Query 018745
Match_columns 351
No_of_seqs 313 out of 1826
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:41:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00020 ribulose bisphosphate 100.0 8.2E-79 1.8E-83 589.7 25.4 335 3-341 5-341 (413)
2 KOG0651 26S proteasome regulat 100.0 2.3E-57 5E-62 427.2 6.0 314 5-333 14-342 (388)
3 COG1222 RPT1 ATP-dependent 26S 100.0 3.2E-44 7E-49 344.2 12.3 179 143-335 179-363 (406)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 2.2E-39 4.7E-44 326.4 18.3 277 41-336 117-403 (802)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 4.4E-40 9.4E-45 331.4 13.1 206 114-336 509-725 (802)
6 KOG0730 AAA+-type ATPase [Post 100.0 1.4E-38 3.1E-43 323.7 13.8 205 114-335 432-643 (693)
7 KOG0734 AAA+-type ATPase conta 100.0 1.3E-36 2.8E-41 302.5 12.0 216 109-343 297-523 (752)
8 KOG0736 Peroxisome assembly fa 100.0 4.9E-36 1.1E-40 308.3 13.4 205 115-333 671-884 (953)
9 KOG0727 26S proteasome regulat 100.0 1.4E-34 3E-39 267.1 10.8 181 142-336 182-368 (408)
10 KOG0652 26S proteasome regulat 100.0 5.7E-34 1.2E-38 264.1 12.2 196 126-335 181-383 (424)
11 KOG0738 AAA+-type ATPase [Post 100.0 2.1E-33 4.4E-38 271.6 12.8 205 115-335 211-423 (491)
12 KOG0728 26S proteasome regulat 100.0 4.3E-33 9.4E-38 257.0 12.8 179 143-335 175-359 (404)
13 KOG0731 AAA+-type ATPase conta 100.0 2.5E-33 5.4E-38 292.3 12.5 209 113-336 308-525 (774)
14 KOG0726 26S proteasome regulat 100.0 1.1E-33 2.5E-38 265.3 8.3 180 143-336 213-398 (440)
15 KOG0735 AAA+-type ATPase [Post 100.0 4.4E-33 9.5E-38 284.5 12.8 173 145-334 697-875 (952)
16 KOG0739 AAA+-type ATPase [Post 100.0 1.2E-32 2.6E-37 259.1 10.3 204 115-336 132-342 (439)
17 CHL00195 ycf46 Ycf46; Provisio 100.0 1.6E-31 3.4E-36 272.2 17.3 174 144-335 254-435 (489)
18 COG0465 HflB ATP-dependent Zn 100.0 6.3E-32 1.4E-36 277.2 14.3 223 91-334 130-360 (596)
19 COG0464 SpoVK ATPases of the A 100.0 1.1E-31 2.5E-36 274.4 15.8 175 145-336 272-454 (494)
20 KOG0729 26S proteasome regulat 100.0 2.6E-32 5.6E-37 253.8 8.0 177 144-334 206-388 (435)
21 KOG0741 AAA+-type ATPase [Post 100.0 5E-32 1.1E-36 269.7 6.4 187 144-344 251-453 (744)
22 PTZ00454 26S protease regulato 100.0 7.8E-31 1.7E-35 261.5 14.1 210 113-336 142-358 (398)
23 PRK03992 proteasome-activating 100.0 1.5E-30 3.2E-35 259.3 15.1 211 112-336 127-344 (389)
24 TIGR01243 CDC48 AAA family ATP 100.0 2.5E-30 5.5E-35 276.0 16.8 177 143-335 481-663 (733)
25 KOG0737 AAA+-type ATPase [Post 100.0 1.4E-30 3.1E-35 251.2 11.8 212 106-334 82-301 (386)
26 COG1223 Predicted ATPase (AAA+ 100.0 9.1E-30 2E-34 235.9 12.5 183 134-334 133-324 (368)
27 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.3E-29 2.8E-34 280.5 13.5 173 144-336 1625-1849(2281)
28 TIGR01241 FtsH_fam ATP-depende 100.0 1.5E-29 3.3E-34 259.1 13.1 207 111-335 50-266 (495)
29 TIGR03689 pup_AAA proteasome A 100.0 5.6E-29 1.2E-33 253.8 16.5 211 113-336 179-402 (512)
30 PTZ00361 26 proteosome regulat 100.0 3.9E-29 8.4E-34 251.5 12.9 180 143-336 211-396 (438)
31 TIGR01242 26Sp45 26S proteasom 100.0 2.9E-28 6.2E-33 240.6 13.4 211 112-336 118-335 (364)
32 CHL00176 ftsH cell division pr 100.0 3.3E-28 7.2E-33 254.7 13.4 177 144-334 211-393 (638)
33 KOG0740 AAA+-type ATPase [Post 99.9 5.4E-28 1.2E-32 239.7 11.2 205 114-335 151-362 (428)
34 KOG0732 AAA+-type ATPase conta 99.9 2.7E-27 5.9E-32 252.9 14.6 214 112-342 261-487 (1080)
35 KOG0730 AAA+-type ATPase [Post 99.9 2E-27 4.4E-32 242.5 12.4 173 143-334 212-391 (693)
36 PRK10733 hflB ATP-dependent me 99.9 8.2E-27 1.8E-31 245.5 13.7 177 144-336 180-364 (644)
37 TIGR01243 CDC48 AAA family ATP 99.9 5.8E-25 1.3E-29 234.9 15.8 207 112-335 174-387 (733)
38 PF00004 AAA: ATPase family as 99.9 2.7E-23 5.9E-28 173.5 12.0 130 152-298 1-131 (132)
39 KOG0743 AAA+-type ATPase [Post 99.9 1.2E-22 2.6E-27 200.9 14.2 193 115-328 200-402 (457)
40 KOG0744 AAA+-type ATPase [Post 99.8 9.4E-20 2E-24 173.7 7.8 152 146-311 174-340 (423)
41 KOG0742 AAA+-type ATPase [Post 99.7 4.5E-17 9.7E-22 159.4 12.2 192 121-334 356-582 (630)
42 TIGR02881 spore_V_K stage V sp 99.7 1.4E-16 3E-21 150.5 14.3 149 149-324 42-206 (261)
43 TIGR02880 cbbX_cfxQ probable R 99.7 3.5E-16 7.5E-21 150.0 12.8 150 149-324 58-223 (284)
44 CHL00181 cbbX CbbX; Provisiona 99.7 5.4E-16 1.2E-20 148.9 14.0 149 149-323 59-223 (287)
45 TIGR00763 lon ATP-dependent pr 99.7 9.3E-16 2E-20 165.2 17.3 164 150-330 348-536 (775)
46 COG0466 Lon ATP-dependent Lon 99.7 1.8E-15 3.9E-20 156.7 15.9 188 125-330 328-539 (782)
47 KOG0735 AAA+-type ATPase [Post 99.6 7.6E-16 1.7E-20 158.8 12.2 177 146-336 428-616 (952)
48 KOG2004 Mitochondrial ATP-depe 99.6 3.4E-15 7.4E-20 154.3 14.9 189 123-330 414-627 (906)
49 KOG0736 Peroxisome assembly fa 99.6 6.5E-15 1.4E-19 153.1 12.6 174 146-336 428-605 (953)
50 TIGR02639 ClpA ATP-dependent C 99.6 1.1E-14 2.3E-19 156.1 12.6 157 148-330 202-386 (731)
51 PRK04195 replication factor C 99.6 5E-14 1.1E-18 144.3 15.5 154 146-330 36-194 (482)
52 PF05496 RuvB_N: Holliday junc 99.5 6.8E-14 1.5E-18 129.0 13.4 144 147-317 48-198 (233)
53 PRK00080 ruvB Holliday junctio 99.5 1.4E-13 3E-18 134.2 13.7 153 147-326 49-210 (328)
54 PRK11034 clpA ATP-dependent Cl 99.5 6.7E-14 1.5E-18 149.7 11.9 137 149-311 207-362 (758)
55 PRK14086 dnaA chromosomal repl 99.5 6.7E-14 1.5E-18 145.5 11.2 195 111-340 283-490 (617)
56 PRK00149 dnaA chromosomal repl 99.5 2.8E-14 6E-19 144.9 8.1 196 110-342 116-326 (450)
57 PRK06893 DNA replication initi 99.5 7.8E-14 1.7E-18 129.6 10.3 155 150-340 40-205 (229)
58 TIGR00362 DnaA chromosomal rep 99.5 4E-14 8.6E-19 141.8 8.5 194 111-341 105-313 (405)
59 COG0464 SpoVK ATPases of the A 99.5 1.3E-13 2.8E-18 141.5 12.4 175 144-337 13-193 (494)
60 PRK10787 DNA-binding ATP-depen 99.5 6.7E-13 1.5E-17 142.8 17.1 163 150-329 350-536 (784)
61 TIGR00635 ruvB Holliday juncti 99.5 5.5E-13 1.2E-17 128.0 13.8 153 147-326 28-189 (305)
62 TIGR00390 hslU ATP-dependent p 99.5 5.2E-13 1.1E-17 133.2 13.4 154 148-307 46-342 (441)
63 PRK10865 protein disaggregatio 99.5 4E-13 8.7E-18 146.1 13.7 138 150-312 200-355 (857)
64 COG2256 MGS1 ATPase related to 99.5 5.3E-13 1.2E-17 131.1 13.0 125 149-311 48-176 (436)
65 PHA02544 44 clamp loader, smal 99.5 1.6E-12 3.4E-17 125.5 16.1 174 121-330 13-201 (316)
66 PRK05342 clpX ATP-dependent pr 99.5 8.5E-13 1.9E-17 132.6 14.5 103 149-251 108-213 (412)
67 TIGR03345 VI_ClpV1 type VI sec 99.4 7.9E-13 1.7E-17 143.6 13.8 153 150-329 209-390 (852)
68 PRK12422 chromosomal replicati 99.4 6.7E-13 1.5E-17 134.7 12.1 195 111-341 106-316 (445)
69 PRK14088 dnaA chromosomal repl 99.4 4.2E-13 9E-18 136.1 9.5 191 111-339 100-306 (440)
70 PRK05201 hslU ATP-dependent pr 99.4 1.4E-12 3.1E-17 130.2 13.1 153 149-307 50-344 (443)
71 TIGR00382 clpX endopeptidase C 99.4 2E-12 4.3E-17 129.7 13.1 127 150-277 117-247 (413)
72 PRK14956 DNA polymerase III su 99.4 5.1E-12 1.1E-16 128.4 15.7 146 146-325 37-209 (484)
73 PLN03025 replication factor C 99.4 1.4E-12 3.1E-17 126.7 11.2 155 151-343 36-202 (319)
74 TIGR03346 chaperone_ClpB ATP-d 99.4 1.7E-12 3.7E-17 141.3 12.7 156 149-330 194-377 (852)
75 PRK14962 DNA polymerase III su 99.4 6.1E-12 1.3E-16 128.5 15.8 148 146-328 33-208 (472)
76 PRK07003 DNA polymerase III su 99.4 3.1E-12 6.7E-17 135.1 13.9 157 134-326 25-208 (830)
77 CHL00095 clpC Clp protease ATP 99.4 1.3E-12 2.9E-17 141.7 11.3 158 147-330 198-382 (821)
78 PRK05642 DNA replication initi 99.4 2E-12 4.4E-17 120.6 11.0 184 112-341 15-211 (234)
79 TIGR02640 gas_vesic_GvpN gas v 99.4 1.7E-11 3.8E-16 116.1 16.9 145 150-311 22-198 (262)
80 PRK07940 DNA polymerase III su 99.4 5.2E-12 1.1E-16 126.3 13.8 159 145-335 32-213 (394)
81 PRK12323 DNA polymerase III su 99.4 7.5E-12 1.6E-16 130.6 13.8 147 135-317 26-202 (700)
82 PRK08084 DNA replication initi 99.3 1E-11 2.2E-16 115.9 13.0 154 150-341 46-212 (235)
83 PF00308 Bac_DnaA: Bacterial d 99.3 1.4E-12 3.1E-17 120.5 7.2 193 111-341 3-211 (219)
84 PRK13342 recombination factor 99.3 1.1E-11 2.3E-16 124.8 13.7 140 149-326 36-184 (413)
85 KOG1969 DNA replication checkp 99.3 2.1E-11 4.6E-16 126.8 15.6 159 149-330 326-502 (877)
86 PRK14960 DNA polymerase III su 99.3 1.2E-11 2.7E-16 129.2 13.3 157 134-326 24-207 (702)
87 TIGR03420 DnaA_homol_Hda DnaA 99.3 5.5E-12 1.2E-16 115.5 9.6 156 147-339 36-202 (226)
88 PRK12402 replication factor C 99.3 2E-11 4.4E-16 118.2 13.4 151 151-328 38-216 (337)
89 COG2255 RuvB Holliday junction 99.3 2.8E-11 6.1E-16 114.5 13.7 138 146-313 49-196 (332)
90 PRK14961 DNA polymerase III su 99.3 2.7E-11 5.8E-16 120.0 14.3 164 137-332 28-213 (363)
91 PRK14087 dnaA chromosomal repl 99.3 1.1E-11 2.4E-16 126.1 11.3 194 110-339 109-320 (450)
92 PRK14949 DNA polymerase III su 99.3 6.4E-11 1.4E-15 127.2 16.8 168 110-317 10-197 (944)
93 COG1219 ClpX ATP-dependent pro 99.3 1.3E-11 2.9E-16 118.2 10.2 137 150-287 98-245 (408)
94 PRK08903 DnaA regulatory inact 99.3 1.5E-11 3.3E-16 113.3 10.2 180 110-342 12-203 (227)
95 cd00009 AAA The AAA+ (ATPases 99.3 3.7E-11 8.1E-16 99.8 11.6 128 148-298 18-150 (151)
96 PF07724 AAA_2: AAA domain (Cd 99.3 3.1E-12 6.7E-17 114.1 4.1 126 150-281 4-133 (171)
97 PRK06645 DNA polymerase III su 99.3 1.1E-10 2.4E-15 120.1 15.9 154 145-327 39-218 (507)
98 PF07728 AAA_5: AAA domain (dy 99.3 2.3E-12 5E-17 109.7 2.9 123 151-287 1-137 (139)
99 PRK08727 hypothetical protein; 99.3 4.1E-11 8.9E-16 111.7 11.3 143 150-331 42-197 (233)
100 PRK07994 DNA polymerase III su 99.3 1E-10 2.3E-15 123.0 15.6 161 111-317 11-197 (647)
101 PRK06620 hypothetical protein; 99.3 2.1E-11 4.5E-16 112.5 9.2 173 111-341 11-192 (214)
102 TIGR02928 orc1/cdc6 family rep 99.3 1.3E-10 2.8E-15 114.1 15.4 144 147-312 38-213 (365)
103 PRK14970 DNA polymerase III su 99.2 6.6E-11 1.4E-15 117.0 13.0 153 146-327 36-198 (367)
104 TIGR01650 PD_CobS cobaltochela 99.2 3.7E-11 8.1E-16 116.9 10.8 143 149-311 64-233 (327)
105 PRK08691 DNA polymerase III su 99.2 6.2E-11 1.3E-15 124.8 13.0 164 134-327 25-209 (709)
106 PRK14958 DNA polymerase III su 99.2 4.4E-11 9.6E-16 123.3 11.8 171 112-327 12-209 (509)
107 KOG0989 Replication factor C, 99.2 3.8E-11 8.3E-16 114.6 10.3 175 123-334 30-225 (346)
108 TIGR02639 ClpA ATP-dependent C 99.2 1.3E-10 2.8E-15 124.9 15.6 142 148-312 482-663 (731)
109 PRK08116 hypothetical protein; 99.2 2.2E-11 4.8E-16 116.0 8.6 136 106-278 75-221 (268)
110 PRK13341 recombination factor 99.2 7.4E-11 1.6E-15 126.0 13.5 143 150-330 53-209 (725)
111 PRK14951 DNA polymerase III su 99.2 1E-10 2.2E-15 122.7 14.1 177 110-326 10-213 (618)
112 PRK14963 DNA polymerase III su 99.2 2.4E-10 5.1E-15 117.8 16.5 146 146-325 33-204 (504)
113 TIGR02397 dnaX_nterm DNA polym 99.2 4.8E-11 1E-15 116.6 10.8 148 146-328 33-208 (355)
114 smart00382 AAA ATPases associa 99.2 1.1E-10 2.5E-15 95.6 11.4 126 149-297 2-144 (148)
115 PRK11034 clpA ATP-dependent Cl 99.2 1.4E-10 2.9E-15 124.6 14.3 142 150-311 489-666 (758)
116 PRK00411 cdc6 cell division co 99.2 1.6E-10 3.5E-15 114.7 13.9 144 147-312 53-221 (394)
117 PRK14957 DNA polymerase III su 99.2 2.6E-10 5.5E-15 118.3 15.5 138 146-317 35-197 (546)
118 PRK14964 DNA polymerase III su 99.2 1.4E-10 2.9E-15 118.8 13.3 159 134-328 22-207 (491)
119 PRK07764 DNA polymerase III su 99.2 2E-10 4.3E-15 124.2 14.6 147 135-317 25-198 (824)
120 PRK05563 DNA polymerase III su 99.2 1.3E-10 2.7E-15 121.3 12.6 171 111-326 11-208 (559)
121 TIGR00678 holB DNA polymerase 99.2 2.3E-10 5E-15 102.6 11.7 144 147-328 12-181 (188)
122 PRK14969 DNA polymerase III su 99.2 1.1E-10 2.3E-15 121.1 10.6 167 112-317 12-197 (527)
123 PRK14959 DNA polymerase III su 99.2 3.3E-10 7.1E-15 118.6 13.7 175 111-332 11-213 (624)
124 PRK12377 putative replication 99.2 1.7E-10 3.7E-15 108.7 10.5 99 149-278 101-206 (248)
125 PRK14952 DNA polymerase III su 99.2 5.2E-10 1.1E-14 116.9 14.7 160 113-317 10-196 (584)
126 PRK05896 DNA polymerase III su 99.1 2.9E-10 6.4E-15 118.4 12.6 146 145-325 34-207 (605)
127 PTZ00112 origin recognition co 99.1 3.6E-10 7.8E-15 120.6 13.4 139 150-313 782-951 (1164)
128 KOG2028 ATPase related to the 99.1 4.6E-10 9.9E-15 109.5 12.6 134 136-309 152-292 (554)
129 PRK14965 DNA polymerase III su 99.1 2.1E-10 4.5E-15 120.1 10.8 171 110-325 10-207 (576)
130 PRK06305 DNA polymerase III su 99.1 1.7E-09 3.8E-14 110.1 17.1 170 110-325 11-209 (451)
131 PRK00440 rfc replication facto 99.1 1E-09 2.2E-14 105.4 13.8 161 135-332 27-196 (319)
132 TIGR02902 spore_lonB ATP-depen 99.1 4.7E-10 1E-14 116.4 12.2 161 147-322 84-289 (531)
133 PRK07133 DNA polymerase III su 99.1 5.5E-10 1.2E-14 118.5 12.8 143 146-317 37-196 (725)
134 PRK14953 DNA polymerase III su 99.1 7.3E-10 1.6E-14 113.8 13.3 152 146-326 35-208 (486)
135 PRK14948 DNA polymerase III su 99.1 7.3E-10 1.6E-14 116.8 13.5 152 147-326 36-210 (620)
136 PRK06835 DNA replication prote 99.1 1.7E-10 3.6E-15 113.0 7.5 139 109-278 135-289 (329)
137 PRK11331 5-methylcytosine-spec 99.1 9.4E-10 2E-14 111.1 12.7 132 149-299 194-358 (459)
138 PRK14955 DNA polymerase III su 99.1 3.9E-10 8.5E-15 113.0 9.9 184 109-333 9-222 (397)
139 KOG0745 Putative ATP-dependent 99.1 6.2E-10 1.3E-14 110.4 10.2 148 150-300 227-388 (564)
140 TIGR03345 VI_ClpV1 type VI sec 99.1 2.1E-09 4.5E-14 117.1 14.5 142 147-311 593-780 (852)
141 PRK07952 DNA replication prote 99.0 3.8E-10 8.2E-15 106.1 7.5 113 134-278 85-205 (244)
142 COG0593 DnaA ATPase involved i 99.0 8.3E-10 1.8E-14 110.3 10.3 194 109-340 80-288 (408)
143 PRK14954 DNA polymerase III su 99.0 2.4E-09 5.1E-14 112.7 14.0 176 110-325 10-215 (620)
144 COG0714 MoxR-like ATPases [Gen 99.0 6.6E-10 1.4E-14 108.5 9.1 144 151-311 45-203 (329)
145 PRK06647 DNA polymerase III su 99.0 4E-09 8.7E-14 110.1 15.2 153 146-326 35-208 (563)
146 PRK09111 DNA polymerase III su 99.0 3.7E-09 7.9E-14 111.0 14.9 161 134-325 33-220 (598)
147 PF05673 DUF815: Protein of un 99.0 6.6E-09 1.4E-13 97.2 14.0 157 135-325 38-223 (249)
148 CHL00095 clpC Clp protease ATP 99.0 3.1E-09 6.6E-14 115.6 13.6 161 131-312 520-733 (821)
149 TIGR02903 spore_lon_C ATP-depe 99.0 8.3E-09 1.8E-13 108.9 15.3 165 148-330 174-386 (615)
150 KOG0741 AAA+-type ATPase [Post 99.0 2.1E-09 4.6E-14 108.8 10.1 138 147-303 536-675 (744)
151 PRK08451 DNA polymerase III su 99.0 7.8E-09 1.7E-13 106.9 14.6 147 146-326 33-206 (535)
152 PRK06921 hypothetical protein; 99.0 4.3E-09 9.4E-14 100.2 11.7 67 149-223 117-188 (266)
153 PRK14950 DNA polymerase III su 99.0 3E-09 6.4E-14 111.7 11.6 155 147-329 36-212 (585)
154 PHA02244 ATPase-like protein 99.0 3.6E-09 7.8E-14 104.5 11.2 127 149-299 119-262 (383)
155 PRK08181 transposase; Validate 99.0 3.8E-10 8.2E-15 107.6 4.2 100 149-278 106-209 (269)
156 TIGR03346 chaperone_ClpB ATP-d 99.0 6.5E-09 1.4E-13 113.5 13.9 158 149-326 595-802 (852)
157 PRK09087 hypothetical protein; 98.9 6.1E-09 1.3E-13 96.8 11.4 140 150-337 45-194 (226)
158 COG0470 HolB ATPase involved i 98.9 3.2E-09 7E-14 101.9 9.4 122 147-298 22-167 (325)
159 PRK08939 primosomal protein Dn 98.9 1.9E-09 4E-14 104.7 7.6 68 148-223 155-228 (306)
160 PF01695 IstB_IS21: IstB-like 98.9 3E-10 6.5E-15 101.9 1.1 70 147-222 45-118 (178)
161 PRK06526 transposase; Provisio 98.9 9.3E-10 2E-14 104.1 3.4 73 147-225 96-172 (254)
162 PRK10865 protein disaggregatio 98.9 3.1E-08 6.7E-13 108.2 15.1 160 150-329 599-809 (857)
163 PRK14971 DNA polymerase III su 98.9 1.7E-08 3.6E-13 106.5 12.6 145 146-317 36-199 (614)
164 PRK05707 DNA polymerase III su 98.9 3.7E-08 8.1E-13 96.5 14.0 138 146-311 19-178 (328)
165 COG1474 CDC6 Cdc6-related prot 98.9 2E-08 4.4E-13 99.7 11.8 142 145-312 38-204 (366)
166 PRK07471 DNA polymerase III su 98.8 4.9E-08 1.1E-12 97.0 13.8 139 145-311 37-213 (365)
167 PRK09112 DNA polymerase III su 98.8 2.1E-07 4.5E-12 92.1 17.5 148 145-321 41-223 (351)
168 PRK05564 DNA polymerase III su 98.8 1.2E-07 2.6E-12 91.9 15.6 150 145-325 22-177 (313)
169 PRK09183 transposase/IS protei 98.8 6.6E-09 1.4E-13 98.5 4.7 75 146-225 99-177 (259)
170 COG1220 HslU ATP-dependent pro 98.7 1.4E-07 3E-12 91.6 13.3 101 211-317 249-366 (444)
171 PRK13407 bchI magnesium chelat 98.7 2.1E-08 4.5E-13 98.5 6.8 84 212-311 128-216 (334)
172 CHL00081 chlI Mg-protoporyphyr 98.7 5.3E-08 1.2E-12 96.0 9.5 84 212-311 144-232 (350)
173 COG0542 clpA ATP-binding subun 98.7 2.3E-08 5E-13 106.6 7.4 149 143-311 514-705 (786)
174 COG1484 DnaC DNA replication p 98.7 7.3E-08 1.6E-12 91.2 9.9 68 148-223 104-178 (254)
175 TIGR00602 rad24 checkpoint pro 98.7 2.6E-07 5.6E-12 97.6 14.7 81 147-227 108-210 (637)
176 COG0542 clpA ATP-binding subun 98.7 1.1E-07 2.4E-12 101.4 10.8 134 152-311 194-346 (786)
177 TIGR02442 Cob-chelat-sub cobal 98.7 8.7E-08 1.9E-12 101.6 9.9 143 150-310 26-213 (633)
178 TIGR02031 BchD-ChlD magnesium 98.6 5E-08 1.1E-12 102.6 7.6 143 150-311 17-174 (589)
179 smart00350 MCM minichromosome 98.6 4.1E-08 8.9E-13 101.5 6.9 136 151-311 238-400 (509)
180 PRK07399 DNA polymerase III su 98.6 7E-07 1.5E-11 87.1 14.6 159 146-333 23-219 (314)
181 PF00158 Sigma54_activat: Sigm 98.6 6E-08 1.3E-12 86.3 6.4 122 147-292 20-155 (168)
182 PRK06964 DNA polymerase III su 98.6 7.4E-07 1.6E-11 87.8 14.5 137 146-310 18-203 (342)
183 COG2812 DnaX DNA polymerase II 98.6 2.8E-07 6E-12 94.8 11.4 178 114-330 14-212 (515)
184 PRK04132 replication factor C 98.6 7.2E-07 1.6E-11 96.7 14.3 144 153-330 568-723 (846)
185 PF07726 AAA_3: ATPase family 98.6 7.4E-08 1.6E-12 81.9 5.0 115 152-287 2-127 (131)
186 TIGR02030 BchI-ChlI magnesium 98.6 1.7E-07 3.8E-12 92.1 8.2 84 211-310 130-218 (337)
187 PRK08058 DNA polymerase III su 98.5 2.3E-06 5E-11 83.8 15.0 136 145-308 24-179 (329)
188 PF00910 RNA_helicase: RNA hel 98.5 3E-07 6.4E-12 75.5 6.9 24 152-175 1-24 (107)
189 PRK08769 DNA polymerase III su 98.5 1.5E-06 3.2E-11 84.9 12.6 154 145-330 22-203 (319)
190 PRK06871 DNA polymerase III su 98.5 1.5E-06 3.2E-11 85.1 12.1 138 145-310 20-178 (325)
191 PF03969 AFG1_ATPase: AFG1-lik 98.5 4.2E-07 9E-12 90.3 7.9 31 145-175 58-88 (362)
192 PRK13531 regulatory ATPase Rav 98.5 5.6E-07 1.2E-11 91.9 8.9 26 150-175 40-65 (498)
193 PF13401 AAA_22: AAA domain; P 98.4 8.2E-07 1.8E-11 74.0 8.3 77 149-225 4-100 (131)
194 KOG0991 Replication factor C, 98.4 1.4E-06 3E-11 81.0 10.4 170 122-325 20-201 (333)
195 TIGR03015 pepcterm_ATPase puta 98.4 1.1E-05 2.4E-10 75.7 16.6 26 149-174 43-68 (269)
196 TIGR02974 phageshock_pspF psp 98.4 7.5E-07 1.6E-11 87.3 8.5 134 148-304 21-176 (329)
197 PRK08699 DNA polymerase III su 98.4 2.9E-06 6.3E-11 83.1 12.5 135 146-309 18-183 (325)
198 COG2607 Predicted ATPase (AAA+ 98.4 8.1E-06 1.8E-10 76.2 14.6 149 136-318 72-246 (287)
199 PF13177 DNA_pol3_delta2: DNA 98.4 2.8E-06 6E-11 75.0 10.8 118 145-288 15-152 (162)
200 PF05729 NACHT: NACHT domain 98.4 5.5E-06 1.2E-10 71.1 12.1 145 150-313 1-165 (166)
201 PRK07993 DNA polymerase III su 98.4 2.7E-06 5.9E-11 83.6 11.3 137 145-309 20-178 (334)
202 TIGR01817 nifA Nif-specific re 98.4 1.1E-06 2.4E-11 91.3 8.6 132 148-303 218-372 (534)
203 PRK11608 pspF phage shock prot 98.4 1.5E-06 3.3E-11 85.0 9.1 134 148-304 28-183 (326)
204 PRK10820 DNA-binding transcrip 98.3 6.6E-06 1.4E-10 85.5 13.9 160 112-304 200-381 (520)
205 cd01120 RecA-like_NTPases RecA 98.3 2.2E-06 4.7E-11 73.0 8.6 73 152-226 2-99 (165)
206 PF13173 AAA_14: AAA domain 98.3 1.6E-06 3.4E-11 73.2 7.4 69 150-224 3-73 (128)
207 PRK06090 DNA polymerase III su 98.3 1.1E-05 2.4E-10 78.8 13.7 137 145-309 21-178 (319)
208 PRK11388 DNA-binding transcrip 98.3 2.7E-06 5.7E-11 90.3 9.3 132 149-304 348-499 (638)
209 PLN03210 Resistant to P. syrin 98.2 2.7E-05 5.9E-10 88.0 16.7 31 146-176 204-234 (1153)
210 PHA00729 NTP-binding motif con 98.2 2.9E-06 6.4E-11 78.9 7.4 27 150-176 18-44 (226)
211 KOG1968 Replication factor C, 98.2 2.2E-06 4.8E-11 93.1 7.4 155 151-333 359-525 (871)
212 PF06068 TIP49: TIP49 C-termin 98.2 1.2E-06 2.6E-11 86.5 4.6 55 149-204 50-106 (398)
213 COG1224 TIP49 DNA helicase TIP 98.2 2.6E-06 5.7E-11 83.3 5.9 57 148-205 64-122 (450)
214 PRK05022 anaerobic nitric oxid 98.2 9E-06 1.9E-10 84.2 10.2 133 148-304 209-364 (509)
215 TIGR00368 Mg chelatase-related 98.2 3.7E-06 8E-11 86.8 7.2 25 149-173 211-235 (499)
216 PF06309 Torsin: Torsin; Inte 98.2 2.5E-05 5.5E-10 66.3 10.9 46 128-173 32-77 (127)
217 PRK15424 propionate catabolism 98.1 4.9E-06 1.1E-10 86.6 7.7 133 148-304 241-405 (538)
218 PRK15429 formate hydrogenlyase 98.1 8.1E-06 1.7E-10 87.4 9.6 134 148-305 398-554 (686)
219 COG1239 ChlI Mg-chelatase subu 98.1 2.7E-05 6E-10 77.8 12.4 89 210-314 142-235 (423)
220 PF00931 NB-ARC: NB-ARC domain 98.1 4.5E-05 9.8E-10 72.0 13.5 26 147-172 17-42 (287)
221 PTZ00111 DNA replication licen 98.1 5.7E-06 1.2E-10 89.8 8.0 138 150-307 493-653 (915)
222 COG3829 RocR Transcriptional r 98.1 5.9E-06 1.3E-10 84.7 7.0 153 110-296 239-408 (560)
223 TIGR02237 recomb_radB DNA repa 98.1 4E-05 8.7E-10 69.5 11.4 83 144-226 7-111 (209)
224 KOG2170 ATPase of the AAA+ sup 98.1 1.3E-05 2.8E-10 77.0 8.4 93 129-225 90-191 (344)
225 TIGR02329 propionate_PrpR prop 98.1 8.1E-06 1.7E-10 84.9 7.5 133 148-304 234-390 (526)
226 COG1485 Predicted ATPase [Gene 98.0 1.7E-05 3.7E-10 77.6 8.4 30 146-175 62-91 (367)
227 PHA02774 E1; Provisional 98.0 3.3E-05 7.2E-10 80.4 10.7 127 136-296 423-552 (613)
228 COG1221 PspF Transcriptional r 98.0 1.4E-05 3E-10 80.1 7.6 131 150-303 102-252 (403)
229 PF01637 Arch_ATPase: Archaeal 98.0 0.00014 3E-09 65.7 13.6 25 149-173 20-44 (234)
230 KOG1051 Chaperone HSP104 and r 98.0 3.1E-05 6.7E-10 84.1 10.6 112 147-279 589-712 (898)
231 smart00763 AAA_PrkA PrkA AAA d 98.0 1.5E-05 3.3E-10 78.8 7.6 56 148-203 77-143 (361)
232 cd01124 KaiC KaiC is a circadi 98.0 7.9E-05 1.7E-09 65.9 11.5 31 152-182 2-35 (187)
233 COG1618 Predicted nucleotide k 98.0 9.2E-05 2E-09 65.4 10.9 28 147-174 3-30 (179)
234 KOG1514 Origin recognition com 98.0 5.1E-05 1.1E-09 79.8 10.8 137 151-314 424-592 (767)
235 PF13207 AAA_17: AAA domain; P 97.9 8.7E-06 1.9E-10 67.1 4.0 31 152-182 2-32 (121)
236 PRK15115 response regulator Gl 97.9 2.2E-05 4.7E-10 79.3 7.8 132 149-304 157-311 (444)
237 PF14532 Sigma54_activ_2: Sigm 97.9 2E-05 4.3E-10 67.2 6.3 59 149-225 21-82 (138)
238 PRK09862 putative ATP-dependen 97.9 2.9E-05 6.2E-10 80.3 7.9 26 148-173 209-234 (506)
239 PF12774 AAA_6: Hydrolytic ATP 97.9 0.00021 4.5E-09 66.9 12.8 140 148-307 31-176 (231)
240 PHA02624 large T antigen; Prov 97.9 9.9E-05 2.2E-09 77.2 11.5 137 144-303 426-566 (647)
241 PRK00131 aroK shikimate kinase 97.9 1.6E-05 3.5E-10 69.2 4.7 34 147-180 2-35 (175)
242 PRK11361 acetoacetate metaboli 97.9 4.6E-05 1E-09 77.1 8.7 132 149-304 166-320 (457)
243 KOG1970 Checkpoint RAD17-RFC c 97.9 0.0002 4.4E-09 73.7 13.0 33 149-181 110-142 (634)
244 PRK08118 topology modulation p 97.9 4.1E-05 8.8E-10 67.9 7.2 32 151-182 3-34 (167)
245 PF12775 AAA_7: P-loop contain 97.9 2.9E-05 6.2E-10 74.3 6.6 141 149-311 33-193 (272)
246 KOG2035 Replication factor C, 97.9 0.00023 5E-09 67.9 12.5 140 151-317 36-205 (351)
247 PRK09361 radB DNA repair and r 97.8 7.1E-05 1.5E-09 68.8 8.0 40 144-183 18-60 (225)
248 cd03283 ABC_MutS-like MutS-lik 97.8 0.00016 3.6E-09 65.8 10.1 23 150-172 26-48 (199)
249 PF03215 Rad17: Rad17 cell cyc 97.8 4.3E-05 9.3E-10 79.3 7.0 45 136-180 30-76 (519)
250 PRK11823 DNA repair protein Ra 97.8 9.5E-05 2.1E-09 75.5 9.3 79 145-227 76-171 (446)
251 PRK10923 glnG nitrogen regulat 97.8 7.6E-05 1.7E-09 76.0 8.2 133 149-304 161-315 (469)
252 PRK09376 rho transcription ter 97.7 7.3E-05 1.6E-09 74.8 7.5 74 152-225 172-269 (416)
253 PF00493 MCM: MCM2/3/5 family 97.7 3E-05 6.6E-10 76.1 4.7 135 149-312 57-222 (331)
254 PRK06067 flagellar accessory p 97.7 0.00019 4.1E-09 66.5 9.8 82 144-225 20-133 (234)
255 KOG1942 DNA helicase, TBP-inte 97.7 3.2E-05 6.9E-10 74.3 4.6 56 149-205 64-121 (456)
256 PRK07261 topology modulation p 97.7 9.2E-05 2E-09 65.8 7.2 39 152-190 3-41 (171)
257 TIGR02012 tigrfam_recA protein 97.7 0.00029 6.3E-09 69.0 11.1 84 144-227 50-148 (321)
258 PF13671 AAA_33: AAA domain; P 97.7 4.2E-05 9E-10 64.7 4.6 32 152-185 2-33 (143)
259 cd01128 rho_factor Transcripti 97.7 0.00011 2.5E-09 69.4 7.9 78 148-225 15-116 (249)
260 PRK13695 putative NTPase; Prov 97.7 0.00028 6E-09 62.4 9.8 23 151-173 2-24 (174)
261 cd01121 Sms Sms (bacterial rad 97.7 0.00021 4.5E-09 71.4 9.7 78 145-226 78-172 (372)
262 PRK05917 DNA polymerase III su 97.7 0.00028 6E-09 68.1 10.0 117 145-287 15-144 (290)
263 KOG0990 Replication factor C, 97.7 0.00011 2.5E-09 71.1 7.2 115 151-296 64-187 (360)
264 cd00983 recA RecA is a bacter 97.6 0.00043 9.3E-09 67.9 11.0 84 144-227 50-148 (325)
265 cd00561 CobA_CobO_BtuR ATP:cor 97.6 0.00039 8.4E-09 61.5 9.6 73 151-223 4-106 (159)
266 PRK13947 shikimate kinase; Pro 97.6 0.0002 4.4E-09 62.7 7.6 41 151-193 3-43 (171)
267 PRK05973 replicative DNA helic 97.6 0.0011 2.3E-08 62.4 12.7 39 144-182 59-100 (237)
268 PRK06762 hypothetical protein; 97.6 0.0001 2.2E-09 64.4 5.6 38 149-186 2-39 (166)
269 TIGR02915 PEP_resp_reg putativ 97.6 0.00014 3E-09 73.5 7.2 134 149-305 162-317 (445)
270 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00031 6.8E-09 64.7 8.7 82 144-225 14-128 (235)
271 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00068 1.5E-08 62.4 10.8 23 149-171 29-51 (213)
272 COG2204 AtoC Response regulato 97.6 0.00019 4E-09 73.3 7.6 122 148-293 163-298 (464)
273 cd01394 radB RadB. The archaea 97.6 0.00026 5.7E-09 64.7 8.0 39 144-182 14-55 (218)
274 PRK03839 putative kinase; Prov 97.6 6.9E-05 1.5E-09 66.5 3.9 31 151-181 2-32 (180)
275 PF06745 KaiC: KaiC; InterPro 97.6 0.00031 6.6E-09 64.6 8.3 81 144-224 14-127 (226)
276 cd01393 recA_like RecA is a b 97.5 0.00056 1.2E-08 62.6 9.8 30 144-173 14-43 (226)
277 KOG2227 Pre-initiation complex 97.5 0.00056 1.2E-08 69.3 10.4 180 134-340 159-370 (529)
278 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.0011 2.3E-08 61.9 11.7 39 144-182 16-57 (237)
279 PLN02200 adenylate kinase fami 97.5 0.0001 2.2E-09 68.9 4.9 41 144-186 38-78 (234)
280 cd02021 GntK Gluconate kinase 97.5 0.00038 8.3E-09 59.7 8.1 27 152-178 2-28 (150)
281 PRK08533 flagellar accessory p 97.5 0.0006 1.3E-08 63.5 10.0 38 145-182 20-60 (230)
282 PF05621 TniB: Bacterial TniB 97.5 0.0012 2.6E-08 63.9 12.1 87 139-225 51-158 (302)
283 cd00464 SK Shikimate kinase (S 97.5 9.6E-05 2.1E-09 63.2 4.1 30 152-181 2-31 (154)
284 COG5271 MDN1 AAA ATPase contai 97.5 0.00037 7.9E-09 79.1 9.3 149 147-315 1541-1707(4600)
285 TIGR01618 phage_P_loop phage n 97.5 0.00012 2.6E-09 68.0 4.9 23 149-171 12-34 (220)
286 TIGR01818 ntrC nitrogen regula 97.5 5.4E-05 1.2E-09 76.8 2.8 132 148-303 156-310 (463)
287 cd00227 CPT Chloramphenicol (C 97.5 0.00024 5.1E-09 63.0 6.6 33 150-182 3-35 (175)
288 PRK09354 recA recombinase A; P 97.5 0.00042 9E-09 68.5 8.9 83 144-226 55-152 (349)
289 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 9.9E-05 2.1E-09 65.4 4.0 32 152-185 2-33 (183)
290 PRK08233 hypothetical protein; 97.5 0.00049 1.1E-08 60.5 8.2 26 149-174 3-28 (182)
291 cd03238 ABC_UvrA The excision 97.5 0.0014 3E-08 58.8 11.0 27 146-172 18-44 (176)
292 cd01131 PilT Pilus retraction 97.5 0.00029 6.2E-09 64.0 6.7 24 151-174 3-26 (198)
293 PRK14531 adenylate kinase; Pro 97.4 0.00015 3.2E-09 64.9 4.5 30 150-179 3-32 (183)
294 TIGR00764 lon_rel lon-related 97.4 6.2E-05 1.3E-09 79.7 2.4 83 121-204 9-102 (608)
295 smart00534 MUTSac ATPase domai 97.4 0.0013 2.9E-08 58.9 10.7 19 152-170 2-20 (185)
296 TIGR01313 therm_gnt_kin carboh 97.4 0.0005 1.1E-08 59.8 7.6 27 152-178 1-27 (163)
297 PRK14532 adenylate kinase; Pro 97.4 0.00012 2.6E-09 65.3 3.8 29 151-179 2-30 (188)
298 PRK07132 DNA polymerase III su 97.4 0.0022 4.7E-08 62.3 12.6 130 146-309 15-160 (299)
299 PRK00625 shikimate kinase; Pro 97.4 0.00014 3.1E-09 65.0 4.0 31 151-181 2-32 (173)
300 KOG2383 Predicted ATPase [Gene 97.4 0.00065 1.4E-08 67.7 8.8 27 147-173 112-138 (467)
301 PRK06696 uridine kinase; Valid 97.4 0.00039 8.5E-09 64.1 7.0 40 146-185 19-61 (223)
302 KOG3347 Predicted nucleotide k 97.4 0.00013 2.8E-09 63.7 3.4 31 151-181 9-39 (176)
303 TIGR02858 spore_III_AA stage I 97.4 0.00032 6.9E-09 67.1 6.4 25 150-174 112-136 (270)
304 PRK10365 transcriptional regul 97.4 0.00038 8.2E-09 70.1 7.2 132 149-304 162-316 (441)
305 cd03243 ABC_MutS_homologs The 97.4 0.0017 3.6E-08 58.9 10.8 22 150-171 30-51 (202)
306 cd01428 ADK Adenylate kinase ( 97.4 0.00016 3.6E-09 64.3 3.9 29 152-180 2-30 (194)
307 cd02027 APSK Adenosine 5'-phos 97.4 0.00054 1.2E-08 59.4 7.0 34 152-185 2-38 (149)
308 PRK06547 hypothetical protein; 97.4 0.0002 4.4E-09 63.9 4.4 34 147-180 13-46 (172)
309 cd00984 DnaB_C DnaB helicase C 97.4 0.0024 5.3E-08 59.0 11.8 38 145-182 9-50 (242)
310 KOG0478 DNA replication licens 97.4 0.00052 1.1E-08 72.2 7.8 132 150-301 463-616 (804)
311 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.0024 5.2E-08 60.5 11.8 38 145-182 32-72 (259)
312 cd02020 CMPK Cytidine monophos 97.3 0.00019 4.2E-09 60.7 3.8 30 152-181 2-31 (147)
313 COG3854 SpoIIIAA ncharacterize 97.3 0.00095 2.1E-08 62.4 8.5 73 150-222 138-228 (308)
314 PRK14527 adenylate kinase; Pro 97.3 0.0002 4.4E-09 64.3 4.0 32 147-178 4-35 (191)
315 PRK06217 hypothetical protein; 97.3 0.00022 4.7E-09 63.7 4.0 31 151-181 3-33 (183)
316 TIGR00416 sms DNA repair prote 97.3 0.0021 4.4E-08 66.0 11.6 78 145-226 90-184 (454)
317 PHA02530 pseT polynucleotide k 97.3 0.00069 1.5E-08 64.9 7.7 35 149-185 2-37 (300)
318 PTZ00088 adenylate kinase 1; P 97.3 0.00029 6.2E-09 65.8 4.9 33 148-180 5-37 (229)
319 PF14516 AAA_35: AAA-like doma 97.3 0.013 2.7E-07 57.6 16.7 59 121-187 11-72 (331)
320 COG0563 Adk Adenylate kinase a 97.3 0.00023 4.9E-09 64.0 4.0 32 151-184 2-33 (178)
321 PRK13949 shikimate kinase; Pro 97.3 0.00023 5E-09 63.2 3.9 31 151-181 3-33 (169)
322 PF05707 Zot: Zonular occluden 97.3 0.00084 1.8E-08 60.7 7.7 122 151-297 2-143 (193)
323 PRK05537 bifunctional sulfate 97.3 0.0012 2.6E-08 69.5 9.9 67 120-187 364-434 (568)
324 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00055 1.2E-08 64.1 6.7 34 152-185 2-38 (249)
325 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00026 5.7E-09 62.5 4.3 29 151-179 5-33 (188)
326 TIGR03880 KaiC_arch_3 KaiC dom 97.3 0.0026 5.6E-08 58.5 11.0 39 145-183 12-53 (224)
327 PRK04296 thymidine kinase; Pro 97.3 0.00084 1.8E-08 60.6 7.5 70 150-222 3-88 (190)
328 PRK05800 cobU adenosylcobinami 97.3 0.0015 3.3E-08 58.1 9.0 33 151-183 3-35 (170)
329 TIGR00767 rho transcription te 97.3 0.00088 1.9E-08 67.3 8.0 76 150-225 169-268 (415)
330 cd03282 ABC_MSH4_euk MutS4 hom 97.3 0.0025 5.3E-08 58.4 10.4 24 148-171 28-51 (204)
331 PF01583 APS_kinase: Adenylyls 97.3 0.0012 2.6E-08 58.2 8.0 41 149-189 2-45 (156)
332 PRK13406 bchD magnesium chelat 97.2 0.0061 1.3E-07 64.4 14.5 129 150-297 26-166 (584)
333 PRK14530 adenylate kinase; Pro 97.2 0.00029 6.3E-09 64.6 4.0 30 151-180 5-34 (215)
334 PRK13948 shikimate kinase; Pro 97.2 0.00038 8.3E-09 62.7 4.7 36 146-181 7-42 (182)
335 PF05272 VirE: Virulence-assoc 97.2 0.0025 5.5E-08 58.2 10.1 30 143-172 46-75 (198)
336 cd03284 ABC_MutS1 MutS1 homolo 97.2 0.0025 5.5E-08 58.8 10.1 22 150-171 31-52 (216)
337 PRK04040 adenylate kinase; Pro 97.2 0.00035 7.6E-09 63.2 4.3 29 149-177 2-32 (188)
338 TIGR00708 cobA cob(I)alamin ad 97.2 0.0025 5.4E-08 57.1 9.7 72 151-222 7-107 (173)
339 cd01122 GP4d_helicase GP4d_hel 97.2 0.0022 4.7E-08 60.5 9.7 38 145-182 26-67 (271)
340 PRK02496 adk adenylate kinase; 97.2 0.00035 7.5E-09 62.2 4.0 29 152-180 4-32 (184)
341 COG3604 FhlA Transcriptional r 97.2 0.00032 6.9E-09 71.6 4.1 122 147-292 244-379 (550)
342 PRK07276 DNA polymerase III su 97.2 0.01 2.3E-07 57.3 14.3 133 145-307 20-171 (290)
343 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.0038 8.2E-08 56.6 10.7 21 150-170 29-49 (200)
344 PRK15455 PrkA family serine pr 97.2 0.00072 1.6E-08 70.7 6.6 34 149-182 103-137 (644)
345 PF13521 AAA_28: AAA domain; P 97.2 0.00042 9.2E-09 60.4 4.2 30 152-182 2-31 (163)
346 TIGR01351 adk adenylate kinase 97.2 0.00035 7.5E-09 63.8 3.8 29 152-180 2-30 (210)
347 PRK09519 recA DNA recombinatio 97.2 0.0016 3.4E-08 70.5 9.3 82 145-226 56-152 (790)
348 PF13245 AAA_19: Part of AAA d 97.2 0.00071 1.5E-08 52.3 4.9 34 150-183 11-51 (76)
349 PRK05818 DNA polymerase III su 97.2 0.0057 1.2E-07 58.2 11.9 119 147-293 5-141 (261)
350 PRK05986 cob(I)alamin adenolsy 97.2 0.0033 7.1E-08 57.2 9.8 73 150-222 23-125 (191)
351 PRK00279 adk adenylate kinase; 97.1 0.0004 8.7E-09 63.6 4.0 28 152-179 3-30 (215)
352 PRK14528 adenylate kinase; Pro 97.1 0.00046 1E-08 62.1 4.3 30 151-180 3-32 (186)
353 PF08433 KTI12: Chromatin asso 97.1 0.0011 2.4E-08 63.4 7.1 73 151-224 3-82 (270)
354 cd03216 ABC_Carb_Monos_I This 97.1 0.0029 6.3E-08 55.5 9.2 28 146-173 23-50 (163)
355 PRK03731 aroL shikimate kinase 97.1 0.00049 1.1E-08 60.4 4.2 30 151-180 4-33 (171)
356 PRK13946 shikimate kinase; Pro 97.1 0.00043 9.3E-09 62.0 3.9 33 149-181 10-42 (184)
357 PRK12608 transcription termina 97.1 0.00089 1.9E-08 66.7 6.4 75 151-225 135-233 (380)
358 PRK04328 hypothetical protein; 97.1 0.0024 5.1E-08 60.2 9.0 38 145-182 19-59 (249)
359 COG1102 Cmk Cytidylate kinase 97.1 0.0004 8.7E-09 61.4 3.5 28 151-178 2-29 (179)
360 TIGR01420 pilT_fam pilus retra 97.1 0.0011 2.4E-08 65.4 7.0 25 150-174 123-147 (343)
361 cd03227 ABC_Class2 ABC-type Cl 97.1 0.004 8.6E-08 54.6 9.7 25 149-173 21-45 (162)
362 COG4619 ABC-type uncharacteriz 97.1 0.0024 5.1E-08 57.3 8.1 25 149-173 29-53 (223)
363 PRK04301 radA DNA repair and r 97.1 0.0027 5.8E-08 61.9 9.3 30 144-173 97-126 (317)
364 TIGR02236 recomb_radA DNA repa 97.1 0.0016 3.6E-08 63.0 7.8 30 144-173 90-119 (310)
365 PF13191 AAA_16: AAA ATPase do 97.1 0.00064 1.4E-08 59.5 4.5 40 144-183 19-61 (185)
366 PF00448 SRP54: SRP54-type pro 97.1 0.0027 5.9E-08 57.8 8.7 35 149-183 1-38 (196)
367 TIGR02238 recomb_DMC1 meiotic 97.1 0.0024 5.1E-08 62.4 8.6 27 145-171 92-118 (313)
368 cd00544 CobU Adenosylcobinamid 97.1 0.0035 7.7E-08 55.8 9.1 32 152-183 2-33 (169)
369 COG0529 CysC Adenylylsulfate k 97.1 0.0028 6E-08 57.0 8.2 43 145-187 19-64 (197)
370 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0042 9.2E-08 53.7 9.3 28 147-174 23-50 (157)
371 PRK14722 flhF flagellar biosyn 97.0 0.00086 1.9E-08 67.0 5.4 28 146-173 134-161 (374)
372 PF00406 ADK: Adenylate kinase 97.0 0.00046 1E-08 59.5 3.1 30 154-185 1-30 (151)
373 PRK09302 circadian clock prote 97.0 0.0044 9.6E-08 64.2 10.8 81 145-225 27-143 (509)
374 PRK05057 aroK shikimate kinase 97.0 0.00085 1.9E-08 59.6 4.7 34 149-182 4-37 (172)
375 PF13238 AAA_18: AAA domain; P 97.0 0.00056 1.2E-08 56.2 3.3 22 152-173 1-22 (129)
376 PF06414 Zeta_toxin: Zeta toxi 97.0 0.0026 5.7E-08 57.6 8.0 44 146-189 12-56 (199)
377 COG1936 Predicted nucleotide k 97.0 0.00052 1.1E-08 61.3 3.2 30 151-181 2-31 (180)
378 PRK01184 hypothetical protein; 97.0 0.00066 1.4E-08 60.3 4.0 30 150-180 2-31 (184)
379 PRK04182 cytidylate kinase; Pr 97.0 0.00071 1.5E-08 59.2 4.0 29 151-179 2-30 (180)
380 COG1241 MCM2 Predicted ATPase 97.0 0.00037 8.1E-09 74.1 2.5 137 150-306 320-478 (682)
381 cd03222 ABC_RNaseL_inhibitor T 97.0 0.01 2.2E-07 53.3 11.4 28 146-173 22-49 (177)
382 TIGR00150 HI0065_YjeE ATPase, 97.0 0.00093 2E-08 57.3 4.5 30 147-176 20-49 (133)
383 PF13086 AAA_11: AAA domain; P 97.0 0.00057 1.2E-08 61.6 3.4 23 151-173 19-41 (236)
384 PLN03187 meiotic recombination 97.0 0.0055 1.2E-07 60.6 10.6 28 145-172 122-149 (344)
385 cd03115 SRP The signal recogni 97.0 0.004 8.7E-08 54.7 8.7 33 151-183 2-37 (173)
386 PRK08154 anaerobic benzoate ca 97.0 0.0016 3.5E-08 63.3 6.7 57 124-181 108-165 (309)
387 TIGR02173 cyt_kin_arch cytidyl 96.9 0.00083 1.8E-08 58.4 4.0 29 151-179 2-30 (171)
388 PLN02674 adenylate kinase 96.9 0.00091 2E-08 63.1 4.4 37 147-185 29-65 (244)
389 PF00437 T2SE: Type II/IV secr 96.9 0.0011 2.3E-08 62.8 4.8 71 147-221 125-206 (270)
390 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0065 1.4E-07 52.3 9.3 28 146-173 23-50 (144)
391 COG0703 AroK Shikimate kinase 96.9 0.00081 1.7E-08 60.1 3.7 32 150-181 3-34 (172)
392 PRK14526 adenylate kinase; Pro 96.9 0.00084 1.8E-08 61.9 4.0 32 152-185 3-34 (211)
393 PRK04220 2-phosphoglycerate ki 96.9 0.0017 3.6E-08 63.0 6.0 33 145-177 88-120 (301)
394 PRK12338 hypothetical protein; 96.9 0.00096 2.1E-08 65.2 4.4 32 147-178 2-33 (319)
395 cd02019 NK Nucleoside/nucleoti 96.9 0.0014 3E-08 49.4 4.4 31 152-182 2-33 (69)
396 PRK14974 cell division protein 96.9 0.0097 2.1E-07 58.7 11.5 36 148-183 139-177 (336)
397 PRK05480 uridine/cytidine kina 96.9 0.0015 3.3E-08 59.3 5.4 37 147-183 4-41 (209)
398 PF01078 Mg_chelatase: Magnesi 96.9 0.00076 1.6E-08 62.0 3.3 24 150-173 23-46 (206)
399 PRK05541 adenylylsulfate kinas 96.9 0.0011 2.3E-08 58.7 4.1 29 146-174 4-32 (176)
400 PRK13764 ATPase; Provisional 96.9 0.0013 2.9E-08 69.4 5.3 26 149-174 257-282 (602)
401 COG2074 2-phosphoglycerate kin 96.9 0.0013 2.9E-08 62.0 4.7 51 128-178 65-118 (299)
402 TIGR02525 plasmid_TraJ plasmid 96.9 0.0023 5.1E-08 63.9 6.8 68 150-221 150-234 (372)
403 PRK00300 gmk guanylate kinase; 96.9 0.0057 1.2E-07 55.1 8.7 28 147-174 3-30 (205)
404 COG4650 RtcR Sigma54-dependent 96.9 0.0023 4.9E-08 61.8 6.3 71 149-225 208-295 (531)
405 PRK12339 2-phosphoglycerate ki 96.9 0.0012 2.7E-08 60.1 4.4 30 148-177 2-31 (197)
406 PF01745 IPT: Isopentenyl tran 96.8 0.0013 2.8E-08 60.8 4.4 39 151-189 3-41 (233)
407 TIGR02688 conserved hypothetic 96.8 0.0019 4.2E-08 65.3 6.0 66 147-225 207-273 (449)
408 cd01130 VirB11-like_ATPase Typ 96.8 0.0026 5.5E-08 57.1 6.3 27 148-174 24-50 (186)
409 COG1066 Sms Predicted ATP-depe 96.8 0.0063 1.4E-07 61.1 9.4 99 148-250 92-207 (456)
410 PRK00771 signal recognition pa 96.8 0.0095 2.1E-07 60.8 11.0 39 147-185 93-134 (437)
411 TIGR00455 apsK adenylylsulfate 96.8 0.0068 1.5E-07 53.9 8.8 41 146-186 15-58 (184)
412 TIGR03499 FlhF flagellar biosy 96.8 0.0045 9.7E-08 59.5 8.1 38 147-184 192-234 (282)
413 COG1373 Predicted ATPase (AAA+ 96.8 0.0097 2.1E-07 60.0 10.8 79 139-224 28-106 (398)
414 COG0324 MiaA tRNA delta(2)-iso 96.8 0.0018 4E-08 62.9 5.4 40 148-187 2-41 (308)
415 PF04665 Pox_A32: Poxvirus A32 96.8 0.02 4.4E-07 53.9 12.2 138 146-311 10-170 (241)
416 PRK03846 adenylylsulfate kinas 96.8 0.0051 1.1E-07 55.6 8.0 39 147-185 22-63 (198)
417 COG4088 Predicted nucleotide k 96.8 0.0027 5.9E-08 58.5 6.0 32 151-182 3-37 (261)
418 TIGR01425 SRP54_euk signal rec 96.8 0.011 2.4E-07 60.1 11.1 38 147-184 98-138 (429)
419 PTZ00035 Rad51 protein; Provis 96.8 0.0073 1.6E-07 59.6 9.5 29 145-173 114-142 (337)
420 PRK04841 transcriptional regul 96.8 0.023 4.9E-07 62.3 14.3 34 148-182 31-64 (903)
421 PF13479 AAA_24: AAA domain 96.8 0.0035 7.5E-08 57.6 6.7 71 148-224 2-80 (213)
422 TIGR02782 TrbB_P P-type conjug 96.8 0.002 4.4E-08 62.4 5.4 69 149-221 132-213 (299)
423 PLN03186 DNA repair protein RA 96.8 0.0053 1.2E-07 60.7 8.4 28 145-172 119-146 (342)
424 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0052 1.1E-07 60.1 8.2 28 145-172 92-119 (316)
425 KOG0480 DNA replication licens 96.8 0.0016 3.4E-08 68.2 4.7 142 150-311 379-542 (764)
426 TIGR00064 ftsY signal recognit 96.7 0.0076 1.6E-07 57.7 9.0 37 147-183 70-109 (272)
427 PRK00889 adenylylsulfate kinas 96.7 0.0051 1.1E-07 54.2 7.3 37 148-184 3-42 (175)
428 COG3283 TyrR Transcriptional r 96.7 0.0021 4.6E-08 63.5 5.1 107 151-278 229-344 (511)
429 PLN02459 probable adenylate ki 96.7 0.0021 4.5E-08 61.2 4.9 31 149-179 29-59 (261)
430 PF01443 Viral_helicase1: Vira 96.7 0.00063 1.4E-08 62.3 1.2 22 152-173 1-22 (234)
431 TIGR01526 nadR_NMN_Atrans nico 96.7 0.0031 6.8E-08 61.8 6.2 36 150-185 163-198 (325)
432 PRK10867 signal recognition pa 96.7 0.014 3.1E-07 59.4 11.1 38 147-184 98-139 (433)
433 cd03287 ABC_MSH3_euk MutS3 hom 96.7 0.018 3.9E-07 53.5 10.8 25 147-171 29-53 (222)
434 cd03285 ABC_MSH2_euk MutS2 hom 96.7 0.026 5.6E-07 52.3 11.8 26 147-172 28-53 (222)
435 cd03223 ABCD_peroxisomal_ALDP 96.7 0.023 4.9E-07 50.0 10.9 28 146-173 24-51 (166)
436 PRK14529 adenylate kinase; Pro 96.6 0.0016 3.6E-08 60.6 3.7 33 152-186 3-35 (223)
437 PRK13900 type IV secretion sys 96.6 0.0034 7.4E-08 61.8 6.1 70 148-221 159-244 (332)
438 cd03228 ABCC_MRP_Like The MRP 96.6 0.0057 1.2E-07 53.9 6.9 28 146-173 25-52 (171)
439 TIGR02788 VirB11 P-type DNA tr 96.6 0.0035 7.7E-08 60.9 6.0 72 146-221 141-227 (308)
440 cd00071 GMPK Guanosine monopho 96.6 0.0091 2E-07 51.1 7.9 24 152-175 2-25 (137)
441 cd03246 ABCC_Protease_Secretio 96.6 0.026 5.6E-07 49.8 11.0 27 147-173 26-52 (173)
442 PRK05439 pantothenate kinase; 96.6 0.003 6.6E-08 61.6 5.4 39 136-174 73-111 (311)
443 cd03230 ABC_DR_subfamily_A Thi 96.6 0.011 2.4E-07 52.2 8.5 27 147-173 24-50 (173)
444 TIGR00554 panK_bact pantothena 96.6 0.0035 7.6E-08 60.6 5.8 38 137-174 50-87 (290)
445 PF00485 PRK: Phosphoribulokin 96.6 0.0019 4.1E-08 58.2 3.7 24 151-174 1-24 (194)
446 TIGR00235 udk uridine kinase. 96.6 0.002 4.3E-08 58.7 3.8 28 148-175 5-32 (207)
447 cd03214 ABC_Iron-Siderophores_ 96.6 0.015 3.3E-07 51.6 9.3 28 146-173 22-49 (180)
448 PF02367 UPF0079: Uncharacteri 96.6 0.0027 5.7E-08 53.8 4.1 36 147-182 13-48 (123)
449 PF00488 MutS_V: MutS domain V 96.6 0.035 7.6E-07 52.0 12.0 24 149-172 43-66 (235)
450 PRK13833 conjugal transfer pro 96.5 0.0039 8.4E-08 61.2 5.6 69 149-221 144-224 (323)
451 TIGR02655 circ_KaiC circadian 96.5 0.012 2.5E-07 60.8 9.4 39 145-183 17-59 (484)
452 PRK10416 signal recognition pa 96.5 0.012 2.5E-07 57.7 8.8 36 147-182 112-150 (318)
453 PF05970 PIF1: PIF1-like helic 96.5 0.0094 2E-07 59.3 8.3 29 147-175 20-48 (364)
454 COG0606 Predicted ATPase with 96.5 0.0016 3.5E-08 66.3 2.8 45 125-172 175-221 (490)
455 TIGR01613 primase_Cterm phage/ 96.5 0.012 2.5E-07 57.0 8.6 121 144-288 71-195 (304)
456 PF13481 AAA_25: AAA domain; P 96.5 0.011 2.5E-07 52.4 7.9 24 150-173 33-56 (193)
457 COG1116 TauB ABC-type nitrate/ 96.5 0.013 2.9E-07 55.2 8.5 26 148-173 28-53 (248)
458 cd01125 repA Hexameric Replica 96.5 0.03 6.5E-07 52.1 11.0 21 152-172 4-24 (239)
459 PRK08099 bifunctional DNA-bind 96.5 0.0051 1.1E-07 62.1 6.2 31 149-179 219-249 (399)
460 cd02028 UMPK_like Uridine mono 96.5 0.0031 6.7E-08 56.4 4.2 34 152-185 2-38 (179)
461 TIGR02655 circ_KaiC circadian 96.5 0.017 3.6E-07 59.7 10.1 40 144-183 258-300 (484)
462 cd02022 DPCK Dephospho-coenzym 96.5 0.0029 6.2E-08 56.4 3.9 31 152-185 2-32 (179)
463 PRK10078 ribose 1,5-bisphospho 96.5 0.0028 6.1E-08 56.7 3.8 28 150-177 3-30 (186)
464 cd03213 ABCG_EPDR ABCG transpo 96.4 0.039 8.5E-07 49.7 11.2 28 146-173 32-59 (194)
465 TIGR02322 phosphon_PhnN phosph 96.4 0.0025 5.4E-08 56.3 3.4 25 151-175 3-27 (179)
466 KOG2543 Origin recognition com 96.4 0.055 1.2E-06 54.0 12.9 51 135-185 16-66 (438)
467 PF09848 DUF2075: Uncharacteri 96.4 0.0028 6E-08 62.6 3.9 23 151-173 3-25 (352)
468 PRK07667 uridine kinase; Provi 96.4 0.005 1.1E-07 55.6 5.3 37 149-185 17-56 (193)
469 cd03239 ABC_SMC_head The struc 96.4 0.018 4E-07 51.5 8.8 25 151-175 24-48 (178)
470 cd02023 UMPK Uridine monophosp 96.4 0.0039 8.4E-08 56.1 4.5 33 152-184 2-35 (198)
471 PF03266 NTPase_1: NTPase; In 96.4 0.0027 5.8E-08 56.5 3.4 22 152-173 2-23 (168)
472 PRK13894 conjugal transfer ATP 96.4 0.0046 1E-07 60.5 5.2 69 149-221 148-228 (319)
473 COG0467 RAD55 RecA-superfamily 96.4 0.0086 1.9E-07 56.4 6.9 41 144-184 18-61 (260)
474 PRK13808 adenylate kinase; Pro 96.4 0.003 6.4E-08 62.2 3.8 28 152-179 3-30 (333)
475 TIGR00017 cmk cytidylate kinas 96.4 0.0039 8.4E-08 57.7 4.3 29 150-178 3-31 (217)
476 cd02024 NRK1 Nicotinamide ribo 96.4 0.0031 6.7E-08 57.1 3.6 27 152-178 2-29 (187)
477 PRK00091 miaA tRNA delta(2)-is 96.4 0.0043 9.3E-08 60.5 4.7 35 148-182 3-37 (307)
478 PRK14730 coaE dephospho-CoA ki 96.4 0.0039 8.4E-08 56.6 4.1 33 151-185 3-35 (195)
479 PTZ00202 tuzin; Provisional 96.4 0.028 6.1E-07 57.4 10.5 39 145-183 282-320 (550)
480 TIGR03263 guanyl_kin guanylate 96.4 0.0026 5.7E-08 56.0 3.0 26 150-175 2-27 (180)
481 PLN02165 adenylate isopentenyl 96.3 0.0042 9.2E-08 61.1 4.5 33 149-181 43-75 (334)
482 PRK13851 type IV secretion sys 96.3 0.0056 1.2E-07 60.6 5.3 70 148-221 161-245 (344)
483 PRK08356 hypothetical protein; 96.3 0.0044 9.6E-08 55.9 4.2 32 150-184 6-37 (195)
484 COG5245 DYN1 Dynein, heavy cha 96.3 0.0079 1.7E-07 68.3 6.7 179 147-349 1492-1697(3164)
485 PRK14733 coaE dephospho-CoA ki 96.3 0.0044 9.6E-08 56.9 4.2 32 148-179 5-36 (204)
486 PF08423 Rad51: Rad51; InterP 96.3 0.0098 2.1E-07 56.4 6.6 30 144-173 33-62 (256)
487 COG5192 BMS1 GTP-binding prote 96.3 0.0088 1.9E-07 62.0 6.5 29 145-173 65-93 (1077)
488 PRK13975 thymidylate kinase; P 96.3 0.0043 9.4E-08 55.4 3.9 28 150-177 3-30 (196)
489 TIGR00959 ffh signal recogniti 96.3 0.019 4.1E-07 58.5 8.9 38 147-184 97-138 (428)
490 COG2874 FlaH Predicted ATPases 96.2 0.049 1.1E-06 50.5 10.5 27 145-171 24-50 (235)
491 PRK00023 cmk cytidylate kinase 96.2 0.0047 1E-07 57.4 4.0 31 149-179 4-34 (225)
492 COG4608 AppF ABC-type oligopep 96.2 0.014 3.1E-07 55.5 7.3 30 145-174 35-64 (268)
493 PRK09825 idnK D-gluconate kina 96.2 0.0045 9.7E-08 55.3 3.7 26 150-175 4-29 (176)
494 COG1855 ATPase (PilT family) [ 96.2 0.0051 1.1E-07 62.4 4.3 43 120-175 247-289 (604)
495 PRK09270 nucleoside triphospha 96.2 0.0091 2E-07 55.3 5.7 29 147-175 31-59 (229)
496 cd01672 TMPK Thymidine monopho 96.2 0.0071 1.5E-07 53.5 4.8 31 151-181 2-35 (200)
497 PLN02199 shikimate kinase 96.2 0.0058 1.2E-07 59.2 4.4 33 149-181 102-134 (303)
498 PRK13765 ATP-dependent proteas 96.2 0.003 6.5E-08 67.2 2.7 26 150-175 51-76 (637)
499 PRK14737 gmk guanylate kinase; 96.2 0.0051 1.1E-07 55.5 3.8 26 148-173 3-28 (186)
500 KOG2228 Origin recognition com 96.2 0.017 3.7E-07 56.8 7.5 136 150-311 50-219 (408)
No 1
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=8.2e-79 Score=589.71 Aligned_cols=335 Identities=70% Similarity=1.064 Sum_probs=313.3
Q ss_pred cccccccCCCCCCCCCCCCcccccchhhhcccCCCCCCCCCceEEeeehhhhhchhhccccccccccCcccccccCCccc
Q 018745 3 AAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGA 82 (351)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (351)
...++++++++++++.|+++|||..+++................+.++.+++||++.++|+++++|+|+||++|++|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~g~g~ 84 (413)
T PLN00020 5 NRASLSLSAVASGASSPPSSAFLGSKVKVSSRRTSSARKSKSSVPVSEEDESKQSEQSSWRGLAQDISGDDYDITRGKGM 84 (413)
T ss_pred cccccccCCCccCCCCCCchhcccccccccccccccccccccccccccccccccccccchhccccccccchhhhhhcCCc
Confidence 45688899999999999999999999988555444455555556777999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcchhhhcccccccccccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccH
Q 018745 83 VDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGK 162 (351)
Q Consensus 83 ~~~~f~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGK 162 (351)
||++|+|++|+|+|++++++++|. .+.++|+|++++||++|+|+|++..|++|||+..+++++|+|+||||||||||
T Consensus 85 vd~lf~~~~~~g~~~~i~~~~~~~---~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGK 161 (413)
T PLN00020 85 VDSLFQGPFGLGTDSDIASSYDYL---QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGK 161 (413)
T ss_pred hhhhhcCCccCCcchhhhhhhHHH---hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCH
Confidence 999999999999999999999877 78888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHH-HhCCceEEEecccccccCCCCCCccchhhhHHH
Q 018745 163 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 241 (351)
Q Consensus 163 T~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~-~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v 241 (351)
|++|++||+++|++++.+++++|.++|+|+++++||++|+.|.+.+ .+++||||||||||+++++++ +++.+++++++
T Consensus 162 TllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~-~~~~tv~~qiV 240 (413)
T PLN00020 162 SFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG-TTQYTVNNQMV 240 (413)
T ss_pred HHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC-CCCcchHHHHH
Confidence 9999999999999999999999999999999999999999997776 378999999999999999986 67888999999
Q ss_pred HHHHHHhhcCCccccCCCCc-ccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeCCCHHHHHHHHHHhhcCCCCCHHH
Q 018745 242 NATLMNIADNPTCVQLPGMY-NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDD 320 (351)
Q Consensus 242 ~~~L~~lld~~~~~~l~~~~-~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~P~~e~R~~Il~~~~~~~~~~~~~ 320 (351)
.++||+++|+|++++++++| ......+|+||+|||+|+.|||||+|+||||++||+|+.++|.+|++.++++++++..+
T Consensus 241 ~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~~~d 320 (413)
T PLN00020 241 NGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGVSRED 320 (413)
T ss_pred HHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCCCHHH
Confidence 99999999999999999988 45567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCccccchhhc
Q 018745 321 IVKLVDTFPGQSIGKFPVPLM 341 (351)
Q Consensus 321 l~~l~~gf~g~dldf~galr~ 341 (351)
+.++++.|+||+||||||||+
T Consensus 321 v~~Lv~~f~gq~~Df~GAlra 341 (413)
T PLN00020 321 VVKLVDTFPGQPLDFFGALRA 341 (413)
T ss_pred HHHHHHcCCCCCchhhhHHHH
Confidence 999999999999999999997
No 2
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-57 Score=427.24 Aligned_cols=314 Identities=25% Similarity=0.354 Sum_probs=273.6
Q ss_pred cccccCCCCCCC-CCC--CCcccccchhhhcccCCCCCCCC-CceEEeeehhh----hhchhhccccccccccCcccccc
Q 018745 5 VPLSFNGSGAAT-SVP--SSSFFGTSLKKVSSRIPPSKVPS-ASFKITAEVDE----NKQTKKDRWKGLAYDESDDQQDI 76 (351)
Q Consensus 5 ~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 76 (351)
.||..|+++.++ ..+ .+.++++..-++..-.-.-+... ....|...+.+ -|+++++||- +..+.|.|+++|
T Consensus 14 ~~L~~~~~~~~~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpryv-vg~~~~~D~~~i 92 (388)
T KOG0651|consen 14 KPLLSHRSISSALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRYV-VGCRRSVDKEKI 92 (388)
T ss_pred hhhhhccchhhHHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcEE-EEcccccchhhh
Confidence 477777777665 333 45666655544422211111111 13344433222 2899999999 999999999999
Q ss_pred cCCcccccccccCCCCCCcchhhhcccccccccccccccccccCCCCCchhHHHHHHHHHHHHhhhCC-CCCCCcEEEEE
Q 018745 77 TRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIW 155 (351)
Q Consensus 77 ~~~~~~~~~~f~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~-~~~~p~glLL~ 155 (351)
++|++|++++++-+++.+.+.++-..+.+.+++.++|+|+++.+.+|+.++|+|++..|+.++++..+ |+++|+|+|||
T Consensus 93 ~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~ 172 (388)
T KOG0651|consen 93 ARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLY 172 (388)
T ss_pred ccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEe
Confidence 99999999999999999999999988999999999999999999999999999999999999999977 99999999999
Q ss_pred cCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccch
Q 018745 156 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 235 (351)
Q Consensus 156 GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~ 235 (351)
||||||||+||++||..+|++|+.++++.+++++.||+.++||++|++| +...||||||||||++.+++. ++.+
T Consensus 173 GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA----~~~~pciifmdeiDAigGRr~--se~T 246 (388)
T KOG0651|consen 173 GPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYA----REVIPCIIFMDEIDAIGGRRF--SEGT 246 (388)
T ss_pred CCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHH----hhhCceEEeehhhhhhccEEe--cccc
Confidence 9999999999999999999999999999999999999999999999999 888999999999999999985 8899
Q ss_pred hhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC
Q 018745 236 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN 313 (351)
Q Consensus 236 ~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~ 313 (351)
+++|++++|||++++ ++++.+...+|++|+|||+|++|||||+||||+|++||. |+...|..|++-+...
