEEEHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHHH-------------HHHHHHHHHHHHHHHhHhhceeeHHH
Confidence 6666677665 456787777777665432 33344321111 12222222111 1224456666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcc
Q 018743 317 MIQAYNALGMTEAAQNLENKMIAMKE 342 (351)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~~~ 342 (351)
+...+. . ..+++...+-+|+..+.
T Consensus 322 iA~~l~-l-s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 322 VAESIQ-L-PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHT-C-CHHHHHHHHHHHHHTTS
T ss_pred HHHHHC-c-CHHHHHHHHHHHHHCCC
Confidence 665553 3 67899999999987654
No 276
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=69.76 E-value=24 Score=24.32 Aligned_cols=65 Identities=15% Similarity=0.335 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--HhHHHHHHHHhhhcCCc
Q 018743 208 TYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL--IMKVDSILRQVENSDVI 273 (351)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 273 (351)
....++.-|...|+.++|...++++....+. ...+...+..++-+.++ .+.+..++..+.+.++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3566777888888888888888876421111 12233444444444322 33456666666665554
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.70 E-value=48 Score=27.27 Aligned_cols=159 Identities=8% Similarity=-0.024 Sum_probs=80.8
Q ss_pred ccccCCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHhccC-ChHHHHHHHHHhhccCCCCccHHHH------HHH
Q 018743 3 MLGKCKQPEQASLLFEVMLSD-GLKP---SVDVYTALVSAYGQSG-LLDEAFSTINDMKSVSDCKPDVYTY------SIL 71 (351)
Q Consensus 3 ~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~------~~l 71 (351)
.|.+.|+.++..+++...... +.-| .......++..+.... ..+.-.++.....+.. .-.-.+| ..+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~r~flr~~l~~kL 105 (394)
T 3txn_A 28 LYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA--KQEKRTFLRQSLEARL 105 (394)
T ss_dssp HHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 355666666666666654332 1111 2345556666665533 2333333333332210 0011112 245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCHhHHHHH---
Q 018743 72 IKSCTKFHRFDLIEKILAEMSYLGIECS-----AVTYNTIIDGYGKAKKFEEMESSFSAMVESGG-CHPDIFTLNSM--- 142 (351)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l--- 142 (351)
+..|...|++.+|..++.++.+.=-..| ..++..-+..|...+++.++...+........ +.+++.....+
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~ 185 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQ 185 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence 6677778888888777777755311111 23344555667777888888877777643321 12333222211
Q ss_pred -HHHHh-cCCCHHHHHHHHHHHH
Q 018743 143 -ISAYG-NSGNIEKMEKWYNEFN 163 (351)
Q Consensus 143 -~~~~~-~~~~~~~a~~~~~~~~ 163 (351)
...+. ..+++..|...|-+..
T Consensus 186 ~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 186 SGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hhHHHHHhccCHHHHHHHHHHHH
Confidence 22344 6777877777666553
No 278
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=67.22 E-value=4.6 Score=30.67 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=16.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccCC
Q 018743 318 IQAYNALGMTEAAQNLENKMIAMKENSG 345 (351)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 345 (351)
+...+..|+.+-+..++++-....+.++
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 256 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRREIADAAAHH 256 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHcCCHHHHHHHHHhCCCcccccc
Confidence 3445677888888777777655444433
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.12 E-value=28 Score=24.01 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 018743 155 MEKWYNEFNLMGVKA-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204 (351)
Q Consensus 155 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 204 (351)
+.++|..|...|+-. -...|......+...|++.+|.++|..-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 566666666655433 23455666666666666666666666666655554
No 280
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=66.25 E-value=59 Score=27.39 Aligned_cols=70 Identities=10% Similarity=0.001 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 018743 24 GLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLG 95 (351)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 95 (351)
|++.-...|..-...+...|++++|-.+--... .|+--+..|.+.+-..=..-|+..-.+.+|..+.+.|
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP--~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAP--KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG--GGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc--cccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 333334444444445555555555555444433 2333344444433333333333344444444444443
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.09 E-value=31 Score=24.16 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhcCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 018743 259 KVDSILRQVENSDVILD-TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNI 312 (351)
Q Consensus 259 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 312 (351)
....+|..|...++-.. ...|......+-..|++.+|.++|..-++.+-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 36667887776665433 4456777777888888888888888888877666543
No 282
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=65.90 E-value=60 Score=27.35 Aligned_cols=72 Identities=8% Similarity=0.075 Sum_probs=36.4
Q ss_pred HcCCCCCHhHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 018743 93 YLGIECSAVTYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMG 166 (351)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 166 (351)
+.|++--...|..-...+...|++++|-++-....+ |+-.+..|.+.+-..=...|...-.+.+|..+.+.|
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 334444444555555566666666666666555422 234455555444443333444445555555555444
No 283
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=65.13 E-value=25 Score=24.57 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=10.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhc
Q 018743 143 ISAYGNSGNIEKMEKWYNEFNLM 165 (351)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~ 165 (351)
+..+...++.-.|.++++.+.+.
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHhh
Confidence 33333444444444555444443
No 284
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=63.93 E-value=41 Score=24.76 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=10.6
Q ss_pred HHhccCChHHHHHHHHHhhc
Q 018743 38 AYGQSGLLDEAFSTINDMKS 57 (351)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~ 57 (351)
.|.++|.+++|.+++++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 34455555555555555543
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.90 E-value=38 Score=24.44 Aligned_cols=18 Identities=11% Similarity=0.013 Sum_probs=8.0
Q ss_pred ccHHHHHHHHHHHHhcCC
Q 018743 63 PDVYTYSILIKSCTKFHR 80 (351)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~ 80 (351)
++...-...+..+.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444444444444
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=63.01 E-value=22 Score=27.06 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=9.5
Q ss_pred HHHHhccCChHHHHHHHH
Q 018743 36 VSAYGQSGLLDEAFSTIN 53 (351)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~ 53 (351)
+...++.|+.+....+++
T Consensus 9 L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 344455666655554444
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.12 E-value=32 Score=22.90 Aligned_cols=64 Identities=16% Similarity=0.340 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC--HhHHHHHHHHhhhcCCc
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL--IMKVDSILRQVENSDVI 273 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 273 (351)
...++.-|...|+.++|...++++....+. .......+..++-+.++ .+....++..+.+.++-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 455667777777777777777776421111 12223333444443322 23455566666555544
No 288
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=61.13 E-value=32 Score=23.40 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 018743 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255 (351)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 255 (351)
-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444333333333333333333333
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.95 E-value=83 Score=27.00 Aligned_cols=66 Identities=11% Similarity=0.067 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHH--HH-HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018743 29 VDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVY--TY-SILIKSCTKFHRFDLIEKILAEMSYL 94 (351)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 94 (351)
...+|.+++.|...+.++.|..+..+..-.....+|.. .| -.+.....-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34556666666666666666666665532000011111 11 12233444555666666665555443
No 290
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=59.91 E-value=38 Score=23.03 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=9.4
Q ss_pred CHhHHHHHHHHhhhcCCccCHHh
Q 018743 256 LIMKVDSILRQVENSDVILDTPF 278 (351)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~~~~~ 278 (351)
..-.|.++++.+.+.++..+..+
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aT 58 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVAT 58 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHH
T ss_pred CCCCHHHHHHHHHHhCCCCChhh
Confidence 33344444444444333333333
No 291
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.50 E-value=47 Score=23.97 Aligned_cols=143 Identities=13% Similarity=0.016 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH
Q 018743 26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105 (351)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 105 (351)
.++...-...+..+.+.|..+ +...+..+.. .++...-...+.++...++.+. ...+..+.. .++..+-..
