BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018745
(351 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
Length = 476
Score = 602 bits (1552), Expect = e-171, Method: Compositional matrix adjust.
Identities = 291/333 (87%), Positives = 308/333 (92%), Gaps = 4/333 (1%)
Query: 6 PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWK 63
PLS NGSGA A+ VPS++FFG+SLKK +++ P K S +FKI A E+ E++QT KD+WK
Sbjct: 15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWK 72
Query: 64 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLY 123
GLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG Y
Sbjct: 73 GLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFY 132
Query: 124 IAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183
IAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 133 IAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 192
Query: 184 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNA 243
ELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 193 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 252
Query: 244 TLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 303
TLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR
Sbjct: 253 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 312
Query: 304 IGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
IGVCKGIFR DNVADDDIVKLVDTFPGQSI F
Sbjct: 313 IGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFF 345
>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1
Length = 435
Score = 595 bits (1533), Expect = e-169, Method: Compositional matrix adjust.
Identities = 286/333 (85%), Positives = 306/333 (91%), Gaps = 4/333 (1%)
Query: 6 PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWK 63
PLS NGSGA A+ VPS++FFG+SLKK +++ P K S +FKI A E+ E++QT KD+WK
Sbjct: 15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWK 72
Query: 64 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLY 123
GLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG Y
Sbjct: 73 GLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFY 132
Query: 124 IAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183
IAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 133 IAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 192
Query: 184 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNA 243
ELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 193 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 252
Query: 244 TLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 303
TLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR
Sbjct: 253 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 312
Query: 304 IGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
IGVCKGIFR DNV ++DIVK+VD FPGQSI F
Sbjct: 313 IGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFF 345
>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Malus domestica GN=RCA PE=2 SV=1
Length = 437
Score = 577 bits (1486), Expect = e-164, Method: Compositional matrix adjust.
Identities = 280/331 (84%), Positives = 301/331 (90%)
Query: 6 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGL 65
P + NGS ++ SVPSS+F G+SLKKV+SR SKV S S +I A VDE+KQT KDRWKGL
Sbjct: 15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGL 74
Query: 66 AYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIA 125
A+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN +DG YIA
Sbjct: 75 AFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIA 134
Query: 126 PAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185
PAFMDKLVVHITKNFM+LPN+KVPLILGIWGGKGQGKSFQCELVFAKM I+PIMMSAGEL
Sbjct: 135 PAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGEL 194
Query: 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATL 245
ESGNAGEPAKLIRQRYREAADII+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATL
Sbjct: 195 ESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATL 254
Query: 246 MNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 305
MNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG
Sbjct: 255 MNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 314
Query: 306 VCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
VC GIFR+DNVA +DIVKLVDTFPGQSI F
Sbjct: 315 VCIGIFRSDNVAKEDIVKLVDTFPGQSIDFF 345
>sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Vigna radiata var. radiata GN=RCA PE=2 SV=2
Length = 439
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 278/334 (83%), Positives = 298/334 (89%), Gaps = 6/334 (1%)
Query: 7 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKKDRW 62
L+ NGSGA S P+S+FFGTSLKK V+SR+P SKV + SFKI A E++E++QT KDRW
Sbjct: 16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRW 75
Query: 63 KGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGL 122
KGLAYD SDDQQDITRGKG VD LFQAPM GTHYAVMSSY+Y+S GLR LDN DG
Sbjct: 76 KGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGF 133
Query: 123 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182
YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA
Sbjct: 134 YIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 193
Query: 183 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVN 242
GELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVN
Sbjct: 194 GELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVN 253
Query: 243 ATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 302
ATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+D
Sbjct: 254 ATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD 313
Query: 303 RIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
R+GVCKGIFR D V ++DI KLVDTFPGQSI F
Sbjct: 314 RVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFF 347
>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Arabidopsis thaliana GN=RCA PE=1 SV=2
Length = 474
Score = 570 bits (1469), Expect = e-162, Method: Compositional matrix adjust.