T Consensus 247 s~dreiqrTLMeLln--------qmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~ 318 (388)
T KOG0651|consen 247 SSDREIQRTLMELLN--------QMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP 318 (388)
T ss_pred chhHHHHHHHHHHHH--------hhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecccc
Confidence 999999999999999 777779999999999999999999999999999999996 9999999997665433
Q ss_pred ----CCCCHHHHHHHhcCCCCCCc
Q 018745 314 ----DNVADDDIVKLVDTFPGQSI 333 (351)
Q Consensus 314 ----~~~~~~~l~~l~~gf~g~dl 333 (351)
..++++.+.+++++|.|+++
T Consensus 319 i~~~Geid~eaivK~~d~f~gad~ 342 (388)
T KOG0651|consen 319 IDFHGEIDDEAILKLVDGFNGADL 342 (388)
T ss_pred ccccccccHHHHHHHHhccChHHH
Confidence 47789999999999999985
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-44 Score=344.21 Aligned_cols=179 Identities=24% Similarity=0.346 Sum_probs=166.6
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 143 ~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
..|+++|+|+|||||||||||+||+|+|++.+++|+.+.+++|+.+|.|+.++++|++|..| +..+||||||||||
T Consensus 179 ~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA----rekaPsIIFiDEID 254 (406)
T COG1222 179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELA----REKAPSIIFIDEID 254 (406)
T ss_pred HcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHH----hhcCCeEEEEechh
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCH
Q 018745 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 300 (351)
Q Consensus 223 ~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~ 300 (351)
+++++|. ...+...+.++.|+|+|+. |++++ +...+|-||++||+++.|||||+||||||+.|++ |+.
T Consensus 255 AIg~kR~--d~~t~gDrEVQRTmleLL~-----qlDGF---D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 255 AIGAKRF--DSGTSGDREVQRTMLELLN-----QLDGF---DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred hhhcccc--cCCCCchHHHHHHHHHHHH-----hccCC---CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCH
Confidence 9999987 3456678899999999999 55555 8899999999999999999999999999999996 999
Q ss_pred HHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 301 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 301 e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
+.|.+|++.|.++ ++++++.+++++++|+|++|.-
T Consensus 325 ~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlka 363 (406)
T COG1222 325 EGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKA 363 (406)
T ss_pred HHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHH
Confidence 9999999988865 5788999999999999999864
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-39 Score=326.37 Aligned_cols=277 Identities=19% Similarity=0.250 Sum_probs=202.6
Q ss_pred CCCceEEee-ehhhhhchhh-ccccccccccCcccccccCCcccccccccCCCCCCcchhhhcccccccccccccccccc
Q 018745 41 PSASFKITA-EVDENKQTKK-DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNT 118 (351)
Q Consensus 41 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 118 (351)
++..+.+.. +..++-.+-| .|-+...+|.++.+++.....|-.-++.+..- .|.........++ +.- ..+|..+
T Consensus 117 k~~~~e~~sn~~~kkl~s~~~~r~~~~~~d~~~k~~~~~~~~~~k~~l~~~~a-~~~~r~~~~~~~~--~~s-nv~f~di 192 (802)
T KOG0733|consen 117 KNDIIEVDSNEANKKLLSLWAKRAEKRTEDSKPKNHAEMIVPGTKVSLHLSLA-RGILRQFVEGLEF--PES-NVSFSDI 192 (802)
T ss_pred cCcceeecchHHHHHHHHHHHhhcccCCccccccccccccCcchhhhhhhhhc-chhhhhhhcccCC--CCC-Ccchhhc
Confidence 344455555 3333322333 35566667777777665555554334443221 2323333222221 111 2245665
Q ss_pred cCCCCCchhHHHHHHHHHH-HHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHH
Q 018745 119 IDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 197 (351)
Q Consensus 119 ~~~~~i~~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~i 197 (351)
.|-...-.++. .++.|+. .+.+...|+.+|+|+|||||||||||+||++||.+++++|+.+++.++++++.|++++.|
T Consensus 193 GG~d~~~~el~-~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkki 271 (802)
T KOG0733|consen 193 GGLDKTLAELC-ELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKI 271 (802)
T ss_pred cChHHHHHHHH-HHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHH
Confidence 55322222222 3344443 344456799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCC-CCCceEEEEeC
Q 018745 198 RQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGN 276 (351)
Q Consensus 198 r~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~-~~~v~II~TTN 276 (351)
|++|+.| +...|||+||||||++.++|. ...+...+.+.++|+..+| ++..... ...|+||++||
T Consensus 272 RelF~~A----~~~aPcivFiDeIDAI~pkRe--~aqreMErRiVaQLlt~mD--------~l~~~~~~g~~VlVIgATn 337 (802)
T KOG0733|consen 272 RELFDQA----KSNAPCIVFIDEIDAITPKRE--EAQREMERRIVAQLLTSMD--------ELSNEKTKGDPVLVIGATN 337 (802)
T ss_pred HHHHHHH----hccCCeEEEeecccccccchh--hHHHHHHHHHHHHHHHhhh--------cccccccCCCCeEEEecCC
Confidence 9999999 899999999999999999997 3455566666678888888 4433332 56799999999
Q ss_pred CCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCcccc
Q 018745 277 DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 277 ~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf~ 336 (351)
+|+.|||||+|+||||+.|.+ |+..+|.+||+.++++ ..+++..|+++|.||+|+||...
T Consensus 338 RPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL 403 (802)
T KOG0733|consen 338 RPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMAL 403 (802)
T ss_pred CCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHH
Confidence 999999999999999999996 9999999999988874 36779999999999999998743
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-40 Score=331.38 Aligned_cols=206 Identities=22% Similarity=0.350 Sum_probs=175.6
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhh-hCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCC
Q 018745 114 NLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (351)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l-~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge 192 (351)
+|+++.+-..|-.+++..++..+.+.-+ +..|+..|.|+|||||||||||+||+|+|++.|++|+.+.+.+|+++|+||
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE 588 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE 588 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence 4466666556667777777776665443 456999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEE
Q 018745 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (351)
Q Consensus 193 ~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II 272 (351)
+++.+|++|.+| +...||||||||||+++++|+. ....+..+.+++.|. +|++..++.+|.||
T Consensus 589 SErAVR~vFqRA----R~saPCVIFFDEiDaL~p~R~~-~~s~~s~RvvNqLLt------------ElDGl~~R~gV~vi 651 (802)
T KOG0733|consen 589 SERAVRQVFQRA----RASAPCVIFFDEIDALVPRRSD-EGSSVSSRVVNQLLT------------ELDGLEERRGVYVI 651 (802)
T ss_pred HHHHHHHHHHHh----hcCCCeEEEecchhhcCcccCC-CCchhHHHHHHHHHH------------HhcccccccceEEE
Confidence 999999999999 9999999999999999999973 334445555543322 44555889999999
Q ss_pred EEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhc------CCCCCHHHHHHHhc--CCCCCCcccc
Q 018745 273 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR------NDNVADDDIVKLVD--TFPGQSIGKF 336 (351)
Q Consensus 273 ~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~------~~~~~~~~l~~l~~--gf~g~dldf~ 336 (351)
++||+|+.+|||++||||||+.+++ |+.++|.+|++.+.+ ...++++.|+..++ +|+|+||...
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaL 725 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAAL 725 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHH
Confidence 9999999999999999999999997 999999999999998 24778999999877 9999998643
No 6
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-38 Score=323.72 Aligned_cols=205 Identities=21% Similarity=0.369 Sum_probs=169.5
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhh-hCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCC
Q 018745 114 NLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (351)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l-~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge 192 (351)
+|+++.|-..+..++.+.+...+..... ...|+.+|+|||||||||||||++|+|+|++++++|+.+++.+|.++|+|+
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGe 511 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGE 511 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCc
Confidence 4566555544555555544443332222 235899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEE
Q 018745 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (351)
Q Consensus 193 ~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II 272 (351)
+++.||++|+.| +...||||||||||++++.|+++.. .+..+.++ +|+.-+| |+ ....+|.||
T Consensus 512 SEr~ir~iF~kA----R~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVls-qLLtEmD--------G~---e~~k~V~Vi 574 (693)
T KOG0730|consen 512 SERAIREVFRKA----RQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLS-QLLTEMD--------GL---EALKNVLVI 574 (693)
T ss_pred hHHHHHHHHHHH----hhcCCeEEehhhHHhHhhccCCCcc-chHHHHHH-HHHHHcc--------cc---cccCcEEEE
Confidence 999999999999 9999999999999999999974333 44555443 4444333 44 778899999
Q ss_pred EEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 273 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 273 ~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
++||+|+.||+||+||||||+.+++ |+.+.|.+|++.++++ +.++.+.+++.|++|+|+||.-
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~ 643 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVA 643 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHH
Confidence 9999999999999999999999996 9999999999988876 4677899999999999999864
No 7
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=302.55 Aligned_cols=216 Identities=19% Similarity=0.238 Sum_probs=172.7
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhhh--CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc
Q 018745 109 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (351)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~--~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~ 186 (351)
...+.+|+++-|-.....++. . +++..|+--+ ..|.+.|+||||.||||||||+||+|||.+.+++|+..+++++.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELe-E-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELE-E-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhcccccccccChHHHHHHHH-H-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 334555677655332233332 2 2233333322 35899999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCC
Q 018745 187 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 266 (351)
Q Consensus 187 s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~ 266 (351)
..++|...+.+|++|..| +..+||||||||||++.++|....+. ...+||-+++- +|++...+
T Consensus 375 Em~VGvGArRVRdLF~aA----k~~APcIIFIDEiDavG~kR~~~~~~-----y~kqTlNQLLv--------EmDGF~qN 437 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAA----KARAPCIIFIDEIDAVGGKRNPSDQH-----YAKQTLNQLLV--------EMDGFKQN 437 (752)
T ss_pred hhhhcccHHHHHHHHHHH----HhcCCeEEEEechhhhcccCCccHHH-----HHHHHHHHHHH--------HhcCcCcC
Confidence 999999999999999999 99999999999999999998632221 33444445554 55555889
Q ss_pred CCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCcccc---c
Q 018745 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGKF---P 337 (351)
Q Consensus 267 ~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf~---g 337 (351)
.+|+||++||.|+.||+||+||||||+.+.+ |+...|.+|++.++.+ +++++.-|+.-+.||+|+||.=. .
T Consensus 438 eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqA 517 (752)
T KOG0734|consen 438 EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQA 517 (752)
T ss_pred CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999997 8888999998888765 58889999999999999998632 5
Q ss_pred hhhccC
Q 018745 338 VPLMMQ 343 (351)
Q Consensus 338 alr~~q 343 (351)
||.+.+
T Consensus 518 AlkAa~ 523 (752)
T KOG0734|consen 518 ALKAAV 523 (752)
T ss_pred HHHHHh
Confidence 555543
No 8
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-36 Score=308.25 Aligned_cols=205 Identities=19% Similarity=0.307 Sum_probs=167.2
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChH
Q 018745 115 LDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA 194 (351)
Q Consensus 115 ~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~ 194 (351)
|+++.|-..++.+.+|.+.......-+...|.++..|||||||||||||.+|+|||.++..+|+.|.+.+|.++|+|++|
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE 750 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSE 750 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchH
Confidence 44544444444455555555444444555688888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecccccccCCCCC-CccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEE
Q 018745 195 KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGG-TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273 (351)
Q Consensus 195 ~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~-~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~ 273 (351)
+++|++|++| +..+|||||+||+|++++.|+. +....+..|.+.+.|.+ +| ++.+. ....|+||+
T Consensus 751 ~NVR~VFerA----R~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAE-LD--------gls~~-~s~~VFViG 816 (953)
T KOG0736|consen 751 ENVREVFERA----RSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAE-LD--------GLSDS-SSQDVFVIG 816 (953)
T ss_pred HHHHHHHHHh----hccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHH-hh--------cccCC-CCCceEEEe
Confidence 9999999999 9999999999999999999974 34567777777755544 34 55222 567899999
Q ss_pred EeCCCCCCcchhccCCcceEEEeC---CCHHHHHHHHHHhhcC----CCCCHHHHHHHh-cCCCCCCc
Q 018745 274 TGNDFSTLYAPLIRDGRMEKFYWA---PTREDRIGVCKGIFRN----DNVADDDIVKLV-DTFPGQSI 333 (351)
Q Consensus 274 TTN~~~~Ld~aLlR~gRfd~~i~~---P~~e~R~~Il~~~~~~----~~~~~~~l~~l~-~gf~g~dl 333 (351)
+||||+.|||||+||||||+.+|+ -+.+.+..|++++.++ ++++...|++.+ ..|+|+|+
T Consensus 817 ATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADl 884 (953)
T KOG0736|consen 817 ATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADL 884 (953)
T ss_pred cCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHH
Confidence 999999999999999999999998 4555688888888765 578888999887 57999986
No 9
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-34 Score=267.12 Aligned_cols=181 Identities=24% Similarity=0.317 Sum_probs=162.2
Q ss_pred hCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 018745 142 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (351)
Q Consensus 142 ~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEI 221 (351)
+.-|+.+|+|+|||||||||||+||+++|+.....|+.+.++++..+|.|+..+++|++|+.| +.++|+|||||||
T Consensus 182 ~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrla----kenapsiifidei 257 (408)
T KOG0727|consen 182 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA----KENAPSIIFIDEI 257 (408)
T ss_pred HHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHH----hccCCcEEEeehh
Confidence 455999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CC
Q 018745 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 299 (351)
Q Consensus 222 D~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~ 299 (351)
|+++.+|. ...+...+.++..|+++++ .|++.+...+|-||++||+.++|||||+||||+|+.|+. |+
T Consensus 258 daiatkrf--daqtgadrevqril~elln--------qmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpd 327 (408)
T KOG0727|consen 258 DAIATKRF--DAQTGADREVQRILIELLN--------QMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred hhHhhhhc--cccccccHHHHHHHHHHHH--------hccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCc
Confidence 99999886 3456677888999999999 555558899999999999999999999999999999995 88
Q ss_pred HHHHHHHHHHhhc----CCCCCHHHHHHHhcCCCCCCcccc
Q 018745 300 REDRIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 300 ~e~R~~Il~~~~~----~~~~~~~~l~~l~~gf~g~dldf~ 336 (351)
+.++.-++..+.. .+.++.+++....+..+|++|.-+
T Consensus 328 rrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~ai 368 (408)
T KOG0727|consen 328 RRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAI 368 (408)
T ss_pred hhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHH
Confidence 8888777655554 467778888888899999998643
No 10
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-34 Score=264.09 Aligned_cols=196 Identities=23% Similarity=0.351 Sum_probs=169.9
Q ss_pred hhHHHHHHHHHH-HHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHH
Q 018745 126 PAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 204 (351)
Q Consensus 126 ~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A 204 (351)
+++.+.++..+. +.-+...|+++|+|+|+|||||||||++|+++|.+.+.+|+-+.+..|+..|.|+..+++|+.|..|
T Consensus 181 qELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLA 260 (424)
T KOG0652|consen 181 QELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALA 260 (424)
T ss_pred HHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHh
Confidence 344444444332 2223346999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcch
Q 018745 205 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (351)
Q Consensus 205 ~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~a 284 (351)
+..+|+||||||+|++..+|.+ ......+.++.+++++++ |++++ ....+|-||++||+.+-||||
T Consensus 261 ----KEkaP~IIFIDElDAIGtKRfD--Sek~GDREVQRTMLELLN-----QLDGF---ss~~~vKviAATNRvDiLDPA 326 (424)
T KOG0652|consen 261 ----KEKAPTIIFIDELDAIGTKRFD--SEKAGDREVQRTMLELLN-----QLDGF---SSDDRVKVIAATNRVDILDPA 326 (424)
T ss_pred ----hccCCeEEEEechhhhcccccc--ccccccHHHHHHHHHHHH-----hhcCC---CCccceEEEeecccccccCHH
Confidence 8999999999999999998863 344567888999999999 66666 888999999999999999999
Q ss_pred hccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 285 LIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 285 LlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
|+|.||+|+.|+. |+.+.|..|++.|.++ +.+++++++.-++.|.|+.+..
T Consensus 327 LlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKA 383 (424)
T KOG0652|consen 327 LLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKA 383 (424)
T ss_pred HhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhee
Confidence 9999999999995 9999999999888765 4777999999999999998754
No 11
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=271.65 Aligned_cols=205 Identities=23% Similarity=0.289 Sum_probs=167.3
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCC-cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCCh
Q 018745 115 LDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVP-LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (351)
Q Consensus 115 ~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p-~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~ 193 (351)
++++.+-....+-+.+.++..+.-.-+. .|+..| +|||++||||||||+||+|||.+++.+|+.|+.+.+.++|-|++
T Consensus 211 W~DIagl~~AK~lL~EAVvlPi~mPe~F-~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeS 289 (491)
T KOG0738|consen 211 WDDIAGLHEAKKLLKEAVVLPIWMPEFF-KGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGES 289 (491)
T ss_pred hHhhcchHHHHHHHHHHHhhhhhhHHHH-hhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccch
Confidence 4565554444444555555555433322 367777 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCC-CCceEE
Q 018745 194 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN-PRVPII 272 (351)
Q Consensus 194 ~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~-~~v~II 272 (351)
++++|-+|..| +..+|+.|||||||+++++|+++.+.. ..+.+...|+..+| ++.+..+. ..|.|+
T Consensus 290 EKlvRlLFemA----RfyAPStIFiDEIDslcs~RG~s~EHE-aSRRvKsELLvQmD--------G~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 290 EKLVRLLFEMA----RFYAPSTIFIDEIDSLCSQRGGSSEHE-ASRRVKSELLVQMD--------GVQGTLENSKVVMVL 356 (491)
T ss_pred HHHHHHHHHHH----HHhCCceeehhhHHHHHhcCCCccchh-HHHHHHHHHHHHhh--------ccccccccceeEEEE
Confidence 99999999999 999999999999999999998654443 44445555565556 77555554 447888
Q ss_pred EEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 273 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 273 ~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
++||.|+.||.||+| ||++.|++ |+.+.|..+++..++. +.++.++|++.++||+|+||.-
T Consensus 357 AATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~n 423 (491)
T KOG0738|consen 357 AATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITN 423 (491)
T ss_pred eccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHH
Confidence 999999999999999 89999995 9999999999888865 4777999999999999999853
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-33 Score=257.02 Aligned_cols=179 Identities=20% Similarity=0.305 Sum_probs=162.0
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 143 ~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
..|+..|+|+|||||||||||.||+++|.+..+.|+.+++++|..+|.|+.++++|++|-.| +.++|+|||+||||
T Consensus 175 aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvma----rehapsiifmdeid 250 (404)
T KOG0728|consen 175 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEID 250 (404)
T ss_pred hcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHH----HhcCCceEeeeccc
Confidence 45999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCH
Q 018745 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 300 (351)
Q Consensus 223 ~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~ 300 (351)
++.+.|..+ .......++.+++++++ |++++ ....++-||++||+.+-|||||+||||.|+.|+. |+.
T Consensus 251 sigs~r~e~--~~ggdsevqrtmlelln-----qldgf---eatknikvimatnridild~allrpgridrkiefp~p~e 320 (404)
T KOG0728|consen 251 SIGSSRVES--GSGGDSEVQRTMLELLN-----QLDGF---EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 320 (404)
T ss_pred ccccccccC--CCCccHHHHHHHHHHHH-----hcccc---ccccceEEEEeccccccccHhhcCCCcccccccCCCCCH
Confidence 999888522 23356678889999999 66666 8889999999999999999999999999999996 899
Q ss_pred HHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccc
Q 018745 301 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 301 e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf 335 (351)
+.|.+|++.+.++ .+++...+++.+.|-+|+++.-
T Consensus 321 ~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~ 359 (404)
T KOG0728|consen 321 EARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKG 359 (404)
T ss_pred HHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhh
Confidence 9999999888765 4788999999999999998753
No 13
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-33 Score=292.27 Aligned_cols=209 Identities=20% Similarity=0.245 Sum_probs=168.6
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhh--hCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCC
Q 018745 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFM--SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (351)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l--~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~ 190 (351)
-.|.+..+-.++..+++|- ++..||-. ...|++.|+|+||+||||||||+||+|+|.+.|++|+.+++++++..+.
T Consensus 308 V~FkDVAG~deAK~El~E~--V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEF--VKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV 385 (774)
T ss_pred CccccccCcHHHHHHHHHH--HHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence 3466666665666666542 33333332 2469999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCce
Q 018745 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (351)
Q Consensus 191 Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~ 270 (351)
|.....+|++|..| +..+|||+||||||++...|+|.. ....++.-.++|.+++- +|++......|+
T Consensus 386 g~~asrvr~lf~~a----r~~aP~iifideida~~~~r~G~~-~~~~~~e~e~tlnQll~--------emDgf~~~~~vi 452 (774)
T KOG0731|consen 386 GVGASRVRDLFPLA----RKNAPSIIFIDEIDAVGRKRGGKG-TGGGQDEREQTLNQLLV--------EMDGFETSKGVI 452 (774)
T ss_pred ccchHHHHHHHHHh----hccCCeEEEecccccccccccccc-cCCCChHHHHHHHHHHH--------HhcCCcCCCcEE
Confidence 99899999999999 999999999999999999884211 11112222334445444 555557778899
Q ss_pred EEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCC-----CHHHHHHHhcCCCCCCcccc
Q 018745 271 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV-----ADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 271 II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~-----~~~~l~~l~~gf~g~dldf~ 336 (351)
++++||+++.||+||+||||||+.+.+ |+...|.+|++.|++...+ ++..++.++.+|+|+||.+.
T Consensus 453 ~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~ 525 (774)
T KOG0731|consen 453 VLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANL 525 (774)
T ss_pred EEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhh
Confidence 999999999999999999999999996 9999999999999876544 35569999999999998764
No 14
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=265.27 Aligned_cols=180 Identities=21% Similarity=0.330 Sum_probs=162.3
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 143 ~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
..|+++|+|++|||+||||||.||+|+|+....+|+.+.+++|..+|.|+..+++|++|+.| ..++|+|+||||||
T Consensus 213 emGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA----~e~apSIvFiDEId 288 (440)
T KOG0726|consen 213 EMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EEHAPSIVFIDEID 288 (440)
T ss_pred HcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHH----HhcCCceEEeehhh
Confidence 44999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred cccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCH
Q 018745 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 300 (351)
Q Consensus 223 ~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~ 300 (351)
++..+|. ...+...+.++++++++++ |++++ +.+..|-||++||+.++|||||+||||.|+.|+. |+.
T Consensus 289 AiGtKRy--ds~SggerEiQrtmLELLN-----QldGF---dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe 358 (440)
T KOG0726|consen 289 AIGTKRY--DSNSGGEREIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 358 (440)
T ss_pred hhccccc--cCCCccHHHHHHHHHHHHH-----hccCc---cccCCeEEEEecccccccCHhhcCCCccccccccCCCch
Confidence 9999987 3345567888999999999 66676 7788899999999999999999999999999996 888
Q ss_pred HHHHHHHHHhhc----CCCCCHHHHHHHhcCCCCCCcccc
Q 018745 301 EDRIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 301 e~R~~Il~~~~~----~~~~~~~~l~~l~~gf~g~dldf~ 336 (351)
..+..|+..|.. .+.++++.+..--+.|+|+||...
T Consensus 359 ~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAi 398 (440)
T KOG0726|consen 359 KTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAI 398 (440)
T ss_pred hhhceeEEEeecccchhccccHHHHhhcccccccccHHHH
Confidence 889999766654 357788888888899999999764
No 15
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-33 Score=284.47 Aligned_cols=173 Identities=20% Similarity=0.349 Sum_probs=151.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
.++.+.|||||||||||||+||.++|..++..|+.+.+.+|.++|.|.++.++|++|.+| +..+|||||+||+|++
T Consensus 697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA----~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERA----QSAKPCILFFDEFDSI 772 (952)
T ss_pred CcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHh----hccCCeEEEecccccc
Confidence 567788999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEe--CCCHHH
Q 018745 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 302 (351)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~--~P~~e~ 302 (351)
+++|+. ....+..+.+++.|. ++++.+...+|.|+++|.+|+.|||||+||||+|+.++ .|+..+
T Consensus 773 APkRGh-DsTGVTDRVVNQlLT------------elDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 773 APKRGH-DSTGVTDRVVNQLLT------------ELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CcccCC-CCCCchHHHHHHHHH------------hhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 999972 222333444432222 44455678899999999999999999999999999999 599999
Q ss_pred HHHHHHHhhc----CCCCCHHHHHHHhcCCCCCCcc
Q 018745 303 RIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 303 R~~Il~~~~~----~~~~~~~~l~~l~~gf~g~dld 334 (351)
|.+|++.+.. .+.++++.++..++||+|+||.
T Consensus 840 Rl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq 875 (952)
T KOG0735|consen 840 RLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ 875 (952)
T ss_pred HHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH
Confidence 9999887754 4688899999999999999986
No 16
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.2e-32 Score=259.05 Aligned_cols=204 Identities=18% Similarity=0.232 Sum_probs=166.5
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChH
Q 018745 115 LDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA 194 (351)
Q Consensus 115 ~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~ 194 (351)
++++.|-....+++.+.++..+...-+...+.++=+|||||||||||||+||+|+|.+.+.+|+.++.++|+++|.|+++
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESE 211 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 211 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHH
Confidence 35656655566777777777776666555455555999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEE
Q 018745 195 KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT 274 (351)
Q Consensus 195 ~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~T 274 (351)
++++++|+.| +.++|+||||||||++++.|++ .+.....++-.+.|.++ .+. -....+|+|+++
T Consensus 212 kLVknLFemA----Re~kPSIIFiDEiDslcg~r~e-nEseasRRIKTEfLVQM---------qGV--G~d~~gvLVLgA 275 (439)
T KOG0739|consen 212 KLVKNLFEMA----RENKPSIIFIDEIDSLCGSRSE-NESEASRRIKTEFLVQM---------QGV--GNDNDGVLVLGA 275 (439)
T ss_pred HHHHHHHHHH----HhcCCcEEEeehhhhhccCCCC-CchHHHHHHHHHHHHhh---------hcc--ccCCCceEEEec
Confidence 9999999999 9999999999999999999873 33444445544444332 132 134678999999
Q ss_pred eCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC-----CCCHHHHHHHhcCCCCCCcccc
Q 018745 275 GNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND-----NVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 275 TN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~-----~~~~~~l~~l~~gf~g~dldf~ 336 (351)
||-|+.||.|++| ||++.||+ |+..+|..+++.++... ..++..++..++||+|+||...
T Consensus 276 TNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisiv 342 (439)
T KOG0739|consen 276 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIV 342 (439)
T ss_pred CCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEE
Confidence 9999999999999 89999996 88889999998888654 3347789999999999999754
No 17
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=1.6e-31 Score=272.18 Aligned_cols=174 Identities=23% Similarity=0.353 Sum_probs=149.0
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
.|++.|+|||||||||||||++|+++|++++.+++.++.+.+.+++.|++++.++++|..| +..+||||||||||+
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A----~~~~P~IL~IDEID~ 329 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIA----EALSPCILWIDEIDK 329 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHH----HhcCCcEEEehhhhh
Confidence 4789999999999999999999999999999999999999999999999999999999998 788999999999999
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHH
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 301 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e 301 (351)
++..+.+.......++. ..+|+..++ ....+++||+|||+++.||++++|+||||+.+++ |+.+
T Consensus 330 ~~~~~~~~~d~~~~~rv-l~~lL~~l~-------------~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 330 AFSNSESKGDSGTTNRV-LATFITWLS-------------EKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hhccccCCCCchHHHHH-HHHHHHHHh-------------cCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 88754322222333343 345555555 2246789999999999999999999999999996 9999
Q ss_pred HHHHHHHHhhcCC------CCCHHHHHHHhcCCCCCCccc
Q 018745 302 DRIGVCKGIFRND------NVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 302 ~R~~Il~~~~~~~------~~~~~~l~~l~~gf~g~dldf 335 (351)
+|.+|++.++.+. +.+.+.+++.++||+|+||.-
T Consensus 396 eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~ 435 (489)
T CHL00195 396 EREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQ 435 (489)
T ss_pred HHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHH
Confidence 9999999888653 456889999999999999973
No 18
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.3e-32 Score=277.24 Aligned_cols=223 Identities=21% Similarity=0.260 Sum_probs=173.1
Q ss_pred CCCCcchhhhcccccccccccccccccccCCCCCchhHHHHHHHHHH--HHhhhCCCCCCCcEEEEEcCCCccHHHHHHH
Q 018745 91 MGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHIT--KNFMSLPNIKVPLILGIWGGKGQGKSFQCEL 168 (351)
Q Consensus 91 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~i~--k~~l~~~~~~~p~glLL~GppGtGKT~LA~a 168 (351)
|+.|..++.+...+ ...-+|.+..|.....+++.+ ++.-.. ++|.. .|.+.|+|+||+||||||||+||++
T Consensus 130 ~~~gkskak~~~~~-----~~~v~F~DVAG~dEakeel~E-iVdfLk~p~ky~~-lGakiPkGvlLvGpPGTGKTLLAkA 202 (596)
T COG0465 130 FSFGKSKAKLYLED-----QVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQA-LGAKIPKGVLLVGPPGTGKTLLAKA 202 (596)
T ss_pred cCCChHHHHHhccc-----ccCcChhhhcCcHHHHHHHHH-HHHHHhCchhhHh-cccccccceeEecCCCCCcHHHHHH
Confidence 44555555543221 222345665654333333332 221111 22322 3679999999999999999999999
Q ss_pred HHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHh
Q 018745 169 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 248 (351)
Q Consensus 169 IA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~l 248 (351)
+|.+.+++|+.+++++++..++|.+...+|++|.+| ++.+|||+||||||++...|+.. ....+....+||-++
T Consensus 203 vAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qA----kk~aP~IIFIDEiDAvGr~Rg~g--~GggnderEQTLNQl 276 (596)
T COG0465 203 VAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQA----KKNAPCIIFIDEIDAVGRQRGAG--LGGGNDEREQTLNQL 276 (596)
T ss_pred HhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHh----hccCCCeEEEehhhhcccccCCC--CCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999888522 222333334455555
Q ss_pred hcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHH
Q 018745 249 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIV 322 (351)
Q Consensus 249 ld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~ 322 (351)
+- +|++...+..|.+|++||+|+.+||||+||||||+.+.+ |+-..|.+|++.|.+.. .+++..++
T Consensus 277 Lv--------EmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iA 348 (596)
T COG0465 277 LV--------EMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIA 348 (596)
T ss_pred Hh--------hhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHh
Confidence 55 666667788999999999999999999999999999997 99999999999887653 57788999
Q ss_pred HHhcCCCCCCcc
Q 018745 323 KLVDTFPGQSIG 334 (351)
Q Consensus 323 ~l~~gf~g~dld 334 (351)
+.+.||+|+||.
T Consensus 349 r~tpGfsGAdL~ 360 (596)
T COG0465 349 RGTPGFSGADLA 360 (596)
T ss_pred hhCCCcccchHh
Confidence 999999999985
No 19
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=274.38 Aligned_cols=175 Identities=24% Similarity=0.396 Sum_probs=152.3
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
+.++|+|+|||||||||||+||+++|++++.+|+.+..+++.++|+|+++++++++|..| ++.+||||||||+|++
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A----~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKA----RKLAPSIIFIDEIDSL 347 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHH----HcCCCcEEEEEchhhh
Confidence 788999999999999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred cCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHH
Q 018745 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 302 (351)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~ 302 (351)
+..|+.+. .... ..+..+|+..++ ++ ....+|.||+|||+++.+|+|++||||||+.+++ |+.++
T Consensus 348 ~~~r~~~~-~~~~-~r~~~~lL~~~d--------~~---e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 348 ASGRGPSE-DGSG-RRVVGQLLTELD--------GI---EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred hccCCCCC-chHH-HHHHHHHHHHhc--------CC---CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 99986322 1111 233334444444 33 6677799999999999999999999999999996 99999
Q ss_pred HHHHHHHhhcC------CCCCHHHHHHHhcCCCCCCcccc
Q 018745 303 RIGVCKGIFRN------DNVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 303 R~~Il~~~~~~------~~~~~~~l~~l~~gf~g~dldf~ 336 (351)
|.+|++.++.. .+++.+.+++.+++|+|+||...
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i 454 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAAL 454 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHH
Confidence 99999999873 35778899999999999999755
No 20
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-32 Score=253.75 Aligned_cols=177 Identities=22% Similarity=0.338 Sum_probs=157.9
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
.|+.+|+|+|||||||||||++|+++|+..+..|+.+-+++|..+|+|+..+++|++|+.| +..+-||||+||||+
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~ma----rtkkaciiffdeida 281 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA----RTKKACIIFFDEIDA 281 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHh----cccceEEEEeecccc
Confidence 5999999999999999999999999999999999999999999999999999999999999 888899999999999
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEe--CCCHH
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~--~P~~e 301 (351)
+.+.|.+.. ....-.++.++++++. |++++ +.+.++-|+++||+|++|||||+||||+|+.++ +|+.+
T Consensus 282 iggarfddg--~ggdnevqrtmleli~-----qldgf---dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdle 351 (435)
T KOG0729|consen 282 IGGARFDDG--AGGDNEVQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLE 351 (435)
T ss_pred ccCccccCC--CCCcHHHHHHHHHHHH-----hccCC---CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCccc
Confidence 998875322 2233456788889988 66666 889999999999999999999999999999999 59999
Q ss_pred HHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcc
Q 018745 302 DRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 302 ~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dld 334 (351)
.|..|++.|.+.- ++.++-++.++..-+|++|.
T Consensus 352 grt~i~kihaksmsverdir~ellarlcpnstgaeir 388 (435)
T KOG0729|consen 352 GRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIR 388 (435)
T ss_pred ccceeEEEeccccccccchhHHHHHhhCCCCcchHHH
Confidence 9999998887653 55588999999999998874
No 21
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5e-32 Score=269.73 Aligned_cols=187 Identities=19% Similarity=0.295 Sum_probs=155.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC-ccEEeccCccccCCCCChHHHHHHHHHHHHHHHH----hCCceEEEe
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLMI 218 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~-~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~----~~~p~IL~I 218 (351)
.|++.-+|||||||||||||.+||.|.+-++. ++-+|++.+++++|+|+++.++|.+|..|.+.-+ ...-.||++
T Consensus 251 lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIF 330 (744)
T KOG0741|consen 251 LGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIF 330 (744)
T ss_pred cCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEe
Confidence 48899999999999999999999999999965 6889999999999999999999999999976665 234579999
Q ss_pred cccccccCCCCCCcc-chhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC
Q 018745 219 NDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 297 (351)
Q Consensus 219 DEID~l~~~r~~~~~-~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~ 297 (351)
||||+++..|+.... ..+..+.+++ |+. .|++.+...+++||+.||+.+.||.||+|||||+..+++
T Consensus 331 DEiDAICKqRGS~~g~TGVhD~VVNQ-LLs-----------KmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 331 DEIDAICKQRGSMAGSTGVHDTVVNQ-LLS-----------KMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEI 398 (744)
T ss_pred hhhHHHHHhcCCCCCCCCccHHHHHH-HHH-----------hcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEE
Confidence 999999988863222 2333333332 111 566668889999999999999999999999999999995
Q ss_pred --CCHHHHHHHHHHhhcC--------CCCCHHHHHHHhcCCCCCCccccchhhccCC
Q 018745 298 --PTREDRIGVCKGIFRN--------DNVADDDIVKLVDTFPGQSIGKFPVPLMMQT 344 (351)
Q Consensus 298 --P~~e~R~~Il~~~~~~--------~~~~~~~l~~l~~gf~g~dldf~galr~~q~ 344 (351)
|++..|.+|++.|.+. .+++.++++.++..|+|+.|+ |-+++.|+
T Consensus 399 sLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle--glVksA~S 453 (744)
T KOG0741|consen 399 SLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE--GLVKSAQS 453 (744)
T ss_pred eCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH--HHHHHHHH
Confidence 9999999998777653 588899999999999999997 55555544
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=7.8e-31 Score=261.51 Aligned_cols=210 Identities=18% Similarity=0.237 Sum_probs=164.5
Q ss_pred cccccccCCCCCchhHHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCC
Q 018745 113 YNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (351)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~G 191 (351)
.+|+++.|-.....++.+.+...+.. .++...|+++|+|+|||||||||||++|+++|++++.+++.+.++++.+++.|
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~g 221 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLG 221 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcc
Confidence 34566555433444444444433332 34455688999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceE
Q 018745 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (351)
Q Consensus 192 e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~I 271 (351)
++++.++++|..| +...||||||||+|+++.++.+.. ......+...+++++. .+++.....++.|
T Consensus 222 e~~~~lr~lf~~A----~~~~P~ILfIDEID~i~~~r~~~~--~~~d~~~~r~l~~LL~--------~ld~~~~~~~v~V 287 (398)
T PTZ00454 222 EGPRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQ--TGADREVQRILLELLN--------QMDGFDQTTNVKV 287 (398)
T ss_pred hhHHHHHHHHHHH----HhcCCeEEEEECHhhhcccccccc--CCccHHHHHHHHHHHH--------HhhccCCCCCEEE
Confidence 9999999999998 888999999999999988764211 1122333445555555 2322245567899
Q ss_pred EEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcccc
Q 018745 272 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 272 I~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dldf~ 336 (351)
|+|||+++.|||+++|+||||+.|++ |+.++|.+|++.++... +++.+.+++.++||+|+||...
T Consensus 288 I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 288 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999999999999996 99999999999887653 5668899999999999998643
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=1.5e-30 Score=259.26 Aligned_cols=211 Identities=20% Similarity=0.285 Sum_probs=165.1
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCC
Q 018745 112 TYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (351)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~ 190 (351)
.++|+++.+-....+++.+.+...+.+ ..+...|+.+|+++|||||||||||++|+++|++++.+++.++++++.+.|.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~ 206 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFI 206 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhc
Confidence 344555555333333333333333322 2334568899999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCce
Q 018745 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (351)
Q Consensus 191 Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~ 270 (351)
|++++.++.+|..| +...||||||||+|+++..+.+.. ......+..++++++. .+++.....++.
T Consensus 207 g~~~~~i~~~f~~a----~~~~p~IlfiDEiD~l~~~r~~~~--~~~~~~~~~~l~~lL~--------~ld~~~~~~~v~ 272 (389)
T PRK03992 207 GEGARLVRELFELA----REKAPSIIFIDEIDAIAAKRTDSG--TSGDREVQRTLMQLLA--------EMDGFDPRGNVK 272 (389)
T ss_pred cchHHHHHHHHHHH----HhcCCeEEEEechhhhhcccccCC--CCccHHHHHHHHHHHH--------hccccCCCCCEE
Confidence 99999999999998 788999999999999988775221 1122334555666665 333335566899
Q ss_pred EEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcccc
Q 018745 271 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 271 II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dldf~ 336 (351)
||+|||+++.+|++++||||||+.+++ |+.++|.+|++.+++.. +++.+.++..++||+|+||...
T Consensus 273 VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 273 IIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAI 344 (389)
T ss_pred EEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHH
Confidence 999999999999999999999999996 99999999999887653 4678999999999999998744
No 24
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=2.5e-30 Score=276.03 Aligned_cols=177 Identities=25% Similarity=0.399 Sum_probs=152.2
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 143 ~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
..+.++|+|+|||||||||||++|+++|++++.+++.++++++.++|+|++++.++++|..| +...||||||||+|
T Consensus 481 ~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A----~~~~p~iifiDEid 556 (733)
T TIGR01243 481 KMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAPAIIFFDEID 556 (733)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHH----HhcCCEEEEEEChh
Confidence 45788999999999999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred cccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCH
Q 018745 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 300 (351)
Q Consensus 223 ~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~ 300 (351)
+++..++.........+.+ ..|+..+| ++ ....+++||+|||+++.||+|++||||||+.+++ |+.
T Consensus 557 ~l~~~r~~~~~~~~~~~~~-~~lL~~ld--------g~---~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 557 AIAPARGARFDTSVTDRIV-NQLLTEMD--------GI---QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred hhhccCCCCCCccHHHHHH-HHHHHHhh--------cc---cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 9998876332233333333 34444444 33 4567899999999999999999999999999996 999
Q ss_pred HHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCccc
Q 018745 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 301 e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dldf 335 (351)
++|.+|++.+.+.. .++.+.+++.++||+|+||.-
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 663 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEA 663 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHH
Confidence 99999998877653 566889999999999999864
No 25
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-30 Score=251.18 Aligned_cols=212 Identities=20% Similarity=0.323 Sum_probs=173.4
Q ss_pred ccccccccccccccCCCCCchhHHHHHHHHHHHHhh--hCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccC
Q 018745 106 ISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFM--SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (351)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l--~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s 183 (351)
..+..-..+|+++.+-..+..++.+.++.+....-+ .-.-.++|+|||||||||||||++|+++|++.|.+|+.++.+
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 334444456788777767777777777666543322 223457899999999999999999999999999999999999
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc
Q 018745 184 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 263 (351)
Q Consensus 184 ~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~ 263 (351)
.+.++|+|+.+++++.+|..| .+-+||||||||+|++.+.|. .++. ....+..+.||.+-| ++..
T Consensus 162 ~lt~KWfgE~eKlv~AvFslA----sKl~P~iIFIDEvds~L~~R~-s~dH-Ea~a~mK~eFM~~WD--------Gl~s- 226 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLA----SKLQPSIIFIDEVDSFLGQRR-STDH-EATAMMKNEFMALWD--------GLSS- 226 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhh----hhcCcceeehhhHHHHHhhcc-cchH-HHHHHHHHHHHHHhc--------cccC-
Confidence 999999999999999999999 789999999999999998883 4443 444455667777777 5521
Q ss_pred CCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcc
Q 018745 264 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 264 ~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dld 334 (351)
....+|+|+++||+|.+||.|++| ||.+.+.+ |+.++|.+|++.+++.+ ++++..++.+++||+|.||-
T Consensus 227 ~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLk 301 (386)
T KOG0737|consen 227 KDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLK 301 (386)
T ss_pred CCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHH
Confidence 234469999999999999999999 78877775 99999999999999875 56689999999999999986
No 26
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=9.1e-30 Score=235.94 Aligned_cols=183 Identities=20% Similarity=0.266 Sum_probs=150.0
Q ss_pred HHHHHHhhhCC---CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHh
Q 018745 134 VHITKNFMSLP---NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 210 (351)
Q Consensus 134 ~~i~k~~l~~~---~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~ 210 (351)
..++-.|+..| +-=-|+.+|+|||||||||++|+++|+++..+++.+++.+|...++|+.++.|+++|.+| ++
T Consensus 133 crli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA----~~ 208 (368)
T COG1223 133 CRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERA----RK 208 (368)
T ss_pred HHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHH----Hh
Confidence 34455566433 333589999999999999999999999999999999999999999999999999999999 89
Q ss_pred CCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCc
Q 018745 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 290 (351)
Q Consensus 211 ~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gR 290 (351)
.+|||+||||+|+++-+|....-...-...++ +|+. .+++..++.+|..|++||+++.||||++ .|
T Consensus 209 ~aPcivFiDE~DAiaLdRryQelRGDVsEiVN-ALLT-----------elDgi~eneGVvtIaaTN~p~~LD~aiR--sR 274 (368)
T COG1223 209 AAPCIVFIDELDAIALDRRYQELRGDVSEIVN-ALLT-----------ELDGIKENEGVVTIAATNRPELLDPAIR--SR 274 (368)
T ss_pred cCCeEEEehhhhhhhhhhhHHHhcccHHHHHH-HHHH-----------hccCcccCCceEEEeecCChhhcCHHHH--hh
Confidence 99999999999999877652111111222232 3333 4455588999999999999999999997 48
Q ss_pred ceEEEe--CCCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcc
Q 018745 291 MEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 291 fd~~i~--~P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dld 334 (351)
|+..|+ +|+.++|.+|++...++- ..+++.+++.+.||+|.||.
T Consensus 275 FEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdik 324 (368)
T COG1223 275 FEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIK 324 (368)
T ss_pred hhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHH
Confidence 998888 599999999999888764 44488999999999999985
No 27
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=1.3e-29 Score=280.48 Aligned_cols=173 Identities=9% Similarity=0.055 Sum_probs=137.1
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCC----------CC----------------------
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN----------AG---------------------- 191 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~----------~G---------------------- 191 (351)
.|.++|+||||+||||||||+||+|+|.+++++++.++++++.+++ .|
T Consensus 1625 LGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1625 LALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred cCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence 4788999999999999999999999999999999999999988654 11
Q ss_pred ---------ChHH--HHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCC
Q 018745 192 ---------EPAK--LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM 260 (351)
Q Consensus 192 ---------e~~~--~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~ 260 (351)
+.+. .++.+|+.| ++.+||||||||||+++.+.. .....+.|++.++ +.
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelA----Rk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLD--------g~ 1764 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELA----KAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLS--------RD 1764 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHH----HHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhc--------cc
Confidence 1222 378889999 899999999999999987532 1112344555555 43
Q ss_pred cccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhh-------cCCCCCHHHHHHHhcCCCCC
Q 018745 261 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF-------RNDNVADDDIVKLVDTFPGQ 331 (351)
Q Consensus 261 ~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~-------~~~~~~~~~l~~l~~gf~g~ 331 (351)
.......+|+||+|||+|+.|||||+||||||+.|++ |+..+|.+++..+. ....++.+.+++.|.||+|+
T Consensus 1765 ~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGA 1844 (2281)
T CHL00206 1765 CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNAR 1844 (2281)
T ss_pred cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHH
Confidence 2223456899999999999999999999999999996 88888888876432 22235688999999999999
Q ss_pred Ccccc
Q 018745 332 SIGKF 336 (351)
Q Consensus 332 dldf~ 336 (351)
||.-.
T Consensus 1845 DLanL 1849 (2281)
T CHL00206 1845 DLVAL 1849 (2281)
T ss_pred HHHHH
Confidence 98743
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=1.5e-29 Score=259.10 Aligned_cols=207 Identities=22% Similarity=0.290 Sum_probs=160.6
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHH--hhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccC
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 188 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~--~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~ 188 (351)
...+|+++.+...+..++.+- +.. .++ .+...+.+.|+|+|||||||||||++|+++|++++.+++.++++++.+.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~-~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEI-VDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 345677777654444444432 211 221 1233478899999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcc--chhhhHHHHHHHHHhhcCCccccCCCCcccCCC
Q 018745 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 266 (351)
Q Consensus 189 ~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~--~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~ 266 (351)
+.|..++.++++|..| +...||||||||||++..++..... .....+.++ .|+..+| ++ ...
T Consensus 128 ~~g~~~~~l~~~f~~a----~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~-~lL~~~d--------~~---~~~ 191 (495)
T TIGR01241 128 FVGVGASRVRDLFEQA----KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLN-QLLVEMD--------GF---GTN 191 (495)
T ss_pred HhcccHHHHHHHHHHH----HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHH-HHHhhhc--------cc---cCC
Confidence 9999999999999999 7889999999999999887652111 111122222 3333333 33 456
Q ss_pred CCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCccc
Q 018745 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 267 ~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dldf 335 (351)
.++.||+|||+++.||++++||||||+.+++ |+.++|.+|++.++... .++.+.++..+.||+|+||.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHH
Confidence 6799999999999999999999999999996 99999999999988654 455789999999999999874
No 29
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=5.6e-29 Score=253.81 Aligned_cols=211 Identities=17% Similarity=0.202 Sum_probs=155.1
Q ss_pred cccccccCCCCCchhHHHHHHHHHH-HHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc----------cEEec
Q 018745 113 YNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------PIMMS 181 (351)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~----------~i~vs 181 (351)
.+|+++.|-....+++.+.+..... +.++...++++|+|+|||||||||||++|+++|++++.+ ++.++
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 3455655433333344444333222 223345588999999999999999999999999998654 55677
Q ss_pred cCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCc
Q 018745 182 AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY 261 (351)
Q Consensus 182 ~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~ 261 (351)
.+++.++|.|++++.++.+|..|.+....+.||||||||+|+++.+|+.......... +...|++.+| ++
T Consensus 259 ~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~-il~~LL~~LD--------gl- 328 (512)
T TIGR03689 259 GPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETT-VVPQLLSELD--------GV- 328 (512)
T ss_pred chhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHH-HHHHHHHHhc--------cc-
Confidence 7888999999999999999999865555678999999999999988753222222233 3345566555 44
Q ss_pred ccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCCCHHHHHHHhcCCCCCCcccc
Q 018745 262 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 262 ~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~~~~~l~~l~~gf~g~dldf~ 336 (351)
....+++||+|||+++.||||++||||||..|++ |+.++|.+|++.++...-...+++ ....|++++++...
T Consensus 329 --~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l-~~~~g~~~a~~~al 402 (512)
T TIGR03689 329 --ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADL-AEFDGDREATAAAL 402 (512)
T ss_pred --ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHH-HHhcCCCHHHHHHH
Confidence 4456899999999999999999999999999986 999999999999886532223333 34678888876533
No 30
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=3.9e-29 Score=251.48 Aligned_cols=180 Identities=19% Similarity=0.291 Sum_probs=150.4
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 143 ~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
..++.+|.|+|||||||||||++|+++|++++.+++.+..+++.+.+.|+.++.++.+|..| ....||||||||||
T Consensus 211 ~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A----~~~~P~ILfIDEID 286 (438)
T PTZ00361 211 DIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EENAPSIVFIDEID 286 (438)
T ss_pred hcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHH----HhCCCcEEeHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999998 78899999999999
Q ss_pred cccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCH
Q 018745 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 300 (351)
Q Consensus 223 ~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~ 300 (351)
+++.++... .....+.+..++++++. .+++.....++.||+|||+++.||++++|+||||+.|++ |+.
T Consensus 287 ~l~~kR~~~--~sgg~~e~qr~ll~LL~--------~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 287 AIGTKRYDA--TSGGEKEIQRTMLELLN--------QLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred HHhccCCCC--CCcccHHHHHHHHHHHH--------HHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH
Confidence 998876421 11122233444555554 222224456789999999999999999999999999996 999
Q ss_pred HHHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCcccc
Q 018745 301 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 301 e~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf~ 336 (351)
++|.+|++.++.. .+++.+.++..+++|+|+||...
T Consensus 357 ~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i 396 (438)
T PTZ00361 357 KTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAI 396 (438)
T ss_pred HHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHH
Confidence 9999999988754 36678899999999999998744
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=2.9e-28 Score=240.55 Aligned_cols=211 Identities=20% Similarity=0.268 Sum_probs=161.5
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCC
Q 018745 112 TYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (351)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~ 190 (351)
.++|+++.+-....+++.+.+...+.+ .++...++.+|+|+|||||||||||++|+++|++++.+++.+..+++...+.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~ 197 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYI 197 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhh
Confidence 344555555333333333333332222 2233468889999999999999999999999999999999999999988999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCce
Q 018745 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (351)
Q Consensus 191 Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~ 270 (351)
|+....++.+|..+ +...|+||||||+|.+...+.+.. ......++.++++++. .+++.....++.
T Consensus 198 g~~~~~i~~~f~~a----~~~~p~il~iDEiD~l~~~~~~~~--~~~~~~~~~~l~~ll~--------~ld~~~~~~~v~ 263 (364)
T TIGR01242 198 GEGARLVREIFELA----KEKAPSIIFIDEIDAIAAKRTDSG--TSGDREVQRTLMQLLA--------ELDGFDPRGNVK 263 (364)
T ss_pred hHHHHHHHHHHHHH----HhcCCcEEEhhhhhhhccccccCC--CCccHHHHHHHHHHHH--------HhhCCCCCCCEE
Confidence 99999999999988 778999999999999987764211 1122334445555555 232224456899
Q ss_pred EEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcccc
Q 018745 271 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 271 II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dldf~ 336 (351)
||+|||+++.+|++++|+||||+.+++ |+.++|.+|++.+.... +++.+.++..++||+|+||...
T Consensus 264 vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l 335 (364)
T TIGR01242 264 VIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAI 335 (364)
T ss_pred EEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHH
Confidence 999999999999999999999999986 99999999998887553 4678999999999999998743
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=99.95 E-value=3.3e-28 Score=254.74 Aligned_cols=177 Identities=24% Similarity=0.336 Sum_probs=145.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
.+.+.|+|+|||||||||||++|+++|.+++.+++.++++++.+.+.|.....++.+|..| +...||||||||||+
T Consensus 211 ~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A----~~~~P~ILfIDEID~ 286 (638)
T CHL00176 211 VGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKA----KENSPCIVFIDEIDA 286 (638)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHH----hcCCCcEEEEecchh
Confidence 4778899999999999999999999999999999999999998888888888899999999 888999999999999
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHH
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 301 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e 301 (351)
+...++..... .+.....+|..++. .+++.....++.||+|||+++.+|++++||||||+.+.+ |+.+
T Consensus 287 l~~~r~~~~~~--~~~e~~~~L~~LL~--------~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~ 356 (638)
T CHL00176 287 VGRQRGAGIGG--GNDEREQTLNQLLT--------EMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDRE 356 (638)
T ss_pred hhhcccCCCCC--CcHHHHHHHHHHHh--------hhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHH
Confidence 98776421111 11222334444444 333335567899999999999999999999999999986 9999
Q ss_pred HHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcc
Q 018745 302 DRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 302 ~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dld 334 (351)
+|.+|++.+++.. .++...++..+.||+|+||.
T Consensus 357 ~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~ 393 (638)
T CHL00176 357 GRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLA 393 (638)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHH
Confidence 9999999998764 33467788889999999986
No 33
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.4e-28 Score=239.73 Aligned_cols=205 Identities=18% Similarity=0.241 Sum_probs=165.9
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCCh
Q 018745 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (351)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~ 193 (351)
.|+.+.+.......+.+.++....+..+...--.+++|+||.||||+|||+|++|||.+.+..|+.++++.|.++|.|+.
T Consensus 151 ~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~ 230 (428)
T KOG0740|consen 151 GWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGES 230 (428)
T ss_pred cccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChH
Confidence 34555554444555555555555555554434456699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEE
Q 018745 194 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273 (351)
Q Consensus 194 ~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~ 273 (351)
++++|.+|..| +..+|+|+||||+|+++..|. ........++..+.|+++.- . ......+|+||+
T Consensus 231 eK~vralf~vA----r~~qPsvifidEidslls~Rs-~~e~e~srr~ktefLiq~~~--------~--~s~~~drvlvig 295 (428)
T KOG0740|consen 231 EKLVRALFKVA----RSLQPSVIFIDEIDSLLSKRS-DNEHESSRRLKTEFLLQFDG--------K--NSAPDDRVLVIG 295 (428)
T ss_pred HHHHHHHHHHH----HhcCCeEEEechhHHHHhhcC-CcccccchhhhhHHHhhhcc--------c--cCCCCCeEEEEe
Confidence 99999999999 999999999999999999985 44455555666666665433 1 123456999999
Q ss_pred EeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCC-----CCHHHHHHHhcCCCCCCccc
Q 018745 274 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN-----VADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 274 TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~-----~~~~~l~~l~~gf~g~dldf 335 (351)
|||+|+.+|.|++| ||.+++++ |+.+.|..++..+++..+ .+.+.++++++||+|.||+-
T Consensus 296 aTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~ 362 (428)
T KOG0740|consen 296 ATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITA 362 (428)
T ss_pred cCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHH
Confidence 99999999999999 99999996 999999999999887652 23778999999999999863
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-27 Score=252.92 Aligned_cols=214 Identities=18% Similarity=0.238 Sum_probs=175.1
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHH-hhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCcc
Q 018745 112 TYNLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (351)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~-~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~l 185 (351)
..+|+.+.|-..+...+.+-+...+... ++...++.+|+|+|+|||||||||+.|+++|..+ .+.|++-++.+.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 3356776665555555555444433322 2234589999999999999999999999999988 467888999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCC
Q 018745 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (351)
Q Consensus 186 ~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~ 265 (351)
.++|+|+.++.++.+|++| ++..|+|+|+||||.+++.|+ ..|......++ .||+.++| ++ ..
T Consensus 341 lskwvgEaERqlrllFeeA----~k~qPSIIffdeIdGlapvrS-skqEqih~SIv-STLLaLmd--------Gl---ds 403 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEA----QKTQPSIIFFDEIDGLAPVRS-SKQEQIHASIV-STLLALMD--------GL---DS 403 (1080)
T ss_pred hccccCcHHHHHHHHHHHH----hccCceEEecccccccccccc-chHHHhhhhHH-HHHHHhcc--------CC---CC
Confidence 9999999999999999999 999999999999999999886 34555555555 58888888 77 77
Q ss_pred CCCceEEEEeCCCCCCcchhccCCcceEEEe--CCCHHHHHHHHHHhhcCCC--CC---HHHHHHHhcCCCCCCccccch
Q 018745 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VA---DDDIVKLVDTFPGQSIGKFPV 338 (351)
Q Consensus 266 ~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~--~P~~e~R~~Il~~~~~~~~--~~---~~~l~~l~~gf~g~dldf~ga 338 (351)
+..|.||++||+++.+||||+||||||+.+| +|+.++|.+|+..+.++-. +. ...+++.+.||.|+||.+..+
T Consensus 404 RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 404 RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred CCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHH
Confidence 8999999999999999999999999999999 4999999999988877643 22 678999999999999998855
Q ss_pred hhcc
Q 018745 339 PLMM 342 (351)
Q Consensus 339 lr~~ 342 (351)
..++
T Consensus 484 eAal 487 (1080)
T KOG0732|consen 484 EAAL 487 (1080)
T ss_pred HHhh
Confidence 5443
No 35
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2e-27 Score=242.49 Aligned_cols=173 Identities=25% Similarity=0.359 Sum_probs=155.6
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCC-ceEEEeccc
Q 018745 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDL 221 (351)
Q Consensus 143 ~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~-p~IL~IDEI 221 (351)
..++++|+|+|+|||||||||+++++||++.++.++.++++++.+++.|++++++|..|++| .+.+ |++||||||
T Consensus 212 s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a----~k~~~psii~IdEl 287 (693)
T KOG0730|consen 212 SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEA----LKFQVPSIIFIDEL 287 (693)
T ss_pred hcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHH----hccCCCeeEeHHhH
Confidence 45899999999999999999999999999999999999999999999999999999999999 8777 999999999
Q ss_pred ccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CC
Q 018745 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 299 (351)
Q Consensus 222 D~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~ 299 (351)
|++++++.+.. . ..+.+...|+.++| ++ ....+++||++||+|+.||++++| ||||+.+++ |+
T Consensus 288 d~l~p~r~~~~-~--~e~Rv~sqlltL~d--------g~---~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~ 352 (693)
T KOG0730|consen 288 DALCPKREGAD-D--VESRVVSQLLTLLD--------GL---KPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPG 352 (693)
T ss_pred hhhCCcccccc-h--HHHHHHHHHHHHHh--------hC---cCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCC
Confidence 99999986322 2 45566678888888 66 566889999999999999999999 999999996 99
Q ss_pred HHHHHHHHHHhhcCCC----CCHHHHHHHhcCCCCCCcc
Q 018745 300 REDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 300 ~e~R~~Il~~~~~~~~----~~~~~l~~l~~gf~g~dld 334 (351)
..+|.+|++.+++.-+ .++.+++..+.||+|+||.
T Consensus 353 ~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~ 391 (693)
T KOG0730|consen 353 SDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLA 391 (693)
T ss_pred chhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHH
Confidence 9999999999987643 4578999999999999986
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=8.2e-27 Score=245.54 Aligned_cols=177 Identities=21% Similarity=0.316 Sum_probs=147.1
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
.+.+.|+|+||+||||||||++|+++|++++.+++.++++++.+.+.|.....++++|..| +...||||||||+|+
T Consensus 180 ~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a----~~~~P~IifIDEiD~ 255 (644)
T PRK10733 180 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEIDA 255 (644)
T ss_pred cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH----HhcCCcEEEehhHhh
Confidence 4667889999999999999999999999999999999999999999999999999999998 788999999999999
Q ss_pred ccCCCCCCc--cchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CC
Q 018745 224 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 299 (351)
Q Consensus 224 l~~~r~~~~--~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~ 299 (351)
+..+++... ......+.++ .|+..+| ++ ....++++|+|||+++.||++++||||||+.+++ |+
T Consensus 256 l~~~r~~~~~g~~~~~~~~ln-~lL~~md--------g~---~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 256 VGRQRGAGLGGGHDEREQTLN-QMLVEMD--------GF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred hhhccCCCCCCCchHHHHHHH-HHHHhhh--------cc---cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 988775211 1111222332 2222233 33 5567899999999999999999999999999996 99
Q ss_pred HHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCcccc
Q 018745 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 300 ~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dldf~ 336 (351)
.++|.+|++.+++.. .++...+++.+.||+|+||.-.
T Consensus 324 ~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l 364 (644)
T PRK10733 324 VRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 364 (644)
T ss_pred HHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHH
Confidence 999999999998753 5667889999999999998743
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=5.8e-25 Score=234.92 Aligned_cols=207 Identities=21% Similarity=0.278 Sum_probs=161.2
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHH-HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCC
Q 018745 112 TYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (351)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~ 190 (351)
.++|+++.+-......+.+.+...+.. ..+...++++|+++|||||||||||++|+++|++++.+++.++++++.+++.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~ 253 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYY 253 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccc
Confidence 455666655433333333322222211 2223458899999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCce
Q 018745 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (351)
Q Consensus 191 Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~ 270 (351)
|+.++.++.+|..| ....|+||||||||.++..+.. .... ....+...|+++++ ++ ....++.
T Consensus 254 g~~~~~l~~lf~~a----~~~~p~il~iDEid~l~~~r~~-~~~~-~~~~~~~~Ll~~ld--------~l---~~~~~vi 316 (733)
T TIGR01243 254 GESEERLREIFKEA----EENAPSIIFIDEIDAIAPKREE-VTGE-VEKRVVAQLLTLMD--------GL---KGRGRVI 316 (733)
T ss_pred cHHHHHHHHHHHHH----HhcCCcEEEeehhhhhcccccC-Ccch-HHHHHHHHHHHHhh--------cc---ccCCCEE
Confidence 99999999999998 7889999999999999987652 1122 22334556777776 43 3456788
Q ss_pred EEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCC----CCCHHHHHHHhcCCCCCCccc
Q 018745 271 IIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 271 II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~----~~~~~~l~~l~~gf~g~dldf 335 (351)
||+|||+++.||++++|+|||+..+++ |+.++|.+|++.+.+.. ..+.+.+++.++||+|+++..
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~ 387 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAA 387 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999885 99999999999877653 456889999999999998754
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.90 E-value=2.7e-23 Score=173.47 Aligned_cols=130 Identities=27% Similarity=0.407 Sum_probs=111.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCC-ceEEEecccccccCCCCC
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDLDAGAGRMGG 230 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~-p~IL~IDEID~l~~~r~~ 230 (351)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.++..+.++..|..+ +... |+||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~vl~iDe~d~l~~~~-- 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKA----KKSAKPCVLFIDEIDKLFPKS-- 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHH----HHTSTSEEEEEETGGGTSHHC--
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccc----cccccceeeeeccchhccccc--
Confidence 79999999999999999999999999999999999999999999999999998 6665 9999999999998776
Q ss_pred CccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeCC
Q 018745 231 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 298 (351)
Q Consensus 231 ~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~P 298 (351)
........+.+...|++.+++.. ....++++|+|||+++.++++++| +||+..+++|
T Consensus 75 ~~~~~~~~~~~~~~L~~~l~~~~----------~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 75 QPSSSSFEQRLLNQLLSLLDNPS----------SKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp STSSSHHHHHHHHHHHHHHHTTT----------TTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ccccccccccccceeeecccccc----------cccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 23355566666778888888221 124679999999999999999999 9999999876
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.2e-22 Score=200.92 Aligned_cols=193 Identities=18% Similarity=0.200 Sum_probs=138.7
Q ss_pred cccccCCCCCchhHHHHHHHHH-HHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCCh
Q 018745 115 LDNTIDGLYIAPAFMDKLVVHI-TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (351)
Q Consensus 115 ~~~~~~~~~i~~~~~d~~~~~i-~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~ 193 (351)
|+.+.-+..+.+++++.+.--+ -|.|++.-|.+.-+|-|||||||||||+++.|+|+++++.++.+..++... .
T Consensus 200 F~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~-----n 274 (457)
T KOG0743|consen 200 FETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL-----D 274 (457)
T ss_pred ccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----c
Confidence 4444444444444444433322 356667778889999999999999999999999999999999988876533 2
Q ss_pred HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccc----h-hhhHHHHHHHHHhhcCCccccCCCCcccCCCCC
Q 018745 194 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQY----T-VNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (351)
Q Consensus 194 ~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~----~-~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~ 268 (351)
.. ++.+...+ ...+||+|+|||+-+..++..... . ..+......|+|.+| ++|......|
T Consensus 275 ~d-Lr~LL~~t------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiD--------GlwSscg~ER 339 (457)
T KOG0743|consen 275 SD-LRHLLLAT------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLD--------GLWSSCGDER 339 (457)
T ss_pred HH-HHHHHHhC------CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhc--------cccccCCCce
Confidence 22 66555544 677999999999986544311111 1 123455667888888 8877665444
Q ss_pred ceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCC--CCHHHHHHHhcCC
Q 018745 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTF 328 (351)
Q Consensus 269 v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~--~~~~~l~~l~~gf 328 (351)
+||+|||+++.|||||+||||||..|++ -+.++-..+.+.++..+. .-+++++++.++-
T Consensus 340 -IivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~ 402 (457)
T KOG0743|consen 340 -IIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEET 402 (457)
T ss_pred -EEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcC
Confidence 6899999999999999999999999998 788888888888886643 2255666655544
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.4e-20 Score=173.73 Aligned_cols=152 Identities=20% Similarity=0.353 Sum_probs=123.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCC---------ccEEeccCccccCCCCChHHHHHHHHHHHHHHHH-hCCceE
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCC 215 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~---------~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~I 215 (351)
+...+.||||||||||||+||+++|+++.+ ..+.++...+.++|++|+.+++..+|+...+++. .+...+
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 456789999999999999999999999843 4678999999999999999999999999988887 677788
Q ss_pred EEecccccccCCCC---CCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcce
Q 018745 216 LMINDLDAGAGRMG---GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292 (351)
Q Consensus 216 L~IDEID~l~~~r~---~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd 292 (351)
++|||+++++..|. ...+.+..-+.++ +|+--+| . ....++++|.+|+|-.+.||.|+.- |-|
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVN-alLTQlD--------r---lK~~~NvliL~TSNl~~siD~AfVD--RAD 319 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVN-ALLTQLD--------R---LKRYPNVLILATSNLTDSIDVAFVD--RAD 319 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHH-HHHHHHH--------H---hccCCCEEEEeccchHHHHHHHhhh--Hhh
Confidence 89999999976662 1233344444444 3333233 3 3778999999999999999999985 788
Q ss_pred EEEeC--CCHHHHHHHHHHhh
Q 018745 293 KFYWA--PTREDRIGVCKGIF 311 (351)
Q Consensus 293 ~~i~~--P~~e~R~~Il~~~~ 311 (351)
...++ |+.+.+.+|++...
T Consensus 320 i~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 320 IVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred heeecCCccHHHHHHHHHHHH
Confidence 88887 99999999976654
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.5e-17 Score=159.44 Aligned_cols=192 Identities=17% Similarity=0.246 Sum_probs=132.6
Q ss_pred CCCCchhHHHHHHHHHHHHhhhCC-CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHH
Q 018745 121 GLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 199 (351)
Q Consensus 121 ~~~i~~~~~d~~~~~i~k~~l~~~-~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~ 199 (351)
+....|.+. +.+-+++..-.+.. +-.+-+.||+|||||||||+.|+-+|...|..+-++.++++. .+..+....|++
T Consensus 356 ~ViL~psLe-~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTkiH~ 433 (630)
T KOG0742|consen 356 GVILHPSLE-KRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKIHK 433 (630)
T ss_pred CeecCHHHH-HHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHHHH
Confidence 334455544 33445544433322 233448999999999999999999999999999999988763 233345567999
Q ss_pred HHHHHHHHHHhC-CceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC
Q 018745 200 RYREAADIIKKG-KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (351)
Q Consensus 200 ~f~~A~~~~~~~-~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~ 278 (351)
+|+.| ++. +--+|||||.|++.+.|..+.-......-+++.|..-- +....+.++++||+|
T Consensus 434 lFDWa----kkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--------------dqSrdivLvlAtNrp 495 (630)
T KOG0742|consen 434 LFDWA----KKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------------DQSRDIVLVLATNRP 495 (630)
T ss_pred HHHHH----hhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--------------ccccceEEEeccCCc
Confidence 99999 644 45578999999999888521111112222222222111 234567889999999
Q ss_pred CCCcchhccCCcceEEEe--CCCHHHHHHHHHHhhcC-------C--------------------CCC----HHHHHHHh
Q 018745 279 STLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN-------D--------------------NVA----DDDIVKLV 325 (351)
Q Consensus 279 ~~Ld~aLlR~gRfd~~i~--~P~~e~R~~Il~~~~~~-------~--------------------~~~----~~~l~~l~ 325 (351)
..+|.|+- .|+|..++ +|..++|..++..++.+ . +.+ +.++++.+
T Consensus 496 gdlDsAV~--DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkT 573 (630)
T KOG0742|consen 496 GDLDSAVN--DRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKT 573 (630)
T ss_pred cchhHHHH--hhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhc
Confidence 99999997 59999888 59999999997665532 0 111 45688899
Q ss_pred cCCCCCCcc
Q 018745 326 DTFPGQSIG 334 (351)
Q Consensus 326 ~gf~g~dld 334 (351)
+||+|..|.
T Consensus 574 eGfSGREia 582 (630)
T KOG0742|consen 574 EGFSGREIA 582 (630)
T ss_pred cCCcHHHHH
Confidence 999998874
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.71 E-value=1.4e-16 Score=150.54 Aligned_cols=149 Identities=17% Similarity=0.135 Sum_probs=104.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---C----CccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g----~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEI 221 (351)
+..++|+||||||||++|+++|+.+ + .+++.++++++.+.+.|+.+..++++|..| ..+||||||+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~VL~IDE~ 114 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKA-------LGGVLFIDEA 114 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhc-------cCCEEEEech
Confidence 4679999999999999999999875 2 367788888898999999888888888776 3579999999
Q ss_pred ccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC-----CCCcchhccCCcceEEEe
Q 018745 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGRMEKFYW 296 (351)
Q Consensus 222 D~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~-----~~Ld~aLlR~gRfd~~i~ 296 (351)
|.+..... .. .++....+|+..++ .....+.+|++++.. ..++|++.+ ||...+.