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~ 100 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDER-AVEPLIKALK----DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQS 100 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHH
Confidence 346677777777777777643 4444444443 3566666666667777666433 333333332 345555555
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018743 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185 (351)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (351)
.+.++.+.++.+ +...+..+.+ .++..+-...+.++.+.|+.+ +...+..+.. .++..+-...+.++.+.+
T Consensus 101 a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 101 AAVALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 666666666543 3344444432 345555555555555555533 3333333332 344555555555555555
Q ss_pred C
Q 018743 186 M 186 (351)
Q Consensus 186 ~ 186 (351)
.
T Consensus 172 ~ 172 (211)
T 3ltm_A 172 G 172 (211)
T ss_dssp S
T ss_pred c
Confidence 4
No 292
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=59.15 E-value=40 Score=23.09 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcC
Q 018743 220 GHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAG 255 (351)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 255 (351)
+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 40 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 40 GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333444444444444333333333333333333333
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.23 E-value=57 Score=24.52 Aligned_cols=90 Identities=7% Similarity=-0.107 Sum_probs=47.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 018743 177 LTKSYGRAGMYDKMRSVMDFMQKR--FFFP----TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSA 250 (351)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 250 (351)
-++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 466777778888888888776542 1221 0111122222222222233333333444 22 3445556666677
Q ss_pred HHhcCCHhHHHHHHHHhhh
Q 018743 251 YSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 251 ~~~~g~~~~a~~~~~~~~~ 269 (351)
+.+.|+.++|..+|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7777777777777766553
No 294
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=57.65 E-value=43 Score=22.95 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=29.5
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCH
Q 018743 197 MQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLI 257 (351)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 257 (351)
+.+.|..++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4445555444322 2334444443 4455666666666554444555555555555555544
No 295
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=57.30 E-value=40 Score=22.55 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=25.8
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCC
Q 018743 197 MQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGL 256 (351)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 256 (351)
+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 334444443332 22333333333 444555555555555444444444444444444443
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.71 E-value=48 Score=23.23 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 018743 155 MEKWYNEFNLMGVKAD-IQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT 205 (351)
Q Consensus 155 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 205 (351)
..++|..|...|+-.. ...|......+-..|++.+|.++|..-.+.+..|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4455666665554332 34455666666666666666666666666555553
No 297
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=56.54 E-value=45 Score=22.84 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=28.6
Q ss_pred HHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743 232 MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291 (351)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 291 (351)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.++..+..+.-..+..+...|-
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 44555554433 233444444445555666666666655554455554444444444443
No 298
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=56.44 E-value=40 Score=22.96 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743 231 KMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291 (351)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 291 (351)
.+.+.|++++.. -..++..+...+ .-.|.++++.+.+.++..+..+.-.-+..+...|-
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 344455555443 222333333334 44566666666555544454444444444444443
No 299
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=56.17 E-value=1.1e+02 Score=27.11 Aligned_cols=49 Identities=2% Similarity=-0.170 Sum_probs=27.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 018743 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLE 334 (351)
Q Consensus 283 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (351)
+..+...|....|...+..+.+. . +......+.......|.++.++...
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 34566677777777777776653 2 2333334444455566666655433
No 300
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.86 E-value=60 Score=24.10 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhhcCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 018743 258 MKVDSILRQVENSDVILD-TPFFNCIISAYGQAGDVEKMGELFLTMKERHCVP 309 (351)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 309 (351)
+....+|..|...++-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466678888776655433 4457777777888888888888888888776666
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=55.47 E-value=46 Score=22.61 Aligned_cols=61 Identities=7% Similarity=0.139 Sum_probs=43.4
Q ss_pred HHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 018743 265 RQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGM 326 (351)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 326 (351)
+.+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3455677775543 335566666677788899999999887766677777767777887775
No 302
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=54.04 E-value=46 Score=22.25 Aligned_cols=61 Identities=11% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcC-CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH
Q 018743 231 KMKHRGMKPNSITYCSLVSAYSKAG-LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292 (351)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 292 (351)
.+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.++..+..+...-+..+...|-+
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 355666666654 233444555554 5667777777777766666666655555555555544
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.78 E-value=68 Score=24.08 Aligned_cols=90 Identities=11% Similarity=0.051 Sum_probs=51.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCc----cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHH
Q 018743 212 VIETFGKAGHIEKMEEYFKKMKHR--GMKP----NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISA 285 (351)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (351)
-+..+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467778888888888888876542 2222 111222223332232223334444444432 3355566666777
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 018743 286 YGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~ 304 (351)
+.+.|+-++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7888888888888776664
No 304
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.94 E-value=39 Score=25.57 Aligned_cols=238 Identities=13% Similarity=0.072 Sum_probs=106.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCC---HhHHHHHH
Q 018743 70 ILIKSCTKFHRFDLIEKILAEMSYLGIECSAV---TYNTIIDGYGKAKKFEEMESSFSAMVESGGCHPD---IFTLNSMI 143 (351)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 143 (351)
..+...++.|+.+.+..++ +.|..++.. .-.+.+...+..|+.+-+..+++ . |..++ ....+. +
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~-g~~~~~~~~~g~t~-L 76 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR----H-GADPVLRKKNGATP-F 76 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH----T-TCCTTCCCTTCCCH-H
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH----c-CCCCcccCCCCCCH-H
Confidence 3455566778876555544 445444322 11234445556677655444443 2 22222 222222 3
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------------h
Q 018743 144 SAYGNSGNIEKMEKWYNEFNLMGVKADI---QTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVV------------T 208 (351)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~ 208 (351)
...+..|+.+-+. .+.+.|..++. .-.+ .+...+..|+.+-+. .+.+.+..++.. .