Identities = 278/346 (80%), Positives = 298/346 (86%), Gaps = 11/346 (3%)
Query: 1 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAE 50
MAAAV PLS NGSG+ A S P+S+F G + VS +K + SFK+ A
Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA- 59
Query: 51 VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGL 110
V E+KQT DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGL
Sbjct: 60 VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGL 119
Query: 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVF 170
R YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQCELV
Sbjct: 120 RQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVM 179
Query: 171 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGG 230
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGG 239
Query: 231 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 290
TTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGR 299
Query: 291 MEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
MEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSI F
Sbjct: 300 MEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFF 345
>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Nicotiana tabacum PE=1 SV=1
Length = 442
Score = 565 bits (1456), Expect = e-160, Method: Compositional matrix adjust.
Identities = 272/335 (81%), Positives = 291/335 (86%), Gaps = 4/335 (1%)
Query: 6 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDR 61
PLS N S A TSVPS++FFG +LKKV + + KV + S +I AE VD KQT DR
Sbjct: 15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDR 74
Query: 62 WKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDG 121
WKGL D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG
Sbjct: 75 WKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDG 134
Query: 122 LYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181
YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KMGINPIMMS
Sbjct: 135 FYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 194
Query: 182 AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 241
AGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMV
Sbjct: 195 AGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMV 254
Query: 242 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 301
NATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct: 255 NATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 314
Query: 302 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
DRIGVC GIFR DNV +D+VK+VD FPGQSI F
Sbjct: 315 DRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFF 349
>sp|Q01587|RCA_CUCSA Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Cucumis sativus PE=2 SV=1
Length = 413
Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/329 (81%), Positives = 290/329 (88%), Gaps = 1/329 (0%)
Query: 8 SFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAY 67
+ N S VP+S+F G+ LK VSSR SK+ + +FKI AE DE KQT+KD+W+GLA+
Sbjct: 15 TLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAF 73
Query: 68 DESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPA 127
D SDDQQDITRGKG D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPA
Sbjct: 74 DTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPA 133
Query: 128 FMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 187
FMDKL VHI KNF++LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELES
Sbjct: 134 FMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 193
Query: 188 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN 247
GNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMN
Sbjct: 194 GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMN 253
Query: 248 IADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 307
IADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C
Sbjct: 254 IADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGIC 313
Query: 308 KGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
GIFR D V +DIVKLVDTFPGQSI F
Sbjct: 314 TGIFRTDGVPFEDIVKLVDTFPGQSIDFF 342
>sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1
Length = 439
Score = 562 bits (1448), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/339 (79%), Positives = 293/339 (86%), Gaps = 4/339 (1%)
Query: 2 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQT 57
A PLS N S A TSVPS++FFG +LKKV + + KV + S +I AE D KQT
Sbjct: 11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQT 70
Query: 58 KKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDN 117
DRWKGL D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DN
Sbjct: 71 YSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDN 130
Query: 118 TIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 177
T+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINP
Sbjct: 131 TLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINP 190
Query: 178 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 237
IMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCL INDLDAGAGRMGGTTQYTVN
Sbjct: 191 IMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVN 250
Query: 238 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 297
NQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA
Sbjct: 251 NQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 310
Query: 298 PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
PTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSI F
Sbjct: 311 PTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFF 349
>sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Solanum pennellii PE=2 SV=1
Length = 459
Score = 561 bits (1447), Expect = e-159, Method: Compositional matrix adjust.
Identities = 267/337 (79%), Positives = 297/337 (88%), Gaps = 5/337 (1%)
Query: 2 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKK 59
A+ PLS N S A TSVPS++FFG SLKKV ++ + KV + + ++ A EVDE TK+
Sbjct: 11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKE 67
Query: 60 DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTI 119
DRWKGL + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +
Sbjct: 68 DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKL 127
Query: 120 DGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179
DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIM
Sbjct: 128 DGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIM 187
Query: 180 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQ 239
MSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQ
Sbjct: 188 MSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQ 247
Query: 240 MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 299
MVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 248 MVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307
Query: 300 REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
REDRIGVCKGIFR DNV ++ +VK+VD+FPGQSI F
Sbjct: 308 REDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFF 344
>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1
Length = 441
Score = 554 bits (1428), Expect = e-157, Method: Compositional matrix adjust.