T Consensus 115 ~~L~~~~~----~~-~~~~~i~~Ll~~~e-------------~~~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~ 174 (261)
T TIGR02881 115 YSLARGGE----KD-FGKEAIDTLVKGME-------------DNRNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISID 174 (261)
T ss_pred hhhccCCc----cc-hHHHHHHHHHHHHh-------------ccCCCEEEEecCCcchhHHHHhcChHHHh--ccceEEE
Confidence 99863211 11 12333445666555 123445555555432 246788886 7777666
Q ss_pred C--CCHHHHHHHHHHhhcCCC--CCHHHHHHH
Q 018745 297 A--PTREDRIGVCKGIFRNDN--VADDDIVKL 324 (351)
Q Consensus 297 ~--P~~e~R~~Il~~~~~~~~--~~~~~l~~l 324 (351)
+ ++.+++.+|++.++...+ ++.+.+..+
T Consensus 175 f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l 206 (261)
T TIGR02881 175 FPDYTVEELMEIAERMVKEREYKLTEEAKWKL 206 (261)
T ss_pred ECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence 5 688999999998887553 444444333
No 43
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.68 E-value=3.5e-16 Score=149.98 Aligned_cols=150 Identities=11% Similarity=0.087 Sum_probs=109.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC-------CccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg-------~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEI 221 (351)
..+++|+||||||||++|+++|+.+. -+++.++..++.+.+.|.++..++++|..| .+++|||||+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a-------~~gvL~iDEi 130 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRA-------MGGVLFIDEA 130 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHc-------cCcEEEEech
Confidence 45899999999999999999998762 268888888888888898877777777776 4589999999
Q ss_pred ccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC--C---CCcchhccCCcceEEEe
Q 018745 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF--S---TLYAPLIRDGRMEKFYW 296 (351)
Q Consensus 222 D~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~--~---~Ld~aLlR~gRfd~~i~ 296 (351)
|.+...+. .......+...|+++++ ....++.||++++.. + .++|+|.+ ||+..+.
T Consensus 131 ~~L~~~~~----~~~~~~~~~~~Ll~~le-------------~~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~ 191 (284)
T TIGR02880 131 YYLYRPDN----ERDYGQEAIEILLQVME-------------NQRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVD 191 (284)
T ss_pred hhhccCCC----ccchHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEE
Confidence 98865432 11233455567777776 223566777776532 2 34788887 7877777
Q ss_pred C--CCHHHHHHHHHHhhcCC--CCCHHHHHHH
Q 018745 297 A--PTREDRIGVCKGIFRND--NVADDDIVKL 324 (351)
Q Consensus 297 ~--P~~e~R~~Il~~~~~~~--~~~~~~l~~l 324 (351)
+ ++.+++.+|++.++... .++.+.+..+
T Consensus 192 fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L 223 (284)
T TIGR02880 192 FPDYSEAELLVIAGLMLKEQQYRFSAEAEEAF 223 (284)
T ss_pred eCCcCHHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 5 88999999999888764 3444444333
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=99.67 E-value=5.4e-16 Score=148.89 Aligned_cols=149 Identities=13% Similarity=0.129 Sum_probs=107.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CC----ccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~----~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEI 221 (351)
+..+||+||||||||++|+++|+.+ |. +++.++.+++.+.+.|+++..++.+|..| ..+||||||+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a-------~ggVLfIDE~ 131 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA-------MGGVLFIDEA 131 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHc-------cCCEEEEEcc
Confidence 3469999999999999999999875 22 57888888888888888877777777666 4579999999
Q ss_pred ccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----CCcchhccCCcceEEEe
Q 018745 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYW 296 (351)
Q Consensus 222 D~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----~Ld~aLlR~gRfd~~i~ 296 (351)
|.+...++. .........+|+.+++ ....++.||++++... .++|+|.| ||+..++
T Consensus 132 ~~l~~~~~~----~~~~~e~~~~L~~~me-------------~~~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~ 192 (287)
T CHL00181 132 YYLYKPDNE----RDYGSEAIEILLQVME-------------NQRDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVD 192 (287)
T ss_pred chhccCCCc----cchHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEE
Confidence 998654321 1123455567777776 1234567777775322 33588887 7887777
Q ss_pred C--CCHHHHHHHHHHhhcCC--CCCHHHHHH
Q 018745 297 A--PTREDRIGVCKGIFRND--NVADDDIVK 323 (351)
Q Consensus 297 ~--P~~e~R~~Il~~~~~~~--~~~~~~l~~ 323 (351)
. ++.+++.+|++.++... .++.+....
T Consensus 193 F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~ 223 (287)
T CHL00181 193 FPDYTPEELLQIAKIMLEEQQYQLTPEAEKA 223 (287)
T ss_pred cCCcCHHHHHHHHHHHHHHhcCCCChhHHHH
Confidence 6 89999999999998754 344444433
No 45
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=9.3e-16 Score=165.17 Aligned_cols=164 Identities=20% Similarity=0.303 Sum_probs=116.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc---------cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 220 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~---------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDE 220 (351)
..+||+||||||||++|+++|+.++.+++.++.+.+. ..|.|.....+.+.|..+ ...+| ||||||
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~----~~~~~-villDE 422 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA----KTKNP-LFLLDE 422 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh----CcCCC-EEEEec
Confidence 4799999999999999999999999999988766442 246666666666777766 44444 899999
Q ss_pred cccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCC-CCcc-cCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC-
Q 018745 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYN-KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 297 (351)
Q Consensus 221 ID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~-~~~~-~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~- 297 (351)
||++.....++ ...+|++++|+..+..+. ...+ ..+..++++|+|||..+.|+++|++ ||+. +.+
T Consensus 423 idk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~v-i~~~ 490 (775)
T TIGR00763 423 IDKIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RMEV-IELS 490 (775)
T ss_pred hhhcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--CeeE-EecC
Confidence 99998643311 234677788743222211 1111 1234688999999999999999997 7764 555
Q ss_pred -CCHHHHHHHHHHhhc-----C-----C--CCCHHHHHHHhcCCCC
Q 018745 298 -PTREDRIGVCKGIFR-----N-----D--NVADDDIVKLVDTFPG 330 (351)
Q Consensus 298 -P~~e~R~~Il~~~~~-----~-----~--~~~~~~l~~l~~gf~g 330 (351)
|+.+++.+|++.++. . . .++.+.+..++++|+.
T Consensus 491 ~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~ 536 (775)
T TIGR00763 491 GYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTR 536 (775)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcCh
Confidence 889999999877651 1 1 3557788888887764
No 46
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.8e-15 Score=156.73 Aligned_cols=188 Identities=18% Similarity=0.296 Sum_probs=132.8
Q ss_pred chhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcccc---------CCCCChHH
Q 018745 125 APAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAK 195 (351)
Q Consensus 125 ~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s---------~~~Ge~~~ 195 (351)
=+...|+++.+++-.-+. ...+- .+++|+||||+|||+|++.||+.+|..|+.++.+-+.+ .|+|...-
T Consensus 328 LekVKeRIlEyLAV~~l~-~~~kG-pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPG 405 (782)
T COG0466 328 LEKVKERILEYLAVQKLT-KKLKG-PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPG 405 (782)
T ss_pred chhHHHHHHHHHHHHHHh-ccCCC-cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCCh
Confidence 334444444444333222 22333 48999999999999999999999999999999987754 36676544
Q ss_pred HHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccC--CCCCceEEE
Q 018745 196 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE--ENPRVPIIV 273 (351)
Q Consensus 196 ~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~--~~~~v~II~ 273 (351)
.+-+-...| ...+| +++|||||++..+..|+. .++|++++|+.++..+..-|-.. +.+.|.+|+
T Consensus 406 rIiQ~mkka----~~~NP-v~LLDEIDKm~ss~rGDP---------aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFia 471 (782)
T COG0466 406 KIIQGMKKA----GVKNP-VFLLDEIDKMGSSFRGDP---------ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIA 471 (782)
T ss_pred HHHHHHHHh----CCcCC-eEEeechhhccCCCCCCh---------HHHHHhhcCHhhcCchhhccccCccchhheEEEe
Confidence 444555666 45566 889999999987764321 46788999977776665554443 368999999
Q ss_pred EeCCCCCCcchhccCCcceEEEeC-CCHHHHHHHHHHhhcC-----CCC-------CHHHHHHHhcCCCC
Q 018745 274 TGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRN-----DNV-------ADDDIVKLVDTFPG 330 (351)
Q Consensus 274 TTN~~~~Ld~aLlR~gRfd~~i~~-P~~e~R~~Il~~~~~~-----~~~-------~~~~l~~l~~gf~g 330 (351)
|+|..++|+.||+- ||+..-.- .+.+++.+|.+.++-. .++ ..+.+..++..|+.
T Consensus 472 TANsl~tIP~PLlD--RMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTR 539 (782)
T COG0466 472 TANSLDTIPAPLLD--RMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTR 539 (782)
T ss_pred ecCccccCChHHhc--ceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhH
Confidence 99999999999984 88874333 8999999998877632 222 25556666655543
No 47
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.6e-16 Score=158.80 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=139.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC----CccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg----~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEI 221 (351)
+..+..|||+||+|||||.|+++++++.. +++..++++.+...-...-.+.++..|.++ .+..|+||++||+
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~----~~~~PSiIvLDdl 503 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEA----LWYAPSIIVLDDL 503 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHH----HhhCCcEEEEcch
Confidence 34456899999999999999999999974 567788888776544444455666677776 8999999999999
Q ss_pred ccccCCC-CCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--C
Q 018745 222 DAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 298 (351)
Q Consensus 222 D~l~~~r-~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P 298 (351)
|.+++.. ..+++..+..+++..+|.+++. .. ...+..+.+|+|.+...+|.|-|.-+++|+..+.+ |
T Consensus 504 d~l~~~s~~e~~q~~~~~~rla~flnqvi~--------~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 504 DCLASASSNENGQDGVVSERLAAFLNQVIK--------IY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred hhhhccCcccCCcchHHHHHHHHHHHHHHH--------HH--HccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 9999833 2355667777777777766665 11 13355689999999999999999999999998887 8
Q ss_pred CHHHHHHHHHHhhcCCCCC-----HHHHHHHhcCCCCCCcccc
Q 018745 299 TREDRIGVCKGIFRNDNVA-----DDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 299 ~~e~R~~Il~~~~~~~~~~-----~~~l~~l~~gf~g~dldf~ 336 (351)
...+|.+|++.++.....+ ++-++..|+||...|+..|
T Consensus 574 ~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred chhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHH
Confidence 8999999999888765322 4558899999999999755
No 48
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.4e-15 Score=154.25 Aligned_cols=189 Identities=17% Similarity=0.243 Sum_probs=129.5
Q ss_pred CCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcccc---------CCCCCh
Q 018745 123 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEP 193 (351)
Q Consensus 123 ~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s---------~~~Ge~ 193 (351)
|-=+...+++..+++-.-+ .+--.-++++|+||||+|||++++.||..++..|+..+.+-+.+ .|+|..
T Consensus 414 Ygm~dVKeRILEfiAV~kL--rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAM 491 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKL--RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAM 491 (906)
T ss_pred cchHHHHHHHHHHHHHHhh--cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccC
Confidence 3333444444444444333 23333469999999999999999999999999999999887743 366654
Q ss_pred HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccC-CCCccc-CCCCCceE
Q 018745 194 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL-PGMYNK-EENPRVPI 271 (351)
Q Consensus 194 ~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l-~~~~~~-~~~~~v~I 271 (351)
.-.+-+..... +..+| +++|||||++.....|+ -.++|++++|+.++-.+ +-..+. .+.++|.+
T Consensus 492 PGkiIq~LK~v----~t~NP-liLiDEvDKlG~g~qGD---------PasALLElLDPEQNanFlDHYLdVp~DLSkVLF 557 (906)
T KOG2004|consen 492 PGKIIQCLKKV----KTENP-LILIDEVDKLGSGHQGD---------PASALLELLDPEQNANFLDHYLDVPVDLSKVLF 557 (906)
T ss_pred ChHHHHHHHhh----CCCCc-eEEeehhhhhCCCCCCC---------hHHHHHHhcChhhccchhhhccccccchhheEE
Confidence 33333344444 45555 89999999988432221 14678899997655433 333333 34789999
Q ss_pred EEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC-----C-------CCCHHHHHHHhcCCCC
Q 018745 272 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN-----D-------NVADDDIVKLVDTFPG 330 (351)
Q Consensus 272 I~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~-----~-------~~~~~~l~~l~~gf~g 330 (351)
|||+|..++|++||+- ||+. |++ ...+++.+|+++++-. . .++.+.+..+++.|+.
T Consensus 558 icTAN~idtIP~pLlD--RMEv-IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Ycr 627 (906)
T KOG2004|consen 558 ICTANVIDTIPPPLLD--RMEV-IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCR 627 (906)
T ss_pred EEeccccccCChhhhh--hhhe-eeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHH
Confidence 9999999999999984 8887 565 8889999998888743 1 3345566666666654
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6.5e-15 Score=153.11 Aligned_cols=174 Identities=14% Similarity=0.145 Sum_probs=139.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
.+....+||+|+||||||++++++|.++|.+++.+++.++.+...+.++..+...|.+| +...|+|||+-++|.+.
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a----~~~~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRA----RRCSPAVLFLRNLDVLG 503 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHH----hhcCceEEEEeccceee
Confidence 34556899999999999999999999999999999999999988888899999999999 99999999999999988
Q ss_pred CCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeCCCHHHHHH
Q 018745 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 305 (351)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~P~~e~R~~ 305 (351)
.+..+....+ +...+-.++. ..+......++++|+||+..+.|++.+.+-.+++..+..|+.++|.+
T Consensus 504 id~dgged~r-----l~~~i~~~ls--------~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~ 570 (953)
T KOG0736|consen 504 IDQDGGEDAR-----LLKVIRHLLS--------NEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLE 570 (953)
T ss_pred ecCCCchhHH-----HHHHHHHHHh--------cccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHH
Confidence 6554322111 1111111111 11112356788999999999999999999888888888899999999
Q ss_pred HHHHhhcCCCCC----HHHHHHHhcCCCCCCcccc
Q 018745 306 VCKGIFRNDNVA----DDDIVKLVDTFPGQSIGKF 336 (351)
Q Consensus 306 Il~~~~~~~~~~----~~~l~~l~~gf~g~dldf~ 336 (351)
|++.++....++ ...++..+.+|+-.++.-+
T Consensus 571 iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l 605 (953)
T KOG0736|consen 571 ILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEAL 605 (953)
T ss_pred HHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHH
Confidence 999998765444 6688889999998887644
No 50
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.58 E-value=1.1e-14 Score=156.09 Aligned_cols=157 Identities=17% Similarity=0.159 Sum_probs=112.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 215 (351)
....++|+||||||||++|+++|+.+ +..++.++.+.+. .++.|+.++.++.+|+++ .+..++|
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~----~~~~~~I 277 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEI----EKEPNAI 277 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHH----hccCCeE
Confidence 34578999999999999999999987 6778888887776 478899999999999998 6667999
Q ss_pred EEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC-----CCCcchhccCCc
Q 018745 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGR 290 (351)
Q Consensus 216 L~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~-----~~Ld~aLlR~gR 290 (351)
|||||||.+.+...... ... -....|...+. ...+.+|++||.. ..+|+||.| |
T Consensus 278 LfiDEih~l~~~g~~~~-~~~---~~~~~L~~~l~---------------~g~i~~IgaTt~~e~~~~~~~d~al~r--R 336 (731)
T TIGR02639 278 LFIDEIHTIVGAGATSG-GSM---DASNLLKPALS---------------SGKLRCIGSTTYEEYKNHFEKDRALSR--R 336 (731)
T ss_pred EEEecHHHHhccCCCCC-ccH---HHHHHHHHHHh---------------CCCeEEEEecCHHHHHHHhhhhHHHHH--h
Confidence 99999999986543111 111 11122222222 4567899999863 357999999 7
Q ss_pred ceEEEeC--CCHHHHHHHHHHhhcC------CCCCHH---HHHHHhcCCCC
Q 018745 291 MEKFYWA--PTREDRIGVCKGIFRN------DNVADD---DIVKLVDTFPG 330 (351)
Q Consensus 291 fd~~i~~--P~~e~R~~Il~~~~~~------~~~~~~---~l~~l~~gf~g 330 (351)
|.. +.+ |+.+++.+|++.+... -.++.+ .++.++..|-+
T Consensus 337 f~~-i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 337 FQK-IDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred Cce-EEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 764 554 9999999998866532 234444 45566666543
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=99.56 E-value=5e-14 Score=144.31 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=103.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHH-h-CCceEEEeccccc
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K-GKMCCLMINDLDA 223 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~-~~p~IL~IDEID~ 223 (351)
..++..+|||||||||||++|+++|+++++.++.+++++... ...++.....+..... . ..+.||+|||+|.
T Consensus 36 g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~ 109 (482)
T PRK04195 36 GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDG 109 (482)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCcc
Confidence 345789999999999999999999999999999998875432 2334444444321111 1 2678999999998
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcc-hhccCCcceEEEeCCCHHH
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAPTRED 302 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~-aLlR~gRfd~~i~~P~~e~ 302 (351)
+..... +.....|.+++. ..+.++|+++|++..+.+ ++.++ .....+..|+.++
T Consensus 110 L~~~~d---------~~~~~aL~~~l~---------------~~~~~iIli~n~~~~~~~k~Lrsr-~~~I~f~~~~~~~ 164 (482)
T PRK04195 110 IHGNED---------RGGARAILELIK---------------KAKQPIILTANDPYDPSLRELRNA-CLMIEFKRLSTRS 164 (482)
T ss_pred cccccc---------hhHHHHHHHHHH---------------cCCCCEEEeccCccccchhhHhcc-ceEEEecCCCHHH
Confidence 765321 011223444444 234689999999998887 45432 2233333499999
Q ss_pred HHHHHHHhhcCCC--CCHHHHHHHhcCCCC
Q 018745 303 RIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (351)
Q Consensus 303 R~~Il~~~~~~~~--~~~~~l~~l~~gf~g 330 (351)
...+++.++...+ ++.+.+..+++...|
T Consensus 165 i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 165 IVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999998887664 456666666665433
No 52
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.55 E-value=6.8e-14 Score=129.00 Aligned_cols=144 Identities=16% Similarity=0.154 Sum_probs=87.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
+..-.+|||||||+|||+||+.||++++.++..+++..+.. . ..+..++.. .....|||||||..+
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-----~-~dl~~il~~------l~~~~ILFIDEIHRl-- 113 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-----A-GDLAAILTN------LKEGDILFIDEIHRL-- 113 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-----C-HHHHHHHHT--------TT-EEEECTCCC---
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-----H-HHHHHHHHh------cCCCcEEEEechhhc--
Confidence 33458999999999999999999999999999988865421 1 223233322 245679999999653
Q ss_pred CCCCCccchhhhHHHHHHHHHhhcCCcc-ccCCCCccc----CCCCCceEEEEeCCCCCCcchhccCCcceEEEe--CCC
Q 018745 227 RMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNK----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (351)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~-~~l~~~~~~----~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~--~P~ 299 (351)
+..++..|+..++|-.- +.+..-.+. -..++--+|++|++...|.+||+- ||-.... ..+
T Consensus 114 -----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~ 180 (233)
T PF05496_consen 114 -----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYS 180 (233)
T ss_dssp ------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----T
T ss_pred -----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCC
Confidence 33445566666664221 111111000 113455689999999999999975 6666544 499
Q ss_pred HHHHHHHHHHhhcCCCCC
Q 018745 300 REDRIGVCKGIFRNDNVA 317 (351)
Q Consensus 300 ~e~R~~Il~~~~~~~~~~ 317 (351)
.++..+|+++-...-+++
T Consensus 181 ~~el~~Iv~r~a~~l~i~ 198 (233)
T PF05496_consen 181 EEELAKIVKRSARILNIE 198 (233)
T ss_dssp HHHHHHHHHHCCHCTT-E
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999998776655554
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.52 E-value=1.4e-13 Score=134.18 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=96.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
.++..++||||||||||++|+++|++++..+..+++..+.. ...+...+.. ...+++|||||+|.+..
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~------l~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTN------LEEGDVLFIDEIHRLSP 116 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHh------cccCCEEEEecHhhcch
Confidence 45678999999999999999999999999887776653321 1223333322 34678999999997743
Q ss_pred CCCCCccchhhhHHHHHHHHHhhcCCc-cccCCCCccc----CCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CC
Q 018745 227 RMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNK----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 299 (351)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~-~~~l~~~~~~----~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~ 299 (351)
.. .+.|...+++.. .+.+..-... ...++..+|++||++..++++|.. ||...+.+ |+
T Consensus 117 ~~-------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~ 181 (328)
T PRK00080 117 VV-------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYT 181 (328)
T ss_pred HH-------------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCC
Confidence 21 111222222111 0111110000 012446789999999999999875 67665554 99
Q ss_pred HHHHHHHHHHhhcCCCC--CHHHHHHHhc
Q 018745 300 REDRIGVCKGIFRNDNV--ADDDIVKLVD 326 (351)
Q Consensus 300 ~e~R~~Il~~~~~~~~~--~~~~l~~l~~ 326 (351)
.+++.+|++......++ +.+.+..++.
T Consensus 182 ~~e~~~il~~~~~~~~~~~~~~~~~~ia~ 210 (328)
T PRK00080 182 VEELEKIVKRSARILGVEIDEEGALEIAR 210 (328)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 99999999888765544 4444444443
No 54
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.51 E-value=6.7e-14 Score=149.73 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCL 216 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 216 (351)
+..+||+||||||||++|+++|... +..++.++.+.+. .++.|+.+..++.++..+ ....++||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l----~~~~~~IL 282 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNSIL 282 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHH----HhcCCCEE
Confidence 3467899999999999999999875 4445555555554 456788888888888877 66778999
Q ss_pred EecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----CCcchhccCCcc
Q 018745 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 291 (351)
Q Consensus 217 ~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----~Ld~aLlR~gRf 291 (351)
||||||.+++....... ..-+...|..++. ..++.+|++||..+ .+|++|.| ||
T Consensus 283 fIDEIh~L~g~g~~~~g----~~d~~nlLkp~L~---------------~g~i~vIgATt~~E~~~~~~~D~AL~r--RF 341 (758)
T PRK11034 283 FIDEIHTIIGAGAASGG----QVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR--RF 341 (758)
T ss_pred EeccHHHHhccCCCCCc----HHHHHHHHHHHHh---------------CCCeEEEecCChHHHHHHhhccHHHHh--hC
Confidence 99999999876531111 1112222333333 45689999999765 57999998 88
Q ss_pred eEEEeC--CCHHHHHHHHHHhh
Q 018745 292 EKFYWA--PTREDRIGVCKGIF 311 (351)
Q Consensus 292 d~~i~~--P~~e~R~~Il~~~~ 311 (351)
+. +.+ |+.+++.+|++.+.
T Consensus 342 q~-I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 342 QK-IDITEPSIEETVQIINGLK 362 (758)
T ss_pred cE-EEeCCCCHHHHHHHHHHHH
Confidence 64 554 99999999988764
No 55
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=6.7e-14 Score=145.50 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=117.0
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCcc
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~l 185 (351)
..|+|+|.+.+.. - ++....++.+...++. ....|+|||++|||||+|+++||+++ +..+++++..++
T Consensus 283 ~~~TFDnFvvG~s--N----~~A~aaa~avae~~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 283 PKYTFDTFVIGAS--N----RFAHAAAVAVAEAPAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred CCCCHhhhcCCCc--c----HHHHHHHHHHHhCccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4577888765421 1 2223344444433221 12349999999999999999999987 567788888776
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCC
Q 018745 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (351)
Q Consensus 186 ~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~ 265 (351)
.+.+...-.....+.|.+. -....+|+||||+.+.++.. . ...|.++++ .+ .
T Consensus 356 ~~el~~al~~~~~~~f~~~-----y~~~DLLlIDDIq~l~gke~-------t----qeeLF~l~N--------~l----~ 407 (617)
T PRK14086 356 TNEFINSIRDGKGDSFRRR-----YREMDILLVDDIQFLEDKES-------T----QEEFFHTFN--------TL----H 407 (617)
T ss_pred HHHHHHHHHhccHHHHHHH-----hhcCCEEEEehhccccCCHH-------H----HHHHHHHHH--------HH----H
Confidence 5443211101011123221 33578999999998876532 1 122334444 21 1
Q ss_pred CCCceEEEEeCCC----CCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCCC--HHHHHHHhcCCCCCCccccc
Q 018745 266 NPRVPIIVTGNDF----STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA--DDDIVKLVDTFPGQSIGKFP 337 (351)
Q Consensus 266 ~~~v~II~TTN~~----~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~~--~~~l~~l~~gf~g~dldf~g 337 (351)
..+..||+|+|.+ ..+++.|..+...-..+.+ |+.+.|.+|++..+...++. .+.+.-++..+++.--...|
T Consensus 408 e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 408 NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHH
Confidence 1234688888875 3567778764433455555 99999999999988766444 66666677777655333334
Q ss_pred hhh
Q 018745 338 VPL 340 (351)
Q Consensus 338 alr 340 (351)
+|.
T Consensus 488 aL~ 490 (617)
T PRK14086 488 ALI 490 (617)
T ss_pred HHH
Confidence 443
No 56
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.51 E-value=2.8e-14 Score=144.92 Aligned_cols=196 Identities=16% Similarity=0.201 Sum_probs=117.9
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCc
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE 184 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~ 184 (351)
...|+|++.+.+. . .......++.+...++ .....++||||||||||+|++++++++ +..++.+++.+
T Consensus 116 ~~~~tfd~fv~g~--~----n~~a~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGK--S----NRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCC--C----cHHHHHHHHHHHhCcC-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 3557788865431 1 1234455555555443 233569999999999999999999997 55677887776
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccC
Q 018745 185 LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264 (351)
Q Consensus 185 l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~ 264 (351)
+.+.+...-.......|... ...+.+|+|||+|.+.++.. ....|+.+++ .. .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~-----~~~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n--------~l---~ 241 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEK-----YRSVDVLLIDDIQFLAGKER-----------TQEEFFHTFN--------AL---H 241 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHH-----HhcCCEEEEehhhhhcCCHH-----------HHHHHHHHHH--------HH---H
Confidence 54332211000000112111 23578999999998765432 1123333333 11 0
Q ss_pred CCCCceEEEEeCCC-CC---CcchhccCCcce--EEEe--CCCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCcc
Q 018745 265 ENPRVPIIVTGNDF-ST---LYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 265 ~~~~v~II~TTN~~-~~---Ld~aLlR~gRfd--~~i~--~P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dld 334 (351)
..+.++|+|+|.+ .. +++.+.. ||. ..+. .|+.++|.+|++..+... .++.+.+..+++.+.+.--+
T Consensus 242 -~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 242 -EAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred -HCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHH
Confidence 1123466666653 33 5677664 664 3444 499999999999988654 56788888888888776555
Q ss_pred ccchhhcc
Q 018745 335 KFPVPLMM 342 (351)
Q Consensus 335 f~galr~~ 342 (351)
..|||..+
T Consensus 319 l~~~l~~l 326 (450)
T PRK00149 319 LEGALNRL 326 (450)
T ss_pred HHHHHHHH
Confidence 55555543
No 57
>PRK06893 DNA replication initiation factor; Validated
Probab=99.50 E-value=7.8e-14 Score=129.56 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=96.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
..++||||||||||+|++++|+++ +.....++..... ....+.++. ..+..+|+|||++.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------~~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLEN------LEQQDLVCLDDLQAVIG 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhh------cccCCEEEEeChhhhcC
Confidence 368999999999999999999986 3344444443111 001111222 23567999999998765
Q ss_pred CCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCC-CCCCc---chhccCCcceEEEeC--CCH
Q 018745 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTLY---APLIRDGRMEKFYWA--PTR 300 (351)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~-~~~Ld---~aLlR~gRfd~~i~~--P~~ 300 (351)
+.. ....|.++++ .. ....+.++|+|+|. |..++ +.|..+.+....+.+ |+.
T Consensus 106 ~~~-----------~~~~l~~l~n--------~~---~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 106 NEE-----------WELAIFDLFN--------RI---KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred ChH-----------HHHHHHHHHH--------HH---HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence 422 1123444444 11 11223344555554 55554 778876666666665 999
Q ss_pred HHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCccccchhh
Q 018745 301 EDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIGKFPVPL 340 (351)
Q Consensus 301 e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dldf~galr 340 (351)
++|.+|++..+... .++.+.+.-++..+++.--...++|.
T Consensus 164 e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 164 EQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999998877654 45677777777777765444444444
No 58
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.50 E-value=4e-14 Score=141.83 Aligned_cols=194 Identities=16% Similarity=0.196 Sum_probs=113.6
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCcc
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~l 185 (351)
..|+|++.+.+. . .......++.+...++ .....++||||+|+|||+|++++++++ +..++.+++.++
T Consensus 105 ~~~tfd~fi~g~--~----n~~a~~~~~~~~~~~~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 105 PKYTFDNFVVGK--S----NRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred CCCcccccccCC--c----HHHHHHHHHHHHhCcC-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 457788854331 1 2334455566555443 234579999999999999999999987 567788887665
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCC
Q 018745 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (351)
Q Consensus 186 ~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~ 265 (351)
...+...-...-...|... ...+.+|+|||+|.+.++.. ....|+++++ .++ .
T Consensus 178 ~~~~~~~~~~~~~~~~~~~-----~~~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n--------~~~---~ 230 (405)
T TIGR00362 178 TNDFVNALRNNKMEEFKEK-----YRSVDLLLIDDIQFLAGKER-----------TQEEFFHTFN--------ALH---E 230 (405)
T ss_pred HHHHHHHHHcCCHHHHHHH-----HHhCCEEEEehhhhhcCCHH-----------HHHHHHHHHH--------HHH---H
Confidence 4322110000000111111 12467999999998765421 1123344443 110 1
Q ss_pred CCCceEEEEeCC-CCC---CcchhccCCcceE--EEe--CCCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCccc
Q 018745 266 NPRVPIIVTGND-FST---LYAPLIRDGRMEK--FYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIGK 335 (351)
Q Consensus 266 ~~~v~II~TTN~-~~~---Ld~aLlR~gRfd~--~i~--~P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dldf 335 (351)
.+.++|+|+|. |.. +++.+.. ||.. .+. .|+.++|.+|++..+... .++.+.+..+++.+.+.--+.
T Consensus 231 -~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 231 -NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred -CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Confidence 12356666664 443 4566664 6653 344 499999999999888654 455777777777777654444
Q ss_pred cchhhc
Q 018745 336 FPVPLM 341 (351)
Q Consensus 336 ~galr~ 341 (351)
.|||..
T Consensus 308 ~~~l~~ 313 (405)
T TIGR00362 308 EGALNR 313 (405)
T ss_pred HHHHHH
Confidence 455443
No 59
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.3e-13 Score=141.48 Aligned_cols=175 Identities=21% Similarity=0.259 Sum_probs=145.5
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
.++.+|++++++||||||||.+++++|++ +..+..+++.+..+++.|+.+..++..|..+ ....|+++++||+|.
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~ii~~d~~~~ 87 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEA----EKLAPSIIFIDEIDA 87 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHH----HHhCCCeEeechhhh
Confidence 47889999999999999999999999999 7766888999999999999999999999999 888899999999999
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHH
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 301 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e 301 (351)
+...+.. .... ....+...|....+ ++ .... +.++..||++..+++++.|++||++.+++ |+..
T Consensus 88 ~~~~~~~-~~~~-~~~~v~~~l~~~~d--------~~---~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (494)
T COG0464 88 LAPKRSS-DQGE-VERRVVAQLLALMD--------GL---KRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEA 153 (494)
T ss_pred cccCccc-cccc-hhhHHHHHHHHhcc--------cc---cCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHH
Confidence 9998863 2223 33334456666666 44 2344 78888999999999999999999999996 9999
Q ss_pred HHHHHHHHhhcC----CCCCHHHHHHHhcCCCCCCccccc
Q 018745 302 DRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIGKFP 337 (351)
Q Consensus 302 ~R~~Il~~~~~~----~~~~~~~l~~l~~gf~g~dldf~g 337 (351)
.+.+|+..+.+. ...+...++..+.+|.++++....
T Consensus 154 ~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~ 193 (494)
T COG0464 154 GRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALA 193 (494)
T ss_pred HHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHH
Confidence 898887666543 345688999999999999987653
No 60
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.48 E-value=6.7e-13 Score=142.84 Aligned_cols=163 Identities=20% Similarity=0.316 Sum_probs=113.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcccc---------CCCCChHHHHHHHHHHHHHHHHhCCceEEEecc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 220 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDE 220 (351)
..++|+||||||||++++.+|+.++.+++.++.+...+ .|.|.....+.+.+..+ .... .||+|||
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~----~~~~-~villDE 424 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV----GVKN-PLFLLDE 424 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc----CCCC-CEEEEEC
Confidence 47999999999999999999999999999888765432 24444434444445444 2233 4899999
Q ss_pred cccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc--CCCCCceEEEEeCCCCCCcchhccCCcceEEEeC-
Q 018745 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 297 (351)
Q Consensus 221 ID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~--~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~- 297 (351)
+|++.....++ ...+|++++|+.++..+..-+-. .+.+++.+|+|+|.. .|++||+. ||+..-..
T Consensus 425 idk~~~~~~g~---------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~ii~~~~ 492 (784)
T PRK10787 425 IDKMSSDMRGD---------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RMEVIRLSG 492 (784)
T ss_pred hhhcccccCCC---------HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--ceeeeecCC
Confidence 99887543211 24578888885444333322111 346889999999988 49999985 88764443
Q ss_pred CCHHHHHHHHHHhhcC----------C--CCCHHHHHHHhcCCC
Q 018745 298 PTREDRIGVCKGIFRN----------D--NVADDDIVKLVDTFP 329 (351)
Q Consensus 298 P~~e~R~~Il~~~~~~----------~--~~~~~~l~~l~~gf~ 329 (351)
++.++..+|++.++.. . .++.+.+..++++|+
T Consensus 493 ~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt 536 (784)
T PRK10787 493 YTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT 536 (784)
T ss_pred CCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC
Confidence 8999999998777631 1 344667777777765
No 61
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.47 E-value=5.5e-13 Score=128.02 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=94.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
..+..++||||||||||+||+++|++++..+..+..+.+.. . ..+...+.. ...+.+|||||+|.+..
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~-----~-~~l~~~l~~------~~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK-----P-GDLAAILTN------LEEGDVLFIDEIHRLSP 95 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----c-hhHHHHHHh------cccCCEEEEehHhhhCH
Confidence 34567999999999999999999999998876665443211 1 112222211 34678999999987653
Q ss_pred CCCCCccchhhhHHHHHHHHHhhcCCcc-ccCCCCccc----CCCCCceEEEEeCCCCCCcchhccCCcceEEEe--CCC
Q 018745 227 RMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNK----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (351)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~-~~l~~~~~~----~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~--~P~ 299 (351)
.. ...|.+++++-.. +.+..-... ...+...+|++||++..++++++. ||...+. .|+
T Consensus 96 ~~-------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~ 160 (305)
T TIGR00635 96 AV-------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYT 160 (305)
T ss_pred HH-------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCC
Confidence 21 1223333332110 111110000 123446789999999999999876 6765555 499
Q ss_pred HHHHHHHHHHhhcCC--CCCHHHHHHHhc
Q 018745 300 REDRIGVCKGIFRND--NVADDDIVKLVD 326 (351)
Q Consensus 300 ~e~R~~Il~~~~~~~--~~~~~~l~~l~~ 326 (351)
.++..++++...... .++.+.+..+++
T Consensus 161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~ 189 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNVEIEPEAALEIAR 189 (305)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 999999998877544 444554444444
No 62
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.47 E-value=5.2e-13 Score=133.22 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=118.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc-cCCCC-ChHHHHHHHHHHHHHHH-----------------
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAG-EPAKLIRQRYREAADII----------------- 208 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~-s~~~G-e~~~~ir~~f~~A~~~~----------------- 208 (351)
.|.+|||+||||||||++|+++|+.++.+++.+++..+. .+|.| +.+..++.+|..|...+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae 125 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAE 125 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 468999999999999999999999999999999998886 47888 57788888888772100
Q ss_pred --------------------------------------------------------------------------------
Q 018745 209 -------------------------------------------------------------------------------- 208 (351)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (351)
T Consensus 126 ~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (441)
T TIGR00390 126 ERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLG 205 (441)
T ss_pred HHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhc
Confidence
Q ss_pred -------------------------------------H-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhc
Q 018745 209 -------------------------------------K-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 250 (351)
Q Consensus 209 -------------------------------------~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld 250 (351)
. .....|+||||||+++.+.. +....+...-+++.|+.+++
T Consensus 206 ~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkilE 284 (441)
T TIGR00390 206 GQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIVE 284 (441)
T ss_pred CCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCC-CCCCCCCccchhcccccccc
Confidence 0 12456999999999997653 23455666778888888888
Q ss_pred CCccccCCCCcccCCCCCceEEEEeC----CCCCCcchhccCCcceEEEeC--CCHHHHHHHH
Q 018745 251 NPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 307 (351)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~v~II~TTN----~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il 307 (351)
..+-.. -++.....++++||+.- .|+.|-|.|. |||-..+.+ ++.++-..||
T Consensus 285 Gt~v~~---k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 285 GSTVNT---KYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQALTTDDFERIL 342 (441)
T ss_pred Cceeee---cceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 433211 12335578888998764 5777888887 899999997 8999988885
No 63
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.46 E-value=4e-13 Score=146.05 Aligned_cols=138 Identities=20% Similarity=0.224 Sum_probs=102.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEEE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLM 217 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~ 217 (351)
..++|+||||||||++|+.+|..+ +.+++.++.+.+. .++.|+.++.++.+|.+.. +...++|||
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~---~~~~~~ILf 276 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA---KQEGNVILF 276 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHH---HcCCCeEEE
Confidence 468899999999999999999998 6788888887775 4577888888999988751 246789999
Q ss_pred ecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----CCcchhccCCcce
Q 018745 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRME 292 (351)
Q Consensus 218 IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----~Ld~aLlR~gRfd 292 (351)
|||++.+.+..+....... . +++. .. .....+.+|++|+..+ .+|+|+.| ||+
T Consensus 277 IDEih~l~~~~~~~~~~d~-----~----~~lk--------p~---l~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~ 334 (857)
T PRK10865 277 IDELHTMVGAGKADGAMDA-----G----NMLK--------PA---LARGELHCVGATTLDEYRQYIEKDAALER--RFQ 334 (857)
T ss_pred EecHHHhccCCCCccchhH-----H----HHhc--------ch---hhcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC
Confidence 9999999866431111111 1 1111 11 2356789999999876 48999999 886
Q ss_pred EEEe-CCCHHHHHHHHHHhhc
Q 018745 293 KFYW-APTREDRIGVCKGIFR 312 (351)
Q Consensus 293 ~~i~-~P~~e~R~~Il~~~~~ 312 (351)
..+. .|+.+++..|++.+..
T Consensus 335 ~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 335 KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred EEEeCCCCHHHHHHHHHHHhh
Confidence 5433 4999999999887754
No 64
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.46 E-value=5.3e-13 Score=131.10 Aligned_cols=125 Identities=20% Similarity=0.197 Sum_probs=90.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r 228 (351)
...++||||||||||+||+.||..++.+|..+++.. .+.+.+++++++|......++..|||||||..+-...
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q 120 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ 120 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh
Confidence 347999999999999999999999999999998853 2457899999999666556788999999996543211
Q ss_pred CCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEE-e-CCCCCCcchhccCCcceEEEeC--CCHHHHH
Q 018745 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT-G-NDFSTLYAPLIRDGRMEKFYWA--PTREDRI 304 (351)
Q Consensus 229 ~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~T-T-N~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~ 304 (351)
+..|+-. .+...+.+|++ | |..-.|.+||+.+.| .+++ .+.++..
T Consensus 121 -------------QD~lLp~---------------vE~G~iilIGATTENPsF~ln~ALlSR~~---vf~lk~L~~~di~ 169 (436)
T COG2256 121 -------------QDALLPH---------------VENGTIILIGATTENPSFELNPALLSRAR---VFELKPLSSEDIK 169 (436)
T ss_pred -------------hhhhhhh---------------hcCCeEEEEeccCCCCCeeecHHHhhhhh---eeeeecCCHHHHH
Confidence 1222222 23455667754 4 445589999997555 3333 7888888
Q ss_pred HHHHHhh
Q 018745 305 GVCKGIF 311 (351)
Q Consensus 305 ~Il~~~~ 311 (351)
+++++.+
T Consensus 170 ~~l~ra~ 176 (436)
T COG2256 170 KLLKRAL 176 (436)
T ss_pred HHHHHHH
Confidence 8887743
No 65
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.46 E-value=1.6e-12 Score=125.46 Aligned_cols=174 Identities=17% Similarity=0.272 Sum_probs=106.8
Q ss_pred CCCCchhHHHHHHH----HHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHH
Q 018745 121 GLYIAPAFMDKLVV----HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKL 196 (351)
Q Consensus 121 ~~~i~~~~~d~~~~----~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ 196 (351)
+.|.|..|-|-+.. ...+.+.. ....|..+||+||||+|||++|+++|++++.+++.++++. . . ...
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~--~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~----~-~~~ 83 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVK--KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C----R-IDF 83 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHh--cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c----c-HHH
Confidence 44555555443322 22333333 3456778888999999999999999999998888888765 1 1 122
Q ss_pred HHHHHHHHHHHHH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEe
Q 018745 197 IRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG 275 (351)
Q Consensus 197 ir~~f~~A~~~~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TT 275 (351)
+++.......... ...+.+|+|||+|.+... . ....|..+++ ....++++|+||
T Consensus 84 i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-------~-----~~~~L~~~le-------------~~~~~~~~Ilt~ 138 (316)
T PHA02544 84 VRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-------D-----AQRHLRSFME-------------AYSKNCSFIITA 138 (316)
T ss_pred HHHHHHHHHHhhcccCCCeEEEEECcccccCH-------H-----HHHHHHHHHH-------------hcCCCceEEEEc
Confidence 3332222111111 246789999999876221 0 1223444444 223566899999
Q ss_pred CCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHh-------hcCC--CCCHHHHHHHhcCCCC
Q 018745 276 NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGI-------FRND--NVADDDIVKLVDTFPG 330 (351)
Q Consensus 276 N~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~-------~~~~--~~~~~~l~~l~~gf~g 330 (351)
|.++.+++++++ ||..... .|+.+++.++++.+ +... .++.+.+..+++...+
T Consensus 139 n~~~~l~~~l~s--R~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 139 NNKNGIIEPLRS--RCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred CChhhchHHHHh--hceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 999999999986 5654433 59999988775432 2223 4445566666654443
No 66
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.46 E-value=8.5e-13 Score=132.61 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=75.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc-cCCCCChHH-HHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPAK-LIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~-s~~~Ge~~~-~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
...+||+||||||||++|+++|+.++.+|+.++++.+. ..|+|+... .+..++..+...+....++||||||||.+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 36899999999999999999999999999999998875 468887533 3455554432233456789999999999987
Q ss_pred CCCC-CccchhhhHHHHHHHHHhhcC
Q 018745 227 RMGG-TTQYTVNNQMVNATLMNIADN 251 (351)
Q Consensus 227 ~r~~-~~~~~~~~~~v~~~L~~lld~ 251 (351)
+..+ +....+....+++.|+++++.
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 6321 112233344577889999973
No 67
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.44 E-value=7.9e-13 Score=143.58 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=106.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC----------CccEEeccCccc--cCCCCChHHHHHHHHHHHHHHHH-hCCceEE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMG----------INPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKMCCL 216 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg----------~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~IL 216 (351)
..++|+||||||||++|+.+|+.+. ..++.++.+.+. ..+.|+.++.++.++.++ . ...++||
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~----~~~~~~~IL 284 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEV----KASPQPIIL 284 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHH----HhcCCCeEE
Confidence 3789999999999999999999862 446667776665 357788888999999987 4 3578999
Q ss_pred EecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC-----CCCcchhccCCcc
Q 018745 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGRM 291 (351)
Q Consensus 217 ~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~-----~~Ld~aLlR~gRf 291 (351)
|||||+.+.+.++...+.... ..|... .....+.+|+||+.. -.+|+||.| ||
T Consensus 285 fIDEih~l~~~g~~~~~~d~~-----n~Lkp~---------------l~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf 342 (852)
T TIGR03345 285 FIDEAHTLIGAGGQAGQGDAA-----NLLKPA---------------LARGELRTIAATTWAEYKKYFEKDPALTR--RF 342 (852)
T ss_pred EEeChHHhccCCCccccccHH-----HHhhHH---------------hhCCCeEEEEecCHHHHhhhhhccHHHHH--hC
Confidence 999999998765422221111 112111 224568899999864 358999999 77
Q ss_pred eEEEeC--CCHHHHHHHHHHhhcC----CC--CCH---HHHHHHhcCCC
Q 018745 292 EKFYWA--PTREDRIGVCKGIFRN----DN--VAD---DDIVKLVDTFP 329 (351)
Q Consensus 292 d~~i~~--P~~e~R~~Il~~~~~~----~~--~~~---~~l~~l~~gf~ 329 (351)
.. +.+ |+.+++.+|++.+... .+ ++. ..++.++++|-
T Consensus 343 ~~-i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 343 QV-VKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred eE-EEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 64 554 9999999997655432 12 333 34556676663
No 68
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=6.7e-13 Score=134.70 Aligned_cols=195 Identities=12% Similarity=0.116 Sum_probs=114.3
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCC---CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCc
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP---NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 184 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~---~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~ 184 (351)
..|+|+|.+-+. .- +.....++.+...+ .......++||||+|+|||+|++++++++ +..+++++...
T Consensus 106 ~~~tFdnFv~g~--~N----~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~ 179 (445)
T PRK12422 106 PLMTFANFLVTP--EN----DLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL 179 (445)
T ss_pred ccccccceeeCC--cH----HHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH
Confidence 457888877441 11 22333444444321 11223579999999999999999999986 67777887765
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccC
Q 018745 185 LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264 (351)
Q Consensus 185 l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~ 264 (351)
+...+...-...-.+.|... .....+|+|||++.+.++.. . ...|..+++ .+.
T Consensus 180 f~~~~~~~l~~~~~~~f~~~-----~~~~dvLiIDDiq~l~~k~~-------~----qeelf~l~N--------~l~--- 232 (445)
T PRK12422 180 FTEHLVSAIRSGEMQRFRQF-----YRNVDALFIEDIEVFSGKGA-------T----QEEFFHTFN--------SLH--- 232 (445)
T ss_pred HHHHHHHHHhcchHHHHHHH-----cccCCEEEEcchhhhcCChh-------h----HHHHHHHHH--------HHH---
Confidence 43221100000000112221 34678999999998765422 1 112223332 110
Q ss_pred CCCCceEEEEeCCC----CCCcchhccCCcce--EEEeC--CCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCcc
Q 018745 265 ENPRVPIIVTGNDF----STLYAPLIRDGRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 265 ~~~~v~II~TTN~~----~~Ld~aLlR~gRfd--~~i~~--P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dld 334 (351)
..+.++|+|||.+ ..+++.|.. ||. ..+.+ |+.++|.+|++...... .++.+.+.-++..+++.--.
T Consensus 233 -~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~ 309 (445)
T PRK12422 233 -TEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKS 309 (445)
T ss_pred -HCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Confidence 1234688888764 356677775 564 55555 99999999998887665 45566777777777765444
Q ss_pred ccchhhc
Q 018745 335 KFPVPLM 341 (351)
Q Consensus 335 f~galr~ 341 (351)
..|||..
T Consensus 310 L~g~l~~ 316 (445)
T PRK12422 310 LLHALTL 316 (445)
T ss_pred HHHHHHH
Confidence 4455543
No 69
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=4.2e-13 Score=136.11 Aligned_cols=191 Identities=15% Similarity=0.258 Sum_probs=109.1
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCcc
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~l 185 (351)
..|+|+|.+.+ +. .+.....++.+...++. ...++||||||||||+|++++|+++ +..++++++.++
T Consensus 100 ~~~tFdnFv~g----~~--n~~a~~~~~~~~~~~~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 100 PDYTFENFVVG----PG--NSFAYHAALEVAKNPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred CCCcccccccC----Cc--hHHHHHHHHHHHhCcCC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 45788887754 11 12233445555544432 3459999999999999999999986 456777777655
Q ss_pred ccCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccC
Q 018745 186 ESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264 (351)
Q Consensus 186 ~s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~ 264 (351)
...+...- ...+. .|... .+..+.+|+|||++.+.++.. .. ..|..+++ .+ .
T Consensus 172 ~~~~~~~~~~~~~~-~f~~~----~~~~~dvLlIDDi~~l~~~~~-------~q----~elf~~~n--------~l---~ 224 (440)
T PRK14088 172 LNDLVDSMKEGKLN-EFREK----YRKKVDVLLIDDVQFLIGKTG-------VQ----TELFHTFN--------EL---H 224 (440)
T ss_pred HHHHHHHHhcccHH-HHHHH----HHhcCCEEEEechhhhcCcHH-------HH----HHHHHHHH--------HH---H
Confidence 43221100 00011 12211 124688999999998765432 11 12222332 11 1
Q ss_pred CCCCceEEEEeC-CCCC---CcchhccCCcce--EEEe--CCCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCcc
Q 018745 265 ENPRVPIIVTGN-DFST---LYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 265 ~~~~v~II~TTN-~~~~---Ld~aLlR~gRfd--~~i~--~P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dld 334 (351)
..+..+|+|++ .|.. +.+.+.. ||. ..+. .|+.+.|.+|++..+... .++.+.+..+++.+.+.--.
T Consensus 225 -~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 225 -DSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred -HcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHH
Confidence 11235666664 5554 3445554 443 3333 499999999999888654 55677777777777764333
Q ss_pred ccchh
Q 018745 335 KFPVP 339 (351)
Q Consensus 335 f~gal 339 (351)
..|+|
T Consensus 302 L~g~l 306 (440)
T PRK14088 302 LRGAI 306 (440)
T ss_pred HHHHH
Confidence 33333
No 70
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.42 E-value=1.4e-12 Score=130.21 Aligned_cols=153 Identities=22% Similarity=0.257 Sum_probs=117.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcccc-CCCC-ChHHHHHHHHHHHHH--------------------
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAG-EPAKLIRQRYREAAD-------------------- 206 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s-~~~G-e~~~~ir~~f~~A~~-------------------- 206 (351)
|..+||+||||||||++|+++|+.++.+|+.++++.+.. +|.| +.+..++++|..|..
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ 129 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEE 129 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999998875 7988 557888888888720
Q ss_pred -----H--------------------------------------------------------------------------
Q 018745 207 -----I-------------------------------------------------------------------------- 207 (351)
Q Consensus 207 -----~-------------------------------------------------------------------------- 207 (351)
+
T Consensus 130 ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (443)
T PRK05201 130 RILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPK 209 (443)
T ss_pred HHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCC
Confidence 0
Q ss_pred ----------------------------------HH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCC
Q 018745 208 ----------------------------------IK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 252 (351)
Q Consensus 208 ----------------------------------~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~ 252 (351)
+. .....|+||||||+++.+.++ ....+...-+++.|+.+++..
T Consensus 210 ~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~ 288 (443)
T PRK05201 210 KKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGS 288 (443)
T ss_pred CCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccccc
Confidence 00 124569999999999977542 234666677888888888843
Q ss_pred ccccCCCCcccCCCCCceEEEEeC----CCCCCcchhccCCcceEEEeC--CCHHHHHHHH
Q 018745 253 TCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 307 (351)
Q Consensus 253 ~~~~l~~~~~~~~~~~v~II~TTN----~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il 307 (351)
+-.. -++.....+|++||+.- .|+.|-|.|. |||-..+.+ ++.++-.+||
T Consensus 289 ~v~~---k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 289 TVST---KYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred eeee---cceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 3211 12335577888998764 5677888887 899999997 8999988885
No 71
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.41 E-value=2e-12 Score=129.72 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=83.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~-s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~ 227 (351)
..+||+||||||||++|+++|+.++.++..++++.+. .+|.|.. +..+...+..+...+....+++|||||||.+..+
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK 196 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh
Confidence 6899999999999999999999999999999988874 4677874 3444444443322223567889999999999875
Q ss_pred CCC-CccchhhhHHHHHHHHHhhcCCccccCC-CCcccCCCCCceEEEEeCC
Q 018745 228 MGG-TTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGND 277 (351)
Q Consensus 228 r~~-~~~~~~~~~~v~~~L~~lld~~~~~~l~-~~~~~~~~~~v~II~TTN~ 277 (351)
+.+ +....+....+++.|+++++.. .+.++ .-.+.....+..+|.|+|-
T Consensus 197 ~~~~s~~~dvsg~~vq~~LL~iLeG~-~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 197 SENPSITRDVSGEGVQQALLKIIEGT-VANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred hccccccccccchhHHHHHHHHhhcc-ceecccCCCccccCCCeEEEEcCCc
Confidence 431 1123333445777888888621 11111 1111223445567777775
No 72
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=5.1e-12 Score=128.44 Aligned_cols=146 Identities=13% Similarity=0.213 Sum_probs=95.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCc------------------------cEEeccCccccCCCCChHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 201 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f 201 (351)
.+.+..+|||||+|||||++|+++|+.++.. ++.+++. .......+|++.
T Consensus 37 ~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~ 110 (484)
T PRK14956 37 GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAA------SNRGIENIRELR 110 (484)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechh------hcccHHHHHHHH
Confidence 3467789999999999999999999998763 1111111 011234566655
Q ss_pred HHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCC
Q 018745 202 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (351)
Q Consensus 202 ~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~L 281 (351)
..+...-..++..|+||||+|.+.. .....|+..++ .....+.+|++|+.++.|
T Consensus 111 e~l~~~p~~g~~KV~IIDEah~Ls~-------------~A~NALLKtLE-------------EPp~~viFILaTte~~kI 164 (484)
T PRK14956 111 DNVKFAPMGGKYKVYIIDEVHMLTD-------------QSFNALLKTLE-------------EPPAHIVFILATTEFHKI 164 (484)
T ss_pred HHHHhhhhcCCCEEEEEechhhcCH-------------HHHHHHHHHhh-------------cCCCceEEEeecCChhhc
Confidence 5542111245678999999987632 12344555555 334677888899999999
Q ss_pred cchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCC--HHHHHHHh
Q 018745 282 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKLV 325 (351)
Q Consensus 282 d~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~--~~~l~~l~ 325 (351)
.++++. |+-.+.. -++.++-.+.++.++..+++. .+.+..++
T Consensus 165 ~~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia 209 (484)
T PRK14956 165 PETILS--RCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA 209 (484)
T ss_pred cHHHHh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999886 5554433 377777778888887766554 44444443
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=99.40 E-value=1.4e-12 Score=126.73 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=95.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC-----ccEEeccCccccCCCCChHHHHHHHHHHHHHH---HHhCCceEEEecccc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADI---IKKGKMCCLMINDLD 222 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~-----~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~---~~~~~p~IL~IDEID 222 (351)
.+|||||||||||++|+++|+++.. .++.+++++.. | ...+++........ ...+...|++|||+|
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~----~--~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d 109 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR----G--IDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD 109 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc----c--HHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence 5899999999999999999999722 24445544221 1 12334333221100 012456899999999
Q ss_pred cccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEe--CCCH
Q 018745 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (351)
Q Consensus 223 ~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~--~P~~ 300 (351)
.+... .+..|...++ .......+|++||..+.+.+++.. |+. .+. -|+.
T Consensus 110 ~lt~~-------------aq~aL~~~lE-------------~~~~~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~ 160 (319)
T PLN03025 110 SMTSG-------------AQQALRRTME-------------IYSNTTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSD 160 (319)
T ss_pred hcCHH-------------HHHHHHHHHh-------------cccCCceEEEEeCCccccchhHHH--hhh-cccCCCCCH
Confidence 76421 1233444444 122345688899999999999886 443 333 3889
Q ss_pred HHHHHHHHHhhcCCCC--CHHHHHHHhcCCCCCCccccchhhccC
Q 018745 301 EDRIGVCKGIFRNDNV--ADDDIVKLVDTFPGQSIGKFPVPLMMQ 343 (351)
Q Consensus 301 e~R~~Il~~~~~~~~~--~~~~l~~l~~gf~g~dldf~galr~~q 343 (351)
++...+++.+++.+++ +.+.+..+++...| |+ ..|+..+|
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-Dl--R~aln~Lq 202 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DM--RQALNNLQ 202 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH--HHHHHHHH
Confidence 9999999888876654 46677777665443 33 34444443
No 74
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.40 E-value=1.7e-12 Score=141.31 Aligned_cols=156 Identities=18% Similarity=0.190 Sum_probs=108.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccc--cCCCCChHHHHHHHHHHHHHHHH-hCCceE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKMCC 215 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~I 215 (351)
...++|+||||||||++++++|..+ +.+++.++.+.+. .+|.|+.++.++.++.++ . ...++|
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~----~~~~~~~I 269 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEV----TKSEGQII 269 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHH----HhcCCCeE
Confidence 3467899999999999999999986 5677777777665 457788888888888876 4 346899
Q ss_pred EEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----CCcchhccCCc
Q 018745 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGR 290 (351)
Q Consensus 216 L~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----~Ld~aLlR~gR 290 (351)
||||||+.+.+......... .. +++. .+ .....+.+|++|+..+ .+|+++.| |
T Consensus 270 LfIDEih~l~~~g~~~~~~d-----~~----~~Lk--------~~---l~~g~i~~IgaTt~~e~r~~~~~d~al~r--R 327 (852)
T TIGR03346 270 LFIDELHTLVGAGKAEGAMD-----AG----NMLK--------PA---LARGELHCIGATTLDEYRKYIEKDAALER--R 327 (852)
T ss_pred EEeccHHHhhcCCCCcchhH-----HH----HHhc--------hh---hhcCceEEEEeCcHHHHHHHhhcCHHHHh--c
Confidence 99999999986432111111 11 1111 11 2356789999998763 57999999 7
Q ss_pred ceEEEe-CCCHHHHHHHHHHhhcC----CC--CCH---HHHHHHhcCCCC
Q 018745 291 MEKFYW-APTREDRIGVCKGIFRN----DN--VAD---DDIVKLVDTFPG 330 (351)
Q Consensus 291 fd~~i~-~P~~e~R~~Il~~~~~~----~~--~~~---~~l~~l~~gf~g 330 (351)
|...+. .|+.+++..|++.+... .+ +.. ...+.++.+|-.
T Consensus 328 f~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 328 FQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred CCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 875332 39999999998776433 12 333 344566666643
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.1e-12 Score=128.54 Aligned_cols=148 Identities=11% Similarity=0.135 Sum_probs=95.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCC------------------------ccEEeccCccccCCCCChHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRY 201 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~------------------------~~i~vs~s~l~s~~~Ge~~~~ir~~f 201 (351)
.+.|..+|||||||||||++|+++|+.++. .++.++++. ......+|++.
T Consensus 33 ~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~ 106 (472)
T PRK14962 33 NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIR 106 (472)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHH
Confidence 356778999999999999999999999865 233333321 11234566655
Q ss_pred HHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCC
Q 018745 202 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (351)
Q Consensus 202 ~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~L 281 (351)
..+...-..+...||||||+|.+.. .....|+..++ .....+.+|++||.+..+
T Consensus 107 ~~~~~~p~~~~~kVvIIDE~h~Lt~-------------~a~~~LLk~LE-------------~p~~~vv~Ilattn~~kl 160 (472)
T PRK14962 107 DAVGYRPMEGKYKVYIIDEVHMLTK-------------EAFNALLKTLE-------------EPPSHVVFVLATTNLEKV 160 (472)
T ss_pred HHHhhChhcCCeEEEEEEChHHhHH-------------HHHHHHHHHHH-------------hCCCcEEEEEEeCChHhh
Confidence 5542111134567999999986631 11234555555 223456677777788899
Q ss_pred cchhccCCcceEEEe--CCCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCC
Q 018745 282 YAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTF 328 (351)
Q Consensus 282 d~aLlR~gRfd~~i~--~P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf 328 (351)
+++++.+ +.. +. -|+.++...+++..+... .++.+.+..++...
T Consensus 161 ~~~L~SR--~~v-v~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s 208 (472)
T PRK14962 161 PPTIISR--CQV-IEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRA 208 (472)
T ss_pred hHHHhcC--cEE-EEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 9999864 433 33 388889888988887654 45566666666543
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=3.1e-12 Score=135.09 Aligned_cols=157 Identities=13% Similarity=0.167 Sum_probs=101.8
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc------------------------cEEeccCccccCC
Q 018745 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGN 189 (351)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~------------------------~i~vs~s~l~s~~ 189 (351)
....++++. ..+.+..+||+||+|||||++|+++|+.+++. ++.++..
T Consensus 25 v~~L~~aL~--~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAa------ 96 (830)
T PRK07003 25 VRALTHALD--GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAA------ 96 (830)
T ss_pred HHHHHHHHh--cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccc------
Confidence 334445544 34668899999999999999999999998753 1111111
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCc
Q 018745 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (351)
Q Consensus 190 ~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v 269 (351)
.......++++.+.+...-..++..|+||||+|.+.. ...+.|+..++ +....+
T Consensus 97 s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-------------~A~NALLKtLE-------------EPP~~v 150 (830)
T PRK07003 97 SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-------------HAFNAMLKTLE-------------EPPPHV 150 (830)
T ss_pred ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-------------HHHHHHHHHHH-------------hcCCCe
Confidence 0112344666665542111145678999999997632 11334555666 335678
Q ss_pred eEEEEeCCCCCCcchhccCCcceEEEeC-CCHHHHHHHHHHhhcCCCCC--HHHHHHHhc
Q 018745 270 PIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA--DDDIVKLVD 326 (351)
Q Consensus 270 ~II~TTN~~~~Ld~aLlR~gRfd~~i~~-P~~e~R~~Il~~~~~~~~~~--~~~l~~l~~ 326 (351)
.+|++||+++.|.+.++. ||-++-.- ++.++..++|+.++..+++. .+.+..++.
T Consensus 151 ~FILaTtd~~KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~ 208 (830)
T PRK07003 151 KFILATTDPQKIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLAR 208 (830)
T ss_pred EEEEEECChhhccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 899999999999998875 66443333 78888888998888776654 444444433
No 77
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.39 E-value=1.3e-12 Score=141.69 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=111.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 214 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 214 (351)
+.+..++|+||||||||++|+.+|..+ +..++.++.+.+. .+|.|+.+..++.++.++ ....++
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~----~~~~~~ 273 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEI----QENNNI 273 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHH----HhcCCe
Confidence 445688999999999999999999987 3678888888776 467888899999999988 666789
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----CCcchhccCC
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG 289 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----~Ld~aLlR~g 289 (351)
|||||||+.+.+..+..... .+...|...+ ....+.+|++|+..+ ..|+++.|
T Consensus 274 ILfiDEih~l~~~g~~~g~~-----~~a~lLkp~l---------------~rg~l~~IgaTt~~ey~~~ie~D~aL~r-- 331 (821)
T CHL00095 274 ILVIDEVHTLIGAGAAEGAI-----DAANILKPAL---------------ARGELQCIGATTLDEYRKHIEKDPALER-- 331 (821)
T ss_pred EEEEecHHHHhcCCCCCCcc-----cHHHHhHHHH---------------hCCCcEEEEeCCHHHHHHHHhcCHHHHh--
Confidence 99999999998764311111 1111122222 245678999998754 57899998
Q ss_pred cceEEEe-CCCHHHHHHHHHHhhc------CCCCCHH---HHHHHhcCCCC
Q 018745 290 RMEKFYW-APTREDRIGVCKGIFR------NDNVADD---DIVKLVDTFPG 330 (351)
Q Consensus 290 Rfd~~i~-~P~~e~R~~Il~~~~~------~~~~~~~---~l~~l~~gf~g 330 (351)
||..... .|+.++...|++.+.. .-.++.+ .+..++.+|-+
T Consensus 332 Rf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 332 RFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred cceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 7776322 3999999888765432 1234533 45566777654
No 78
>PRK05642 DNA replication initiation factor; Validated
Probab=99.39 E-value=2e-12 Score=120.57 Aligned_cols=184 Identities=13% Similarity=0.172 Sum_probs=107.0
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC
Q 018745 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG 188 (351)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~ 188 (351)
.|+|+|.+.+. .......++++...........++||||+|||||+|++++|+++ +..+++++..++...
T Consensus 15 ~~tfdnF~~~~-------~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 15 DATFANYYPGA-------NAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR 87 (234)
T ss_pred cccccccCcCC-------hHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence 46778866431 13344555554432222234679999999999999999999865 567777777655432
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCC
Q 018745 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (351)
Q Consensus 189 ~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~ 268 (351)
. ....+.. ....+|+|||++.+.++.. ....|.++++ .. . ..+
T Consensus 88 ~--------~~~~~~~------~~~d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n--------~~---~-~~g 130 (234)
T PRK05642 88 G--------PELLDNL------EQYELVCLDDLDVIAGKAD-----------WEEALFHLFN--------RL---R-DSG 130 (234)
T ss_pred h--------HHHHHhh------hhCCEEEEechhhhcCChH-----------HHHHHHHHHH--------HH---H-hcC
Confidence 1 1111111 1235899999997765422 1123444444 11 1 123
Q ss_pred ceEEEEeCC-CCCC---cchhccCCcce--EEEeC--CCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCccccch
Q 018745 269 VPIIVTGND-FSTL---YAPLIRDGRME--KFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIGKFPV 338 (351)
Q Consensus 269 v~II~TTN~-~~~L---d~aLlR~gRfd--~~i~~--P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dldf~ga 338 (351)
.++|+|++. |..+ .|.|.. ||. ..+.+ |+.++|.+|++...... .++.+.+..++..+.+.--...++
T Consensus 131 ~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 131 RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 356666664 4333 566664 552 34443 89999999988544433 566777777777777654444444
Q ss_pred hhc
Q 018745 339 PLM 341 (351)
Q Consensus 339 lr~ 341 (351)
|..
T Consensus 209 l~~ 211 (234)
T PRK05642 209 LER 211 (234)
T ss_pred HHH
Confidence 443
No 79
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.38 E-value=1.7e-11 Score=116.10 Aligned_cols=145 Identities=16% Similarity=0.255 Sum_probs=89.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCc------cccCCCCChHHHHHHHHHHH--------------HHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE------LESGNAGEPAKLIRQRYREA--------------ADIIK 209 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~------l~s~~~Ge~~~~ir~~f~~A--------------~~~~~ 209 (351)
..+||+||||||||++|+++|+.+|.+++.+++.. +...+.+.....+.+.|... ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46899999999999999999999999999887654 22222221111111111100 00000
Q ss_pred -hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc----CCCCCceEEEEeCCCC-----
Q 018745 210 -KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK----EENPRVPIIVTGNDFS----- 279 (351)
Q Consensus 210 -~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~----~~~~~v~II~TTN~~~----- 279 (351)
.....+|+|||||.+.. .+...|+.++++ ..+.+++..+. ...+...||+|+|...
T Consensus 102 A~~~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKP-------------ETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHcCCEEEEcchhhCCH-------------HHHHHHHHHhcC-CeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 12346999999986321 234566667763 22223322111 1234567999999753
Q ss_pred CCcchhccCCcceEEEe--CCCHHHHHHHHHHhh
Q 018745 280 TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 311 (351)
Q Consensus 280 ~Ld~aLlR~gRfd~~i~--~P~~e~R~~Il~~~~ 311 (351)
.++++|++ ||- .++ .|+.++-.+|++..+
T Consensus 168 ~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence 56888887 553 344 499999999998876
No 80
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=5.2e-12 Score=126.32 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=98.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccE---------------EeccCcc--ccCC-CCChHHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI---------------MMSAGEL--ESGN-AGEPAKLIRQRYREAAD 206 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i---------------~vs~s~l--~s~~-~Ge~~~~ir~~f~~A~~ 206 (351)
+.+.|.++|||||||+|||++|+++|+.+.+.-- .-+..++ .... ..-....+|++++.+..
T Consensus 32 ~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~ 111 (394)
T PRK07940 32 GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAAR 111 (394)
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHh
Confidence 3457899999999999999999999998765310 0000011 0000 01123457777777632
Q ss_pred HHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhc
Q 018745 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (351)
Q Consensus 207 ~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLl 286 (351)
.-..+...|+||||+|.+... ....|+..++ .+..++.+|++|++++.|.|+++
T Consensus 112 ~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE-------------ep~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 112 RPSTGRWRIVVIEDADRLTER-------------AANALLKAVE-------------EPPPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred CcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCCeEEEEECChHHChHHHH
Confidence 112456679999999976321 1234666666 33455677777777999999988
Q ss_pred cCCcceEEEeC--CCHHHHHHHHHHhhcCCCCCHH---HHHHHhcCCCCCCccc
Q 018745 287 RDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIGK 335 (351)
Q Consensus 287 R~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~~~~---~l~~l~~gf~g~dldf 335 (351)
++ +- .+.+ |+.++..+++... .+++.+ .++.++.|.++..+.+
T Consensus 166 SR--c~-~i~f~~~~~~~i~~~L~~~---~~~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 166 SR--CR-HVALRTPSVEAVAEVLVRR---DGVDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred hh--Ce-EEECCCCCHHHHHHHHHHh---cCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 74 43 3443 8888887777532 245544 4556667766655444
No 81
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=7.5e-12 Score=130.64 Aligned_cols=147 Identities=14% Similarity=0.183 Sum_probs=97.8
Q ss_pred HHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc-----------------------------cEEeccCcc
Q 018745 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------------PIMMSAGEL 185 (351)
Q Consensus 135 ~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~-----------------------------~i~vs~s~l 185 (351)
...++++. ..+.+..+||+||+|+|||++|+++|+.+++. ++.+++.
T Consensus 26 ~~L~~al~--~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAa-- 101 (700)
T PRK12323 26 RALTHALE--QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAA-- 101 (700)
T ss_pred HHHHHHHH--hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEeccc--
Confidence 34445554 34668899999999999999999999999762 1111111
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCC
Q 018745 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (351)
Q Consensus 186 ~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~ 265 (351)
.......+|++.+.+...-..++..|+||||+|.+.. ...+.|+..++ +.
T Consensus 102 ----s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-------------~AaNALLKTLE-------------EP 151 (700)
T PRK12323 102 ----SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-------------HAFNAMLKTLE-------------EP 151 (700)
T ss_pred ----ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-------------HHHHHHHHhhc-------------cC
Confidence 0112345666665542211256678999999997632 12335566666 34
Q ss_pred CCCceEEEEeCCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCC
Q 018745 266 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (351)
Q Consensus 266 ~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~ 317 (351)
..++.+|++||+++.|.+.++. |+-.+-. .++.++..+.++.++..+++.
T Consensus 152 P~~v~FILaTtep~kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~ 202 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIA 202 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCC
Confidence 5678899999999999999885 5544333 388888888888777665554
No 82
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.35 E-value=1e-11 Score=115.92 Aligned_cols=154 Identities=13% Similarity=0.168 Sum_probs=92.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC---CccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg---~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
..++||||+|||||+|++++|+++. ..+..++...... ...+..+.. .+..+|+|||++.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~------~~~dlliiDdi~~~~~ 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGM------EQLSLVCIDNIECIAG 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHh------hhCCEEEEeChhhhcC
Confidence 4799999999999999999998764 3445555432211 011111111 1236899999997764
Q ss_pred CCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCC-CCC---CcchhccCCcce--EEEeC--C
Q 018745 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYAPLIRDGRME--KFYWA--P 298 (351)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~-~~~---Ld~aLlR~gRfd--~~i~~--P 298 (351)
+.. . ...|.++++ .. .+..+..+|+||+. |.. +.|.|.. |+. ..+.+ |
T Consensus 112 ~~~-------~----~~~lf~l~n--------~~---~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~ 167 (235)
T PRK08084 112 DEL-------W----EMAIFDLYN--------RI---LESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPL 167 (235)
T ss_pred CHH-------H----HHHHHHHHH--------HH---HHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCC
Confidence 321 1 112223333 11 11233456666654 444 4677775 663 44454 8
Q ss_pred CHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCccccchhhc
Q 018745 299 TREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIGKFPVPLM 341 (351)
Q Consensus 299 ~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dldf~galr~ 341 (351)
+.+++.++++...... .++.+.+..++..+.+.--...++|..
T Consensus 168 ~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 168 SDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 9999999998866544 566778888888887765555555544
No 83
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.35 E-value=1.4e-12 Score=120.50 Aligned_cols=193 Identities=20% Similarity=0.221 Sum_probs=108.2
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCcc
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~l 185 (351)
.+|+|+|.+.+. . .+...+.+++....++.. -..++||||+|+|||+|.++||+++ +..++++++.++
T Consensus 3 ~~~tFdnfv~g~-----~-N~~a~~~~~~ia~~~~~~-~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGE-----S-NELAYAAAKAIAENPGER-YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TT-----T-THHHHHHHHHHHHSTTTS-SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCC-----c-HHHHHHHHHHHHhcCCCC-CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 367889876431 1 244556666666554442 2358999999999999999999875 456777777655
Q ss_pred ccCCCCChHHHHHHHHHHHHHHH-HhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccC
Q 018745 186 ESGNAGEPAKLIRQRYREAADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264 (351)
Q Consensus 186 ~s~~~Ge~~~~ir~~f~~A~~~~-~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~ 264 (351)
...+.. .++. ....+.. .-....+|+|||++.+.++. ..+..|.++++ .+ .