T Consensus 77 ~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~~~~~~~~~~~ 147 (285)
T 1wdy_A 77 LLAAIAGSVKLLK----LFLSKGADVNECDFYGFT-AFMEAAVYGKVKALK----FLYKRGANVNLRRKTKEDQERLRKG 147 (285)
T ss_dssp HHHHHHTCHHHHH----HHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHH----HHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred HHHHHcCCHHHHH----HHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHH----HHHHhCCCcccccccHHHHHhhccC
Confidence 3344556655443 34444544332 1122 233345566655444 344444433321 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHh--HHHHH
Q 018743 209 YNIVIETFGKAGHIEKMEEYFKKMKHRGMKPN---SITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF--FNCII 283 (351)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~ 283 (351)
-...+...+..|+.+-+..+++. .|..++ ....+.+.. ....++......+++.+.+.|..++... -...+
T Consensus 148 g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L 223 (285)
T 1wdy_A 148 GATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 01233344456666544443332 143332 222233333 3345665555667777777776655321 12334
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHH
Q 018743 284 SAYGQAGDVEKMGELFLTMKERHCVPDNI---TFATMIQAYNALGMTEAAQNLE 334 (351)
Q Consensus 284 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~ 334 (351)
...+..|+.+-+..+++. .|..++.. -. +.+....+.|..+-+.-++
T Consensus 224 ~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~-t~l~~A~~~~~~~i~~~Ll 273 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGK-TALLLAVELKLKKIAELLC 273 (285)
T ss_dssp HHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc---cCCCccccCCCCC-cHHHHHHHcCcHHHHHHHH
Confidence 445556666544433331 44444422 22 2334445566665444333
No 305
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=52.94 E-value=63 Score=23.44 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=14.5
Q ss_pred HHHHhhcCChHHHHHHHHHHHhc
Q 018743 107 IDGYGKAKKFEEMESSFSAMVES 129 (351)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~ 129 (351)
+..|.+.|.+++|.++|++....
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHccchHHHHHHHHHHhcC
Confidence 34567777777777777775443
No 306
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=52.43 E-value=50 Score=22.61 Aligned_cols=61 Identities=10% Similarity=0.207 Sum_probs=32.2
Q ss_pred HHHHcCCCccHHHHHHHHHHHHhcC-CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH
Q 018743 231 KMKHRGMKPNSITYCSLVSAYSKAG-LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292 (351)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 292 (351)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-+
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3455666655432 23344444444 4556667777666665555555555555555555543
No 307
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.97 E-value=81 Score=24.17 Aligned_cols=48 Identities=6% Similarity=-0.035 Sum_probs=20.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhcCChHHHHHHH
Q 018743 72 IKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKAKKFEEMESSF 123 (351)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 123 (351)
+...+..|+.+.+..+++ .|..++..--.+.+...+..|+.+-+..++
T Consensus 35 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 334445666654444443 333332221122333444556655444443
No 308
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=49.31 E-value=38 Score=21.11 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=43.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 018743 15 LLFEVMLSDGLKPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87 (351)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 87 (351)
.+++.+.+.|+- +..-...+-. .......++|.++++.+.. . .| ..|..++.++...++...|..+
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~-r--G~--~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLET-R--GS--QALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTT-S--CT--THHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHH-c--Ch--HHHHHHHHHHHHcCcHHHHHHH
Confidence 367788888766 5555554333 1122578899999998886 3 23 4488888888777776665443
No 309
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=49.08 E-value=15 Score=20.52 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=14.0
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCH
Q 018743 113 AKKFEEMESSFSAMVESGGCHPDI 136 (351)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~ 136 (351)
.-+++.|...|.++...+.+||+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 446666666666665555455543
No 310
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=48.92 E-value=65 Score=22.47 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=22.1
Q ss_pred CCHhHHHHHHHHhhhcCCcc--CHHhHHHHHH-H-----HHhcCCHHHHHHHHHHHH
Q 018743 255 GLIMKVDSILRQVENSDVIL--DTPFFNCIIS-A-----YGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~ 303 (351)
|++-+|-++++.+=.....+ ....|..||+ . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555544433333 2334444444 1 122455555555554443
No 311
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=48.82 E-value=32 Score=23.21 Aligned_cols=48 Identities=8% Similarity=0.139 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCH
Q 018743 245 CSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDV 292 (351)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 292 (351)
..++..+...+..-.|.++++.+.+.++..+..+.-.-+..+...|-+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344555555555666777777776665555555554445555554443
No 312
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=48.72 E-value=65 Score=22.41 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=40.7
Q ss_pred HHHHHHHHH-HHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc--CCccCHHhHHHHHHHHHhcCCHHH
Q 018743 223 EKMEEYFKK-MKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENS--DVILDTPFFNCIISAYGQAGDVEK 294 (351)
Q Consensus 223 ~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~ 294 (351)
+.+.+-+.+ +.+.|++++.. -..++..+...+..-.|.++++.+.+. ++..+..|.-.-+..+...|-+.+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 444444433 44567666543 344555666666667777777777766 555555555555555555555433
No 313
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.89 E-value=82 Score=27.05 Aligned_cols=64 Identities=8% Similarity=0.175 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC-ccCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 242 ITYCSLVSAYSKAGLIMKVDSILRQVENSDV-ILDTP---FFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
..++.+++.|...+.++.|..+..+..-... .++.. .+-.+.+.+.-.+++.+|.+.+..+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4556666666666667777766666542111 01111 1122344555566666666666665543
No 314
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.48 E-value=34 Score=24.34 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHH--HHHHHHHHcCCHHHHHH
Q 018743 295 MGELFLTMKERHCVPDNITFA--TMIQAYNALGMTEAAQN 332 (351)
Q Consensus 295 a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~ 332 (351)
-.++.+.+.+.|..++..... +-+......|+.+-+.-
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~ 196 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence 355566666666555433211 22333445565554433
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.44 E-value=1.9e+02 Score=27.29 Aligned_cols=28 Identities=7% Similarity=-0.140 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 018743 313 TFATMIQAYNALGMTEAAQNLENKMIAM 340 (351)
Q Consensus 313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (351)
.|..++..+.+.+-++.+.++.+.+++.
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 4455555555566666665555555543
No 316
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=46.28 E-value=2.3e+02 Score=27.93 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=55.0
Q ss_pred HhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 018743 257 IMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLENK 336 (351)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (351)
.+...+.|.++.+.--.-|.......+..-..++++..|++++.++.+. .|....|..++..+...| |+....+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 3445566666665422224444444444555789999999999999986 478889999988887777 4555555655
Q ss_pred HHHhccc
Q 018743 337 MIAMKEN 343 (351)
Q Consensus 337 ~~~~~~~ 343 (351)
+.-....
T Consensus 1342 ~~~~~~p 1348 (1354)
T 3lxu_X 1342 MMITAFP 1348 (1354)
T ss_dssp HHHHHSC
T ss_pred hhhhhCc
Confidence 5544433
No 317
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=44.97 E-value=47 Score=19.64 Aligned_cols=7 Identities=0% Similarity=0.572 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 018743 261 DSILRQV 267 (351)
Q Consensus 261 ~~~~~~~ 267 (351)
.++++.+
T Consensus 37 ~el~~~l 43 (83)
T 2fu4_A 37 EDLYKRL 43 (83)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 318
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=44.57 E-value=54 Score=20.26 Aligned_cols=24 Identities=13% Similarity=-0.108 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 279 FNCIISAYGQAGDVEKMGELFLTM 302 (351)
Q Consensus 279 ~~~l~~~~~~~g~~~~a~~~~~~~ 302 (351)
+......+.+.|++++|++..+..