Identities = 274/334 (82%), Positives = 295/334 (88%), Gaps = 4/334 (1%)
Query: 7 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKKDRW 62
L+ NGSG S PSS+FFGTSLKKV SSR+P SK+ S SFKI A E++E +QT+ DRW
Sbjct: 16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRW 75
Query: 63 KGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGL 122
+GLAYD SDDQQDITRGKG VDSLFQAPM GTHYAV+SS+ Y+S GLR YN DN DG
Sbjct: 76 RGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGF 135
Query: 123 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182
YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSA
Sbjct: 136 YIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSA 195
Query: 183 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVN 242
GELESGNAGEPAKLIRQRYREA+D+IKKGKMC L INDLDAGAGR+GGTTQYTVNNQMVN
Sbjct: 196 GELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVN 255
Query: 243 ATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 302
ATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED
Sbjct: 256 ATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 315
Query: 303 RIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
RIGVCKGIFR D V + DIV+LVD PGQSI F
Sbjct: 316 RIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFF 349
>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2
Length = 466
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 275/340 (80%), Positives = 296/340 (87%), Gaps = 8/340 (2%)
Query: 1 MAAAVPLSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSA--SFKITA-EVDENKQ 56
MAAA + GA S P++ F G LKK V+S + S FK+ A E+DE KQ
Sbjct: 1 MAAAFSSTV---GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQ 56
Query: 57 TKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLD 116
T +DRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ D
Sbjct: 57 TDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFD 116
Query: 117 NTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176
NT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN
Sbjct: 117 NTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176
Query: 177 PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTV 236
PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTV
Sbjct: 177 PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTV 236
Query: 237 NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 296
NNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW
Sbjct: 237 NNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 296
Query: 297 APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
APTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSI F
Sbjct: 297 APTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFF 336
>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Zea mays GN=RCA1 PE=2 SV=3
Length = 433
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 269/344 (78%), Positives = 291/344 (84%), Gaps = 11/344 (3%)
Query: 1 MAAAVPLSFNGSGAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVD 52
MAAA + GA S P+ SSF G L K VS+ + S ++ FK A EVD
Sbjct: 1 MAAAFSSTV---GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVD 57
Query: 53 ENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRT 112
E KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++
Sbjct: 58 ETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKS 117
Query: 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK 172
YN DN +DG YIA FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAK
Sbjct: 118 YNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAK 177
Query: 173 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 232
MGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTT
Sbjct: 178 MGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTT 237
Query: 233 QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292
QYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 238 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRME 297
Query: 293 KFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
KFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPGQSI F
Sbjct: 298 KFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFF 341
>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1
Length = 425
Score = 539 bits (1389), Expect = e-152, Method: Compositional matrix adjust.
Identities = 264/327 (80%), Positives = 283/327 (86%), Gaps = 7/327 (2%)
Query: 13 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDE 69
GA S P+ F G +K +K+ S ++ A E+D+ KQT DRWKGLAYD
Sbjct: 10 GAPASTPTI-FLGKKVKNYYH--GGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDI 66
Query: 70 SDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFM 129
SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFM
Sbjct: 67 SDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFM 126
Query: 130 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189
DKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN
Sbjct: 127 DKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 186
Query: 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249
GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIA
Sbjct: 187 -GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 245
Query: 250 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 309
D PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG
Sbjct: 246 DAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 305
Query: 310 IFRNDNVADDDIVKLVDTFPGQSIGKF 336
IFR DNV D+ +V+LVDTFPGQSI F
Sbjct: 306 IFRTDNVPDEAVVRLVDTFPGQSIDFF 332
>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1
Length = 464
Score = 534 bits (1375), Expect = e-151, Method: Compositional matrix adjust.