T Consensus 76 ~~~~~~----~~~~--~~~~~~~~~~~~~DlL~iDDi~~l~~~~-----------~~q~~lf~l~n--------~~---~ 127 (219)
T PF00308_consen 76 IREFAD----ALRD--GEIEEFKDRLRSADLLIIDDIQFLAGKQ-----------RTQEELFHLFN--------RL---I 127 (219)
T ss_dssp HHHHHH----HHHT--TSHHHHHHHHCTSSEEEEETGGGGTTHH-----------HHHHHHHHHHH--------HH---H
T ss_pred HHHHHH----HHHc--ccchhhhhhhhcCCEEEEecchhhcCch-----------HHHHHHHHHHH--------HH---H
Confidence 432110 0000 0000111 13466899999999876431 12344555555 22 1
Q ss_pred CCCCceEEEEeC-CCCCC---cchhccCCcceE--EEe--CCCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCcc
Q 018745 265 ENPRVPIIVTGN-DFSTL---YAPLIRDGRMEK--FYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 265 ~~~~v~II~TTN-~~~~L---d~aLlR~gRfd~--~i~--~P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dld 334 (351)
..+.++|+|++ .|..+ ++.|.- ||.- .+. .|+.++|.+|++..+... .++.+.+.-++..+++.--+
T Consensus 128 -~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~ 204 (219)
T PF00308_consen 128 -ESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRE 204 (219)
T ss_dssp -HTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHH
T ss_pred -hhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHH
Confidence 12346777775 44544 455543 4432 344 499999999998887655 45567777777777665444
Q ss_pred ccchhhc
Q 018745 335 KFPVPLM 341 (351)
Q Consensus 335 f~galr~ 341 (351)
..++|..
T Consensus 205 L~~~l~~ 211 (219)
T PF00308_consen 205 LEGALNR 211 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 84
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.34 E-value=1.1e-11 Score=124.84 Aligned_cols=140 Identities=17% Similarity=0.218 Sum_probs=92.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r 228 (351)
+..++||||||||||++|+++|+.++..++.+++... ....++.++..+......+...+|||||+|.+...
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~- 107 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA- 107 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-
Confidence 3479999999999999999999999999998887521 23456677776643333457889999999865321
Q ss_pred CCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEe--CCCCCCcchhccCCcceEEEeC--CCHHHHH
Q 018745 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRI 304 (351)
Q Consensus 229 ~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TT--N~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~ 304 (351)
....|+..++ ...+.+|++| |....+++++++ |+. .+.+ |+.++..
T Consensus 108 ------------~q~~LL~~le---------------~~~iilI~att~n~~~~l~~aL~S--R~~-~~~~~~ls~e~i~ 157 (413)
T PRK13342 108 ------------QQDALLPHVE---------------DGTITLIGATTENPSFEVNPALLS--RAQ-VFELKPLSEEDIE 157 (413)
T ss_pred ------------HHHHHHHHhh---------------cCcEEEEEeCCCChhhhccHHHhc--cce-eeEeCCCCHHHHH
Confidence 1223444433 2334566554 344578999987 442 3343 8888888
Q ss_pred HHHHHhhcCC-----CCCHHHHHHHhc
Q 018745 305 GVCKGIFRND-----NVADDDIVKLVD 326 (351)
Q Consensus 305 ~Il~~~~~~~-----~~~~~~l~~l~~ 326 (351)
.+++..+... .++.+.+..++.
T Consensus 158 ~lL~~~l~~~~~~~i~i~~~al~~l~~ 184 (413)
T PRK13342 158 QLLKRALEDKERGLVELDDEALDALAR 184 (413)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 8888776431 455555554444
No 85
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.34 E-value=2.1e-11 Score=126.80 Aligned_cols=159 Identities=19% Similarity=0.346 Sum_probs=99.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHH----hCCceEEEecccccc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLMINDLDAG 224 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~----~~~p~IL~IDEID~l 224 (351)
.+++||+||||-|||+||+.||+++|+.++.+++++=. +...++.....|...-. ..+|.||+|||||..
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 38999999999999999999999999999999998543 23345544444422211 378999999999842
Q ss_pred cCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcc---------cCCCCCceEEEEeCCCCCCcchhccCCc-ceEE
Q 018745 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN---------KEENPRVPIIVTGNDFSTLYAPLIRDGR-MEKF 294 (351)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~---------~~~~~~v~II~TTN~~~~Ld~aLlR~gR-fd~~ 294 (351)
. .....+++.++... ..+..+-.+ ....-..||||.+|+ |+.|-+|+-| +-..
T Consensus 400 ~-------------~~~Vdvilslv~a~-~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd---LYaPaLR~Lr~~A~i 462 (877)
T KOG1969|consen 400 P-------------RAAVDVILSLVKAT-NKQATGKQAKKDKKRKKKRSKLLTRPIICICND---LYAPALRPLRPFAEI 462 (877)
T ss_pred c-------------HHHHHHHHHHHHhh-cchhhcCcccchhhhhhhccccccCCEEEEecC---ccchhhhhcccceEE
Confidence 2 22233444444310 111111111 011234799999998 5666666665 4444
Q ss_pred Ee-C-CCHHHHHHHHHHhhcCCCC--CHHHHHHHhcCCCC
Q 018745 295 YW-A-PTREDRIGVCKGIFRNDNV--ADDDIVKLVDTFPG 330 (351)
Q Consensus 295 i~-~-P~~e~R~~Il~~~~~~~~~--~~~~l~~l~~gf~g 330 (351)
+. + |......+-|+.++..+++ +...+..+++-+.+
T Consensus 463 i~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 463 IAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN 502 (877)
T ss_pred EEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc
Confidence 44 3 5555555667777766644 45667777765543
No 86
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=1.2e-11 Score=129.25 Aligned_cols=157 Identities=13% Similarity=0.177 Sum_probs=100.9
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc------------------------cEEeccCccccCC
Q 018745 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGN 189 (351)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~------------------------~i~vs~s~l~s~~ 189 (351)
....++++. ..+.+..+||+||+|+|||++|+++|+.+++. ++.++++.
T Consensus 24 v~~L~~aI~--~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs----- 96 (702)
T PRK14960 24 SRALSSALE--RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS----- 96 (702)
T ss_pred HHHHHHHHH--cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc-----
Confidence 334445444 34667899999999999999999999998762 22222210
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCc
Q 018745 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (351)
Q Consensus 190 ~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v 269 (351)
......+|++...+.-.-..++..|+||||+|.+... ....|+..++ .....+
T Consensus 97 -~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~NALLKtLE-------------EPP~~v 149 (702)
T PRK14960 97 -RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------SFNALLKTLE-------------EPPEHV 149 (702)
T ss_pred -cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------HHHHHHHHHh-------------cCCCCc
Confidence 1123456665554421112456789999999865321 2345666666 234567
Q ss_pred eEEEEeCCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCC--HHHHHHHhc
Q 018745 270 PIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKLVD 326 (351)
Q Consensus 270 ~II~TTN~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~--~~~l~~l~~ 326 (351)
.+|++|+++..+.++++. |+.++-. -++.++..+.++.++..+++. .+.+..++.
T Consensus 150 ~FILaTtd~~kIp~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~ 207 (702)
T PRK14960 150 KFLFATTDPQKLPITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAE 207 (702)
T ss_pred EEEEEECChHhhhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 888999999999888874 5544333 388888888888888766544 444444443
No 87
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.33 E-value=5.5e-12 Score=115.50 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=95.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
..+..++|+||+|||||++|+++++++ +.+++.+++..+.... ...+.. .....+|+|||+|.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~------~~~~~lLvIDdi~~ 101 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEG------LEQADLVCLDDVEA 101 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhh------cccCCEEEEeChhh
Confidence 456799999999999999999999887 4667777776553211 122221 22346999999997
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCC-CCCCc---chhccCCcceEEEeC--
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTLY---APLIRDGRMEKFYWA-- 297 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~-~~~Ld---~aLlR~gRfd~~i~~-- 297 (351)
+..... . ...|..+++ .. . ..+..+|+|+|. +..++ +.|.++..+...+.+
T Consensus 102 l~~~~~-------~----~~~L~~~l~--------~~---~-~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~ 158 (226)
T TIGR03420 102 IAGQPE-------W----QEALFHLYN--------RV---R-EAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPP 158 (226)
T ss_pred hcCChH-------H----HHHHHHHHH--------HH---H-HcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCC
Confidence 654311 0 112333333 11 0 112357777774 33332 556643333456665
Q ss_pred CCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCccccchh
Q 018745 298 PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIGKFPVP 339 (351)
Q Consensus 298 P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dldf~gal 339 (351)
|+.+++..+++...... .++.+.+..++..++|.--+...+|
T Consensus 159 l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 159 LSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 77888999988766433 5667888888887776655554443
No 88
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.31 E-value=2e-11 Score=118.20 Aligned_cols=151 Identities=16% Similarity=0.199 Sum_probs=90.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC-----CccEEeccCccccCCC-------------CC-------hHHHHHHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNA-------------GE-------PAKLIRQRYREAA 205 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg-----~~~i~vs~s~l~s~~~-------------Ge-------~~~~ir~~f~~A~ 205 (351)
.++||||||||||++|+++++++. .+++.+++.++..... +. ....++.+.....
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 689999999999999999999984 3456777665432110 00 0112222222221
Q ss_pred HHHH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcch
Q 018745 206 DIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (351)
Q Consensus 206 ~~~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~a 284 (351)
.... ...+.+|||||+|.+... ....|..++++ ......+|++|+.+..+.++
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~~le~-------------~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED-------------AQQALRRIMEQ-------------YSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHHHHHh-------------ccCCCeEEEEeCChhhCchh
Confidence 1100 234569999999865321 12234444441 12234567777777788888
Q ss_pred hccCCcceEEEeCCCHHHHHHHHHHhhcCCC--CCHHHHHHHhcCC
Q 018745 285 LIRDGRMEKFYWAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTF 328 (351)
Q Consensus 285 LlR~gRfd~~i~~P~~e~R~~Il~~~~~~~~--~~~~~l~~l~~gf 328 (351)
+..++. ...+..|+.++..++++.++...+ ++.+.+..++...
T Consensus 172 L~sr~~-~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 172 IRSRCL-PLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA 216 (337)
T ss_pred hcCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 875432 222334899999999988887665 4466666666554
No 89
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.31 E-value=2.8e-11 Score=114.48 Aligned_cols=138 Identities=18% Similarity=0.165 Sum_probs=93.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
....-.+|||||||.|||+||..||+++|.++-..++..+.. + ..+..++.. -....|||||||.++.
T Consensus 49 ~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-----~-gDlaaiLt~------Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 49 GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-----P-GDLAAILTN------LEEGDVLFIDEIHRLS 116 (332)
T ss_pred CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC-----h-hhHHHHHhc------CCcCCeEEEehhhhcC
Confidence 345568999999999999999999999999999888876632 1 112222211 3456799999998765
Q ss_pred CCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCC--------CCCceEEEEeCCCCCCcchhccCCcceEEEe-
Q 018745 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE--------NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW- 296 (351)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~--------~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~- 296 (351)
.. +.+.|.-.++|- +++-+.+... .+.--+|++|.+...|..||.- ||.....
T Consensus 117 ~~-------------vEE~LYpaMEDf---~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rl 178 (332)
T COG2255 117 PA-------------VEEVLYPAMEDF---RLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRL 178 (332)
T ss_pred hh-------------HHHHhhhhhhhe---eEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeee
Confidence 43 233444444422 2222223222 3444589999999999999985 5555444
Q ss_pred -CCCHHHHHHHHHHhhcC
Q 018745 297 -APTREDRIGVCKGIFRN 313 (351)
Q Consensus 297 -~P~~e~R~~Il~~~~~~ 313 (351)
..+.++..+|+.+-...
T Consensus 179 efY~~~eL~~Iv~r~a~~ 196 (332)
T COG2255 179 EFYTVEELEEIVKRSAKI 196 (332)
T ss_pred ecCCHHHHHHHHHHHHHH
Confidence 59999999997766543
No 90
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=2.7e-11 Score=120.01 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=96.8
Q ss_pred HHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEec--c--------------Cccc--cCCCCChHHHHH
Q 018745 137 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS--A--------------GELE--SGNAGEPAKLIR 198 (351)
Q Consensus 137 ~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs--~--------------s~l~--s~~~Ge~~~~ir 198 (351)
.++.+. ..+.|..+||+||||+|||++|+++|+++.+...... + .++. +.........++
T Consensus 28 l~~~~~--~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir 105 (363)
T PRK14961 28 ISNGLS--LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMR 105 (363)
T ss_pred HHHHHH--cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHH
Confidence 344443 2356788999999999999999999999864311100 0 0010 000001234455
Q ss_pred HHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC
Q 018745 199 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (351)
Q Consensus 199 ~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~ 278 (351)
++...+...-..+...|+||||+|.+.. .....|+..++ .....+.+|++|+++
T Consensus 106 ~i~~~~~~~p~~~~~kviIIDEa~~l~~-------------~a~naLLk~lE-------------e~~~~~~fIl~t~~~ 159 (363)
T PRK14961 106 EILDNIYYSPSKSRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPQHIKFILATTDV 159 (363)
T ss_pred HHHHHHhcCcccCCceEEEEEChhhcCH-------------HHHHHHHHHHh-------------cCCCCeEEEEEcCCh
Confidence 5554431000134557999999986531 11234555555 223456788888889
Q ss_pred CCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCC--CCHHHHHHHhcCCCCCC
Q 018745 279 STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQS 332 (351)
Q Consensus 279 ~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~--~~~~~l~~l~~gf~g~d 332 (351)
+.+.+++.. |+- .+.+ |+.++..++++..++..+ ++.+.+..++. +++.+
T Consensus 160 ~~l~~tI~S--Rc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~-~s~G~ 213 (363)
T PRK14961 160 EKIPKTILS--RCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAY-HAHGS 213 (363)
T ss_pred HhhhHHHHh--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HcCCC
Confidence 999998875 443 3444 889999999988887665 44444444333 34433
No 91
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=1.1e-11 Score=126.07 Aligned_cols=194 Identities=14% Similarity=0.129 Sum_probs=114.1
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCc
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE 184 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~ 184 (351)
+..|+|+|.+.+. . .+.....++.+...++. ....++|||++|+|||+|++++++++ +..++++++.+
T Consensus 109 l~~~tFdnFv~g~----~--n~~A~~aa~~~a~~~~~-~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~ 181 (450)
T PRK14087 109 INENTFENFVIGS----S--NEQAFIAVQTVSKNPGI-SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE 181 (450)
T ss_pred ccccchhcccCCC----c--HHHHHHHHHHHHhCcCc-ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 3458888877542 1 12233445555544443 23469999999999999999999965 45677777766
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc
Q 018745 185 LESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 263 (351)
Q Consensus 185 l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~ 263 (351)
+...+...-.... ..+... .. .....+|+|||++.+.++.. ....|..+++ ..
T Consensus 182 f~~~~~~~l~~~~-~~~~~~---~~~~~~~dvLiIDDiq~l~~k~~-----------~~e~lf~l~N--------~~--- 235 (450)
T PRK14087 182 FARKAVDILQKTH-KEIEQF---KNEICQNDVLIIDDVQFLSYKEK-----------TNEIFFTIFN--------NF--- 235 (450)
T ss_pred HHHHHHHHHHHhh-hHHHHH---HHHhccCCEEEEeccccccCCHH-----------HHHHHHHHHH--------HH---
Confidence 6543321100000 011111 11 24567999999997765422 1223333333 11
Q ss_pred CCCCCceEEEEeCCCC----CCcchhccCCcce--EEEeC--CCHHHHHHHHHHhhcCCC----CCHHHHHHHhcCCCCC
Q 018745 264 EENPRVPIIVTGNDFS----TLYAPLIRDGRME--KFYWA--PTREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQ 331 (351)
Q Consensus 264 ~~~~~v~II~TTN~~~----~Ld~aLlR~gRfd--~~i~~--P~~e~R~~Il~~~~~~~~----~~~~~l~~l~~gf~g~ 331 (351)
...+..+|+|+|.+- .+++.|.. ||. ..+.+ |+.++|.+|++..++..+ ++.+.+.-+++.+.|.
T Consensus 236 -~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd 312 (450)
T PRK14087 236 -IENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDD 312 (450)
T ss_pred -HHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCC
Confidence 112236888888653 34566654 554 33333 999999999998887644 6677777777777765
Q ss_pred Cccccchh
Q 018745 332 SIGKFPVP 339 (351)
Q Consensus 332 dldf~gal 339 (351)
.-...++|
T Consensus 313 ~R~L~gaL 320 (450)
T PRK14087 313 VRKIKGSV 320 (450)
T ss_pred HHHHHHHH
Confidence 44444544
No 92
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=6.4e-11 Score=127.20 Aligned_cols=168 Identities=13% Similarity=0.174 Sum_probs=102.6
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccE-E-eccC----
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-M-MSAG---- 183 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i-~-vs~s---- 183 (351)
.|.-+|++++|- ..+.+..++++.. .+.|..+|||||||||||++|+++|+.+++.-. . ..+.
T Consensus 10 yRP~tFddIIGQ---------e~Iv~~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 10 WRPATFEQMVGQ---------SHVLHALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred hCCCCHHHhcCc---------HHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 344456666664 2233344555543 366888999999999999999999999976411 0 0000
Q ss_pred ----------ccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcC
Q 018745 184 ----------ELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 251 (351)
Q Consensus 184 ----------~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~ 251 (351)
.+. +.-.......+|++...+...-..++..|+||||+|.+-. .....|+..++
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-------------eAqNALLKtLE- 144 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-------------SSFNALLKTLE- 144 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-------------HHHHHHHHHHh-
Confidence 000 0000012344666555442111245678999999987631 23345666666
Q ss_pred CccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCCC
Q 018745 252 PTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA 317 (351)
Q Consensus 252 ~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~~ 317 (351)
.....+.+|++|+++..|.+.++. |+-+ |.+ ++.++..+.++.++..+++.
T Consensus 145 ------------EPP~~vrFILaTTe~~kLl~TIlS--RCq~-f~fkpLs~eEI~~~L~~il~~EgI~ 197 (944)
T PRK14949 145 ------------EPPEHVKFLLATTDPQKLPVTVLS--RCLQ-FNLKSLTQDEIGTQLNHILTQEQLP 197 (944)
T ss_pred ------------ccCCCeEEEEECCCchhchHHHHH--hheE-EeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 335567788888999999888775 5533 343 77888888887777655554
No 93
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.3e-11 Score=118.19 Aligned_cols=137 Identities=20% Similarity=0.277 Sum_probs=96.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcc-ccCCCCChHHHHHHHHHHHHHH-HHhCCceEEEecccccccCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL-ESGNAGEPAKLIRQRYREAADI-IKKGKMCCLMINDLDAGAGR 227 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l-~s~~~Ge~~~~ir~~f~~A~~~-~~~~~p~IL~IDEID~l~~~ 227 (351)
..|||.||.|||||+||+.+|+.++++|-+-++..| ..+|+|+...++-...-.|.+. +.+....|++|||||+++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 479999999999999999999999999999999998 5689999877654444443221 22556789999999999987
Q ss_pred CCC-CccchhhhHHHHHHHHHhhcCCccccCCCCcccCC--------CCCceEEEEeCCCCCCcchhcc
Q 018745 228 MGG-TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE--------NPRVPIIVTGNDFSTLYAPLIR 287 (351)
Q Consensus 228 r~~-~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~--------~~~v~II~TTN~~~~Ld~aLlR 287 (351)
..+ +-...+...-++++|+.+++.......+.-.++.+ ..++++||.. .+..|+.-+.+
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgG-AF~GlekiI~~ 245 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGG-AFAGLEKIIKK 245 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEecc-ccccHHHHHHH
Confidence 642 33467778889999999998655444444333333 3444455443 24445444443
No 94
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.29 E-value=1.5e-11 Score=113.32 Aligned_cols=180 Identities=16% Similarity=0.199 Sum_probs=105.2
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccc
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 186 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~ 186 (351)
...|+|++...+. . ......++++.. +...+..++|+||+|||||+||+++++++ +..++.+++..+.
T Consensus 12 ~~~~~~d~f~~~~--~-----~~~~~~l~~~~~--~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 12 PPPPTFDNFVAGE--N-----AELVARLRELAA--GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CChhhhcccccCC--c-----HHHHHHHHHHHh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 3456777766331 1 112234444433 23445789999999999999999999976 5677777765432
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCC
Q 018745 187 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 266 (351)
Q Consensus 187 s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~ 266 (351)
. .+. ......+|+|||+|.+.... ...|..+++ .. ...
T Consensus 83 ~------------~~~------~~~~~~~liiDdi~~l~~~~-------------~~~L~~~~~--------~~---~~~ 120 (227)
T PRK08903 83 L------------AFD------FDPEAELYAVDDVERLDDAQ-------------QIALFNLFN--------RV---RAH 120 (227)
T ss_pred H------------HHh------hcccCCEEEEeChhhcCchH-------------HHHHHHHHH--------HH---HHc
Confidence 1 111 12346799999998753211 122333333 11 112
Q ss_pred CCceEEEEeCCCC---CCcchhccCCcc--eEEEeC--CCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCccccc
Q 018745 267 PRVPIIVTGNDFS---TLYAPLIRDGRM--EKFYWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIGKFP 337 (351)
Q Consensus 267 ~~v~II~TTN~~~---~Ld~aLlR~gRf--d~~i~~--P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dldf~g 337 (351)
....+|+|++.+. .+.+.|.. || ...+.+ |+.+++.+++..+.... .++.+.+..+...++|.-..+..
T Consensus 121 ~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~ 198 (227)
T PRK08903 121 GQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMA 198 (227)
T ss_pred CCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHH
Confidence 2223555555332 23444542 44 345555 77777888888776544 56678888888877776666655
Q ss_pred hhhcc
Q 018745 338 VPLMM 342 (351)
Q Consensus 338 alr~~ 342 (351)
+|..+
T Consensus 199 ~l~~l 203 (227)
T PRK08903 199 LLDAL 203 (227)
T ss_pred HHHHH
Confidence 55543
No 95
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.29 E-value=3.7e-11 Score=99.76 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=77.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
....++|+||||||||++++.+++.+ +.+++.++................. .............+.+|+|||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-hHhHHHHhhccCCCeEEEEeChhhh
Confidence 45689999999999999999999998 8888888877654432211100000 0011111113567899999999865
Q ss_pred cCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC--CCcchhccCCcceEEEeCC
Q 018745 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYWAP 298 (351)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~--~Ld~aLlR~gRfd~~i~~P 298 (351)
.. .....++.++. ..... .....++.+|++||... .+++.+. .||+..+.+|
T Consensus 97 ~~-------------~~~~~~~~~i~-----~~~~~--~~~~~~~~ii~~~~~~~~~~~~~~~~--~r~~~~i~~~ 150 (151)
T cd00009 97 SR-------------GAQNALLRVLE-----TLNDL--RIDRENVRVIGATNRPLLGDLDRALY--DRLDIRIVIP 150 (151)
T ss_pred hH-------------HHHHHHHHHHH-----hcCce--eccCCCeEEEEecCccccCCcChhHH--hhhccEeecC
Confidence 11 01122233333 00000 01246789999999887 6777665 4787666654
No 96
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.26 E-value=3.1e-12 Score=114.06 Aligned_cols=126 Identities=12% Similarity=0.129 Sum_probs=85.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC----ccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~----~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
..+||.||+|||||.+|+++|+.+.. +++.++++++... ++....+..+...+...+......||||||||+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 57999999999999999999999996 8999999988651 11112233334333222222333499999999998
Q ss_pred CCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCC
Q 018745 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (351)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~L 281 (351)
.+. .....+....++..|++++++-.-. +.........++++|+|+|--...
T Consensus 82 ~~~--~~~~~v~~~~V~~~LL~~le~g~~~--d~~g~~vd~~n~ifI~Tsn~~~~~ 133 (171)
T PF07724_consen 82 PSN--SGGADVSGEGVQNSLLQLLEGGTLT--DSYGRTVDTSNIIFIMTSNFGAEE 133 (171)
T ss_dssp HTT--TTCSHHHHHHHHHHHHHHHHHSEEE--ETTCCEEEGTTEEEEEEESSSTHH
T ss_pred ccc--cccchhhHHHHHHHHHHHhccccee--cccceEEEeCCceEEEecccccch
Confidence 763 3456777778889999999832211 111123456889999999976543
No 97
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.1e-10 Score=120.08 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=98.1
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEecc--------------------Cccc--cCCCCChHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA--------------------GELE--SGNAGEPAKLIRQRYR 202 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~--------------------s~l~--s~~~Ge~~~~ir~~f~ 202 (351)
..+.|..+||+||||||||++|+++|+.+++....... .++. +.........++++..
T Consensus 39 ~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie 118 (507)
T PRK06645 39 NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIE 118 (507)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHH
Confidence 34678899999999999999999999998763210000 0000 0001123456777776
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCc
Q 018745 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (351)
Q Consensus 203 ~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld 282 (351)
.+...-..+...|+||||+|.+.. .....|+..++ .....+.+|++|+.++.++
T Consensus 119 ~a~~~P~~~~~KVvIIDEa~~Ls~-------------~a~naLLk~LE-------------epp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 119 SAEYKPLQGKHKIFIIDEVHMLSK-------------GAFNALLKTLE-------------EPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred HHHhccccCCcEEEEEEChhhcCH-------------HHHHHHHHHHh-------------hcCCCEEEEEEeCChHHhh
Confidence 662111145677999999986531 11234555555 2345667788888899999
Q ss_pred chhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCC--CHHHHHHHhcC
Q 018745 283 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNV--ADDDIVKLVDT 327 (351)
Q Consensus 283 ~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~--~~~~l~~l~~g 327 (351)
++++. |+- .+.+ ++.++..++++.+++.+++ +.+.+..++..
T Consensus 173 ~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~ 218 (507)
T PRK06645 173 ATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYK 218 (507)
T ss_pred HHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99876 443 3443 8999999999988877665 45555555543
No 98
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.26 E-value=2.3e-12 Score=109.66 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=72.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccC--CCCChH-HHHHHHHHHHHHHHH-hCCceEEEecccccccC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPA-KLIRQRYREAADIIK-KGKMCCLMINDLDAGAG 226 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~--~~Ge~~-~~ir~~f~~A~~~~~-~~~p~IL~IDEID~l~~ 226 (351)
.|+|+||||||||++|+.+|+.++.+++.+..+..... ..|... ..-...|... .+.+ ...+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~-~l~~a~~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDG-PLVRAMRKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE--CCCTTHHEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccc-cccccccceeEEEECCcccCC-
Confidence 48999999999999999999999999988877653210 000000 0000000000 0000 1268899999997432
Q ss_pred CCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCC------CceEEEEeCCCC----CCcchhcc
Q 018745 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP------RVPIIVTGNDFS----TLYAPLIR 287 (351)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~------~v~II~TTN~~~----~Ld~aLlR 287 (351)
..+...|+.++++-............... +..+|+|+|..+ .+++||+|
T Consensus 79 ------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~ 137 (139)
T PF07728_consen 79 ------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD 137 (139)
T ss_dssp ------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT
T ss_pred ------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh
Confidence 34556677777754332222211111112 488999999999 99999998
No 99
>PRK08727 hypothetical protein; Validated
Probab=99.25 E-value=4.1e-11 Score=111.68 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=90.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
..++||||+|||||+|++++|+++ +..+++++..++. ..+.+.+.. ..+..+|+|||+|.+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEA------LEGRSLVALDGLESIAG 107 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHH------HhcCCEEEEeCcccccC
Confidence 459999999999999999998775 5555566543321 112222222 24557999999997765
Q ss_pred CCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCC-CCCC---cchhccCCcc--eEEEeC--C
Q 018745 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTL---YAPLIRDGRM--EKFYWA--P 298 (351)
Q Consensus 227 ~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~-~~~L---d~aLlR~gRf--d~~i~~--P 298 (351)
... . ...+.++++ .. ...+..+|+|+|. |..+ +++|.+ || ...+.+ |
T Consensus 108 ~~~-------~----~~~lf~l~n--------~~----~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~ 162 (233)
T PRK08727 108 QRE-------D----EVALFDFHN--------RA----RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVL 162 (233)
T ss_pred ChH-------H----HHHHHHHHH--------HH----HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCC
Confidence 432 1 112233333 11 1234568888774 4444 678876 43 233444 9
Q ss_pred CHHHHHHHHHHhhcC--CCCCHHHHHHHhcCCCCC
Q 018745 299 TREDRIGVCKGIFRN--DNVADDDIVKLVDTFPGQ 331 (351)
Q Consensus 299 ~~e~R~~Il~~~~~~--~~~~~~~l~~l~~gf~g~ 331 (351)
+.+++.+|++..... -.++.+.+..+++.+.|.
T Consensus 163 ~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 163 DDVARAAVLRERAQRRGLALDEAAIDWLLTHGERE 197 (233)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCC
Confidence 999999999986643 466677788888777654
No 100
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1e-10 Score=123.02 Aligned_cols=161 Identities=13% Similarity=0.170 Sum_probs=103.0
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCcc-------------
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP------------- 177 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~------------- 177 (351)
|.-+|++++|- ..+....++.+. ..+.+..+|||||+|||||++|+++|+.+++..
T Consensus 11 RP~~f~divGQ---------e~vv~~L~~~l~--~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQ---------EHVLTALANALD--LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCc---------HHHHHHHHHHHH--cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 33456666664 222333444443 335688899999999999999999999987631
Q ss_pred -----------EEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHH
Q 018745 178 -----------IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 246 (351)
Q Consensus 178 -----------i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~ 246 (351)
+.+++.. ......+|++...+...-..++..|+||||+|.+.. .....|+
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-------------~a~NALL 140 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFNALL 140 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-------------HHHHHHH
Confidence 1121110 012344666655542111256678999999986532 1234566
Q ss_pred HhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCCC
Q 018745 247 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA 317 (351)
Q Consensus 247 ~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~~ 317 (351)
..++ +....+.+|++|++++.|.+.++. |+-. |.+ ++.++-.+.++.++..+++.
T Consensus 141 KtLE-------------EPp~~v~FIL~Tt~~~kLl~TI~S--RC~~-~~f~~Ls~~ei~~~L~~il~~e~i~ 197 (647)
T PRK07994 141 KTLE-------------EPPEHVKFLLATTDPQKLPVTILS--RCLQ-FHLKALDVEQIRQQLEHILQAEQIP 197 (647)
T ss_pred HHHH-------------cCCCCeEEEEecCCccccchHHHh--hheE-eeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 6666 345667888889999999988775 5533 443 88888888888887665554
No 101
>PRK06620 hypothetical protein; Validated
Probab=99.25 E-value=2.1e-11 Score=112.46 Aligned_cols=173 Identities=15% Similarity=0.143 Sum_probs=99.0
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCC-CcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCC
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKV-PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~-p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~ 189 (351)
..|+|+|.+.+. . .......++++...++..+ -..++||||||||||+|++++|+..+..+ ++....
T Consensus 11 ~~~tfd~Fvvg~----~--N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~~~~~---- 78 (214)
T PRK06620 11 SKYHPDEFIVSS----S--NDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI--IKDIFF---- 78 (214)
T ss_pred CCCCchhhEecc----c--HHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE--cchhhh----
Confidence 356677766541 0 1223444555543333322 16899999999999999999999876522 221100
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCc
Q 018745 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (351)
Q Consensus 190 ~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v 269 (351)
..+.+ ....+|+|||||.. . .. .|.++++ .+ .+..+.
T Consensus 79 -------~~~~~---------~~~d~lliDdi~~~----~--------~~----~lf~l~N--------~~---~e~g~~ 115 (214)
T PRK06620 79 -------NEEIL---------EKYNAFIIEDIENW----Q--------EP----ALLHIFN--------II---NEKQKY 115 (214)
T ss_pred -------chhHH---------hcCCEEEEeccccc----h--------HH----HHHHHHH--------HH---HhcCCE
Confidence 00111 23368999999832 1 11 2333333 11 122334
Q ss_pred eEEEEeCCCCC--CcchhccCCcce----EEEeCCCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCccccchhhc
Q 018745 270 PIIVTGNDFST--LYAPLIRDGRME----KFYWAPTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIGKFPVPLM 341 (351)
Q Consensus 270 ~II~TTN~~~~--Ld~aLlR~gRfd----~~i~~P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dldf~galr~ 341 (351)
.+|.++..|.. + |+|+ .|+. ..+..|+.+.+.+++++.+... .++.+.+.-++..+++.--...++|..
T Consensus 116 ilits~~~p~~l~l-~~L~--SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~ 192 (214)
T PRK06620 116 LLLTSSDKSRNFTL-PDLS--SRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILEN 192 (214)
T ss_pred EEEEcCCCccccch-HHHH--HHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 45555444443 4 5565 3665 3333499999999998887654 466777777777777765445555544
No 102
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.25 E-value=1.3e-10 Score=114.08 Aligned_cols=144 Identities=15% Similarity=0.217 Sum_probs=85.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC---------CccEEeccCccccC----------CC--CC----hHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG----------NA--GE----PAKLIRQRY 201 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg---------~~~i~vs~s~l~s~----------~~--Ge----~~~~ir~~f 201 (351)
..|..++|+||||||||++++++++++. +.++.+++....+. .. |. ......+.+
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 4566899999999999999999998763 45677776543211 00 00 000011122
Q ss_pred HHHHHHHH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-
Q 018745 202 REAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS- 279 (351)
Q Consensus 202 ~~A~~~~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~- 279 (351)
....+.+. ...+.||+|||+|.+..... ..+ ..|+.+.+ .......++.+|+++|+++
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~~---------~~L-~~l~~~~~----------~~~~~~~~v~lI~i~n~~~~ 177 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDDD---------DLL-YQLSRARS----------NGDLDNAKVGVIGISNDLKF 177 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCCc---------HHH-HhHhcccc----------ccCCCCCeEEEEEEECCcch
Confidence 22222223 45688999999999873211 111 12222211 0112246788999999886
Q ss_pred --CCcchhccCCcce-EEEe--CCCHHHHHHHHHHhhc
Q 018745 280 --TLYAPLIRDGRME-KFYW--APTREDRIGVCKGIFR 312 (351)
Q Consensus 280 --~Ld~aLlR~gRfd-~~i~--~P~~e~R~~Il~~~~~ 312 (351)
.+++.+.+ ||. ..+. -++.++..+|++..+.
T Consensus 178 ~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 178 RENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred HhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 57777765 443 3344 3889999999887764
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=6.6e-11 Score=116.96 Aligned_cols=153 Identities=12% Similarity=0.139 Sum_probs=94.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCc----c--ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEec
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE----L--ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIN 219 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~----l--~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~ID 219 (351)
.+.|..+|||||||+|||++|+++|+.+..+........ + .+.........+++++..+...-..+.+.||+||
T Consensus 36 ~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviID 115 (367)
T PRK14970 36 NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIID 115 (367)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEe
Confidence 356789999999999999999999999865221110000 0 0111112234566667665211113456799999
Q ss_pred ccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEe--C
Q 018745 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--A 297 (351)
Q Consensus 220 EID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~--~ 297 (351)
|+|.+... ....|+..+++ ......+|++|+....+.+++.++++ .+. .
T Consensus 116 E~~~l~~~-------------~~~~ll~~le~-------------~~~~~~~Il~~~~~~kl~~~l~sr~~---~v~~~~ 166 (367)
T PRK14970 116 EVHMLSSA-------------AFNAFLKTLEE-------------PPAHAIFILATTEKHKIIPTILSRCQ---IFDFKR 166 (367)
T ss_pred ChhhcCHH-------------HHHHHHHHHhC-------------CCCceEEEEEeCCcccCCHHHHhcce---eEecCC
Confidence 99865321 12344555552 22345677778888999999887554 244 3
Q ss_pred CCHHHHHHHHHHhhcCCC--CCHHHHHHHhcC
Q 018745 298 PTREDRIGVCKGIFRNDN--VADDDIVKLVDT 327 (351)
Q Consensus 298 P~~e~R~~Il~~~~~~~~--~~~~~l~~l~~g 327 (351)
|+.++...++...+...+ ++.+.+..+++.
T Consensus 167 ~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~ 198 (367)
T PRK14970 167 ITIKDIKEHLAGIAVKEGIKFEDDALHIIAQK 198 (367)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 888888888888776665 455555555553
No 104
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.24 E-value=3.7e-11 Score=116.87 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=95.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccC--CCCChHHHH----------HHHHHHHHHHHHhCCceEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPAKLI----------RQRYREAADIIKKGKMCCL 216 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~--~~Ge~~~~i----------r~~f~~A~~~~~~~~p~IL 216 (351)
.+.|||.||||||||++++.+|+.++++++.++++...+. +.|...-.+ ...+..| ...+++|
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A-----~~~g~il 138 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWA-----LQHNVAL 138 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhH-----HhCCeEE
Confidence 4579999999999999999999999999999988766543 445321111 1112223 3467889
Q ss_pred EecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc-CCCCCceEEEEeCCCC------------CCcc
Q 018745 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFS------------TLYA 283 (351)
Q Consensus 217 ~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~-~~~~~v~II~TTN~~~------------~Ld~ 283 (351)
++||+|....+ +...|..++++...+.+.+.... ...+...+|+|+|..+ .+++
T Consensus 139 llDEin~a~p~-------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 139 CFDEYDAGRPD-------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred EechhhccCHH-------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 99999865321 23445556664323333332111 2345677999999865 4577
Q ss_pred hhccCCcceEEEeC--CCHHHHHHHHHHhh
Q 018745 284 PLIRDGRMEKFYWA--PTREDRIGVCKGIF 311 (351)
Q Consensus 284 aLlR~gRfd~~i~~--P~~e~R~~Il~~~~ 311 (351)
|++- ||-..+.+ |+.++-.+|+....
T Consensus 206 A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 206 AQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 8874 78776665 99999999987664
No 105
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=6.2e-11 Score=124.83 Aligned_cols=164 Identities=15% Similarity=0.189 Sum_probs=101.9
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE-------------eccC---ccc--cCCCCChHH
Q 018745 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-------------MSAG---ELE--SGNAGEPAK 195 (351)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~-------------vs~s---~l~--s~~~Ge~~~ 195 (351)
....++++. ..+.|.++||+||+|||||++|+++|+.+++.-.. +..+ ++. +........
T Consensus 25 v~~L~~ai~--~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd 102 (709)
T PRK08691 25 VKALQNALD--EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGID 102 (709)
T ss_pred HHHHHHHHH--cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHH
Confidence 344455554 34668899999999999999999999998653110 0000 010 001112334
Q ss_pred HHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEe
Q 018745 196 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG 275 (351)
Q Consensus 196 ~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TT 275 (351)
.++++...+.-.-..++..|+||||+|.+.. .....|+..++ .....+.+|++|
T Consensus 103 ~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-------------~A~NALLKtLE-------------EPp~~v~fILaT 156 (709)
T PRK08691 103 NIREVLENAQYAPTAGKYKVYIIDEVHMLSK-------------SAFNAMLKTLE-------------EPPEHVKFILAT 156 (709)
T ss_pred HHHHHHHHHHhhhhhCCcEEEEEECccccCH-------------HHHHHHHHHHH-------------hCCCCcEEEEEe
Confidence 5777766542111245668999999986431 11234555666 234567889999
Q ss_pred CCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCC--HHHHHHHhcC
Q 018745 276 NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKLVDT 327 (351)
Q Consensus 276 N~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~--~~~l~~l~~g 327 (351)
|++..+.+.++ +|+-.+-. -++.++-.+.++.++..+++. .+.+..++..
T Consensus 157 td~~kL~~TIr--SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~ 209 (709)
T PRK08691 157 TDPHKVPVTVL--SRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRA 209 (709)
T ss_pred CCccccchHHH--HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 99999998877 46643222 388888888898888877654 4444444433
No 106
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=4.4e-11 Score=123.34 Aligned_cols=171 Identities=15% Similarity=0.200 Sum_probs=104.9
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc---------------
Q 018745 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------- 176 (351)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~--------------- 176 (351)
.-+|++++|- ..+....++++.. .+.|..+|||||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGq---------~~v~~~L~~~~~~--~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 12 PRCFQEVIGQ---------APVVRALSNALDQ--QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCCHHHhcCC---------HHHHHHHHHHHHh--CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 3345666654 2233444555543 3567889999999999999999999998753
Q ss_pred ---------cEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHH
Q 018745 177 ---------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN 247 (351)
Q Consensus 177 ---------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~ 247 (351)
++.++++ .......+|++...+.-.-..++..|+||||+|.+... ....|+.
T Consensus 81 ~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a~naLLk 141 (509)
T PRK14958 81 EIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------SFNALLK 141 (509)
T ss_pred HHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------HHHHHHH
Confidence 2222221 01223446665554411111456679999999976421 1335566
Q ss_pred hhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCC--HHHHHHH
Q 018745 248 IADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKL 324 (351)
Q Consensus 248 lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~--~~~l~~l 324 (351)
.++ .....+.+|++|++++.+.+.++. |+-.+-. -++.++-.+.++.++..+++. .+.+..+
T Consensus 142 ~LE-------------epp~~~~fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~i 206 (509)
T PRK14958 142 TLE-------------EPPSHVKFILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLL 206 (509)
T ss_pred HHh-------------ccCCCeEEEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 666 234567788888999999988765 4433222 267777777777777666554 4444444
Q ss_pred hcC
Q 018745 325 VDT 327 (351)
Q Consensus 325 ~~g 327 (351)
+..
T Consensus 207 a~~ 209 (509)
T PRK14958 207 ARA 209 (509)
T ss_pred HHH
Confidence 433
No 107
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.24 E-value=3.8e-11 Score=114.56 Aligned_cols=175 Identities=20% Similarity=0.340 Sum_probs=107.7
Q ss_pred CCchhHHH----HHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc------cEEeccCccccCCCCC
Q 018745 123 YIAPAFMD----KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAGE 192 (351)
Q Consensus 123 ~i~~~~~d----~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~------~i~vs~s~l~s~~~Ge 192 (351)
|.|+.|-| ..++.+.+|-+.. ..-..+|||||||||||+.|++.|+++..+ +...+++.-. |.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder----Gi 102 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER----GI 102 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc----cc
Confidence 44555544 3344555555544 223379999999999999999999998662 1222222211 21
Q ss_pred hHHHHHH---HHHHHHHHHH--hCC----ceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc
Q 018745 193 PAKLIRQ---RYREAADIIK--KGK----MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 263 (351)
Q Consensus 193 ~~~~ir~---~f~~A~~~~~--~~~----p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~ 263 (351)
+ .++. -|........ .+. +-|++|||.|.+... .+.+|...++
T Consensus 103 s--vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE------------- 154 (346)
T KOG0989|consen 103 S--VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTME------------- 154 (346)
T ss_pred c--chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHh-------------
Confidence 1 1111 1222211111 112 259999999976532 3455666666
Q ss_pred CCCCCceEEEEeCCCCCCcchhccCCcceEEEeC-CCHHHHHHHHHHhhcCCCCC-HHHHHHHhcCCCCCCcc
Q 018745 264 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPGQSIG 334 (351)
Q Consensus 264 ~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~-P~~e~R~~Il~~~~~~~~~~-~~~l~~l~~gf~g~dld 334 (351)
.....+.+|..||..+.|..++.. |+.++..- ...+.....++.+...++++ .++..+++...++.||.
T Consensus 155 ~~s~~trFiLIcnylsrii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 155 DFSRTTRFILICNYLSRIIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLR 225 (346)
T ss_pred ccccceEEEEEcCChhhCChHHHh--hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHH
Confidence 335667889999999999999985 78877765 44445667788888888777 33455566666776664
No 108
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.24 E-value=1.3e-10 Score=124.89 Aligned_cols=142 Identities=16% Similarity=0.191 Sum_probs=94.9
Q ss_pred CCc-EEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccC------------CCCChHHHHHHHHHHHHHHHHhCCce
Q 018745 148 VPL-ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKKGKMC 214 (351)
Q Consensus 148 ~p~-glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~------------~~Ge~~~~ir~~f~~A~~~~~~~~p~ 214 (351)
.|. .+||+||+|||||++|+++|+.++.+++.++.+++.+. |.|... ...+ ..+ ++....+
T Consensus 482 ~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~--~~~l-~~~---~~~~p~~ 555 (731)
T TIGR02639 482 KPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ--GGLL-TEA---VRKHPHC 555 (731)
T ss_pred CCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch--hhHH-HHH---HHhCCCe
Confidence 354 48999999999999999999999999999988876432 222111 1111 121 2456679
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC---------------
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--------------- 279 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~--------------- 279 (351)
||+|||+|.+.. .+...|++++++-.. .+.........+..+|+|||...
T Consensus 556 VvllDEieka~~-------------~~~~~Ll~~ld~g~~--~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~ 620 (731)
T TIGR02639 556 VLLLDEIEKAHP-------------DIYNILLQVMDYATL--TDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENV 620 (731)
T ss_pred EEEEechhhcCH-------------HHHHHHHHhhccCee--ecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhh
Confidence 999999986532 245677888873211 01111123456788999998742
Q ss_pred ----------CCcchhccCCcceEEEeC--CCHHHHHHHHHHhhc
Q 018745 280 ----------TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR 312 (351)
Q Consensus 280 ----------~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~ 312 (351)
.+.|+++ +|+|..+.. .+.++..+|++..+.
T Consensus 621 ~~~~~~~~~~~f~pef~--~Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 621 ESKSDKAIKKLFSPEFR--NRLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred HHHHHHHHHhhcChHHH--hcCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 2455665 699987775 888899999766653
No 109
>PRK08116 hypothetical protein; Validated
Probab=99.24 E-value=2.2e-11 Score=115.97 Aligned_cols=136 Identities=21% Similarity=0.340 Sum_probs=79.9
Q ss_pred ccccccccccccccCCCCCchhHHHHHHHHHHHHhhhCC--CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEe
Q 018745 106 ISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP--NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMM 180 (351)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~--~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~v 180 (351)
+...++.++|+|...+ +. .......+++|+... ....+.|++|||++|||||+||.+||+++ +.+++.+
T Consensus 75 i~~~~~~~tFdnf~~~----~~--~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 75 LDEKFRNSTFENFLFD----KG--SEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred CCHHHHhcchhcccCC----hH--HHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3456677788876532 11 122333444444311 11335689999999999999999999986 7788888
Q ss_pred ccCccccCCCCChHHHHHHHHHH-----HHHHHH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCcc
Q 018745 181 SAGELESGNAGEPAKLIRQRYRE-----AADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 254 (351)
Q Consensus 181 s~s~l~s~~~Ge~~~~ir~~f~~-----A~~~~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~ 254 (351)
+..++.+.+ ...|.. ..+.+. .....+|+|||+..... +......|.++++
T Consensus 149 ~~~~ll~~i--------~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~-----------t~~~~~~l~~iin---- 205 (268)
T PRK08116 149 NFPQLLNRI--------KSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD-----------TEWAREKVYNIID---- 205 (268)
T ss_pred EHHHHHHHH--------HHHHhccccccHHHHHHHhcCCCEEEEecccCCCC-----------CHHHHHHHHHHHH----
Confidence 877654321 111110 001112 23456999999953211 1122345666666
Q ss_pred ccCCCCcccCCCCCceEEEEeCCC
Q 018745 255 VQLPGMYNKEENPRVPIIVTGNDF 278 (351)
Q Consensus 255 ~~l~~~~~~~~~~~v~II~TTN~~ 278 (351)
. ....+.|+|+|||..
T Consensus 206 ----~----r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 206 ----S----RYRKGLPTIVTTNLS 221 (268)
T ss_pred ----H----HHHCCCCEEEECCCC
Confidence 2 123556899999975
No 110
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.23 E-value=7.4e-11 Score=126.01 Aligned_cols=143 Identities=18% Similarity=0.239 Sum_probs=93.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEecccccccCCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRM 228 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~IL~IDEID~l~~~r 228 (351)
..++||||||||||++|+++|+.++..++.+++... ..+.+++.+..+.+.+. .....+|||||+|.+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~- 124 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA- 124 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-
Confidence 368999999999999999999999988888776421 12345555555533333 346789999999865321
Q ss_pred CCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEe--CCCCCCcchhccCCcceEEEeC--CCHHHHH
Q 018745 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRI 304 (351)
Q Consensus 229 ~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TT--N~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~ 304 (351)
.+..|+..++ ...+.+|++| |....++++++.+++ .+.+ ++.+++.
T Consensus 125 ------------qQdaLL~~lE---------------~g~IiLI~aTTenp~~~l~~aL~SR~~---v~~l~pLs~edi~ 174 (725)
T PRK13341 125 ------------QQDALLPWVE---------------NGTITLIGATTENPYFEVNKALVSRSR---LFRLKSLSDEDLH 174 (725)
T ss_pred ------------HHHHHHHHhc---------------CceEEEEEecCCChHhhhhhHhhcccc---ceecCCCCHHHHH
Confidence 1223333333 2345566544 334568899887544 2443 8889999
Q ss_pred HHHHHhhc-------CC--CCCHHHHHHHhcCCCC
Q 018745 305 GVCKGIFR-------ND--NVADDDIVKLVDTFPG 330 (351)
Q Consensus 305 ~Il~~~~~-------~~--~~~~~~l~~l~~gf~g 330 (351)
.+++.++. .. .++.+.+..++...+|
T Consensus 175 ~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G 209 (725)
T PRK13341 175 QLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG 209 (725)
T ss_pred HHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC
Confidence 99888775 22 4567777777665544
No 111
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1e-10 Score=122.74 Aligned_cols=177 Identities=11% Similarity=0.162 Sum_probs=106.1
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccE------Ee-cc
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI------MM-SA 182 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i------~v-s~ 182 (351)
.|.-+|++++|. ..++...++++.. .+.|..+|||||+|||||++|+++|+.+++.-- .. .+
T Consensus 10 yRP~~f~dviGQ---------e~vv~~L~~~l~~--~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 10 YRPRSFSEMVGQ---------EHVVQALTNALTQ--QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred HCCCCHHHhcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 344456676664 3344455666553 356889999999999999999999999875210 00 00
Q ss_pred --------------Ccccc--CCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHH
Q 018745 183 --------------GELES--GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 246 (351)
Q Consensus 183 --------------s~l~s--~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~ 246 (351)
.++.. .........+|++...+.-.-..++..|+||||+|.+... ....|+
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-------------a~NaLL 145 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-------------AFNAML 145 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-------------HHHHHH
Confidence 01100 0001123346666555411111345679999999976421 123444
Q ss_pred HhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCCC--HHHHH
Q 018745 247 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVA--DDDIV 322 (351)
Q Consensus 247 ~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~~--~~~l~ 322 (351)
..++ .....+.+|++|++++.+.+.++. |+.. +.+ ++.++..+.++.++..+++. .+.+.
T Consensus 146 KtLE-------------EPP~~~~fIL~Ttd~~kil~TIlS--Rc~~-~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~ 209 (618)
T PRK14951 146 KTLE-------------EPPEYLKFVLATTDPQKVPVTVLS--RCLQ-FNLRPMAPETVLEHLTQVLAAENVPAEPQALR 209 (618)
T ss_pred Hhcc-------------cCCCCeEEEEEECCchhhhHHHHH--hcee-eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5555 234556788888899999888765 5533 343 78888888888888766654 44444
Q ss_pred HHhc
Q 018745 323 KLVD 326 (351)
Q Consensus 323 ~l~~ 326 (351)
.++.
T Consensus 210 ~La~ 213 (618)
T PRK14951 210 LLAR 213 (618)
T ss_pred HHHH
Confidence 4444
No 112
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2.4e-10 Score=117.80 Aligned_cols=146 Identities=12% Similarity=0.180 Sum_probs=92.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCc-----------------------cEEeccCccccCCCCChHHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~-----------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~ 202 (351)
.+.|..+|||||||||||++|+++|+.+.+. ++.+++. .......++++..
T Consensus 33 ~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~------~~~~vd~iR~l~~ 106 (504)
T PRK14963 33 GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAA------SNNSVEDVRDLRE 106 (504)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccc------ccCCHHHHHHHHH
Confidence 3567789999999999999999999998541 2222221 0112345666544
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCc
Q 018745 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (351)
Q Consensus 203 ~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld 282 (351)
.+...-..+.+.||||||+|.+.. .....|+..++ .....+.+|++||.+..+.
T Consensus 107 ~~~~~p~~~~~kVVIIDEad~ls~-------------~a~naLLk~LE-------------ep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 107 KVLLAPLRGGRKVYILDEAHMMSK-------------SAFNALLKTLE-------------EPPEHVIFILATTEPEKMP 160 (504)
T ss_pred HHhhccccCCCeEEEEECccccCH-------------HHHHHHHHHHH-------------hCCCCEEEEEEcCChhhCC
Confidence 442111245678999999985421 11234444454 2234567788889999999
Q ss_pred chhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCC--HHHHHHHh
Q 018745 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKLV 325 (351)
Q Consensus 283 ~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~--~~~l~~l~ 325 (351)
+++.. |+..+-. -|+.++..+.++.++..+++. .+.+..++
T Consensus 161 ~~I~S--Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia 204 (504)
T PRK14963 161 PTILS--RTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVA 204 (504)
T ss_pred hHHhc--ceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 98876 4443222 389999999998888776664 44444433
No 113
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.23 E-value=4.8e-11 Score=116.61 Aligned_cols=148 Identities=15% Similarity=0.200 Sum_probs=94.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCc------------------------cEEeccCccccCCCCChHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 201 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f 201 (351)
.+.|..+|||||||+|||++|+++++.+... ++.+++. .......+++++
T Consensus 33 ~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~ 106 (355)
T TIGR02397 33 GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAA------SNNGVDDIREIL 106 (355)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeecc------ccCCHHHHHHHH
Confidence 4567789999999999999999999997543 1112111 012234566777
Q ss_pred HHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCC
Q 018745 202 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (351)
Q Consensus 202 ~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~L 281 (351)
..+...-..+...|++|||+|.+... ....|+..++ .....+.+|++||+++.+
T Consensus 107 ~~~~~~p~~~~~~vviidea~~l~~~-------------~~~~Ll~~le-------------~~~~~~~lIl~~~~~~~l 160 (355)
T TIGR02397 107 DNVKYAPSSGKYKVYIIDEVHMLSKS-------------AFNALLKTLE-------------EPPEHVVFILATTEPHKI 160 (355)
T ss_pred HHHhcCcccCCceEEEEeChhhcCHH-------------HHHHHHHHHh-------------CCccceeEEEEeCCHHHH
Confidence 66521111345579999999866311 1223444555 223456778888999988
Q ss_pred cchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCC--CCHHHHHHHhcCC
Q 018745 282 YAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLVDTF 328 (351)
Q Consensus 282 d~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~--~~~~~l~~l~~gf 328 (351)
.+++.. |+.. +.. |+.++..++++..++..+ ++.+.+..+++..
T Consensus 161 ~~~l~s--r~~~-~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~ 208 (355)
T TIGR02397 161 PATILS--RCQR-FDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAA 208 (355)
T ss_pred HHHHHh--heeE-EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 888876 4543 343 889999999988887665 4555555555433
No 114
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.23 E-value=1.1e-10 Score=95.64 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=77.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCc---cEEeccCccccC--------------CCCChHHHHHHHHHHHHHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESG--------------NAGEPAKLIRQRYREAADIIKKG 211 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~---~i~vs~s~l~s~--------------~~Ge~~~~ir~~f~~A~~~~~~~ 211 (351)
+..++|+||||||||++++.+|..+... ++.++....... .........+..+..+ +..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA----RKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH----Hhc
Confidence 4579999999999999999999999775 777777654321 1123344555555555 666
Q ss_pred CceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcc
Q 018745 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 291 (351)
Q Consensus 212 ~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRf 291 (351)
.+.+|||||++.+..... ......... .. ............+|+++|......+..+++ |+
T Consensus 78 ~~~viiiDei~~~~~~~~----~~~~~~~~~---~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~ 138 (148)
T smart00382 78 KPDVLILDEITSLLDAEQ----EALLLLLEE---LR-----------LLLLLKSEKNLTVILTTNDEKDLGPALLRR-RF 138 (148)
T ss_pred CCCEEEEECCcccCCHHH----HHHHHhhhh---hH-----------HHHHHHhcCCCEEEEEeCCCccCchhhhhh-cc
Confidence 689999999988765432 000000000 00 000012345678999999744444555554 77
Q ss_pred eEEEeC
Q 018745 292 EKFYWA 297 (351)
Q Consensus 292 d~~i~~ 297 (351)
+..+.+
T Consensus 139 ~~~~~~ 144 (148)
T smart00382 139 DRRIVL 144 (148)
T ss_pred ceEEEe
Confidence 776664
No 115
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.21 E-value=1.4e-10 Score=124.55 Aligned_cols=142 Identities=17% Similarity=0.204 Sum_probs=92.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcccc-----CCCCChHHHH----HHHHHHHHHHHHhCCceEEEecc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-----GNAGEPAKLI----RQRYREAADIIKKGKMCCLMIND 220 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s-----~~~Ge~~~~i----r~~f~~A~~~~~~~~p~IL~IDE 220 (351)
..+||+||||||||++|+++|+.++.+++.++++++.+ .+.|.+...+ ...+..+ ++....+||||||
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~---v~~~p~sVlllDE 565 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA---VIKHPHAVLLLDE 565 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHH---HHhCCCcEEEecc
Confidence 46999999999999999999999999999998887643 1222111000 0112222 2455679999999
Q ss_pred cccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC----------------------
Q 018745 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---------------------- 278 (351)
Q Consensus 221 ID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~---------------------- 278 (351)
||++.. .+...|++++++-... +.........++++|+|||.-
T Consensus 566 ieka~~-------------~v~~~LLq~ld~G~lt--d~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~ 630 (758)
T PRK11034 566 IEKAHP-------------DVFNLLLQVMDNGTLT--DNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAME 630 (758)
T ss_pred HhhhhH-------------HHHHHHHHHHhcCeee--cCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHH
Confidence 997632 2566788888732111 111112345678899999932
Q ss_pred ---CCCcchhccCCcceEEEeC--CCHHHHHHHHHHhh
Q 018745 279 ---STLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF 311 (351)
Q Consensus 279 ---~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~ 311 (351)
..+.|+++ +|+|..+.. .+.++..+|+...+
T Consensus 631 ~~~~~f~pefl--~Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 631 EIKKIFTPEFR--NRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred HHHHhcCHHHH--ccCCEEEEcCCCCHHHHHHHHHHHH
Confidence 12556776 589987775 78888888865544
No 116
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.21 E-value=1.6e-10 Score=114.70 Aligned_cols=144 Identities=15% Similarity=0.230 Sum_probs=85.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh-----CCccEEeccCcccc----------CCCC----ChHHHHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELES----------GNAG----EPAKLIRQRYREAADI 207 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l-----g~~~i~vs~s~l~s----------~~~G----e~~~~ir~~f~~A~~~ 207 (351)
..|..++||||||||||++++.+++++ ++.++.+++....+ ...+ .......+++....+.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY 132 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999887 46677887754321 1111 0000122233333333
Q ss_pred HH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC---CCcc
Q 018745 208 IK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYA 283 (351)
Q Consensus 208 ~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~---~Ld~ 283 (351)
+. ...+.||+|||+|.+....+ ... ...|+.+.+ .. ...++.+|+++|..+ .+++
T Consensus 133 l~~~~~~~viviDE~d~l~~~~~--------~~~-l~~l~~~~~--------~~----~~~~v~vI~i~~~~~~~~~l~~ 191 (394)
T PRK00411 133 LDERDRVLIVALDDINYLFEKEG--------NDV-LYSLLRAHE--------EY----PGARIGVIGISSDLTFLYILDP 191 (394)
T ss_pred HHhcCCEEEEEECCHhHhhccCC--------chH-HHHHHHhhh--------cc----CCCeEEEEEEECCcchhhhcCH
Confidence 33 45678999999998872221 111 122333332 11 123678999999864 4566
Q ss_pred hhccCCcceEEEeC--CCHHHHHHHHHHhhc
Q 018745 284 PLIRDGRMEKFYWA--PTREDRIGVCKGIFR 312 (351)
Q Consensus 284 aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~ 312 (351)
.+..+.+. ..+.+ ++.++..+|++..+.
T Consensus 192 ~~~s~~~~-~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 192 RVKSVFRP-EEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred HHHhcCCc-ceeecCCCCHHHHHHHHHHHHH
Confidence 65543222 23343 788999999877664
No 117
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=2.6e-10 Score=118.27 Aligned_cols=138 Identities=15% Similarity=0.185 Sum_probs=89.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCc------------------------cEEeccCccccCCCCChHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 201 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f 201 (351)
.+.+..+|||||+|+|||++|+++|+.+.+. ++.+++. ... ....++++.
T Consensus 35 ~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa----s~~--gvd~ir~ii 108 (546)
T PRK14957 35 QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA----SRT--GVEETKEIL 108 (546)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc----ccc--CHHHHHHHH
Confidence 3667889999999999999999999988652 1111110 111 123455665
Q ss_pred HHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCC
Q 018745 202 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (351)
Q Consensus 202 ~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~L 281 (351)
..+...-..+...|+||||+|.+.. .....|+..++ .....+.+|++|+++..+
T Consensus 109 ~~~~~~p~~g~~kViIIDEa~~ls~-------------~a~naLLK~LE-------------epp~~v~fIL~Ttd~~ki 162 (546)
T PRK14957 109 DNIQYMPSQGRYKVYLIDEVHMLSK-------------QSFNALLKTLE-------------EPPEYVKFILATTDYHKI 162 (546)
T ss_pred HHHHhhhhcCCcEEEEEechhhccH-------------HHHHHHHHHHh-------------cCCCCceEEEEECChhhh
Confidence 5542222245678999999986532 12345666666 224556778788889999
Q ss_pred cchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCC
Q 018745 282 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (351)
Q Consensus 282 d~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~ 317 (351)
.++++. |+..+-. -++.++..+.++..+..+++.
T Consensus 163 l~tI~S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~ 197 (546)
T PRK14957 163 PVTILS--RCIQLHLKHISQADIKDQLKIILAKENIN 197 (546)
T ss_pred hhhHHH--heeeEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 888764 5533222 388888888888877666554
No 118
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=1.4e-10 Score=118.83 Aligned_cols=159 Identities=15% Similarity=0.255 Sum_probs=101.9
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc------------------------cEEeccCccccCC
Q 018745 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGN 189 (351)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~------------------------~i~vs~s~l~s~~ 189 (351)
....++.+. ..+.|..+||+||+|+|||++|+.+|+.+.+. ++.++++.
T Consensus 22 v~~L~~a~~--~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas----- 94 (491)
T PRK14964 22 VRILRNAFT--LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS----- 94 (491)
T ss_pred HHHHHHHHH--cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc-----
Confidence 334444444 34668899999999999999999999987432 23333321
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCc
Q 018745 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (351)
Q Consensus 190 ~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v 269 (351)
..+...+|++.+.+...-..+...|+||||+|.+.. .....|+..++ .+.+.+
T Consensus 95 -~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-------------~A~NaLLK~LE-------------ePp~~v 147 (491)
T PRK14964 95 -NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-------------SAFNALLKTLE-------------EPAPHV 147 (491)
T ss_pred -CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-------------HHHHHHHHHHh-------------CCCCCe
Confidence 113355777666652111145678999999986532 12345666666 234567
Q ss_pred eEEEEeCCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCC--HHHHHHHhcCC
Q 018745 270 PIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKLVDTF 328 (351)
Q Consensus 270 ~II~TTN~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~--~~~l~~l~~gf 328 (351)
.+|++|+.++.+.+.++. |+-.+-. -++.++..+.+..++..+++. .+.+..++...
T Consensus 148 ~fIlatte~~Kl~~tI~S--Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s 207 (491)
T PRK14964 148 KFILATTEVKKIPVTIIS--RCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS 207 (491)
T ss_pred EEEEEeCChHHHHHHHHH--hheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 788888889999998875 4433222 388888888888888776544 55555444433
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=2e-10 Score=124.18 Aligned_cols=147 Identities=12% Similarity=0.116 Sum_probs=94.8
Q ss_pred HHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCcc--------------------------EEeccCccccC
Q 018745 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP--------------------------IMMSAGELESG 188 (351)
Q Consensus 135 ~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~--------------------------i~vs~s~l~s~ 188 (351)
...++++. ..+.+..+|||||+|||||++|+++|+.+.+.- +.++..
T Consensus 25 ~~L~~~i~--~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaa----- 97 (824)
T PRK07764 25 EPLSTALD--SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAA----- 97 (824)
T ss_pred HHHHHHHH--hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccc-----
Confidence 33444444 346678899999999999999999999997521 111110
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCC
Q 018745 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (351)
Q Consensus 189 ~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~ 268 (351)
.......+|++-..+.-.-..++..|+||||+|.+-. ...+.|+++++ .....
T Consensus 98 -s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------~a~NaLLK~LE-------------EpP~~ 150 (824)
T PRK07764 98 -SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------QGFNALLKIVE-------------EPPEH 150 (824)
T ss_pred -ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------HHHHHHHHHHh-------------CCCCC
Confidence 0012334555433331111246778999999987632 22446777777 23456
Q ss_pred ceEEEEeCCCCCCcchhccCCcceEE-EeCCCHHHHHHHHHHhhcCCCCC
Q 018745 269 VPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVCKGIFRNDNVA 317 (351)
Q Consensus 269 v~II~TTN~~~~Ld~aLlR~gRfd~~-i~~P~~e~R~~Il~~~~~~~~~~ 317 (351)
+.+|++|+.++.|.+.++. |+-.+ +..++.++..++|..++..+++.
T Consensus 151 ~~fIl~tt~~~kLl~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 151 LKFIFATTEPDKVIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred eEEEEEeCChhhhhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 6788888889999888775 43332 23478888888888888776664
No 120
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=1.3e-10 Score=121.33 Aligned_cols=171 Identities=15% Similarity=0.206 Sum_probs=106.8
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc--------------
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------- 176 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~-------------- 176 (351)
|.-+|+.++|.. .+....++.+.. .+.+..+|||||+|||||++|+.+|+++.+.
T Consensus 11 rP~~f~~viGq~---------~v~~~L~~~i~~--~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 11 RPQTFEDVVGQE---------HITKTLKNAIKQ--GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCCcHHhccCcH---------HHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 333566666652 233334444432 3567899999999999999999999998642
Q ss_pred ----------cEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHH
Q 018745 177 ----------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 246 (351)
Q Consensus 177 ----------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~ 246 (351)
++.++++ .+.....+|++...+...-..+...|+||||+|.+... ....|+
T Consensus 80 ~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~-------------a~naLL 140 (559)
T PRK05563 80 KAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG-------------AFNALL 140 (559)
T ss_pred HHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-------------HHHHHH
Confidence 2222221 12334567777666521111456779999999876311 233555
Q ss_pred HhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCC--CHHHHHH
Q 018745 247 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV--ADDDIVK 323 (351)
Q Consensus 247 ~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~--~~~~l~~ 323 (351)
..++ .....+.+|++|+.++.+++.++. |+..+-. -|+.++..++++.++...++ +.+.+..
T Consensus 141 KtLE-------------epp~~~ifIlatt~~~ki~~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ 205 (559)
T PRK05563 141 KTLE-------------EPPAHVIFILATTEPHKIPATILS--RCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRL 205 (559)
T ss_pred HHhc-------------CCCCCeEEEEEeCChhhCcHHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 5666 224456777778889999998875 4444322 38888988888888877664 4444444
Q ss_pred Hhc
Q 018745 324 LVD 326 (351)
Q Consensus 324 l~~ 326 (351)
++.
T Consensus 206 ia~ 208 (559)
T PRK05563 206 IAR 208 (559)
T ss_pred HHH
Confidence 444
No 121
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.18 E-value=2.3e-10 Score=102.61 Aligned_cols=144 Identities=10% Similarity=0.058 Sum_probs=92.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCc------------------------cEEeccCccccCCCCChHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~ 202 (351)
+.|..+|||||+|+|||++|+++++.+... +..+... ... -....++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHH
Confidence 567899999999999999999999997542 1111110 001 12245655555
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCc
Q 018745 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (351)
Q Consensus 203 ~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld 282 (351)
.+...-..+...|++|||+|.+... ....|+..++ .......+|++||++..++
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLE-------------EPPPNTLFILITPSPEKLL 140 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChHhCh
Confidence 5521112456779999999876421 1234555555 2234567888888889999
Q ss_pred chhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCCCHHHHHHHhcCC
Q 018745 283 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTF 328 (351)
Q Consensus 283 ~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~~~~~l~~l~~gf 328 (351)
+++..++ . .+.+ |+.++..+++... +++.+.+..+++..
T Consensus 141 ~~i~sr~--~-~~~~~~~~~~~~~~~l~~~----gi~~~~~~~i~~~~ 181 (188)
T TIGR00678 141 PTIRSRC--Q-VLPFPPLSEEALLQWLIRQ----GISEEAAELLLALA 181 (188)
T ss_pred HHHHhhc--E-EeeCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHc
Confidence 9998744 3 3444 8899998888776 47766655544433
No 122
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.1e-10 Score=121.09 Aligned_cols=167 Identities=13% Similarity=0.198 Sum_probs=100.0
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe--ccC------
Q 018745 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM--SAG------ 183 (351)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v--s~s------ 183 (351)
.-+|++++|. ..+....++++. ..+.+..+||+||||+|||++|+++|+.+++..... .++
T Consensus 12 P~~f~divGq---------~~v~~~L~~~i~--~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 12 PKSFSELVGQ---------EHVVRALTNALE--QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CCcHHHhcCc---------HHHHHHHHHHHH--cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 3355666654 223333444443 345678999999999999999999999987631100 000
Q ss_pred --------ccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCc
Q 018745 184 --------ELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 253 (351)
Q Consensus 184 --------~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~ 253 (351)
++. +.........+|++...+...-..++..|+||||+|.+... ....|+..++
T Consensus 81 ~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~-------------a~naLLK~LE--- 144 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS-------------AFNAMLKTLE--- 144 (527)
T ss_pred HHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH-------------HHHHHHHHHh---
Confidence 000 00001123456666665521111456679999999865321 1234555666
Q ss_pred cccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEE-EeCCCHHHHHHHHHHhhcCCCCC
Q 018745 254 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVCKGIFRNDNVA 317 (351)
Q Consensus 254 ~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~-i~~P~~e~R~~Il~~~~~~~~~~ 317 (351)
.....+.+|++|++++.+.+.++. |+-.+ +.-|+.++-.+.+..++..+++.
T Consensus 145 ----------epp~~~~fIL~t~d~~kil~tI~S--Rc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 145 ----------EPPEHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred ----------CCCCCEEEEEEeCChhhCchhHHH--HHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 234567888888999999888664 44322 22388888888888877666554
No 123
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=3.3e-10 Score=118.56 Aligned_cols=175 Identities=9% Similarity=0.099 Sum_probs=105.0
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc--------------
Q 018745 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------- 176 (351)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~-------------- 176 (351)
|.-+|+++++. ..+....++++.. .+.+..+||+||+|||||++|+++|+.+.+.
T Consensus 11 RP~sf~dIiGQ---------e~v~~~L~~ai~~--~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 11 RPQTFAEVAGQ---------ETVKAILSRAAQE--NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCCHHHhcCC---------HHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 33455665554 2234444555543 3556799999999999999999999998753
Q ss_pred ----------cEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHH
Q 018745 177 ----------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 246 (351)
Q Consensus 177 ----------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~ 246 (351)
++.+++.. ......++.+-..+...-..+...||||||+|.+.. .....|+
T Consensus 80 ~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-------------~a~naLL 140 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-------------EAFNALL 140 (624)
T ss_pred HHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-------------HHHHHHH
Confidence 12222110 011223444322221111245678999999987631 1134455
Q ss_pred HhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCC--CCHHHHH
Q 018745 247 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIV 322 (351)
Q Consensus 247 ~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~--~~~~~l~ 322 (351)
..++ .....+.+|++||.++.+.+.++. |+.. |.+ ++.++..++++.++..++ ++.+.+.
T Consensus 141 k~LE-------------EP~~~~ifILaTt~~~kll~TI~S--Rcq~-i~F~pLs~~eL~~~L~~il~~egi~id~eal~ 204 (624)
T PRK14959 141 KTLE-------------EPPARVTFVLATTEPHKFPVTIVS--RCQH-FTFTRLSEAGLEAHLTKVLGREGVDYDPAAVR 204 (624)
T ss_pred HHhh-------------ccCCCEEEEEecCChhhhhHHHHh--hhhc-cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5665 224567888899999999888775 4433 333 888888888888777665 4454444
Q ss_pred HHhcCCCCCC
Q 018745 323 KLVDTFPGQS 332 (351)
Q Consensus 323 ~l~~gf~g~d 332 (351)
.++. +++.+
T Consensus 205 lIA~-~s~Gd 213 (624)
T PRK14959 205 LIAR-RAAGS 213 (624)
T ss_pred HHHH-HcCCC
Confidence 4333 44443
No 124
>PRK12377 putative replication protein; Provisional
Probab=99.16 E-value=1.7e-10 Score=108.68 Aligned_cols=99 Identities=14% Similarity=0.174 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHH---HHHHH-hCCceEEEeccc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA---ADIIK-KGKMCCLMINDL 221 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A---~~~~~-~~~p~IL~IDEI 221 (351)
..+++||||||||||+||.+||+++ |..++.++..++... ++..|... .+.+. -....+|+|||+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~--------l~~~~~~~~~~~~~l~~l~~~dLLiIDDl 172 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR--------LHESYDNGQSGEKFLQELCKVDLLVLDEI 172 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH--------HHHHHhccchHHHHHHHhcCCCEEEEcCC
Confidence 3689999999999999999999987 667777776655432 22222110 01122 457789999999
Q ss_pred ccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC
Q 018745 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (351)
Q Consensus 222 D~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~ 278 (351)
....... .....|.++++ . ....+.|+|+|||..