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 334455566666666666655543
No 319
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=43.74 E-value=49 Score=21.97 Aligned_cols=46 Identities=2% Similarity=0.022 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCC
Q 018743 246 SLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGD 291 (351)
Q Consensus 246 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 291 (351)
.++..+...+..-.|.++++.+.+.++..+..|.-..+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444444555556666666666665555555554444455554443
No 320
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=43.71 E-value=40 Score=18.51 Aligned_cols=14 Identities=21% Similarity=0.041 Sum_probs=6.9
Q ss_pred ChHHHHHHHHHhhc
Q 018743 44 LLDEAFSTINDMKS 57 (351)
Q Consensus 44 ~~~~a~~~~~~~~~ 57 (351)
..++|..+-+.+..
T Consensus 21 cH~EA~tIA~~L~~ 34 (61)
T 3ph0_C 21 CHQEAASIADWLAQ 34 (61)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555555443
No 321
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=42.92 E-value=46 Score=18.99 Aligned_cols=46 Identities=15% Similarity=-0.032 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 018743 278 FFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNAL 324 (351)
Q Consensus 278 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 324 (351)
.++.++..++...-+++++..+.++.+.|. .+...|..-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 466677777777777888888888887764 3566666656655554
No 322
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=41.86 E-value=1.5e+02 Score=24.78 Aligned_cols=27 Identities=7% Similarity=-0.024 Sum_probs=14.4
Q ss_pred CHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 135 DIFTLNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
+......++.. ..|+..++..+++.+.
T Consensus 193 ~~~al~~L~~~--~~Gd~R~lln~Le~a~ 219 (447)
T 3pvs_A 193 PDETRRAIAEL--VNGDARRALNTLEMMA 219 (447)
T ss_dssp CHHHHHHHHHH--HCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 44444444443 3566666666666554
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.79 E-value=87 Score=21.85 Aligned_cols=48 Identities=15% Similarity=0.051 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCc--cHHHHHHHHH-H-----HHhcCCHhHHHHHHHH
Q 018743 219 AGHIEKMEEYFKKMKHRGMKP--NSITYCSLVS-A-----YSKAGLIMKVDSILRQ 266 (351)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~ 266 (351)
.|++-+|.++++..-...-.+ ....|..||+ . ..+.|+...|..++.+
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~ 100 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRT 100 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 377777777777765543344 3445555555 2 1234555555555544
No 324
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=41.67 E-value=29 Score=19.35 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018743 293 EKMGELFLTMKERHCVPDNITFATMIQAY 321 (351)
Q Consensus 293 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 321 (351)
++|.+.|.+|++..-.+..-+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56666676666443333445666666655
No 325
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=41.54 E-value=1.2e+02 Score=25.58 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 018743 245 CSLVSAYSKAGLIMKVDSILRQVENSD 271 (351)
Q Consensus 245 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 271 (351)
+.+.+.|.+.++...+..+++.+...+
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~ 206 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKS 206 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 444455555555555555555544433
No 326
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.24 E-value=53 Score=21.79 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743 211 IVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258 (351)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 258 (351)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 455566666667788888888887765666777666677777766554
No 327
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.94 E-value=1.4e+02 Score=24.11 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=20.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhc
Q 018743 31 VYTALVSAYGQSGLLDEAFSTINDMKS 57 (351)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 57 (351)
....++.-|...++.++|...++.+..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 345567778888888888888888763
No 328
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=40.36 E-value=1.4e+02 Score=25.95 Aligned_cols=73 Identities=10% Similarity=0.042 Sum_probs=30.0
Q ss_pred CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 018743 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAA 330 (351)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 330 (351)
+.+.....+.++...-+.-+..-..-++..|.+.|-.+.|.++++.+-..-+. +...+ ..+..|.++|+++..
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 33444455555544333335555666777777777777777777777654332 33444 344556777776654
No 329
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.68 E-value=70 Score=23.30 Aligned_cols=51 Identities=12% Similarity=0.017 Sum_probs=23.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHH
Q 018743 283 ISAYGQAGDVEKMGELFLTMKERHCVPDNITF--ATMIQAYNALGMTEAAQNLENKM 337 (351)
Q Consensus 283 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 337 (351)
+...+..|+.+-+..+ .+.|..++.... .+.+....+.|+.+-+..+++..
T Consensus 181 L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLL----LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHHTCHHHHHHH----HHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 3344455665543333 334444432211 12334445667766665555543
No 330
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=39.55 E-value=49 Score=22.26 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHh
Q 018743 210 NIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIM 258 (351)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 258 (351)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4556666666677788899998888776667777777777777777554
No 331
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.45 E-value=91 Score=21.44 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH
Q 018743 140 NSMISAYGNSGNIEKMEKWYNEF 162 (351)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~ 162 (351)
..++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33444444445555555555444
No 332
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=39.42 E-value=1.1e+02 Score=22.30 Aligned_cols=17 Identities=6% Similarity=0.241 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHhcC
Q 018743 150 GNIEKMEKWYNEFNLMG 166 (351)
Q Consensus 150 ~~~~~a~~~~~~~~~~~ 166 (351)
.|++.|+-++-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44444444444444444
No 333
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=38.77 E-value=1.2e+02 Score=22.47 Aligned_cols=49 Identities=8% Similarity=0.013 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCHh------HHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 018743 116 FEEMESSFSAMVESGGCHPDIF------TLNSMISAYGNSGNIEKMEKWYNEFNL 164 (351)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (351)
.+.|+.+|+.+.+...++.+.. .-...+..|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 4566777776655431111110 011233456677777777777777654
No 334
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.61 E-value=1.1e+02 Score=22.18 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=12.9
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCC
Q 018743 148 NSGNIEKMEKWYNEFNLMGVKAD 170 (351)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~ 170 (351)
+..|++.|+-++-+|++.|-.|.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHH
Confidence 34566666666666666554443
No 335
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.21 E-value=1.2e+02 Score=22.51 Aligned_cols=51 Identities=8% Similarity=0.071 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 018743 154 KMEKWYNEFNLMGVKA-DIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFP 204 (351)
Q Consensus 154 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 204 (351)
....+|..|...|+-. -...|......+...|++.+|..+|..-.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4456666666655443 24455666666666677777777776666655554
No 336
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.63 E-value=1.4e+02 Score=22.66 Aligned_cols=123 Identities=12% Similarity=0.057 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCccHHHHHH
Q 018743 168 KADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAG-HIEKMEEYFKKMKHRGMKPNSITYCS 246 (351)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 246 (351)
.++..+-...+.++...|+.+ +...+..+.. .++...-...+.++...+ ..+.+...+..+.. .++...-..