Identities = 262/339 (77%), Positives = 288/339 (84%), Gaps = 7/339 (2%)
Query: 1 MAAAVPLSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKK 59
MAAA + GA S P++ F G LKK V+S + S + + T EN K+
Sbjct: 1 MAAAFSSTV---GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKR 56
Query: 60 --DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDN 117
D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DN
Sbjct: 57 NTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDN 116
Query: 118 TIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 177
T+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINP
Sbjct: 117 TMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINP 176
Query: 178 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN 237
IMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVN
Sbjct: 177 IMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVN 236
Query: 238 NQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 297
NQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWA
Sbjct: 237 NQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWA 296
Query: 298 PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
PTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSI F
Sbjct: 297 PTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFF 335
>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Spinacia oleracea PE=1 SV=2
Length = 472
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/336 (73%), Positives = 277/336 (82%), Gaps = 4/336 (1%)
Query: 2 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKKD 60
A PL+ NGS A SVP+S F G+SLKK ++ R P S S + +T + EN++ D
Sbjct: 11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTD 67
Query: 61 RWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTID 120
+W LA D SDDQ DI RGKG VDSLFQAP GTH + SS++Y SQGLR Y++DN +
Sbjct: 68 KWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLG 127
Query: 121 GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180
YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMM
Sbjct: 128 DFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMM 187
Query: 181 SAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQM 240
SAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQM
Sbjct: 188 SAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQM 247
Query: 241 VNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 300
VNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR
Sbjct: 248 VNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 307
Query: 301 EDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
EDRIGVC GIF+ D V + +VKLVD FPGQSI F
Sbjct: 308 EDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFF 343
>sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Chlamydomonas reinhardtii PE=2 SV=1
Length = 408
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/307 (67%), Positives = 238/307 (77%), Gaps = 9/307 (2%)
Query: 33 SRIPPSKVPSASFKITAEVDENKQTKKDRWKGL--AYDESDDQQDITRGKGAVDSLFQAP 90
+R+ V A ++ A + + RW+ + D SDDQQDITRG+ VD LFQ
Sbjct: 18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGG 73
Query: 91 MGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVP 149
G G TH AV+SS +Y+SQ ++N N DG YI+PAF+DK+ +HI KNFM LP IKVP
Sbjct: 74 FGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVP 131
Query: 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 209
LILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIK
Sbjct: 132 LILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIK 191
Query: 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269
KG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y EE PRV
Sbjct: 192 KGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRV 251
Query: 270 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFP 329
PI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV ++ LVDTFP
Sbjct: 252 PIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFP 311
Query: 330 GQSIGKF 336
GQSI F
Sbjct: 312 GQSIDFF 318
>sp|Q06721|RCA_ANASC Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena
sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1
Length = 415
Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 147/215 (68%), Positives = 174/215 (80%), Gaps = 1/215 (0%)
Query: 123 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182
YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 183 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 241
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 242 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 301
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRD 183
Query: 302 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
+++G+ GIF D ++ D+ KLVD+FP QSI F
Sbjct: 184 EKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFF 218
>sp|P58555|RCA_NOSS1 Ribulose bisphosphate carboxylase/oxygenase activase OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rca PE=3 SV=1
Length = 414
Score = 312 bits (800), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/215 (68%), Positives = 174/215 (80%), Gaps = 1/215 (0%)