T Consensus 173 g~~~~s~-----------~~~~~l~~ii~--------~----R~~~~~ptiitSNl~ 206 (248)
T PRK12377 173 GIQRETK-----------NEQVVLNQIID--------R----RTASMRSVGMLTNLN 206 (248)
T ss_pred CCCCCCH-----------HHHHHHHHHHH--------H----HHhcCCCEEEEcCCC
Confidence 6543211 12345566666 1 334567999999964
No 125
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=5.2e-10 Score=116.92 Aligned_cols=160 Identities=9% Similarity=0.118 Sum_probs=100.8
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc----------------
Q 018745 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------- 176 (351)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~---------------- 176 (351)
-+|++++|. ..+....++++. ..+.|..+||+||+|||||++|+++|+.+.+.
T Consensus 10 ~~f~eivGq---------~~i~~~L~~~i~--~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 78 (584)
T PRK14952 10 ATFAEVVGQ---------EHVTEPLSSALD--AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVA 78 (584)
T ss_pred CcHHHhcCc---------HHHHHHHHHHHH--cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHH
Confidence 345666654 333444555554 34678889999999999999999999998752
Q ss_pred ----------cEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHH
Q 018745 177 ----------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 246 (351)
Q Consensus 177 ----------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~ 246 (351)
++.++++ .......+|++-..+.-.-..+...|+||||+|.+-.. ....|+
T Consensus 79 i~~~~~~~~dvieidaa------s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-------------A~NALL 139 (584)
T PRK14952 79 LAPNGPGSIDVVELDAA------SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-------------GFNALL 139 (584)
T ss_pred hhcccCCCceEEEeccc------cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-------------HHHHHH
Confidence 1111111 00123445555444411112456679999999866321 234566
Q ss_pred HhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEE-EeCCCHHHHHHHHHHhhcCCCCC
Q 018745 247 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVCKGIFRNDNVA 317 (351)
Q Consensus 247 ~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~-i~~P~~e~R~~Il~~~~~~~~~~ 317 (351)
..++ .....+.+|++|+.++.|.++++. |+-.+ +..++.++..+.+..++..+++.
T Consensus 140 K~LE-------------Epp~~~~fIL~tte~~kll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 140 KIVE-------------EPPEHLIFIFATTEPEKVLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred HHHh-------------cCCCCeEEEEEeCChHhhHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 6666 334567788888989999999875 33332 22477888888888888776643
No 126
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=2.9e-10 Score=118.43 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=94.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc------------------------cEEeccCccccCCCCChHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQR 200 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~ 200 (351)
..+.|.++||+||+|+|||++|+++|+.+.+. ++.++++ . ......+|.+
T Consensus 34 ~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaa----s--~igVd~IReI 107 (605)
T PRK05896 34 NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAA----S--NNGVDEIRNI 107 (605)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccc----c--ccCHHHHHHH
Confidence 34667899999999999999999999998541 1111111 0 0122346666
Q ss_pred HHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCC
Q 018745 201 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 280 (351)
Q Consensus 201 f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~ 280 (351)
...+...-..+...|++|||+|.+-.. ....|+..++ .+...+.+|++|+.++.
T Consensus 108 i~~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~NaLLKtLE-------------EPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 108 IDNINYLPTTFKYKVYIIDEAHMLSTS-------------AWNALLKTLE-------------EPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHHHHhchhhCCcEEEEEechHhCCHH-------------HHHHHHHHHH-------------hCCCcEEEEEECCChHh
Confidence 655421111345579999999865311 2345666666 23455678888888999
Q ss_pred CcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCC--CCHHHHHHHh
Q 018745 281 LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDDIVKLV 325 (351)
Q Consensus 281 Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~--~~~~~l~~l~ 325 (351)
|.++++++ +.. +.+ |+.++...+++..+...+ ++.+.+..++
T Consensus 162 Ll~TI~SR--cq~-ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La 207 (605)
T PRK05896 162 IPLTIISR--CQR-YNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIA 207 (605)
T ss_pred hhHHHHhh--hhh-cccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99998864 433 343 888888888888776654 5555544443
No 127
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.15 E-value=3.6e-10 Score=120.63 Aligned_cols=139 Identities=17% Similarity=0.217 Sum_probs=86.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccccCC----------C------C-ChHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGN----------A------G-EPAKLIRQRYR 202 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~s~~----------~------G-e~~~~ir~~f~ 202 (351)
..|+|+|+||||||.+++.+.+++ .+.++.+++..+...+ . | .....+..+|.
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~ 861 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFN 861 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHh
Confidence 456799999999999999998876 2456778875432211 0 1 11223444444
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCC---CC
Q 018745 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND---FS 279 (351)
Q Consensus 203 ~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~---~~ 279 (351)
...+ ......||+|||||.+..+. ...|+++++-+ .....++.+|+++|. ++
T Consensus 862 ~L~k--~~r~v~IIILDEID~L~kK~-------------QDVLYnLFR~~----------~~s~SKLiLIGISNdlDLpe 916 (1164)
T PTZ00112 862 QNKK--DNRNVSILIIDEIDYLITKT-------------QKVLFTLFDWP----------TKINSKLVLIAISNTMDLPE 916 (1164)
T ss_pred hhhc--ccccceEEEeehHhhhCccH-------------HHHHHHHHHHh----------hccCCeEEEEEecCchhcch
Confidence 3200 13346799999999887531 12345555411 123457889999997 55
Q ss_pred CCcchhccCCcceEEEe-CCCHHHHHHHHHHhhcC
Q 018745 280 TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRN 313 (351)
Q Consensus 280 ~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~ 313 (351)
.|+|.+..+.+..+... -++.+++.+|++..+..
T Consensus 917 rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 917 RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 67777765444433333 39999999998877653
No 128
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.14 E-value=4.6e-10 Score=109.46 Aligned_cols=134 Identities=17% Similarity=0.245 Sum_probs=87.0
Q ss_pred HHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc---cEEeccCccccCCCCChHHHHHHHHHHHHHHHH-hC
Q 018745 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KG 211 (351)
Q Consensus 136 i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~---~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~ 211 (351)
+.++++....++ .++||||||||||+||+.|+....-+ |+.+++.. ...+.+|++|+.+..... ..
T Consensus 152 llrs~ieq~~ip---SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~k 221 (554)
T KOG2028|consen 152 LLRSLIEQNRIP---SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTK 221 (554)
T ss_pred HHHHHHHcCCCC---ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhc
Confidence 455665544333 78999999999999999999987555 77776652 234679999999854443 56
Q ss_pred CceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEE-EeCCC-CCCcchhccCC
Q 018745 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV-TGNDF-STLYAPLIRDG 289 (351)
Q Consensus 212 ~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~-TTN~~-~~Ld~aLlR~g 289 (351)
+..|||||||..+-... +.+|+ -..++..|.+|+ ||..| -.|..||+.+.
T Consensus 222 rkTilFiDEiHRFNksQ-------------QD~fL---------------P~VE~G~I~lIGATTENPSFqln~aLlSRC 273 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQ-------------QDTFL---------------PHVENGDITLIGATTENPSFQLNAALLSRC 273 (554)
T ss_pred ceeEEEeHHhhhhhhhh-------------hhccc---------------ceeccCceEEEecccCCCccchhHHHHhcc
Confidence 78999999996432111 11111 113456677775 44444 48899999754
Q ss_pred cceEEEeC-CCHHHHHHHHHH
Q 018745 290 RMEKFYWA-PTREDRIGVCKG 309 (351)
Q Consensus 290 Rfd~~i~~-P~~e~R~~Il~~ 309 (351)
| .++.. .+.++-..|+.+
T Consensus 274 ~--VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 274 R--VFVLEKLPVNAVVTILMR 292 (554)
T ss_pred c--eeEeccCCHHHHHHHHHH
Confidence 4 44333 666666666554
No 129
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=2.1e-10 Score=120.11 Aligned_cols=171 Identities=12% Similarity=0.196 Sum_probs=105.7
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc-------------
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------- 176 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~------------- 176 (351)
.|.-+|++++|- ..+....++++. ..+.|..+|||||+|+|||++|+++|+++.+.
T Consensus 10 ~RP~~f~~iiGq---------~~v~~~L~~~i~--~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQ---------EHVSRTLQNAID--TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCc---------HHHHHHHHHHHH--cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 344456676665 223334444444 33678899999999999999999999998653
Q ss_pred -----------cEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHH
Q 018745 177 -----------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATL 245 (351)
Q Consensus 177 -----------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L 245 (351)
++.+++. .......++++...+.-.-......|+||||+|.+.. .....|
T Consensus 79 c~~i~~g~~~d~~eid~~------s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-------------~a~naL 139 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGA------SNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-------------NAFNAL 139 (576)
T ss_pred HHHHhcCCCCCeeeeecc------CccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-------------HHHHHH
Confidence 1111111 1122345666665541111134567999999986532 123466
Q ss_pred HHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCC--HHHHH
Q 018745 246 MNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIV 322 (351)
Q Consensus 246 ~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~--~~~l~ 322 (351)
+..++ .....+.+|++||+++.|.+.++. |+..+-. -++.++....+..+++.+++. .+.+.
T Consensus 140 Lk~LE-------------epp~~~~fIl~t~~~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~ 204 (576)
T PRK14965 140 LKTLE-------------EPPPHVKFIFATTEPHKVPITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALA 204 (576)
T ss_pred HHHHH-------------cCCCCeEEEEEeCChhhhhHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 66777 335567888888999999999875 3332222 377888787887777666544 44444
Q ss_pred HHh
Q 018745 323 KLV 325 (351)
Q Consensus 323 ~l~ 325 (351)
.++
T Consensus 205 ~la 207 (576)
T PRK14965 205 LVA 207 (576)
T ss_pred HHH
Confidence 333
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=1.7e-09 Score=110.09 Aligned_cols=170 Identities=13% Similarity=0.160 Sum_probs=102.0
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc-------------
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------- 176 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~------------- 176 (351)
.|.-+|++++|.. .+....++++. ..+.|..+|||||||+|||++|+++|+++...
T Consensus 11 yRP~~~~diiGq~---------~~v~~L~~~i~--~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 11 YRPQTFSEILGQD---------AVVAVLKNALR--FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred hCCCCHHHhcCcH---------HHHHHHHHHHH--cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 3444566666641 22223344443 23567899999999999999999999998542
Q ss_pred ------------cEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHH
Q 018745 177 ------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNAT 244 (351)
Q Consensus 177 ------------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~ 244 (351)
++.+.+. .. .....++++-....-.-..+...|+||||+|.+.. .....
T Consensus 80 ~C~~i~~~~~~d~~~i~g~----~~--~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-------------~~~n~ 140 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGA----SH--RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-------------EAFNS 140 (451)
T ss_pred HHHHHhcCCCCceEEeecc----cc--CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-------------HHHHH
Confidence 1111110 00 11233444333221111146778999999986531 12345
Q ss_pred HHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCC--CCHHH
Q 018745 245 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VADDD 320 (351)
Q Consensus 245 L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~--~~~~~ 320 (351)
|+..++ .....+.+|++||.+..|.+++.. |+.. +.. |+.++..+++...++..+ ++.+.
T Consensus 141 LLk~lE-------------ep~~~~~~Il~t~~~~kl~~tI~s--Rc~~-v~f~~l~~~el~~~L~~~~~~eg~~i~~~a 204 (451)
T PRK06305 141 LLKTLE-------------EPPQHVKFFLATTEIHKIPGTILS--RCQK-MHLKRIPEETIIDKLALIAKQEGIETSREA 204 (451)
T ss_pred HHHHhh-------------cCCCCceEEEEeCChHhcchHHHH--hceE-EeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 666666 224466788888999999999886 4433 343 888888888888776655 44444
Q ss_pred HHHHh
Q 018745 321 IVKLV 325 (351)
Q Consensus 321 l~~l~ 325 (351)
+..++
T Consensus 205 l~~L~ 209 (451)
T PRK06305 205 LLPIA 209 (451)
T ss_pred HHHHH
Confidence 44444
No 131
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.11 E-value=1e-09 Score=105.43 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=93.2
Q ss_pred HHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC-----ccEEeccCccccCCCCChHHHHHHHHHHHHHHHH
Q 018745 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 209 (351)
Q Consensus 135 ~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~-----~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~ 209 (351)
...++++.... .| .++||||||||||++++++++++.. .++.++.+.- .....+++.+........
T Consensus 27 ~~l~~~i~~~~--~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~------~~~~~~~~~i~~~~~~~~ 97 (319)
T PRK00440 27 ERLKSYVKEKN--MP-HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE------RGIDVIRNKIKEFARTAP 97 (319)
T ss_pred HHHHHHHhCCC--CC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc------cchHHHHHHHHHHHhcCC
Confidence 34445544322 22 4799999999999999999999732 2333333211 111223333222211111
Q ss_pred --hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhcc
Q 018745 210 --KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 287 (351)
Q Consensus 210 --~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR 287 (351)
...+.+|+|||+|.+... ....|..++++ ......+|+++|.+..+.+++.+
T Consensus 98 ~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le~-------------~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 98 VGGAPFKIIFLDEADNLTSD-------------AQQALRRTMEM-------------YSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred CCCCCceEEEEeCcccCCHH-------------HHHHHHHHHhc-------------CCCCCeEEEEeCCccccchhHHH
Confidence 134679999999876321 12234445551 12345688888988888888876
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhcCCC--CCHHHHHHHhcCCCCCC
Q 018745 288 DGRMEKFYWAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQS 332 (351)
Q Consensus 288 ~gRfd~~i~~P~~e~R~~Il~~~~~~~~--~~~~~l~~l~~gf~g~d 332 (351)
++.. ..+..|+.++...+++.++...+ ++.+.+..++.. ++.+
T Consensus 152 r~~~-~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~-~~gd 196 (319)
T PRK00440 152 RCAV-FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYV-SEGD 196 (319)
T ss_pred Hhhe-eeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCC
Confidence 4332 22223888888888888886655 456666666554 3433
No 132
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.11 E-value=4.7e-10 Score=116.44 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=89.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccc-------cCCCCChHHHH---HHHHHHH--
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE-------SGNAGEPAKLI---RQRYREA-- 204 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~-------s~~~Ge~~~~i---r~~f~~A-- 204 (351)
+.+..+||+||||||||++|+++++++ +.+|+.+++.... +...+.....+ ...|..+
T Consensus 84 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~ 163 (531)
T TIGR02902 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGI 163 (531)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCc
Confidence 346689999999999999999998753 3567888875321 11111000000 0001000
Q ss_pred ----HHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccC----CCCc------------ccC
Q 018745 205 ----ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL----PGMY------------NKE 264 (351)
Q Consensus 205 ----~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l----~~~~------------~~~ 264 (351)
...+.+....+|||||+|.+... .+..|+.++++...... .+.+ ...
T Consensus 164 ~~~~~G~l~~a~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (531)
T TIGR02902 164 PQPKPGAVTRAHGGVLFIDEIGELHPV-------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGL 230 (531)
T ss_pred ccccCchhhccCCcEEEEechhhCCHH-------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCc
Confidence 00112345679999999876432 23444555543211000 0000 001
Q ss_pred CCCCceEEEEeCCCCCCcchhccCCcceEEEeC-CCHHHHHHHHHHhhcCCCC--CHHHHH
Q 018745 265 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNV--ADDDIV 322 (351)
Q Consensus 265 ~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~-P~~e~R~~Il~~~~~~~~~--~~~~l~ 322 (351)
...-.+|++|||+++.|+|++++ |+...... ++.+++.+|++..++..++ +.+.+.
T Consensus 231 ~~d~rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~ 289 (531)
T TIGR02902 231 PADFRLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALE 289 (531)
T ss_pred ccceEEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHH
Confidence 11224456778899999999987 56544332 7788899999988876544 344444
No 133
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=5.5e-10 Score=118.50 Aligned_cols=143 Identities=11% Similarity=0.198 Sum_probs=92.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe---ccC----------ccc--cCCCCChHHHHHHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SAG----------ELE--SGNAGEPAKLIRQRYREAADIIKK 210 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v---s~s----------~l~--s~~~Ge~~~~ir~~f~~A~~~~~~ 210 (351)
.+.+..+|||||+|+|||++|+++|+.+.+.-... .+. ++. +.........+|++...+...-..
T Consensus 37 ~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~ 116 (725)
T PRK07133 37 NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQ 116 (725)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhc
Confidence 36688999999999999999999999986531100 000 000 000011234577776665222224
Q ss_pred CCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCc
Q 018745 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 290 (351)
Q Consensus 211 ~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gR 290 (351)
+...|++|||+|.+... ...+|+..++ .+...+.+|++|+.++.|.++++. |
T Consensus 117 g~~KV~IIDEa~~LT~~-------------A~NALLKtLE-------------EPP~~tifILaTte~~KLl~TI~S--R 168 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKS-------------AFNALLKTLE-------------EPPKHVIFILATTEVHKIPLTILS--R 168 (725)
T ss_pred CCCEEEEEEChhhCCHH-------------HHHHHHHHhh-------------cCCCceEEEEEcCChhhhhHHHHh--h
Confidence 66789999999875321 2345666666 234566778888899999998876 4
Q ss_pred ceEEEeC--CCHHHHHHHHHHhhcCCCCC
Q 018745 291 MEKFYWA--PTREDRIGVCKGIFRNDNVA 317 (351)
Q Consensus 291 fd~~i~~--P~~e~R~~Il~~~~~~~~~~ 317 (351)
+.+ +.. |+.++..+++...+...++.
T Consensus 169 cq~-ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 169 VQR-FNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred cee-EEccCCCHHHHHHHHHHHHHHcCCC
Confidence 433 443 88888888888877666554
No 134
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=7.3e-10 Score=113.77 Aligned_cols=152 Identities=16% Similarity=0.249 Sum_probs=91.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCc-cEE------------eccC---ccc--cCCCCChHHHHHHHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-PIM------------MSAG---ELE--SGNAGEPAKLIRQRYREAADI 207 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~-~i~------------vs~s---~l~--s~~~Ge~~~~ir~~f~~A~~~ 207 (351)
.+.+..+|||||+|+|||++|+++|+.+.+. ... +..+ ++. +.........+|.+...+...
T Consensus 35 ~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~ 114 (486)
T PRK14953 35 QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYT 114 (486)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhC
Confidence 3567789999999999999999999998641 000 0000 000 000011223455554444111
Q ss_pred HHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhcc
Q 018745 208 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 287 (351)
Q Consensus 208 ~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR 287 (351)
-..+.+.|+||||+|.+... ....|+..++ .....+.+|++|+.++.+.+++..
T Consensus 115 P~~~~~KVvIIDEad~Lt~~-------------a~naLLk~LE-------------epp~~~v~Il~tt~~~kl~~tI~S 168 (486)
T PRK14953 115 PIKGKYKVYIIDEAHMLTKE-------------AFNALLKTLE-------------EPPPRTIFILCTTEYDKIPPTILS 168 (486)
T ss_pred cccCCeeEEEEEChhhcCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEECCHHHHHHHHHH
Confidence 11456789999999865311 1234555555 223455677777888889888876
Q ss_pred CCcceEEEeC--CCHHHHHHHHHHhhcCCCCC--HHHHHHHhc
Q 018745 288 DGRMEKFYWA--PTREDRIGVCKGIFRNDNVA--DDDIVKLVD 326 (351)
Q Consensus 288 ~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~~--~~~l~~l~~ 326 (351)
+ +.. +.. |+.++...++..+++..++. .+.+..+++
T Consensus 169 R--c~~-i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~ 208 (486)
T PRK14953 169 R--CQR-FIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQ 208 (486)
T ss_pred h--ceE-EEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4 333 333 88999999998888776655 355554443
No 135
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=7.3e-10 Score=116.77 Aligned_cols=152 Identities=13% Similarity=0.196 Sum_probs=93.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE----eccC--------------cc--ccCCCCChHHHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAG--------------EL--ESGNAGEPAKLIRQRYREAAD 206 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~----vs~s--------------~l--~s~~~Ge~~~~ir~~f~~A~~ 206 (351)
+.+..+|||||+|+|||++|+++|+.+.+.... ..++ ++ .+.........+|++...+..
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~ 115 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQF 115 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhh
Confidence 456689999999999999999999998763110 0000 00 011112334567777766521
Q ss_pred HHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhc
Q 018745 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (351)
Q Consensus 207 ~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLl 286 (351)
.-..+...|+||||+|.+-. .....|+..++ .....+.+|++|++++.+.+.++
T Consensus 116 ~p~~~~~KViIIDEad~Lt~-------------~a~naLLK~LE-------------ePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 116 APVQARWKVYVIDECHMLST-------------AAFNALLKTLE-------------EPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ChhcCCceEEEEECccccCH-------------HHHHHHHHHHh-------------cCCcCeEEEEEeCChhhhhHHHH
Confidence 11135567999999987631 12345566666 23455678888888999988887
Q ss_pred cCCcceEEEe-CCCHHHHHHHHHHhhcCCC--CCHHHHHHHhc
Q 018745 287 RDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVD 326 (351)
Q Consensus 287 R~gRfd~~i~-~P~~e~R~~Il~~~~~~~~--~~~~~l~~l~~ 326 (351)
. |+..+-. .|+.++-...+..++..++ ++.+.+..+++
T Consensus 170 S--Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~ 210 (620)
T PRK14948 170 S--RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQ 210 (620)
T ss_pred h--heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5 4444333 3777777777776665544 44555444433
No 136
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.09 E-value=1.7e-10 Score=112.97 Aligned_cols=139 Identities=20% Similarity=0.221 Sum_probs=80.2
Q ss_pred cccccccccccCCCC---------CchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCc
Q 018745 109 GLRTYNLDNTIDGLY---------IAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GIN 176 (351)
Q Consensus 109 ~~~~~~~~~~~~~~~---------i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~ 176 (351)
.+...+|++...++| ..++-...-+...+++|.....- ...+++||||+|||||+|+.|||+++ |..
T Consensus 135 ~~~~~~F~nf~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~f~~~f~~-~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~ 213 (329)
T PRK06835 135 ILKEENFSNFNLNYYSDEKDDDEPLSPRKNMEKILEKCKNFIENFDK-NNENLLFYGNTGTGKTFLSNCIAKELLDRGKS 213 (329)
T ss_pred HHHhCChhhCCccccCccccccCCCCHHHHHHHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCe
Confidence 344556666655443 13333323344555666653222 22689999999999999999999987 777
Q ss_pred cEEeccCccccCCCCChHHHHHHHHHH---HHHHH-HhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCC
Q 018745 177 PIMMSAGELESGNAGEPAKLIRQRYRE---AADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 252 (351)
Q Consensus 177 ~i~vs~s~l~s~~~Ge~~~~ir~~f~~---A~~~~-~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~ 252 (351)
++.++..++...... ..|.. ....+ .-....+|+|||+...... ......|.++++
T Consensus 214 V~y~t~~~l~~~l~~-------~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t-----------~~~~~~Lf~iin-- 273 (329)
T PRK06835 214 VIYRTADELIEILRE-------IRFNNDKELEEVYDLLINCDLLIIDDLGTEKIT-----------EFSKSELFNLIN-- 273 (329)
T ss_pred EEEEEHHHHHHHHHH-------HHhccchhHHHHHHHhccCCEEEEeccCCCCCC-----------HHHHHHHHHHHH--
Confidence 888887766432210 00100 00001 1345679999999654221 122344556665
Q ss_pred ccccCCCCcccCCCCCceEEEEeCCC
Q 018745 253 TCVQLPGMYNKEENPRVPIIVTGNDF 278 (351)
Q Consensus 253 ~~~~l~~~~~~~~~~~v~II~TTN~~ 278 (351)
. ....+.++|+|||..
T Consensus 274 ------~----R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 274 ------K----RLLRQKKMIISTNLS 289 (329)
T ss_pred ------H----HHHCCCCEEEECCCC
Confidence 1 123356899999964
No 137
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.09 E-value=9.4e-10 Score=111.07 Aligned_cols=132 Identities=18% Similarity=0.125 Sum_probs=73.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCc-----cEEeccC------ccccCCC--CChHH----HHHHHHHHHHHHHH--
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAG------ELESGNA--GEPAK----LIRQRYREAADIIK-- 209 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~-----~i~vs~s------~l~s~~~--Ge~~~----~ir~~f~~A~~~~~-- 209 (351)
...++|+||||||||++|+.+|..+... +..+..+ ++..++. +..-. .+.+....| .
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A----~~~ 269 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQA----KEQ 269 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHH----Hhc
Confidence 4579999999999999999999988431 1111111 2222221 11101 122333444 3
Q ss_pred hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCcc-----ccC--CCCc--ccCCCCCceEEEEeCCCC-
Q 018745 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-----VQL--PGMY--NKEENPRVPIIVTGNDFS- 279 (351)
Q Consensus 210 ~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~-----~~l--~~~~--~~~~~~~v~II~TTN~~~- 279 (351)
-..|++|||||||..-.. .+.+.++.++++-.. +.+ .... ......++.||+|+|..+
T Consensus 270 p~~~~vliIDEINRani~------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Dr 337 (459)
T PRK11331 270 PEKKYVFIIDEINRANLS------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADR 337 (459)
T ss_pred ccCCcEEEEehhhccCHH------------HhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCcccc
Confidence 246899999999854322 122333444442110 110 0110 113357789999999988
Q ss_pred ---CCcchhccCCcceEEEeC-CC
Q 018745 280 ---TLYAPLIRDGRMEKFYWA-PT 299 (351)
Q Consensus 280 ---~Ld~aLlR~gRfd~~i~~-P~ 299 (351)
.+|.||+| ||.. +++ |+
T Consensus 338 s~~~lD~AlrR--RF~f-i~i~p~ 358 (459)
T PRK11331 338 SLAVVDYALRR--RFSF-IDIEPG 358 (459)
T ss_pred chhhccHHHHh--hhhe-EEecCC
Confidence 89999999 5543 443 54
No 138
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=3.9e-10 Score=113.01 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=102.4
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE---------
Q 018745 109 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM--------- 179 (351)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~--------- 179 (351)
.+|.-+|++++|. ..+....++++. +.+.|..+|||||||+|||++|+++|+++.+.-..
T Consensus 9 k~RP~~~~eiiGq---------~~~~~~L~~~~~--~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 9 KYRPKKFADITAQ---------EHITRTIQNSLR--MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred hcCCCcHhhccCh---------HHHHHHHHHHHH--hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 3444456666654 222233444443 34678899999999999999999999999763100
Q ss_pred -eccCcc------c-------cCCCC---ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHH
Q 018745 180 -MSAGEL------E-------SGNAG---EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVN 242 (351)
Q Consensus 180 -vs~s~l------~-------s~~~G---e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~ 242 (351)
-.++.. . ..+.+ .....++++-..+...-..+...|+||||+|.+... -.
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~-------------~~ 144 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA-------------AF 144 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-------------HH
Confidence 001000 0 00011 112345554333311011345679999999865321 12
Q ss_pred HHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCC--CCH
Q 018745 243 ATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDN--VAD 318 (351)
Q Consensus 243 ~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~--~~~ 318 (351)
..|+..++ ...+...+|++|+++..+.+++..++. .+.. ++.++-.+.+...++..+ ++.
T Consensus 145 ~~LLk~LE-------------ep~~~t~~Il~t~~~~kl~~tl~sR~~---~v~f~~l~~~ei~~~l~~~~~~~g~~i~~ 208 (397)
T PRK14955 145 NAFLKTLE-------------EPPPHAIFIFATTELHKIPATIASRCQ---RFNFKRIPLEEIQQQLQGICEAEGISVDA 208 (397)
T ss_pred HHHHHHHh-------------cCCCCeEEEEEeCChHHhHHHHHHHHH---HhhcCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 23455555 223455677777888888888876433 2333 778888888877776554 444
Q ss_pred HHHHHHhcCCCCCCc
Q 018745 319 DDIVKLVDTFPGQSI 333 (351)
Q Consensus 319 ~~l~~l~~gf~g~dl 333 (351)
+.+..++ .+++.++
T Consensus 209 ~al~~l~-~~s~g~l 222 (397)
T PRK14955 209 DALQLIG-RKAQGSM 222 (397)
T ss_pred HHHHHHH-HHcCCCH
Confidence 4443333 3444443
No 139
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=6.2e-10 Score=110.43 Aligned_cols=148 Identities=19% Similarity=0.280 Sum_probs=102.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc-cCCCCChH-HHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~-s~~~Ge~~-~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~ 227 (351)
..|||.||+|+|||+||+.+|+-++++|.+.++..|. .+|+|+.. ..|..++..|.-.+.+.+..|+||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 3699999999999999999999999999999999995 58999864 457777777744445677889999999999854
Q ss_pred CCC-CccchhhhHHHHHHHHHhhcCCccccCCCCcc-cCCCCCceEEEEeC-------CCCCCcchhccCCcceEEEe--
Q 018745 228 MGG-TTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-KEENPRVPIIVTGN-------DFSTLYAPLIRDGRMEKFYW-- 296 (351)
Q Consensus 228 r~~-~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~-~~~~~~v~II~TTN-------~~~~Ld~aLlR~gRfd~~i~-- 296 (351)
..+ .....+...-+++.|+.+++-.. |.+++-.. .......+.|-||| .+..||.-+-| |++....
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtv-VnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGF 383 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTV-VNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGF 383 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccE-EcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhccc
Confidence 432 23357788889999999988422 22222211 11222233333333 35667777776 5554433
Q ss_pred -CCCH
Q 018745 297 -APTR 300 (351)
Q Consensus 297 -~P~~ 300 (351)
.|+.
T Consensus 384 g~~s~ 388 (564)
T KOG0745|consen 384 GAPSS 388 (564)
T ss_pred CCCCC
Confidence 3654
No 140
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.05 E-value=2.1e-09 Score=117.15 Aligned_cols=142 Identities=16% Similarity=0.209 Sum_probs=88.6
Q ss_pred CCCcE-EEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcccc------------CCCCChHHHHHHHHHHHHHHHHh
Q 018745 147 KVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES------------GNAGEPAKLIRQRYREAADIIKK 210 (351)
Q Consensus 147 ~~p~g-lLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s------------~~~Ge~~~~ir~~f~~A~~~~~~ 210 (351)
..|.+ +||+||||+|||++|+++|..+ ...++.++.+++.+ +|+|..+. ..+..+ +++
T Consensus 593 ~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~---g~L~~~---v~~ 666 (852)
T TIGR03345 593 RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG---GVLTEA---VRR 666 (852)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc---chHHHH---HHh
Confidence 35665 8999999999999999999998 34677787776532 13332110 011121 256
Q ss_pred CCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----------
Q 018745 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----------- 279 (351)
Q Consensus 211 ~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~----------- 279 (351)
...+||+|||||.... .+...|++++++-... +.........+.+||+|||...
T Consensus 667 ~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~--d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~ 731 (852)
T TIGR03345 667 KPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVME--DGEGREIDFKNTVILLTSNAGSDLIMALCADPE 731 (852)
T ss_pred CCCcEEEEechhhcCH-------------HHHHHHHHHhhcceee--cCCCcEEeccccEEEEeCCCchHHHHHhccCcc
Confidence 7789999999985332 2445677777732110 1111123456789999999522
Q ss_pred ------------------CCcchhccCCcceEEEeC-CCHHHHHHHHHHhh
Q 018745 280 ------------------TLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIF 311 (351)
Q Consensus 280 ------------------~Ld~aLlR~gRfd~~i~~-P~~e~R~~Il~~~~ 311 (351)
.+.|+++ +|++.+... .+.++..+|+...+
T Consensus 732 ~~~~~~~~~~~~~~~~~~~f~PEfl--nRi~iI~F~pLs~e~l~~Iv~~~L 780 (852)
T TIGR03345 732 TAPDPEALLEALRPELLKVFKPAFL--GRMTVIPYLPLDDDVLAAIVRLKL 780 (852)
T ss_pred cCcchHHHHHHHHHHHHHhccHHHh--cceeEEEeCCCCHHHHHHHHHHHH
Confidence 1445555 477744333 88888888865554
No 141
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.05 E-value=3.8e-10 Score=106.12 Aligned_cols=113 Identities=11% Similarity=0.250 Sum_probs=68.5
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHH----HH
Q 018745 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA----AD 206 (351)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A----~~ 206 (351)
...++.|+.... ....+++|+|+||||||+|+.+||+++ |..++.++..++.+. ++..|..+ .+
T Consensus 85 l~~a~~~~~~~~-~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~--------l~~~~~~~~~~~~~ 155 (244)
T PRK07952 85 LSKARQYVEEFD-GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA--------MKDTFSNSETSEEQ 155 (244)
T ss_pred HHHHHHHHHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH--------HHHHHhhccccHHH
Confidence 344555553221 113589999999999999999999998 677888877666432 12222100 01
Q ss_pred HHH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC
Q 018745 207 IIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (351)
Q Consensus 207 ~~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~ 278 (351)
++. .....+|+|||++..... ......|.++++ . ....+.|+|+|||..
T Consensus 156 ~l~~l~~~dlLvIDDig~~~~s-----------~~~~~~l~~Ii~--------~----Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 156 LLNDLSNVDLLVIDEIGVQTES-----------RYEKVIINQIVD--------R----RSSSKRPTGMLTNSN 205 (244)
T ss_pred HHHHhccCCEEEEeCCCCCCCC-----------HHHHHHHHHHHH--------H----HHhCCCCEEEeCCCC
Confidence 111 246789999999764321 112234445555 1 234567999999964
No 142
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.05 E-value=8.3e-10 Score=110.27 Aligned_cols=194 Identities=18% Similarity=0.182 Sum_probs=112.6
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC-----CccEEeccC
Q 018745 109 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAG 183 (351)
Q Consensus 109 ~~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg-----~~~i~vs~s 183 (351)
-...|+|+|.+.+. . .+....+++++...++. .-.-++||||+|+|||+|++|++++.. ..++.++..
T Consensus 80 l~~~ytFdnFv~g~----~--N~~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGP----S--NRLAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCC----c--hHHHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 44568888877541 1 13344556666655543 234699999999999999999999873 235555554
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc
Q 018745 184 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK 263 (351)
Q Consensus 184 ~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~ 263 (351)
.+...++...-..--+-|++ ..+-.+|+||||+.+.++.. ....+..++-.+.+
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~------~y~~dlllIDDiq~l~gk~~-------~qeefFh~FN~l~~------------- 206 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKE------KYSLDLLLIDDIQFLAGKER-------TQEEFFHTFNALLE------------- 206 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHH------hhccCeeeechHhHhcCChh-------HHHHHHHHHHHHHh-------------
Confidence 44322211000000011111 12557999999999887643 12223333333332
Q ss_pred CCCCCceEEEEeCC-CCC---CcchhccCCcceEE--EeC--CCHHHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCc
Q 018745 264 EENPRVPIIVTGND-FST---LYAPLIRDGRMEKF--YWA--PTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSI 333 (351)
Q Consensus 264 ~~~~~v~II~TTN~-~~~---Ld~aLlR~gRfd~~--i~~--P~~e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dl 333 (351)
..+ -||+|+.+ |.. +.+.|.. ||+.- +++ |+.+.|.+|++..+... .++.+.+.-++..+...--
T Consensus 207 --~~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvR 281 (408)
T COG0593 207 --NGK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVR 281 (408)
T ss_pred --cCC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHH
Confidence 222 45555543 444 3466654 66543 333 99999999999877655 4456666666777766555
Q ss_pred cccchhh
Q 018745 334 GKFPVPL 340 (351)
Q Consensus 334 df~galr 340 (351)
+..|||.
T Consensus 282 eLegaL~ 288 (408)
T COG0593 282 ELEGALN 288 (408)
T ss_pred HHHHHHH
Confidence 5555553
No 143
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=2.4e-09 Score=112.70 Aligned_cols=176 Identities=13% Similarity=0.158 Sum_probs=103.2
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE----------
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM---------- 179 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~---------- 179 (351)
+|.-+|+.++|- +.+....++.+. +.+.|..+|||||+|||||++|+++|+.+.+....
T Consensus 10 yRP~~f~eivGQ---------e~i~~~L~~~i~--~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQ---------EHITHTIQNSLR--MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCc---------HHHHHHHHHHHH--cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 344456666654 233334455443 34778899999999999999999999999773110
Q ss_pred eccCcc------c-------cCCCC---ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHH
Q 018745 180 MSAGEL------E-------SGNAG---EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNA 243 (351)
Q Consensus 180 vs~s~l------~-------s~~~G---e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~ 243 (351)
-.++.. . ..+.+ .....|+++-.....--..+...|+||||+|.+.. ....
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-------------~a~n 145 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-------------AAFN 145 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-------------HHHH
Confidence 000000 0 00011 11344555443331111245567999999986531 1134
Q ss_pred HHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEe--CCCHHHHHHHHHHhhcCCC--CCHH
Q 018745 244 TLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADD 319 (351)
Q Consensus 244 ~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~--~P~~e~R~~Il~~~~~~~~--~~~~ 319 (351)
.|+..+++ ....+.+|++|+.+..|.+++..++. .+. -++.++....+...++..+ ++.+
T Consensus 146 aLLK~LEe-------------Pp~~tv~IL~t~~~~kLl~TI~SRc~---~vef~~l~~~ei~~~L~~i~~~egi~I~~e 209 (620)
T PRK14954 146 AFLKTLEE-------------PPPHAIFIFATTELHKIPATIASRCQ---RFNFKRIPLDEIQSQLQMICRAEGIQIDAD 209 (620)
T ss_pred HHHHHHhC-------------CCCCeEEEEEeCChhhhhHHHHhhce---EEecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 56666662 23445667777788899988876443 333 3788888888887776554 5555
Q ss_pred HHHHHh
Q 018745 320 DIVKLV 325 (351)
Q Consensus 320 ~l~~l~ 325 (351)
.+..++
T Consensus 210 al~~La 215 (620)
T PRK14954 210 ALQLIA 215 (620)
T ss_pred HHHHHH
Confidence 444433
No 144
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.04 E-value=6.6e-10 Score=108.51 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=87.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcccc--CCCCChHHHHH----HHHHHHHH-HHHhCCceEEEeccccc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES--GNAGEPAKLIR----QRYREAAD-IIKKGKMCCLMINDLDA 223 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s--~~~Ge~~~~ir----~~f~~A~~-~~~~~~p~IL~IDEID~ 223 (351)
.+||.||||||||++|+.+|..++.+++.+.+..-.. ...|...-... ..|..... +..... +++++|||+.
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~-~ill~DEInr 123 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR-VILLLDEINR 123 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc-eEEEEecccc
Confidence 6999999999999999999999999999998874432 22232111100 00000000 000011 4999999975
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeC-----CCCCCcchhccCCcceEEEeC-
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEKFYWA- 297 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN-----~~~~Ld~aLlR~gRfd~~i~~- 297 (351)
.. ..++..|+..+++ ..+.+++...........+|+|+| ....|++|+++ ||-..+++
T Consensus 124 a~-------------p~~q~aLl~~l~e-~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~ 187 (329)
T COG0714 124 AP-------------PEVQNALLEALEE-RQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVD 187 (329)
T ss_pred CC-------------HHHHHHHHHHHhC-cEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecC
Confidence 33 2345566777762 123333332122345667788889 67788999997 78777776
Q ss_pred -C-CHHHHHHHHHHhh
Q 018745 298 -P-TREDRIGVCKGIF 311 (351)
Q Consensus 298 -P-~~e~R~~Il~~~~ 311 (351)
| +.++...+.....
T Consensus 188 yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 188 YPDSEEEERIILARVG 203 (329)
T ss_pred CCCchHHHHHHHHhCc
Confidence 7 5555555544333
No 145
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=4e-09 Score=110.08 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=92.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE--eccC--------------ccc--cCCCCChHHHHHHHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM--MSAG--------------ELE--SGNAGEPAKLIRQRYREAADI 207 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~--vs~s--------------~l~--s~~~Ge~~~~ir~~f~~A~~~ 207 (351)
.+.|..+|||||+|+|||++|+++|+.+...--. ..+. ++. +.........++++.+.+.-.
T Consensus 35 ~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~ 114 (563)
T PRK06647 35 NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFP 114 (563)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhc
Confidence 3567899999999999999999999998653100 0000 000 000011234455555443111
Q ss_pred HHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhcc
Q 018745 208 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 287 (351)
Q Consensus 208 ~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR 287 (351)
-..+...|+||||+|.+.. .....|+..++ .....+.+|++|+.+..|.++++.
T Consensus 115 p~~~~~KVvIIDEa~~Ls~-------------~a~naLLK~LE-------------epp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 115 PASSRYRVYIIDEVHMLSN-------------SAFNALLKTIE-------------EPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred hhcCCCEEEEEEChhhcCH-------------HHHHHHHHhhc-------------cCCCCEEEEEecCChHHhHHHHHH
Confidence 1245677999999986531 12334555555 234567788888889999998875
Q ss_pred CCcceEE-EeCCCHHHHHHHHHHhhcCCCCC--HHHHHHHhc
Q 018745 288 DGRMEKF-YWAPTREDRIGVCKGIFRNDNVA--DDDIVKLVD 326 (351)
Q Consensus 288 ~gRfd~~-i~~P~~e~R~~Il~~~~~~~~~~--~~~l~~l~~ 326 (351)
|+..+ +..|+.++..++++..+...++. .+.+..++.
T Consensus 169 --Rc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~ 208 (563)
T PRK06647 169 --RCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAY 208 (563)
T ss_pred --hceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44432 33488888888888877665544 444444443
No 146
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=3.7e-09 Score=110.99 Aligned_cols=161 Identities=12% Similarity=0.156 Sum_probs=99.1
Q ss_pred HHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEec-------cC--------------ccccCC--C
Q 018745 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS-------AG--------------ELESGN--A 190 (351)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs-------~s--------------~l~s~~--~ 190 (351)
....++++. ..+.|..+|||||+|+|||++|+++|+.+.+...... +. ++..-. .
T Consensus 33 v~~L~~~~~--~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s 110 (598)
T PRK09111 33 VRTLTNAFE--TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAAS 110 (598)
T ss_pred HHHHHHHHH--cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccc
Confidence 344445544 3467889999999999999999999999876432111 00 000000 0
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCce
Q 018745 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (351)
Q Consensus 191 Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~ 270 (351)
..+...||++...+...-......|+||||+|.+.. .....|+..++ .....+.
T Consensus 111 ~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-------------~a~naLLKtLE-------------ePp~~~~ 164 (598)
T PRK09111 111 HTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-------------AAFNALLKTLE-------------EPPPHVK 164 (598)
T ss_pred cCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-------------HHHHHHHHHHH-------------hCCCCeE
Confidence 012345676666552111245678999999986631 11335555565 2345567
Q ss_pred EEEEeCCCCCCcchhccCCcceEEEe--CCCHHHHHHHHHHhhcCCCCC--HHHHHHHh
Q 018745 271 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA--DDDIVKLV 325 (351)
Q Consensus 271 II~TTN~~~~Ld~aLlR~gRfd~~i~--~P~~e~R~~Il~~~~~~~~~~--~~~l~~l~ 325 (351)
+|++|+.++.+.+.++. |+.. +. .|+.++...+++..++.+++. .+.+..++
T Consensus 165 fIl~tte~~kll~tI~S--Rcq~-~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa 220 (598)
T PRK09111 165 FIFATTEIRKVPVTVLS--RCQR-FDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIA 220 (598)
T ss_pred EEEEeCChhhhhHHHHh--heeE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 77888888888888764 4543 33 388999999988888766544 44444333
No 147
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.01 E-value=6.6e-09 Score=97.23 Aligned_cols=157 Identities=16% Similarity=0.234 Sum_probs=101.3
Q ss_pred HHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHH-h
Q 018745 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K 210 (351)
Q Consensus 135 ~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~ 210 (351)
.+.+|........+...+||||+.|||||++++++.++. |+.++.+....|.+ +.+++... + .
T Consensus 38 ~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---------l~~l~~~l----~~~ 104 (249)
T PF05673_consen 38 ALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---------LPELLDLL----RDR 104 (249)
T ss_pred HHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---------HHHHHHHH----hcC
Confidence 344454444455677899999999999999999998876 67778777765532 33344443 3 5
Q ss_pred CCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhcc---
Q 018745 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR--- 287 (351)
Q Consensus 211 ~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR--- 287 (351)
..+-|||+||+. +.. + ... ...|..+++ +-. .....+|.|.+|+|+-+.++.-+.-
T Consensus 105 ~~kFIlf~DDLs--Fe~-~----d~~-----yk~LKs~Le--------Ggl-e~~P~NvliyATSNRRHLv~E~~~d~~~ 163 (249)
T PF05673_consen 105 PYKFILFCDDLS--FEE-G----DTE-----YKALKSVLE--------GGL-EARPDNVLIYATSNRRHLVPESFSDRED 163 (249)
T ss_pred CCCEEEEecCCC--CCC-C----cHH-----HHHHHHHhc--------Ccc-ccCCCcEEEEEecchhhccchhhhhccC
Confidence 567899999873 111 1 111 134445555 321 1235778999999987766554322
Q ss_pred ------------------CCcceEEEe--CCCHHHHHHHHHHhhcCCCCC--HHHHHHHh
Q 018745 288 ------------------DGRMEKFYW--APTREDRIGVCKGIFRNDNVA--DDDIVKLV 325 (351)
Q Consensus 288 ------------------~gRfd~~i~--~P~~e~R~~Il~~~~~~~~~~--~~~l~~l~ 325 (351)
..||-..+. -|+.++=.+|++.++...+++ .+.+.+.+
T Consensus 164 ~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~A 223 (249)
T PF05673_consen 164 IQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEA 223 (249)
T ss_pred CCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 135665555 399999999999999766554 44554444
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.01 E-value=3.1e-09 Score=115.65 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhhCCCCCCCc-EEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC-----CCCChHHH-----
Q 018745 131 KLVVHITKNFMSLPNIKVPL-ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKL----- 196 (351)
Q Consensus 131 ~~~~~i~k~~l~~~~~~~p~-glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~-----~~Ge~~~~----- 196 (351)
.+...+.+..........|. .+||+||+|||||++|+++|+.+ +.+++.++.+++.+. +.|.+...
T Consensus 520 ~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~ 599 (821)
T CHL00095 520 AVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE 599 (821)
T ss_pred HHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc
Confidence 33333333333333334454 47999999999999999999987 356788877766321 12211100
Q ss_pred HHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeC
Q 018745 197 IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 276 (351)
Q Consensus 197 ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN 276 (351)
...+.... +....+||+|||+|+... .+...|++++++-... +.........+..+|+|||
T Consensus 600 ~~~l~~~~----~~~p~~VvllDeieka~~-------------~v~~~Llq~le~g~~~--d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 600 GGQLTEAV----RKKPYTVVLFDEIEKAHP-------------DIFNLLLQILDDGRLT--DSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred cchHHHHH----HhCCCeEEEECChhhCCH-------------HHHHHHHHHhccCcee--cCCCcEEecCceEEEEeCC
Confidence 11122222 455569999999986532 2456777787732111 0111123356789999999
Q ss_pred CCCC-------------------------------------CcchhccCCcceEEEeC--CCHHHHHHHHHHhhc
Q 018745 277 DFST-------------------------------------LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR 312 (351)
Q Consensus 277 ~~~~-------------------------------------Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~ 312 (351)
.... +.|+++ +|+|..+.. .+.++..+|+...+.
T Consensus 661 ~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefl--nRid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 661 LGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFL--NRLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred cchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHh--ccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 5421 123444 578766653 888888888655543
No 149
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.98 E-value=8.3e-09 Score=108.88 Aligned_cols=165 Identities=15% Similarity=0.224 Sum_probs=92.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCcccc-------CCCCChHHHHHHHHHHHHH----
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES-------GNAGEPAKLIRQRYREAAD---- 206 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~s-------~~~Ge~~~~ir~~f~~A~~---- 206 (351)
.|..++|+||||||||++|+++++.. +.+++.+++..+.. .+.|.... ..+..+..
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~---~~~~~a~~~l~~ 250 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHD---PIYQGARRDLAE 250 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccH---HHHHHHHHHHHH
Confidence 45679999999999999999998765 34678888765421 11111000 01111111
Q ss_pred ---------HHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCc---------------c
Q 018745 207 ---------IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY---------------N 262 (351)
Q Consensus 207 ---------~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~---------------~ 262 (351)
.+......+|||||++.+.. ..+..|+.++++.......+.+ .
T Consensus 251 ~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-------------~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~ 317 (615)
T TIGR02903 251 TGVPEPKTGLVTDAHGGVLFIDEIGELDP-------------LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFE 317 (615)
T ss_pred cCCCchhcCchhhcCCCeEEEeccccCCH-------------HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcc
Confidence 11123456999999976532 1233445555432110001100 0
Q ss_pred cCCCCCceEE-EEeCCCCCCcchhccCCcceEEEeC-CCHHHHHHHHHHhhcCCCCC-HHHHHHHhcCCCC
Q 018745 263 KEENPRVPII-VTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPG 330 (351)
Q Consensus 263 ~~~~~~v~II-~TTN~~~~Ld~aLlR~gRfd~~i~~-P~~e~R~~Il~~~~~~~~~~-~~~l~~l~~gf~g 330 (351)
......+.+| +||++++.++++|+. ||...... ++.++..+|++..+...++. .+++.+++..|+.
T Consensus 318 ~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~ 386 (615)
T TIGR02903 318 EGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI 386 (615)
T ss_pred cCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC
Confidence 0112233444 467788899999875 77765544 78888999998887654432 2345555555554
No 150
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.1e-09 Score=108.82 Aligned_cols=138 Identities=11% Similarity=0.113 Sum_probs=93.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCc-cccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~-l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
.+-..+||+||||+|||.||..||...+.+|+.+-..+ +..-.....-..++..|+.| .+...+||++|||+.+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DA----YkS~lsiivvDdiErLi 611 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDA----YKSPLSIIVVDDIERLL 611 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHh----hcCcceEEEEcchhhhh
Confidence 33479999999999999999999999999998665443 22111111224588899999 88999999999999886
Q ss_pred CCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcch-hccCCcceEEEeCCCHHHH
Q 018745 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDR 303 (351)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~a-LlR~gRfd~~i~~P~~e~R 303 (351)
..-. -..+..|-. .++|+-++. .. .....+.+|++||.+.+.|-.- ++ ..|+..|.+|+-..-
T Consensus 612 D~vp--IGPRfSN~v-lQaL~VllK--------~~--ppkg~kLli~~TTS~~~vL~~m~i~--~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 612 DYVP--IGPRFSNLV-LQALLVLLK--------KQ--PPKGRKLLIFGTTSRREVLQEMGIL--DCFSSTIHVPNLTTG 675 (744)
T ss_pred cccc--cCchhhHHH-HHHHHHHhc--------cC--CCCCceEEEEecccHHHHHHHcCHH--HhhhheeecCccCch
Confidence 4321 112333444 456666665 11 0224567888999887755443 22 368888888765543
No 151
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=7.8e-09 Score=106.93 Aligned_cols=147 Identities=16% Similarity=0.192 Sum_probs=91.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCc------------------------cEEeccCccccCCCCChHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 201 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f 201 (351)
.+.|..+|||||+|+|||++|+++|+.+... ++.++++. ......+|++.
T Consensus 33 grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas------~~gId~IReli 106 (535)
T PRK08451 33 NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELI 106 (535)
T ss_pred CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHH
Confidence 3678889999999999999999999997421 11111110 01124455554
Q ss_pred HHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCC
Q 018745 202 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (351)
Q Consensus 202 ~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~L 281 (351)
..+...-..+...|++|||+|.+.. .....|+..++ .+...+.+|++|+++..|
T Consensus 107 e~~~~~P~~~~~KVvIIDEad~Lt~-------------~A~NALLK~LE-------------Epp~~t~FIL~ttd~~kL 160 (535)
T PRK08451 107 EQTKYKPSMARFKIFIIDEVHMLTK-------------EAFNALLKTLE-------------EPPSYVKFILATTDPLKL 160 (535)
T ss_pred HHHhhCcccCCeEEEEEECcccCCH-------------HHHHHHHHHHh-------------hcCCceEEEEEECChhhC
Confidence 4431000124457999999976532 12335566666 224456778888889999
Q ss_pred cchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCC--HHHHHHHhc
Q 018745 282 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKLVD 326 (351)
Q Consensus 282 d~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~--~~~l~~l~~ 326 (351)
.++++. |+..+.. -++.++..+.++.++..+++. .+.+..++.
T Consensus 161 ~~tI~S--Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 161 PATILS--RTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred chHHHh--hceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999876 4433222 378888888888887766554 444444444
No 152
>PRK06921 hypothetical protein; Provisional
Probab=98.98 E-value=4.3e-09 Score=100.18 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=45.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh----CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEeccccc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDA 223 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~IL~IDEID~ 223 (351)
..+++||||||+|||+|+.+||+++ |..++.++..++.. .++..|....+.+. .....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~--------~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG--------DLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH--------HHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 5689999999999999999999986 56667776654432 12222322212222 34678999999954
No 153
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=3e-09 Score=111.72 Aligned_cols=155 Identities=10% Similarity=0.147 Sum_probs=90.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe---ccC--------------ccc--cCCCCChHHHHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SAG--------------ELE--SGNAGEPAKLIRQRYREAADI 207 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v---s~s--------------~l~--s~~~Ge~~~~ir~~f~~A~~~ 207 (351)
+.+..+|||||+|+|||++|+++|+.+.+..-.- .++ ++. +.........++++...+...
T Consensus 36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~ 115 (585)
T PRK14950 36 RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFR 115 (585)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhC
Confidence 5677899999999999999999999986422100 000 000 000011223455544433111
Q ss_pred HHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhcc
Q 018745 208 IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 287 (351)
Q Consensus 208 ~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR 287 (351)
-......|+||||+|.+.. .....|+..+++ ......+|++|+..+.+.+.+..
T Consensus 116 p~~~~~kVvIIDEa~~L~~-------------~a~naLLk~LEe-------------pp~~tv~Il~t~~~~kll~tI~S 169 (585)
T PRK14950 116 PALARYKVYIIDEVHMLST-------------AAFNALLKTLEE-------------PPPHAIFILATTEVHKVPATILS 169 (585)
T ss_pred cccCCeEEEEEeChHhCCH-------------HHHHHHHHHHhc-------------CCCCeEEEEEeCChhhhhHHHHh
Confidence 1134567999999986532 112345555662 23456777888888888888765
Q ss_pred CCcceEEEe-CCCHHHHHHHHHHhhcCCC--CCHHHHHHHhcCCC
Q 018745 288 DGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFP 329 (351)
Q Consensus 288 ~gRfd~~i~-~P~~e~R~~Il~~~~~~~~--~~~~~l~~l~~gf~ 329 (351)
|+.++.. -++.++..+++...+...+ ++.+.+..++....
T Consensus 170 --R~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~ 212 (585)
T PRK14950 170 --RCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAAT 212 (585)
T ss_pred --ccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4433222 3788888888877776654 44555555544333
No 154
>PHA02244 ATPase-like protein
Probab=98.97 E-value=3.6e-09 Score=104.50 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=74.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccC---CCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG---NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~---~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
...|||+||||||||++|+++|+.++.+++.++...-... +...........|-+| .....+|+|||+|.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-----~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-----FKKGGLFFIDEIDASI 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-----hhcCCEEEEeCcCcCC
Confidence 3459999999999999999999999999998874210001 1111111111122222 3456899999998643
Q ss_pred CCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc-CCCCCceEEEEeCCC-----------CCCcchhccCCcceE
Q 018745 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDF-----------STLYAPLIRDGRMEK 293 (351)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~-~~~~~v~II~TTN~~-----------~~Ld~aLlR~gRfd~ 293 (351)
.. +...|..++++- .+....+. ....+..+|+|+|.+ ..|++|++- ||-.
T Consensus 194 p~-------------vq~~L~~lLd~r---~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv~ 255 (383)
T PHA02244 194 PE-------------ALIIINSAIANK---FFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFAP 255 (383)
T ss_pred HH-------------HHHHHHHHhccC---eEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcEE
Confidence 21 122333344321 11111111 234678899999973 578899885 7764
Q ss_pred EEeC--CC
Q 018745 294 FYWA--PT 299 (351)
Q Consensus 294 ~i~~--P~ 299 (351)
+++ |+
T Consensus 256 -I~~dyp~ 262 (383)
T PHA02244 256 -IEFDYDE 262 (383)
T ss_pred -eeCCCCc
Confidence 444 65
No 155
>PRK08181 transposase; Validated
Probab=98.97 E-value=3.8e-10 Score=107.58 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=62.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCC-hHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge-~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
..+++|+||||||||+||.++++++ |..++.++..++...+... ......+.+. .-.++.+|+|||++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~------~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIA------KLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHH------HHhcCCEEEEeccccc
Confidence 4579999999999999999999765 7777777776654422100 0000111111 1356789999999765
Q ss_pred cCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC
Q 018745 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (351)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~ 278 (351)
.... .....|.++++ .. ..+.++|+|||.+
T Consensus 180 ~~~~-----------~~~~~Lf~lin--------~R-----~~~~s~IiTSN~~ 209 (269)
T PRK08181 180 TKDQ-----------AETSVLFELIS--------AR-----YERRSILITANQP 209 (269)
T ss_pred cCCH-----------HHHHHHHHHHH--------HH-----HhCCCEEEEcCCC
Confidence 4321 12345556665 22 1124899999975
No 156
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.96 E-value=6.5e-09 Score=113.53 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=95.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC-----CCCChHHHH----HHHHHHHHHHHHhCCceEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMCCL 216 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~-----~~Ge~~~~i----r~~f~~A~~~~~~~~p~IL 216 (351)
...+||+||+|||||++|+++|..+ +.+++.++++++.+. +.|.+...+ ...+..+ ++....+||
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~---v~~~p~~vl 671 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEA---VRRKPYSVV 671 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHH---HHcCCCcEE
Confidence 3569999999999999999999987 457888887765332 111111000 0011111 245556899
Q ss_pred EecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCC----------------
Q 018745 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST---------------- 280 (351)
Q Consensus 217 ~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~---------------- 280 (351)
+|||||.+. ..+...|++++++-... ++........+.+||+|||....
T Consensus 672 llDeieka~-------------~~v~~~Ll~~l~~g~l~--d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~ 736 (852)
T TIGR03346 672 LFDEVEKAH-------------PDVFNVLLQVLDDGRLT--DGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMRE 736 (852)
T ss_pred EEeccccCC-------------HHHHHHHHHHHhcCcee--cCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHH
Confidence 999998643 22456677777632111 11111123467889999997322
Q ss_pred ---------CcchhccCCcceEEEeC--CCHHHHHHHHHHhhc-------C----CCCCHHHHHHHhc
Q 018745 281 ---------LYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFR-------N----DNVADDDIVKLVD 326 (351)
Q Consensus 281 ---------Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~-------~----~~~~~~~l~~l~~ 326 (351)
+.|.|+ .|+|..+.. ++.++..+|+...+. . -.++.+.+..+++
T Consensus 737 ~~~~~~~~~F~pel~--~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~ 802 (852)
T TIGR03346 737 AVMEVLRAHFRPEFL--NRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAE 802 (852)
T ss_pred HHHHHHHhhcCHHHh--cCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHH
Confidence 234555 588876664 888888888554442 1 1345666666665
No 157
>PRK09087 hypothetical protein; Validated
Probab=98.95 E-value=6.1e-09 Score=96.82 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=83.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 229 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~ 229 (351)
.-++||||+|||||+|++++|+..+.. .++...+. .+.+... ...+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~-----------~~~~~~~-------~~~~l~iDDi~~~~~--- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG-----------SDAANAA-------AEGPVLIEDIDAGGF--- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc-----------hHHHHhh-------hcCeEEEECCCCCCC---
Confidence 358999999999999999999887654 33322111 1111111 125899999986521
Q ss_pred CCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCC-CCC---CcchhccCCcce--EEEeC--CCHH
Q 018745 230 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FST---LYAPLIRDGRME--KFYWA--PTRE 301 (351)
Q Consensus 230 ~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~-~~~---Ld~aLlR~gRfd--~~i~~--P~~e 301 (351)
.+ ..|.++++ .. ...+.++|+|++. |.. ..+.|+- |+. ..+.+ |+.+
T Consensus 102 --~~---------~~lf~l~n--------~~----~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e 156 (226)
T PRK09087 102 --DE---------TGLFHLIN--------SV----RQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDA 156 (226)
T ss_pred --CH---------HHHHHHHH--------HH----HhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHH
Confidence 11 12333333 11 1223456766664 332 3455653 553 44554 9999
Q ss_pred HHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCccccc
Q 018745 302 DRIGVCKGIFRND--NVADDDIVKLVDTFPGQSIGKFP 337 (351)
Q Consensus 302 ~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dldf~g 337 (351)
+|.+|+++.+... .++.+.+.-++..+.+.--...+
T Consensus 157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 157 LLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHH
Confidence 9999999998765 45567777777776654333333
No 158
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.94 E-value=3.2e-09 Score=101.91 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=77.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC------------------------CccEEeccCccccCCCCChHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMG------------------------INPIMMSAGELESGNAGEPAKLIRQRYR 202 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg------------------------~~~i~vs~s~l~s~~~Ge~~~~ir~~f~ 202 (351)
+.|..+||+||||+|||++|.++|+++. -.++.++++...... .....++++-.
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHH
Confidence 5566899999999999999999999987 355666665443221 11222333222
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCc
Q 018745 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (351)
Q Consensus 203 ~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld 282 (351)
.....-..+..-|++|||+|.+-.. ....|+..+. .+..+.++|++||+++.+-
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~-------------A~nallk~lE-------------ep~~~~~~il~~n~~~~il 153 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED-------------AANALLKTLE-------------EPPKNTRFILITNDPSKIL 153 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHHHhc-------------cCCCCeEEEEEcCChhhcc
Confidence 2200001256789999999976532 1233344444 4567789999999999999
Q ss_pred chhccCCcceEEEeCC
Q 018745 283 APLIRDGRMEKFYWAP 298 (351)
Q Consensus 283 ~aLlR~gRfd~~i~~P 298 (351)
+++.. |+-.+...|
T Consensus 154 ~tI~S--Rc~~i~f~~ 167 (325)
T COG0470 154 PTIRS--RCQRIRFKP 167 (325)
T ss_pred chhhh--cceeeecCC
Confidence 98875 444433333
No 159
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.93 E-value=1.9e-09 Score=104.68 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHH--HHHHHH-hCCceEEEeccc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE--AADIIK-KGKMCCLMINDL 221 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~--A~~~~~-~~~p~IL~IDEI 221 (351)
...|++||||+|||||+|+.|+|+++ |..+..+..+++...+ +..+.. ..+.+. -.+..+|+||||
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l--------k~~~~~~~~~~~l~~l~~~dlLiIDDi 226 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL--------KNSISDGSVKEKIDAVKEAPVLMLDDI 226 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH--------HHHHhcCcHHHHHHHhcCCCEEEEecC
Confidence 45799999999999999999999998 7777777776654321 111110 011112 356789999999
Q ss_pred cc
Q 018745 222 DA 223 (351)
Q Consensus 222 D~ 223 (351)
.+
T Consensus 227 G~ 228 (306)
T PRK08939 227 GA 228 (306)
T ss_pred CC
Confidence 54
No 160
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.91 E-value=3e-10 Score=101.85 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=44.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
+...+++|+||||||||+||.+|++++ |..+..++..+|.+...... .....+.+.. -.+..+|+|||+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~------l~~~dlLilDDlG 118 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR------LKRVDLLILDDLG 118 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH------HHTSSCEEEETCT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc------cccccEecccccc
Confidence 456799999999999999999999876 78888888877753221100 0001111111 2456899999994
No 161
>PRK06526 transposase; Provisional
Probab=98.88 E-value=9.3e-10 Score=104.09 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=45.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCC-hHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge-~~~~ir~~f~~A~~~~~~~~p~IL~IDEID 222 (351)
+.+.+++|+||||||||+||.+|+.++ |..+...+..++....... ....+... +.....+.+|+|||++
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~------l~~l~~~dlLIIDD~g 169 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAE------LVKLGRYPLLIVDEVG 169 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHH------HHHhccCCEEEEcccc
Confidence 345689999999999999999998875 6666555555443221100 00001111 1123467899999997
Q ss_pred ccc
Q 018745 223 AGA 225 (351)
Q Consensus 223 ~l~ 225 (351)
...
T Consensus 170 ~~~ 172 (254)
T PRK06526 170 YIP 172 (254)
T ss_pred cCC
Confidence 654
No 162
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.87 E-value=3.1e-08 Score=108.20 Aligned_cols=160 Identities=14% Similarity=0.209 Sum_probs=93.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCC-----CCChHHH----HHHHHHHHHHHHHhCCceEEE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN-----AGEPAKL----IRQRYREAADIIKKGKMCCLM 217 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~-----~Ge~~~~----ir~~f~~A~~~~~~~~p~IL~ 217 (351)
..+||+||+|||||++|+++|+.+ +.+++.++++++.... .|.+... -...+..+ ++....++|+
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~---v~~~p~~vLl 675 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEA---VRRRPYSVIL 675 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHH---HHhCCCCeEE
Confidence 368999999999999999999987 4467777777653311 1111000 00111122 2344558999
Q ss_pred ecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC------------------
Q 018745 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS------------------ 279 (351)
Q Consensus 218 IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~------------------ 279 (351)
|||+|.+. ..+...|++++++-... ++........+.+||+|||...
T Consensus 676 lDEieka~-------------~~v~~~Ll~ile~g~l~--d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~ 740 (857)
T PRK10865 676 LDEVEKAH-------------PDVFNILLQVLDDGRLT--DGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKEL 740 (857)
T ss_pred EeehhhCC-------------HHHHHHHHHHHhhCcee--cCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHH
Confidence 99997543 22455677777632110 1111112345678999999731
Q ss_pred -------CCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcC-----------CCCCHHHHHHHhc-CCC
Q 018745 280 -------TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRN-----------DNVADDDIVKLVD-TFP 329 (351)
Q Consensus 280 -------~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~-----------~~~~~~~l~~l~~-gf~ 329 (351)
.+.|+|+ .|+|..+.. ++.++..+|++.++.. -.++.+.+..+++ +|+
T Consensus 741 ~~~~~~~~f~PELl--nRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~ 809 (857)
T PRK10865 741 VLGVVSHNFRPEFI--NRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYD 809 (857)
T ss_pred HHHHHcccccHHHH--HhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCC
Confidence 2345666 488766663 7788777775544422 1345666666664 454
No 163
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.7e-08 Score=106.48 Aligned_cols=145 Identities=9% Similarity=0.114 Sum_probs=88.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEec---cC--------------cc--ccCCCCChHHHHHHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS---AG--------------EL--ESGNAGEPAKLIRQRYREAAD 206 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs---~s--------------~l--~s~~~Ge~~~~ir~~f~~A~~ 206 (351)
.+.|..+|||||+|+|||++|+++|+.+.+...... ++ ++ .+.........++++...+..
T Consensus 36 ~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~ 115 (614)
T PRK14971 36 NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRI 115 (614)
T ss_pred CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhh
Confidence 467889999999999999999999999864211000 00 00 000001123446655555411
Q ss_pred HHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhc
Q 018745 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (351)
Q Consensus 207 ~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLl 286 (351)
.-..+...|++|||+|.+.. .....|+..++ .......+|++|+....|.++++
T Consensus 116 ~P~~~~~KVvIIdea~~Ls~-------------~a~naLLK~LE-------------epp~~tifIL~tt~~~kIl~tI~ 169 (614)
T PRK14971 116 PPQIGKYKIYIIDEVHMLSQ-------------AAFNAFLKTLE-------------EPPSYAIFILATTEKHKILPTIL 169 (614)
T ss_pred CcccCCcEEEEEECcccCCH-------------HHHHHHHHHHh-------------CCCCCeEEEEEeCCchhchHHHH
Confidence 11134566999999986631 12345666666 22344567777777889999887
Q ss_pred cCCcceEEEeCCCHHHHHHHHHHhhcCCCCC
Q 018745 287 RDGRMEKFYWAPTREDRIGVCKGIFRNDNVA 317 (351)
Q Consensus 287 R~gRfd~~i~~P~~e~R~~Il~~~~~~~~~~ 317 (351)
.++.. ..+.-++.++-...+..++...++.
T Consensus 170 SRc~i-v~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 170 SRCQI-FDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred hhhhe-eecCCCCHHHHHHHHHHHHHHcCCC
Confidence 64331 2222388888888888877766664
No 164
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=3.7e-08 Score=96.50 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=89.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE----------------eccCcc--cc-CCCC--ChHHHHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------------MSAGEL--ES-GNAG--EPAKLIRQRYREA 204 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~----------------vs~s~l--~s-~~~G--e~~~~ir~~f~~A 204 (351)
.+.|..+||+||+|+|||++|+++|+.+.+.--. -+..++ .. ...+ -....+|++-..+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999999998652100 000011 00 0001 1235566665555
Q ss_pred HHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcch
Q 018745 205 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (351)
Q Consensus 205 ~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~a 284 (351)
..--..+...|++|||+|.+-. .....|+..++ ++..++.+|.+|++++.|.|.
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~-------------~aaNaLLK~LE-------------EPp~~~~fiL~t~~~~~ll~T 152 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR-------------NAANALLKSLE-------------EPSGDTVLLLISHQPSRLLPT 152 (328)
T ss_pred hhccccCCCeEEEECChhhCCH-------------HHHHHHHHHHh-------------CCCCCeEEEEEECChhhCcHH
Confidence 2222245677999999987532 22345666666 345678899999999999998
Q ss_pred hccCCcceEEEe-CCCHHHHHHHHHHhh
Q 018745 285 LIRDGRMEKFYW-APTREDRIGVCKGIF 311 (351)
Q Consensus 285 LlR~gRfd~~i~-~P~~e~R~~Il~~~~ 311 (351)
++. |+-.+.. .|+.++-.+.+....
T Consensus 153 I~S--Rc~~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 153 IKS--RCQQQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred HHh--hceeeeCCCcCHHHHHHHHHHhc
Confidence 875 5555333 388888777776543
No 165
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2e-08 Score=99.73 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=91.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc-----cEEeccCccccCC---------------CCChHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAGELESGN---------------AGEPAKLIRQRYREA 204 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~-----~i~vs~s~l~s~~---------------~Ge~~~~ir~~f~~A 204 (351)
....|..+++|||||||||..++.+++++... ++.+++-.+...+ .|.+ ..+.|...
T Consensus 38 ~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~---~~~~~~~l 114 (366)
T COG1474 38 RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDS---SLEILKRL 114 (366)
T ss_pred cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCc---hHHHHHHH
Confidence 34456679999999999999999999998544 7888887653321 1111 12233333
Q ss_pred HHHHH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC---C
Q 018745 205 ADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---T 280 (351)
Q Consensus 205 ~~~~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~---~ 280 (351)
.+.+. .....||++||+|.+..+.+ ..|++|+..++ ....++.+|+.+|+.+ .
T Consensus 115 ~~~~~~~~~~~IvvLDEid~L~~~~~-------------~~LY~L~r~~~----------~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 115 YDNLSKKGKTVIVILDEVDALVDKDG-------------EVLYSLLRAPG----------ENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHhcCCeEEEEEcchhhhccccc-------------hHHHHHHhhcc----------ccceeEEEEEEeccHHHHHH
Confidence 33333 46778999999999987643 34555555221 1157789999999874 6
Q ss_pred CcchhccCCcceE-EEeCCCHHHHHHHHHHhhc
Q 018745 281 LYAPLIRDGRMEK-FYWAPTREDRIGVCKGIFR 312 (351)
Q Consensus 281 Ld~aLlR~gRfd~-~i~~P~~e~R~~Il~~~~~ 312 (351)
+||-+...-.... .+.--+.+|...|++.-..
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 7777665333333 2223788888999765543
No 166
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=4.9e-08 Score=96.95 Aligned_cols=139 Identities=15% Similarity=0.128 Sum_probs=85.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccE-----------Ee--c-------------cCcc--ccC---CCC--
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-----------MM--S-------------AGEL--ESG---NAG-- 191 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i-----------~v--s-------------~s~l--~s~---~~G-- 191 (351)
..+.|..+||+||+|+||+++|.++|+.+-+.-- .+ . ..++ +.. ..+
T Consensus 37 ~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~ 116 (365)
T PRK07471 37 SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKR 116 (365)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccc
Confidence 3477899999999999999999999998843210 00 0 0000 000 000
Q ss_pred ----ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCC
Q 018745 192 ----EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (351)
Q Consensus 192 ----e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~ 267 (351)
-....+|++-..+......+.+.|++|||+|.+-. .....|+..++ ....
T Consensus 117 ~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~-------------~aanaLLK~LE-------------epp~ 170 (365)
T PRK07471 117 LRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA-------------NAANALLKVLE-------------EPPA 170 (365)
T ss_pred ccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------------HHHHHHHHHHh-------------cCCC
Confidence 01233555444432111256788999999986521 22335566666 3345
Q ss_pred CceEEEEeCCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHhh
Q 018745 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIF 311 (351)
Q Consensus 268 ~v~II~TTN~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~ 311 (351)
+..+|++|++++.+.+.++. |+...-. -|+.++-.+++....