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~ 211 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIE 211 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHH
Confidence 345555555556666655533 2222323322 134433344444444443 12344444444433 345555556
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 247 LVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 247 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
.+.++...|+......+...+.+. + .-...+.++.+.|+ ..+...+..+.+
T Consensus 212 A~~aL~~~~~~~~~~~L~~~l~d~----~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 212 AIIGLSYRKDKRVLSVLCDELKKN----T--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHTSS----S--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHHHhCCHhhHHHHHHHhcCc----c--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 666666666544333333333321 2 22234455555555 244445554443
No 337
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=36.53 E-value=49 Score=17.93 Aligned_cols=18 Identities=39% Similarity=0.366 Sum_probs=9.8
Q ss_pred HHHHcCC--HHHHHHHHHHH
Q 018743 320 AYNALGM--TEAAQNLENKM 337 (351)
Q Consensus 320 ~~~~~g~--~~~A~~~~~~~ 337 (351)
++.+.|. .+.|++++.+|
T Consensus 29 Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 29 ALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHh
Confidence 3444444 66666666555
No 338
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.10 E-value=29 Score=26.12 Aligned_cols=26 Identities=12% Similarity=-0.067 Sum_probs=14.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 018743 74 SCTKFHRFDLIEKILAEMSYLGIECS 99 (351)
Q Consensus 74 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 99 (351)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34456666666666666555554444
No 339
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.73 E-value=2.9e+02 Score=26.07 Aligned_cols=108 Identities=12% Similarity=0.056 Sum_probs=65.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------------
Q 018743 177 LTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGM------------------- 237 (351)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------- 237 (351)
++..+...|..+-+.++...+ +.++..--.+..+|...|++++|...|++... |+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 556666667766554433222 12332223456677777788888777765321 11
Q ss_pred ----CccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCH----HhHHHHHHHHHhcC
Q 018743 238 ----KPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDT----PFFNCIISAYGQAG 290 (351)
Q Consensus 238 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 290 (351)
.....-|..++..+.+.+.++.+.++-+...+.-..-|. ..|..++++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 112235788999999999999999988887754222233 36777777776654
No 340
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.56 E-value=1.3e+02 Score=21.95 Aligned_cols=180 Identities=9% Similarity=-0.010 Sum_probs=88.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHH
Q 018743 142 MISAYGNSGNIEKMEKWYNEFNLMGVKADIQT--LNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTV---VTYNIVIETF 216 (351)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~ 216 (351)
.+...+..|+.+.+..+++.+...+..++... -...+...+..|+.+-+. .+.+.|..++. ...+ .+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t-~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQT-AAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCC-HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCC-HHHHH
Confidence 34556778999988888887776665544321 122344455677765444 44445544432 2223 33444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHH---hHHHHHHHHHhcC
Q 018743 217 GKAGHIEKMEEYFKKMKHRGMKP---NSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTP---FFNCIISAYGQAG 290 (351)
Q Consensus 217 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g 290 (351)
+..|+.+-+..+++.....++.+ +....+.+. ..+..|+.+-...+++ .+..++.. .-...+...+..|
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQETVQLLLE----RGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHHHHHHHHH----cCCCcccccccCCCcHHHHHHHcC
Confidence 56777766655554432111111 222223333 3345566654444444 44433321 1123344445667
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 018743 291 DVEKMGELFLTMKERHCVPDNIT--FATMIQAYNALGMTEAAQNLEN 335 (351)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~ 335 (351)
+.+- ++.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 162 ~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 162 SLSM----VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp CHHH----HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred CHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 7654 444455566554322 1233444556777665544443
No 341
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=34.97 E-value=52 Score=24.57 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=14.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Q 018743 319 QAYNALGMTEAAQNLENKMIAMK 341 (351)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~~~ 341 (351)
......|+.+-+..+++.-....
T Consensus 226 ~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 226 KLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhCCCCCC
Confidence 34456778777777776654433
No 342
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.58 E-value=53 Score=23.24 Aligned_cols=14 Identities=0% Similarity=-0.076 Sum_probs=7.9
Q ss_pred hccCChHHHHHHHH
Q 018743 40 GQSGLLDEAFSTIN 53 (351)
Q Consensus 40 ~~~~~~~~a~~~~~ 53 (351)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 44566666555554
No 343
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=33.90 E-value=1.2e+02 Score=21.37 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHHhcC
Q 018743 170 DIQTLNILTKSYGRAG 185 (351)
Q Consensus 170 ~~~~~~~l~~~~~~~~ 185 (351)
+..+-...+.++.+.+
T Consensus 120 ~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIG 135 (201)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333344444433
No 344
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=33.20 E-value=3.1e+02 Score=25.70 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCH---HHHHHHHHHHHHcC----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 018743 176 ILTKSYGRAGMY---DKMRSVMDFMQKRF----FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLV 248 (351)
Q Consensus 176 ~l~~~~~~~~~~---~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (351)
.++...|..|.. +.|.+.|+.....+ ++|+.. ..+...-.+.|..++-..+++...... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 345555565553 35556666554321 334432 222233334555555555555555432 333344566
Q ss_pred HHHHhcCCHhHHHHHHHHhhh
Q 018743 249 SAYSKAGLIMKVDSILRQVEN 269 (351)
Q Consensus 249 ~~~~~~g~~~~a~~~~~~~~~ 269 (351)
.++....+.....++++....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTC
T ss_pred HHhCCCCCHHHHHHHHHHHhC
Confidence 666666666666666666554
No 345
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=33.13 E-value=1.4e+02 Score=21.65 Aligned_cols=56 Identities=9% Similarity=-0.035 Sum_probs=31.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 018743 283 ISAYGQAGDVEKMGELFLTMKERHCVP---------DNITFATMIQAYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 283 ~~~~~~~g~~~~a~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 339 (351)
+...+..|+.+-+..+++.+.+.|..+ |..-.+. +......|+.+-+..+++.-..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCcc
Confidence 344556677777777777777666433 2222222 3444567777766666655433
No 346
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.01 E-value=1.8e+02 Score=23.07 Aligned_cols=47 Identities=9% Similarity=-0.147 Sum_probs=22.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHH
Q 018743 286 YGQAGDVEKMGELFLTMKERHCVPDNITF--ATMIQAYNALGMTEAAQNLENK 336 (351)
Q Consensus 286 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~ 336 (351)
.+..|+.+ +.+.+.+.|..++.... .+-+...+..|..+-+..+++.
T Consensus 218 A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 218 AILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 34455554 33444455554442211 1223334566777766666654
No 347
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.56 E-value=1.1e+02 Score=20.28 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 018743 176 ILTKSYGRAGMYDKMRSVMDFM 197 (351)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~ 197 (351)
.++.-|...|+.++|...++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444555555555555544
No 348
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.46 E-value=1.9e+02 Score=23.07 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 018743 139 LNSMISAYGNSGNIEKMEKWYNEFN 163 (351)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (351)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 5667788888899999999888874
No 349
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.07 E-value=2.3e+02 Score=23.79 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=20.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHh
Q 018743 218 KAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSK 253 (351)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (351)
+.++.+.|+.++.+|.+.|..|....-..+..+...
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ed 302 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASED 302 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 345677777777777777655544433334444333
No 350
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.98 E-value=1.5e+02 Score=21.76 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHhcC
Q 018743 150 GNIEKMEKWYNEFNLMG 166 (351)
Q Consensus 150 ~~~~~a~~~~~~~~~~~ 166 (351)
.|++.|+-++-+|++.|
T Consensus 49 SDpDAALywLaRMl~~G 65 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAG 65 (213)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44444444444444444
No 351
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=31.56 E-value=1.1e+02 Score=19.89 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhh-cCCccCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 018743 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVEN-SDVILDTPFFNCIISAYGQAGDVEKMGELFL 300 (351)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 300 (351)
+.+|+.-+++.... ++|......++..+... ++.++++.+...+ .|. .+.++...++...+.|-+++. +.|.