Query: 123 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182
YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 183 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 241
GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 242 NATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 301
NATLMNIADNPT VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 302 DRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
D++G+ GIF D ++ +I +LVDTFP QSI F
Sbjct: 184 DKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFF 218
>sp|P85086|RCA_ARAHY Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1
Length = 140
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 127/273 (46%), Positives = 128/273 (46%), Gaps = 137/273 (50%)
Query: 64 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLY 123
GLAYD SDDQQDITRG VDSLFQAPM GTHYAVMSSY+YISQGLR
Sbjct: 1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------ 46
Query: 124 IAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183
VPLILGIWGGK MGINPIMMSAG
Sbjct: 47 ------------------------VPLILGIWGGK--------------MGINPIMMSAG 68
Query: 184 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNA 243
ELESGNAGEPA KMCCL INDLDAGAG
Sbjct: 69 ELESGNAGEPA-----------------KMCCLFINDLDAGAG----------------- 94
Query: 244 TLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 303
RVPIIVTGNDFSTLYAPLI R
Sbjct: 95 ------------------------RVPIIVTGNDFSTLYAPLI----------------R 114
Query: 304 IGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336
IGVC GIFR LVDTFPGQSI F
Sbjct: 115 IGVCTGIFR-----------LVDTFPGQSIDFF 136
>sp|P85111|RCA_VITSX Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Vitis sp. PE=1 SV=1
Length = 62
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 41/61 (67%), Gaps = 17/61 (27%)
Query: 172 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGT 231
+MGINPIMMSAGELESGNAGEPA KMCCL INDLDAGAGR+G
Sbjct: 15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVC 57
Query: 232 T 232
T
Sbjct: 58 T 58
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 64 GLAYDESDDQQDITR 78
GLAYD SDDQQDITR
Sbjct: 1 GLAYDISDDQQDITR 15
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 204
NIK P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 485 NIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 544
Query: 205 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264
+ C + +++D+ A R GG V ++V+ L +L G+ E
Sbjct: 545 RQVAP----CVIFFDEIDSLAPRRGGIGDSHVTERVVSQLL---------TELDGL---E 588
Query: 265 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADD-DI 321
E V +I N + L+R GR+E+ + P ++ R+ + K R +ADD +I
Sbjct: 589 ELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNI 648
Query: 322 VKLVDTFPGQS 332
+L + G S
Sbjct: 649 EELAEKTEGYS 659
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 491 LFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA----RQSAP 546
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + +++DA A + G V +++VN L +L GM E P+ +++
Sbjct: 547 CIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----EEPKDVVVI 593
Query: 274 TGNDFSTLYAP-LIRDGRMEKFYWAPTRED--RIGVCKGIFRNDNVADD 319
+ + P L+R GR+++ P ++ R+ + K R+ N+A+D
Sbjct: 594 AATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSMNLAED 642
>sp|Q2KIW6|PRS10_BOVIN 26S protease regulatory subunit 10B OS=Bos taurus GN=PSMC6 PE=2
SV=1
Length = 389
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 274 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 327
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 328 FPGQSIG 334
F G +G
Sbjct: 338 FNGADLG 344
>sp|P62335|PRS10_SPETR 26S protease regulatory subunit 10B OS=Spermophilus
tridecemlineatus GN=PSMC6 PE=2 SV=1
Length = 389
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 274 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 327
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 328 FPGQSI 333
F G +
Sbjct: 338 FNGADL 343
>sp|P62334|PRS10_MOUSE 26S protease regulatory subunit 10B OS=Mus musculus GN=Psmc6 PE=1
SV=1
Length = 389
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 274 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 327
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 328 FPGQSI 333
F G +
Sbjct: 338 FNGADL 343
>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1
SV=1
Length = 389
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIM 277
Query: 274 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 327
N TL L+R GR+++ P + R+ + K I ++ + + IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 328 FPGQSI 333
F G +
Sbjct: 338 FNGADL 343
>sp|Q54CS8|PEX6_DICDI Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6
PE=3 SV=1
Length = 1201
Score = 48.1 bits (113), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/181 (24%), Positives = 89/181 (49%), Gaps = 21/181 (11%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ + + + +N + + EL + GE K IR+ + +A ++ K
Sbjct: 957 LFGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEKNIREIFNKA----RQAKP 1012
Query: 214 CCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272