T Consensus 171 ~~~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred CeEEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhc
Confidence 66788999999999877654 5554333 388888888887654
No 167
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=2.1e-07 Score=92.06 Aligned_cols=148 Identities=13% Similarity=0.063 Sum_probs=87.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCcc------EEe--cc--------------Ccc--c-cCC-C--C-----
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP------IMM--SA--------------GEL--E-SGN-A--G----- 191 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~------i~v--s~--------------s~l--~-s~~-~--G----- 191 (351)
..+.|..+||+||+|+|||++|+.+|+.+.... ... .+ .++ . ... . +
T Consensus 41 ~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~ 120 (351)
T PRK09112 41 EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTA 120 (351)
T ss_pred cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeeccccccccccccc
Confidence 457788999999999999999999999986521 100 00 000 0 000 0 0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceE
Q 018745 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (351)
Q Consensus 192 e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~I 271 (351)
-+...+|++-.........+...|++|||+|.+-. .....|+..++ .+..+..+
T Consensus 121 I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~-------------~aanaLLk~LE-------------Epp~~~~f 174 (351)
T PRK09112 121 ITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR-------------NAANAILKTLE-------------EPPARALF 174 (351)
T ss_pred CCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-------------HHHHHHHHHHh-------------cCCCCceE
Confidence 01233444333321111245677999999987632 11234555666 33455677
Q ss_pred EEEeCCCCCCcchhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCCCHHHH
Q 018745 272 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDI 321 (351)
Q Consensus 272 I~TTN~~~~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~~~~~l 321 (351)
|+.|+.++.+.|.++. |+- .+.+ |+.++-.+++.......+++.+.+
T Consensus 175 iLit~~~~~llptIrS--Rc~-~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~ 223 (351)
T PRK09112 175 ILISHSSGRLLPTIRS--RCQ-PISLKPLDDDELKKALSHLGSSQGSDGEIT 223 (351)
T ss_pred EEEECChhhccHHHHh--hcc-EEEecCCCHHHHHHHHHHhhcccCCCHHHH
Confidence 7778889999877754 553 4443 899998888877543333444433
No 168
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=1.2e-07 Score=91.92 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=91.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc--cCCCCC--hHHHHHHHHHHHHHHHHhCCceEEEecc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE--SGNAGE--PAKLIRQRYREAADIIKKGKMCCLMIND 220 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~--s~~~Ge--~~~~ir~~f~~A~~~~~~~~p~IL~IDE 220 (351)
..+.|..+||+||+|+|||++|+++|+.+-+....-...++. ....|. ....+|++-..+...-..+...|++|||
T Consensus 22 ~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ 101 (313)
T PRK05564 22 KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYN 101 (313)
T ss_pred cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEec
Confidence 346788999999999999999999999874321110111110 000111 2234665555442111245667999999
Q ss_pred cccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC--C
Q 018745 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--P 298 (351)
Q Consensus 221 ID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~--P 298 (351)
+|.+-. .....|+..++ .+..++.+|.+|++++.+.|.++. |+. .+.. |
T Consensus 102 ad~m~~-------------~a~naLLK~LE-------------epp~~t~~il~~~~~~~ll~TI~S--Rc~-~~~~~~~ 152 (313)
T PRK05564 102 SEKMTE-------------QAQNAFLKTIE-------------EPPKGVFIILLCENLEQILDTIKS--RCQ-IYKLNRL 152 (313)
T ss_pred hhhcCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEeCChHhCcHHHHh--hce-eeeCCCc
Confidence 976521 12345666666 335567788888889999998875 443 3443 7
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHh
Q 018745 299 TREDRIGVCKGIFRNDNVADDDIVKLV 325 (351)
Q Consensus 299 ~~e~R~~Il~~~~~~~~~~~~~l~~l~ 325 (351)
+.++....+...+. +++.+.+..++
T Consensus 153 ~~~~~~~~l~~~~~--~~~~~~~~~l~ 177 (313)
T PRK05564 153 SKEEIEKFISYKYN--DIKEEEKKSAI 177 (313)
T ss_pred CHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 88887777766543 45555444443
No 169
>PRK09183 transposase/IS protein; Provisional
Probab=98.76 E-value=6.6e-09 Score=98.49 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=46.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCC-hHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDL 221 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge-~~~~ir~~f~~A~~~~~~~~p~IL~IDEI 221 (351)
++....++|+||||||||+|+.+++.++ |..+..++..++...+... ....+...+... ...+.+|+|||+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdl 173 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEI 173 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-----hcCCCEEEEccc
Confidence 3445689999999999999999998764 6666666655543221100 000111222221 356789999999
Q ss_pred cccc
Q 018745 222 DAGA 225 (351)
Q Consensus 222 D~l~ 225 (351)
+...
T Consensus 174 g~~~ 177 (259)
T PRK09183 174 GYLP 177 (259)
T ss_pred ccCC
Confidence 7543
No 170
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.4e-07 Score=91.62 Aligned_cols=101 Identities=22% Similarity=0.276 Sum_probs=71.3
Q ss_pred CCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEe----CCCCCCcchhc
Q 018745 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG----NDFSTLYAPLI 286 (351)
Q Consensus 211 ~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TT----N~~~~Ld~aLl 286 (351)
.+..|+||||||+++.+.+ .....+...-+++-|+-+.+..+-. --++......+++|++. ..|++|-|.|-
T Consensus 249 E~~GIvFIDEIDKIa~~~~-~g~~dvSREGVQRDlLPlvEGstV~---TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ 324 (444)
T COG1220 249 EQNGIVFIDEIDKIAKRGG-SGGPDVSREGVQRDLLPLVEGSTVS---TKYGPVKTDHILFIASGAFHVAKPSDLIPELQ 324 (444)
T ss_pred HhcCeEEEehhhHHHhcCC-CCCCCcchhhhcccccccccCceee---ccccccccceEEEEecCceecCChhhcChhhc
Confidence 3566999999999998764 2223666677777777776633222 22444677888999875 46888989886
Q ss_pred cCCcceEEEeC--CCHHHHHHHH-----------HHhhcCCCCC
Q 018745 287 RDGRMEKFYWA--PTREDRIGVC-----------KGIFRNDNVA 317 (351)
Q Consensus 287 R~gRfd~~i~~--P~~e~R~~Il-----------~~~~~~~~~~ 317 (351)
|||-..+++ .+.++-..|| ..+++.++++
T Consensus 325 --GRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~ 366 (444)
T COG1220 325 --GRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVE 366 (444)
T ss_pred --CCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCee
Confidence 899999997 8888877774 4455666655
No 171
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.72 E-value=2.1e-08 Score=98.47 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=51.7
Q ss_pred CceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCc-cccCCCCcccCCCCCceEEEEeCCCC-CCcchhccCC
Q 018745 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRDG 289 (351)
Q Consensus 212 ~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~~~l~~~~~~~~~~~v~II~TTN~~~-~Ld~aLlR~g 289 (351)
...+|||||++.+.. .++..|++.++.-. .+...+. ......++.+|+|+|..+ .++++++.
T Consensus 128 ~~GiL~lDEInrl~~-------------~~q~~Lle~mee~~v~v~r~G~-~~~~p~rfiviAt~NP~e~~l~~aLld-- 191 (334)
T PRK13407 128 NRGYLYIDEVNLLED-------------HIVDLLLDVAQSGENVVEREGL-SIRHPARFVLVGSGNPEEGELRPQLLD-- 191 (334)
T ss_pred CCCeEEecChHhCCH-------------HHHHHHHHHHHcCCeEEEECCe-EEecCCCEEEEecCCcccCCCCHHHHh--
Confidence 346999999976432 23445566655221 1111221 112245677888888644 58888885
Q ss_pred cceEEEeC--CCH-HHHHHHHHHhh
Q 018745 290 RMEKFYWA--PTR-EDRIGVCKGIF 311 (351)
Q Consensus 290 Rfd~~i~~--P~~-e~R~~Il~~~~ 311 (351)
||...+.+ |.. ++|.+|++...
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 88888887 444 88999987643
No 172
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.71 E-value=5.3e-08 Score=96.03 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=51.7
Q ss_pred CceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCc-cccCCCCcccCCCCCceEEEEeCCCC-CCcchhccCC
Q 018745 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRDG 289 (351)
Q Consensus 212 ~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~~~l~~~~~~~~~~~v~II~TTN~~~-~Ld~aLlR~g 289 (351)
...+||+||++.+.. .++..|++.++.-. .+.-.+.. .....++.+|+|.|..+ .+.++++.
T Consensus 144 ~~GiL~lDEInrL~~-------------~~Q~~LLeam~e~~~~ier~G~s-~~~p~rfiviaT~np~eg~l~~~Lld-- 207 (350)
T CHL00081 144 NRGILYVDEVNLLDD-------------HLVDILLDSAASGWNTVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD-- 207 (350)
T ss_pred CCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEeeCCee-eecCCCEEEEeccCcccCCCCHHHHH--
Confidence 457999999976542 23444566655211 00001111 12245677777777555 58888886
Q ss_pred cceEEEeC--CC-HHHHHHHHHHhh
Q 018745 290 RMEKFYWA--PT-REDRIGVCKGIF 311 (351)
Q Consensus 290 Rfd~~i~~--P~-~e~R~~Il~~~~ 311 (351)
||...+.+ |+ .+.+.+|+++..
T Consensus 208 Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 208 RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred HhCceeecCCCCChHHHHHHHHhhh
Confidence 78888776 66 699999987753
No 173
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.3e-08 Score=106.56 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=94.1
Q ss_pred CCCCCCC-cEEEEEcCCCccHHHHHHHHHHHhC---CccEEeccCccccC-----CCCChHHHH----HHHHHHHHHHHH
Q 018745 143 LPNIKVP-LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIK 209 (351)
Q Consensus 143 ~~~~~~p-~glLL~GppGtGKT~LA~aIA~~lg---~~~i~vs~s~l~s~-----~~Ge~~~~i----r~~f~~A~~~~~ 209 (351)
+..-..| ...||.||+|+|||.||+++|..+. ..++.++.|++..+ ..|.++..+ ...+.+| ++
T Consensus 514 L~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEa---VR 590 (786)
T COG0542 514 LGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEA---VR 590 (786)
T ss_pred CCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHh---hh
Confidence 3344455 4678899999999999999999996 78999999988532 222222111 0111222 35
Q ss_pred hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC----------
Q 018745 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---------- 279 (351)
Q Consensus 210 ~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~---------- 279 (351)
+...|||+||||++-.+ -+...|++++|+=. .-++.-+.....+.+||+|||--.
T Consensus 591 r~PySViLlDEIEKAHp-------------dV~nilLQVlDdGr--LTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~ 655 (786)
T COG0542 591 RKPYSVILLDEIEKAHP-------------DVFNLLLQVLDDGR--LTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGD 655 (786)
T ss_pred cCCCeEEEechhhhcCH-------------HHHHHHHHHhcCCe--eecCCCCEEecceeEEEEecccchHHHHhhcccc
Confidence 66689999999975332 24567788888321 111112234567889999999421
Q ss_pred ------------------CCcchhccCCcceEEEeC--CCHHHHHHHHHHhh
Q 018745 280 ------------------TLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIF 311 (351)
Q Consensus 280 ------------------~Ld~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~ 311 (351)
...|+++ .|+|..|.. .+.+...+|+..++
T Consensus 656 ~~~~~~~~~~~v~~~l~~~F~PEFL--NRid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 656 DFADKEALKEAVMEELKKHFRPEFL--NRIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred ccchhhhHHHHHHHHHHhhCCHHHH--hhcccEEeccCCCHHHHHHHHHHHH
Confidence 1244555 478866653 77777888865554
No 174
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.70 E-value=7.3e-08 Score=91.20 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHH---HHHHHH-hCCceEEEecc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE---AADIIK-KGKMCCLMIND 220 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~---A~~~~~-~~~p~IL~IDE 220 (351)
.+.+++|+||||+|||+||.||++++ |+.++.+..+++... +...|.. ..++.+ -.+..+|||||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~--------Lk~~~~~~~~~~~l~~~l~~~dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK--------LKAAFDEGRLEEKLLRELKKVDLLIIDD 175 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--------HHHHHhcCchHHHHHHHhhcCCEEEEec
Confidence 67799999999999999999999987 788888888877542 2223321 112223 45678999999
Q ss_pred ccc
Q 018745 221 LDA 223 (351)
Q Consensus 221 ID~ 223 (351)
|-.
T Consensus 176 lG~ 178 (254)
T COG1484 176 IGY 178 (254)
T ss_pred ccC
Confidence 943
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=2.6e-07 Score=97.58 Aligned_cols=81 Identities=21% Similarity=0.156 Sum_probs=48.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE-eccCc-------------cccCC--CCChHHHHHHHHHHHHHHH--
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGE-------------LESGN--AGEPAKLIRQRYREAADII-- 208 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~-vs~s~-------------l~s~~--~Ge~~~~ir~~f~~A~~~~-- 208 (351)
.....++|+||||||||++++++|++++..++. .+... +.+.+ .....+.++.....+....
T Consensus 108 ~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~ 187 (637)
T TIGR00602 108 APKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQM 187 (637)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcc
Confidence 334679999999999999999999999876533 11110 00000 0112233444444442111
Q ss_pred ----HhCCceEEEecccccccCC
Q 018745 209 ----KKGKMCCLMINDLDAGAGR 227 (351)
Q Consensus 209 ----~~~~p~IL~IDEID~l~~~ 227 (351)
...+..||||||||.+..+
T Consensus 188 ~g~~~~~~~~IILIDEiPn~~~r 210 (637)
T TIGR00602 188 LGDDLMTDKKIILVEDLPNQFYR 210 (637)
T ss_pred cccccCCceeEEEeecchhhchh
Confidence 0245679999999987643
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.1e-07 Score=101.44 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=94.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHh----------CCccEEeccCccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEEEec
Q 018745 152 LGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLMIN 219 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~ID 219 (351)
-+|.|+||+|||.+++-+|... +..++.++.+.+. .+|-|+-+..++.+..+. .+..+.|||||
T Consensus 194 PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev----~~~~~vILFID 269 (786)
T COG0542 194 PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEV----EKSKNVILFID 269 (786)
T ss_pred CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHH----hcCCCeEEEEe
Confidence 3678999999999999999875 4556777777775 468899999999888887 65669999999
Q ss_pred ccccccCCCCCCc-cchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCC-----CCCCcchhccCCcceE
Q 018745 220 DLDAGAGRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-----FSTLYAPLIRDGRMEK 293 (351)
Q Consensus 220 EID~l~~~r~~~~-~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~-----~~~Ld~aLlR~gRfd~ 293 (351)
||..+.+.-.... ..... -++..+ -.+..+-+|++|.. .=.-|+||-| ||-.
T Consensus 270 EiHtiVGAG~~~G~a~DAa-NiLKPa-------------------LARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ~ 327 (786)
T COG0542 270 EIHTIVGAGATEGGAMDAA-NLLKPA-------------------LARGELRCIGATTLDEYRKYIEKDAALER--RFQK 327 (786)
T ss_pred chhhhcCCCcccccccchh-hhhHHH-------------------HhcCCeEEEEeccHHHHHHHhhhchHHHh--cCce
Confidence 9999887643111 11111 111111 11344567776653 2246999999 7777
Q ss_pred EEeC-CCHHHHHHHHHHhh
Q 018745 294 FYWA-PTREDRIGVCKGIF 311 (351)
Q Consensus 294 ~i~~-P~~e~R~~Il~~~~ 311 (351)
.+.- |+.++-..|++.+-
T Consensus 328 V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 328 VLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred eeCCCCCHHHHHHHHHHHH
Confidence 5553 99999999987764
No 177
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.66 E-value=8.7e-08 Score=101.58 Aligned_cols=143 Identities=20% Similarity=0.189 Sum_probs=82.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC-----------------------------------CccEEeccCccccCCCCChH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMG-----------------------------------INPIMMSAGELESGNAGEPA 194 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg-----------------------------------~~~i~vs~s~l~s~~~Ge~~ 194 (351)
.+|||+||||||||++|+++++.+- .+|+.+..+...+..+|.-
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~- 104 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSL- 104 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcc-
Confidence 5799999999999999999998871 3444444433333333321
Q ss_pred HHHHHHHHHH-----HHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCc-cccCCCCcccCCCCC
Q 018745 195 KLIRQRYREA-----ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPR 268 (351)
Q Consensus 195 ~~ir~~f~~A-----~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~~~l~~~~~~~~~~~ 268 (351)
.+...+... ...+......+||||||+.+.. .++..|++.++.-. .+.-.+. ......+
T Consensus 105 -d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------------~~q~~Ll~~le~g~~~v~r~g~-~~~~~~~ 169 (633)
T TIGR02442 105 -DIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------------HLVDVLLDAAAMGVNRVEREGL-SVSHPAR 169 (633)
T ss_pred -cHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH-------------HHHHHHHHHHhcCCEEEEECCc-eeeecCC
Confidence 011111100 0111122446999999976542 23445666665221 1111111 1122466
Q ss_pred ceEEEEeCCC-CCCcchhccCCcceEEEeC---CCHHHHHHHHHHh
Q 018745 269 VPIIVTGNDF-STLYAPLIRDGRMEKFYWA---PTREDRIGVCKGI 310 (351)
Q Consensus 269 v~II~TTN~~-~~Ld~aLlR~gRfd~~i~~---P~~e~R~~Il~~~ 310 (351)
+.+|+|+|.. ..+.++|+. ||+..+.+ .+.+++.+|++..
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 8899999954 367788885 88888886 3567788887654
No 178
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.65 E-value=5e-08 Score=102.55 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=87.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC--ccEEeccCccccCCCCChHHHHHHHHHHH-----HHHHHhCCceEEEecccc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREA-----ADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~--~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A-----~~~~~~~~p~IL~IDEID 222 (351)
.+|||.|+||||||++|+++++.+.. +|+.+..+...+...|.- .+...+... ...+.+....+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 58999999999999999999998754 477676543334444431 111111100 001112344699999997
Q ss_pred cccCCCCCCccchhhhHHHHHHHHHhhcCCccccCC--CCcccCCCCCceEEEEeCCCC---CCcchhccCCcceEEEeC
Q 018745 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP--GMYNKEENPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYWA 297 (351)
Q Consensus 223 ~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~--~~~~~~~~~~v~II~TTN~~~---~Ld~aLlR~gRfd~~i~~ 297 (351)
.+.. .++..|++.++.-. +.+. +. ......+..+|+|+|..+ .|.++|+. ||...+.+
T Consensus 95 rl~~-------------~~q~~Ll~al~~g~-v~i~r~G~-~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 95 LLDD-------------GLSNRLLQALDEGV-VIVEREGI-SVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hCCH-------------HHHHHHHHHHHcCC-eEEEECCC-ceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 6542 23455666665211 1111 11 011234567889999765 78889885 88887764
Q ss_pred ---CCHHHHHHHHHHhh
Q 018745 298 ---PTREDRIGVCKGIF 311 (351)
Q Consensus 298 ---P~~e~R~~Il~~~~ 311 (351)
|+.++|.+|++..+
T Consensus 158 ~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 158 EDVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 88888999987765
No 179
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.65 E-value=4.1e-08 Score=101.53 Aligned_cols=136 Identities=17% Similarity=0.225 Sum_probs=81.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe----ccCccccCCCCChHHHHHHHHH-----HHHHHHHhCCceEEEeccc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNAGEPAKLIRQRYR-----EAADIIKKGKMCCLMINDL 221 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v----s~s~l~s~~~Ge~~~~ir~~f~-----~A~~~~~~~~p~IL~IDEI 221 (351)
.|||+|+||||||.+|+++++......+.. ++..+.. ..+++.+. ++ ..+......+|+|||+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-------~~~~~~~~g~~~~~~-G~l~~A~~Gil~iDEi 309 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-------AVTRDPETREFTLEG-GALVLADNGVCCIDEF 309 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-------cceEccCcceEEecC-ccEEecCCCEEEEech
Confidence 699999999999999999999765432221 1111111 00111000 00 0011334579999999
Q ss_pred ccccCCCCCCccchhhhHHHHHHHHHhhcCCccccC--CCCcccCCCCCceEEEEeCCCC-------------CCcchhc
Q 018745 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL--PGMYNKEENPRVPIIVTGNDFS-------------TLYAPLI 286 (351)
Q Consensus 222 D~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l--~~~~~~~~~~~v~II~TTN~~~-------------~Ld~aLl 286 (351)
|.+... .+..|.+.++... +.+ .+. ......+..||+|+|..+ .|+++++
T Consensus 310 ~~l~~~-------------~q~~L~e~me~~~-i~i~k~G~-~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lL 374 (509)
T smart00350 310 DKMDDS-------------DRTAIHEAMEQQT-ISIAKAGI-TTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPIL 374 (509)
T ss_pred hhCCHH-------------HHHHHHHHHhcCE-EEEEeCCE-EEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHh
Confidence 876432 2334455554211 111 111 112246778999999653 5999999
Q ss_pred cCCcceEEEeC---CCHHHHHHHHHHhh
Q 018745 287 RDGRMEKFYWA---PTREDRIGVCKGIF 311 (351)
Q Consensus 287 R~gRfd~~i~~---P~~e~R~~Il~~~~ 311 (351)
. |||..+.+ |+.+...+|++.++
T Consensus 375 s--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 375 S--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred C--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 5 99998885 99999999987654
No 180
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=7e-07 Score=87.07 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=95.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCcc----------EEeccCccc--cC---CCCC------------------
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP----------IMMSAGELE--SG---NAGE------------------ 192 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~----------i~vs~s~l~--s~---~~Ge------------------ 192 (351)
.+.|..+||+||+|+||+.+|.++|+.+-..- ...+.+++. .. ..|.
T Consensus 23 ~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (314)
T PRK07399 23 NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPP 102 (314)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccc
Confidence 46678999999999999999999999874321 011111111 00 0011
Q ss_pred --hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCce
Q 018745 193 --PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (351)
Q Consensus 193 --~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~ 270 (351)
....+|++-..+...-..+...|++||++|.+-. .....|+..++ ++. +..
T Consensus 103 ~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~-------------~aaNaLLK~LE-------------EPp-~~~ 155 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE-------------AAANALLKTLE-------------EPG-NGT 155 (314)
T ss_pred cCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-------------HHHHHHHHHHh-------------CCC-CCe
Confidence 1123455444431111145678999999986521 23346666777 223 446
Q ss_pred EEEEeCCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCCH--HHHHHHhcCCCCCCc
Q 018745 271 IIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVAD--DDIVKLVDTFPGQSI 333 (351)
Q Consensus 271 II~TTN~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~~--~~l~~l~~gf~g~dl 333 (351)
+|.+|++++.|.|.++. |+-..-. -|+.++-.+++......+..+. +.+..++.|=++..+
T Consensus 156 fILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al 219 (314)
T PRK07399 156 LILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAI 219 (314)
T ss_pred EEEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHH
Confidence 78888899999999875 5544333 3888888888887654444333 455555555444443
No 181
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.63 E-value=6e-08 Score=86.25 Aligned_cols=122 Identities=17% Similarity=0.248 Sum_probs=71.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHH-----------HHHHHhCC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGK 212 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A-----------~~~~~~~~ 212 (351)
..|..|||+|++||||+++|++|.+.. ..+|+.++++.+- .+..-.++|... ...+....
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~------~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~ 93 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALP------EELLESELFGHEKGAFTGARSDKKGLLEQAN 93 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-------HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTT
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhh------cchhhhhhhccccccccccccccCCceeecc
Confidence 344679999999999999999998865 4689999998662 122334455431 02334556
Q ss_pred ceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcce
Q 018745 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292 (351)
Q Consensus 213 p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd 292 (351)
-..|||||||.+.. .++..|++++++.....+.+ ......++-||+|||.. |.. ++..|+|.
T Consensus 94 ~GtL~Ld~I~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~--~~~~~~~~RiI~st~~~--l~~-~v~~g~fr 155 (168)
T PF00158_consen 94 GGTLFLDEIEDLPP-------------ELQAKLLRVLEEGKFTRLGS--DKPVPVDVRIIASTSKD--LEE-LVEQGRFR 155 (168)
T ss_dssp TSEEEEETGGGS-H-------------HHHHHHHHHHHHSEEECCTS--SSEEE--EEEEEEESS---HHH-HHHTTSS-
T ss_pred ceEEeecchhhhHH-------------HHHHHHHHHHhhchhccccc--cccccccceEEeecCcC--HHH-HHHcCCCh
Confidence 78999999987643 23455666666322111111 11224578899999953 222 44445654
No 182
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=7.4e-07 Score=87.82 Aligned_cols=137 Identities=14% Similarity=0.162 Sum_probs=87.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE---eccC--------------cc--ccCC-----------------
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM---MSAG--------------EL--ESGN----------------- 189 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~---vs~s--------------~l--~s~~----------------- 189 (351)
.+.|.++||+||+|+||+.+|+.+|+.+.+..-. ..++ ++ ....
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 3889999999999999999999999998653210 0000 00 0000
Q ss_pred ---CC---------ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccC
Q 018745 190 ---AG---------EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 257 (351)
Q Consensus 190 ---~G---------e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l 257 (351)
.| -....+|++......-...+...|++||+.|.+-. .....|+..++
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE------- 157 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-------------AAANALLKTLE------- 157 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-------------HHHHHHHHHhc-------
Confidence 00 01234555544431111145567999999987532 22345666677
Q ss_pred CCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHh
Q 018745 258 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGI 310 (351)
Q Consensus 258 ~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~ 310 (351)
++..++.+|.+|++++.|.|.++. |+-.+.. .|+.++..+.+...
T Consensus 158 ------EPp~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 158 ------EPPPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred ------CCCcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHHc
Confidence 456788999999999999999886 5533222 38888888887653
No 183
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.60 E-value=2.8e-07 Score=94.82 Aligned_cols=178 Identities=14% Similarity=0.235 Sum_probs=111.2
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCcc--EE-----------e
Q 018745 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP--IM-----------M 180 (351)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~--i~-----------v 180 (351)
.|++++|. ..+....+|.+. ..+.+.+.||.||-|||||++||.+|+.+++.- .. +
T Consensus 14 ~F~evvGQ---------e~v~~~L~nal~--~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 14 TFDDVVGQ---------EHVVKTLSNALE--NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred cHHHhccc---------HHHHHHHHHHHH--hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 46666665 334444445443 346678999999999999999999999997752 11 1
Q ss_pred ccCcccc-----CCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccc
Q 018745 181 SAGELES-----GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 255 (351)
Q Consensus 181 s~s~l~s-----~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~ 255 (351)
..+.+.+ .-.......+|++-+++.-.-..++.-|.+|||++.+.. .....|+.-++
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-------------~afNALLKTLE----- 144 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-------------QAFNALLKTLE----- 144 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-------------HHHHHHhcccc-----
Confidence 1111100 001123355666666651111156778999999965432 12334444444
Q ss_pred cCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCC--HHHHHHHhcCCCC
Q 018745 256 QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKLVDTFPG 330 (351)
Q Consensus 256 ~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~--~~~l~~l~~gf~g 330 (351)
++...|.+|.+|..+..+++-++. |+-++-. .-+.++...-+..++..+++. .+.+..++....|
T Consensus 145 --------EPP~hV~FIlATTe~~Kip~TIlS--Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 145 --------EPPSHVKFILATTEPQKIPNTILS--RCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred --------cCccCeEEEEecCCcCcCchhhhh--ccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 446778899999999999999875 4444433 267778888888888877666 4556555555555
No 184
>PRK04132 replication factor C small subunit; Provisional
Probab=98.58 E-value=7.2e-07 Score=96.68 Aligned_cols=144 Identities=16% Similarity=0.162 Sum_probs=97.7
Q ss_pred EEEc--CCCccHHHHHHHHHHHh-----CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHh--CCceEEEeccccc
Q 018745 153 GIWG--GKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK--GKMCCLMINDLDA 223 (351)
Q Consensus 153 LL~G--ppGtGKT~LA~aIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~--~~p~IL~IDEID~ 223 (351)
+..| |++.|||++|+++|+++ +.+++.+++++.. ....+|+....+...... .+..|+||||+|.
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~ 641 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEADA 641 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECccc
Confidence 4457 89999999999999998 5679999998532 124566665554211111 1347999999997
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEe-CCCHHH
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 302 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~-~P~~e~ 302 (351)
+-. ..+..|+.+++ .+...+++|++||+++.+.++++. |+..+-. -|+.++
T Consensus 642 Lt~-------------~AQnALLk~lE-------------ep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~~ 693 (846)
T PRK04132 642 LTQ-------------DAQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDED 693 (846)
T ss_pred CCH-------------HHHHHHHHHhh-------------CCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHHH
Confidence 632 13455666666 345678999999999999999875 5544333 378888
Q ss_pred HHHHHHHhhcCCCC--CHHHHHHHhcCCCC
Q 018745 303 RIGVCKGIFRNDNV--ADDDIVKLVDTFPG 330 (351)
Q Consensus 303 R~~Il~~~~~~~~~--~~~~l~~l~~gf~g 330 (351)
-..+++.++..+++ +.+.+..++..-.|
T Consensus 694 i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 694 IAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 88888888776654 45555555443333
No 185
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.57 E-value=7.4e-08 Score=81.92 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=52.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEeccC-ccc-cCCCCChHHHHHHHHHHHHHHHH--hC--CceEEEeccccccc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-ELE-SGNAGEPAKLIRQRYREAADIIK--KG--KMCCLMINDLDAGA 225 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s-~l~-s~~~Ge~~~~ir~~f~~A~~~~~--~~--~p~IL~IDEID~l~ 225 (351)
+||+|+||+|||++|+++|+.++..|..+... ++. +...|.+ +|+....... .+ -..|+++|||....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~------v~~~~~~~f~~~~GPif~~ill~DEiNrap 75 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP------VYDQETGEFEFRPGPIFTNILLADEINRAP 75 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE------EEETTTTEEEEEE-TT-SSEEEEETGGGS-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee------eeccCCCeeEeecChhhhceeeecccccCC
Confidence 79999999999999999999999999887664 221 0000100 0000000000 00 12499999995422
Q ss_pred CCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-----CCcchhcc
Q 018745 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR 287 (351)
Q Consensus 226 ~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-----~Ld~aLlR 287 (351)
. .++++|++.+. ..++.+.+.. -.......||+|-|..+ .|+.|++-
T Consensus 76 p-------------ktQsAlLeam~-Er~Vt~~g~~-~~lp~pf~ViATqNp~e~~Gty~Lpea~~D 127 (131)
T PF07726_consen 76 P-------------KTQSALLEAME-ERQVTIDGQT-YPLPDPFFVIATQNPVEQEGTYPLPEAQLD 127 (131)
T ss_dssp H-------------HHHHHHHHHHH-HSEEEETTEE-EE--SS-EEEEEE-TT--S------HHHHT
T ss_pred H-------------HHHHHHHHHHH-cCeEEeCCEE-EECCCcEEEEEecCccccCceecCCHHHhc
Confidence 2 23455666655 1122222210 01134467888999876 66777663
No 186
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.56 E-value=1.7e-07 Score=92.10 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=52.3
Q ss_pred CCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCc-cccCCCCcccCCCCCceEEEEeCCCC-CCcchhccC
Q 018745 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRD 288 (351)
Q Consensus 211 ~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~-~~~l~~~~~~~~~~~v~II~TTN~~~-~Ld~aLlR~ 288 (351)
....+|||||++.+.. .++..|++.+++-. .+.-.+.. .....++.+|+|+|..+ .+.++|+.
T Consensus 130 A~~GvL~lDEi~~L~~-------------~~Q~~Ll~~l~~g~~~v~r~G~~-~~~~~r~iviat~np~eg~l~~~Lld- 194 (337)
T TIGR02030 130 ANRGILYIDEVNLLED-------------HLVDVLLDVAASGWNVVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD- 194 (337)
T ss_pred ccCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEEECCEE-EEcCCCEEEEeccccccCCCCHHHHh-
Confidence 4457999999986532 24455666665221 11111211 12235677888888555 68888886
Q ss_pred CcceEEEeC--CCH-HHHHHHHHHh
Q 018745 289 GRMEKFYWA--PTR-EDRIGVCKGI 310 (351)
Q Consensus 289 gRfd~~i~~--P~~-e~R~~Il~~~ 310 (351)
||...+.+ |.. ++|.+|++..
T Consensus 195 -Rf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 195 -RFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred -hcceEEECCCCCCHHHHHHHHHhh
Confidence 78887776 554 7889998763
No 187
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=2.3e-06 Score=83.85 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=82.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCcc-E-Eec--------------cCccc-cCCCCC--hHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP-I-MMS--------------AGELE-SGNAGE--PAKLIRQRYREAA 205 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~-i-~vs--------------~s~l~-s~~~Ge--~~~~ir~~f~~A~ 205 (351)
..+.|..+|||||+|+|||++|+++|+.+-..- . ... ..++. -...|. ....+|++-....
T Consensus 24 ~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~ 103 (329)
T PRK08058 24 KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFS 103 (329)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHh
Confidence 446788999999999999999999999874321 0 000 00010 000011 1234555444331
Q ss_pred HHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchh
Q 018745 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 285 (351)
Q Consensus 206 ~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aL 285 (351)
..-..+...|++|||+|.+-. .....|+..++ .+...+.+|.+|+.++.|.|++
T Consensus 104 ~~~~~~~~kvviI~~a~~~~~-------------~a~NaLLK~LE-------------EPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 104 KSGVESNKKVYIIEHADKMTA-------------SAANSLLKFLE-------------EPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred hCCcccCceEEEeehHhhhCH-------------HHHHHHHHHhc-------------CCCCCceEEEEeCChHhCcHHH
Confidence 100134567999999976531 22346677777 3356677888998999999998
Q ss_pred ccCCcceEEEe-CCCHHHHHHHHH
Q 018745 286 IRDGRMEKFYW-APTREDRIGVCK 308 (351)
Q Consensus 286 lR~gRfd~~i~-~P~~e~R~~Il~ 308 (351)
+. |+-.... -|+.++-.++++
T Consensus 158 rS--Rc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 158 LS--RCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred Hh--hceeeeCCCCCHHHHHHHHH
Confidence 75 4444333 277777766664
No 188
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.50 E-value=3e-07 Score=75.48 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCC
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
|.||||||+|||++|+.+|+.+.-
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999988753
No 189
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=1.5e-06 Score=84.92 Aligned_cols=154 Identities=15% Similarity=0.186 Sum_probs=93.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE----------e---ccCccc----c-CCCCC------hHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------M---SAGELE----S-GNAGE------PAKLIRQR 200 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~----------v---s~s~l~----s-~~~Ge------~~~~ir~~ 200 (351)
..+.|..+||+||+|+||+.+|.++|+.+.+.-.. + +..++. . ...|. ....||++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 45778899999999999999999999987542100 0 000110 0 00110 13345555
Q ss_pred HHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCC
Q 018745 201 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 280 (351)
Q Consensus 201 f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~ 280 (351)
-+.+...-..+...|++||++|.+- ......|+..++ ++..++.+|.+|+.++.
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLE-------------EPp~~~~fiL~~~~~~~ 155 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAIN-------------RAACNALLKTLE-------------EPSPGRYLWLISAQPAR 155 (319)
T ss_pred HHHHhhCcccCCcEEEEeccHhhhC-------------HHHHHHHHHHhh-------------CCCCCCeEEEEECChhh
Confidence 4443111113456799999998753 223456666777 44667889999999999
Q ss_pred CcchhccCCcceEEEe-CCCHHHHHHHHHHhhcCCCCCHH---HHHHHhcCCCC
Q 018745 281 LYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPG 330 (351)
Q Consensus 281 Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~~~~~~~~~~~---~l~~l~~gf~g 330 (351)
|.|.++. |+-..-. .|+.++-.+.+.. .+++.. .+..++.|-++
T Consensus 156 lLpTIrS--RCq~i~~~~~~~~~~~~~L~~----~~~~~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 156 LPATIRS--RCQRLEFKLPPAHEALAWLLA----QGVSERAAQEALDAARGHPG 203 (319)
T ss_pred CchHHHh--hheEeeCCCcCHHHHHHHHHH----cCCChHHHHHHHHHcCCCHH
Confidence 9998875 5555443 3788877777653 244444 34444444444
No 190
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.5e-06 Score=85.09 Aligned_cols=138 Identities=9% Similarity=0.072 Sum_probs=89.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE--ecc--------------Ccc--ccCCCC--ChHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM--MSA--------------GEL--ESGNAG--EPAKLIRQRYREA 204 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~--vs~--------------s~l--~s~~~G--e~~~~ir~~f~~A 204 (351)
..+.|.++||+||+|+||+.+|+++|+.+-+.--. -.+ .++ .....| -....+|++-..+
T Consensus 20 ~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~ 99 (325)
T PRK06871 20 QGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKV 99 (325)
T ss_pred cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHH
Confidence 34678899999999999999999999988542100 000 011 000011 1234566655544
Q ss_pred HHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcch
Q 018745 205 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (351)
Q Consensus 205 ~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~a 284 (351)
......+..-|++||++|.+- ......|+..++ ++..++.+|.+|+.++.|.|.
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~-------------~~AaNaLLKtLE-------------EPp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLT-------------EAAANALLKTLE-------------EPRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred hhccccCCceEEEEechhhhC-------------HHHHHHHHHHhc-------------CCCCCeEEEEEECChHhCchH
Confidence 221225666799999998753 223456677777 456778899999999999998
Q ss_pred hccCCcceEEEeC-CCHHHHHHHHHHh
Q 018745 285 LIRDGRMEKFYWA-PTREDRIGVCKGI 310 (351)
Q Consensus 285 LlR~gRfd~~i~~-P~~e~R~~Il~~~ 310 (351)
++. |+-.+... |+.++-.+.+...
T Consensus 154 I~S--RC~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 154 IYS--RCQTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred HHh--hceEEeCCCCCHHHHHHHHHHH
Confidence 774 55554443 7777777777654
No 191
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.46 E-value=4.2e-07 Score=90.25 Aligned_cols=31 Identities=29% Similarity=0.547 Sum_probs=27.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
....|+||+||||+|+|||+|.-+.++.+..
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 4567999999999999999999999998755
No 192
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.45 E-value=5.6e-07 Score=91.95 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=23.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
..+||+||||||||++|++++..++.
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 46999999999999999999998753
No 193
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.44 E-value=8.2e-07 Score=73.98 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=44.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh--------CCccEEeccCcccc------------CCCCChHHHHHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM--------GINPIMMSAGELES------------GNAGEPAKLIRQRYREAADII 208 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l--------g~~~i~vs~s~l~s------------~~~Ge~~~~ir~~f~~A~~~~ 208 (351)
.+.++++||||+|||++++.+++.+ ..+++.+......+ ............+++...+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4679999999999999999999987 66666665543320 000000001112222222333
Q ss_pred HhCCceEEEeccccccc
Q 018745 209 KKGKMCCLMINDLDAGA 225 (351)
Q Consensus 209 ~~~~p~IL~IDEID~l~ 225 (351)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 55555799999998754
No 194
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.44 E-value=1.4e-06 Score=81.04 Aligned_cols=170 Identities=14% Similarity=0.173 Sum_probs=89.1
Q ss_pred CCCchhHHHHHHH----HHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh-C----CccEEeccCccccCCCCC
Q 018745 122 LYIAPAFMDKLVV----HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-G----INPIMMSAGELESGNAGE 192 (351)
Q Consensus 122 ~~i~~~~~d~~~~----~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l-g----~~~i~vs~s~l~s~~~Ge 192 (351)
.|.|..+.|-+.. ...+-+....+++ .++|.||||||||+-+.|+|+++ | -.++.+++++=. .-+
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~gnmP---~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR---GID 93 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKEGNMP---NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER---GID 93 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHcCCCC---ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc---ccH
Confidence 3455555543332 2233333344443 68899999999999999999987 3 235566665321 111
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEE
Q 018745 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (351)
Q Consensus 193 ~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II 272 (351)
..++--..|..-.-.+-.++-.|+++||.|++-.. ..|-+ +-.|++-. ...-++
T Consensus 94 vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g---------AQQAl-RRtMEiyS----------------~ttRFa 147 (333)
T KOG0991|consen 94 VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG---------AQQAL-RRTMEIYS----------------NTTRFA 147 (333)
T ss_pred HHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH---------HHHHH-HHHHHHHc----------------ccchhh
Confidence 22222233443300001355679999999976421 11111 12233333 223467
Q ss_pred EEeCCCCCCcchhccCCcceEE-EeCCCHHHHHHHHHHhhcCCCCC--HHHHHHHh
Q 018745 273 VTGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVCKGIFRNDNVA--DDDIVKLV 325 (351)
Q Consensus 273 ~TTN~~~~Ld~aLlR~gRfd~~-i~~P~~e~R~~Il~~~~~~~~~~--~~~l~~l~ 325 (351)
.++|..+.+-.|+-. |+-.. |.-.+.++...-+....+.++++ .+.++.++
T Consensus 148 laCN~s~KIiEPIQS--RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii 201 (333)
T KOG0991|consen 148 LACNQSEKIIEPIQS--RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII 201 (333)
T ss_pred hhhcchhhhhhhHHh--hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh
Confidence 788888888777654 22221 11245555555555555555444 33444443
No 195
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.43 E-value=1.1e-05 Score=75.68 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
+..++|+||+|+|||++++.+++++.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44689999999999999999999875
No 196
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.42 E-value=7.5e-07 Score=87.35 Aligned_cols=134 Identities=15% Similarity=0.195 Sum_probs=77.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 213 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p 213 (351)
....|||+|++||||+++|++|.... +.+|+.++++.+-.. ..-..+|.... ..+.....
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~------~l~~~lfG~~~g~~~ga~~~~~G~~~~a~g 94 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSEN------LLDSELFGHEAGAFTGAQKRHQGRFERADG 94 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChH------HHHHHHhccccccccCcccccCCchhhCCC
Confidence 34569999999999999999998765 368999999865321 11223333210 01123356
Q ss_pred eEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC-------CCCcchhc
Q 018745 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLI 286 (351)
Q Consensus 214 ~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~-------~~Ld~aLl 286 (351)
..|||||||.+.. .++..|+.++++.....+.+. .....++.+|+|||.. ..+.+.|.
T Consensus 95 GtL~Ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~ 159 (329)
T TIGR02974 95 GTLFLDELATASL-------------LVQEKLLRVIEYGEFERVGGS--QTLQVDVRLVCATNADLPALAAEGRFRADLL 159 (329)
T ss_pred CEEEeCChHhCCH-------------HHHHHHHHHHHcCcEEecCCC--ceeccceEEEEechhhHHHHhhcCchHHHHH
Confidence 8999999987543 234455556653221111111 1223567889998853 12333343
Q ss_pred cCCcc-eEEEeCCCHHHHH
Q 018745 287 RDGRM-EKFYWAPTREDRI 304 (351)
Q Consensus 287 R~gRf-d~~i~~P~~e~R~ 304 (351)
. |+ ...+.+|.-.+|.
T Consensus 160 ~--rl~~~~i~lPpLReR~ 176 (329)
T TIGR02974 160 D--RLAFDVITLPPLRERQ 176 (329)
T ss_pred H--HhcchhcCCCchhhhh
Confidence 2 44 2345678777764
No 197
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=2.9e-06 Score=83.11 Aligned_cols=135 Identities=13% Similarity=0.164 Sum_probs=82.7
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCc-------------------------cEEeccCccccCCCC-----ChHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAG-----EPAK 195 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~-------------------------~i~vs~s~l~s~~~G-----e~~~ 195 (351)
.+.|..+||+||+|+|||++|+.+|+.+.+. ++.++...- ....| -...
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHH
Confidence 3788999999999999999999999987542 111221100 00011 1245
Q ss_pred HHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEe
Q 018745 196 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG 275 (351)
Q Consensus 196 ~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TT 275 (351)
.+|++-..+...-..+...|++||++|.+.. .....|+..++. ...++.+|++|
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-------------~a~naLLk~LEe-------------p~~~~~~Ilvt 150 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMNL-------------QAANSLLKVLEE-------------PPPQVVFLLVS 150 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCCH-------------HHHHHHHHHHHh-------------CcCCCEEEEEe
Confidence 5777665552111245667999999976532 123345555661 12346788899
Q ss_pred CCCCCCcchhccCCcceEEEe-CCCHHHHHHHHHH
Q 018745 276 NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKG 309 (351)
Q Consensus 276 N~~~~Ld~aLlR~gRfd~~i~-~P~~e~R~~Il~~ 309 (351)
++++.+.+.+.++ +-.+.. .|+.++..+.+..
T Consensus 151 h~~~~ll~ti~SR--c~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 151 HAADKVLPTIKSR--CRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CChHhChHHHHHH--hhhhcCCCCCHHHHHHHHHh
Confidence 9999999988763 333222 3777777766643
No 198
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.41 E-value=8.1e-06 Score=76.23 Aligned_cols=149 Identities=13% Similarity=0.171 Sum_probs=93.0
Q ss_pred HHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHHHHHH-hC
Q 018745 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KG 211 (351)
Q Consensus 136 i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~ 211 (351)
+.+|........+-..+||||..|||||+|++|+-++. |...+.|+..++.. +-.+++.- + ..
T Consensus 72 L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~~L----r~~~ 138 (287)
T COG2607 72 LVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVELL----RARP 138 (287)
T ss_pred HHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHHHH----hcCC
Confidence 34444444445556789999999999999999998887 55677777655421 22333332 4 56
Q ss_pred CceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhc-----
Q 018745 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI----- 286 (351)
Q Consensus 212 ~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLl----- 286 (351)
..-|||+||+- +. ...... ..|-..++ +-. .....+|++-+|+|+-+.|+.-+.
T Consensus 139 ~kFIlFcDDLS-----Fe--~gd~~y-----K~LKs~Le--------G~v-e~rP~NVl~YATSNRRHLl~e~~~dn~~~ 197 (287)
T COG2607 139 EKFILFCDDLS-----FE--EGDDAY-----KALKSALE--------GGV-EGRPANVLFYATSNRRHLLPEDMKDNEGS 197 (287)
T ss_pred ceEEEEecCCC-----CC--CCchHH-----HHHHHHhc--------CCc-ccCCCeEEEEEecCCcccccHhhhhCCCc
Confidence 67899999972 11 111111 12233344 220 122567899999999887764332
Q ss_pred ---------------cCCcceEEEeC--CCHHHHHHHHHHhhcCCCCCH
Q 018745 287 ---------------RDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD 318 (351)
Q Consensus 287 ---------------R~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~~~ 318 (351)
=..||..++-. ++.++-..|+..+.+..+++.
T Consensus 198 ~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 198 TGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 12356655543 888889999988888776663
No 199
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.40 E-value=2.8e-06 Score=74.97 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=71.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe---------------ccCccc--cCC-C--CChHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---------------SAGELE--SGN-A--GEPAKLIRQRYREA 204 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v---------------s~s~l~--s~~-~--Ge~~~~ir~~f~~A 204 (351)
..+.|..+||+||+|+||+++|.++|+.+-..-..- ...++. +.. . .-....++++...+
T Consensus 15 ~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~ 94 (162)
T PF13177_consen 15 SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFL 94 (162)
T ss_dssp CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHC
T ss_pred cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHH
Confidence 347788999999999999999999999874321110 011110 000 0 01234555555443
Q ss_pred HHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcch
Q 018745 205 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (351)
Q Consensus 205 ~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~a 284 (351)
......+..-|++|||+|.+- ......|+..++ ++..++.+|.+|++++.|.|.
T Consensus 95 ~~~~~~~~~KviiI~~ad~l~-------------~~a~NaLLK~LE-------------epp~~~~fiL~t~~~~~il~T 148 (162)
T PF13177_consen 95 SLSPSEGKYKVIIIDEADKLT-------------EEAQNALLKTLE-------------EPPENTYFILITNNPSKILPT 148 (162)
T ss_dssp TSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHH-------------STTTTEEEEEEES-GGGS-HH
T ss_pred HHHHhcCCceEEEeehHhhhh-------------HHHHHHHHHHhc-------------CCCCCEEEEEEECChHHChHH
Confidence 111114467799999998653 234456777777 446778999999999999999
Q ss_pred hccC
Q 018745 285 LIRD 288 (351)
Q Consensus 285 LlR~ 288 (351)
++.|
T Consensus 149 I~SR 152 (162)
T PF13177_consen 149 IRSR 152 (162)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 8863
No 200
>PF05729 NACHT: NACHT domain
Probab=98.38 E-value=5.5e-06 Score=71.12 Aligned_cols=145 Identities=21% Similarity=0.236 Sum_probs=74.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCc---------cEEeccCccccCCC-CChHHHHHHHHHH--------HHHHHHhC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGIN---------PIMMSAGELESGNA-GEPAKLIRQRYRE--------AADIIKKG 211 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~---------~i~vs~s~l~s~~~-Ge~~~~ir~~f~~--------A~~~~~~~ 211 (351)
+-++|+|+||+|||++++.++..+... ++............ ..-...+...+.. ....+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 358999999999999999999876211 22233322221100 0111111111111 11223356
Q ss_pred CceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcc
Q 018745 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 291 (351)
Q Consensus 212 ~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRf 291 (351)
...+|+||.+|.+...... .........|.+++. . ....++.+|+|++... .+. +.+...-
T Consensus 81 ~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~--------~----~~~~~~~liit~r~~~-~~~-~~~~~~~ 141 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLP--------Q----ALPPGVKLIITSRPRA-FPD-LRRRLKQ 141 (166)
T ss_pred CceEEEEechHhcccchhh-----hHHHHHHHHHHHHhh--------h----ccCCCCeEEEEEcCCh-HHH-HHHhcCC
Confidence 7789999999988764321 111122223334444 1 1234567777776433 211 2221112
Q ss_pred eEEEeC--CCHHHHHHHHHHhhcC
Q 018745 292 EKFYWA--PTREDRIGVCKGIFRN 313 (351)
Q Consensus 292 d~~i~~--P~~e~R~~Il~~~~~~ 313 (351)
...+.+ -+.+++.++++..++.
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 142 AQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred CcEEEECCCCHHHHHHHHHHHhhc
Confidence 234454 5888888888887753
No 201
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=2.7e-06 Score=83.60 Aligned_cols=137 Identities=13% Similarity=0.067 Sum_probs=87.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccE--EeccC--------------cc--ccCCCC---ChHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI--MMSAG--------------EL--ESGNAG---EPAKLIRQRYRE 203 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i--~vs~s--------------~l--~s~~~G---e~~~~ir~~f~~ 203 (351)
..+.|..+||+||+|+||+.+|.++|+.+-+.-- ...++ ++ .....+ -....+|++-+.
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHH
Confidence 4578899999999999999999999999854200 00011 11 000000 123456665555
Q ss_pred HHHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcc
Q 018745 204 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 283 (351)
Q Consensus 204 A~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~ 283 (351)
+...-..+...|++||+.|++- ......|+..++ ++..+..+|.+|++++.|.|
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~lLp 153 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLT-------------DAAANALLKTLE-------------EPPENTWFFLACREPARLLA 153 (334)
T ss_pred HhhccccCCceEEEEcchHhhC-------------HHHHHHHHHHhc-------------CCCCCeEEEEEECChhhChH
Confidence 4222235677899999998653 223456777777 45677889999999999999
Q ss_pred hhccCCcceEEEe-CCCHHHHHHHHHH
Q 018745 284 PLIRDGRMEKFYW-APTREDRIGVCKG 309 (351)
Q Consensus 284 aLlR~gRfd~~i~-~P~~e~R~~Il~~ 309 (351)
.++. |+-.... .|+.++..+.+..
T Consensus 154 TIrS--RCq~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 154 TLRS--RCRLHYLAPPPEQYALTWLSR 178 (334)
T ss_pred HHHh--ccccccCCCCCHHHHHHHHHH
Confidence 8875 4443322 3777777766643
No 202
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.36 E-value=1.1e-06 Score=91.35 Aligned_cols=132 Identities=11% Similarity=0.140 Sum_probs=75.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 213 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p 213 (351)
....|||+|++||||+++|++|.... +.+|+.+++..+-.. ..-..+|.... ..+.....
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 291 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET------LLESELFGHEKGAFTGAIAQRKGRFELADG 291 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH------HHHHHHcCCCCCccCCCCcCCCCcccccCC
Confidence 34569999999999999999999875 468999999866221 11122332110 00123346
Q ss_pred eEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcc--
Q 018745 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM-- 291 (351)
Q Consensus 214 ~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRf-- 291 (351)
..|||||||.+.. .++..|++++++-....+.+. .....++.+|+|||..- . .++..|+|
T Consensus 292 GtL~ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s~~~l--~-~~~~~~~f~~ 353 (534)
T TIGR01817 292 GTLFLDEIGEISP-------------AFQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAATNRDL--E-EAVAKGEFRA 353 (534)
T ss_pred CeEEEechhhCCH-------------HHHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeCCCCH--H-HHHHcCCCCH
Confidence 7899999987643 234455666652211111111 11123577888887531 1 13334444
Q ss_pred -------eEEEeCCCHHHH
Q 018745 292 -------EKFYWAPTREDR 303 (351)
Q Consensus 292 -------d~~i~~P~~e~R 303 (351)
...+.+|.-.+|
T Consensus 354 ~L~~rl~~~~i~lPpLreR 372 (534)
T TIGR01817 354 DLYYRINVVPIFLPPLRER 372 (534)
T ss_pred HHHHHhcCCeeeCCCcccc
Confidence 234667776665
No 203
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.36 E-value=1.5e-06 Score=85.03 Aligned_cols=134 Identities=15% Similarity=0.192 Sum_probs=77.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHH-----------HHHHHhCCc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKM 213 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A-----------~~~~~~~~p 213 (351)
.+..|||+|++||||+++|++|.... +.+|+.+++..+-.. ..-..+|... ...+.....
T Consensus 28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~------~~~~~lfg~~~~~~~g~~~~~~g~l~~a~g 101 (326)
T PRK11608 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN------LLDSELFGHEAGAFTGAQKRHPGRFERADG 101 (326)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH------HHHHHHccccccccCCcccccCCchhccCC
Confidence 34569999999999999999998665 358999999865211 1112233211 011123456
Q ss_pred eEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC-------CCCcchhc
Q 018745 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLI 286 (351)
Q Consensus 214 ~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~-------~~Ld~aLl 286 (351)
..|||||+|.+.. .++..|++++++.....+.+. .....++.||+||+.. ..+.+.|.
T Consensus 102 GtL~l~~i~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~ 166 (326)
T PRK11608 102 GTLFLDELATAPM-------------LVQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVAEGKFRADLL 166 (326)
T ss_pred CeEEeCChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCchhHHHHHHcCCchHHHH
Confidence 7899999987643 234455556652211111110 1113457788888763 23444444
Q ss_pred cCCcc-eEEEeCCCHHHHH
Q 018745 287 RDGRM-EKFYWAPTREDRI 304 (351)
Q Consensus 287 R~gRf-d~~i~~P~~e~R~ 304 (351)
. || ...+.+|.-.+|.
T Consensus 167 ~--~l~~~~i~lPpLReR~ 183 (326)
T PRK11608 167 D--RLAFDVVQLPPLRERQ 183 (326)
T ss_pred H--hcCCCEEECCChhhhh
Confidence 3 45 4467788877764
No 204
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.35 E-value=6.6e-06 Score=85.47 Aligned_cols=160 Identities=14% Similarity=0.189 Sum_probs=85.8
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC
Q 018745 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG 188 (351)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~ 188 (351)
.++|+++++. ++.+ .+ +.+.++.+.. ....|||+|++||||+++|++|.... ..+|+.++++.+-+.
T Consensus 200 ~~~f~~~ig~---s~~~-~~-~~~~~~~~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 200 DSAFSQIVAV---SPKM-RQ-VVEQARKLAM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred cccccceeEC---CHHH-HH-HHHHHHHHhC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 3567777765 2322 22 2333343332 23349999999999999999987654 357899998866321
Q ss_pred CCCChHHHHHHHHHHHH-----------HHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccC
Q 018745 189 NAGEPAKLIRQRYREAA-----------DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL 257 (351)
Q Consensus 189 ~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l 257 (351)
..-..+|..+. ..+.......|||||||.+... ++..|++++.+.....+
T Consensus 270 ------~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~ 330 (520)
T PRK10820 270 ------VVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRV 330 (520)
T ss_pred ------HHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccC
Confidence 11122332110 0112234678999999876432 33455556653211111
Q ss_pred CCCcccCCCCCceEEEEeCCCC-------CCcchhccCCcc-eEEEeCCCHHHHH
Q 018745 258 PGMYNKEENPRVPIIVTGNDFS-------TLYAPLIRDGRM-EKFYWAPTREDRI 304 (351)
Q Consensus 258 ~~~~~~~~~~~v~II~TTN~~~-------~Ld~aLlR~gRf-d~~i~~P~~e~R~ 304 (351)
.+. .....++.||+||+..- .+.+.|.. |+ ...+.+|.-.+|.
T Consensus 331 g~~--~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~ 381 (520)
T PRK10820 331 GED--HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRP 381 (520)
T ss_pred CCC--cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccCh
Confidence 111 11134567888887642 12222322 32 2445578777765
No 205
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.34 E-value=2.2e-06 Score=73.01 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=43.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcccc----------------------CCCCChHHHHHHHHHHHHH
Q 018745 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----------------------GNAGEPAKLIRQRYREAAD 206 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s----------------------~~~Ge~~~~ir~~f~~A~~ 206 (351)
++|+||||+|||+++..++..+ +..++.++...... ...... ........+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDP--AAARLLSKAER 79 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCC--cHHHHHHHHHH
Confidence 6899999999999999998887 44555554432211 011110 01111111222
Q ss_pred HHHhCCceEEEecccccccC
Q 018745 207 IIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 207 ~~~~~~p~IL~IDEID~l~~ 226 (351)
......+.+|+|||+..+..
T Consensus 80 ~~~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 80 LRERGGDDLIILDELTRLVR 99 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHH
Confidence 23577899999999987653
No 206
>PF13173 AAA_14: AAA domain
Probab=98.33 E-value=1.6e-06 Score=73.17 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=43.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC--CccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg--~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
+.++|+||.|||||++++.+++++. .+++.++..+.......... +.+.+.+. ....+.+|||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLEL----IKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHh----hccCCcEEEEehhhhh
Confidence 5789999999999999999999876 66777766543221000000 11111111 1236789999999754
No 207
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.1e-05 Score=78.79 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=87.1
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE-e--------------ccCcc--ccCC-CCC--hHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-M--------------SAGEL--ESGN-AGE--PAKLIRQRYREA 204 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~-v--------------s~s~l--~s~~-~Ge--~~~~ir~~f~~A 204 (351)
..+.|.++||+||.|+||+.+|+++|+.+-+.-.. . +..++ .... .|. ....+|++-..+
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~ 100 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA 100 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHH
Confidence 45778899999999999999999999987442100 0 00111 0000 011 233455554443
Q ss_pred HHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcch
Q 018745 205 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (351)
Q Consensus 205 ~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~a 284 (351)
......+...|++||++|.+- ......|+..++ ++..++.+|.+|++++.|-|.
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~lLpT 154 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMN-------------ESASNALLKTLE-------------EPAPNCLFLLVTHNQKRLLPT 154 (319)
T ss_pred hhCcccCCceEEEecchhhhC-------------HHHHHHHHHHhc-------------CCCCCeEEEEEECChhhChHH
Confidence 211124556799999998753 223456677777 456778899999999999998
Q ss_pred hccCCcceEEEe-CCCHHHHHHHHHH
Q 018745 285 LIRDGRMEKFYW-APTREDRIGVCKG 309 (351)
Q Consensus 285 LlR~gRfd~~i~-~P~~e~R~~Il~~ 309 (351)
++. |+-.+.. .|+.++..+.+..
T Consensus 155 I~S--RCq~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 155 IVS--RCQQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHh--cceeEeCCCCCHHHHHHHHHH
Confidence 775 5554333 3888887777654
No 208
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.28 E-value=2.7e-06 Score=90.32 Aligned_cols=132 Identities=13% Similarity=0.113 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHH--------HHHHhCCceEEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA--------DIIKKGKMCCLM 217 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~--------~~~~~~~p~IL~ 217 (351)
...|||+|++||||+++|++|.+.. +.+|+.+++..+-. +..-.++|.... ..+.......||
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~------~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ 421 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD------EALAEEFLGSDRTDSENGRLSKFELAHGGTLF 421 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh------HHHHHHhcCCCCcCccCCCCCceeECCCCEEE
Confidence 3459999999999999999998875 36899999876521 111223343210 011233567899
Q ss_pred ecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcc------
Q 018745 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM------ 291 (351)
Q Consensus 218 IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRf------ 291 (351)
|||||.+... ++..|+.++++.....+.+- .....++.||+|||..- ..+...|+|
T Consensus 422 ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~ 483 (638)
T PRK11388 422 LEKVEYLSPE-------------LQSALLQVLKTGVITRLDSR--RLIPVDVRVIATTTADL---AMLVEQNRFSRQLYY 483 (638)
T ss_pred EcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceEEeeEEEEEeccCCH---HHHHhcCCChHHHhh
Confidence 9999875432 33455556552211111110 01123567899888642 233444555
Q ss_pred ---eEEEeCCCHHHHH
Q 018745 292 ---EKFYWAPTREDRI 304 (351)
Q Consensus 292 ---d~~i~~P~~e~R~ 304 (351)
...+.+|.-.+|.
T Consensus 484 ~l~~~~i~lPpLreR~ 499 (638)
T PRK11388 484 ALHAFEITIPPLRMRR 499 (638)
T ss_pred hhceeEEeCCChhhhh
Confidence 4456678888874
No 209
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.24 E-value=2.7e-05 Score=88.00 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=26.4
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCc
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~ 176 (351)
.+..+.+.||||+|+|||+||+++++.+...
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 4456789999999999999999999987543
No 210
>PHA00729 NTP-binding motif containing protein
Probab=98.23 E-value=2.9e-06 Score=78.87 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=24.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGIN 176 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~ 176 (351)
..|+|+|+||||||+||.+++++++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 479999999999999999999998643
No 211
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.22 E-value=2.2e-06 Score=93.10 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=98.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCC-------hHHHHHHHHHHH-HHHHHhCCceEEEecccc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-------PAKLIRQRYREA-ADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge-------~~~~ir~~f~~A-~~~~~~~~p~IL~IDEID 222 (351)
.+|++||||.|||+.++++|.++|..++..+++...++.... ....|...|..- ........--||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 479999999999999999999999999999999877654321 111122222000 000001223389999999
Q ss_pred cccC-CCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcc-hhccCCcceEEEeCCCH
Q 018745 223 AGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAPTR 300 (351)
Q Consensus 223 ~l~~-~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~-aLlR~gRfd~~i~~P~~ 300 (351)
.+.. .|+ ....+..++. ...+|+|+|+|+...... ++.|.+ ++..+--|+.
T Consensus 439 ~~~~~dRg-----------~v~~l~~l~~---------------ks~~Piv~~cndr~~p~sr~~~~~~-~~l~f~kP~~ 491 (871)
T KOG1968|consen 439 GMFGEDRG-----------GVSKLSSLCK---------------KSSRPLVCTCNDRNLPKSRALSRAC-SDLRFSKPSS 491 (871)
T ss_pred cccchhhh-----------hHHHHHHHHH---------------hccCCeEEEecCCCCccccchhhhc-ceeeecCCcH
Confidence 8876 222 1111222222 456799999999886665 455433 7777777999
Q ss_pred HHHHHHHHHhhcCC--CCCHHHHHHHhcCCCCCCc
Q 018745 301 EDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSI 333 (351)
Q Consensus 301 e~R~~Il~~~~~~~--~~~~~~l~~l~~gf~g~dl 333 (351)
+.+..-+..++..+ .++.+.+.+++... |.||
T Consensus 492 ~~i~~ri~si~~se~~ki~~~~l~~~s~~~-~~Di 525 (871)
T KOG1968|consen 492 ELIRSRIMSICKSEGIKISDDVLEEISKLS-GGDI 525 (871)
T ss_pred HHHHhhhhhhhcccceecCcHHHHHHHHhc-ccCH
Confidence 99777766666554 45566666665544 5554
No 212
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.21 E-value=1.2e-06 Score=86.48 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=43.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC--CccEEeccCccccCCCCChHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREA 204 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg--~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A 204 (351)
.+++||.||||||||.||-+||+++| .||+.++++++.+.....++ .+.+.|++|
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE-~L~qa~Rra 106 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE-ALTQAFRRA 106 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH-HHHHHHHCS
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchH-HHHHHHHHh
Confidence 47999999999999999999999997 89999999999988777665 455677765
No 213
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.17 E-value=2.6e-06 Score=83.33 Aligned_cols=57 Identities=23% Similarity=0.214 Sum_probs=48.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC--CccEEeccCccccCCCCChHHHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 205 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg--~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~ 205 (351)
--+|||+.||||||||.||-+||+++| .||+.++++++.+.....++.+ .+.|++|.
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L-~qa~RraI 122 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEAL-TQALRRAI 122 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHH-HHHHHHhh
Confidence 347999999999999999999999996 7899999999988877777654 45677764
No 214
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.17 E-value=9e-06 Score=84.22 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=76.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 213 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p 213 (351)
.+..|||+|++||||+++|++|.... +.+++.+++..+-+. ..-..+|.... ........
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~------~~e~~lfG~~~g~~~ga~~~~~g~~~~a~g 282 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES------LAESELFGHVKGAFTGAISNRSGKFELADG 282 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH------HHHHHhcCccccccCCCcccCCcchhhcCC
Confidence 35579999999999999999998875 468999998876321 11112333110 01123356
Q ss_pred eEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcce-
Q 018745 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME- 292 (351)
Q Consensus 214 ~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd- 292 (351)
..|||||||.+... ++..|+.++++-....+.+. ......+.||+|||..- ..+...|+|.
T Consensus 283 GtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l---~~~~~~~~f~~ 344 (509)
T PRK05022 283 GTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSD--RSLRVDVRVIAATNRDL---REEVRAGRFRA 344 (509)
T ss_pred CEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCC--cceecceEEEEecCCCH---HHHHHcCCccH
Confidence 78999999876532 33445555552211111111 12234678999998642 1223333332
Q ss_pred --------EEEeCCCHHHHH
Q 018745 293 --------KFYWAPTREDRI 304 (351)
Q Consensus 293 --------~~i~~P~~e~R~ 304 (351)
..|.+|.-.+|.
T Consensus 345 dL~~rl~~~~i~lPpLreR~ 364 (509)
T PRK05022 345 DLYHRLSVFPLSVPPLRERG 364 (509)
T ss_pred HHHhcccccEeeCCCchhch
Confidence 335678777764
No 215
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.16 E-value=3.7e-06 Score=86.83 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
...++|.||||||||+++++++..+
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhccc
Confidence 3579999999999999999998743
No 216
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.16 E-value=2.5e-05 Score=66.27 Aligned_cols=46 Identities=30% Similarity=0.549 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 128 FMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 128 ~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+.-+.+...++.++..++-+.|+.+-|+|+||||||++++.||+.+
T Consensus 32 la~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 32 LAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3335566777888877788899999999999999999999999985
No 217
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.14 E-value=4.9e-06 Score=86.61 Aligned_cols=133 Identities=13% Similarity=0.192 Sum_probs=76.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHH-----------hCCccEEeccCccccCCCCChHHHHHHHHHHHH-----------
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAK-----------MGINPIMMSAGELESGNAGEPAKLIRQRYREAA----------- 205 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~-----------lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~----------- 205 (351)
.+..|||+|++||||+++|++|.+. .+.+|+.++++.+-.. .+-..+|....
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~------lleseLFG~~~gaftga~~~~~ 314 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES------LLEAELFGYEEGAFTGSRRGGR 314 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChh------hHHHHhcCCccccccCcccccc
Confidence 3457999999999999999999887 3568999999876321 11122333110
Q ss_pred -HHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcch
Q 018745 206 -DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (351)
Q Consensus 206 -~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~a 284 (351)
..+.......||||||+.+.. .++..|+.++++-....+.+. ......+.+|++||..- . .
T Consensus 315 ~Gl~e~A~gGTLfLdeI~~Lp~-------------~~Q~kLl~~L~e~~~~r~G~~--~~~~~dvRiIaat~~~L--~-~ 376 (538)
T PRK15424 315 AGLFEIAHGGTLFLDEIGEMPL-------------PLQTRLLRVLEEKEVTRVGGH--QPVPVDVRVISATHCDL--E-E 376 (538)
T ss_pred CCchhccCCCEEEEcChHhCCH-------------HHHHHHHhhhhcCeEEecCCC--ceeccceEEEEecCCCH--H-H
Confidence 011223456899999987542 234455556653221111111 11134567899988642 1 2
Q ss_pred hccCCcce---------EEEeCCCHHHHH
Q 018745 285 LIRDGRME---------KFYWAPTREDRI 304 (351)
Q Consensus 285 LlR~gRfd---------~~i~~P~~e~R~ 304 (351)
+...|+|. ..+.+|.-.+|.
T Consensus 377 ~v~~g~Fr~dL~yrL~~~~I~lPPLReR~ 405 (538)
T PRK15424 377 DVRQGRFRRDLFYRLSILRLQLPPLRERV 405 (538)
T ss_pred HHhcccchHHHHHHhcCCeecCCChhhch
Confidence 33344444 234467777764
No 218
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.14 E-value=8.1e-06 Score=87.45 Aligned_cols=134 Identities=13% Similarity=0.144 Sum_probs=74.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHH-----------HHHHHhCCc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKM 213 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A-----------~~~~~~~~p 213 (351)
....|||+|++|||||++|++|.... +.+++.+++..+..... -..+|... ...+.....
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~------~~~lfg~~~~~~~g~~~~~~g~le~a~~ 471 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLL------ESDLFGHERGAFTGASAQRIGRFELADK 471 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHh------hhhhcCcccccccccccchhhHHHhcCC
Confidence 34579999999999999999998865 56899998876532110 01111100 001123346
Q ss_pred eEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcce-
Q 018745 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME- 292 (351)
Q Consensus 214 ~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd- 292 (351)
..|||||||.+.. .++..|+.++++.....+.+. .....++.+|+|||..- ..+...++|.
T Consensus 472 GtL~Ldei~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l---~~~~~~~~f~~ 533 (686)
T PRK15429 472 SSLFLDEVGDMPL-------------ELQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAATNRDL---KKMVADREFRS 533 (686)
T ss_pred CeEEEechhhCCH-------------HHHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeCCCCH---HHHHHcCcccH
Confidence 7999999987542 233445555542211111111 11235678999987642 1122223332
Q ss_pred --------EEEeCCCHHHHHH
Q 018745 293 --------KFYWAPTREDRIG 305 (351)
Q Consensus 293 --------~~i~~P~~e~R~~ 305 (351)
..|.+|.-.+|.+
T Consensus 534 ~L~~~l~~~~i~lPpLreR~~ 554 (686)
T PRK15429 534 DLYYRLNVFPIHLPPLRERPE 554 (686)
T ss_pred HHHhccCeeEEeCCChhhhHh
Confidence 3466788777643
No 219
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.14 E-value=2.7e-05 Score=77.79 Aligned_cols=89 Identities=16% Similarity=0.182 Sum_probs=55.1
Q ss_pred hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcC-CccccCCCCcccCCCCCceEEEEeCCCC-CCcchhcc
Q 018745 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN-PTCVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIR 287 (351)
Q Consensus 210 ~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~-~~~~~l~~~~~~~~~~~v~II~TTN~~~-~Ld~aLlR 287 (351)
+.+..||+|||+..+. ..++..|++.+.. .+.++..+. ......+.++|+|+|-.+ .|-|.|+
T Consensus 142 ~AnRGIlYvDEvnlL~-------------d~lvd~LLd~aaeG~n~vereGi-si~hpa~fvligTmNPEeGeLrpqLl- 206 (423)
T COG1239 142 RANRGILYVDEVNLLD-------------DHLVDALLDVAAEGVNDVEREGI-SIRHPARFLLIGTMNPEEGELRPQLL- 206 (423)
T ss_pred hccCCEEEEecccccc-------------HHHHHHHHHHHHhCCceeeeCce-eeccCccEEEEeecCccccccchhhH-
Confidence 5567799999995432 1233455555542 122232232 122345678899999654 6777777
Q ss_pred CCcceEEEeC---CCHHHHHHHHHHhhcCC
Q 018745 288 DGRMEKFYWA---PTREDRIGVCKGIFRND 314 (351)
Q Consensus 288 ~gRfd~~i~~---P~~e~R~~Il~~~~~~~ 314 (351)
.||...+.+ .+.++|.+|+++-..-+
T Consensus 207 -DRfg~~v~~~~~~~~~~rv~Ii~r~~~f~ 235 (423)
T COG1239 207 -DRFGLEVDTHYPLDLEERVEIIRRRLAFE 235 (423)
T ss_pred -hhhcceeeccCCCCHHHHHHHHHHHHHhh
Confidence 477777775 78888999987665443
No 220
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.13 E-value=4.5e-05 Score=72.03 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
+....|.|+|++|+|||+||..+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 66789999999999999999999987
No 221
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.13 E-value=5.7e-06 Score=89.81 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=74.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHH-HH----HH-HHHHHHHHhCCceEEEeccccc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI-RQ----RY-REAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~i-r~----~f-~~A~~~~~~~~p~IL~IDEID~ 223 (351)
..|||+|+||||||.+|+++++...... .+++.... .+|-++... .+ .| .++ ..+......+++|||+|.