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~ 76 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWL 76 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHH
Confidence 44455555554433 34444444555444332 4445555554432 233 344555555666666655444 4444
Q ss_pred HHH
Q 018743 301 TMK 303 (351)
Q Consensus 301 ~~~ 303 (351)
.|.
T Consensus 77 ~m~ 79 (119)
T 1wty_A 77 EML 79 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 352
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.24 E-value=1.2e+02 Score=22.17 Aligned_cols=186 Identities=8% Similarity=-0.024 Sum_probs=90.1
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcCCCCCCH---hHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHH
Q 018743 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDI---FTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQT--LNILTKS 180 (351)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 180 (351)
.+...+..|+.+.+..+++.+.+. +..++. .-.+ .+...+..|+.+-+. .+.+.|..++... -...+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t-~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQT-PLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCC-HHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-CCCCCcccccCCC-HHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHH
Confidence 345556778988887777766444 333332 2233 344556677765444 4444554443211 1223444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHhc
Q 018743 181 YGRAGMYDKMRSVMDFMQKRFFFP---TVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSIT---YCSLVSAYSKA 254 (351)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~ 254 (351)
.+..|+.+-+..+++.....+..+ +....+.+ ...+..|+.+- ++.+.+.|..++... -...+...+..
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence 556777776666555433211122 22223333 33445566544 444555565544221 22334444566
Q ss_pred CCHhHHHHHHHHhhhcCCccCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 018743 255 GLIMKVDSILRQVENSDVILDTPF--FNCIISAYGQAGDVEKMGELFLTMKERHCVPD 310 (351)
Q Consensus 255 g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 310 (351)
|+.+-+..+++ .|..++... -...+...+..|+.+ +.+.+.+.|..++
T Consensus 161 ~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 161 NSLSMVQLLLQ----HGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp TCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred CCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 77765544444 444433211 112333445566655 4444555665554
No 353
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.03 E-value=2.9e+02 Score=24.71 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=17.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhhc
Q 018743 31 VYTALVSAYGQSGLLDEAFSTINDMKS 57 (351)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 57 (351)
+|- +|..|.+.|.+++|.++.++...
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKA 180 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGG
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhh
Confidence 443 45667778888888877766653
No 354
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=30.33 E-value=74 Score=17.67 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=8.8
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 018743 149 SGNIEKMEKWYNEFNLMG 166 (351)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~ 166 (351)
.|+.+.|+..+-.|...+
T Consensus 36 ~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp TTCHHHHHHHHHHSSCCC
T ss_pred CCCHHHHHHHHHcCcCCC
Confidence 445555555555544333
No 355
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.14 E-value=2.1e+02 Score=22.77 Aligned_cols=20 Identities=10% Similarity=-0.117 Sum_probs=15.1
Q ss_pred HHhccCChHHHHHHHHHhhc
Q 018743 38 AYGQSGLLDEAFSTINDMKS 57 (351)
Q Consensus 38 ~~~~~~~~~~a~~~~~~~~~ 57 (351)
.+...|++++|+..|+.+..
T Consensus 123 k~~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 123 KNFKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 34567888888888887764
No 356
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=30.06 E-value=49 Score=25.06 Aligned_cols=18 Identities=6% Similarity=-0.005 Sum_probs=10.9
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 018743 319 QAYNALGMTEAAQNLENK 336 (351)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~ 336 (351)
...+..|+.+-+..+++.
T Consensus 238 ~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 238 ALAASSGKIGVLAYILQR 255 (273)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHC
Confidence 344577777666655554
No 357
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=28.64 E-value=1e+02 Score=21.81 Aligned_cols=53 Identities=15% Similarity=-0.027 Sum_probs=38.8
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 018743 274 LDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMT 327 (351)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 327 (351)
|....++.++..++...-+++++..+.++...|. .+..+|.--++.+++..-+
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 4456678888888888888888888888888874 4666777666666654433
No 358
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=28.31 E-value=1.2e+02 Score=21.76 Aligned_cols=71 Identities=10% Similarity=-0.059 Sum_probs=42.9
Q ss_pred CHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 018743 256 LIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKERHCVPDNITFATMIQAYNALGMTEAAQNLEN 335 (351)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (351)
+......+.+.++... .+-.-.-.+|.++.+.|++++|.++...+... +..... ..+.+++.-|--++.
T Consensus 14 ~l~~~~~~~~~LR~qr--Hdf~NkLqvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl~ 82 (192)
T 1ixm_A 14 DTALTNELIHLLGHSR--HDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFLT 82 (192)
T ss_dssp CHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHHH
Confidence 3444555555555431 12223345688999999999999999888753 111222 556777777666665
Q ss_pred HH
Q 018743 336 KM 337 (351)
Q Consensus 336 ~~ 337 (351)
+.
T Consensus 83 K~ 84 (192)
T 1ixm_A 83 FN 84 (192)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 359
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=28.07 E-value=92 Score=18.75 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc
Q 018743 116 FEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148 (351)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (351)
.++|...|.+|+...++.|+. +|...+...+.
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~ 47 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKIVF 47 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHcc
Confidence 466777777777766665553 55555544433
No 360
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.96 E-value=1.2e+02 Score=19.01 Aligned_cols=31 Identities=6% Similarity=0.127 Sum_probs=17.6
Q ss_pred HHHHHHHhhhcCCccCHHhHHHHHHHHHhcC
Q 018743 260 VDSILRQVENSDVILDTPFFNCIISAYGQAG 290 (351)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 290 (351)
+..+.++....|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4455555555566666655555555555544
No 361
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.65 E-value=3.5e+02 Score=24.22 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=21.0
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 018743 4 LGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQ 41 (351)
Q Consensus 4 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 41 (351)
+.++|.+++|.++.++.... ..-....+...+..++.
T Consensus 162 ~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 162 LLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 56899999999998766432 11111344555555553
No 362
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.37 E-value=1.9e+02 Score=21.08 Aligned_cols=56 Identities=7% Similarity=0.043 Sum_probs=30.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCc
Q 018743 183 RAGMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGH-----IEKMEEYFKKMKHRGMKP 239 (351)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 239 (351)
+..+.+.|+-.+-+|.+.| .|....-..++.+....|. ...|...++.....|.+-
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3466777777777777776 5544444444555544443 234445555555556443
No 363
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.81 E-value=66 Score=23.32 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=11.8
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 018743 284 SAYGQAGDVEKMGELFLTMK 303 (351)
Q Consensus 284 ~~~~~~g~~~~a~~~~~~~~ 303 (351)
..|.+.|.+++|.+++++..
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHccchHHHHHHHHHHh
Confidence 35566666666666666544
No 364
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=25.70 E-value=3.1e+02 Score=23.40 Aligned_cols=74 Identities=11% Similarity=0.010 Sum_probs=52.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHh
Q 018743 213 IETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQ 288 (351)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (351)
.........++.|...|....... |-+...|+.|.-.....|+.-.|.-.|-+..-.. .|-..+...+...+.+
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 334444567889999999988874 5567889988888888888877777766655443 4567777777766654
No 365
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=25.56 E-value=3.4e+02 Score=23.70 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHH
Q 018743 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKV 260 (351)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 260 (351)
.+........+++..+-+.-+..-...++..|.+.|-.+.|.++++.+-.+-+. +...+ ..+..|+++|+++..