C + ++LD+ A R G V +++V+ L +L GM +++ V II
Sbjct: 1013 CVIFFDELDSLAPSRGNGADSGGVMDRVVSQLL---------AELDGM---QKSSDVFII 1060
Query: 273 VTGNDFSTLYAPLIRDGRMEKFYW---APTREDRIGVCKGIFRNDNVADD-DIVKLVDTF 328
N L + L+R GR+++ + + +E++ + + + R N+ADD D+ K+V+
Sbjct: 1061 GATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENC 1120
Query: 329 P 329
P
Sbjct: 1121 P 1121
>sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A OS=Arabidopsis
thaliana GN=RPT4A PE=2 SV=1
Length = 399
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
++ + C + ++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 319
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 320 DIVKLVDTFPGQSI 333
IVKL + F G +
Sbjct: 336 AIVKLAEGFNGADL 349
>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPT4 PE=1 SV=4
Length = 437
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
K+ + C + ++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMEL-----LTQMDGFDNLGQ 320
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 298
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>sp|Q5UT56|PAN2_HALVD Proteasome-activating nucleotidase 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan2 PE=2 SV=1
Length = 412
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 20/189 (10%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
+ I+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVVFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 296
Query: 274 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD----DDIVKLVDT 327
N F L ++R GR ++ P E R + R+ NVAD D + + +D
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVPKPAVEGRRHILDIHTRDMNVADDVDLDALAEELDD 356
Query: 328 FPGQSIGKF 336
+ G I
Sbjct: 357 YSGADIASL 365
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 189 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 244
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 245 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 294
Query: 274 TGNDFSTLYAPLIRDGRMEKFYWAPT-REDRIGVCKGIF-RNDNVADD-DIVKLVD 326
N F L ++R GR ++ P ED + I R NV+DD D V+L +
Sbjct: 295 ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMNVSDDVDFVELAE 350
>sp|Q9MAK9|PS10B_ARATH 26S protease regulatory subunit S10B homolog B OS=Arabidopsis
thaliana GN=RPT4B PE=2 SV=1
Length = 399
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
++ + C + ++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADD 319
+V +I+ N L L+R GR+++ P + R+ + K GI ++ + +
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYE 335
Query: 320 DIVKLVDTFPGQSI 333
IVKL + F G +
Sbjct: 336 AIVKLGEGFNGADL 349
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis thaliana
GN=CDC48B PE=2 SV=1
Length = 603
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 13/165 (7%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
+K P L ++G G GK+ V + + I++S + +AGE K++R+ + EA+
Sbjct: 53 LKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEAS 112
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
K + I+++D R + V TLM+ ++ P+
Sbjct: 113 SHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKPS----------SS 161
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCK 308
PRV ++ + N + L R GR + P EDR+ + +
Sbjct: 162 APRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQ 206
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 18/158 (11%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ + V + + + + EL GE A+L+R+ + D+ KK
Sbjct: 217 LYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 272
Query: 214 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272
+ I+++DA GA R T T ++ V TLM + L GM E V II
Sbjct: 273 TIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL--------LAGMDGFETRGDVKII 321
Query: 273 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCK 308
N L L+R GR ++ P E R+ + K
Sbjct: 322 GATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILK 359
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ V A +G+N + + + + GE A++IR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYA- 221
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
K+ + C + ++++DA GR ++ T ++ + TLM + + G
Sbjct: 222 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 270
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 298
+ II+ N TL L+R GR+++ P
Sbjct: 271 --QTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
>sp|P46463|PEX1_PICPA Peroxisome biosynthesis protein PAS1 OS=Komagataella pastoris
GN=PEX1 PE=3 SV=1
Length = 1157
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 37/228 (16%)
Query: 105 YISQGLRTYNLDNT------IDGLYIAPAFMDKLVVHITKN---FMSLPNIKVPLILGIW 155
YI Q LR L + I GL A + + + + TK F S P +++ + ++
Sbjct: 781 YIPQSLRGVKLQKSDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCP-LRLRSGILLY 839
Query: 156 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC 215
G G GK+ V A+ G+N I + E+ + G + +R+ + A + K C
Sbjct: 840 GYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERA----QAAKPCI 895
Query: 216 LMINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271
L ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R +