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~-ytsG~~~s--~vgLTa~~~~~d~~tG~~~le~-GaLvlAdgGtL~IDEidk 568 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSI-YTSGKSSS--SVGLTASIKFNESDNGRAMIQP-GAVVLANGGVCCIDELDK 568 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccc-cCCCCCCc--cccccchhhhcccccCcccccC-CcEEEcCCCeEEecchhh
Confidence 3799999999999999999988543211 11111100 001000000 00 00 000 011133456999999987
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCC-cccCCCCCceEEEEeCCCC-------------CCcchhccCC
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-YNKEENPRVPIIVTGNDFS-------------TLYAPLIRDG 289 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~-~~~~~~~~v~II~TTN~~~-------------~Ld~aLlR~g 289 (351)
+... .+..|++.+++.+ +.+... .......+.-||+|+|... .|+++|+-
T Consensus 569 ms~~-------------~Q~aLlEaMEqqt-IsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS-- 632 (915)
T PTZ00111 569 CHNE-------------SRLSLYEVMEQQT-VTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT-- 632 (915)
T ss_pred CCHH-------------HHHHHHHHHhCCE-EEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--
Confidence 6422 2344555555221 111110 0112356788999999742 56788884
Q ss_pred cceEEEeC---CCHHHHHHHH
Q 018745 290 RMEKFYWA---PTREDRIGVC 307 (351)
Q Consensus 290 Rfd~~i~~---P~~e~R~~Il 307 (351)
|||..+.+ |+.+.=..|.
T Consensus 633 RFDLIf~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 633 RFDLIYLVLDHIDQDTDQLIS 653 (915)
T ss_pred hhcEEEEecCCCChHHHHHHH
Confidence 99998886 7766655553
No 222
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.10 E-value=5.9e-06 Score=84.71 Aligned_cols=153 Identities=18% Similarity=0.275 Sum_probs=90.9
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccc
Q 018745 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 186 (351)
Q Consensus 110 ~~~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~ 186 (351)
...|+|+++++. +|.+.. +...+|.+. +.+..|||.|++||||..+|++|-+.. +-+|+.++|+-+=
T Consensus 239 ~a~y~f~~Iig~---S~~m~~--~~~~akr~A-----~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGE---SPAMLR--VLELAKRIA-----KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccC---CHHHHH--HHHHHHhhc-----CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 345889999886 455542 344555543 556789999999999999999998765 5689999998652
Q ss_pred cCCCCChHHHHHHHHHHHHHH---HH-hC--------CceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCcc
Q 018745 187 SGNAGEPAKLIRQRYREAADI---IK-KG--------KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 254 (351)
Q Consensus 187 s~~~Ge~~~~ir~~f~~A~~~---~~-~~--------~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~ 254 (351)
... +-.++|...... +. .+ +-.=||+|||-.+ ...+++-|+.++.+.+-
T Consensus 309 e~L------lESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem-------------pl~LQaKLLRVLQEkei 369 (560)
T COG3829 309 ETL------LESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM-------------PLPLQAKLLRVLQEKEI 369 (560)
T ss_pred HHH------HHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC-------------CHHHHHHHHHHHhhceE
Confidence 110 112333331000 01 12 3346899999543 23455566666664433
Q ss_pred ccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcc--eEEEe
Q 018745 255 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYW 296 (351)
Q Consensus 255 ~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRf--d~~i~ 296 (351)
..+++- ......|-||++||+.= ..++..|+| |.+|-
T Consensus 370 ~rvG~t--~~~~vDVRIIAATN~nL---~~~i~~G~FReDLYYR 408 (560)
T COG3829 370 ERVGGT--KPIPVDVRIIAATNRNL---EKMIAEGTFREDLYYR 408 (560)
T ss_pred EecCCC--CceeeEEEEEeccCcCH---HHHHhcCcchhhheee
Confidence 333322 12245688999999741 224555655 44443
No 223
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.07 E-value=4e-05 Score=69.52 Aligned_cols=83 Identities=13% Similarity=0.231 Sum_probs=51.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcccc--------CCCCC-----------hHHHHHHHH
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES--------GNAGE-----------PAKLIRQRY 201 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s--------~~~Ge-----------~~~~ir~~f 201 (351)
.|++....++|+||||||||.+|..++... +..++.++..++.. .+.+. .........
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 366777899999999999999999887654 55677777654100 00000 000111122
Q ss_pred HHHHHHHHhCCceEEEecccccccC
Q 018745 202 REAADIIKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 202 ~~A~~~~~~~~p~IL~IDEID~l~~ 226 (351)
....+.+....+++|+||-|.++..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhH
Confidence 3333334556899999999998754
No 224
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.07 E-value=1.3e-05 Score=76.97 Aligned_cols=93 Identities=20% Similarity=0.337 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCc--cEEeccCccccCCCCChHHHHH----H
Q 018745 129 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GIN--PIMMSAGELESGNAGEPAKLIR----Q 199 (351)
Q Consensus 129 ~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~--~i~vs~s~l~s~~~Ge~~~~ir----~ 199 (351)
+.+++++..|.|+..++-+.|+.+-|||++||||.+.++.||+.+ |.. ++..-.+.+ .+.. ++.+. +
T Consensus 90 a~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~--hFP~--~~~ie~Yk~e 165 (344)
T KOG2170|consen 90 AKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATL--HFPH--ASKIEDYKEE 165 (344)
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhc--cCCC--hHHHHHHHHH
Confidence 345567778888888888999999999999999999999999987 221 111100000 1111 11111 1
Q ss_pred HHHHHHHHHHhCCceEEEeccccccc
Q 018745 200 RYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 200 ~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
+-.+..+.+...+.+|.++||+|++-
T Consensus 166 L~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 166 LKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHhcCCceEEechhhhcC
Confidence 11122223357788999999999873
No 225
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.07 E-value=8.1e-06 Score=84.87 Aligned_cols=133 Identities=13% Similarity=0.216 Sum_probs=75.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHH------------HHHHHhCC
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA------------ADIIKKGK 212 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A------------~~~~~~~~ 212 (351)
.+..|||+|++||||+++|++|.+.. +.+|+.+++..+-+. .+-..+|... ..++....
T Consensus 234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~------lleseLFG~~~gaftga~~~~~~Gl~e~A~ 307 (526)
T TIGR02329 234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES------LLEAELFGYEEGAFTGARRGGRTGLIEAAH 307 (526)
T ss_pred CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh------HHHHHhcCCcccccccccccccccchhhcC
Confidence 34579999999999999999998764 568999999866321 1122233311 01111234
Q ss_pred ceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcce
Q 018745 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292 (351)
Q Consensus 213 p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd 292 (351)
...|||||||.+.. .++.-|+.++.+.....+.+. ......+.+|+|||..- ..+...|+|.
T Consensus 308 gGTLfLdeI~~Lp~-------------~~Q~~Ll~~L~~~~~~r~g~~--~~~~~dvRiIaat~~~l---~~~v~~g~fr 369 (526)
T TIGR02329 308 RGTLFLDEIGEMPL-------------PLQTRLLRVLEEREVVRVGGT--EPVPVDVRVVAATHCAL---TTAVQQGRFR 369 (526)
T ss_pred CceEEecChHhCCH-------------HHHHHHHHHHhcCcEEecCCC--ceeeecceEEeccCCCH---HHHhhhcchh
Confidence 56899999987543 234455556553221111111 11133567888887642 1122223332
Q ss_pred ---------EEEeCCCHHHHH
Q 018745 293 ---------KFYWAPTREDRI 304 (351)
Q Consensus 293 ---------~~i~~P~~e~R~ 304 (351)
..+.+|.-.+|.
T Consensus 370 ~dL~~rL~~~~I~lPPLReR~ 390 (526)
T TIGR02329 370 RDLFYRLSILRIALPPLRERP 390 (526)
T ss_pred HHHHHhcCCcEEeCCCchhch
Confidence 345677777764
No 226
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.03 E-value=1.7e-05 Score=77.63 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=26.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
..+|+|+.||||.|+|||+|.-..+..+-.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 457799999999999999999999988754
No 227
>PHA02774 E1; Provisional
Probab=98.01 E-value=3.3e-05 Score=80.38 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=70.9
Q ss_pred HHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE-eccCccccCCCCChHHHHHHHHHHHHHHHHhCCce
Q 018745 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 214 (351)
Q Consensus 136 i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~-vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 214 (351)
..|+++ .+++.-..++||||||||||++|.+|++.++-.++. ++.. +.+- +.- ...-.
T Consensus 423 ~lk~~l--~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~---s~Fw----------Lqp------l~d~k 481 (613)
T PHA02774 423 ALKDFL--KGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK---SHFW----------LQP------LADAK 481 (613)
T ss_pred HHHHHH--hcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc---cccc----------cch------hccCC
Confidence 345554 355545699999999999999999999998644433 4421 1110 111 12335
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCc-ccCCCCCceEEEEeCCCCCCcchhcc-CCcce
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMY-NKEENPRVPIIVTGNDFSTLYAPLIR-DGRME 292 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~-~~~~~~~v~II~TTN~~~~Ld~aLlR-~gRfd 292 (351)
+++|||+- .. ....+...|-+++|.- .+.++.-- +.......|+|+|||---.-++...- ..|+-
T Consensus 482 i~vlDD~t---------~~---~w~y~d~~Lrn~LdG~-~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~ 548 (613)
T PHA02774 482 IALLDDAT---------HP---CWDYIDTYLRNALDGN-PVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRIT 548 (613)
T ss_pred EEEEecCc---------ch---HHHHHHHHHHHHcCCC-cceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEE
Confidence 99999981 00 1233444567777732 12221111 11234567999999954444444221 23555
Q ss_pred EEEe
Q 018745 293 KFYW 296 (351)
Q Consensus 293 ~~i~ 296 (351)
.+.+
T Consensus 549 ~f~F 552 (613)
T PHA02774 549 VFEF 552 (613)
T ss_pred EEEC
Confidence 5544
No 228
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.01 E-value=1.4e-05 Score=80.10 Aligned_cols=131 Identities=13% Similarity=0.166 Sum_probs=79.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh----CCccEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 214 (351)
..+|++|++||||+++|++|.... +.+|+.++|+.+-.... ..++|.... .+..+..-.
T Consensus 102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~------~~eLFG~~kGaftGa~~~k~Glfe~A~GG 175 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQ------EAELFGHEKGAFTGAQGGKAGLFEQANGG 175 (403)
T ss_pred CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHH------HHHHhccccceeecccCCcCchheecCCC
Confidence 579999999999999999997443 56899999987643321 122444321 111233556
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhcc-----CC
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR-----DG 289 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR-----~g 289 (351)
.||+|||-.+-. ..+..|+.+++.-+..-+.+ .......|.+|++||. .++.+++. +-
T Consensus 176 tLfLDEI~~LP~-------------~~Q~kLl~~le~g~~~rvG~--~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~r 238 (403)
T COG1221 176 TLFLDEIHRLPP-------------EGQEKLLRVLEEGEYRRVGG--SQPRPVDVRLICATTE--DLEEAVLAGADLTRR 238 (403)
T ss_pred EEehhhhhhCCH-------------hHHHHHHHHHHcCceEecCC--CCCcCCCceeeecccc--CHHHHHHhhcchhhh
Confidence 999999965432 24456667777433222322 1233567889999884 23444433 01
Q ss_pred cceEEEeCCCHHHH
Q 018745 290 RMEKFYWAPTREDR 303 (351)
Q Consensus 290 Rfd~~i~~P~~e~R 303 (351)
|....|.+|.-.+|
T Consensus 239 l~~~~I~LPpLrER 252 (403)
T COG1221 239 LNILTITLPPLRER 252 (403)
T ss_pred hcCceecCCChhhc
Confidence 34455667888776
No 229
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.01 E-value=0.00014 Score=65.69 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
...++|+||.|+|||+|++.+.+.+
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 4689999999999999999999988
No 230
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=3.1e-05 Score=84.11 Aligned_cols=112 Identities=16% Similarity=0.142 Sum_probs=70.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcc------cc---CCCCChHHHHHHHHHHHHHHHHhCCce
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL------ES---GNAGEPAKLIRQRYREAADIIKKGKMC 214 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l------~s---~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 214 (351)
+++.-+||.||.|+|||-||+++|..+ .-.++.++.+++ .. +|.|..+ ..++. +.+++...+
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~--gg~Lt----eavrrrP~s 662 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEE--GGQLT----EAVKRRPYS 662 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchh--HHHHH----HHHhcCCce
Confidence 466889999999999999999999998 345788888753 22 3455432 11222 223677779
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 279 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~ 279 (351)
||+|||||.-. .. +...|++++|+=. .-++..+.....+++||+|+|.-.
T Consensus 663 VVLfdeIEkAh--------~~-----v~n~llq~lD~Gr--ltDs~Gr~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 663 VVLFEEIEKAH--------PD-----VLNILLQLLDRGR--LTDSHGREVDFKNAIFIMTSNVGS 712 (898)
T ss_pred EEEEechhhcC--------HH-----HHHHHHHHHhcCc--cccCCCcEeeccceEEEEecccch
Confidence 99999998532 22 2334555666110 001111124567899999988633
No 231
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.00 E-value=1.5e-05 Score=78.77 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=41.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCC-------ccEEecc----CccccCCCCChHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSA----GELESGNAGEPAKLIRQRYRE 203 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~-------~~i~vs~----s~l~s~~~Ge~~~~ir~~f~~ 203 (351)
..++++|+||||||||+||+++|+.++. +++.++. +.+.+...+--....|+.|..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHHHH
Confidence 4589999999999999999999999977 8888888 544444333333445555433
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.99 E-value=7.9e-05 Score=65.86 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=24.8
Q ss_pred EEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
+|++||||||||+++..++.+. |..++.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7899999999999999886654 566666654
No 233
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.96 E-value=9.2e-05 Score=65.40 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
+.+.-++++|+||+|||+++.-|+..+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4566799999999999999999998873
No 234
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.96 E-value=5.1e-05 Score=79.80 Aligned_cols=137 Identities=20% Similarity=0.283 Sum_probs=87.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC----------CccEEeccCcccc----------CCCCChH------HHHHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMG----------INPIMMSAGELES----------GNAGEPA------KLIRQRYREA 204 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg----------~~~i~vs~s~l~s----------~~~Ge~~------~~ir~~f~~A 204 (351)
.+.+.|-||||||.+++.+-+++. +.++.+++-.|.+ .+.|+.. ..+...|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 789999999999999999988663 4567777766543 1222211 1233333211
Q ss_pred HHHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcch
Q 018745 205 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (351)
Q Consensus 205 ~~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~a 284 (351)
-.+..++||+|||+|.+..+.. ..|.|++| |-...+.++.||+.+|.-+ |+..
T Consensus 504 ---k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fd----------Wpt~~~sKLvvi~IaNTmd-lPEr 556 (767)
T KOG1514|consen 504 ---KPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFD----------WPTLKNSKLVVIAIANTMD-LPER 556 (767)
T ss_pred ---CCCCCCEEEEeccHHHHhcccH-------------HHHHHHhc----------CCcCCCCceEEEEeccccc-CHHH
Confidence 0145789999999999987642 35667777 4446678888999888765 3333
Q ss_pred hcc---CCc--ceEEEeC-CCHHHHHHHHHHhhcCC
Q 018745 285 LIR---DGR--MEKFYWA-PTREDRIGVCKGIFRND 314 (351)
Q Consensus 285 LlR---~gR--fd~~i~~-P~~e~R~~Il~~~~~~~ 314 (351)
++- ..| +.+.... -+.++..+|+..-+.+.
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 321 112 2333333 78888888977666553
No 235
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.94 E-value=8.7e-06 Score=67.08 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=27.8
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
|+|.||||+|||++|+.+|+.+|+.++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776654
No 236
>PRK15115 response regulator GlrR; Provisional
Probab=97.94 E-value=2.2e-05 Score=79.32 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=78.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 214 (351)
...++|+|++|||||++|+++.... +.+++.+++..+... ..-..+|..+. .........
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ------LLESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH------HHHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 3468999999999999999998875 468999998866321 11222333210 011233457
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcc---
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM--- 291 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRf--- 291 (351)
.|||||||.+... .+..|+..+++.....+.+. .....++.+|+||+.. ++. ++..|+|
T Consensus 231 tl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~--~~~~~~~rii~~~~~~--l~~-~~~~~~f~~~ 292 (444)
T PRK15115 231 TLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSN--RDIDIDVRIISATHRD--LPK-AMARGEFRED 292 (444)
T ss_pred EEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCC--ceeeeeEEEEEeCCCC--HHH-HHHcCCccHH
Confidence 8999999876532 23445555552211111111 1113467899999853 443 4445677
Q ss_pred ------eEEEeCCCHHHHH
Q 018745 292 ------EKFYWAPTREDRI 304 (351)
Q Consensus 292 ------d~~i~~P~~e~R~ 304 (351)
...+.+|.-.+|.
T Consensus 293 l~~~l~~~~i~lPpLr~R~ 311 (444)
T PRK15115 293 LYYRLNVVSLKIPALAERT 311 (444)
T ss_pred HHHhhceeeecCCChHhcc
Confidence 4455578888874
No 237
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.93 E-value=2e-05 Score=67.23 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=39.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCC---ccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~---~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
...|+|+|++||||+++|++|....+. +++.+.+..+ + .+.++ ......|||+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~-------~----~~~l~-------~a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASL-------P----AELLE-------QAKGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCT-------C----HHHHH-------HCTTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhC-------c----HHHHH-------HcCCCEEEECChHHCC
Confidence 446999999999999999999987654 3333333321 1 22222 3477899999998764
No 238
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.90 E-value=2.9e-05 Score=80.26 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
....++|.||||||||++++.++..+
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccC
Confidence 34579999999999999999998754
No 239
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.89 E-value=0.00021 Score=66.85 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=77.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~~~ 227 (351)
...+-.++||+|||||..++.+|+.+|..++..++++-. ....+.++|.-+ ...-+-+.+||++.+-..
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~-----~~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGL-----AQSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHH-----HHHT-EEEEETCCCSSHH
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHH-----hhcCchhhhhhhhhhhHH
Confidence 345778999999999999999999999999999988643 335566666544 223578899999866421
Q ss_pred CCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeC----CCCCCcchhccCCcceEEEe--CCCHH
Q 018745 228 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW--APTRE 301 (351)
Q Consensus 228 r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN----~~~~Ld~aLlR~gRfd~~i~--~P~~e 301 (351)
.-.+..+.+......+..+.....+.+. ...-.+..-+.+|.| ....||+.|..-.| -+. .||.+
T Consensus 100 -----vLS~i~~~i~~i~~al~~~~~~~~~~g~-~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFR---pvam~~PD~~ 170 (231)
T PF12774_consen 100 -----VLSVISQQIQSIQDALRAKQKSFTLEGQ-EIKLNPNCGIFITMNPGYAGRSELPENLKALFR---PVAMMVPDLS 170 (231)
T ss_dssp -----HHHHHHHHHHHHHHHHHCTSSEEEETTC-EEE--TT-EEEEEE-B-CCCC--S-HHHCTTEE---EEE--S--HH
T ss_pred -----HHHHHHHHHHHHHHhhcccccccccCCC-EEEEccceeEEEeeccccCCcccCCHhHHHHhh---eeEEeCCCHH
Confidence 1222233333222222232222222221 112234455667777 34578888775333 344 49988
Q ss_pred HHHHHH
Q 018745 302 DRIGVC 307 (351)
Q Consensus 302 ~R~~Il 307 (351)
...++.
T Consensus 171 ~I~ei~ 176 (231)
T PF12774_consen 171 LIAEIL 176 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877775
No 240
>PHA02624 large T antigen; Provisional
Probab=97.88 E-value=9.9e-05 Score=77.22 Aligned_cols=137 Identities=16% Similarity=0.088 Sum_probs=73.1
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
.+++..+.++||||||||||++|.++++.++-..+.++.+.-.+ .|... -...--+.+|||+-.
T Consensus 426 ~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks------------~FwL~----pl~D~~~~l~dD~t~ 489 (647)
T PHA02624 426 ENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL------------NFELG----CAIDQFMVVFEDVKG 489 (647)
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh------------HHHhh----hhhhceEEEeeeccc
Confidence 36777789999999999999999999999965566666442111 12211 122335888898743
Q ss_pred ccCCCC--CCccchhhhHHHHHHHHHhhcCCccccCCCCc-ccCCCCCceEEEEeCCCCCCcchhccCCcceEEEeC-CC
Q 018745 224 GAGRMG--GTTQYTVNNQMVNATLMNIADNPTCVQLPGMY-NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PT 299 (351)
Q Consensus 224 l~~~r~--~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~-~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~~-P~ 299 (351)
-.-... ...++-.|- .-|-+.+|.-..|.++.-- +.....-.|.|+|||.. .|+.-+. -||.+.+.. |.
T Consensus 490 ~~~~~~~Lp~G~~~dNl----~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney-~iP~T~~--~Rf~~~~~F~~k 562 (647)
T PHA02624 490 QPADNKDLPSGQGMNNL----DNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEY-LIPQTVK--ARFAKVLDFKPK 562 (647)
T ss_pred cccccccCCcccccchh----hHHHhhcCCCCccccchhccCchhccCCCeEEeecCc-ccchhHH--HHHHHhcccccc
Confidence 221100 000111100 1223334421112221110 11122336899999964 3666555 378777774 54
Q ss_pred HHHH
Q 018745 300 REDR 303 (351)
Q Consensus 300 ~e~R 303 (351)
.--+
T Consensus 563 ~~l~ 566 (647)
T PHA02624 563 PYLK 566 (647)
T ss_pred HHHH
Confidence 4433
No 241
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.87 E-value=1.6e-05 Score=69.24 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
+++..|+|+|+||||||++|+.+|+.+++.++..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4567999999999999999999999999887743
No 242
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.87 E-value=4.6e-05 Score=77.09 Aligned_cols=132 Identities=15% Similarity=0.225 Sum_probs=75.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 214 (351)
...++++|++||||+++|+++.... +.+++.+++..+-.. ..-..+|.... ..+......
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 239 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES------LLESELFGHEKGAFTGAQTLRQGLFERANEG 239 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH------HHHHHhcCCCCCCCCCCCCCCCCceEECCCC
Confidence 4569999999999999999997764 467888888766321 11222332110 011123457
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceE-
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK- 293 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~- 293 (351)
.|||||||.+... ++..|++++++.....+.+. .....++.||+|||..- ..+.+.|+|..
T Consensus 240 tl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~l---~~~~~~g~~~~~ 301 (457)
T PRK11361 240 TLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGH--QTIKVDIRIIAATNRDL---QAMVKEGTFRED 301 (457)
T ss_pred EEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence 8999999876532 34455666653221111111 11134577899998532 13444455533
Q ss_pred --------EEeCCCHHHHH
Q 018745 294 --------FYWAPTREDRI 304 (351)
Q Consensus 294 --------~i~~P~~e~R~ 304 (351)
.+.+|.-.+|.
T Consensus 302 l~~~l~~~~i~~ppLreR~ 320 (457)
T PRK11361 302 LFYRLNVIHLILPPLRDRR 320 (457)
T ss_pred HHHHhccceecCCChhhch
Confidence 34457766653
No 243
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.86 E-value=0.0002 Score=73.66 Aligned_cols=33 Identities=30% Similarity=0.338 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
.+.+||+||+|||||+.++.+|+++|+.++.-+
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 468999999999999999999999999887655
No 244
>PRK08118 topology modulation protein; Reviewed
Probab=97.86 E-value=4.1e-05 Score=67.88 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=29.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
-|++.||||+|||++|+.+++.++++++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48899999999999999999999999887764
No 245
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.86 E-value=2.9e-05 Score=74.31 Aligned_cols=141 Identities=15% Similarity=0.215 Sum_probs=75.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCcc---EEeccCccccCCCCChHHHHHHHHHHHHH-----HH--HhCCceEEEe
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINP---IMMSAGELESGNAGEPAKLIRQRYREAAD-----II--KKGKMCCLMI 218 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~---i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~-----~~--~~~~p~IL~I 218 (351)
.+.+||.||+|||||.+++..-..+.-.- ..+..+.. .++..+.+..+..-+ .. ..++.+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 45799999999999999998776654322 22222211 122222222111000 00 0345679999
Q ss_pred cccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCccc-----CCCCCceEEEEeCCCC---CCcchhccCCc
Q 018745 219 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDFS---TLYAPLIRDGR 290 (351)
Q Consensus 219 DEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~-----~~~~~v~II~TTN~~~---~Ld~aLlR~gR 290 (351)
||+..-..... ..+...+.|-++++. .++++. ....++-+|+++|... .+++.++| .
T Consensus 107 DDlN~p~~d~y-------gtq~~iElLRQ~i~~------~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~ 171 (272)
T PF12775_consen 107 DDLNMPQPDKY-------GTQPPIELLRQLIDY------GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H 171 (272)
T ss_dssp ETTT-S---TT-------S--HHHHHHHHHHHC------SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred cccCCCCCCCC-------CCcCHHHHHHHHHHh------cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence 99964433322 122234555566652 244432 2235678889888532 47888887 3
Q ss_pred ceEEEeC--CCHHHHHHHHHHhh
Q 018745 291 MEKFYWA--PTREDRIGVCKGIF 311 (351)
Q Consensus 291 fd~~i~~--P~~e~R~~Il~~~~ 311 (351)
|.. +.+ |+.+....|...++
T Consensus 172 f~i-~~~~~p~~~sl~~If~~il 193 (272)
T PF12775_consen 172 FNI-LNIPYPSDESLNTIFSSIL 193 (272)
T ss_dssp EEE-EE----TCCHHHHHHHHHH
T ss_pred eEE-EEecCCChHHHHHHHHHHH
Confidence 443 443 99988888854444
No 246
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.86 E-value=0.00023 Score=67.92 Aligned_cols=140 Identities=19% Similarity=0.307 Sum_probs=84.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh-C--CccEEe------ccC-c-c-----cc--------CCCCChHH-HHHHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM-G--INPIMM------SAG-E-L-----ES--------GNAGEPAK-LIRQRYREAA 205 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l-g--~~~i~v------s~s-~-l-----~s--------~~~Ge~~~-~ir~~f~~A~ 205 (351)
.+++|||+|+||-+.+.|+-+++ | +.-..+ +++ . + .+ ..+|...+ .+.++..+.+
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 79999999999999999999887 3 221111 111 0 1 11 12233222 2444444432
Q ss_pred HHHH-----hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCC
Q 018745 206 DIIK-----KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 280 (351)
Q Consensus 206 ~~~~-----~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~ 280 (351)
+.-. +..-.+++|.|.|.+-..- |. +|-.-++ .+....-+|..+|..+.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~dA----Q~---------aLRRTME-------------kYs~~~RlIl~cns~Sr 169 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRDA----QH---------ALRRTME-------------KYSSNCRLILVCNSTSR 169 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHHH----HH---------HHHHHHH-------------HHhcCceEEEEecCccc
Confidence 1111 2234699999998764321 11 1111111 33456679999999999
Q ss_pred CcchhccCCcceEEEeCCCHHHHHHHHHHhhcCCCCC
Q 018745 281 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVA 317 (351)
Q Consensus 281 Ld~aLlR~gRfd~~i~~P~~e~R~~Il~~~~~~~~~~ 317 (351)
+-+|+..+. +-..+..|+.++...++...++.+++.
T Consensus 170 iIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~ 205 (351)
T KOG2035|consen 170 IIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQ 205 (351)
T ss_pred chhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhccc
Confidence 999987532 333344599999999999998887655
No 247
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.80 E-value=7.1e-05 Score=68.80 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=32.5
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccC
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s 183 (351)
.|++....++|+||||+|||++|..+|.+. +..++.++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 366777889999999999999999998754 6667777664
No 248
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.79 E-value=0.00016 Score=65.84 Aligned_cols=23 Identities=22% Similarity=-0.005 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~ 172 (351)
..++|.||+|+|||+|.+.|+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 68999999999999999999853
No 249
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.79 E-value=4.3e-05 Score=79.34 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=35.6
Q ss_pred HHHHhhhC--CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 136 ITKNFMSL--PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 136 i~k~~l~~--~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
-++.|+.. .+....+.+||+||||||||++++++|+++|..+..-
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 45666642 3444567999999999999999999999999877653
No 250
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.78 E-value=9.5e-05 Score=75.51 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=51.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCC------CCC--------hHHHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------AGE--------PAKLIRQRYREAADI 207 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~------~Ge--------~~~~ir~~f~~A~~~ 207 (351)
|+.+...++|+||||+|||+|+..+|... +..+++++..+-.+.. .|. .+..+.++. +.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~----~~ 151 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAIL----AT 151 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHH----HH
Confidence 66777889999999999999999998765 5667777654321100 000 001122222 22
Q ss_pred HHhCCceEEEecccccccCC
Q 018745 208 IKKGKMCCLMINDLDAGAGR 227 (351)
Q Consensus 208 ~~~~~p~IL~IDEID~l~~~ 227 (351)
++..+|.+|+||+|..+...
T Consensus 152 i~~~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 152 IEEEKPDLVVIDSIQTMYSP 171 (446)
T ss_pred HHhhCCCEEEEechhhhccc
Confidence 35678999999999877643
No 251
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.76 E-value=7.6e-05 Score=75.99 Aligned_cols=133 Identities=13% Similarity=0.169 Sum_probs=75.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 214 (351)
...++|+|++|||||++|++|.... +.+|+.++++.+.. ...-..+|.... ..+......
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~------~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~G 234 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK------DLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH------HHHHHHhcCCCCCCCCCCCcCCCCCeeECCCC
Confidence 4569999999999999999998876 45789999886622 112223333210 001123456
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-------CCcchhcc
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------TLYAPLIR 287 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-------~Ld~aLlR 287 (351)
.|||||+|.+... ++..|+.++++.....+.+. ......+.||+||+..- .+.+.|..
T Consensus 235 tl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~ 299 (469)
T PRK10923 235 TLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGY--APVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 (469)
T ss_pred EEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCCC--CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH
Confidence 8999999876532 23455556553221111111 01134568899887531 23333332
Q ss_pred CCcc-eEEEeCCCHHHHH
Q 018745 288 DGRM-EKFYWAPTREDRI 304 (351)
Q Consensus 288 ~gRf-d~~i~~P~~e~R~ 304 (351)
|+ ...+.+|.-.+|.
T Consensus 300 --~l~~~~i~~PpLreR~ 315 (469)
T PRK10923 300 --RLNVIRVHLPPLRERR 315 (469)
T ss_pred --HhcceeecCCCcccch
Confidence 33 4556677766654
No 252
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.74 E-value=7.3e-05 Score=74.80 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=46.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCC-----c-cEEeccCc---------------cccCCCCChHHHHH---HHHHHHHHH
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGI-----N-PIMMSAGE---------------LESGNAGEPAKLIR---QRYREAADI 207 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~-----~-~i~vs~s~---------------l~s~~~Ge~~~~ir---~~f~~A~~~ 207 (351)
.||.||||+|||+|++.|++.... . ++.+.... +.+.+-..+...++ .....|...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999997743 2 22222221 22333333444444 233344333
Q ss_pred HHhCCceEEEeccccccc
Q 018745 208 IKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 208 ~~~~~p~IL~IDEID~l~ 225 (351)
...++..+||||||..++
T Consensus 252 ~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 252 VEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHcCCCEEEEEEChHHHH
Confidence 346788999999998764
No 253
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.74 E-value=3e-05 Score=76.10 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=69.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCc-----c---------ccCCCCChHHHHHHHHHHHHHHHHhCCce
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-----L---------ESGNAGEPAKLIRQRYREAADIIKKGKMC 214 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~-----l---------~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 214 (351)
...+||.|.||||||.|.+.+++-.-..+ .+++.. | ..+|.-+...+ -.....
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaGal------------vlad~G 123 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAGAL------------VLADGG 123 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE-HH------------HHCTTS
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeCCch------------hcccCc
Confidence 45899999999999999998865443322 222221 1 11111111111 234567
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCcc-ccCCCCcccCCCCCceEEEEeCCCC-------------C
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDFS-------------T 280 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~-~~l~~~~~~~~~~~v~II~TTN~~~-------------~ 280 (351)
|++|||+|.+-... ...|.+.+++.+- +.-.++ ......+.-|++++|... .
T Consensus 124 iccIDe~dk~~~~~-------------~~~l~eaMEqq~isi~kagi-~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~ 189 (331)
T PF00493_consen 124 ICCIDEFDKMKEDD-------------RDALHEAMEQQTISIAKAGI-VTTLNARCSVLAAANPKFGRYDPNKSLSENIN 189 (331)
T ss_dssp EEEECTTTT--CHH-------------HHHHHHHHHCSCEEECTSSS-EEEEE---EEEEEE--TT--S-TTS-CGCCT-
T ss_pred eeeecccccccchH-------------HHHHHHHHHcCeeccchhhh-cccccchhhhHHHHhhhhhhcchhhhhHHhcc
Confidence 99999999764311 2344555553221 111111 112256678999999766 5
Q ss_pred CcchhccCCcceEEEeC---CCHHHHHHHHHHhhc
Q 018745 281 LYAPLIRDGRMEKFYWA---PTREDRIGVCKGIFR 312 (351)
Q Consensus 281 Ld~aLlR~gRfd~~i~~---P~~e~R~~Il~~~~~ 312 (351)
++++|+. |||..+.+ |+.+.-..+.+.++.
T Consensus 190 l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 190 LPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred cchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence 8888885 89999886 776666666554443
No 254
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.74 E-value=0.00019 Score=66.53 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=52.6
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcccc--------------CC-----C----------C
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES--------------GN-----A----------G 191 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s--------------~~-----~----------G 191 (351)
.|++....++++|+||+|||+++..++.+. |..++.++..+-.. ++ . .
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 377888999999999999999999986543 55665555432110 00 0 0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 192 e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
.......+++....+.+...+|.+|+||++-.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0011223445555555566789999999997653
No 255
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.73 E-value=3.2e-05 Score=74.25 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=45.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC--CccEEeccCccccCCCCChHHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 205 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg--~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~ 205 (351)
-+++||.||||||||.||-+|++++| .+|..+.++++.+.-+-.++-+. +-|++|.
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvLm-enfRRaI 121 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVLM-ENFRRAI 121 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHHH-HHHHHHh
Confidence 36999999999999999999999995 68999999999887766665443 4566654
No 256
>PRK07261 topology modulation protein; Provisional
Probab=97.72 E-value=9.2e-05 Score=65.76 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=30.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCC
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~ 190 (351)
|++.|+||+|||+||+.++..++.+.+.++.-.....+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~ 41 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQ 41 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccc
Confidence 789999999999999999999998877665433333333
No 257
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.72 E-value=0.00029 Score=68.95 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC----CCCC--------hHHHHHHHHHHHHHHH
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGE--------PAKLIRQRYREAADII 208 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~----~~Ge--------~~~~ir~~f~~A~~~~ 208 (351)
.|++.-..++|+||||||||+||..++.+. |-.++.++..+..+. ..|. ......+.+..+..++
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 467777899999999999999998766554 555666654332110 0000 0001222333343445
Q ss_pred HhCCceEEEecccccccCC
Q 018745 209 KKGKMCCLMINDLDAGAGR 227 (351)
Q Consensus 209 ~~~~p~IL~IDEID~l~~~ 227 (351)
+...+.+|+||-+-++.++
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 6788999999999888754
No 258
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.71 E-value=4.2e-05 Score=64.68 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=25.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEeccCcc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l 185 (351)
|++.||||||||++|+.+++.++.. .++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~--~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAV--VISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEE--EEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCE--EEeHHHH
Confidence 7899999999999999999999943 3444443
No 259
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.71 E-value=0.00011 Score=69.35 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCc------cEEeccC---c-------c-----ccCCCCChHHHH---HHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG---E-------L-----ESGNAGEPAKLI---RQRYRE 203 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~------~i~vs~s---~-------l-----~s~~~Ge~~~~i---r~~f~~ 203 (351)
...-++|.||+|||||+|++.+++.+... ++.+... + + .+.+-..+...+ ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 34568999999999999999999987542 2222221 0 0 122222222222 233334
Q ss_pred HHHHHHhCCceEEEeccccccc
Q 018745 204 AADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 204 A~~~~~~~~p~IL~IDEID~l~ 225 (351)
|......++..+|||||+..+.
T Consensus 95 a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHhh
Confidence 4333346788999999998664
No 260
>PRK13695 putative NTPase; Provisional
Probab=97.69 E-value=0.00028 Score=62.41 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l 173 (351)
-++|.|++|+|||+|++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988775
No 261
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.68 E-value=0.00021 Score=71.41 Aligned_cols=78 Identities=19% Similarity=0.160 Sum_probs=49.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC------CCCC--------hHHHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGE--------PAKLIRQRYREAADI 207 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~------~~Ge--------~~~~ir~~f~~A~~~ 207 (351)
|+.+...++|+|+||+|||+|+..+|..+ +..+++++..+-... ..|. .+..+..+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~---- 153 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILAS---- 153 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHH----
Confidence 56666889999999999999999998765 345666665421110 0000 01112222222
Q ss_pred HHhCCceEEEecccccccC
Q 018745 208 IKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 208 ~~~~~p~IL~IDEID~l~~ 226 (351)
+...+|.+|+||+|..+..
T Consensus 154 i~~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 154 IEELKPDLVIIDSIQTVYS 172 (372)
T ss_pred HHhcCCcEEEEcchHHhhc
Confidence 2567899999999988754
No 262
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00028 Score=68.14 Aligned_cols=117 Identities=12% Similarity=0.025 Sum_probs=74.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccE--------EeccCcc--cc-CCCC--ChHHHHHHHHHHHHHHHHhC
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI--------MMSAGEL--ES-GNAG--EPAKLIRQRYREAADIIKKG 211 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i--------~vs~s~l--~s-~~~G--e~~~~ir~~f~~A~~~~~~~ 211 (351)
..+.|..+||+||.|+||+.+|.++|+.+-+.-- .-...++ .. .-.+ -....+|++-..+...-..+
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 4577899999999999999999999998754210 0001111 00 0000 12344555544441111245
Q ss_pred CceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhcc
Q 018745 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 287 (351)
Q Consensus 212 ~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR 287 (351)
...|++||++|.+-. .....|+..++ ++..++.+|..|+.++.|.|.++.
T Consensus 95 ~~kv~ii~~ad~mt~-------------~AaNaLLK~LE-------------EPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 95 PYKIYIIHEADRMTL-------------DAISAFLKVLE-------------DPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred CceEEEEechhhcCH-------------HHHHHHHHHhh-------------cCCCCeEEEEEeCChhhCcHHHHh
Confidence 667999999987542 23456667777 456778889999999999998775
No 263
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.66 E-value=0.00011 Score=71.10 Aligned_cols=115 Identities=11% Similarity=0.141 Sum_probs=68.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCc------cEEeccCccccCCCCChHHHHHHHHHHHHH-HHHh--CCceEEEeccc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAGEPAKLIRQRYREAAD-IIKK--GKMCCLMINDL 221 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~-~~~~--~~p~IL~IDEI 221 (351)
.+|+|||||+|||....++|..+-.+ +..++++.= .-.+ ..+.--..|..+.. .+.. ..+.++++||.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~--rgid-~vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD--RGID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc--cCCc-chHHHHHHHHhhccceeccccCceeEEEecch
Confidence 89999999999999999999987442 122222211 1111 22222234555411 0011 26789999999
Q ss_pred ccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceEEEe
Q 018745 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 296 (351)
Q Consensus 222 D~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~~i~ 296 (351)
|++...- |.... | .+. ....+.-++..+|.+..+.||+.- ||.++=.
T Consensus 141 DaMT~~A----QnALR-R--------vie-------------k~t~n~rF~ii~n~~~ki~pa~qs--Rctrfrf 187 (360)
T KOG0990|consen 141 DAMTRDA----QNALR-R--------VIE-------------KYTANTRFATISNPPQKIHPAQQS--RCTRFRF 187 (360)
T ss_pred hHhhHHH----HHHHH-H--------HHH-------------HhccceEEEEeccChhhcCchhhc--ccccCCC
Confidence 9875331 11111 1 122 335566677889999999999873 5655433
No 264
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.64 E-value=0.00043 Score=67.87 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=52.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC----CCCCh-H-------HHHHHHHHHHHHHH
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEP-A-------KLIRQRYREAADII 208 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~----~~Ge~-~-------~~ir~~f~~A~~~~ 208 (351)
.|++.-+.+.++||||||||+||-.++.+. |..++.++..+-.+. ..|.. . ....+.+..+..++
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 367777899999999999999999877544 556666655321110 00000 0 01122333333445
Q ss_pred HhCCceEEEecccccccCC
Q 018745 209 KKGKMCCLMINDLDAGAGR 227 (351)
Q Consensus 209 ~~~~p~IL~IDEID~l~~~ 227 (351)
+...+.+|+||-+-++.++
T Consensus 130 ~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred hccCCCEEEEcchHhhccc
Confidence 6788999999999888754
No 265
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.63 E-value=0.00039 Score=61.45 Aligned_cols=73 Identities=15% Similarity=0.307 Sum_probs=47.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCccEE---eccCc-------------cc-----cC--CC-CCh---HHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIM---MSAGE-------------LE-----SG--NA-GEP---AKLIRQR 200 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l---g~~~i~---vs~s~-------------l~-----s~--~~-Ge~---~~~ir~~ 200 (351)
-|.+|+++|.|||++|-.+|-.. |..+.. +++.. +. .. +. .+. ....++.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 57889999999999999887654 555555 44420 00 00 00 111 1245566
Q ss_pred HHHHHHHHHhCCceEEEeccccc
Q 018745 201 YREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 201 f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
++.|.+.+..+...+|+||||-.
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHh
Confidence 67776777788899999999843
No 266
>PRK13947 shikimate kinase; Provisional
Probab=97.61 E-value=0.0002 Score=62.65 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=32.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCCh
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~ 193 (351)
.|+|.|+||||||++++.+|+.+|++++... .+.....|.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d--~~~~~~~g~~ 43 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD--KEIEKMTGMT 43 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc--hhhhhhcCCc
Confidence 4899999999999999999999999987544 3444444443
No 267
>PRK05973 replicative DNA helicase; Provisional
Probab=97.60 E-value=0.0011 Score=62.37 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=30.3
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
.|+++-..++|.|+||+|||+++-.++.+. |.++++++.
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 366666789999999999999999876654 666666554
No 268
>PRK06762 hypothetical protein; Provisional
Probab=97.60 E-value=0.0001 Score=64.36 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~ 186 (351)
|..++|.|+||||||++|+.+++.++..++.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 67899999999999999999999997666666655443
No 269
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.59 E-value=0.00014 Score=73.49 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=73.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 214 (351)
...++|+|++||||+++|+++.... ..+++.+++..+-+. ..-..+|.... ..+......
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN------LLESELFGYEKGAFTGAVKQTLGKIEYAHGG 235 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH------HHHHHhcCCCCCCcCCCccCCCCceeECCCC
Confidence 3568999999999999999998765 357888988765221 11222333110 011234567
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-------CCcchhcc
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------TLYAPLIR 287 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-------~Ld~aLlR 287 (351)
.|||||||.+.. .++..|+.++.+-....+.+. .....++.+|+||+..- .+.+.|..
T Consensus 236 tl~l~~i~~l~~-------------~~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~ 300 (445)
T TIGR02915 236 TLFLDEIGDLPL-------------NLQAKLLRFLQERVIERLGGR--EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY 300 (445)
T ss_pred EEEEechhhCCH-------------HHHHHHHHHHhhCeEEeCCCC--ceeeeceEEEEecCCCHHHHHHcCCccHHHHH
Confidence 899999987643 234445555552211111110 11123567888887542 22222211
Q ss_pred CCcc-eEEEeCCCHHHHHH
Q 018745 288 DGRM-EKFYWAPTREDRIG 305 (351)
Q Consensus 288 ~gRf-d~~i~~P~~e~R~~ 305 (351)
|+ ...+.+|.-.+|.+
T Consensus 301 --~l~~~~i~lPpLr~R~~ 317 (445)
T TIGR02915 301 --RIAEISITIPPLRSRDG 317 (445)
T ss_pred --HhccceecCCCchhchh
Confidence 22 23455688777754
No 270
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.58 E-value=0.00031 Score=64.65 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=49.8
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---------CCccEEeccCccccC-C-------CC---------------
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG-N-------AG--------------- 191 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---------g~~~i~vs~s~l~s~-~-------~G--------------- 191 (351)
.|++....+.|+||||||||++|..+|... +..++.++...-... . .+
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEec
Confidence 367777899999999999999999987553 145555554331000 0 00
Q ss_pred ChHHHHHHHHHHHHHHHHhC-CceEEEeccccccc
Q 018745 192 EPAKLIRQRYREAADIIKKG-KMCCLMINDLDAGA 225 (351)
Q Consensus 192 e~~~~ir~~f~~A~~~~~~~-~p~IL~IDEID~l~ 225 (351)
.+...+...+....+.+... ++.+|+||-+.++.
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~ 128 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALF 128 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHH
Confidence 00111222333333344455 89999999998765
No 271
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.57 E-value=0.00068 Score=62.43 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~ 171 (351)
++.++|+||.|+|||++.+.|+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999983
No 272
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.57 E-value=0.00019 Score=73.31 Aligned_cols=122 Identities=15% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 213 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p 213 (351)
....|||+|++||||-.+|++|-+.. +-+|+.++++.+-.. ..-.++|.... .......-
T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~------l~ESELFGhekGAFTGA~~~r~G~fE~A~G 236 (464)
T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN------LLESELFGHEKGAFTGAITRRIGRFEQANG 236 (464)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH------HHHHHhhcccccCcCCcccccCcceeEcCC
Confidence 34579999999999999999998776 458999999866211 11122444210 01113356
Q ss_pred eEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcceE
Q 018745 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 293 (351)
Q Consensus 214 ~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd~ 293 (351)
.-||||||..+.- .++.-|+.++..-+...+.+. ..-.-.|-||++||.. |. .++..|+|-.
T Consensus 237 GTLfLDEI~~mpl-------------~~Q~kLLRvLqe~~~~rvG~~--~~i~vdvRiIaaT~~d--L~-~~v~~G~FRe 298 (464)
T COG2204 237 GTLFLDEIGEMPL-------------ELQVKLLRVLQEREFERVGGN--KPIKVDVRIIAATNRD--LE-EEVAAGRFRE 298 (464)
T ss_pred ceEEeeccccCCH-------------HHHHHHHHHHHcCeeEecCCC--cccceeeEEEeecCcC--HH-HHHHcCCcHH
Confidence 7999999954432 223334444442211111111 1224567899999963 22 2344566543
No 273
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.57 E-value=0.00026 Score=64.66 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=31.4
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
.|++....++|+|+||||||++|..+|.+. +.+++.++.
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 367777889999999999999999998765 456666654
No 274
>PRK03839 putative kinase; Provisional
Probab=97.56 E-value=6.9e-05 Score=66.50 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=27.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
.|+|.|+||+|||++++.+|+.++++++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3889999999999999999999999887654
No 275
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.55 E-value=0.00031 Score=64.65 Aligned_cols=81 Identities=17% Similarity=0.099 Sum_probs=50.1
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh----CCccEEeccCccc--------------------------cCCCCCh
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELE--------------------------SGNAGEP 193 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~s~l~--------------------------s~~~Ge~ 193 (351)
.|++....+|+.||||||||.++..++.+. |..++.++..+-. +......
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 477888999999999999999999765432 7777777654211 0000000
Q ss_pred ---HHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 194 ---AKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 194 ---~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
...+..+.....+.++..++.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1122333333334446667899999999888
No 276
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.54 E-value=0.00056 Score=62.61 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=26.0
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.|++.-..+.|+||||+|||++|..+|...
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 467777899999999999999999998764
No 277
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.00056 Score=69.31 Aligned_cols=180 Identities=15% Similarity=0.144 Sum_probs=105.3
Q ss_pred HHHHHHhhhC-CCCCCCcEEEEEcCCCccHHHHHHHHHHHhC-----CccEEeccCccc--------------cCCCCC-
Q 018745 134 VHITKNFMSL-PNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELE--------------SGNAGE- 192 (351)
Q Consensus 134 ~~i~k~~l~~-~~~~~p~glLL~GppGtGKT~LA~aIA~~lg-----~~~i~vs~s~l~--------------s~~~Ge- 192 (351)
+.++++|+.. ...+.+..+.+.|-||||||.+..-+-.... ...+++++..+. ....+.
T Consensus 159 ~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~ 238 (529)
T KOG2227|consen 159 MDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPG 238 (529)
T ss_pred HHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCc
Confidence 4556666643 3567788999999999999999997766552 233566665431 111111
Q ss_pred hHHHHHHHHHHHHHHHH-hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceE
Q 018745 193 PAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (351)
Q Consensus 193 ~~~~ir~~f~~A~~~~~-~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~I 271 (351)
.+....+.|... .. ...|-+|++||+|.++.+.. ..|+.+ -+|...+..++.+
T Consensus 239 ~~~~~~~~~~~h---~~q~k~~~llVlDEmD~L~tr~~-------------~vLy~l----------Fewp~lp~sr~iL 292 (529)
T KOG2227|consen 239 TGMQHLEKFEKH---TKQSKFMLLLVLDEMDHLITRSQ-------------TVLYTL----------FEWPKLPNSRIIL 292 (529)
T ss_pred hhHHHHHHHHHH---HhcccceEEEEechhhHHhhccc-------------ceeeee----------hhcccCCcceeee
Confidence 122233334333 12 23578999999999885432 112222 1255567889999
Q ss_pred EEEeCCCCCCcchhccCCcceEEE-------eCCCHHHHHHHHHHhhcCCCCC---HHHHHHHhcCCCCCCccccchhh
Q 018745 272 IVTGNDFSTLYAPLIRDGRMEKFY-------WAPTREDRIGVCKGIFRNDNVA---DDDIVKLVDTFPGQSIGKFPVPL 340 (351)
Q Consensus 272 I~TTN~~~~Ld~aLlR~gRfd~~i-------~~P~~e~R~~Il~~~~~~~~~~---~~~l~~l~~gf~g~dldf~galr 340 (351)
|+.+|..+.=|..|.|- ..|..+ .-.+.++..+|+..-+...... ...+...+..-+|..=|...||.
T Consensus 293 iGiANslDlTdR~LprL-~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLd 370 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRL-NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALD 370 (529)
T ss_pred eeehhhhhHHHHHhhhh-hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHH
Confidence 99999988777766541 222221 1278899999998877654222 22333333333443334444443
No 278
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.53 E-value=0.0011 Score=61.88 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=30.1
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHH---hCCccEEecc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~---lg~~~i~vs~ 182 (351)
.|+++...+|++||||||||.+|..++.+ .|.+.++++.
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 37777889999999999999999876543 2666666553
No 279
>PLN02200 adenylate kinase family protein
Probab=97.53 E-value=0.0001 Score=68.94 Aligned_cols=41 Identities=39% Similarity=0.685 Sum_probs=33.5
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~ 186 (351)
++.+.|..|+|.||||||||++|+.+|+++|+. .++.+++.
T Consensus 38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 356678899999999999999999999999875 45555553
No 280
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.53 E-value=0.00038 Score=59.65 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
++|.|+||+|||++|+.+++.++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 789999999999999999999887654
No 281
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.53 E-value=0.0006 Score=63.52 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=28.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
+++....++|.||||||||++|..++... |...+.++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 56666799999999999999986554433 556666554
No 282
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.52 E-value=0.0012 Score=63.92 Aligned_cols=87 Identities=14% Similarity=0.160 Sum_probs=52.6
Q ss_pred HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC---------CccEEeccCccccC---------CCCC---hHHHH
Q 018745 139 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG---------NAGE---PAKLI 197 (351)
Q Consensus 139 ~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg---------~~~i~vs~s~l~s~---------~~Ge---~~~~i 197 (351)
..+..|....+.++||+|++|.|||++++..+.... ++++.+....--+. ..|. +...+
T Consensus 51 ~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~ 130 (302)
T PF05621_consen 51 ELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRV 130 (302)
T ss_pred HHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCH
Confidence 444455555556899999999999999999887542 34444443211000 0000 11112
Q ss_pred HHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 198 RQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 198 r~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
......+..+++...+.+|+|||+..+.
T Consensus 131 ~~~~~~~~~llr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 131 AKLEQQVLRLLRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred HHHHHHHHHHHHHcCCcEEEeechHHHh
Confidence 2333344456678899999999998754
No 283
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.51 E-value=9.6e-05 Score=63.22 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
|+|+|+||||||++|+.+|++++++++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999877444
No 284
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.51 E-value=0.00037 Score=79.06 Aligned_cols=149 Identities=16% Similarity=0.195 Sum_probs=100.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc-------cCCCCCh--H-HHHHHHHHHHHHHHHhCCceEE
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-------SGNAGEP--A-KLIRQRYREAADIIKKGKMCCL 216 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~-------s~~~Ge~--~-~~ir~~f~~A~~~~~~~~p~IL 216 (351)
.+-+++||-|.||+|||+|..++|+++|-..+.++.++-. +...++- + +....-|-.| .....-+
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~a-----mr~G~WV 1615 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHA-----MRDGGWV 1615 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHH-----hhcCCEE
Confidence 4456899999999999999999999999999999887531 1111220 0 1111223333 3344578
Q ss_pred EecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCC-CCCceEEEEeCCC------CCCcchhccCC
Q 018745 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDF------STLYAPLIRDG 289 (351)
Q Consensus 217 ~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~-~~~v~II~TTN~~------~~Ld~aLlR~g 289 (351)
++||+. ...|-+.+.|-..+|+....-+++++..-. .++-.|.+|-|.- ..|+..++-
T Consensus 1616 lLDEiN-------------LaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n-- 1680 (4600)
T COG5271 1616 LLDEIN-------------LASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN-- 1680 (4600)
T ss_pred Eeehhh-------------hhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--
Confidence 899983 234556677777888777777777755433 4555666666633 268888874
Q ss_pred cceEEEe-CCCHHHHHHHHHHhhcCCC
Q 018745 290 RMEKFYW-APTREDRIGVCKGIFRNDN 315 (351)
Q Consensus 290 Rfd~~i~-~P~~e~R~~Il~~~~~~~~ 315 (351)
||.+.+. ..+.++...|...++..-+
T Consensus 1681 RFsvV~~d~lt~dDi~~Ia~~~yp~v~ 1707 (4600)
T COG5271 1681 RFSVVKMDGLTTDDITHIANKMYPQVN 1707 (4600)
T ss_pred hhheEEecccccchHHHHHHhhCCccC
Confidence 7887665 4888889999888886533
No 285
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.51 E-value=0.00012 Score=67.99 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~ 171 (351)
|.-+||||+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 66799999999999999999863
No 286
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.51 E-value=5.4e-05 Score=76.84 Aligned_cols=132 Identities=13% Similarity=0.193 Sum_probs=73.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHH-------H----HHHHHhCCc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-------A----ADIIKKGKM 213 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~-------A----~~~~~~~~p 213 (351)
.+..+++.|++||||+++|+++.... +.+++.+++..+.+.+ .-..+|.. + ...+.....
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDL------IESELFGHEKGAFTGANTRRQGRFEQADG 229 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHH------HHHHhcCCCCCCCCCcccCCCCcEEECCC
Confidence 34579999999999999999998765 4678999987663211 11122221 0 000123346
Q ss_pred eEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcce-
Q 018745 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME- 292 (351)
Q Consensus 214 ~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd- 292 (351)
+.|||||||.+... ++..|++++++-....+.+. ......+.+|+|||..- ..+++.|+|.
T Consensus 230 gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l---~~~~~~~~f~~ 291 (463)
T TIGR01818 230 GTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGR--TPIKVDVRIVAATHQNL---EALVRQGKFRE 291 (463)
T ss_pred CeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCC--ceeeeeeEEEEeCCCCH---HHHHHcCCcHH
Confidence 78999999876432 23445555552111111110 11123567888887542 1233334443
Q ss_pred --------EEEeCCCHHHH
Q 018745 293 --------KFYWAPTREDR 303 (351)
Q Consensus 293 --------~~i~~P~~e~R 303 (351)
..+.+|.-.+|
T Consensus 292 ~L~~rl~~~~i~lPpLr~R 310 (463)
T TIGR01818 292 DLFHRLNVIRIHLPPLRER 310 (463)
T ss_pred HHHHHhCcceecCCCcccc
Confidence 35667776555
No 287
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.50 E-value=0.00024 Score=63.00 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=27.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
+.|+|.|+||+|||++|+.+++.++..++.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 579999999999999999999998776654443
No 288
>PRK09354 recA recombinase A; Provisional
Probab=97.50 E-value=0.00042 Score=68.55 Aligned_cols=83 Identities=16% Similarity=0.192 Sum_probs=52.2
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC----CCCC--------hHHHHHHHHHHHHHHH
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGE--------PAKLIRQRYREAADII 208 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~----~~Ge--------~~~~ir~~f~~A~~~~ 208 (351)
.|++.-+.++|+||||||||+||-.++.+. |-..+.++..+-.+. -.|. ......+.+..+..++
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 367777899999999999999999776543 555666554431110 0000 0001222333444455
Q ss_pred HhCCceEEEecccccccC
Q 018745 209 KKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 209 ~~~~p~IL~IDEID~l~~ 226 (351)
+...+.+|+||-+-++.+
T Consensus 135 ~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVP 152 (349)
T ss_pred hcCCCCEEEEeChhhhcc
Confidence 678899999999988875
No 289
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.49 E-value=9.9e-05 Score=65.37 Aligned_cols=32 Identities=38% Similarity=0.748 Sum_probs=26.5
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEeccCcc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l 185 (351)
|++.||||+|||++|+.+|+++|+.. ++.+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~ 33 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDL 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChH
Confidence 78999999999999999999998654 444444
No 290
>PRK08233 hypothetical protein; Provisional
Probab=97.47 E-value=0.00049 Score=60.48 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
+..|.+.|+||+|||+||+.++.+++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999999986
No 291
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.46 E-value=0.0014 Score=58.77 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.5
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
++....+.|.||.|+|||+|.+++...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 445567999999999999999999643
No 292
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.46 E-value=0.00029 Score=64.02 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg 174 (351)
.+++.||+|||||+++++++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999988874
No 293
>PRK14531 adenylate kinase; Provisional
Probab=97.44 E-value=0.00015 Score=64.89 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=26.6
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
.-|++.||||+|||++++.+|+++|+..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 358999999999999999999999987654
No 294
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.44 E-value=6.2e-05 Score=79.65 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=50.9
Q ss_pred CCCCchhHHHHHHHH-HHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc----cEEeccCcc------ccCC
Q 018745 121 GLYIAPAFMDKLVVH-ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----PIMMSAGEL------ESGN 189 (351)
Q Consensus 121 ~~~i~~~~~d~~~~~-i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~----~i~vs~s~l------~s~~ 189 (351)
+..+|+.+.+.++.| .++..+.. .+..+..++|+||||||||++|+++++.+... ++.+..+.+ ..-+
T Consensus 9 ~~~~~~~~~~~viG~~~a~~~l~~-a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~ 87 (608)
T TIGR00764 9 EIPVPERLIDQVIGQEEAVEIIKK-AAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVP 87 (608)
T ss_pred ccCcchhhHhhccCHHHHHHHHHH-HHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHH
Confidence 445677777765432 22222211 01123489999999999999999999998654 222333222 2233
Q ss_pred CCChHHHHHHHHHHH
Q 018745 190 AGEPAKLIRQRYREA 204 (351)
Q Consensus 190 ~Ge~~~~ir~~f~~A 204 (351)
.|...+.++..|..|
T Consensus 88 ~~~g~~~~~~~~~~~ 102 (608)
T TIGR00764 88 AGEGREIVEDYKKKA 102 (608)
T ss_pred HhhchHHHHHHHHHh
Confidence 466677888888877
No 295
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.44 E-value=0.0013 Score=58.91 Aligned_cols=19 Identities=32% Similarity=0.050 Sum_probs=18.1
Q ss_pred EEEEcCCCccHHHHHHHHH
Q 018745 152 LGIWGGKGQGKSFQCELVF 170 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA 170 (351)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 296
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.43 E-value=0.0005 Score=59.84 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
|+|.||+|||||++|+.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 478999999999999999999986554
No 297
>PRK14532 adenylate kinase; Provisional
Probab=97.43 E-value=0.00012 Score=65.30 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=25.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
.|+|.||||||||++|+.+|+++|+..+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 38899999999999999999999876553
No 298
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0022 Score=62.30 Aligned_cols=130 Identities=7% Similarity=0.063 Sum_probs=78.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCc-------------cEEeccCccccCCCCChHHHHHHHHHHHHHHH-HhC
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------PIMMSAGELESGNAGEPAKLIRQRYREAADII-KKG 211 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~-------------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~-~~~ 211 (351)
.+.+...||+|+.|.||+.+|+.+++.+-+. ++.++. .... -....++++-....-.. ..+
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~--i~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKD--LSKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCc--CCHHHHHHHHHHhccCCcccC
Confidence 3567899999999999999999999997331 111110 0010 11233444433331000 014
Q ss_pred CceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcc
Q 018745 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 291 (351)
Q Consensus 212 ~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRf 291 (351)
..-|++||+.|.+. ......|+..++ .+...+.+|.+|+.++.|.|.++.+++
T Consensus 90 ~~KvvII~~~e~m~-------------~~a~NaLLK~LE-------------EPp~~t~~il~~~~~~kll~TI~SRc~- 142 (299)
T PRK07132 90 QKKILIIKNIEKTS-------------NSLLNALLKTIE-------------EPPKDTYFLLTTKNINKVLPTIVSRCQ- 142 (299)
T ss_pred CceEEEEecccccC-------------HHHHHHHHHHhh-------------CCCCCeEEEEEeCChHhChHHHHhCeE-
Confidence 77899999987542 112345667777 335667788888888999998875433
Q ss_pred eEEEeC--CCHHHHHHHHHH
Q 018745 292 EKFYWA--PTREDRIGVCKG 309 (351)
Q Consensus 292 d~~i~~--P~~e~R~~Il~~ 309 (351)
. +.. |+.++..+.+..
T Consensus 143 -~-~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 143 -V-FNVKEPDQQKILAKLLS 160 (299)
T ss_pred -E-EECCCCCHHHHHHHHHH
Confidence 3 343 667776666643
No 299
>PRK00625 shikimate kinase; Provisional
Probab=97.42 E-value=0.00014 Score=64.99 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=28.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
.|+|.|+||+|||++++.+|++++++++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999988765
No 300
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.40 E-value=0.00065 Score=67.71 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.+|+||.|||..|||||+|--..+..+
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHhhcC
Confidence 459999999999999999999887543
No 301
>PRK06696 uridine kinase; Validated
Probab=97.40 E-value=0.00039 Score=64.15 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=33.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcc
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l 185 (351)
...|..|.+.|++|+|||++|+.++..+ |.+++.++...+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 3468899999999999999999999998 666776665544
No 302
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00013 Score=63.71 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=28.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
.||++|-||||||++|..||..+++..+.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 6899999999999999999999999988765
No 303
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.40 E-value=0.00032 Score=67.11 Aligned_cols=25 Identities=16% Similarity=-0.065 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
..++|.||+|+|||+|.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999998874
No 304
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.38 E-value=0.00038 Score=70.08 Aligned_cols=132 Identities=13% Similarity=0.161 Sum_probs=74.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 214 (351)
...++++|++||||+++|+++.... +.+|+.++++.+... ..-..+|.... ..+.....+
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES------LLESELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHH------HHHHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 4679999999999999999997665 467999998765211 11122232110 011233567
Q ss_pred EEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcce--
Q 018745 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME-- 292 (351)
Q Consensus 215 IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd-- 292 (351)
.|||||||.+... .+..|+..+++-....+.+. ......+.+|+||+..- ..++.+|+|.
T Consensus 236 tl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~~---~~~~~~~~~~~~ 297 (441)
T PRK10365 236 TLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDL---AAEVNAGRFRQD 297 (441)
T ss_pred EEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence 8999999876532 22344445542211111111 01123456888877632 2344566663
Q ss_pred -------EEEeCCCHHHHH
Q 018745 293 -------KFYWAPTREDRI 304 (351)
Q Consensus 293 -------~~i~~P~~e~R~ 304 (351)
..+.+|...+|.
T Consensus 298 l~~~l~~~~i~~ppLreR~ 316 (441)
T PRK10365 298 LYYRLNVVAIEVPSLRQRR 316 (441)
T ss_pred HHHHhccceecCCChhhcc
Confidence 455567777664
No 305
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.38 E-value=0.0017 Score=58.92 Aligned_cols=22 Identities=27% Similarity=0.057 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~ 171 (351)
..++|.||.|+|||++.++|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5799999999999999999983
No 306
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.37 E-value=0.00016 Score=64.29 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=25.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
|+|.||||+|||++|+.+|+.+|+..+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998765543
No 307
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.37 E-value=0.00054 Score=59.40 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=28.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l 185 (351)
++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 666666665444
No 308
>PRK06547 hypothetical protein; Provisional
Probab=97.37 E-value=0.0002 Score=63.89 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
..+..|++.|++|||||++|+.+++.+++.++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 5678999999999999999999999988776644
No 309
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.36 E-value=0.0024 Score=58.98 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh----CCccEEecc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~ 182 (351)
|+++...++|.|+||+|||+++..++... +.+++.++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 66666789999999999999999876654 677766654
No 310
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.35 E-value=0.00052 Score=72.18 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=68.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHH-----HHHHHHHHHHHHHHhCCceEEEecccccc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK-----LIRQRYREAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~-----~ir~~f~~A~~~~~~~~p~IL~IDEID~l 224 (351)
..|||+|.||||||.+.+.+++-+-...+ +++- .+.-+|-+.. .-+++..+. ..+-.....+-.|||+|++
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGk--GsSavGLTayVtrd~dtkqlVLes-GALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGK--GSSAVGLTAYVTKDPDTRQLVLES-GALVLSDNGICCIDEFDKM 538 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCccee-ecCC--ccchhcceeeEEecCccceeeeec-CcEEEcCCceEEchhhhhh
Confidence 57999999999999999999887633222 1111 0001110000 000111111 0111234456679999988
Q ss_pred cC-CCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCC-------------CCcchhccCCc
Q 018745 225 AG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 290 (351)
Q Consensus 225 ~~-~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~-------------~Ld~aLlR~gR 290 (351)
.. .|. +.-+...+.-+++.- -+. -...+.+.-||+++|..+ .|+|.|++ |
T Consensus 539 ~dStrS------vLhEvMEQQTvSIAK-------AGI-I~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--R 602 (804)
T KOG0478|consen 539 SDSTRS------VLHEVMEQQTLSIAK-------AGI-IASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--R 602 (804)
T ss_pred hHHHHH------HHHHHHHHhhhhHhh-------cce-eeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--h
Confidence 42 221 111111111111111 011 012366777899999432 68899997 9
Q ss_pred ceEEEeC---CCHH
Q 018745 291 MEKFYWA---PTRE 301 (351)
Q Consensus 291 fd~~i~~---P~~e 301 (351)
||..|.+ |++.
T Consensus 603 FDLIylllD~~DE~ 616 (804)
T KOG0478|consen 603 FDLIFLLLDKPDER 616 (804)
T ss_pred hcEEEEEecCcchh
Confidence 9998886 5554
No 311
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.35 E-value=0.0024 Score=60.51 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
|++....++++||||||||++|..+|.+. |.++++++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 67777899999999999999999876543 556665554
No 312
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.34 E-value=0.00019 Score=60.65 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=27.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
|.+.|+||||||++|+.+|.+++++++...
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999877665
No 313
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.00095 Score=62.43 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=43.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC--------ccEEec-cCccccCCCCChHHHHHHHHH------HHH---HHHHhC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGI--------NPIMMS-AGELESGNAGEPAKLIRQRYR------EAA---DIIKKG 211 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~--------~~i~vs-~s~l~s~~~Ge~~~~ir~~f~------~A~---~~~~~~ 211 (351)
+..|+.||||||||+|.+-||.-+.. .+..++ .+++.....|-+.--+..+.+ ++. ..++..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 35889999999999999999987622 223332 233333333333221111111 111 223578
Q ss_pred CceEEEecccc
Q 018745 212 KMCCLMINDLD 222 (351)
Q Consensus 212 ~p~IL~IDEID 222 (351)
.|.++++|||.
T Consensus 218 ~PEViIvDEIG 228 (308)
T COG3854 218 SPEVIIVDEIG 228 (308)
T ss_pred CCcEEEEeccc
Confidence 99999999993
No 314
>PRK14527 adenylate kinase; Provisional
Probab=97.33 E-value=0.0002 Score=64.28 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
..|..+++.||||+|||++|+.+|+++++..+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 45678999999999999999999999987654
No 315
>PRK06217 hypothetical protein; Validated
Probab=97.31 E-value=0.00022 Score=63.74 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
-|+|.|+||+|||++|+++++.++++++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876554
No 316
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.31 E-value=0.0021 Score=65.95 Aligned_cols=78 Identities=19% Similarity=0.142 Sum_probs=49.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccC------CCCChH--------HHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGEPA--------KLIRQRYREAADI 207 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~------~~Ge~~--------~~ir~~f~~A~~~ 207 (351)
|+.+...+||.|+||+|||+|+..++..+ +.++++++..+-... ..|-.. ..+.++ .+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I----~~~ 165 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQI----CAN 165 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHH----HHH
Confidence 66777889999999999999999987765 346667665432110 001000 011111 123
Q ss_pred HHhCCceEEEecccccccC
Q 018745 208 IKKGKMCCLMINDLDAGAG 226 (351)
Q Consensus 208 ~~~~~p~IL~IDEID~l~~ 226 (351)
+...+|.+|+||.|-.+..
T Consensus 166 i~~~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 166 IEEENPQACVIDSIQTLYS 184 (454)
T ss_pred HHhcCCcEEEEecchhhcc
Confidence 3567899999999987654
No 317
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.31 E-value=0.00069 Score=64.86 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh-CCccEEeccCcc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGEL 185 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l-g~~~i~vs~s~l 185 (351)
+..|+|.|+||||||++|+.+++.+ +. ..++...+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~--~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKA--VNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCC--EEEeccHH
Confidence 4678999999999999999999998 54 44454444
No 318
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.31 E-value=0.00029 Score=65.83 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|.-|+|.||||+|||++|+.+|+.+|++++.+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 455599999999999999999999999876644
No 319
>PF14516 AAA_35: AAA-like domain
Probab=97.31 E-value=0.013 Score=57.61 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=40.4
Q ss_pred CCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcccc
Q 018745 121 GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES 187 (351)
Q Consensus 121 ~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s 187 (351)
.+||...-.|+.+....+ ++..-+.|+||..+|||+|...+.+.+ |+..+.++...+.+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~--------~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~ 72 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIV--------QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGS 72 (331)
T ss_pred CcccCchHHHHHHHHHHh--------cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCC
Confidence 456666644443333221 224578999999999999999987765 77788888776543
No 320
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00023 Score=63.99 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=25.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEeccCc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~ 184 (351)
-|+|-||||+||||+|+.||+.++++ .++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~--hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP--HLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc--EEcHhH
Confidence 37899999999999999999996654 444333
No 321
>PRK13949 shikimate kinase; Provisional
Probab=97.30 E-value=0.00023 Score=63.17 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=28.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
.|+|.|+||+|||++++.+|+.++++++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999877655
No 322
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.30 E-value=0.00084 Score=60.67 Aligned_cols=122 Identities=16% Similarity=0.064 Sum_probs=55.2
Q ss_pred EEEEEcCCCccHHHHHHHH-HHHh---CCccEEeccCcccc----CCCCChHH--HH----------HHHHHHHHHHHHh
Q 018745 151 ILGIWGGKGQGKSFQCELV-FAKM---GINPIMMSAGELES----GNAGEPAK--LI----------RQRYREAADIIKK 210 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aI-A~~l---g~~~i~vs~s~l~s----~~~Ge~~~--~i----------r~~f~~A~~~~~~ 210 (351)
+.+++|.||+|||+.|-.. .... |..++. +...|.- ...+.... ++ .+.+... ...
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDW---RKL 77 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHH---TTS
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhh---ccc
Confidence 5789999999999988654 3332 554443 4332211 10011000 00 0011111 011
Q ss_pred CCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCc
Q 018745 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 290 (351)
Q Consensus 211 ~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gR 290 (351)
...++|+|||+....+.+... .......+ +.+. .....+.-||++|.++..||+.+++ .
T Consensus 78 ~~~~liviDEa~~~~~~r~~~--~~~~~~~~-----~~l~------------~hRh~g~diiliTQ~~~~id~~ir~--l 136 (193)
T PF05707_consen 78 PKGSLIVIDEAQNFFPSRSWK--GKKVPEII-----EFLA------------QHRHYGWDIILITQSPSQIDKFIRD--L 136 (193)
T ss_dssp GTT-EEEETTGGGTSB---T---T----HHH-----HGGG------------GCCCTT-EEEEEES-GGGB-HHHHC--C
T ss_pred CCCcEEEEECChhhcCCCccc--cccchHHH-----HHHH------------HhCcCCcEEEEEeCCHHHHhHHHHH--H
Confidence 267899999999988876521 01111222 1121 1234567899999999999998764 6
Q ss_pred ceEEEeC
Q 018745 291 MEKFYWA 297 (351)
Q Consensus 291 fd~~i~~ 297 (351)
.+..+..