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 334445555555555544445556667788888888888888888777654322 33344 455567777777654
No 366
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=24.79 E-value=5.2e+02 Score=25.60 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=24.8
Q ss_pred hcCCHhHHHHHHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 018743 253 KAGLIMKVDSILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTM 302 (351)
Q Consensus 253 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 302 (351)
..+++..|.+++.++.+.. |+...|..++..+...| |+....+.+++
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~~~ 1342 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVINRM 1342 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHHhh
Confidence 4566666666666665543 35556655555554443 33333444443
No 367
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=24.78 E-value=2.1e+02 Score=21.10 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743 222 IEKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273 (351)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 273 (351)
.+.+..++..+.+.|+--|...-...+......+.+ ....+-.++.+.|+.
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 344445555555555554444444444444331111 223344455555553
No 368
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.48 E-value=2.7e+02 Score=22.20 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=36.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC
Q 018743 32 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKF-HRFDLIEKILAEMSYLGIE 97 (351)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~ 97 (351)
...++.-|...|+.++|...++.+.. .... ...+...+..++-+. ...+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~-p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELAS-PSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC-GGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-cccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 45677888888999999988888763 1111 112222222222221 1234566667777666544
No 369
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=24.45 E-value=4.4e+02 Score=24.68 Aligned_cols=157 Identities=9% Similarity=0.019 Sum_probs=84.9
Q ss_pred HHHHHHHhcCCCH---HHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 018743 140 NSMISAYGNSGNI---EKMEKWYNEFNLMG----VKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPTVVTYNIV 212 (351)
Q Consensus 140 ~~l~~~~~~~~~~---~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (351)
..++...|+.|+. +.|.+.|+.....+ ++|+.. ..+...-.+.|..++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 3456666777764 46777777765432 455543 23333344567777666677776664 234444567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHHhcC-CHhHHHHHHHH----hhhcCCccCHHhHHHHHHHH
Q 018743 213 IETFGKAGHIEKMEEYFKKMKHRG-MKPNSITYCSLVSAYSKAG-LIMKVDSILRQ----VENSDVILDTPFFNCIISAY 286 (351)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~ 286 (351)
+.+++...+.+...+++....... +++.. ...++.+..... ..+.+.+.+.. +.+ ........+..++...
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd--~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~-~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQD--ATSTINSIASNVIGQPLAWDFVQSNWKKLFQ-DYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGG--HHHHHHHHHHSTTHHHHHHHHHHHHCTTTTT-SSSSCCCCHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhh--HHHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HhCCCchHHHHHHHHH
Confidence 888888888888888777765432 33322 222333333322 23345555543 111 1222334566777766
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 018743 287 GQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 287 ~~~g~~~~a~~~~~~~~~ 304 (351)
...-..++-.+-++...+
T Consensus 842 ~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HTTCCSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHh
Confidence 665554555555555544
No 370
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.28 E-value=2.1e+02 Score=20.82 Aligned_cols=33 Identities=9% Similarity=-0.188 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 018743 185 GMYDKMRSVMDFMQKRFFFPTVVTYNIVIETFG 217 (351)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (351)
.+.+.|+-.+-+|.+.|..|....-..++.+.-
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 455555555555555554444433333333333
No 371
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=24.24 E-value=96 Score=18.02 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhc
Q 018743 115 KFEEMESSFSAMVESGGCHPDIFTLNSMISAYGN 148 (351)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (351)
..++|...|.+|+...++.|+. +|...+.....
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~~ 45 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMIIN 45 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHcc
Confidence 3566777777777666555443 55555554433
No 372
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.17 E-value=1.3e+02 Score=21.36 Aligned_cols=47 Identities=11% Similarity=-0.049 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHhhc
Q 018743 66 YTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNTIIDGYGKA 113 (351)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (351)
..++.++..++...-.+.++..+.+....| ..+..+|.--++.+++.
T Consensus 112 ~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 112 DGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQ 158 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 445666666666666666677777666666 34666665555555543
No 373
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.10 E-value=94 Score=18.51 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 018743 281 CIISAYGQAGDVEKMGELFLTMKE 304 (351)
Q Consensus 281 ~l~~~~~~~g~~~~a~~~~~~~~~ 304 (351)
.+.+-|+..|+++.|..+|+..++
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHH
Confidence 445566666666666666665543
No 374
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=23.80 E-value=1.2e+02 Score=19.89 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=33.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 018743 32 YTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKI 87 (351)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 87 (351)
|.-.|...+.+++.+-|.++++-..+ .-+...|.+.+-.|...=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe----~g~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQ----EEKRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTT----SCSHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----cCchHHHHHHHHHHHhccChHHHHHH
Confidence 34456666677777777777777776 23566677777766666666655543
No 375
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=23.67 E-value=2.8e+02 Score=23.38 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=41.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCccH--------HHHH-HHHHHHHhcCCHhHHHHHHHHh
Q 018743 207 VTYNIVIETFGKAGHIEKMEEYFKKMKHRGMKPNS--------ITYC-SLVSAYSKAGLIMKVDSILRQV 267 (351)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~-~l~~~~~~~g~~~~a~~~~~~~ 267 (351)
...+.+...|.+.++...+..+++.+...+..|+. .+|. .+...+...+++.+|...+..+
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHH
Confidence 34577889999999999999999999887663322 2232 2334455666777776666543
No 376
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.11 E-value=3.1e+02 Score=22.43 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=36.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC----------------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 177 LTKSYGRAGMYDKMRSVMDFMQKRF----------------FFPTVVTYNIVIETFGKAGHIEKMEEYFKKMK 233 (351)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (351)
++.......+.+++.+.++.+...- ..+.......+...+...|+.+.|..++++..
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4555666778888888887663321 11123344555666777788888888887765
No 377
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.99 E-value=3e+02 Score=22.27 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018743 67 TYSILIKSCTKFHRFDLIEKILAEMS 92 (351)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 92 (351)
....++.-|...|+.++|...++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 35566777778888888888888774
No 378
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.87 E-value=2e+02 Score=20.20 Aligned_cols=154 Identities=13% Similarity=0.042 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH
Q 018743 26 KPSVDVYTALVSAYGQSGLLDEAFSTINDMKSVSDCKPDVYTYSILIKSCTKFHRFDLIEKILAEMSYLGIECSAVTYNT 105 (351)
Q Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 105 (351)
.++...-...+.++.+.+..+..-.+. .+.. .++...-...+.++...++.+.. ..+..+.. .++...-..