Sbjct: 896 LFFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRPDL 947
Query: 272 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA 317
I + L+R GR++K P +DR+ + + + RN NV+
Sbjct: 948 IDSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVS 986
>sp|Q9HRW6|PAN1_HALSA Proteasome-activating nucleotidase 1 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=pan1 PE=3
SV=2
Length = 407
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 188 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 243
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
+ I+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 293
Query: 274 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 312
N F L ++R GR ++ P +G + IFR
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 330
>sp|D3EZK2|FTSH3_CONWI ATP-dependent zinc metalloprotease FtsH 3 OS=Conexibacter woesei
(strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)
GN=ftsH3 PE=3 SV=1
Length = 749
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 15/187 (8%)
Query: 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 206
K+P + + G G GK+ V + G+ MSA E G A +R +R+A
Sbjct: 272 KIPKGVLLSGQPGTGKTLLARAVAGEAGVPFFSMSASEFVEMIVGVGASRVRDLFRQA-- 329
Query: 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 266
K+ + I++LDA GG N TL I L M E
Sbjct: 330 --KEAAPAIIFIDELDAIGRARGGGRGSFGGNDEREQTLNQI--------LTEMDGFEPT 379
Query: 267 PRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD-DIVK 323
V +I N L A L+R GR ++ AP R R+ + K R+ +ADD D+
Sbjct: 380 TAVIVIAATNRPEILDAALLRPGRFDRRVTVAAPDRNGRLMILKVHTRSVPLADDVDLES 439
Query: 324 LVDTFPG 330
+ + PG
Sbjct: 440 IASSTPG 446
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 189 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 244
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
C + ++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 245 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 294
Query: 274 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCK----GIFRNDNVADDDIVKLVDT 327
N TL L+R GR+++ P + R+ + K I ++ + + +VKL D
Sbjct: 295 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 354
Query: 328 F 328
F
Sbjct: 355 F 355
>sp|B8D065|FTSH_HALOH ATP-dependent zinc metalloprotease FtsH OS=Halothermothrix orenii
(strain H 168 / OCM 544 / DSM 9562) GN=ftsH PE=3 SV=1
Length = 630
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 27/192 (14%)
Query: 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 206
KVP + + G G GK+ V + G+ ++S + G A +R + +
Sbjct: 194 KVPKGVLLVGPPGTGKTLLARAVAGEAGVPFFIISGSDFVEMFVGVGASRVRDLFEQG-- 251
Query: 207 IIKKGKMCCLMINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 261
KK C + I++LDA GAG GG + Q +N L V++ G
Sbjct: 252 --KKNAPCIIFIDELDAVGRQRGAGLGGGHDE---REQTLNQLL---------VEMDGF- 296
Query: 262 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD 319
E N + ++ N L L+R GR ++ P + R+G+ K RN VADD
Sbjct: 297 --EPNEGIIVMAATNRPDVLDPALLRPGRFDRQVVVDKPDVKGRMGILKIHLRNKPVADD 354
Query: 320 -DIVKLVDTFPG 330
D+ L PG
Sbjct: 355 VDVEVLAKRTPG 366
>sp|Q54PJ1|PRS10_DICDI 26S protease regulatory subunit 10B OS=Dictyostelium discoideum
GN=psmC6 PE=1 SV=1
Length = 393
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 205
IK P + ++G G GK+ + + + N + + + + GE A++IR+ + A
Sbjct: 168 IKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265
D + C + ++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DT 273
Query: 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCK----GIFRNDNVADD 319
+V II+ N L L+R GR+++ P + R+ V K I ++ +V +
Sbjct: 274 LSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYE 333
Query: 320 DIVKLVDTF 328
I KL D F
Sbjct: 334 AIAKLADGF 342
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ V + + + + EL GE A+L+R+ + D+ K+
Sbjct: 192 LYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELF----DLAKQRAP 247
Query: 214 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272
+ I+++DA GA R TT ++ V TLM + ++ G N+ + V I+
Sbjct: 248 SIIFIDEIDAIGAHRNDSTTS---GDREVQRTLMQL-----LAEMDGFDNRGD---VKIV 296
Query: 273 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 319
N L L+R GR ++ P + R+ + K + N+ +D
Sbjct: 297 AATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGED 345
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 18/169 (10%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ + V + + EL GE A+L+R+ + D+ K+
Sbjct: 192 LYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELF----DLAKEKAP 247
Query: 214 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272
+ I+++DA GA R T T ++ V TLM + L M E V II
Sbjct: 248 SIVFIDEIDAIGASR---TEAMTSGDREVQRTLMQL--------LAAMDGFEPRGDVKII 296
Query: 273 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCKGIFRNDNVADD 319
N L A L+R GR ++ P E R + K R N+++D
Sbjct: 297 GATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSED 345
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 18/168 (10%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 526 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 581
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
+ +++D+ A G +T V ++VN L A+ V L NK V II