T Consensus 137 ve~~~~~ 143 (193)
T PF05707_consen 137 VEYHYHC 143 (193)
T ss_dssp EEEEEEE
T ss_pred HheEEEE
Confidence 6666553
No 323
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.30 E-value=0.0012 Score=69.48 Aligned_cols=67 Identities=21% Similarity=0.186 Sum_probs=49.4
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC----ccEEeccCcccc
Q 018745 120 DGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELES 187 (351)
Q Consensus 120 ~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~----~~i~vs~s~l~s 187 (351)
.+..+|+.|+-.-+..+...++. +..+.+..|+|+|+||||||++|+++|..++. +++.++...+..
T Consensus 364 ~G~~pP~~f~rpeV~~iL~~~~~-~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~ 434 (568)
T PRK05537 364 EGLEIPEWFSFPEVVAELRRTYP-PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRK 434 (568)
T ss_pred CCCCCChhhcHHHHHHHHHHHhc-cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHH
Confidence 45667777877666667666654 34456778999999999999999999999875 356666655543
No 324
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.30 E-value=0.00055 Score=64.13 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=27.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l 185 (351)
|+|.|+||+|||++|+.+++.+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 456666655434
No 325
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.29 E-value=0.00026 Score=62.55 Aligned_cols=29 Identities=41% Similarity=0.698 Sum_probs=25.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
.+++.||||+|||++|+.+++++|+..+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 68899999999999999999999876543
No 326
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.29 E-value=0.0026 Score=58.45 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccC
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s 183 (351)
|++....++|.|+||+|||.+|..++.+. |..++.++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 67777899999999999999999887543 6666666543
No 327
>PRK04296 thymidine kinase; Provisional
Probab=97.28 E-value=0.00084 Score=60.61 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=41.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccC--c------cccCCCCCh-----HHHHHHHHHHHHHHHHhCCc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG--E------LESGNAGEP-----AKLIRQRYREAADIIKKGKM 213 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s--~------l~s~~~Ge~-----~~~ir~~f~~A~~~~~~~~p 213 (351)
...+++||+|+|||+++..++..+ +..++.++.+ . +.+. .|.. .....+++..+.+ ....+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~--~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEE--EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHh--hCCCC
Confidence 368999999999999998887765 5555655431 1 1111 1211 0112333433322 24567
Q ss_pred eEEEecccc
Q 018745 214 CCLMINDLD 222 (351)
Q Consensus 214 ~IL~IDEID 222 (351)
.+|+|||+.
T Consensus 80 dvviIDEaq 88 (190)
T PRK04296 80 DCVLIDEAQ 88 (190)
T ss_pred CEEEEEccc
Confidence 899999994
No 328
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.28 E-value=0.0015 Score=58.10 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=28.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEeccC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s 183 (351)
.+++.||||+|||++|..++.+++.+.+.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 589999999999999999999988776665544
No 329
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.26 E-value=0.00088 Score=67.35 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=45.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCc------cEEeccC--------------ccccCCCCChHHH-H---HHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG--------------ELESGNAGEPAKL-I---RQRYREAA 205 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~------~i~vs~s--------------~l~s~~~Ge~~~~-i---r~~f~~A~ 205 (351)
.-++|.||||||||+|++.|++....+ ++.+... ++.....+++... + ......|.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 458999999999999999999986432 2222211 0111222333322 1 22233333
Q ss_pred HHHHhCCceEEEeccccccc
Q 018745 206 DIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 206 ~~~~~~~p~IL~IDEID~l~ 225 (351)
.....++..+|||||+..++
T Consensus 249 ~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHcCCCeEEEEEChhHHH
Confidence 33346788999999998764
No 330
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.26 E-value=0.0025 Score=58.43 Aligned_cols=24 Identities=21% Similarity=0.011 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHH
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~ 171 (351)
....++|.||.|+|||++.+.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999873
No 331
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.26 E-value=0.0012 Score=58.16 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN 189 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~ 189 (351)
|..|.|+|.||+|||++|+++.+.+ |.+++.+++..+...+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 5679999999999999999999887 7889999888776543
No 332
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.25 E-value=0.0061 Score=64.37 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=73.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC--CccEEeccCccccCCCCChHHHHHHHHHHH-----HHHHHhCCceEEEecccc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREA-----ADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg--~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A-----~~~~~~~~p~IL~IDEID 222 (351)
.||+|-|++||+||+++++++.-+. .+|..+..+.-.+..+|.. .|......- -.++......|||+||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 5899999999999999999999874 4666666554444455431 111111110 011123345799999995
Q ss_pred cccCCCCCCccchhhhHHHHHHHHHhhcCCccccC--CCCcccCCCCCceEEEEeCCC---CCCcchhccCCcceEEEeC
Q 018745 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQL--PGMYNKEENPRVPIIVTGNDF---STLYAPLIRDGRMEKFYWA 297 (351)
Q Consensus 223 ~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l--~~~~~~~~~~~v~II~TTN~~---~~Ld~aLlR~gRfd~~i~~ 297 (351)
.+. ..+...|++-++.-. +.+ .+. ......+..+|+|-|.. ..|.++++ .||+..+.+
T Consensus 104 ~~~-------------~~~~~aLleame~G~-vtIeR~G~-s~~~Pa~F~LIat~~~~~~~~~L~~~lL--DRf~l~v~v 166 (584)
T PRK13406 104 RLE-------------PGTAARLAAALDTGE-VRLERDGL-ALRLPARFGLVALDEGAEEDERAPAALA--DRLAFHLDL 166 (584)
T ss_pred cCC-------------HHHHHHHHHHHhCCc-EEEEECCc-EEecCCCcEEEecCCChhcccCCCHHhH--hheEEEEEc
Confidence 332 223445555555211 111 111 01122344566653322 35888888 499999997
No 333
>PRK14530 adenylate kinase; Provisional
Probab=97.23 E-value=0.00029 Score=64.56 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=26.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|+|.||||+|||++|+.+|+.++++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 488899999999999999999999876643
No 334
>PRK13948 shikimate kinase; Provisional
Probab=97.23 E-value=0.00038 Score=62.73 Aligned_cols=36 Identities=17% Similarity=-0.020 Sum_probs=32.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
.++|..|+|.|++|||||++++.+|+.++++++..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 356789999999999999999999999999988555
No 335
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.23 E-value=0.0025 Score=58.22 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=27.2
Q ss_pred CCCCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 143 ~~~~~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.|+.+....++|.|+-|+|||++++.++.+
T Consensus 46 ~pg~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 46 EPGCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCCCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 578888899999999999999999999766
No 336
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.22 E-value=0.0025 Score=58.77 Aligned_cols=22 Identities=36% Similarity=0.152 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~ 171 (351)
..++|.||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999864
No 337
>PRK04040 adenylate kinase; Provisional
Probab=97.22 E-value=0.00035 Score=63.19 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh--CCcc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM--GINP 177 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l--g~~~ 177 (351)
|..++++|+||||||++++.+++++ ++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 6689999999999999999999999 5544
No 338
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.22 E-value=0.0025 Score=57.08 Aligned_cols=72 Identities=15% Similarity=0.316 Sum_probs=47.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCccEEe---cc----Ccc-------------ccC--CCC----ChHHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMM---SA----GEL-------------ESG--NAG----EPAKLIRQRY 201 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l---g~~~i~v---s~----s~l-------------~s~--~~G----e~~~~ir~~f 201 (351)
-+.+|+++|.|||+.|-.+|-.+ |..++++ .. ++. ... |.. +..+..++.+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 47788999999999999887665 5555433 21 221 000 111 1224466777
Q ss_pred HHHHHHHHhCCceEEEecccc
Q 018745 202 REAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 202 ~~A~~~~~~~~p~IL~IDEID 222 (351)
..|.+.+..+...+|++|||-
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~ 107 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELT 107 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhH
Confidence 777777778889999999984
No 339
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.20 E-value=0.0022 Score=60.50 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh----CCccEEecc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~ 182 (351)
|+..-..++|.||||+|||+++..+|..+ |..++.++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 45556689999999999999999887654 666666554
No 340
>PRK02496 adk adenylate kinase; Provisional
Probab=97.19 E-value=0.00035 Score=62.21 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=25.7
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
+++.||||+|||++|+.+|+.+++..+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78899999999999999999998875543
No 341
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.19 E-value=0.00032 Score=71.60 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=70.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHH-------HHHH----HHhCC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-------AADI----IKKGK 212 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~-------A~~~----~~~~~ 212 (351)
+.+..|||.|++||||-..|++|-+.. .-+|+.++++-+-... +-.++|.. |... .....
T Consensus 244 ~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesL------lESELFGHeKGAFTGA~~~r~GrFElAd 317 (550)
T COG3604 244 KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESL------LESELFGHEKGAFTGAINTRRGRFELAD 317 (550)
T ss_pred cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHH------HHHHHhcccccccccchhccCcceeecC
Confidence 456789999999999999999997766 4589999998663211 11223322 2000 00124
Q ss_pred ceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccCCcce
Q 018745 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292 (351)
Q Consensus 213 p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~gRfd 292 (351)
..-||+|||-.+.- .++.-|+..+.+-+-.-+++- ..-.-.|-||++||+- |-. ..|.|+|-
T Consensus 318 GGTLFLDEIGelPL-------------~lQaKLLRvLQegEieRvG~~--r~ikVDVRiIAATNRD--L~~-~V~~G~FR 379 (550)
T COG3604 318 GGTLFLDEIGELPL-------------ALQAKLLRVLQEGEIERVGGD--RTIKVDVRVIAATNRD--LEE-MVRDGEFR 379 (550)
T ss_pred CCeEechhhccCCH-------------HHHHHHHHHHhhcceeecCCC--ceeEEEEEEEeccchh--HHH-HHHcCcch
Confidence 56899999954332 233444444442221111111 1124457899999973 322 45566664
No 342
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.01 Score=57.34 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=79.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEE----------------eccCcccc-CCCCC--hHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------------MSAGELES-GNAGE--PAKLIRQRYREAA 205 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~----------------vs~s~l~s-~~~Ge--~~~~ir~~f~~A~ 205 (351)
..+.|..+||+|| .||+.+|+++|+.+-+.-.. -+..++.- .-.|. ....+|++-..+.
T Consensus 20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~ 97 (290)
T PRK07276 20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS 97 (290)
T ss_pred cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence 4477889999996 68999999999887442100 00111100 00111 2345666555542
Q ss_pred HHHHhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchh
Q 018745 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 285 (351)
Q Consensus 206 ~~~~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aL 285 (351)
..-..+...|++||++|.+.. .....|+..++ ++..++.+|.+|+.++.|-|.+
T Consensus 98 ~~p~~~~~kV~II~~ad~m~~-------------~AaNaLLKtLE-------------EPp~~t~~iL~t~~~~~lLpTI 151 (290)
T PRK07276 98 QSGYEGKQQVFIIKDADKMHV-------------NAANSLLKVIE-------------EPQSEIYIFLLTNDENKVLPTI 151 (290)
T ss_pred hCcccCCcEEEEeehhhhcCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEECChhhCchHH
Confidence 111245567999999987642 12345666677 4456678999999999999988
Q ss_pred ccCCcceEEEeCCCHHHHHHHH
Q 018745 286 IRDGRMEKFYWAPTREDRIGVC 307 (351)
Q Consensus 286 lR~gRfd~~i~~P~~e~R~~Il 307 (351)
+. |+-.+..-|+.++-.+++
T Consensus 152 ~S--Rcq~i~f~~~~~~~~~~L 171 (290)
T PRK07276 152 KS--RTQIFHFPKNEAYLIQLL 171 (290)
T ss_pred HH--cceeeeCCCcHHHHHHHH
Confidence 75 544433335555544554
No 343
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.18 E-value=0.0038 Score=56.57 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=19.8
Q ss_pred cEEEEEcCCCccHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVF 170 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA 170 (351)
+.++|.||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999988
No 344
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.17 E-value=0.00072 Score=70.70 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC-CccEEecc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG-INPIMMSA 182 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg-~~~i~vs~ 182 (351)
.++++|.||||+|||+||++||+.+. .+++.+.+
T Consensus 103 ~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 103 KQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 46999999999999999999999884 45565555
No 345
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.17 E-value=0.00042 Score=60.44 Aligned_cols=30 Identities=30% Similarity=0.321 Sum_probs=21.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
|.|.|+||||||+|++.+++. |.+++.-.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~a 31 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYA 31 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TT
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecH
Confidence 679999999999999999998 877663333
No 346
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.17 E-value=0.00035 Score=63.80 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
|+|.||||+|||++|+.+|+++|+..+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998776543
No 347
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.17 E-value=0.0016 Score=70.53 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=50.7
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH---hCCccEEeccCcccc----CCCCCh--------HHHHHHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES----GNAGEP--------AKLIRQRYREAADIIK 209 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~---lg~~~i~vs~s~l~s----~~~Ge~--------~~~ir~~f~~A~~~~~ 209 (351)
|++....++|+||||||||+||..++.. .|-.++.++..+-.+ ...|.. .......+..+..+++
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 6777789999999999999999764432 355555555443211 000000 0011123333444456
Q ss_pred hCCceEEEecccccccC
Q 018745 210 KGKMCCLMINDLDAGAG 226 (351)
Q Consensus 210 ~~~p~IL~IDEID~l~~ 226 (351)
...+.+|+||-|.++..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 77899999999998886
No 348
>PF13245 AAA_19: Part of AAA domain
Probab=97.16 E-value=0.00071 Score=52.33 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=22.5
Q ss_pred cEEEEEcCCCccHH-HHHHHHHHHh------CCccEEeccC
Q 018745 150 LILGIWGGKGQGKS-FQCELVFAKM------GINPIMMSAG 183 (351)
Q Consensus 150 ~glLL~GppGtGKT-~LA~aIA~~l------g~~~i~vs~s 183 (351)
..+++.|||||||| ++++.++... +-.++.+...
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 35667999999999 5555666555 3345555443
No 349
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.0057 Score=58.18 Aligned_cols=119 Identities=8% Similarity=-0.078 Sum_probs=72.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccC--------------ccccCC-CC--ChHHHHHHHHHHHHHHH-
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG--------------ELESGN-AG--EPAKLIRQRYREAADII- 208 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s--------------~l~s~~-~G--e~~~~ir~~f~~A~~~~- 208 (351)
.+|..+||+||.|+||..+|.++|+.+-+.--.-.++ ++.--. .+ -....+|++-+....-.
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4678999999999999999999999874421000011 110000 00 11233444433321000
Q ss_pred HhCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcchhccC
Q 018745 209 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 288 (351)
Q Consensus 209 ~~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~aLlR~ 288 (351)
..+...|++|+++|.+- ......|+..++ ++..++.+|.+|+.++.+.|.++.
T Consensus 85 e~~~~KV~II~~ae~m~-------------~~AaNaLLK~LE-------------EPp~~t~fiLit~~~~~lLpTI~S- 137 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN-------------KQSANSLLKLIE-------------EPPKNTYGIFTTRNENNILNTILS- 137 (261)
T ss_pred hcCCCEEEEeccHhhhC-------------HHHHHHHHHhhc-------------CCCCCeEEEEEECChHhCchHhhh-
Confidence 02346799999998653 223456677777 456778899999999999998875
Q ss_pred CcceE
Q 018745 289 GRMEK 293 (351)
Q Consensus 289 gRfd~ 293 (351)
|+-.
T Consensus 138 -RCq~ 141 (261)
T PRK05818 138 -RCVQ 141 (261)
T ss_pred -heee
Confidence 5444
No 350
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.15 E-value=0.0033 Score=57.18 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=48.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh---CCccEEec---cC----cc--cc--------------CCCC----ChHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMS---AG----EL--ES--------------GNAG----EPAKLIRQ 199 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs---~s----~l--~s--------------~~~G----e~~~~ir~ 199 (351)
..|.+||++|.|||+.|-.+|-.+ |..+.++- +. +. .. .+.. +..+..++
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 479999999999999999887654 44444331 11 00 00 0111 11245666
Q ss_pred HHHHHHHHHHhCCceEEEecccc
Q 018745 200 RYREAADIIKKGKMCCLMINDLD 222 (351)
Q Consensus 200 ~f~~A~~~~~~~~p~IL~IDEID 222 (351)
.+..|.+.+..+...+|++|||-
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~ 125 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELT 125 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhh
Confidence 77788777778889999999984
No 351
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.15 E-value=0.0004 Score=63.60 Aligned_cols=28 Identities=36% Similarity=0.498 Sum_probs=25.5
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
|++.||||+|||++|+.+|+++++..+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 8899999999999999999999976654
No 352
>PRK14528 adenylate kinase; Provisional
Probab=97.15 E-value=0.00046 Score=62.06 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.3
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
-+++.||||+|||++|+.+|+.+|++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 488999999999999999999999876543
No 353
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.14 E-value=0.0011 Score=63.39 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=41.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccc---cCCC-CChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE---SGNA-GEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~---s~~~-Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
-|+|+|.||+|||++|+.|+..+ +..++.++...+. +.|. ...++.+|..+..+.+.. -.+..|+++|+.--
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~-ls~~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA-LSKDTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH-HTT-SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh-hccCeEEEEeCCch
Confidence 47899999999999999999875 5667777654443 1221 234677776666553322 23457999999654
Q ss_pred c
Q 018745 224 G 224 (351)
Q Consensus 224 l 224 (351)
+
T Consensus 82 i 82 (270)
T PF08433_consen 82 I 82 (270)
T ss_dssp S
T ss_pred H
Confidence 4
No 354
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.13 E-value=0.0029 Score=55.50 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+++...+.|.||+|+|||+|.++|+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455689999999999999999998764
No 355
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.13 E-value=0.00049 Score=60.39 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=27.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
.|+|.|++|||||++++.+|+.+|++++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 488899999999999999999999987754
No 356
>PRK13946 shikimate kinase; Provisional
Probab=97.12 E-value=0.00043 Score=61.99 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
++.|+|.|++|||||++++.+|+.+|++++..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 457999999999999999999999999987554
No 357
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.12 E-value=0.00089 Score=66.74 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=43.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCc-----cEEeccC---------------ccccCCCCChH-HHHH---HHHHHHHH
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAG---------------ELESGNAGEPA-KLIR---QRYREAAD 206 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~-----~i~vs~s---------------~l~s~~~Ge~~-~~ir---~~f~~A~~ 206 (351)
-.||.||||||||+|++.+++.+..+ ++.+-.. .+......++. ..++ .....|..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~ 214 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKR 214 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999977431 2221110 11111111222 2121 22233434
Q ss_pred HHHhCCceEEEeccccccc
Q 018745 207 IIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 207 ~~~~~~p~IL~IDEID~l~ 225 (351)
+...++..+|++||+..++
T Consensus 215 f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 215 LVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHcCCCEEEEEeCcHHHH
Confidence 4447889999999998764
No 358
>PRK04328 hypothetical protein; Provisional
Probab=97.12 E-value=0.0024 Score=60.19 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=28.5
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH---hCCccEEecc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~---lg~~~i~vs~ 182 (351)
|++....+|++||||||||.||..++.+ .|.+.+.++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 6777789999999999999999876543 2555555543
No 359
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.0004 Score=61.42 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=25.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
-|-+.||||||||++|+.+|+.+|++++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~v 29 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLV 29 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCcee
Confidence 3678999999999999999999999866
No 360
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.12 E-value=0.0011 Score=65.40 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=22.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
..+++.||+|+|||++.+++..++.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5789999999999999999988764
No 361
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.10 E-value=0.004 Score=54.57 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+...++.||.|+|||.+.++++-.+
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999986544
No 362
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.09 E-value=0.0024 Score=57.27 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
---++|.||+|||||+|.+++|.-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3468999999999999999999754
No 363
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.09 E-value=0.0027 Score=61.87 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=26.2
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.|++....++|+||||||||.+|..+|...
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 367778899999999999999999998764
No 364
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.08 E-value=0.0016 Score=62.95 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=26.1
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.|++....++++||||||||.+|..+|...
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367777889999999999999999988764
No 365
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.08 E-value=0.00064 Score=59.52 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=24.5
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCc---cEEeccC
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAG 183 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~---~i~vs~s 183 (351)
.....+..++|+|++|+|||++.++++..+... ++...+.
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~ 61 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCD 61 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEE
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 344556899999999999999999988776433 5555444
No 366
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.08 E-value=0.0027 Score=57.79 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s 183 (351)
|+.++|.||+|+|||+.+--+|.++ +..+..++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 6789999999999999999888776 4445555544
No 367
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.06 E-value=0.0024 Score=62.42 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~ 171 (351)
|++.-....|+||||||||.||..+|-
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 677778999999999999999988764
No 368
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.06 E-value=0.0035 Score=55.79 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=27.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEeccC
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s 183 (351)
+|+.|++|+|||.+|..++...+.+++++.-.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 68999999999999999998877777666544
No 369
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0028 Score=56.98 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=37.1
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcccc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES 187 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s 187 (351)
....|..|.|+|.+|+|||++|.++++++ |.+.+.+++..+..
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 34567789999999999999999999987 88999999987753
No 370
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.0042 Score=53.74 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
++...++|.||+|+|||+|.++++..+.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446899999999999999999997653
No 371
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.00086 Score=66.97 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....++|.||+|+|||+++..+|..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999764
No 372
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.03 E-value=0.00046 Score=59.49 Aligned_cols=30 Identities=33% Similarity=0.559 Sum_probs=24.3
Q ss_pred EEcCCCccHHHHHHHHHHHhCCccEEeccCcc
Q 018745 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (351)
Q Consensus 154 L~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l 185 (351)
|.||||+|||++|+.||++.|+. .++.+++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~l 30 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDL 30 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHH
Confidence 57999999999999999999865 4444443
No 373
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.02 E-value=0.0044 Score=64.20 Aligned_cols=81 Identities=10% Similarity=0.031 Sum_probs=50.3
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh----CCccEEeccCccccC-------------------C-------CC---
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESG-------------------N-------AG--- 191 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~s~l~s~-------------------~-------~G--- 191 (351)
|++....+||+|+||+|||+|+..++.+. |.+++.++..+-... . ..
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 67777899999999999999999775432 555555544321100 0 00
Q ss_pred ---ChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 018745 192 ---EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (351)
Q Consensus 192 ---e~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~l~ 225 (351)
.....+..++....+.+...++..|+||-+..+.
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~ 143 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALF 143 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHH
Confidence 0001233444444445567788999999997654
No 374
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.02 E-value=0.00085 Score=59.61 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
+..|+|.||+|+|||++++.+|+.++++++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4469999999999999999999999988776553
No 375
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.02 E-value=0.00056 Score=56.18 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 018745 152 LGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~l 173 (351)
|+|.|+||+|||++|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 376
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.01 E-value=0.0026 Score=57.56 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=34.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh-CCccEEeccCccccCC
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGN 189 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l-g~~~i~vs~s~l~s~~ 189 (351)
-..|..+++.|+||+|||+++..+..++ +-.++.++..++....
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 3679999999999999999999999988 7778889888876543
No 377
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.00052 Score=61.25 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=27.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
.|+++|.||||||++|+.++ ++|+..+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9999877665
No 378
>PRK01184 hypothetical protein; Provisional
Probab=97.01 E-value=0.00066 Score=60.32 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=25.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEe
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~v 180 (351)
..|+|.||||+|||++++ +++++|++++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 368999999999999987 788889876644
No 379
>PRK04182 cytidylate kinase; Provisional
Probab=97.00 E-value=0.00071 Score=59.25 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=26.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
.|+|.|++|||||++++.+|+.+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58899999999999999999999987664
No 380
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.00037 Score=74.13 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=74.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHH-----HHHHHHHHhCCceEEEecccccc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY-----REAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f-----~~A~~~~~~~~p~IL~IDEID~l 224 (351)
..|||.|.||+|||.|.+.+++-+-..++.--.+ +.-+|-++..+++-. -+| ..+....+.|..|||+|.+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkg---ss~~GLTAav~rd~~tge~~Lea-GALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKG---SSAAGLTAAVVRDKVTGEWVLEA-GALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEcccc---ccccCceeEEEEccCCCeEEEeC-CEEEEecCCEEEEEeccCC
Confidence 5799999999999999999998765443322111 111222211122111 111 0111346789999999976
Q ss_pred cCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCC-cccCCCCCceEEEEeCCCC-------------CCcchhccCCc
Q 018745 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-YNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 290 (351)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~-~~~~~~~~v~II~TTN~~~-------------~Ld~aLlR~gR 290 (351)
-.... ..+.+.++.. .+++..- .....+.+.-|++++|... .|+++|+. |
T Consensus 396 ~~~dr-------------~aihEaMEQQ-tIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--R 459 (682)
T COG1241 396 NEEDR-------------VAIHEAMEQQ-TISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--R 459 (682)
T ss_pred ChHHH-------------HHHHHHHHhc-EeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--h
Confidence 43211 1122222211 0111110 1112345666788888654 57888885 9
Q ss_pred ceEEEeC---CCHHHHHHH
Q 018745 291 MEKFYWA---PTREDRIGV 306 (351)
Q Consensus 291 fd~~i~~---P~~e~R~~I 306 (351)
||..+.+ |+++.=..|
T Consensus 460 FDLifvl~D~~d~~~D~~i 478 (682)
T COG1241 460 FDLIFVLKDDPDEEKDEEI 478 (682)
T ss_pred CCeeEEecCCCCccchHHH
Confidence 9999886 777644444
No 381
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.99 E-value=0.01 Score=53.27 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....+.|.||.|+|||+|.++++...
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3445689999999999999999999765
No 382
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.99 E-value=0.00093 Score=57.33 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~ 176 (351)
+....++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 445689999999999999999999999875
No 383
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.99 E-value=0.00057 Score=61.59 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l 173 (351)
..+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999998777666665
No 384
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.99 E-value=0.0055 Score=60.62 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
|++.-....|+||||||||.||..+|-.
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~ 149 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVT 149 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHH
Confidence 6677788999999999999999988643
No 385
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.98 E-value=0.004 Score=54.72 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=26.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCccEEeccC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s 183 (351)
.+++.||||+|||+++..+|..+ +..+..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999998775 5666666654
No 386
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.98 E-value=0.0016 Score=63.29 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=42.7
Q ss_pred CchhHHHHHHHHHHHHhhh-CCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 124 IAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 124 i~~~~~d~~~~~i~k~~l~-~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
++++-+ +.+.++++.++. ...+.++..|.|.|+||||||++++.+|+.+|++++.+.
T Consensus 108 l~~~~~-~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQL-ARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHH-HHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 344433 335566666553 345667789999999999999999999999999988543
No 387
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.95 E-value=0.00083 Score=58.41 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=26.1
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
.|.|.|++|+|||++|+.+++.+|++++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 58999999999999999999999987553
No 388
>PLN02674 adenylate kinase
Probab=96.94 E-value=0.00091 Score=63.08 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l 185 (351)
+.+..|+|.||||+|||++|+.+|+++++..+ +.+++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~Gdl 65 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDM 65 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHH
Confidence 44556899999999999999999999987644 44444
No 389
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.93 E-value=0.0011 Score=62.80 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=42.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCc---cEEec-cCccccCCC-------CChHHHHHHHHHHHHHHHHhCCceE
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMS-AGELESGNA-------GEPAKLIRQRYREAADIIKKGKMCC 215 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~---~i~vs-~s~l~s~~~-------Ge~~~~ir~~f~~A~~~~~~~~p~I 215 (351)
+....+++.||+|||||++.+++..++.-. ++.+. ..++.-... ........++...+ -+..|.+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~----LR~~pD~ 200 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSA----LRQDPDV 200 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHH----TTS--SE
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHH----hcCCCCc
Confidence 335689999999999999999999987433 33332 222211100 01112233444444 5788999
Q ss_pred EEeccc
Q 018745 216 LMINDL 221 (351)
Q Consensus 216 L~IDEI 221 (351)
|++.|+
T Consensus 201 iiigEi 206 (270)
T PF00437_consen 201 IIIGEI 206 (270)
T ss_dssp EEESCE
T ss_pred cccccc
Confidence 999999
No 390
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.93 E-value=0.0065 Score=52.28 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
++....+.|.||+|+|||+|.++++...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3445689999999999999999998865
No 391
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.93 E-value=0.00081 Score=60.10 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=29.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
..|.|.|++|+|||++.+++|+.++.+|+.++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 35889999999999999999999999998665
No 392
>PRK14526 adenylate kinase; Provisional
Probab=96.93 E-value=0.00084 Score=61.87 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.5
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEeccCcc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l 185 (351)
|+|.||||||||++++.+|+++++..+ +.+++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~l 34 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHI--STGDL 34 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee--ecChH
Confidence 789999999999999999999887654 44444
No 393
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.91 E-value=0.0017 Score=63.04 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=29.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCcc
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 177 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~ 177 (351)
..+.|..|++.|++|||||++|..+|..++.+.
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 446789999999999999999999999998873
No 394
>PRK12338 hypothetical protein; Provisional
Probab=96.91 E-value=0.00096 Score=65.22 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
..|..|++.|+||||||++|+++|..+|+..+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 35789999999999999999999999998643
No 395
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.91 E-value=0.0014 Score=49.39 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=24.2
Q ss_pred EEEEcCCCccHHHHHHHHHHHh-CCccEEecc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKM-GINPIMMSA 182 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~l-g~~~i~vs~ 182 (351)
+.+.|+||+|||++++++++.+ +..+..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999996 344444443
No 396
>PRK14974 cell division protein FtsY; Provisional
Probab=96.91 E-value=0.0097 Score=58.72 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccC
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s 183 (351)
.|..++|.||||+|||+++..+|..+ |..+..+.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 47899999999999999988888765 5555555543
No 397
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.89 E-value=0.0015 Score=59.31 Aligned_cols=37 Identities=30% Similarity=0.628 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC-ccEEeccC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAG 183 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~-~~i~vs~s 183 (351)
+.|..|.|.|++|||||+|+++|++.++. .+..++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 45789999999999999999999999842 33444443
No 398
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.89 E-value=0.00076 Score=61.98 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=19.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.+|||+||||||||++|+++..-+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCeEEECCCCCCHHHHHHHHHHhC
Confidence 599999999999999999998754
No 399
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.88 E-value=0.0011 Score=58.68 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
.+.|..|+|.|++|+|||++|+++++.+.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35677999999999999999999999885
No 400
>PRK13764 ATPase; Provisional
Probab=96.87 E-value=0.0013 Score=69.36 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
..++|+.||||||||+++++++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999998874
No 401
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.0013 Score=61.98 Aligned_cols=51 Identities=27% Similarity=0.444 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhhC---CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 128 FMDKLVVHITKNFMSL---PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 128 ~~d~~~~~i~k~~l~~---~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
+.++..-..++.|+-+ ...+.|+.+||=|+||+|||++|.-+|..+|+.-+
T Consensus 65 l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~v 118 (299)
T COG2074 65 LLEKGDPEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSV 118 (299)
T ss_pred HHHhcCHHHHHHHHHHHHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCcee
Confidence 4444455667777753 47788999999999999999999999999999743
No 402
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.86 E-value=0.0023 Score=63.89 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=41.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhC-----CccEEeccC-ccc-----------cCCCCChHHHHHHHHHHHHHHHHhCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAG-ELE-----------SGNAGEPAKLIRQRYREAADIIKKGK 212 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg-----~~~i~vs~s-~l~-----------s~~~Ge~~~~ir~~f~~A~~~~~~~~ 212 (351)
..+|+.||+|+|||++.+++..++. ..++.+... ++. ....|.... -|..+....-+..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~----~~~~~l~~aLR~~ 225 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVD----SFANGIRLALRRA 225 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCcc----CHHHHHHHhhccC
Confidence 3689999999999999999988773 233333211 211 011121111 2333322225779
Q ss_pred ceEEEeccc
Q 018745 213 MCCLMINDL 221 (351)
Q Consensus 213 p~IL~IDEI 221 (351)
|.+|++.|+
T Consensus 226 PD~I~vGEi 234 (372)
T TIGR02525 226 PKIIGVGEI 234 (372)
T ss_pred CCEEeeCCC
Confidence 999999998
No 403
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.85 E-value=0.0057 Score=55.12 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
++...++|.||+|||||+|+++++....
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3457899999999999999999999875
No 404
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.85 E-value=0.0023 Score=61.85 Aligned_cols=71 Identities=11% Similarity=0.230 Sum_probs=49.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH------hCCccEEeccCccccCCCCChHHHHHHHHHHH-----------HHHHHhC
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK------MGINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKG 211 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~------lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A-----------~~~~~~~ 211 (351)
...+||.||.|.|||+||+.|+.- +.-.|+.+++..+.... .+..+|... ..+++..
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~------amsalfghvkgaftga~~~r~gllrsa 281 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDT------AMSALFGHVKGAFTGARESREGLLRSA 281 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCch------HHHHHHhhhccccccchhhhhhhhccC
Confidence 345999999999999999999753 45679999998875321 123334321 1334455
Q ss_pred CceEEEeccccccc
Q 018745 212 KMCCLMINDLDAGA 225 (351)
Q Consensus 212 ~p~IL~IDEID~l~ 225 (351)
....||+|||..+.
T Consensus 282 dggmlfldeigelg 295 (531)
T COG4650 282 DGGMLFLDEIGELG 295 (531)
T ss_pred CCceEehHhhhhcC
Confidence 67799999996653
No 405
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.85 E-value=0.0012 Score=60.13 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCcc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINP 177 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~ 177 (351)
.|..+++.|+||+|||++|+.+|.++++..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 356899999999999999999999988754
No 406
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.85 E-value=0.0013 Score=60.82 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=30.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~ 189 (351)
.++|+||+|||||.+|-++|++.|.+++..+.-......
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l 41 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPEL 41 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccccc
Confidence 579999999999999999999999999998877665543
No 407
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.84 E-value=0.0019 Score=65.32 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=40.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEeccccccc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGA 225 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~IL~IDEID~l~ 225 (351)
.....+++.||+|||||+++.+++.+.-+. ++ ..-...+++.++-. ..+. -....+|+|||+..+.
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~----sG------~f~T~a~Lf~~L~~---~~lg~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILI----SG------GTITVAKLFYNIST---RQIGLVGRWDVVAFDEVATLK 273 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHH----cC------CcCcHHHHHHHHHH---HHHhhhccCCEEEEEcCCCCc
Confidence 445689999999999999999988762110 11 11112233322222 1122 4678899999996543
No 408
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.84 E-value=0.0026 Score=57.08 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
....++|.||+|+|||++.++++..+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 345899999999999999999998763
No 409
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0063 Score=61.10 Aligned_cols=99 Identities=19% Similarity=0.124 Sum_probs=65.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhC--CccEEeccCcccc------CCCC--------ChHHHHHHHHHHHHHHHHhC
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELES------GNAG--------EPAKLIRQRYREAADIIKKG 211 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg--~~~i~vs~s~l~s------~~~G--------e~~~~ir~~f~~A~~~~~~~ 211 (351)
+-..+||-|.||.|||+|.-.+|..+. ..++++++.+-.. ...| -.+.++.++.+.. ...
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l----~~~ 167 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAEL----EQE 167 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHH----Hhc
Confidence 336788999999999999999888763 2688888764321 1111 1233344444444 678
Q ss_pred CceEEEecccccccCCCC-CCccchhhhHHHHHHHHHhhc
Q 018745 212 KMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIAD 250 (351)
Q Consensus 212 ~p~IL~IDEID~l~~~r~-~~~~~~~~~~~v~~~L~~lld 250 (351)
+|.+++||-|..+....- +....-..-+.....|+++..
T Consensus 168 ~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK 207 (456)
T COG1066 168 KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK 207 (456)
T ss_pred CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH
Confidence 999999999988876542 112233455667777777766
No 410
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.82 E-value=0.0095 Score=60.80 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l 185 (351)
..|..++|+|++|+|||++|..+|..+ |..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 357899999999999999999998877 566666666543
No 411
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.82 E-value=0.0068 Score=53.94 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccc
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 186 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~ 186 (351)
...+..++|.|+||+|||++++.++..+ +...+.++...+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 3567799999999999999999999987 4455666665543
No 412
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.81 E-value=0.0045 Score=59.47 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----C-CccEEeccCc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM----G-INPIMMSAGE 184 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l----g-~~~i~vs~s~ 184 (351)
+.+..++|.||+|+|||+++..+|..+ | ..+..++...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 346789999999999999999998765 3 5666666544
No 413
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.81 E-value=0.0097 Score=60.01 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=47.3
Q ss_pred HhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 018745 139 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (351)
Q Consensus 139 ~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~I 218 (351)
.+.......++ .++|+||-+||||++.+.+.+...-..+.++..++......- ...-..+..+ .....+.|||
T Consensus 28 ~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~----~~~~~~yifL 100 (398)
T COG1373 28 RLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIEL----KEREKSYIFL 100 (398)
T ss_pred HHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHh----hccCCceEEE
Confidence 33333344444 999999999999999988887765545556555443322110 1111222222 2225589999
Q ss_pred cccccc
Q 018745 219 NDLDAG 224 (351)
Q Consensus 219 DEID~l 224 (351)
|||...
T Consensus 101 DEIq~v 106 (398)
T COG1373 101 DEIQNV 106 (398)
T ss_pred ecccCc
Confidence 999654
No 414
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0018 Score=62.88 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcccc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 187 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s 187 (351)
.|..++|+||+++|||-||-++|++++..++.++.-.+..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr 41 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYR 41 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcC
Confidence 4678999999999999999999999999998887665543
No 415
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.80 E-value=0.02 Score=53.90 Aligned_cols=138 Identities=14% Similarity=0.249 Sum_probs=71.6
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCCc--cEEeccCccccCC---C-----------CChHHHHHHHHHHHHHHHH
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGN---A-----------GEPAKLIRQRYREAADIIK 209 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~~--~i~vs~s~l~s~~---~-----------Ge~~~~ir~~f~~A~~~~~ 209 (351)
.+.|--+.+.|++|||||+++..+...+... .+.+-.......+ . .+.+..+...-....+..+
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 3456678899999999999999988776432 2222211111111 0 0111111111111111111
Q ss_pred ------hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCCCcc
Q 018745 210 ------KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 283 (351)
Q Consensus 210 ------~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~Ld~ 283 (351)
...+++|+|||+-. . ....+.+ .+++. ....-++-+|..+.....||+
T Consensus 90 k~~~~k~~~~~LiIlDD~~~---~-------~~k~~~l----~~~~~------------~gRH~~is~i~l~Q~~~~lp~ 143 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGD---K-------KLKSKIL----RQFFN------------NGRHYNISIIFLSQSYFHLPP 143 (241)
T ss_pred hhcccCCCCCeEEEEeCCCC---c-------hhhhHHH----HHHHh------------cccccceEEEEEeeecccCCH
Confidence 13378999999721 0 0111222 22222 123456789999999999988
Q ss_pred hhccCCcceEEEeC-CCHHHHHHHHHHhh
Q 018745 284 PLIRDGRMEKFYWA-PTREDRIGVCKGIF 311 (351)
Q Consensus 284 aLlR~gRfd~~i~~-P~~e~R~~Il~~~~ 311 (351)
.++. =.+.++.. -+..+..-|++.+.
T Consensus 144 ~iR~--n~~y~i~~~~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 144 NIRS--NIDYFIIFNNSKRDLENIYRNMN 170 (241)
T ss_pred HHhh--cceEEEEecCcHHHHHHHHHhcc
Confidence 8643 45555544 45555555555544
No 416
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.80 E-value=0.0051 Score=55.63 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=31.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCcc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l 185 (351)
..|..+.|.|++|+|||+++++++..+ |...+.++...+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 457789999999999999999999987 455666665443
No 417
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.0027 Score=58.49 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=25.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
-|+|+|+||+|||++|+-+|+++ ++.++.+..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 47899999999999999999998 344444443
No 418
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.78 E-value=0.011 Score=60.06 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=31.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 184 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~ 184 (351)
..|..++|.|++|+|||+++..+|..+ |..+..+++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 347899999999999999999998877 66777776643
No 419
>PTZ00035 Rad51 protein; Provisional
Probab=96.78 E-value=0.0073 Score=59.61 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
|++....+.|+||||||||.|+..+|...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 66777889999999999999999887543
No 420
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.77 E-value=0.023 Score=62.27 Aligned_cols=34 Identities=18% Similarity=-0.068 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
..+.++|+||+|.|||+++...+...+ ++.-++.
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 345799999999999999999887666 5444433
No 421
>PF13479 AAA_24: AAA domain
Probab=96.77 E-value=0.0035 Score=57.58 Aligned_cols=71 Identities=14% Similarity=0.075 Sum_probs=39.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCc-cEEeccCcc-ccCC------CCChHHHHHHHHHHHHHHHHhCCceEEEec
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGIN-PIMMSAGEL-ESGN------AGEPAKLIRQRYREAADIIKKGKMCCLMIN 219 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~-~i~vs~s~l-~s~~------~Ge~~~~ir~~f~~A~~~~~~~~p~IL~ID 219 (351)
.+.-++||||||+|||++|..+ +-+ ++....+.. ...+ .-.+-..+.+.+....+ .......|+||
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~--~~~~y~tiVID 75 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEE--DEADYDTIVID 75 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHh--ccCCCCEEEEE
Confidence 4667999999999999999887 322 233333311 0001 00122333333333200 14566799999
Q ss_pred ccccc
Q 018745 220 DLDAG 224 (351)
Q Consensus 220 EID~l 224 (351)
-++.+
T Consensus 76 sis~~ 80 (213)
T PF13479_consen 76 SISWL 80 (213)
T ss_pred CHHHH
Confidence 88764
No 422
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.76 E-value=0.002 Score=62.43 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=42.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC-----CccEEecc-Cccc-------cCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSA-GELE-------SGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg-----~~~i~vs~-s~l~-------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 215 (351)
...+++.||+|+|||+++++++..+. ..++.+.. .++. .-...+......++...+ -+..|..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~a----LR~~pD~ 207 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKAT----LRLRPDR 207 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHH----hcCCCCE
Confidence 45899999999999999999998862 22332221 1111 000011111233444444 5789999
Q ss_pred EEeccc
Q 018745 216 LMINDL 221 (351)
Q Consensus 216 L~IDEI 221 (351)
|++.|+
T Consensus 208 iivGEi 213 (299)
T TIGR02782 208 IIVGEV 213 (299)
T ss_pred EEEecc
Confidence 999998
No 423
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.76 E-value=0.0053 Score=60.70 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
|++.-..+.++|+||+|||.+|..+|..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 5666678999999999999999987744
No 424
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.75 E-value=0.0052 Score=60.10 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
|++.-..+.++||||+|||.|+..+|..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 6677788999999999999999988763
No 425
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.75 E-value=0.0016 Score=68.22 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=76.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHH--H--H-HHHHHHHHhCCceEEEecccccc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ--R--Y-REAADIIKKGKMCCLMINDLDAG 224 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~--~--f-~~A~~~~~~~~p~IL~IDEID~l 224 (351)
..|+|.|.||+|||-+.+++++-+-..++. ++.. +.-+|-+...+++ - | -+|..+ -.....|-.|||+|++
T Consensus 379 inv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGka--SSaAGLTaaVvkD~esgdf~iEAGAL-mLADnGICCIDEFDKM 454 (764)
T KOG0480|consen 379 INVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKA--SSAAGLTAAVVKDEESGDFTIEAGAL-MLADNGICCIDEFDKM 454 (764)
T ss_pred ceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcc--cccccceEEEEecCCCCceeeecCcE-EEccCceEEechhccc
Confidence 579999999999999999999876443332 2110 1111111111100 0 0 011111 1234457789999987
Q ss_pred cCCCCCCccchhhhHHHHHHHHHhhcCCccccCC-CCcccCCCCCceEEEEeCCCC-------------CCcchhccCCc
Q 018745 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 290 (351)
Q Consensus 225 ~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~-~~~~~~~~~~v~II~TTN~~~-------------~Ld~aLlR~gR 290 (351)
..+.. . ++.+-+++.+ +++- .-.....+.|.-||+++|... .+.+|++. |
T Consensus 455 d~~dq----v---------AihEAMEQQt-ISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--R 518 (764)
T KOG0480|consen 455 DVKDQ----V---------AIHEAMEQQT-ISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--R 518 (764)
T ss_pred ChHhH----H---------HHHHHHHhhe-ehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--h
Confidence 64321 1 1222222111 0110 000112356777889988644 57899985 9
Q ss_pred ceEEEeC---CCHHHHHHHHHHhh
Q 018745 291 MEKFYWA---PTREDRIGVCKGIF 311 (351)
Q Consensus 291 fd~~i~~---P~~e~R~~Il~~~~ 311 (351)
||.++.+ |++..-..|-++++
T Consensus 519 FDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 519 FDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred hcEEEEEecCCchHHHHHHHHHHH
Confidence 9998885 88877666655554
No 426
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.73 E-value=0.0076 Score=57.70 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s 183 (351)
..|+.++|.||+|+|||+++..+|..+ |..+..+.+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456889999999999999999988776 5556555544
No 427
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.73 E-value=0.0051 Score=54.19 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 184 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~ 184 (351)
.+..+.|.|+||+|||++|+.++..+ +..+..++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 34689999999999999999999987 44455565543
No 428
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.72 E-value=0.0021 Score=63.48 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=64.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCccccCCCCChHHHHHHHHHHHH------HHHHhCCceEEEeccc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA------DIIKKGKMCCLMINDL 221 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~------~~~~~~~p~IL~IDEI 221 (351)
-+||.|+.||||-.+|+++-... ..+|+.+++..+-+..+ -.++|..+. .+....+..-+|+|||
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~a------EsElFG~apg~~gk~GffE~AngGTVlLDeI 302 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAA------ESELFGHAPGDEGKKGFFEQANGGTVLLDEI 302 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHh------HHHHhcCCCCCCCccchhhhccCCeEEeehh
Confidence 38999999999999999976544 56899999887632211 123444331 0111224557899999
Q ss_pred ccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCC
Q 018745 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (351)
Q Consensus 222 D~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~ 278 (351)
-.+.. .++.-|+..++|=+...+.+. .+-.-.|-|||||..+
T Consensus 303 gEmSp-------------~lQaKLLRFL~DGtFRRVGee--~Ev~vdVRVIcatq~n 344 (511)
T COG3283 303 GEMSP-------------RLQAKLLRFLNDGTFRRVGED--HEVHVDVRVICATQVN 344 (511)
T ss_pred hhcCH-------------HHHHHHHHHhcCCceeecCCc--ceEEEEEEEEeccccc
Confidence 54332 244556666664433332222 1114568899999764
No 429
>PLN02459 probable adenylate kinase
Probab=96.72 E-value=0.0021 Score=61.24 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
|.-++|.||||+|||++|+.+|+.+++..+.
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 3457888999999999999999999876553
No 430
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.70 E-value=0.00063 Score=62.26 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 018745 152 LGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~l 173 (351)
++++|+||||||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999885
No 431
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.69 E-value=0.0031 Score=61.84 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=30.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l 185 (351)
..+.|.|++|||||+|++.+++..+.+++.-.+-++
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~ 198 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREY 198 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHH
Confidence 478999999999999999999999988765554433
No 432
>PRK10867 signal recognition particle protein; Provisional
Probab=96.69 E-value=0.014 Score=59.42 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----CCccEEeccCc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGE 184 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~s~ 184 (351)
.+|..+++.||+|+|||+++..+|..+ |..+..+++..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 457899999999999999888877654 66677776653
No 433
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.67 E-value=0.018 Score=53.52 Aligned_cols=25 Identities=24% Similarity=-0.051 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~ 171 (351)
.....++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3345789999999999999999987
No 434
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.67 E-value=0.026 Score=52.31 Aligned_cols=26 Identities=23% Similarity=-0.005 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.....++|+||.|+|||++.+.|+.-
T Consensus 28 ~~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHH
Confidence 34568999999999999999987743
No 435
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.66 E-value=0.023 Score=49.97 Aligned_cols=28 Identities=32% Similarity=0.146 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+++...+.|.||.|+|||+|+++++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455689999999999999999999875
No 436
>PRK14529 adenylate kinase; Provisional
Probab=96.65 E-value=0.0016 Score=60.56 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=27.3
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEeccCccc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~ 186 (351)
|+|.||||+|||++++.+|+++++..+ +.+++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdll 35 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIF 35 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhh
Confidence 788999999999999999999998754 334443
No 437
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.64 E-value=0.0034 Score=61.78 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=43.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCC--ccEEe-ccCcccc-----------CC--CCChHHHHHHHHHHHHHHHHhC
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMM-SAGELES-----------GN--AGEPAKLIRQRYREAADIIKKG 211 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~--~~i~v-s~s~l~s-----------~~--~Ge~~~~ir~~f~~A~~~~~~~ 211 (351)
..+.|++.||+|+|||++.+++..+..- .++.+ ...++.- .. .|...-...++.+.+ -+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~----LR~ 234 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEAC----LRL 234 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHH----hcc
Confidence 3568999999999999999999988742 22222 1112210 00 111111234444454 688
Q ss_pred CceEEEeccc
Q 018745 212 KMCCLMINDL 221 (351)
Q Consensus 212 ~p~IL~IDEI 221 (351)
+|..|++.|+
T Consensus 235 ~PD~IivGEi 244 (332)
T PRK13900 235 RPDRIIVGEL 244 (332)
T ss_pred CCCeEEEEec
Confidence 9999999998
No 438
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0057 Score=53.88 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+++...+.|.||+|+|||+|.++|+...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4455689999999999999999999875
No 439
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.62 E-value=0.0035 Score=60.87 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=43.1
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHhCC--ccEEec-cCcccc----------CC--CCChHHHHHHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELES----------GN--AGEPAKLIRQRYREAADIIKK 210 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~lg~--~~i~vs-~s~l~s----------~~--~Ge~~~~ir~~f~~A~~~~~~ 210 (351)
++....+++.||+|+|||+++++++..+.- ..+.+. ..++.- .. .+...-...+++..+ -+
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~----Lr 216 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSC----LR 216 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHH----hc
Confidence 344568999999999999999999987632 222221 111110 00 011111233444444 57
Q ss_pred CCceEEEeccc
Q 018745 211 GKMCCLMINDL 221 (351)
Q Consensus 211 ~~p~IL~IDEI 221 (351)
..|.+|++||+
T Consensus 217 ~~pd~ii~gE~ 227 (308)
T TIGR02788 217 MRPDRIILGEL 227 (308)
T ss_pred CCCCeEEEecc
Confidence 88999999998
No 440
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.62 E-value=0.0091 Score=51.05 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.3
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCC
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
++|.||+|+|||+|++.+++....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 678999999999999999998643
No 441
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.62 E-value=0.026 Score=49.78 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+....+.|.||.|+|||+|.++++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344579999999999999999999865
No 442
>PRK05439 pantothenate kinase; Provisional
Probab=96.61 E-value=0.003 Score=61.62 Aligned_cols=39 Identities=33% Similarity=0.490 Sum_probs=31.6
Q ss_pred HHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 136 i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
..+.|+.....+.|..|++.|+||+|||++|+.++..++
T Consensus 73 ~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 73 ALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344555545667889999999999999999999998764
No 443
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.011 Score=52.19 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.+...+.|.||+|+|||+|.++++...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344579999999999999999998764
No 444
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.61 E-value=0.0035 Score=60.62 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=30.4
Q ss_pred HHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 137 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 137 ~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
...|+.....+.|..|.|.||+|+|||++|+.+...+.
T Consensus 50 ~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 50 LEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44455445567899999999999999999999877664
No 445
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.60 E-value=0.0019 Score=58.21 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=22.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg 174 (351)
.|.|.||+|+|||++|+.++..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999996
No 446
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.60 E-value=0.002 Score=58.65 Aligned_cols=28 Identities=32% Similarity=0.672 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
.+..|.|.||+|+|||+|+++++..+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3467889999999999999999998763
No 447
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.58 E-value=0.015 Score=51.64 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+++...++|.||+|+|||+|.++|+...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445689999999999999999998764
No 448
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.57 E-value=0.0027 Score=53.82 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
+....|+|+|+=|+|||++++.+++.+|..-...|+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SP 48 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDEEVTSP 48 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S----T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCC
Confidence 445689999999999999999999999987543333
No 449
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.56 E-value=0.035 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.050 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHH
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.+.++|+||..+|||++.+.||..
T Consensus 43 ~~~~iiTGpN~sGKSt~lk~i~~~ 66 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFLKQIGLI 66 (235)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH
T ss_pred eeEEEEeCCCccchhhHHHHHHHH
Confidence 468999999999999999998764
No 450
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.54 E-value=0.0039 Score=61.21 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=42.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC-----CccEEec-cCccccC------CCCChHHHHHHHHHHHHHHHHhCCceEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMS-AGELESG------NAGEPAKLIRQRYREAADIIKKGKMCCL 216 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg-----~~~i~vs-~s~l~s~------~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 216 (351)
...+|+.|++|+|||++.++++.+.. ..++.+. ..++.-. +.....-...++...+ -+.+|..|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~a----LR~~PD~I 219 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKST----MRLRPDRI 219 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHH----hCCCCCEE
Confidence 45799999999999999999998762 2233322 2222110 0001111233334444 57899999
Q ss_pred Eeccc
Q 018745 217 MINDL 221 (351)
Q Consensus 217 ~IDEI 221 (351)
++.|+
T Consensus 220 ivGEi 224 (323)
T PRK13833 220 IVGEV 224 (323)
T ss_pred EEeec
Confidence 99998
No 451
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.53 E-value=0.012 Score=60.83 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHH----hCCccEEeccC
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAG 183 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~----lg~~~i~vs~s 183 (351)
|++....+||.||||||||+||..++.+ .|.+.++++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6777899999999999999999987433 25676666543
No 452
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.52 E-value=0.012 Score=57.70 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEecc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~ 182 (351)
+.|..++|.||+|+|||+++..+|..+ +..+..+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 357889999999999999999999876 445555544
No 453
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.51 E-value=0.0094 Score=59.26 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
..|..+.|.||.|||||++.++|...+..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 56778999999999999999999888743
No 454
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0016 Score=66.28 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHHHhhhC--CCCCCCcEEEEEcCCCccHHHHHHHHHHH
Q 018745 125 APAFMDKLVVHITKNFMSL--PNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 125 ~~~~~d~~~~~i~k~~l~~--~~~~~p~glLL~GppGtGKT~LA~aIA~~ 172 (351)
.+.|.|-.....+|..+.. -|. .++|++||||||||+||+.+..-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGg---HnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGG---HNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcC---CcEEEecCCCCchHHhhhhhccc
Confidence 4567777777777777642 232 48999999999999999987643
No 455
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.50 E-value=0.012 Score=57.03 Aligned_cols=121 Identities=15% Similarity=0.187 Sum_probs=66.0
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL~IDEID~ 223 (351)
...+....++|+|+.|+|||++.+.|.+-+|-..+....+...... +.. .|..| ......+++.||++.
T Consensus 71 ~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~~------~f~~a----~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 71 GNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QEH------RFGLA----RLEGKRAVIGDEVQK 139 (304)
T ss_pred CCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cCC------Cchhh----hhcCCEEEEecCCCC
Confidence 3466678999999999999999999988888654332222222221 110 24444 333456888899864
Q ss_pred ccCCCCCCccchhhhHHHHHHHHHhhc-CCccccCCCCcccCCCCCceEEEEeCCCCCC---cchhccC
Q 018745 224 GAGRMGGTTQYTVNNQMVNATLMNIAD-NPTCVQLPGMYNKEENPRVPIIVTGNDFSTL---YAPLIRD 288 (351)
Q Consensus 224 l~~~r~~~~~~~~~~~~v~~~L~~lld-~~~~~~l~~~~~~~~~~~v~II~TTN~~~~L---d~aLlR~ 288 (351)
.. .. .. +.|..+.. ++..+...............+|++||+.-.+ +.++.||
T Consensus 140 ~~--~~-------~~----~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~~RR 195 (304)
T TIGR01613 140 GY--RD-------DE----STFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGIKRR 195 (304)
T ss_pred Cc--cc-------cH----HhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhheee
Confidence 31 11 11 12222222 1111111111111224456788999986655 4567773
No 456
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.49 E-value=0.011 Score=52.39 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHh
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.-.+|+||||+|||+++..++..+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999999888765
No 457
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.013 Score=55.18 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.--.+-|.||+|||||+|.+.||.-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468899999999999999999754
No 458
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.48 E-value=0.03 Score=52.06 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHHH
Q 018745 152 LGIWGGKGQGKSFQCELVFAK 172 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~ 172 (351)
-+|+||||+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999998865
No 459
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.48 E-value=0.0051 Score=62.08 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
.+-|.|.|++|||||+|++++|+..|...+.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 4579999999999999999999999887543
No 460
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.47 E-value=0.0031 Score=56.41 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=26.6
Q ss_pred EEEEcCCCccHHHHHHHHHHHhC---CccEEeccCcc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 185 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg---~~~i~vs~s~l 185 (351)
|++.|+||||||++|+.++..++ .++..++..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 78999999999999999999873 45555554443
No 461
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.47 E-value=0.017 Score=59.74 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=31.7
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccC
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s 183 (351)
.|++....+||.||||+|||+|+-.++.+. |.+.++++..
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 367777899999999999999999887754 5566666554
No 462
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.47 E-value=0.0029 Score=56.41 Aligned_cols=31 Identities=39% Similarity=0.654 Sum_probs=25.4
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEEeccCcc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l 185 (351)
|+|+|++|||||++++.+++ +|++++ ++..+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~~ 32 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI--DADKI 32 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE--ecCHH
Confidence 78999999999999999998 787654 44444
No 463
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.46 E-value=0.0028 Score=56.69 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=24.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCcc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINP 177 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~ 177 (351)
..+.|.||+|+|||++++.++...+..+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~ 30 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQL 30 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeE
Confidence 3688999999999999999999877643
No 464
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.45 E-value=0.039 Score=49.67 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 146 ~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
+++...+.|.||+|+|||+|.++|+...
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455689999999999999999999865
No 465
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.45 E-value=0.0025 Score=56.31 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
.++|.||+|+|||+++++++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999998754
No 466
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.45 E-value=0.055 Score=54.05 Aligned_cols=51 Identities=20% Similarity=0.434 Sum_probs=39.6
Q ss_pred HHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcc
Q 018745 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (351)
Q Consensus 135 ~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l 185 (351)
...+.++....-..|..+.|||..|||||++.+.+.++++.+.+.+++-+.
T Consensus 16 ~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 16 RRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred HHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 344455544344678899999999999999999999999888887766543
No 467
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.43 E-value=0.0028 Score=62.60 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l 173 (351)
.+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 468
>PRK07667 uridine kinase; Provisional
Probab=96.43 E-value=0.005 Score=55.62 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC---CccEEeccCcc
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 185 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg---~~~i~vs~s~l 185 (351)
+..|.|.|+||+|||++|+.+++.++ .++..++...+
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 47899999999999999999999873 45555555543
No 469
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.42 E-value=0.018 Score=51.47 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
.-.++||.|+|||.+..||+-.++.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~ 48 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGG 48 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCc
Confidence 6789999999999999999876643
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.42 E-value=0.0039 Score=56.11 Aligned_cols=33 Identities=30% Similarity=0.613 Sum_probs=25.2
Q ss_pred EEEEcCCCccHHHHHHHHHHHhC-CccEEeccCc
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMG-INPIMMSAGE 184 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg-~~~i~vs~s~ 184 (351)
+.|.||+|||||+++++++..++ .....++...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 68999999999999999999873 2344444433
No 471
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.42 E-value=0.0027 Score=56.51 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHh
Q 018745 152 LGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~l 173 (351)
++|+|+||+|||++++.+++++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 472
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.40 E-value=0.0046 Score=60.55 Aligned_cols=69 Identities=12% Similarity=0.210 Sum_probs=42.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhC-----CccEEe-ccCcccc---C---CCCChHHHHHHHHHHHHHHHHhCCceEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMM-SAGELES---G---NAGEPAKLIRQRYREAADIIKKGKMCCL 216 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg-----~~~i~v-s~s~l~s---~---~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 216 (351)
...+++.|++|+|||+++++++.+.- ..++.+ ...++.- . +.....-...+++..+ -+.+|..|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~a----LR~~PD~I 223 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTT----LRMRPDRI 223 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHH----hcCCCCEE
Confidence 46899999999999999999998741 122221 2222210 0 0001111234445454 57899999
Q ss_pred Eeccc
Q 018745 217 MINDL 221 (351)
Q Consensus 217 ~IDEI 221 (351)
++.|+
T Consensus 224 ivGEi 228 (319)
T PRK13894 224 LVGEV 228 (319)
T ss_pred EEecc
Confidence 99998
No 473
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.40 E-value=0.0086 Score=56.43 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=33.0
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh---CCccEEeccCc
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 184 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs~s~ 184 (351)
.|++.-..+|++|+||||||.++...+.+. |.+++.++..+
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 366777899999999999999999876553 67788887653
No 474
>PRK13808 adenylate kinase; Provisional
Probab=96.39 E-value=0.003 Score=62.18 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.9
Q ss_pred EEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
|+|.||||+|||++|+.||+.+++..+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is 30 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLS 30 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 7899999999999999999999875443
No 475
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.38 E-value=0.0039 Score=57.70 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=26.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccE
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPI 178 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i 178 (351)
..|.|.||+|||||++++.+|+++++.++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46899999999999999999999998765
No 476
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.37 E-value=0.0031 Score=57.15 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.0
Q ss_pred EEEEcCCCccHHHHHHHHHHHh-CCccE
Q 018745 152 LGIWGGKGQGKSFQCELVFAKM-GINPI 178 (351)
Q Consensus 152 lLL~GppGtGKT~LA~aIA~~l-g~~~i 178 (351)
|.+.|+||||||++|+.+++.+ ++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i 29 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVI 29 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence 6789999999999999999998 44443
No 477
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.36 E-value=0.0043 Score=60.46 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEEecc
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~ 182 (351)
.+..++|.||+|||||.||..+|++++..++..+.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 35689999999999999999999999877665543
No 478
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.36 E-value=0.0039 Score=56.65 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=27.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHhCCccEEeccCcc
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~l 185 (351)
.|.|+|++|||||++++.+++.+|++++ ++..+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~ 35 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIY 35 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHH
Confidence 5899999999999999999998888766 44444
No 479
>PTZ00202 tuzin; Provisional
Probab=96.35 E-value=0.028 Score=57.44 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=32.2
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhCCccEEeccC
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s 183 (351)
....|+.+.|.||+|||||+|++.+...++...+.++..
T Consensus 282 d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 282 DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 445677999999999999999999999988766665554
No 480
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.35 E-value=0.0026 Score=56.02 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
+.++|.||+|+|||+|++.+++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 46899999999999999999997644
No 481
>PLN02165 adenylate isopentenyltransferase
Probab=96.32 E-value=0.0042 Score=61.06 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
...++|.||+|+|||+||..+|..++..++..+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 347999999999999999999999987655443
No 482
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.32 E-value=0.0056 Score=60.61 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=42.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCC--ccEEec-cCcccc--C----------CCCChHHHHHHHHHHHHHHHHhCC
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELES--G----------NAGEPAKLIRQRYREAADIIKKGK 212 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~--~~i~vs-~s~l~s--~----------~~Ge~~~~ir~~f~~A~~~~~~~~ 212 (351)
....+|+.||+|+|||+++++++.++.. .++.+. ..++.- . ..+...-...+++..+ -+.+
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~----LR~~ 236 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQAS----LRMR 236 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHH----hcCC
Confidence 4468999999999999999999988643 222221 111110 0 0011111233444444 5778
Q ss_pred ceEEEeccc
Q 018745 213 MCCLMINDL 221 (351)
Q Consensus 213 p~IL~IDEI 221 (351)
|..|++.|+
T Consensus 237 pD~IivGEi 245 (344)
T PRK13851 237 PDRILLGEM 245 (344)
T ss_pred CCeEEEEee
Confidence 999999997
No 483
>PRK08356 hypothetical protein; Provisional
Probab=96.31 E-value=0.0044 Score=55.89 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCccEEeccCc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs~s~ 184 (351)
..++|.||||+|||++|+.+. +.|++ .++.++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCC
Confidence 468899999999999999995 46766 444443
No 484
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.30 E-value=0.0079 Score=68.29 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=107.5
Q ss_pred CCCcEEEEEcCCCccHHHH-HHHHHHHhCCccEEeccCccccCCCCChHHHHHHHHHHHHHHHHh-----------CCce
Q 018745 147 KVPLILGIWGGKGQGKSFQ-CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-----------GKMC 214 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~L-A~aIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~-----------~~p~ 214 (351)
...++++++||||+|||+| +-++-++.-..++.++.+.-.. ++..++-+=+.. +.... -+.-
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t-~yy~~tg~~~l~PK~~vK~l 1565 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERET-EYYPNTGVVRLYPKPVVKDL 1565 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhc-eeeccCCeEEEccCcchhhe
Confidence 3457999999999999996 4467777777777777663321 222232221111 00011 1224
Q ss_pred EEEecccccccCCCC-C-CccchhhhHHHHHHHHHhhcCCccccCCCCccc-----CCCCCceEEEEeCCCCCC-----c
Q 018745 215 CLMINDLDAGAGRMG-G-TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDFSTL-----Y 282 (351)
Q Consensus 215 IL~IDEID~l~~~r~-~-~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~-----~~~~~v~II~TTN~~~~L-----d 282 (351)
|||.|||. +-..+. + .+..-...+++. -.|+|.. ....++.+.+++|.+.+. +
T Consensus 1566 VLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e--------------~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~ 1630 (3164)
T COG5245 1566 VLFCDEIN-LPYGFEYYPPTVIVFLRPLVE--------------RQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYY 1630 (3164)
T ss_pred EEEeeccC-CccccccCCCceEEeeHHHHH--------------hcccccchhhhHhhhcceEEEccCCCCCCcccCccH
Confidence 89999997 332221 1 111111122221 1245543 345788899999976643 2
Q ss_pred chhccCCcceEEEeC--CCHHHHHHHHHHhhcCCCCCHHHHHHHhcCCCCCCccccchhhc-cCCCcccc
Q 018745 283 APLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIGKFPVPLM-MQTPHQMH 349 (351)
Q Consensus 283 ~aLlR~gRfd~~i~~--P~~e~R~~Il~~~~~~~~~~~~~l~~l~~gf~g~dldf~galr~-~q~~~~~~ 349 (351)
..++| -..++++ |.......|...++.+.-+..++...+++-+..++..|+.-.++ -++..|||
T Consensus 1631 eRf~r---~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~ 1697 (3164)
T COG5245 1631 ERFIR---KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMN 1697 (3164)
T ss_pred HHHhc---CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 33554 3345555 99999999988888777666777777888787788777777766 55566665
No 485
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.29 E-value=0.0044 Score=56.92 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
.|..|.|+|++|||||++++.+++++|++++.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vid 36 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVC 36 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 35789999999999999999999999987553
No 486
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.28 E-value=0.0098 Score=56.38 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=25.3
Q ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 144 ~~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.|++.....=|+||||||||.||..+|-..
T Consensus 33 GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 33 GGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 366666788899999999999999888765
No 487
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.0088 Score=62.03 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=25.6
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
..++|-++-+.||||||||+|.+.+...+
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHH
Confidence 56788888899999999999999988765
No 488
>PRK13975 thymidylate kinase; Provisional
Probab=96.27 E-value=0.0043 Score=55.41 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=25.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCCcc
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGINP 177 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~~~ 177 (351)
+.|.|.|++|+|||++++.+++.++...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 5789999999999999999999998643
No 489
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.26 E-value=0.019 Score=58.49 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHh----CCccEEeccCc
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGE 184 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~l----g~~~i~vs~s~ 184 (351)
..|..+++.|++|+|||++|..+|..+ |..+..+++..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~ 138 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDL 138 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 347899999999999999988887764 55666666653
No 490
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.23 E-value=0.049 Score=50.46 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHH
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFA 171 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~ 171 (351)
|++.+..+++-|+.|||||.|++.++.
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~Y 50 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAY 50 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHH
Confidence 688889999999999999999998875
No 491
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.22 E-value=0.0047 Score=57.36 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEE
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~ 179 (351)
+..|.|.||+|||||++++.+|+++|++++.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4579999999999999999999999987653
No 492
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.22 E-value=0.014 Score=55.55 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCccHHHHHHHHHHHhC
Q 018745 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (351)
Q Consensus 145 ~~~~p~glLL~GppGtGKT~LA~aIA~~lg 174 (351)
.++.-..+.|.|++|||||+++++|..-..
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 345556899999999999999999987654
No 493
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.21 E-value=0.0045 Score=55.31 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=23.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
..++|.||+|||||+++++++..++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 36899999999999999999999876
No 494
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.20 E-value=0.0051 Score=62.41 Aligned_cols=43 Identities=16% Similarity=0.130 Sum_probs=33.1
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhCCCCCCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 120 DGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 120 ~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
++|..++++++++. ..-.|||+.||||.|||++|+|+|..+..
T Consensus 247 edY~L~dkl~eRL~-------------eraeGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 247 EDYGLSDKLKERLE-------------ERAEGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred hhcCCCHHHHHHHH-------------hhhcceEEecCCCCChhHHHHHHHHHHHh
Confidence 45666777766543 22459999999999999999999998743
No 495
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.18 E-value=0.0091 Score=55.27 Aligned_cols=29 Identities=34% Similarity=0.384 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 147 ~~p~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
..|..+.|.||+|+|||+|++.++..+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999998753
No 496
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.18 E-value=0.0071 Score=53.46 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=25.9
Q ss_pred EEEEEcCCCccHHHHHHHHHHHh---CCccEEec
Q 018745 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (351)
Q Consensus 151 glLL~GppGtGKT~LA~aIA~~l---g~~~i~vs 181 (351)
.|.|.|++|+|||++++.+++++ |..++.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47899999999999999999988 66655543
No 497
>PLN02199 shikimate kinase
Probab=96.18 E-value=0.0058 Score=59.23 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHHHHhCCccEEec
Q 018745 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (351)
Q Consensus 149 p~glLL~GppGtGKT~LA~aIA~~lg~~~i~vs 181 (351)
...|+|.|++|||||++++.+|+.+|++++..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 457999999999999999999999999988655
No 498
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.16 E-value=0.003 Score=67.23 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.5
Q ss_pred cEEEEEcCCCccHHHHHHHHHHHhCC
Q 018745 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aIA~~lg~ 175 (351)
..++|+||||||||++|+++++.+..
T Consensus 51 ~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 51 RHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 47999999999999999999998753
No 499
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.16 E-value=0.0051 Score=55.52 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHHHh
Q 018745 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (351)
Q Consensus 148 ~p~glLL~GppGtGKT~LA~aIA~~l 173 (351)
.|+.++|.||+|+|||+|++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999998875
No 500
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.16 E-value=0.017 Score=56.82 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=76.0
Q ss_pred cEEEEEcCCCccHHHHHHHH---HHHhCCccEEeccCccccC---------------------CCCChHHHHHHHHHHHH
Q 018745 150 LILGIWGGKGQGKSFQCELV---FAKMGINPIMMSAGELESG---------------------NAGEPAKLIRQRYREAA 205 (351)
Q Consensus 150 ~glLL~GppGtGKT~LA~aI---A~~lg~~~i~vs~s~l~s~---------------------~~Ge~~~~ir~~f~~A~ 205 (351)
-.+++.||.|+|||+|...+ +++.|.+++.+........ -.|....++..+.
T Consensus 50 nsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL---- 125 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLL---- 125 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHH----
Confidence 47999999999999987644 3367778777655432211 0011111111111
Q ss_pred HHHH-----hCCceEEEecccccccCCCCCCccchhhhHHHHHHHHHhhcCCccccCCCCcccCCCCCceEEEEeCCCCC
Q 018745 206 DIIK-----KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 280 (351)
Q Consensus 206 ~~~~-----~~~p~IL~IDEID~l~~~r~~~~~~~~~~~~v~~~L~~lld~~~~~~l~~~~~~~~~~~v~II~TTN~~~~ 280 (351)
+.++ ...+.|.++||+|..++... | ..|.|++| - .......+-||+.|-+.+-
T Consensus 126 ~~L~~~~~~t~~~ViFIldEfDlf~~h~r---------Q---tllYnlfD--------i--sqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 126 EALKKGDETTSGKVIFILDEFDLFAPHSR---------Q---TLLYNLFD--------I--SQSARAPICIIGVTTRLDI 183 (408)
T ss_pred HHHhcCCCCCCceEEEEeehhhccccchh---------h---HHHHHHHH--------H--HhhcCCCeEEEEeeccccH
Confidence 1112 11233445689998775432 2 23566666 1 1123456667887877776
Q ss_pred Ccchhcc-CCcceEE-EeC---CCHHHHHHHHHHhh
Q 018745 281 LYAPLIR-DGRMEKF-YWA---PTREDRIGVCKGIF 311 (351)
Q Consensus 281 Ld~aLlR-~gRfd~~-i~~---P~~e~R~~Il~~~~ 311 (351)
++-=-.| ..||... +++ -+-++-..+++..+
T Consensus 184 lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 184 LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 5443333 4688866 554 33677778888776
Done!