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~----~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~ 95 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLI-KALK----DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQS 95 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT----CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHH-HHHc----CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHH
Confidence 457777777777787777654444444 4443 45666666677777777765433 34444443 356666667
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcCCCCCCHhHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018743 106 IIDGYGKAKKFEEMESSFSAMVESGGCHPDIFTLNSMISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAG 185 (351)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (351)
.+.++.+.++.+ +...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.|
T Consensus 96 a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 96 AAVALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 777777777754 4444444443 346666666677777766643 4444444443 356666666777777776
Q ss_pred CHHHHHHHHHHHH
Q 018743 186 MYDKMRSVMDFMQ 198 (351)
Q Consensus 186 ~~~~a~~~~~~~~ 198 (351)
..+ +...+..+.
T Consensus 167 ~~~-~~~~L~~~l 178 (201)
T 3ltj_A 167 GER-VRAAMEKLA 178 (201)
T ss_dssp SHH-HHHHHHHHH
T ss_pred chh-HHHHHHHHH
Confidence 643 333444433
No 379
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=22.45 E-value=75 Score=17.27 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=26.8
Q ss_pred CcccccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 018743 1 MVMLGKCKQPEQASLLFEVMLSDGLKPSVDVYTALVSAYGQSG 43 (351)
Q Consensus 1 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 43 (351)
++.|.+..=.++...+.+.=.+.|-.+....+.+....+...|
T Consensus 3 vq~Yvs~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG 45 (55)
T 1dp3_A 3 VQAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELG 45 (55)
T ss_dssp CSSCCCCTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT
T ss_pred ceeehhhHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh
Confidence 3456666666777777777667776665555665555555444
No 380
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=22.06 E-value=1e+02 Score=16.42 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHhcCCCC
Q 018743 291 DVEKMGELFLTMKERHCVP 309 (351)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~p 309 (351)
++..|+++++.+.+.|-.|
T Consensus 8 Dv~RaiELle~lq~sgevp 26 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVN 26 (53)
T ss_dssp HHHHHHHHHHHHGGGSSST
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 4555666666666555444
No 381
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.80 E-value=1.7e+02 Score=19.04 Aligned_cols=43 Identities=2% Similarity=-0.051 Sum_probs=25.8
Q ss_pred HHHHhhhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 018743 263 ILRQVENSDVILDTPFFNCIISAYGQAGDVEKMGELFLTMKER 305 (351)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 305 (351)
+|+.+....+.|+...--.-+......++++.|..+...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555555555444332222334556778888888888877753
No 382
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.58 E-value=1.1e+02 Score=18.16 Aligned_cols=32 Identities=6% Similarity=-0.078 Sum_probs=19.7
Q ss_pred CCCCCHhHHHHHHHHHhhcCChHHHHHHHHHH
Q 018743 95 GIECSAVTYNTIIDGYGKAKKFEEMESSFSAM 126 (351)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 126 (351)
+++|++.||+-+..+.-+..-..+++.+.+++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35677777777776665555555555555554
No 383
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.49 E-value=1.7e+02 Score=21.10 Aligned_cols=18 Identities=17% Similarity=-0.016 Sum_probs=10.2
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 018743 318 IQAYNALGMTEAAQNLEN 335 (351)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~ 335 (351)
+...+..|+.+-+..+++
T Consensus 181 L~~A~~~~~~~~v~~Ll~ 198 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLE 198 (240)
T ss_dssp HHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 444556777665555544
No 384
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=21.34 E-value=2e+02 Score=19.48 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=11.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 018743 319 QAYNALGMTEAAQNLENKMIA 339 (351)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~ 339 (351)
......|..+-+.-+++...+
T Consensus 140 ~~A~~~~~~~~~~~L~~~~~~ 160 (172)
T 3v30_A 140 DLAVALGYRKVQQVIENHILK 160 (172)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHH
Confidence 334455666655555555444
No 385
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.01 E-value=2.4e+02 Score=20.28 Aligned_cols=174 Identities=11% Similarity=0.013 Sum_probs=82.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhc
Q 018743 143 ISAYGNSGNIEKMEKWYNEFNLMGVKADIQTLNILTKSYGRAGMYDKMRSVMDFMQKRFFFPT---VVTYNIVIETFGKA 219 (351)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 219 (351)
+...++.|+.+....++..-...-...+..-.+ .+...+..|+.+-+..++ +.|..++ ...++.+ ...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L-~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLL----QLGVPVNDKDDAGWSPL-HIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHH-HHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHHHHHH----HhCCCCCCcCCCCCCHH-HHHHHc
Confidence 556677899998888887632211112222222 333445667766555444 4443332 2222333 333455
Q ss_pred CCHHHHHHHHHHHHHcCCCccH---HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccCHHh--HHHHHHHHHhcCCHHH
Q 018743 220 GHIEKMEEYFKKMKHRGMKPNS---ITYCSLVSAYSKAGLIMKVDSILRQVENSDVILDTPF--FNCIISAYGQAGDVEK 294 (351)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~ 294 (351)
|+.+- ++.+.+.|..++. ...+. +...+..|+.+-+..+++ .+..++... -...+...+..|+.+-
T Consensus 84 ~~~~~----v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~ 154 (231)
T 3aji_A 84 GXDEI----VKALLVKGAHVNAVNQNGCTP-LHYAASKNRHEIAVMLLE----GGANPDAKDHYDATAMHRAAAKGNLKM 154 (231)
T ss_dssp TCHHH----HHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred CHHHH----HHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 66654 4444555544432 22233 333445677765544443 333332211 1122334455666654
Q ss_pred HHHHHHHHHhcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 018743 295 MGELFLTMKERHCVPDNIT--FATMIQAYNALGMTEAAQNLEN 335 (351)
Q Consensus 295 a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~ 335 (351)
+ +.+.+.|..++... -.+.+...+..|+.+-+.-+++
T Consensus 155 v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 155 V----HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp H----HHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred H----HHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 4 44444555544321 1233444556777665544443
No 386
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.72 E-value=2.3e+02 Score=20.00 Aligned_cols=50 Identities=10% Similarity=0.015 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCc
Q 018743 223 EKMEEYFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVI 273 (351)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 273 (351)
+.+..++..+.+.|+--|...-...+......|.+ .-..+-.++.+.|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 34445555555555554444444444444433322 123344455555543
No 387
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=20.30 E-value=2.2e+02 Score=22.74 Aligned_cols=75 Identities=1% Similarity=0.018 Sum_probs=41.0
Q ss_pred HHHHHHHcCCCccHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCccC-HHhHH--HHHH----HHHhcCCHHHHHHHHH
Q 018743 228 YFKKMKHRGMKPNSITYCSLVSAYSKAGLIMKVDSILRQVENSDVILD-TPFFN--CIIS----AYGQAGDVEKMGELFL 300 (351)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~--~l~~----~~~~~g~~~~a~~~~~ 300 (351)
++..+.+.|+.|...++.-++..+.+.=.++.+..+++.+...|.... ...+- +++. ......++++...+++
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~ 310 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQ 310 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 444455566666666666666666666667777777777766553322 11111 1111 1223466666666665
Q ss_pred HH
Q 018743 301 TM 302 (351)
Q Consensus 301 ~~ 302 (351)
.+
T Consensus 311 ~~ 312 (345)
T 2qfz_A 311 NL 312 (345)
T ss_dssp SC
T ss_pred cC
Confidence 44
Done!