Sbjct: 582 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLL---AEMDGIVPL----NK-----VVIIA 629
Query: 274 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 319
N L L+R GR ++ + P + R + K +N +A+D
Sbjct: 630 ATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAED 677
>sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tbp1 PE=3 SV=1
Length = 438
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 19/171 (11%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ A+ + ++A +L G+ AKL+ R+A + K+
Sbjct: 224 MFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLV----RDAFALAKEKSP 279
Query: 214 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272
+ I++LDA G R ++ V T++ + + QL G + + RV +I
Sbjct: 280 AIIFIDELDAIGTKRFDSE---KAGDREVQRTMLELLN-----QLDGFSS---DDRVKVI 328
Query: 273 VTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADDDI 321
N TL L+R GR+++ + P E R+G+ + I DDDI
Sbjct: 329 AATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILR-IHSRKMAIDDDI 378
>sp|Q9HPF0|CDCH_HALSA Protein CdcH OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=cdcH PE=3 SV=1
Length = 742
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAP---- 556
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273
+ ++LD+ A G T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDSLAPGRGQTGGNNVSERVVNQLL---------TELDGLEEMEE---VMVIA 604
Query: 274 TGNDFSTLYAPLIRDGRMEKF 294
N + LIR GR ++
Sbjct: 605 ATNRPDIIDPALIRSGRFDRL 625
>sp|O05209|VAT_THEAC VCP-like ATPase OS=Thermoplasma acidophilum (strain ATCC 25905 /
DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=vat
PE=1 SV=1
Length = 745
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 34/226 (15%)
Query: 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 173
+ T++ + P +L + +K F+ ++G G GK+ + V +
Sbjct: 478 EIKETVELPLLKPDVFKRLGIRPSKGFL------------LYGPPGVGKTLLAKAVATES 525
Query: 174 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ 233
N I + E+ S GE K IR+ +++A K+ + ++++D+ A R G T+
Sbjct: 526 NANFISIKGPEVLSKWVGESEKAIREIFKKA----KQVAPAIVFLDEIDSIAPRRGTTSD 581
Query: 234 YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 293
V ++VN L + L G+ E V +I N + L+R GR +K
Sbjct: 582 SGVTERIVNQLLTS---------LDGI---EVMNGVVVIGATNRPDIMDPALLRAGRFDK 629
Query: 294 FYWA--PTREDRIGVCKGIFRNDNVADD----DIVKLVDTFPGQSI 333
+ P +E R+ + K +N +A D DI + + + G +
Sbjct: 630 LIYIPPPDKEARLSILKVHTKNMPLAPDVDLNDIAQRTEGYVGADL 675
>sp|O28303|PAN_ARCFU Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=pan PE=1 SV=1
Length = 398
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 20/170 (11%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ + V + I + E GE A+L+R+ ++ A K+
Sbjct: 180 LYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKYIGEGARLVREVFQLA----KEKAP 235
Query: 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR--VPI 271
+ I++LDA A R T T ++ V T+M + +L G +PR V +
Sbjct: 236 SIIFIDELDAIAARR--TNSDTSGDREVQRTMMQL-----LAELDGF-----DPRGDVKV 283
Query: 272 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD 319
I N L ++R GR ++ PT E RI + K R +A+D
Sbjct: 284 IGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAED 333
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 22/187 (11%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ A+ + ++ +L G+ AKL+R ++ + K+
Sbjct: 210 LYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQ----LAKEKAP 265
Query: 214 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272
C + I+++DA G R Q L+N QL G + E R+ +I
Sbjct: 266 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE---RIKVI 314
Query: 273 VTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD----DIVKLVD 326
N L L+R GR+++ + PT E R + + R NV D ++ + D
Sbjct: 315 AATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTD 374
Query: 327 TFPGQSI 333
F G +
Sbjct: 375 DFNGAQL 381
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 22/187 (11%)
Query: 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213
++G G GK+ A+ + ++ +L G+ AKL+R ++ + K+
Sbjct: 210 LYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQ----LAKEKAP 265
Query: 214 CCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272
C + I+++DA G R Q L+N QL G + E R+ +I
Sbjct: 266 CIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE---RIKVI 314
Query: 273 VTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCKGIFRNDNVADD----DIVKLVD 326
N L L+R GR+++ + PT E R + + R NV D ++ + D
Sbjct: 315 AATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTD 374
Query: 327 TFPGQSI 333
F G +
Sbjct: 375 DFNGAQL 381
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,648,095
Number of Sequences: 539616
Number of extensions: 6056201
Number of successful extensions: 14481
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 14370
Number of HSP's gapped (non-prelim): 306
length of query: 351
length of database: 191,569,459
effective HSP length: 118
effective length of query: 233
effective length of database: 127,894,771
effective search space: 29799481643
effective search space used: 29799481643
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)